Query 041567
Match_columns 467
No_of_seqs 343 out of 2112
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 08:29:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041567.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041567hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 7.6E-66 1.7E-70 555.4 32.1 432 1-461 1-508 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 1.3E-42 2.8E-47 337.5 14.9 240 164-406 1-284 (287)
3 PLN03210 Resistant to P. syrin 100.0 2.3E-36 5E-41 341.9 24.1 274 156-456 181-505 (1153)
4 PRK04841 transcriptional regul 99.4 1.5E-11 3.3E-16 138.1 25.0 272 155-453 10-332 (903)
5 PRK00411 cdc6 cell division co 99.3 4.5E-10 9.8E-15 114.1 23.3 282 156-443 27-375 (394)
6 COG2909 MalT ATP-dependent tra 99.1 4E-09 8.6E-14 110.8 20.7 276 156-455 16-340 (894)
7 TIGR02928 orc1/cdc6 family rep 99.1 1.6E-08 3.5E-13 101.7 23.1 118 156-277 12-141 (365)
8 TIGR00635 ruvB Holliday juncti 98.9 2E-08 4.4E-13 98.3 12.0 250 159-429 4-290 (305)
9 PRK00080 ruvB Holliday junctio 98.8 4.7E-08 1E-12 96.7 14.0 252 156-429 22-311 (328)
10 TIGR03015 pepcterm_ATPase puta 98.8 1.5E-07 3.2E-12 90.5 16.8 167 169-345 29-241 (269)
11 PF01637 Arch_ATPase: Archaeal 98.7 6E-08 1.3E-12 90.6 10.0 60 161-224 1-60 (234)
12 cd00009 AAA The AAA+ (ATPases 98.6 6.5E-07 1.4E-11 76.7 12.1 121 162-304 1-130 (151)
13 PF13191 AAA_16: AAA ATPase do 98.6 1.4E-07 3.1E-12 84.9 7.5 46 160-205 1-47 (185)
14 PF13401 AAA_22: AAA domain; P 98.6 1.6E-07 3.4E-12 79.6 7.2 110 181-299 3-122 (131)
15 PF05729 NACHT: NACHT domain 98.6 3.4E-07 7.3E-12 80.8 9.4 113 183-307 1-133 (166)
16 PTZ00202 tuzin; Provisional 98.5 1.2E-05 2.6E-10 80.0 19.6 131 153-299 256-397 (550)
17 PF13173 AAA_14: AAA domain 98.5 3E-07 6.5E-12 77.9 6.7 100 182-306 2-101 (128)
18 COG3903 Predicted ATPase [Gene 98.5 2.1E-07 4.5E-12 91.1 6.0 256 181-455 13-316 (414)
19 cd01128 rho_factor Transcripti 98.4 5.1E-07 1.1E-11 85.1 6.4 93 182-275 16-113 (249)
20 COG3899 Predicted ATPase [Gene 98.3 3.1E-05 6.6E-10 85.6 18.4 281 160-451 1-384 (849)
21 PRK09376 rho transcription ter 98.3 8.5E-07 1.8E-11 87.4 5.5 99 170-275 158-266 (416)
22 PTZ00112 origin recognition co 98.3 2.5E-05 5.4E-10 83.6 15.8 268 156-429 752-1087(1164)
23 COG1474 CDC6 Cdc6-related prot 98.2 7E-06 1.5E-10 81.8 10.3 114 156-276 14-134 (366)
24 PRK05564 DNA polymerase III su 98.2 5.4E-05 1.2E-09 74.4 16.2 123 159-304 4-133 (313)
25 PF05621 TniB: Bacterial TniB 98.1 0.0001 2.2E-09 70.4 15.2 112 158-276 33-156 (302)
26 PRK13342 recombination factor 98.1 2.9E-05 6.3E-10 79.3 12.3 45 158-204 11-58 (413)
27 TIGR00767 rho transcription te 98.1 1.5E-05 3.3E-10 79.0 8.9 94 181-276 167-266 (415)
28 PRK06893 DNA replication initi 98.1 2.1E-05 4.6E-10 73.6 9.5 38 182-221 39-76 (229)
29 PRK12402 replication factor C 98.0 4E-05 8.7E-10 76.0 10.9 45 158-204 14-58 (337)
30 KOG2543 Origin recognition com 98.0 3E-05 6.6E-10 75.2 9.1 116 157-277 4-127 (438)
31 TIGR02903 spore_lon_C ATP-depe 98.0 0.00014 3E-09 77.8 14.6 143 158-304 153-334 (615)
32 COG2256 MGS1 ATPase related to 97.9 5.3E-05 1.1E-09 74.2 9.8 111 158-305 29-144 (436)
33 PRK07003 DNA polymerase III su 97.9 8.6E-05 1.9E-09 79.0 12.0 138 158-304 15-159 (830)
34 TIGR03420 DnaA_homol_Hda DnaA 97.9 3.9E-05 8.4E-10 71.5 8.6 54 164-221 22-75 (226)
35 PF05496 RuvB_N: Holliday junc 97.9 8.5E-05 1.8E-09 67.9 10.2 55 156-212 21-78 (233)
36 PRK04195 replication factor C 97.9 7.9E-05 1.7E-09 77.7 11.4 119 157-302 12-138 (482)
37 PRK11331 5-methylcytosine-spec 97.9 6.4E-05 1.4E-09 75.9 10.0 108 158-277 174-284 (459)
38 PRK12323 DNA polymerase III su 97.9 0.00014 3E-09 76.4 12.7 46 158-204 15-60 (700)
39 PRK14961 DNA polymerase III su 97.9 0.00031 6.7E-09 70.5 14.4 136 158-303 15-158 (363)
40 smart00382 AAA ATPases associa 97.8 0.00015 3.2E-09 61.3 9.9 90 182-279 2-92 (148)
41 PHA02544 44 clamp loader, smal 97.8 0.00017 3.7E-09 71.0 11.3 120 157-304 19-141 (316)
42 PRK14960 DNA polymerase III su 97.8 0.0003 6.4E-09 74.2 13.1 137 158-303 14-157 (702)
43 PRK00440 rfc replication facto 97.8 0.00022 4.7E-09 70.2 11.7 120 159-302 17-140 (319)
44 PRK14957 DNA polymerase III su 97.8 0.00022 4.7E-09 74.6 12.0 46 158-204 15-60 (546)
45 PLN03025 replication factor C 97.8 0.00022 4.8E-09 70.3 11.2 123 158-303 12-138 (319)
46 PRK08116 hypothetical protein; 97.7 0.00032 7E-09 67.2 11.1 99 183-302 115-219 (268)
47 PRK14963 DNA polymerase III su 97.7 0.00042 9.2E-09 72.1 12.8 133 158-299 13-152 (504)
48 PRK13341 recombination factor 97.7 0.00015 3.3E-09 78.4 9.7 51 158-212 27-80 (725)
49 PF00004 AAA: ATPase family as 97.7 0.0001 2.3E-09 62.1 6.8 21 185-205 1-21 (132)
50 PRK07940 DNA polymerase III su 97.7 0.001 2.2E-08 67.1 15.0 46 159-204 5-58 (394)
51 PRK08691 DNA polymerase III su 97.7 0.00046 1E-08 73.3 12.6 46 158-204 15-60 (709)
52 TIGR01242 26Sp45 26S proteasom 97.7 8.1E-05 1.8E-09 74.8 6.7 55 156-212 119-184 (364)
53 PRK14955 DNA polymerase III su 97.7 0.00072 1.6E-08 68.7 13.6 141 157-299 14-163 (397)
54 PRK14964 DNA polymerase III su 97.7 0.00072 1.6E-08 69.7 13.5 120 158-299 12-152 (491)
55 PRK14969 DNA polymerase III su 97.6 0.00066 1.4E-08 71.3 13.2 46 158-204 15-60 (527)
56 PRK14949 DNA polymerase III su 97.6 0.00052 1.1E-08 74.6 12.3 47 158-205 15-61 (944)
57 KOG2004 Mitochondrial ATP-depe 97.6 0.001 2.2E-08 69.5 13.9 104 156-276 408-516 (906)
58 PRK06645 DNA polymerase III su 97.6 0.00079 1.7E-08 70.0 13.2 144 158-307 20-172 (507)
59 PRK08727 hypothetical protein; 97.6 0.0003 6.6E-09 66.0 8.9 37 182-220 41-77 (233)
60 PRK14962 DNA polymerase III su 97.6 0.0007 1.5E-08 69.9 12.2 47 158-205 13-59 (472)
61 PRK14958 DNA polymerase III su 97.6 0.00069 1.5E-08 70.7 12.2 46 158-204 15-60 (509)
62 PRK14951 DNA polymerase III su 97.6 0.00065 1.4E-08 72.0 12.0 46 158-204 15-60 (618)
63 PF04665 Pox_A32: Poxvirus A32 97.6 0.00027 5.9E-09 65.8 8.1 37 183-221 14-50 (241)
64 PRK14956 DNA polymerase III su 97.6 0.00068 1.5E-08 69.3 11.4 46 158-204 17-62 (484)
65 PRK05896 DNA polymerase III su 97.6 0.0011 2.3E-08 69.8 13.1 47 157-204 14-60 (605)
66 PRK10536 hypothetical protein; 97.5 0.0011 2.4E-08 62.2 11.7 129 157-299 53-209 (262)
67 PRK07994 DNA polymerase III su 97.5 0.00069 1.5E-08 72.1 11.5 142 158-307 15-163 (647)
68 TIGR02881 spore_V_K stage V sp 97.5 0.00022 4.8E-09 68.1 7.0 45 160-204 7-64 (261)
69 TIGR02397 dnaX_nterm DNA polym 97.5 0.0015 3.2E-08 65.4 13.3 46 158-204 13-58 (355)
70 CHL00181 cbbX CbbX; Provisiona 97.5 0.0011 2.4E-08 64.1 11.9 45 160-204 24-81 (287)
71 COG0466 Lon ATP-dependent Lon 97.5 0.0025 5.4E-08 67.0 14.9 104 156-276 320-428 (782)
72 PRK07471 DNA polymerase III su 97.5 0.004 8.8E-08 62.3 16.1 48 156-204 16-63 (365)
73 PRK03992 proteasome-activating 97.5 0.00076 1.6E-08 68.3 10.6 49 156-204 128-187 (389)
74 PRK08084 DNA replication initi 97.5 0.00046 1E-08 64.8 8.5 38 182-221 45-82 (235)
75 cd01393 recA_like RecA is a b 97.4 0.0014 2.9E-08 61.2 11.2 103 171-275 8-124 (226)
76 PRK09112 DNA polymerase III su 97.4 0.0054 1.2E-07 61.0 15.8 49 155-204 19-67 (351)
77 PRK09111 DNA polymerase III su 97.4 0.0016 3.6E-08 69.1 12.7 47 157-204 22-68 (598)
78 PRK08118 topology modulation p 97.4 6.9E-05 1.5E-09 66.5 2.0 35 183-217 2-37 (167)
79 PRK09361 radB DNA repair and r 97.4 0.00079 1.7E-08 62.8 9.3 99 171-275 12-117 (225)
80 PRK07764 DNA polymerase III su 97.4 0.0016 3.4E-08 71.7 12.7 46 159-205 15-60 (824)
81 PRK05642 DNA replication initi 97.4 0.00079 1.7E-08 63.2 9.2 37 182-220 45-81 (234)
82 PRK12377 putative replication 97.4 0.00053 1.1E-08 64.6 7.7 38 182-221 101-138 (248)
83 TIGR00678 holB DNA polymerase 97.4 0.0031 6.7E-08 57.0 12.3 34 170-204 3-36 (188)
84 PF05673 DUF815: Protein of un 97.4 0.0015 3.3E-08 60.6 10.2 123 155-308 23-155 (249)
85 KOG2028 ATPase related to the 97.4 0.00066 1.4E-08 65.6 8.0 95 181-304 161-261 (554)
86 TIGR02237 recomb_radB DNA repa 97.4 0.00076 1.7E-08 62.1 8.4 93 180-275 10-107 (209)
87 PRK14954 DNA polymerase III su 97.4 0.0029 6.4E-08 67.3 13.7 141 158-299 15-163 (620)
88 PRK14950 DNA polymerase III su 97.4 0.0028 6E-08 67.7 13.6 134 158-299 15-156 (585)
89 PRK14952 DNA polymerase III su 97.3 0.003 6.5E-08 66.8 13.6 46 158-204 12-57 (584)
90 CHL00095 clpC Clp protease ATP 97.3 0.00035 7.6E-09 77.5 7.0 45 159-205 179-223 (821)
91 PF14516 AAA_35: AAA-like doma 97.3 0.028 6.1E-07 55.6 19.6 117 155-276 7-138 (331)
92 COG1373 Predicted ATPase (AAA+ 97.3 0.0019 4.1E-08 65.5 11.4 206 184-429 39-271 (398)
93 PRK14970 DNA polymerase III su 97.3 0.0032 7E-08 63.3 12.9 46 158-204 16-61 (367)
94 PRK08181 transposase; Validate 97.3 0.00046 1E-08 65.8 6.4 35 183-219 107-141 (269)
95 TIGR02880 cbbX_cfxQ probable R 97.3 0.0023 5E-08 61.9 10.9 45 160-204 23-80 (284)
96 PRK06835 DNA replication prote 97.3 0.024 5.2E-07 55.9 18.1 36 183-220 184-219 (329)
97 PRK14953 DNA polymerase III su 97.2 0.0058 1.3E-07 63.5 13.8 46 158-204 15-60 (486)
98 PRK14088 dnaA chromosomal repl 97.2 0.0026 5.7E-08 65.4 11.1 98 182-302 130-235 (440)
99 PRK07952 DNA replication prote 97.2 0.0023 5E-08 60.2 9.8 93 168-281 85-180 (244)
100 cd01123 Rad51_DMC1_radA Rad51_ 97.2 0.0022 4.8E-08 60.1 9.7 103 173-275 10-125 (235)
101 PRK07261 topology modulation p 97.2 0.00086 1.9E-08 59.7 6.4 67 184-277 2-69 (171)
102 PRK09087 hypothetical protein; 97.2 0.0019 4.2E-08 60.2 9.1 24 182-205 44-67 (226)
103 PRK06921 hypothetical protein; 97.2 0.0023 5E-08 61.2 9.7 37 182-220 117-154 (266)
104 PRK12608 transcription termina 97.2 0.0015 3.2E-08 64.7 8.4 105 168-275 120-230 (380)
105 TIGR02639 ClpA ATP-dependent C 97.2 0.0022 4.7E-08 70.4 10.6 116 158-288 453-578 (731)
106 PF01695 IstB_IS21: IstB-like 97.2 0.00026 5.7E-09 63.4 2.8 36 182-219 47-82 (178)
107 KOG2227 Pre-initiation complex 97.2 0.003 6.5E-08 63.2 10.3 115 156-275 147-266 (529)
108 PF00308 Bac_DnaA: Bacterial d 97.2 0.0028 6.1E-08 58.8 9.7 118 161-302 11-138 (219)
109 PRK10865 protein disaggregatio 97.2 0.0017 3.8E-08 72.1 9.7 45 159-205 178-222 (857)
110 PTZ00454 26S protease regulato 97.1 0.0015 3.3E-08 66.0 8.3 49 156-204 142-201 (398)
111 TIGR02639 ClpA ATP-dependent C 97.1 0.00077 1.7E-08 73.9 6.6 44 159-204 182-225 (731)
112 PF12061 DUF3542: Protein of u 97.1 0.0015 3.3E-08 61.7 7.4 105 4-127 297-401 (402)
113 PRK09183 transposase/IS protei 97.1 0.002 4.3E-08 61.4 8.4 23 182-204 102-124 (259)
114 PRK14965 DNA polymerase III su 97.1 0.0074 1.6E-07 64.2 13.6 46 158-204 15-60 (576)
115 PRK08939 primosomal protein Dn 97.1 0.0023 4.9E-08 62.5 9.0 116 163-302 135-259 (306)
116 TIGR03346 chaperone_ClpB ATP-d 97.1 0.006 1.3E-07 68.1 13.5 121 158-289 564-693 (852)
117 PRK08903 DnaA regulatory inact 97.1 0.0034 7.4E-08 58.5 9.9 44 162-205 22-65 (227)
118 PRK06526 transposase; Provisio 97.1 0.001 2.2E-08 63.1 6.2 24 182-205 98-121 (254)
119 COG1484 DnaC DNA replication p 97.1 0.00093 2E-08 63.4 5.9 38 181-220 104-141 (254)
120 TIGR00763 lon ATP-dependent pr 97.1 0.014 3.1E-07 64.5 16.0 53 158-212 319-375 (775)
121 PRK10787 DNA-binding ATP-depen 97.1 0.016 3.6E-07 63.7 16.3 55 156-212 319-377 (784)
122 TIGR03345 VI_ClpV1 type VI sec 97.1 0.0015 3.3E-08 72.4 8.4 44 159-204 187-230 (852)
123 TIGR01069 mutS2 MutS2 family p 97.1 0.0059 1.3E-07 67.0 12.7 31 64-94 142-172 (771)
124 TIGR03345 VI_ClpV1 type VI sec 97.1 0.0025 5.4E-08 70.7 9.8 47 158-204 565-618 (852)
125 TIGR02238 recomb_DMC1 meiotic 97.1 0.0028 6E-08 62.0 9.1 106 170-275 84-201 (313)
126 PRK14959 DNA polymerase III su 97.0 0.009 2E-07 63.3 13.3 47 158-205 15-61 (624)
127 PRK00149 dnaA chromosomal repl 97.0 0.004 8.6E-08 64.4 10.6 119 161-303 125-253 (450)
128 cd01394 radB RadB. The archaea 97.0 0.0032 7E-08 58.3 9.0 99 170-275 7-113 (218)
129 PRK12422 chromosomal replicati 97.0 0.0032 7E-08 64.7 9.7 98 182-303 141-244 (445)
130 PRK05563 DNA polymerase III su 97.0 0.012 2.6E-07 62.3 13.9 47 157-204 14-60 (559)
131 PRK14971 DNA polymerase III su 97.0 0.011 2.4E-07 63.3 13.7 46 158-204 16-61 (614)
132 cd01120 RecA-like_NTPases RecA 97.0 0.0034 7.4E-08 54.6 8.4 40 184-225 1-40 (165)
133 TIGR00362 DnaA chromosomal rep 97.0 0.0038 8.2E-08 63.7 9.6 98 182-303 136-241 (405)
134 PRK06305 DNA polymerase III su 97.0 0.01 2.2E-07 61.2 12.7 46 158-204 16-61 (451)
135 PRK14087 dnaA chromosomal repl 97.0 0.006 1.3E-07 62.9 10.9 101 182-304 141-249 (450)
136 smart00763 AAA_PrkA PrkA AAA d 97.0 0.001 2.2E-08 65.6 5.0 50 156-205 48-101 (361)
137 PHA00729 NTP-binding motif con 97.0 0.0036 7.7E-08 57.8 8.2 32 171-204 8-39 (226)
138 PRK10865 protein disaggregatio 96.9 0.0091 2E-07 66.5 13.0 47 158-204 567-620 (857)
139 KOG0989 Replication factor C, 96.9 0.0076 1.6E-07 57.3 10.4 172 156-345 33-234 (346)
140 TIGR03346 chaperone_ClpB ATP-d 96.9 0.002 4.4E-08 71.8 7.8 45 159-205 173-217 (852)
141 PRK07133 DNA polymerase III su 96.9 0.012 2.6E-07 63.3 13.3 46 158-204 17-62 (725)
142 COG0468 RecA RecA/RadA recombi 96.9 0.0062 1.3E-07 58.2 10.0 98 175-275 53-151 (279)
143 PF13207 AAA_17: AAA domain; P 96.9 0.00058 1.3E-08 56.8 2.7 21 184-204 1-21 (121)
144 PLN03186 DNA repair protein RA 96.9 0.006 1.3E-07 60.3 10.2 107 169-275 110-228 (342)
145 TIGR03689 pup_AAA proteasome A 96.9 0.0032 6.8E-08 65.4 8.5 47 159-205 182-239 (512)
146 PF08423 Rad51: Rad51; InterP 96.9 0.0023 4.9E-08 60.9 6.9 106 170-275 26-143 (256)
147 PRK06647 DNA polymerase III su 96.9 0.015 3.3E-07 61.5 13.5 47 158-205 15-61 (563)
148 COG0542 clpA ATP-binding subun 96.9 0.0055 1.2E-07 66.0 10.1 118 158-290 490-620 (786)
149 TIGR00602 rad24 checkpoint pro 96.9 0.0031 6.7E-08 67.2 8.3 51 155-205 80-133 (637)
150 PF13177 DNA_pol3_delta2: DNA 96.9 0.021 4.4E-07 50.3 12.3 118 163-305 1-143 (162)
151 PRK06696 uridine kinase; Valid 96.9 0.0014 3.1E-08 61.0 5.1 42 163-204 2-44 (223)
152 CHL00095 clpC Clp protease ATP 96.9 0.012 2.6E-07 65.5 13.2 133 158-303 508-661 (821)
153 PRK04296 thymidine kinase; Pro 96.8 0.003 6.5E-08 57.2 6.8 113 183-306 3-118 (190)
154 PRK08451 DNA polymerase III su 96.8 0.018 4E-07 60.1 13.3 46 158-204 13-58 (535)
155 PRK04301 radA DNA repair and r 96.8 0.0082 1.8E-07 59.1 10.3 106 170-275 90-208 (317)
156 TIGR02640 gas_vesic_GvpN gas v 96.8 0.058 1.3E-06 51.5 15.8 55 167-230 10-64 (262)
157 COG2255 RuvB Holliday junction 96.8 0.0012 2.5E-08 62.1 3.8 53 158-212 25-80 (332)
158 cd00561 CobA_CobO_BtuR ATP:cor 96.8 0.0081 1.8E-07 52.4 8.8 118 183-304 3-138 (159)
159 COG0470 HolB ATPase involved i 96.8 0.014 3.1E-07 57.3 11.8 119 160-302 2-147 (325)
160 PRK07667 uridine kinase; Provi 96.8 0.0028 6E-08 57.7 6.1 37 168-204 3-39 (193)
161 PRK05707 DNA polymerase III su 96.7 0.048 1E-06 53.8 15.0 26 179-204 19-44 (328)
162 PRK11034 clpA ATP-dependent Cl 96.7 0.0052 1.1E-07 67.1 8.9 44 159-204 186-229 (758)
163 COG2607 Predicted ATPase (AAA+ 96.7 0.013 2.9E-07 53.8 9.9 105 156-289 57-166 (287)
164 PRK14086 dnaA chromosomal repl 96.7 0.0059 1.3E-07 64.4 8.7 98 182-303 314-419 (617)
165 cd01131 PilT Pilus retraction 96.7 0.0044 9.6E-08 56.6 7.0 104 183-299 2-105 (198)
166 TIGR01241 FtsH_fam ATP-depende 96.7 0.0073 1.6E-07 63.3 9.5 49 157-205 53-111 (495)
167 PRK14948 DNA polymerase III su 96.7 0.02 4.3E-07 61.3 12.8 134 159-299 16-157 (620)
168 PLN03187 meiotic recombination 96.7 0.013 2.7E-07 58.0 10.4 105 171-275 115-231 (344)
169 KOG0741 AAA+-type ATPase [Post 96.7 0.014 3.1E-07 59.3 10.7 107 180-314 536-666 (744)
170 cd03214 ABC_Iron-Siderophores_ 96.7 0.013 2.9E-07 52.4 9.8 120 181-305 24-159 (180)
171 PRK05541 adenylylsulfate kinas 96.7 0.0028 6.1E-08 56.6 5.3 37 181-219 6-42 (176)
172 KOG1514 Origin recognition com 96.7 0.047 1E-06 57.5 14.7 134 157-299 394-545 (767)
173 TIGR01243 CDC48 AAA family ATP 96.7 0.0059 1.3E-07 67.1 8.7 46 159-204 178-234 (733)
174 PF07728 AAA_5: AAA domain (dy 96.7 0.0027 5.9E-08 54.2 4.9 41 185-230 2-42 (139)
175 TIGR02012 tigrfam_recA protein 96.6 0.0067 1.4E-07 59.3 8.0 99 171-275 43-143 (321)
176 PRK06620 hypothetical protein; 96.6 0.0045 9.8E-08 57.2 6.5 23 183-205 45-67 (214)
177 TIGR02236 recomb_radA DNA repa 96.6 0.013 2.9E-07 57.4 10.2 68 171-238 84-155 (310)
178 CHL00176 ftsH cell division pr 96.6 0.0047 1E-07 66.1 7.4 50 156-205 180-239 (638)
179 cd01133 F1-ATPase_beta F1 ATP 96.6 0.006 1.3E-07 58.0 7.4 92 182-275 69-173 (274)
180 PRK07399 DNA polymerase III su 96.6 0.015 3.3E-07 56.9 10.4 45 159-204 4-48 (314)
181 cd00983 recA RecA is a bacter 96.6 0.0076 1.7E-07 58.9 7.9 99 171-275 43-143 (325)
182 PF02562 PhoH: PhoH-like prote 96.6 0.011 2.4E-07 53.9 8.5 54 162-219 3-56 (205)
183 PRK15455 PrkA family serine pr 96.6 0.0025 5.5E-08 66.1 4.7 45 160-204 77-125 (644)
184 PF13671 AAA_33: AAA domain; P 96.6 0.0027 5.9E-08 54.3 4.3 21 184-204 1-21 (143)
185 COG0572 Udk Uridine kinase [Nu 96.6 0.0064 1.4E-07 55.5 6.7 79 181-266 7-85 (218)
186 KOG0733 Nuclear AAA ATPase (VC 96.6 0.0088 1.9E-07 61.8 8.3 93 159-275 190-292 (802)
187 PRK09354 recA recombinase A; P 96.5 0.0097 2.1E-07 58.7 8.4 100 170-275 47-148 (349)
188 CHL00195 ycf46 Ycf46; Provisio 96.5 0.14 3E-06 53.3 17.4 47 158-204 227-281 (489)
189 PRK13695 putative NTPase; Prov 96.5 0.0035 7.6E-08 55.9 5.0 22 184-205 2-23 (174)
190 KOG0991 Replication factor C, 96.5 0.0062 1.3E-07 55.6 6.4 45 158-204 26-70 (333)
191 PRK06067 flagellar accessory p 96.5 0.019 4E-07 53.9 10.0 101 171-275 14-130 (234)
192 TIGR01243 CDC48 AAA family ATP 96.5 0.023 5.1E-07 62.5 12.2 47 158-204 452-509 (733)
193 PRK00409 recombination and DNA 96.5 0.026 5.7E-07 62.1 12.3 155 181-345 326-509 (782)
194 PRK09270 nucleoside triphospha 96.5 0.013 2.9E-07 54.7 8.8 26 179-204 30-55 (229)
195 PF14532 Sigma54_activ_2: Sigm 96.5 0.0064 1.4E-07 51.9 6.1 44 162-205 1-44 (138)
196 PRK11034 clpA ATP-dependent Cl 96.5 0.013 2.8E-07 64.0 9.7 46 159-204 458-510 (758)
197 TIGR02239 recomb_RAD51 DNA rep 96.5 0.016 3.5E-07 56.8 9.4 107 169-275 83-201 (316)
198 PTZ00361 26 proteosome regulat 96.4 0.0046 1E-07 63.1 5.7 52 159-212 183-245 (438)
199 KOG0735 AAA+-type ATPase [Post 96.4 0.011 2.3E-07 62.2 8.1 96 156-275 405-504 (952)
200 COG0593 DnaA ATPase involved i 96.4 0.013 2.7E-07 58.9 8.1 121 159-304 88-218 (408)
201 cd01121 Sms Sms (bacterial rad 96.3 0.017 3.7E-07 57.9 8.8 100 169-275 69-168 (372)
202 PF00485 PRK: Phosphoribulokin 96.3 0.014 3.1E-07 52.9 7.6 83 184-269 1-87 (194)
203 PTZ00035 Rad51 protein; Provis 96.3 0.04 8.8E-07 54.5 11.3 107 169-275 105-223 (337)
204 COG1618 Predicted nucleotide k 96.3 0.0039 8.4E-08 53.7 3.3 23 182-204 5-27 (179)
205 PRK12727 flagellar biosynthesi 96.3 0.25 5.5E-06 51.3 17.0 23 182-204 350-372 (559)
206 TIGR01359 UMP_CMP_kin_fam UMP- 96.3 0.028 6.1E-07 50.3 9.2 21 184-204 1-21 (183)
207 PRK08058 DNA polymerase III su 96.2 0.048 1E-06 53.9 11.5 43 161-204 7-50 (329)
208 TIGR02858 spore_III_AA stage I 96.2 0.059 1.3E-06 51.6 11.7 131 167-306 97-231 (270)
209 KOG0734 AAA+-type ATPase conta 96.2 0.026 5.7E-07 57.5 9.5 51 158-208 303-363 (752)
210 cd03247 ABCC_cytochrome_bd The 96.2 0.028 6.2E-07 50.2 9.0 24 182-205 28-51 (178)
211 PLN00020 ribulose bisphosphate 96.2 0.012 2.5E-07 58.1 6.8 31 180-212 146-176 (413)
212 TIGR03499 FlhF flagellar biosy 96.2 0.022 4.7E-07 55.1 8.6 41 181-221 193-233 (282)
213 PRK05703 flhF flagellar biosyn 96.2 0.089 1.9E-06 53.8 13.4 40 182-221 221-260 (424)
214 PRK12723 flagellar biosynthesi 96.1 0.15 3.3E-06 51.3 14.6 101 181-289 173-282 (388)
215 TIGR00064 ftsY signal recognit 96.1 0.05 1.1E-06 52.2 10.6 39 181-221 71-109 (272)
216 KOG0744 AAA+-type ATPase [Post 96.1 0.015 3.2E-07 55.7 6.7 79 182-275 177-260 (423)
217 KOG1969 DNA replication checkp 96.1 0.016 3.5E-07 61.1 7.5 73 180-277 324-399 (877)
218 PRK11889 flhF flagellar biosyn 96.1 0.092 2E-06 52.5 12.5 24 181-204 240-263 (436)
219 PRK15429 formate hydrogenlyase 96.1 0.048 1E-06 59.6 11.7 47 159-205 376-422 (686)
220 PF13238 AAA_18: AAA domain; P 96.1 0.0037 8.1E-08 52.2 2.4 20 185-204 1-20 (129)
221 PRK11608 pspF phage shock prot 96.1 0.028 6.1E-07 55.5 8.9 46 159-204 6-51 (326)
222 TIGR00959 ffh signal recogniti 96.1 0.072 1.6E-06 54.4 12.0 24 181-204 98-121 (428)
223 TIGR03877 thermo_KaiC_1 KaiC d 96.1 0.029 6.3E-07 52.7 8.6 103 170-276 9-137 (237)
224 PRK08233 hypothetical protein; 96.1 0.0053 1.2E-07 54.9 3.4 24 182-205 3-26 (182)
225 PTZ00301 uridine kinase; Provi 96.0 0.0066 1.4E-07 55.8 4.0 23 182-204 3-25 (210)
226 cd02025 PanK Pantothenate kina 96.0 0.025 5.3E-07 52.5 7.8 73 184-263 1-76 (220)
227 cd03238 ABC_UvrA The excision 96.0 0.067 1.5E-06 47.7 10.2 23 182-204 21-43 (176)
228 PRK05480 uridine/cytidine kina 96.0 0.0058 1.3E-07 56.2 3.5 24 181-204 5-28 (209)
229 cd03281 ABC_MSH5_euk MutS5 hom 96.0 0.0099 2.1E-07 54.9 5.0 119 182-308 29-158 (213)
230 PRK06547 hypothetical protein; 96.0 0.01 2.2E-07 52.8 4.8 34 170-205 5-38 (172)
231 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.0 0.08 1.7E-06 45.5 10.4 24 182-205 26-49 (144)
232 COG1121 ZnuC ABC-type Mn/Zn tr 96.0 0.1 2.2E-06 49.0 11.6 124 182-308 30-203 (254)
233 cd03216 ABC_Carb_Monos_I This 96.0 0.029 6.3E-07 49.4 7.7 111 182-305 26-143 (163)
234 PRK14722 flhF flagellar biosyn 96.0 0.062 1.3E-06 53.7 10.8 86 182-276 137-226 (374)
235 TIGR00235 udk uridine kinase. 96.0 0.0061 1.3E-07 56.0 3.4 24 181-204 5-28 (207)
236 PF13604 AAA_30: AAA domain; P 96.0 0.048 1E-06 49.6 9.3 23 182-204 18-40 (196)
237 TIGR01817 nifA Nif-specific re 96.0 0.13 2.8E-06 54.5 13.9 50 156-205 193-242 (534)
238 COG0542 clpA ATP-binding subun 96.0 0.011 2.4E-07 63.7 5.8 44 159-204 170-213 (786)
239 PF00448 SRP54: SRP54-type pro 96.0 0.022 4.8E-07 51.8 7.0 38 182-221 1-38 (196)
240 PRK00771 signal recognition pa 95.9 0.054 1.2E-06 55.4 10.4 24 181-204 94-117 (437)
241 COG1875 NYN ribonuclease and A 95.9 0.034 7.3E-07 54.3 8.3 130 159-299 221-384 (436)
242 PRK13531 regulatory ATPase Rav 95.9 0.01 2.2E-07 60.8 4.9 43 159-205 20-62 (498)
243 COG1066 Sms Predicted ATP-depe 95.9 0.057 1.2E-06 53.6 9.8 102 166-275 77-178 (456)
244 cd03285 ABC_MSH2_euk MutS2 hom 95.9 0.018 3.8E-07 53.6 6.0 153 181-344 29-215 (222)
245 cd02019 NK Nucleoside/nucleoti 95.8 0.0065 1.4E-07 45.1 2.5 22 184-205 1-22 (69)
246 cd03115 SRP The signal recogni 95.8 0.09 2E-06 46.6 10.4 21 184-204 2-22 (173)
247 smart00534 MUTSac ATPase domai 95.8 0.014 3.1E-07 52.6 5.2 21 184-204 1-21 (185)
248 cd03230 ABC_DR_subfamily_A Thi 95.8 0.059 1.3E-06 47.9 9.2 24 182-205 26-49 (173)
249 PRK04328 hypothetical protein; 95.8 0.041 8.8E-07 52.2 8.5 101 171-275 12-138 (249)
250 COG1222 RPT1 ATP-dependent 26S 95.8 0.039 8.3E-07 53.8 8.2 124 159-308 151-304 (406)
251 cd03229 ABC_Class3 This class 95.8 0.053 1.2E-06 48.4 8.9 23 182-204 26-48 (178)
252 cd03283 ABC_MutS-like MutS-lik 95.8 0.12 2.5E-06 47.3 11.1 22 183-204 26-47 (199)
253 PRK06762 hypothetical protein; 95.8 0.0076 1.7E-07 53.2 3.2 23 182-204 2-24 (166)
254 TIGR02974 phageshock_pspF psp 95.8 0.06 1.3E-06 53.2 9.9 45 161-205 1-45 (329)
255 PRK10867 signal recognition pa 95.8 0.11 2.5E-06 53.0 11.9 24 181-204 99-122 (433)
256 cd03280 ABC_MutS2 MutS2 homolo 95.8 0.0093 2E-07 54.5 3.8 22 182-203 28-49 (200)
257 PRK11823 DNA repair protein Ra 95.8 0.063 1.4E-06 55.3 10.2 101 168-275 66-166 (446)
258 KOG2228 Origin recognition com 95.8 0.054 1.2E-06 52.4 8.8 145 159-308 24-186 (408)
259 cd03228 ABCC_MRP_Like The MRP 95.7 0.074 1.6E-06 47.2 9.3 25 181-205 27-51 (171)
260 PF07724 AAA_2: AAA domain (Cd 95.7 0.025 5.5E-07 50.2 6.2 42 181-224 2-44 (171)
261 cd03223 ABCD_peroxisomal_ALDP 95.7 0.15 3.3E-06 45.0 11.1 24 182-205 27-50 (166)
262 PRK14974 cell division protein 95.7 0.22 4.8E-06 49.2 13.2 24 181-204 139-162 (336)
263 TIGR00416 sms DNA repair prote 95.7 0.068 1.5E-06 55.2 10.0 104 165-275 77-180 (454)
264 COG4608 AppF ABC-type oligopep 95.7 0.055 1.2E-06 50.9 8.5 94 181-277 38-139 (268)
265 TIGR00708 cobA cob(I)alamin ad 95.7 0.06 1.3E-06 47.6 8.2 119 182-304 5-140 (173)
266 COG2884 FtsE Predicted ATPase 95.7 0.1 2.2E-06 46.5 9.5 56 252-308 142-201 (223)
267 cd03246 ABCC_Protease_Secretio 95.6 0.065 1.4E-06 47.6 8.6 23 182-204 28-50 (173)
268 PRK03839 putative kinase; Prov 95.6 0.0085 1.8E-07 53.7 2.9 21 184-204 2-22 (180)
269 PRK05439 pantothenate kinase; 95.6 0.067 1.4E-06 52.1 9.2 81 179-266 83-166 (311)
270 TIGR00150 HI0065_YjeE ATPase, 95.6 0.018 4E-07 48.6 4.7 40 166-205 6-45 (133)
271 PF01583 APS_kinase: Adenylyls 95.6 0.014 3E-07 50.8 4.0 36 182-219 2-37 (156)
272 TIGR01360 aden_kin_iso1 adenyl 95.6 0.01 2.3E-07 53.3 3.3 24 181-204 2-25 (188)
273 TIGR03881 KaiC_arch_4 KaiC dom 95.6 0.11 2.4E-06 48.3 10.4 102 170-275 8-131 (229)
274 COG0467 RAD55 RecA-superfamily 95.6 0.016 3.5E-07 55.3 4.7 95 177-275 18-134 (260)
275 PRK14721 flhF flagellar biosyn 95.6 0.2 4.4E-06 50.9 12.7 23 182-204 191-213 (420)
276 PRK08533 flagellar accessory p 95.6 0.088 1.9E-06 49.2 9.6 48 181-232 23-71 (230)
277 PRK08769 DNA polymerase III su 95.6 0.45 9.7E-06 46.7 14.8 38 166-204 11-48 (319)
278 TIGR00554 panK_bact pantothena 95.5 0.068 1.5E-06 51.6 8.9 79 180-266 60-142 (290)
279 PF03308 ArgK: ArgK protein; 95.5 0.018 4E-07 53.9 4.7 64 167-230 14-77 (266)
280 TIGR03575 selen_PSTK_euk L-ser 95.5 0.039 8.4E-07 54.4 7.2 21 185-205 2-22 (340)
281 COG1419 FlhF Flagellar GTP-bin 95.5 0.34 7.3E-06 48.5 13.6 102 181-290 202-310 (407)
282 PF07726 AAA_3: ATPase family 95.5 0.014 3E-07 48.8 3.3 41 185-230 2-42 (131)
283 cd03244 ABCC_MRP_domain2 Domai 95.5 0.16 3.4E-06 47.0 11.0 24 182-205 30-53 (221)
284 PRK12724 flagellar biosynthesi 95.5 0.13 2.8E-06 52.0 10.8 23 182-204 223-245 (432)
285 cd01122 GP4d_helicase GP4d_hel 95.5 0.2 4.4E-06 47.9 12.0 53 181-236 29-82 (271)
286 TIGR00390 hslU ATP-dependent p 95.5 0.038 8.3E-07 55.6 7.0 52 159-212 12-75 (441)
287 PRK05022 anaerobic nitric oxid 95.5 0.096 2.1E-06 55.1 10.4 48 158-205 186-233 (509)
288 TIGR03522 GldA_ABC_ATP gliding 95.5 0.12 2.7E-06 50.3 10.6 24 182-205 28-51 (301)
289 PRK10733 hflB ATP-dependent me 95.4 0.082 1.8E-06 57.2 10.0 46 159-204 152-207 (644)
290 PRK06002 fliI flagellum-specif 95.4 0.078 1.7E-06 54.1 9.2 89 182-275 165-264 (450)
291 PF12775 AAA_7: P-loop contain 95.4 0.027 5.9E-07 54.0 5.7 33 169-204 23-55 (272)
292 TIGR03771 anch_rpt_ABC anchore 95.4 0.19 4E-06 46.7 11.2 24 182-205 6-29 (223)
293 cd01129 PulE-GspE PulE/GspE Th 95.4 0.074 1.6E-06 50.8 8.6 119 162-299 62-180 (264)
294 COG1223 Predicted ATPase (AAA+ 95.4 0.12 2.7E-06 48.2 9.4 49 157-205 119-174 (368)
295 PRK14723 flhF flagellar biosyn 95.4 0.18 4E-06 54.8 12.3 23 182-204 185-207 (767)
296 PRK05986 cob(I)alamin adenolsy 95.4 0.12 2.6E-06 46.5 9.2 119 182-304 22-158 (191)
297 KOG1532 GTPase XAB1, interacts 95.4 0.012 2.7E-07 54.9 2.9 59 180-238 17-85 (366)
298 cd00267 ABC_ATPase ABC (ATP-bi 95.3 0.085 1.8E-06 46.0 8.1 110 182-304 25-140 (157)
299 PRK04040 adenylate kinase; Pro 95.3 0.013 2.9E-07 52.9 3.1 23 182-204 2-24 (188)
300 PRK00131 aroK shikimate kinase 95.3 0.014 3E-07 51.7 3.1 23 182-204 4-26 (175)
301 PRK12726 flagellar biosynthesi 95.3 0.21 4.5E-06 49.8 11.5 89 181-276 205-296 (407)
302 TIGR01420 pilT_fam pilus retra 95.3 0.065 1.4E-06 53.3 8.2 105 182-299 122-226 (343)
303 COG4618 ArpD ABC-type protease 95.3 0.11 2.3E-06 53.0 9.5 23 182-204 362-384 (580)
304 PRK00625 shikimate kinase; Pro 95.3 0.013 2.8E-07 52.2 2.8 21 184-204 2-22 (173)
305 COG1703 ArgK Putative periplas 95.3 0.025 5.5E-07 53.8 4.8 62 169-230 38-99 (323)
306 PRK09519 recA DNA recombinatio 95.3 0.075 1.6E-06 57.8 9.0 101 169-275 46-148 (790)
307 cd02023 UMPK Uridine monophosp 95.3 0.011 2.5E-07 53.7 2.5 21 184-204 1-21 (198)
308 cd01135 V_A-ATPase_B V/A-type 95.3 0.068 1.5E-06 50.9 7.7 94 182-275 69-176 (276)
309 TIGR02868 CydC thiol reductant 95.3 0.26 5.6E-06 52.2 13.1 24 181-204 360-383 (529)
310 cd03282 ABC_MSH4_euk MutS4 hom 95.3 0.02 4.4E-07 52.4 4.1 23 182-204 29-51 (204)
311 PRK05201 hslU ATP-dependent pr 95.2 0.044 9.5E-07 55.2 6.6 53 158-212 14-78 (443)
312 cd03217 ABC_FeS_Assembly ABC-t 95.2 0.12 2.6E-06 47.1 9.1 25 181-205 25-49 (200)
313 TIGR02322 phosphon_PhnN phosph 95.2 0.015 3.3E-07 51.9 3.1 23 183-205 2-24 (179)
314 PRK14738 gmk guanylate kinase; 95.2 0.018 3.9E-07 52.9 3.5 31 174-204 5-35 (206)
315 cd02028 UMPK_like Uridine mono 95.2 0.015 3.3E-07 52.1 3.0 21 184-204 1-21 (179)
316 cd01130 VirB11-like_ATPase Typ 95.2 0.067 1.5E-06 48.2 7.1 118 167-299 13-131 (186)
317 PRK00889 adenylylsulfate kinas 95.1 0.019 4.1E-07 51.2 3.5 24 181-204 3-26 (175)
318 cd03222 ABC_RNaseL_inhibitor T 95.1 0.23 5.1E-06 44.3 10.4 23 182-204 25-47 (177)
319 PF00158 Sigma54_activat: Sigm 95.1 0.05 1.1E-06 48.2 6.1 45 161-205 1-45 (168)
320 PRK05342 clpX ATP-dependent pr 95.1 0.071 1.5E-06 54.2 7.9 47 158-204 70-130 (412)
321 cd03284 ABC_MutS1 MutS1 homolo 95.1 0.35 7.5E-06 44.7 11.9 21 183-203 31-51 (216)
322 TIGR01425 SRP54_euk signal rec 95.1 0.15 3.2E-06 51.9 10.0 24 181-204 99-122 (429)
323 PRK00279 adk adenylate kinase; 95.1 0.12 2.7E-06 47.6 8.8 21 184-204 2-22 (215)
324 PF13481 AAA_25: AAA domain; P 95.1 0.031 6.7E-07 50.5 4.6 42 182-223 32-81 (193)
325 cd03369 ABCC_NFT1 Domain 2 of 95.0 0.38 8.2E-06 44.0 11.9 24 181-204 33-56 (207)
326 TIGR03263 guanyl_kin guanylate 95.0 0.019 4.1E-07 51.3 3.2 22 183-204 2-23 (180)
327 COG1428 Deoxynucleoside kinase 95.0 0.016 3.6E-07 52.3 2.7 24 182-205 4-27 (216)
328 cd02024 NRK1 Nicotinamide ribo 95.0 0.015 3.3E-07 52.4 2.4 22 184-205 1-22 (187)
329 PF00625 Guanylate_kin: Guanyl 95.0 0.029 6.2E-07 50.4 4.3 36 182-219 2-37 (183)
330 PRK06217 hypothetical protein; 95.0 0.017 3.7E-07 51.9 2.8 22 184-205 3-24 (183)
331 PRK13947 shikimate kinase; Pro 95.0 0.017 3.7E-07 51.1 2.8 21 184-204 3-23 (171)
332 PRK10416 signal recognition pa 95.0 0.13 2.8E-06 50.5 9.1 24 181-204 113-136 (318)
333 PF03205 MobB: Molybdopterin g 95.0 0.033 7.1E-07 47.7 4.3 38 183-222 1-39 (140)
334 cd01125 repA Hexameric Replica 95.0 0.14 3E-06 48.1 9.0 21 184-204 3-23 (239)
335 cd02021 GntK Gluconate kinase 95.0 0.017 3.6E-07 50.0 2.5 22 184-205 1-22 (150)
336 PF00910 RNA_helicase: RNA hel 95.0 0.016 3.4E-07 47.2 2.2 20 185-204 1-20 (107)
337 COG0714 MoxR-like ATPases [Gen 95.0 0.061 1.3E-06 53.2 6.8 63 159-230 24-86 (329)
338 PRK05973 replicative DNA helic 95.0 0.17 3.8E-06 47.3 9.4 46 181-230 63-108 (237)
339 PF08298 AAA_PrkA: PrkA AAA do 94.9 0.033 7.3E-07 54.5 4.7 48 157-204 59-110 (358)
340 cd03243 ABC_MutS_homologs The 94.9 0.026 5.5E-07 51.7 3.8 22 183-204 30-51 (202)
341 PF00154 RecA: recA bacterial 94.9 0.084 1.8E-06 51.6 7.4 91 180-276 51-142 (322)
342 COG3640 CooC CO dehydrogenase 94.9 0.04 8.6E-07 50.6 4.8 45 184-229 2-46 (255)
343 cd04159 Arl10_like Arl10-like 94.9 0.083 1.8E-06 45.3 6.8 21 185-205 2-22 (159)
344 PF05659 RPW8: Arabidopsis bro 94.9 0.26 5.6E-06 42.4 9.5 107 2-130 8-114 (147)
345 cd00227 CPT Chloramphenicol (C 94.9 0.021 4.7E-07 50.8 3.0 22 183-204 3-24 (175)
346 COG0003 ArsA Predicted ATPase 94.9 0.039 8.3E-07 54.0 5.0 47 182-230 2-48 (322)
347 cd00071 GMPK Guanosine monopho 94.9 0.023 5.1E-07 48.5 3.1 21 184-204 1-21 (137)
348 cd02020 CMPK Cytidine monophos 94.9 0.018 4E-07 49.3 2.5 21 184-204 1-21 (147)
349 KOG0729 26S proteasome regulat 94.8 0.17 3.7E-06 47.3 8.7 53 158-212 176-239 (435)
350 COG0464 SpoVK ATPases of the A 94.8 0.053 1.2E-06 56.9 6.4 93 159-275 242-345 (494)
351 cd03213 ABCG_EPDR ABCG transpo 94.8 0.29 6.3E-06 44.4 10.4 24 181-204 34-57 (194)
352 PRK12597 F0F1 ATP synthase sub 94.8 0.08 1.7E-06 54.3 7.3 94 181-275 142-247 (461)
353 PRK08972 fliI flagellum-specif 94.8 0.1 2.2E-06 53.0 8.0 89 181-275 161-262 (444)
354 PLN02318 phosphoribulokinase/u 94.8 0.037 8.1E-07 57.9 4.9 34 172-205 55-88 (656)
355 TIGR02655 circ_KaiC circadian 94.8 0.13 2.8E-06 53.8 9.0 104 168-275 249-363 (484)
356 PRK15453 phosphoribulokinase; 94.8 0.15 3.3E-06 48.6 8.6 81 181-264 4-89 (290)
357 KOG0733 Nuclear AAA ATPase (VC 94.8 0.066 1.4E-06 55.6 6.5 123 161-308 513-661 (802)
358 PRK13537 nodulation ABC transp 94.8 0.25 5.4E-06 48.3 10.5 24 182-205 33-56 (306)
359 PRK10820 DNA-binding transcrip 94.8 0.17 3.7E-06 53.4 9.9 47 158-204 203-249 (520)
360 PRK00300 gmk guanylate kinase; 94.8 0.025 5.4E-07 51.7 3.3 24 182-205 5-28 (205)
361 PRK06995 flhF flagellar biosyn 94.8 0.24 5.2E-06 51.2 10.6 23 182-204 256-278 (484)
362 PF06745 KaiC: KaiC; InterPro 94.8 0.052 1.1E-06 50.5 5.4 92 180-274 17-124 (226)
363 PRK10751 molybdopterin-guanine 94.8 0.03 6.4E-07 49.7 3.5 24 181-204 5-28 (173)
364 COG0563 Adk Adenylate kinase a 94.7 0.022 4.8E-07 50.9 2.7 22 184-205 2-23 (178)
365 cd01878 HflX HflX subfamily. 94.7 0.088 1.9E-06 48.0 6.8 26 181-206 40-65 (204)
366 PRK13949 shikimate kinase; Pro 94.7 0.024 5.1E-07 50.3 2.9 21 184-204 3-23 (169)
367 PRK03846 adenylylsulfate kinas 94.7 0.029 6.2E-07 51.2 3.5 25 180-204 22-46 (198)
368 COG1102 Cmk Cytidylate kinase 94.7 0.021 4.5E-07 49.4 2.3 22 184-205 2-23 (179)
369 TIGR02902 spore_lonB ATP-depen 94.7 0.045 9.9E-07 57.7 5.3 44 159-204 65-108 (531)
370 COG1936 Predicted nucleotide k 94.7 0.024 5.2E-07 49.6 2.7 20 184-203 2-21 (180)
371 TIGR01040 V-ATPase_V1_B V-type 94.7 0.11 2.4E-06 53.0 7.7 95 181-275 140-257 (466)
372 PRK08149 ATP synthase SpaL; Va 94.7 0.12 2.6E-06 52.6 8.0 91 181-275 150-251 (428)
373 PF08477 Miro: Miro-like prote 94.6 0.029 6.3E-07 46.1 3.0 22 185-206 2-23 (119)
374 COG1084 Predicted GTPase [Gene 94.6 0.32 6.9E-06 47.0 10.2 31 179-209 165-196 (346)
375 PRK14530 adenylate kinase; Pro 94.6 0.025 5.4E-07 52.3 2.9 22 183-204 4-25 (215)
376 PRK13545 tagH teichoic acids e 94.6 0.38 8.3E-06 50.2 11.7 24 182-205 50-73 (549)
377 PTZ00088 adenylate kinase 1; P 94.6 0.036 7.9E-07 51.7 3.9 21 184-204 8-28 (229)
378 COG1124 DppF ABC-type dipeptid 94.5 0.05 1.1E-06 50.3 4.4 24 181-204 32-55 (252)
379 PRK10078 ribose 1,5-bisphospho 94.5 0.031 6.8E-07 50.3 3.2 23 183-205 3-25 (186)
380 TIGR00764 lon_rel lon-related 94.5 0.096 2.1E-06 56.1 7.3 74 158-238 17-92 (608)
381 PRK07993 DNA polymerase III su 94.5 1.7 3.6E-05 43.1 15.5 123 166-303 9-147 (334)
382 PTZ00185 ATPase alpha subunit; 94.5 0.14 3.1E-06 52.8 8.0 94 181-276 188-300 (574)
383 PRK12339 2-phosphoglycerate ki 94.5 0.035 7.6E-07 50.5 3.4 24 182-205 3-26 (197)
384 PRK09435 membrane ATPase/prote 94.4 0.064 1.4E-06 52.8 5.4 37 168-204 42-78 (332)
385 PRK13948 shikimate kinase; Pro 94.4 0.034 7.5E-07 49.9 3.2 24 181-204 9-32 (182)
386 PRK05537 bifunctional sulfate 94.4 0.062 1.3E-06 57.0 5.6 49 156-204 366-414 (568)
387 cd00464 SK Shikimate kinase (S 94.4 0.029 6.4E-07 48.5 2.7 20 185-204 2-21 (154)
388 TIGR01313 therm_gnt_kin carboh 94.4 0.025 5.5E-07 49.6 2.3 20 185-204 1-20 (163)
389 TIGR03600 phage_DnaB phage rep 94.4 1.9 4.1E-05 44.2 16.4 72 163-238 176-248 (421)
390 PRK10463 hydrogenase nickel in 94.4 0.092 2E-06 50.4 6.2 92 180-276 102-195 (290)
391 COG2019 AdkA Archaeal adenylat 94.4 0.04 8.6E-07 47.9 3.3 46 182-240 4-51 (189)
392 KOG0736 Peroxisome assembly fa 94.4 0.28 6E-06 52.5 10.0 94 159-276 672-775 (953)
393 PHA02774 E1; Provisional 94.4 0.21 4.6E-06 52.2 9.1 50 167-221 420-469 (613)
394 KOG4252 GTP-binding protein [S 94.3 0.065 1.4E-06 46.8 4.5 106 183-339 21-129 (246)
395 PRK14527 adenylate kinase; Pro 94.3 0.036 7.9E-07 50.1 3.2 24 181-204 5-28 (191)
396 TIGR01070 mutS1 DNA mismatch r 94.3 0.47 1E-05 52.9 12.3 155 181-345 591-776 (840)
397 COG2842 Uncharacterized ATPase 94.3 0.34 7.3E-06 46.2 9.6 118 157-288 70-190 (297)
398 cd01132 F1_ATPase_alpha F1 ATP 94.3 0.19 4E-06 47.9 7.9 97 182-284 69-181 (274)
399 TIGR00176 mobB molybdopterin-g 94.3 0.04 8.8E-07 48.1 3.3 33 184-218 1-34 (155)
400 PRK11388 DNA-binding transcrip 94.3 0.21 4.5E-06 54.2 9.5 48 158-205 324-371 (638)
401 COG3267 ExeA Type II secretory 94.3 1.4 3.1E-05 41.2 13.4 99 181-286 50-154 (269)
402 PRK07594 type III secretion sy 94.3 0.16 3.4E-06 51.8 7.8 46 181-230 154-200 (433)
403 PRK13975 thymidylate kinase; P 94.3 0.037 8.1E-07 50.1 3.1 22 183-204 3-24 (196)
404 PRK14737 gmk guanylate kinase; 94.3 0.052 1.1E-06 49.0 4.0 25 181-205 3-27 (186)
405 PF00006 ATP-synt_ab: ATP synt 94.2 0.095 2.1E-06 48.3 5.7 87 182-274 15-114 (215)
406 PF03266 NTPase_1: NTPase; In 94.2 0.034 7.5E-07 49.2 2.7 21 185-205 2-22 (168)
407 TIGR00958 3a01208 Conjugate Tr 94.2 0.69 1.5E-05 50.9 13.4 25 181-205 506-530 (711)
408 cd01852 AIG1 AIG1 (avrRpt2-ind 94.2 0.49 1.1E-05 42.9 10.4 22 184-205 2-23 (196)
409 PRK06761 hypothetical protein; 94.2 0.084 1.8E-06 50.7 5.4 23 183-205 4-26 (282)
410 cd02027 APSK Adenosine 5'-phos 94.2 0.035 7.6E-07 48.1 2.6 21 184-204 1-21 (149)
411 PRK08472 fliI flagellum-specif 94.2 0.14 3E-06 52.2 7.3 40 181-224 156-195 (434)
412 PRK08927 fliI flagellum-specif 94.2 0.17 3.7E-06 51.6 7.8 91 181-275 157-258 (442)
413 TIGR00750 lao LAO/AO transport 94.1 0.078 1.7E-06 51.7 5.3 37 169-205 21-57 (300)
414 cd01124 KaiC KaiC is a circadi 94.1 0.048 1E-06 48.8 3.6 43 184-230 1-43 (187)
415 KOG0739 AAA+-type ATPase [Post 94.1 0.2 4.4E-06 47.7 7.6 92 159-275 133-235 (439)
416 KOG0731 AAA+-type ATPase conta 94.1 0.2 4.2E-06 54.1 8.5 51 156-206 308-368 (774)
417 TIGR00665 DnaB replicative DNA 94.1 2.1 4.5E-05 44.1 16.0 66 168-237 182-248 (434)
418 PRK05057 aroK shikimate kinase 94.1 0.042 9.2E-07 48.8 3.0 23 182-204 4-26 (172)
419 cd01672 TMPK Thymidine monopho 94.1 0.1 2.2E-06 47.1 5.6 22 184-205 2-23 (200)
420 PRK13946 shikimate kinase; Pro 94.0 0.043 9.3E-07 49.4 3.0 23 182-204 10-32 (184)
421 PLN02200 adenylate kinase fami 94.0 0.046 1E-06 51.2 3.3 24 181-204 42-65 (234)
422 cd03287 ABC_MSH3_euk MutS3 hom 94.0 0.43 9.2E-06 44.3 9.7 118 182-308 31-158 (222)
423 cd00820 PEPCK_HprK Phosphoenol 94.0 0.051 1.1E-06 44.0 3.1 22 182-203 15-36 (107)
424 PF07693 KAP_NTPase: KAP famil 94.0 0.18 4E-06 49.5 7.8 41 165-205 2-43 (325)
425 PRK11174 cysteine/glutathione 94.0 0.54 1.2E-05 50.5 11.9 24 181-204 375-398 (588)
426 TIGR01650 PD_CobS cobaltochela 94.0 0.16 3.4E-06 49.7 7.0 65 157-230 43-107 (327)
427 cd02029 PRK_like Phosphoribulo 94.0 0.17 3.7E-06 48.0 7.0 80 184-266 1-85 (277)
428 cd01136 ATPase_flagellum-secre 94.0 0.25 5.3E-06 48.5 8.3 88 182-275 69-169 (326)
429 TIGR01193 bacteriocin_ABC ABC- 93.9 0.7 1.5E-05 50.8 12.9 24 181-204 499-522 (708)
430 PRK10923 glnG nitrogen regulat 93.9 0.33 7E-06 50.5 9.8 47 159-205 138-184 (469)
431 cd01134 V_A-ATPase_A V/A-type 93.9 0.54 1.2E-05 46.4 10.5 45 182-230 157-202 (369)
432 PF03193 DUF258: Protein of un 93.9 0.1 2.3E-06 45.6 5.0 36 165-205 23-58 (161)
433 PRK13765 ATP-dependent proteas 93.9 0.11 2.3E-06 55.8 6.1 76 157-238 29-105 (637)
434 TIGR00073 hypB hydrogenase acc 93.9 0.054 1.2E-06 49.7 3.4 25 180-204 20-44 (207)
435 cd04139 RalA_RalB RalA/RalB su 93.9 0.056 1.2E-06 46.9 3.4 23 184-206 2-24 (164)
436 TIGR02788 VirB11 P-type DNA tr 93.8 0.16 3.6E-06 49.7 6.9 93 182-283 144-236 (308)
437 PRK09280 F0F1 ATP synthase sub 93.8 0.21 4.6E-06 51.2 7.9 94 181-275 143-248 (463)
438 COG1126 GlnQ ABC-type polar am 93.8 0.082 1.8E-06 48.1 4.3 24 181-204 27-50 (240)
439 PRK08356 hypothetical protein; 93.8 0.061 1.3E-06 48.9 3.6 22 182-203 5-26 (195)
440 PRK04182 cytidylate kinase; Pr 93.8 0.049 1.1E-06 48.4 3.0 21 184-204 2-22 (180)
441 COG1100 GTPase SAR1 and relate 93.8 0.046 1E-06 50.3 2.9 23 183-205 6-28 (219)
442 COG0237 CoaE Dephospho-CoA kin 93.8 0.052 1.1E-06 49.5 3.1 23 182-204 2-24 (201)
443 PRK13409 putative ATPase RIL; 93.8 0.56 1.2E-05 50.3 11.4 24 182-205 365-388 (590)
444 PF13521 AAA_28: AAA domain; P 93.8 0.045 9.7E-07 48.1 2.6 20 185-204 2-21 (163)
445 KOG1051 Chaperone HSP104 and r 93.8 0.48 1E-05 52.2 10.8 115 159-288 562-685 (898)
446 PRK09302 circadian clock prote 93.7 0.32 7E-06 51.2 9.4 104 168-275 259-373 (509)
447 TIGR03497 FliI_clade2 flagella 93.7 0.34 7.3E-06 49.3 9.1 25 181-205 136-160 (413)
448 PRK06793 fliI flagellum-specif 93.7 0.21 4.5E-06 50.9 7.6 94 181-277 155-258 (432)
449 PRK06936 type III secretion sy 93.7 0.28 6E-06 50.1 8.4 89 181-275 161-262 (439)
450 TIGR03498 FliI_clade3 flagella 93.7 0.26 5.6E-06 50.1 8.2 24 182-205 140-163 (418)
451 PF00005 ABC_tran: ABC transpo 93.7 0.05 1.1E-06 46.1 2.7 24 182-205 11-34 (137)
452 PF02374 ArsA_ATPase: Anion-tr 93.7 0.065 1.4E-06 52.3 3.8 46 183-230 2-47 (305)
453 PRK06964 DNA polymerase III su 93.7 1.1 2.4E-05 44.4 12.4 43 264-307 131-176 (342)
454 PRK05688 fliI flagellum-specif 93.7 0.3 6.5E-06 50.0 8.6 89 181-275 167-268 (451)
455 PRK14532 adenylate kinase; Pro 93.7 0.05 1.1E-06 49.0 2.8 20 185-204 3-22 (188)
456 cd00544 CobU Adenosylcobinamid 93.6 0.18 3.9E-06 44.6 6.2 38 185-227 2-39 (169)
457 TIGR02173 cyt_kin_arch cytidyl 93.6 0.056 1.2E-06 47.7 3.0 21 184-204 2-22 (171)
458 PRK09825 idnK D-gluconate kina 93.6 0.056 1.2E-06 48.3 3.0 22 183-204 4-25 (176)
459 TIGR03305 alt_F1F0_F1_bet alte 93.6 0.19 4.1E-06 51.4 7.1 94 181-275 137-242 (449)
460 PF03029 ATP_bind_1: Conserved 93.6 0.054 1.2E-06 50.9 3.0 32 187-220 1-32 (238)
461 TIGR03878 thermo_KaiC_2 KaiC d 93.6 0.096 2.1E-06 49.9 4.7 41 180-222 34-74 (259)
462 COG4240 Predicted kinase [Gene 93.6 0.26 5.7E-06 45.1 7.1 85 180-265 48-133 (300)
463 TIGR01041 ATP_syn_B_arch ATP s 93.6 0.21 4.5E-06 51.4 7.3 94 182-275 141-248 (458)
464 PRK05922 type III secretion sy 93.6 0.32 7E-06 49.5 8.6 90 182-275 157-257 (434)
465 COG2812 DnaX DNA polymerase II 93.6 0.21 4.6E-06 51.8 7.5 142 158-308 15-164 (515)
466 PHA02244 ATPase-like protein 93.6 0.14 3.1E-06 50.7 6.0 43 158-204 95-141 (383)
467 cd01428 ADK Adenylate kinase ( 93.6 0.052 1.1E-06 49.0 2.7 20 185-204 2-21 (194)
468 PLN02348 phosphoribulokinase 93.6 0.094 2E-06 52.4 4.7 26 179-204 46-71 (395)
469 TIGR02030 BchI-ChlI magnesium 93.6 0.1 2.3E-06 51.5 5.0 44 159-204 4-47 (337)
470 TIGR03574 selen_PSTK L-seryl-t 93.5 0.046 1E-06 51.7 2.4 21 184-204 1-21 (249)
471 PF06068 TIP49: TIP49 C-termin 93.5 0.14 3.1E-06 50.4 5.8 55 158-214 23-80 (398)
472 TIGR01287 nifH nitrogenase iro 93.5 0.072 1.6E-06 51.2 3.7 22 183-204 1-22 (275)
473 COG0703 AroK Shikimate kinase 93.5 0.058 1.3E-06 47.5 2.8 28 183-212 3-30 (172)
474 PF06309 Torsin: Torsin; Inte 93.5 0.12 2.7E-06 43.0 4.5 46 160-205 26-76 (127)
475 CHL00059 atpA ATP synthase CF1 93.5 0.3 6.6E-06 50.2 8.3 89 182-276 141-244 (485)
476 TIGR00041 DTMP_kinase thymidyl 93.5 0.16 3.5E-06 45.9 5.8 23 183-205 4-26 (195)
477 PRK03731 aroL shikimate kinase 93.5 0.057 1.2E-06 47.8 2.7 22 183-204 3-24 (171)
478 PRK13768 GTPase; Provisional 93.5 0.097 2.1E-06 49.7 4.5 22 183-204 3-24 (253)
479 TIGR00960 3a0501s02 Type II (G 93.5 0.1 2.3E-06 48.1 4.6 23 182-204 29-51 (216)
480 PRK13407 bchI magnesium chelat 93.4 0.085 1.8E-06 52.0 4.1 47 156-204 5-51 (334)
481 PTZ00494 tuzin-like protein; P 93.4 2.6 5.7E-05 42.8 14.3 80 153-240 365-446 (664)
482 PRK11160 cysteine/glutathione 93.4 0.59 1.3E-05 50.0 10.9 24 181-204 365-388 (574)
483 PF01078 Mg_chelatase: Magnesi 93.4 0.15 3.2E-06 46.4 5.3 42 159-204 3-44 (206)
484 cd04101 RabL4 RabL4 (Rab-like4 93.4 0.51 1.1E-05 40.9 8.8 22 184-205 2-23 (164)
485 PRK12678 transcription termina 93.4 0.13 2.7E-06 53.8 5.4 100 170-275 405-513 (672)
486 PF06414 Zeta_toxin: Zeta toxi 93.4 0.096 2.1E-06 47.7 4.2 111 180-299 13-125 (199)
487 PRK09099 type III secretion sy 93.4 0.25 5.5E-06 50.5 7.6 25 181-205 162-186 (441)
488 TIGR01039 atpD ATP synthase, F 93.4 0.34 7.3E-06 49.6 8.5 94 181-275 142-247 (461)
489 cd01862 Rab7 Rab7 subfamily. 93.4 0.068 1.5E-06 46.9 3.1 22 184-205 2-23 (172)
490 cd02022 DPCK Dephospho-coenzym 93.4 0.056 1.2E-06 48.4 2.5 21 184-204 1-21 (179)
491 PRK14531 adenylate kinase; Pro 93.4 0.066 1.4E-06 48.1 3.0 22 183-204 3-24 (183)
492 PF01926 MMR_HSR1: 50S ribosom 93.4 0.064 1.4E-06 44.0 2.7 21 185-205 2-22 (116)
493 TIGR02782 TrbB_P P-type conjug 93.3 0.29 6.3E-06 47.6 7.7 89 183-284 133-223 (299)
494 TIGR01166 cbiO cobalt transpor 93.3 0.12 2.6E-06 46.7 4.6 24 182-205 18-41 (190)
495 PRK06820 type III secretion sy 93.3 0.44 9.4E-06 48.7 9.1 38 182-223 163-200 (440)
496 smart00072 GuKc Guanylate kina 93.3 0.093 2E-06 47.2 3.9 24 182-205 2-25 (184)
497 cd03269 ABC_putative_ATPase Th 93.3 0.12 2.6E-06 47.4 4.7 24 182-205 26-49 (210)
498 KOG0924 mRNA splicing factor A 93.3 0.59 1.3E-05 49.3 9.9 127 168-307 361-513 (1042)
499 PRK01184 hypothetical protein; 93.3 0.069 1.5E-06 47.9 3.0 21 183-204 2-22 (184)
500 PLN02165 adenylate isopentenyl 93.3 0.071 1.5E-06 52.2 3.3 25 181-205 42-66 (334)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=7.6e-66 Score=555.37 Aligned_cols=432 Identities=22% Similarity=0.339 Sum_probs=359.8
Q ss_pred CcchHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCCCcCCChHHHHHHHHHHHH
Q 041567 1 MDIKFRLFSERLRRVLAGEEVTLPDAAKQPIHNLHAEIEIVTSWLSEFEDDMSWLLLQKKGKDEIDNPDLATVMDEINCF 80 (467)
Q Consensus 1 M~a~v~~l~~kl~~~l~~~e~~~~~~~~~~~~~L~~~L~~i~~~l~~a~~~~~~~~~~~~~~~~~~~~~v~~Wl~~l~~~ 80 (467)
|++.++..++|+.+++ .+++..+.+.++.+..|++.|..++++++++++ .+.....+..|...++++
T Consensus 1 ~~~~~s~~~~~~~~~l-~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a------------~~~~~~~~~~~~e~~~~~ 67 (889)
T KOG4658|consen 1 MGACVSFGVEKLDQLL-NRESECLDGKDNYILELKENLKALQSALEDLDA------------KRDDLERRVNWEEDVGDL 67 (889)
T ss_pred CCeEEEEehhhHHHHH-HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh------------hcchHHHHHHHHHHHHHH
Confidence 7888899999999999 999999999999999999999999999999999 777888999999999999
Q ss_pred HhHHHHHHHHhHhhhhccccCCC---c--cc-chh--hhHHHHHHHHHHHHHHHHHhhhhchhhHHhhhhccccccc---
Q 041567 81 TCEFEKVIDTFINSITQQKSQSS---C--RK-DIC--DALQGLQSRITEINQRVQQLKHIDSEIIDEFRRAEVESSY--- 149 (467)
Q Consensus 81 ayd~ed~ld~~~~~~~~~~~~~~---~--~~-~~~--~~~~~i~~~i~~l~~~l~~i~~~~~~~~~~~~~~~~~~~~--- 149 (467)
+|+++|.++.|..........+. . .. +.+ ....+.+..+..+.+++..+. +..+.++.....
T Consensus 68 ~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l-------~~ve~l~~~~~~~~~ 140 (889)
T KOG4658|consen 68 VYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVL-------REVESLGSKGVFEVV 140 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHH-------HHHHHhccccceecc
Confidence 99999999999988765432220 0 11 111 222255555556666666555 555555433210
Q ss_pred --------cCCCCC-CCCCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCcc-ccCccceEEEEE
Q 041567 150 --------FLASSS-SKNRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSY-VKHYFDHLAWIP 219 (467)
Q Consensus 150 --------~~~~~~-~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-~~~~F~~~~wv~ 219 (467)
...+.| .+... ||.++.++.+.+.|..++. .+++|+||||+||||||+.++|+.. ++.+|+.++||.
T Consensus 141 ~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~ 217 (889)
T KOG4658|consen 141 GESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV 217 (889)
T ss_pred cccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE
Confidence 111223 22333 9999999999999998863 8999999999999999999999977 999999999999
Q ss_pred cCCCCCHHHHH-HHHHHhhCCCCccccCCCCCHHHHHHHHHHhhCCceEEEEEecCCCcchHHHHHHhhcCCCCCcEEEE
Q 041567 220 APYHYDAYQIL-DIVTMFLLPFSMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWSTNVLDVVREILLDNQNGSRVLI 298 (467)
Q Consensus 220 v~~~~~~~~~~-~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiv 298 (467)
||++++...++ +|+..++.... .......++++..|.+.|++|||||||||||+..+|+.+..++|...+||||++
T Consensus 218 VSk~f~~~~iq~~Il~~l~~~~~---~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~Kvvl 294 (889)
T KOG4658|consen 218 VSKEFTTRKIQQTILERLGLLDE---EWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVL 294 (889)
T ss_pred EcccccHHhHHHHHHHHhccCCc---ccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEE
Confidence 99999999999 99999998543 223334478999999999999999999999999999999999999999999999
Q ss_pred ecCccccccc--cc------------------cccc-----ccCCCChHHHHHHHHHHcCCChHHHHHHHhc-cCccc--
Q 041567 299 TLTRIKMVTR--FQ------------------FENG-----ESVRLDLVPTGGPLRVTYQGWPFLILYHGSI-SLEEN-- 350 (467)
Q Consensus 299 T~TR~~~v~~--~~------------------F~~~-----~~~~~~~~~~~~~i~~~c~GlPLai~~i~~~-~~~~~-- 350 (467)
| ||++.|+. |+ |... ....+.++++|++++++|+|+|||++++|+. +.|..
T Consensus 295 T-TRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~ 373 (889)
T KOG4658|consen 295 T-TRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQ 373 (889)
T ss_pred E-eccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHH
Confidence 9 99999998 55 4433 3334558999999999999999999999999 98887
Q ss_pred -ch-------hhc--------cchhhHHHHhhcCCchhhHHHHhhhccCCCCCccChhHHHHHHHHcCCCCC-----CHH
Q 041567 351 -IR-------EVF--------ETPLGLLIVICCKLPFHLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPD-----NSE 409 (467)
Q Consensus 351 -~~-------~~l--------~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~Li~~W~aeg~i~~-----~~e 409 (467)
|. +.+ ..+.++|.+||+.||+++|.||+|||+||+||.|+++.|+.+|+||||+.+ ..+
T Consensus 374 eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~ 453 (889)
T KOG4658|consen 374 EWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAE 453 (889)
T ss_pred HHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchh
Confidence 22 221 118899999999999999999999999999999999999999999999976 778
Q ss_pred HHHHHHHHHHHhCccccccccCCCCccceEEeChhHHHHHHHhhc-----ccceEEe
Q 041567 410 ATAEKYLEQLINRGFVDARKRRAGVTINTCSVPGRCHPVLLAVAF-----KAEFIFF 461 (467)
Q Consensus 410 ~~~~~~l~~Lv~~~ll~~~~~~~~~~~~~~~mHdlv~~~a~~~~~-----~e~~~~~ 461 (467)
+.|+.|+.+|+++||++..... ++...|+|||+||++|.++|+ +++++..
T Consensus 454 d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~ 508 (889)
T KOG4658|consen 454 DVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVS 508 (889)
T ss_pred cchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEE
Confidence 9999999999999999987643 566889999999999999999 7775543
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.3e-42 Score=337.53 Aligned_cols=240 Identities=31% Similarity=0.481 Sum_probs=193.2
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHhhCCCCc
Q 041567 164 LDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMFLLPFSM 242 (467)
Q Consensus 164 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l~~~~~~ 242 (467)
||.++++|.+.|....++.++|+|+||||+||||||..++++..++.+|+.++|+++++..+...++ .|+.+++.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 7899999999999866789999999999999999999999976699999999999999999999999 999999986431
Q ss_pred cccCCCCCHHHHHHHHHHhhCCceEEEEEecCCCcchHHHHHHhhcCCCCCcEEEEecCccccccc-cc-----------
Q 041567 243 LSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWSTNVLDVVREILLDNQNGSRVLITLTRIKMVTR-FQ----------- 310 (467)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivT~TR~~~v~~-~~----------- 310 (467)
. ....+.++....+++.|.++++||||||||+...|+.+...++....|++|||| ||+..++. ++
T Consensus 81 ~--~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvT-TR~~~v~~~~~~~~~~~~l~~L 157 (287)
T PF00931_consen 81 I--SDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVT-TRDRSVAGSLGGTDKVIELEPL 157 (287)
T ss_dssp S--SCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEE-ESCGGGGTTHHSCEEEEECSS-
T ss_pred c--ccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccc-cccccccccccccccccccccc
Confidence 1 145677889999999999999999999999999999999888888889999999 99998876 32
Q ss_pred --------cccc----c-cCCCChHHHHHHHHHHcCCChHHHHHHHhc-cCccc---chhhc--------------cchh
Q 041567 311 --------FENG----E-SVRLDLVPTGGPLRVTYQGWPFLILYHGSI-SLEEN---IREVF--------------ETPL 359 (467)
Q Consensus 311 --------F~~~----~-~~~~~~~~~~~~i~~~c~GlPLai~~i~~~-~~~~~---~~~~l--------------~~i~ 359 (467)
|... . ..++.+.+.+++|+++|+|+||||+++|++ +.+.. |...+ ..+.
T Consensus 158 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~ 237 (287)
T PF00931_consen 158 SEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVF 237 (287)
T ss_dssp -HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3332 1 234667889999999999999999999999 66544 22111 1189
Q ss_pred hHHHHhhcCCchhhHHHHhhhccCCCCCccChhHHHHHHHHcCCCCC
Q 041567 360 GLLIVICCKLPFHLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPD 406 (467)
Q Consensus 360 ~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~Li~~W~aeg~i~~ 406 (467)
.++.+||+.||+++|.||+|||+||+++.|+++.|+++|++||||..
T Consensus 238 ~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 238 SALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 99999999999999999999999999999999999999999999964
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.3e-36 Score=341.92 Aligned_cols=274 Identities=17% Similarity=0.196 Sum_probs=213.0
Q ss_pred CCCCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEc---CCC---------
Q 041567 156 SKNRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPA---PYH--------- 223 (467)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v---~~~--------- 223 (467)
.+..++|||+..++++..+|..+.+..++|+|+||||+||||||+.+|+ ++..+|+..+|+.. +..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccc
Confidence 3456799999999999999876666799999999999999999999999 78889999888742 111
Q ss_pred --CC-HHHHH-HHHHHhhCCCCccccCCCCCHHHHHHHHHHhhCCceEEEEEecCCCcchHHHHHHhhcCCCCCcEEEEe
Q 041567 224 --YD-AYQIL-DIVTMFLLPFSMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWSTNVLDVVREILLDNQNGSRVLIT 299 (467)
Q Consensus 224 --~~-~~~~~-~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivT 299 (467)
++ ...+. .++..+..... ..... ...+++.|++||+||||||||+...|+.+.......++||+||||
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~----~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiT 330 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKD----IKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVI 330 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCC----cccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEE
Confidence 11 12344 55555543321 11111 245778899999999999999999999998766666789999999
Q ss_pred cCccccccc-cc------------------cccc----ccCCCChHHHHHHHHHHcCCChHHHHHHHhc-cCccc--chh
Q 041567 300 LTRIKMVTR-FQ------------------FENG----ESVRLDLVPTGGPLRVTYQGWPFLILYHGSI-SLEEN--IRE 353 (467)
Q Consensus 300 ~TR~~~v~~-~~------------------F~~~----~~~~~~~~~~~~~i~~~c~GlPLai~~i~~~-~~~~~--~~~ 353 (467)
||+..++. ++ |... ...++.+.+++++|+++|+|+||||+++|+. +.++. |..
T Consensus 331 -Trd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~ 409 (1153)
T PLN03210 331 -TKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMD 409 (1153)
T ss_pred -eCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHH
Confidence 99998876 42 3332 2234467899999999999999999999999 87765 443
Q ss_pred hccc--------hhhHHHHhhcCCch-hhHHHHhhhccCCCCCccChhHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCcc
Q 041567 354 VFET--------PLGLLIVICCKLPF-HLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKYLEQLINRGF 424 (467)
Q Consensus 354 ~l~~--------i~~~l~~sy~~L~~-~~k~cfl~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~e~~~~~~l~~Lv~~~l 424 (467)
.+.. +..+|++||+.|++ ..|.||+++|+||.+..++ .+..|++.+... ++..++.|+++||
T Consensus 410 ~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~------~~~~l~~L~~ksL 480 (1153)
T PLN03210 410 MLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD------VNIGLKNLVDKSL 480 (1153)
T ss_pred HHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC------chhChHHHHhcCC
Confidence 3322 88999999999987 4999999999999887553 577888877653 2334899999999
Q ss_pred ccccccCCCCccceEEeChhHHHHHHHhhccc
Q 041567 425 VDARKRRAGVTINTCSVPGRCHPVLLAVAFKA 456 (467)
Q Consensus 425 l~~~~~~~~~~~~~~~mHdlv~~~a~~~~~~e 456 (467)
|+... .++.|||++|++++.++.++
T Consensus 481 i~~~~-------~~~~MHdLl~~~~r~i~~~~ 505 (1153)
T PLN03210 481 IHVRE-------DIVEMHSLLQEMGKEIVRAQ 505 (1153)
T ss_pred EEEcC-------CeEEhhhHHHHHHHHHHHhh
Confidence 98743 35999999999999998765
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.44 E-value=1.5e-11 Score=138.09 Aligned_cols=272 Identities=13% Similarity=0.101 Sum_probs=168.1
Q ss_pred CCCCCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCC-CCHHHHH-HH
Q 041567 155 SSKNRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYH-YDAYQIL-DI 232 (467)
Q Consensus 155 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~-~i 232 (467)
|...+.++-|+.-.+.+ ... ...+++.|.|++|.||||++....+. ++.++|+++... -+...++ .+
T Consensus 10 p~~~~~~~~R~rl~~~l----~~~-~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 10 PVRLHNTVVRERLLAKL----SGA-NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred CCCccccCcchHHHHHH----hcc-cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHH
Confidence 34456677777555544 332 35789999999999999999998862 236899999744 4556666 77
Q ss_pred HHHhhCCCCc--cc------cCCCCCHHHHHHHHHHhhC--CceEEEEEecCCCc--ch-HHHHHHhhcCCCCCcEEEEe
Q 041567 233 VTMFLLPFSM--LS------KIKDKDYEMKKINLGEYLM--TKWYLIVLDDVWST--NV-LDVVREILLDNQNGSRVLIT 299 (467)
Q Consensus 233 l~~l~~~~~~--~~------~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~--~~-~~~l~~~l~~~~~gs~iivT 299 (467)
+..+....+. +. .....+.......+...+. +.+++|||||+... .. .+.+...++....+.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 7777532110 00 0111223334444444443 57899999999654 22 23444444445567788899
Q ss_pred cCccccccc---c---------c-----cccc--------ccCCCChHHHHHHHHHHcCCChHHHHHHHhc-cCccc-c-
Q 041567 300 LTRIKMVTR---F---------Q-----FENG--------ESVRLDLVPTGGPLRVTYQGWPFLILYHGSI-SLEEN-I- 351 (467)
Q Consensus 300 ~TR~~~v~~---~---------~-----F~~~--------~~~~~~~~~~~~~i~~~c~GlPLai~~i~~~-~~~~~-~- 351 (467)
||...-.. . + |... ....+-..+...+|.+.|+|.|+++..++.. +..+. .
T Consensus 159 -sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~ 237 (903)
T PRK04841 159 -SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQNNSSLH 237 (903)
T ss_pred -eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchh
Confidence 99842211 0 0 3322 1112334566788999999999999988865 43322 1
Q ss_pred --hhhc-----cchhhHHH-HhhcCCchhhHHHHhhhccCCCCCccChhHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCc
Q 041567 352 --REVF-----ETPLGLLI-VICCKLPFHLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKYLEQLINRG 423 (467)
Q Consensus 352 --~~~l-----~~i~~~l~-~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~e~~~~~~l~~Lv~~~ 423 (467)
...+ ..+...+. -.++.||++.+..++..|+++ . ++..-+-. +.. .+.+...+++|.+.+
T Consensus 238 ~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~--~~~~l~~~------l~~---~~~~~~~L~~l~~~~ 305 (903)
T PRK04841 238 DSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-S--MNDALIVR------VTG---EENGQMRLEELERQG 305 (903)
T ss_pred hhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-c--CCHHHHHH------HcC---CCcHHHHHHHHHHCC
Confidence 1112 11444333 348899999999999999997 2 33332211 111 234678899999999
Q ss_pred cccccccCCCCccceEEeChhHHHHHHHhh
Q 041567 424 FVDARKRRAGVTINTCSVPGRCHPVLLAVA 453 (467)
Q Consensus 424 ll~~~~~~~~~~~~~~~mHdlv~~~a~~~~ 453 (467)
++...... ....|+.|++++++++...
T Consensus 306 l~~~~~~~---~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 306 LFIQRMDD---SGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred CeeEeecC---CCCEEehhHHHHHHHHHHH
Confidence 97532211 1146899999999999865
No 5
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.31 E-value=4.5e-10 Score=114.11 Aligned_cols=282 Identities=17% Similarity=0.141 Sum_probs=160.8
Q ss_pred CCCCccccchhHHHHHHHHHhcC--CCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HH
Q 041567 156 SKNRNTVGLDDRMEELLDLLIEG--PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DI 232 (467)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~i 232 (467)
..+..++||++++++|...|... +.....+.|+|++|+|||++++.++++.......-..++++.....+...++ .|
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 45678999999999999998543 2334567899999999999999999843222222346777777777888899 99
Q ss_pred HHHhhCCCCccccCCCCCHHHHHHHHHHhhC--CceEEEEEecCCCc------chHHHHHHhhcCCCCCcE--EEEecCc
Q 041567 233 VTMFLLPFSMLSKIKDKDYEMKKINLGEYLM--TKWYLIVLDDVWST------NVLDVVREILLDNQNGSR--VLITLTR 302 (467)
Q Consensus 233 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~------~~~~~l~~~l~~~~~gs~--iivT~TR 302 (467)
+.++..... .....+.++....+.+.+. +++.+||||+++.. +.+..+...+.. ..+++ +|.+ +.
T Consensus 107 ~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i-~~ 181 (394)
T PRK00411 107 ARQLFGHPP---PSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGI-SS 181 (394)
T ss_pred HHHhcCCCC---CCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEE-EC
Confidence 999876221 1123456777778887775 45789999999753 223333332222 22333 4555 44
Q ss_pred cccccc-cc-------------ccc------------c--cc--CCCChHHHHHHHHHHc----CCChHHHHHHHhc---
Q 041567 303 IKMVTR-FQ-------------FEN------------G--ES--VRLDLVPTGGPLRVTY----QGWPFLILYHGSI--- 345 (467)
Q Consensus 303 ~~~v~~-~~-------------F~~------------~--~~--~~~~~~~~~~~i~~~c----~GlPLai~~i~~~--- 345 (467)
...+.. .. |.. . .. ...-..+..+.|++.+ |.++.|+.++-.+
T Consensus 182 ~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~ 261 (394)
T PRK00411 182 DLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLI 261 (394)
T ss_pred CcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 433222 11 111 0 00 0011223334444443 5567776655432
Q ss_pred ---cCccc-----chhhccch-hhHHHHhhcCCchhhHHHHhhhcc-CCC-CCccChhHHHHH--HHHc--CCCCCCHHH
Q 041567 346 ---SLEEN-----IREVFETP-LGLLIVICCKLPFHLKLCFLYLSV-FPA-HLEISTRQLYQL--WIAE--GFIPDNSEA 410 (467)
Q Consensus 346 ---~~~~~-----~~~~l~~i-~~~l~~sy~~L~~~~k~cfl~~s~-fp~-~~~i~~~~Li~~--W~ae--g~i~~~~e~ 410 (467)
+.... +...+..+ ...+.-.+..||.+.|..+..++- ... ...+....+... .+++ |.-+ ....
T Consensus 262 a~~~~~~~I~~~~v~~a~~~~~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~-~~~~ 340 (394)
T PRK00411 262 AEREGSRKVTEEDVRKAYEKSEIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEP-RTHT 340 (394)
T ss_pred HHHcCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCc-CcHH
Confidence 11111 11112222 234455688999998776665542 221 133555555432 2222 2211 2345
Q ss_pred HHHHHHHHHHhCcccccccc--CCCCccceEEeCh
Q 041567 411 TAEKYLEQLINRGFVDARKR--RAGVTINTCSVPG 443 (467)
Q Consensus 411 ~~~~~l~~Lv~~~ll~~~~~--~~~~~~~~~~mHd 443 (467)
....|++.|...|+|..... +..|+.+.++++.
T Consensus 341 ~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~~ 375 (394)
T PRK00411 341 RFYEYINKLDMLGIINTRYSGKGGRGRTRLISLSY 375 (394)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEecC
Confidence 56779999999999987542 2345666676653
No 6
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.14 E-value=4e-09 Score=110.82 Aligned_cols=276 Identities=18% Similarity=0.138 Sum_probs=180.2
Q ss_pred CCCCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCC-CHHHHH-HHH
Q 041567 156 SKNRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHY-DAYQIL-DIV 233 (467)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~-~il 233 (467)
..+.+.|-|.. |.+.|... ...+.+.|.-++|.|||||+..... +. ..=..+.|.+.+++- ++..++ -++
T Consensus 16 ~~~~~~v~R~r----L~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~--~~-~~~~~v~Wlslde~dndp~rF~~yLi 87 (894)
T COG2909 16 VRPDNYVVRPR----LLDRLRRA-NDYRLILISAPAGFGKTTLLAQWRE--LA-ADGAAVAWLSLDESDNDPARFLSYLI 87 (894)
T ss_pred CCcccccccHH----HHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHH--hc-CcccceeEeecCCccCCHHHHHHHHH
Confidence 34555666654 45555544 3589999999999999999999875 11 222458999997664 566677 888
Q ss_pred HHhhCCCCc--------cccCCCCCHHHHHHHHHHhhCC--ceEEEEEecCCC---cchHHHHHHhhcCCCCCcEEEEec
Q 041567 234 TMFLLPFSM--------LSKIKDKDYEMKKINLGEYLMT--KWYLIVLDDVWS---TNVLDVVREILLDNQNGSRVLITL 300 (467)
Q Consensus 234 ~~l~~~~~~--------~~~~~~~~~~~~~~~l~~~L~~--kr~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~iivT~ 300 (467)
..+..-.+. .+.....+...+...+..-+.. ++..|||||..- +.--+.+...+.....+-..|||
T Consensus 88 ~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~- 166 (894)
T COG2909 88 AALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVT- 166 (894)
T ss_pred HHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEE-
Confidence 887753221 0112233455566666665543 689999999853 33334444445556678899999
Q ss_pred Cccccccc---cc--------------cccc--------ccCCCChHHHHHHHHHHcCCChHHHHHHHhc-cCcccch--
Q 041567 301 TRIKMVTR---FQ--------------FENG--------ESVRLDLVPTGGPLRVTYQGWPFLILYHGSI-SLEENIR-- 352 (467)
Q Consensus 301 TR~~~v~~---~~--------------F~~~--------~~~~~~~~~~~~~i~~~c~GlPLai~~i~~~-~~~~~~~-- 352 (467)
||+..-.. +. |... ....+-.....+.+.+..+|.+-|+..++=. +.+.+-.
T Consensus 167 SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~ 246 (894)
T COG2909 167 SRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQS 246 (894)
T ss_pred eccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHH
Confidence 99975544 11 4433 2234555667889999999999999888877 6333311
Q ss_pred -hhccc-----hhhHHHHhhcCCchhhHHHHhhhccCCCCCccChhHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCcccc
Q 041567 353 -EVFET-----PLGLLIVICCKLPFHLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKYLEQLINRGFVD 426 (467)
Q Consensus 353 -~~l~~-----i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~e~~~~~~l~~Lv~~~ll~ 426 (467)
.-+.. ..-...--++.||+++|..++-||+++.-. +.|+..- +-++.+...+++|-+++|+-
T Consensus 247 ~~~LsG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f~----~eL~~~L--------tg~~ng~amLe~L~~~gLFl 314 (894)
T COG2909 247 LRGLSGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRFN----DELCNAL--------TGEENGQAMLEELERRGLFL 314 (894)
T ss_pred hhhccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhh----HHHHHHH--------hcCCcHHHHHHHHHhCCCce
Confidence 11111 122334457899999999999999997421 2333322 33566888999999999975
Q ss_pred ccccCCCCccceEEeChhHHHHHHHhhcc
Q 041567 427 ARKRRAGVTINTCSVPGRCHPVLLAVAFK 455 (467)
Q Consensus 427 ~~~~~~~~~~~~~~mHdlv~~~a~~~~~~ 455 (467)
..-.+ ....|+.|.++.+|.+..-..
T Consensus 315 ~~Ldd---~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 315 QRLDD---EGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred eeecC---CCceeehhHHHHHHHHhhhcc
Confidence 43211 226799999999999876544
No 7
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.11 E-value=1.6e-08 Score=101.67 Aligned_cols=118 Identities=19% Similarity=0.099 Sum_probs=83.6
Q ss_pred CCCCccccchhHHHHHHHHHhcC--CCCcEEEEEECCCCChHHHHHHHHhcCccccCcc------ceEEEEEcCCCCCHH
Q 041567 156 SKNRNTVGLDDRMEELLDLLIEG--PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYF------DHLAWIPAPYHYDAY 227 (467)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F------~~~~wv~v~~~~~~~ 227 (467)
..+..++||++++++|...|... +.....+.|+|++|+|||++++.++++ ..... -..+|++.....+..
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~in~~~~~~~~ 89 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYVNCQILDTLY 89 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEEECCCCCCHH
Confidence 34568999999999999998742 234567899999999999999999984 22111 145788887777788
Q ss_pred HHH-HHHHHhhC-CCCccccCCCCCHHHHHHHHHHhhC--CceEEEEEecCCCc
Q 041567 228 QIL-DIVTMFLL-PFSMLSKIKDKDYEMKKINLGEYLM--TKWYLIVLDDVWST 277 (467)
Q Consensus 228 ~~~-~il~~l~~-~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~ 277 (467)
.++ .|+.++.. ....+ ....+..+....+.+.+. +++++||||+++.-
T Consensus 90 ~~~~~i~~~l~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 90 QVLVELANQLRGSGEEVP--TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred HHHHHHHHHHhhcCCCCC--CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 888 99999852 11101 122345566666666663 56889999999754
No 8
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.86 E-value=2e-08 Score=98.34 Aligned_cols=250 Identities=16% Similarity=0.068 Sum_probs=136.1
Q ss_pred CccccchhHHHHHHHHHhcC---CCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHH
Q 041567 159 RNTVGLDDRMEELLDLLIEG---PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTM 235 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~ 235 (467)
.+|+|++..++.|..++... ......+.++|++|+|||+||+.+.+ .....| ..+..+.......+...+..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~--~~~~~~---~~~~~~~~~~~~~l~~~l~~ 78 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIAN--EMGVNL---KITSGPALEKPGDLAAILTN 78 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCCE---EEeccchhcCchhHHHHHHh
Confidence 46899999999999888642 23355688999999999999999998 333322 12222111122222244444
Q ss_pred hhCCCC-ccccCCCCCHHHHHHHHHHhhCCceEEEEEecCCCcchHHHHHHhhcCCCCCcEEEEecCccccccc-----c
Q 041567 236 FLLPFS-MLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWSTNVLDVVREILLDNQNGSRVLITLTRIKMVTR-----F 309 (467)
Q Consensus 236 l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivT~TR~~~v~~-----~ 309 (467)
+....- .-++.+..+ ....+.+...+.+.+..+|+++..+...+.. .+ .+.+-|..| |+...+.. +
T Consensus 79 ~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~---~~~~li~~t-~~~~~l~~~l~sR~ 150 (305)
T TIGR00635 79 LEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DL---PPFTLVGAT-TRAGMLTSPLRDRF 150 (305)
T ss_pred cccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cC---CCeEEEEec-CCccccCHHHHhhc
Confidence 432210 000111112 2234556667777777778877665544421 11 124556667 76543332 1
Q ss_pred c----cc------------cc--ccCCCChHHHHHHHHHHcCCChHHHHHHHhc-c------Ccccchhh-ccchhhHHH
Q 041567 310 Q----FE------------NG--ESVRLDLVPTGGPLRVTYQGWPFLILYHGSI-S------LEENIREV-FETPLGLLI 363 (467)
Q Consensus 310 ~----F~------------~~--~~~~~~~~~~~~~i~~~c~GlPLai~~i~~~-~------~~~~~~~~-l~~i~~~l~ 363 (467)
+ |. .. .....-..+....|++.|+|.|-.+..++.. . ....+..+ .......+.
T Consensus 151 ~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~l~ 230 (305)
T TIGR00635 151 GIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKALEMLM 230 (305)
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhC
Confidence 1 11 00 1112223456778999999999655333322 1 11111111 111333367
Q ss_pred HhhcCCchhhHHHHh-hhccCCCCCccChhHHHHHHHHcCCCCCCHHHHHHHHHH-HHHhCccccccc
Q 041567 364 VICCKLPFHLKLCFL-YLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKYLE-QLINRGFVDARK 429 (467)
Q Consensus 364 ~sy~~L~~~~k~cfl-~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~e~~~~~~l~-~Lv~~~ll~~~~ 429 (467)
.+|..|+++.+..+. .+..++.+ .+..+.+.... | .....++..++ .|++.+||....
T Consensus 231 ~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g----~~~~~~~~~~e~~Li~~~li~~~~ 290 (305)
T TIGR00635 231 IDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G----EDADTIEDVYEPYLLQIGFLQRTP 290 (305)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C----CCcchHHHhhhHHHHHcCCcccCC
Confidence 788899998777666 55667544 34444332221 1 23456788888 699999997543
No 9
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.84 E-value=4.7e-08 Score=96.72 Aligned_cols=252 Identities=16% Similarity=0.059 Sum_probs=136.2
Q ss_pred CCCCccccchhHHHHHHHHHhc---CCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-H
Q 041567 156 SKNRNTVGLDDRMEELLDLLIE---GPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-D 231 (467)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~ 231 (467)
..-.+|+|+++.++.+..++.. .+.....+.|+|++|+|||+||+.+.+ .....+ .++..+ ......-+ .
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~--~l~~~~---~~~~~~-~~~~~~~l~~ 95 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIAN--EMGVNI---RITSGP-ALEKPGDLAA 95 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHH--HhCCCe---EEEecc-cccChHHHHH
Confidence 3446799999999999888764 233466788999999999999999998 443322 122221 11112223 4
Q ss_pred HHHHhhCCCC-ccccCCCCCHHHHHHHHHHhhCCceEEEEEecCCCcchHHHHHHhhcCCCCCcEEEEecCccccccc-c
Q 041567 232 IVTMFLLPFS-MLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWSTNVLDVVREILLDNQNGSRVLITLTRIKMVTR-F 309 (467)
Q Consensus 232 il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivT~TR~~~v~~-~ 309 (467)
++..+....- ..++.+..+ ....+.+...+.+.+..+++|+..+...+. ..+ .+.+-|..| ++...+.. .
T Consensus 96 ~l~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~---~~l---~~~~li~at-~~~~~l~~~L 167 (328)
T PRK00080 96 ILTNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIR---LDL---PPFTLIGAT-TRAGLLTSPL 167 (328)
T ss_pred HHHhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCcccccee---ecC---CCceEEeec-CCcccCCHHH
Confidence 4444432110 000111111 122333455555566666666654433211 011 123455566 66544333 1
Q ss_pred c--c------------------ccc--ccCCCChHHHHHHHHHHcCCChHHHHHHHhc-c------Ccccchhh-ccchh
Q 041567 310 Q--F------------------ENG--ESVRLDLVPTGGPLRVTYQGWPFLILYHGSI-S------LEENIREV-FETPL 359 (467)
Q Consensus 310 ~--F------------------~~~--~~~~~~~~~~~~~i~~~c~GlPLai~~i~~~-~------~~~~~~~~-l~~i~ 359 (467)
. | ... .....-..+....|++.|+|.|-.+..+... . .+..+... .....
T Consensus 168 ~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l 247 (328)
T PRK00080 168 RDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDGVITKEIADKAL 247 (328)
T ss_pred HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 1 1 111 1112233456788999999999644333322 1 11111111 11244
Q ss_pred hHHHHhhcCCchhhHHHHh-hhccCCCCCccChhHHHHHHHHcCCCCCCHHHHHHHHHH-HHHhCccccccc
Q 041567 360 GLLIVICCKLPFHLKLCFL-YLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKYLE-QLINRGFVDARK 429 (467)
Q Consensus 360 ~~l~~sy~~L~~~~k~cfl-~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~e~~~~~~l~-~Lv~~~ll~~~~ 429 (467)
..+...|..|++..+..+. ....|+.+ .+..+.+.... | .....+++.++ .|++.+||+...
T Consensus 248 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g----~~~~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 248 DMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G----EERDTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred HHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C----CCcchHHHHhhHHHHHcCCcccCC
Confidence 5667788899888777775 67778765 45555543322 1 23456777778 999999997543
No 10
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.83 E-value=1.5e-07 Score=90.48 Aligned_cols=167 Identities=16% Similarity=0.147 Sum_probs=94.8
Q ss_pred HHHHHHHhcC-CCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHhhCCCCccccC
Q 041567 169 EELLDLLIEG-PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMFLLPFSMLSKI 246 (467)
Q Consensus 169 ~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l~~~~~~~~~~ 246 (467)
.++...|... ..+...+.|+|++|+|||||++.+++.... ..+ ...|+ +....+..+++ .|+..++.+..
T Consensus 29 ~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~----- 100 (269)
T TIGR03015 29 KRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE----- 100 (269)
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC-----
Confidence 4444444321 223568899999999999999999985321 111 22343 23345777888 88888765432
Q ss_pred CCCCHHHHHHHHHHh-----hCCceEEEEEecCCCc--chHHHHHHhhc---CCCCCcEEEEecCccccc----------
Q 041567 247 KDKDYEMKKINLGEY-----LMTKWYLIVLDDVWST--NVLDVVREILL---DNQNGSRVLITLTRIKMV---------- 306 (467)
Q Consensus 247 ~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~~--~~~~~l~~~l~---~~~~gs~iivT~TR~~~v---------- 306 (467)
..+.......+... ..+++++||+||++.. ..++.+..... .......|++| ......
T Consensus 101 -~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~-g~~~~~~~l~~~~~~~ 178 (269)
T TIGR03015 101 -GRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLV-GQPEFRETLQSPQLQQ 178 (269)
T ss_pred -CCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEc-CCHHHHHHHcCchhHH
Confidence 12223333333332 2678899999999875 35565553322 11222345666 432110
Q ss_pred -cc-----cc---cc--------c-c----c-c-CCCChHHHHHHHHHHcCCChHHHHHHHhc
Q 041567 307 -TR-----FQ---FE--------N-G----E-S-VRLDLVPTGGPLRVTYQGWPFLILYHGSI 345 (467)
Q Consensus 307 -~~-----~~---F~--------~-~----~-~-~~~~~~~~~~~i~~~c~GlPLai~~i~~~ 345 (467)
.. +. |. . . . . ...-..+..+.|++.|+|.|..|..++..
T Consensus 179 l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~ 241 (269)
T TIGR03015 179 LRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDR 241 (269)
T ss_pred HHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHH
Confidence 00 00 11 0 0 1 1 12234578889999999999998877754
No 11
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.72 E-value=6e-08 Score=90.63 Aligned_cols=60 Identities=23% Similarity=0.262 Sum_probs=42.2
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCC
Q 041567 161 TVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHY 224 (467)
Q Consensus 161 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~ 224 (467)
|+||++++++|.+++..+. ...+.|+|+.|+|||+|++.+.+ ..+..-...+|+......
T Consensus 1 F~gR~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~--~~~~~~~~~~y~~~~~~~ 60 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFIN--ELKEKGYKVVYIDFLEES 60 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHH--HCT--EECCCHHCCTTBS
T ss_pred CCCHHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHH--HhhhcCCcEEEEecccch
Confidence 7999999999999997653 57889999999999999999998 443222234455444443
No 12
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.60 E-value=6.5e-07 Score=76.71 Aligned_cols=121 Identities=14% Similarity=0.110 Sum_probs=71.0
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHhhCCC
Q 041567 162 VGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMFLLPF 240 (467)
Q Consensus 162 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l~~~~ 240 (467)
+|++..++.+...+... ....+.|+|.+|+|||++++.+++. ....-..++++...+........ .+...
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----- 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEGLVVAELFGHF----- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhhhhHHHHHhhhh-----
Confidence 47888889998888664 3568889999999999999999984 32222345666655433221111 11000
Q ss_pred CccccCCCCCHHHHHHHHHHhhCCceEEEEEecCCCc--chHHHHHHhhcCC------CCCcEEEEecCccc
Q 041567 241 SMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWST--NVLDVVREILLDN------QNGSRVLITLTRIK 304 (467)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~------~~gs~iivT~TR~~ 304 (467)
............++.+|++||++.. .....+...+... ..+..+|+| |...
T Consensus 72 ------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~-~~~~ 130 (151)
T cd00009 72 ------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGA-TNRP 130 (151)
T ss_pred ------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEe-cCcc
Confidence 0011112223456789999999853 2223333333322 357788888 6543
No 13
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.57 E-value=1.4e-07 Score=84.89 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=32.0
Q ss_pred ccccchhHHHHHHHHHhc-CCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 160 NTVGLDDRMEELLDLLIE-GPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 160 ~~vGr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.|+||+++++++...|.. .....+.+.|+|.+|+|||+|.+.++..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 489999999999999942 2345789999999999999999999884
No 14
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.57 E-value=1.6e-07 Score=79.64 Aligned_cols=110 Identities=15% Similarity=0.263 Sum_probs=75.7
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCc-----cceEEEEEcCCCCCHHHHH-HHHHHhhCCCCccccCCCCCHHHH
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHY-----FDHLAWIPAPYHYDAYQIL-DIVTMFLLPFSMLSKIKDKDYEMK 254 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-----F~~~~wv~v~~~~~~~~~~-~il~~l~~~~~~~~~~~~~~~~~~ 254 (467)
+.+.+.|+|.+|+|||++++.+.++ .... -..++|+.+....+...+. .|+.+++.... ...+..++
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~l 75 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK-----SRQTSDEL 75 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS-----STS-HHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc-----ccCCHHHH
Confidence 3578999999999999999999984 3221 3456799998888999999 99999998654 23466777
Q ss_pred HHHHHHhhCCc-eEEEEEecCCCc---chHHHHHHhhcCCCCCcEEEEe
Q 041567 255 KINLGEYLMTK-WYLIVLDDVWST---NVLDVVREILLDNQNGSRVLIT 299 (467)
Q Consensus 255 ~~~l~~~L~~k-r~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iivT 299 (467)
...+.+.+... ..+||+|++..- +.++.+.... + ..+.++|+.
T Consensus 76 ~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~-~-~~~~~vvl~ 122 (131)
T PF13401_consen 76 RSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLL-N-ESNIKVVLV 122 (131)
T ss_dssp HHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHT-C-SCBEEEEEE
T ss_pred HHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHH-h-CCCCeEEEE
Confidence 78888888664 459999999543 2334443322 3 557777777
No 15
>PF05729 NACHT: NACHT domain
Probab=98.56 E-value=3.4e-07 Score=80.75 Aligned_cols=113 Identities=17% Similarity=0.120 Sum_probs=66.2
Q ss_pred EEEEEECCCCChHHHHHHHHhcCccccCc----cceEEEEEcCCCCCHH---HHH-HHHHHhhCCCCccccCCCCCHHHH
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNSSYVKHY----FDHLAWIPAPYHYDAY---QIL-DIVTMFLLPFSMLSKIKDKDYEMK 254 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~v~~~~~~~---~~~-~il~~l~~~~~~~~~~~~~~~~~~ 254 (467)
+++.|+|.+|+||||+++.++..-..... +...+|++........ .+. .|..+...... ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--------~~~~- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA--------PIEE- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh--------hhHH-
Confidence 47899999999999999999874222222 4566777765544322 233 33333332111 1111
Q ss_pred HHHHHHh-hCCceEEEEEecCCCcch---------HHHHH-HhhcC-CCCCcEEEEecCcccccc
Q 041567 255 KINLGEY-LMTKWYLIVLDDVWSTNV---------LDVVR-EILLD-NQNGSRVLITLTRIKMVT 307 (467)
Q Consensus 255 ~~~l~~~-L~~kr~LlVlDdv~~~~~---------~~~l~-~~l~~-~~~gs~iivT~TR~~~v~ 307 (467)
.+... -..++++||+|++..... +..+. ..++. ..++.++||| +|.....
T Consensus 72 --~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit-~r~~~~~ 133 (166)
T PF05729_consen 72 --LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIIT-SRPRAFP 133 (166)
T ss_pred --HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEE-EcCChHH
Confidence 22222 246899999999965421 22222 33332 3568999999 9877653
No 16
>PTZ00202 tuzin; Provisional
Probab=98.52 E-value=1.2e-05 Score=79.99 Aligned_cols=131 Identities=16% Similarity=0.100 Sum_probs=84.2
Q ss_pred CCCCCCCccccchhHHHHHHHHHhcCC-CCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-
Q 041567 153 SSSSKNRNTVGLDDRMEELLDLLIEGP-NQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL- 230 (467)
Q Consensus 153 ~~~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~- 230 (467)
+.|.+.+.|+||+.+..+|...|...+ ...+++.|.|++|+|||||++.+..... +. .++++.. +..+++
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~-qL~vNpr---g~eElLr 327 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MP-AVFVDVR---GTEDTLR 327 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ce-EEEECCC---CHHHHHH
Confidence 446778899999999999999997543 2356999999999999999999997322 22 3333333 678999
Q ss_pred HHHHHhhCCCCccccCCCCCHHHHHHHHHHhh-----C-CceEEEEEecCCCcchHHHHH---HhhcCCCCCcEEEEe
Q 041567 231 DIVTMFLLPFSMLSKIKDKDYEMKKINLGEYL-----M-TKWYLIVLDDVWSTNVLDVVR---EILLDNQNGSRVLIT 299 (467)
Q Consensus 231 ~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L-----~-~kr~LlVlDdv~~~~~~~~l~---~~l~~~~~gs~iivT 299 (467)
.++.+|+.+.. ....++...|.+.| . +++.+||+- +.+.+.+..+- -.|.+...-|.|++-
T Consensus 328 ~LL~ALGV~p~-------~~k~dLLrqIqeaLl~~~~e~GrtPVLII~-lreg~~l~rvyne~v~la~drr~ch~v~e 397 (550)
T PTZ00202 328 SVVKALGVPNV-------EACGDLLDFISEACRRAKKMNGETPLLVLK-LREGSSLQRVYNEVVALACDRRLCHVVIE 397 (550)
T ss_pred HHHHHcCCCCc-------ccHHHHHHHHHHHHHHHHHhCCCCEEEEEE-ecCCCcHHHHHHHHHHHHccchhheeeee
Confidence 99999997321 12234444444433 2 566666653 22333333221 123344455777765
No 17
>PF13173 AAA_14: AAA domain
Probab=98.49 E-value=3e-07 Score=77.89 Aligned_cols=100 Identities=13% Similarity=0.117 Sum_probs=68.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCccccCCCCCHHHHHHHHHHh
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLSKIKDKDYEMKKINLGEY 261 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (467)
.+++.|.|+.|+|||||+++++++.. ....+++++......... ...+ ..+.+.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~--------------------~~~~-~~~~~~~~ 57 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRL--------------------ADPD-LLEYFLEL 57 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHH--------------------hhhh-hHHHHHHh
Confidence 36899999999999999999997422 334566776554311000 0001 33444444
Q ss_pred hCCceEEEEEecCCCcchHHHHHHhhcCCCCCcEEEEecCccccc
Q 041567 262 LMTKWYLIVLDDVWSTNVLDVVREILLDNQNGSRVLITLTRIKMV 306 (467)
Q Consensus 262 L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivT~TR~~~v 306 (467)
...++.+|+||++.....|......+.+..+..+|++| +.+...
T Consensus 58 ~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~t-gS~~~~ 101 (128)
T PF13173_consen 58 IKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILT-GSSSSL 101 (128)
T ss_pred hccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEE-ccchHH
Confidence 44578899999999888898888888776677899999 655443
No 18
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.47 E-value=2.1e-07 Score=91.07 Aligned_cols=256 Identities=16% Similarity=0.072 Sum_probs=168.2
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEE-EEcCCCCCHHHHH-HHHHHhhCCCCccccCCCCCHHHHHHHH
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAW-IPAPYHYDAYQIL-DIVTMFLLPFSMLSKIKDKDYEMKKINL 258 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~w-v~v~~~~~~~~~~-~il~~l~~~~~~~~~~~~~~~~~~~~~l 258 (467)
..+.+.++|.|||||||++-.+.. +...|+.-.| +....-.+...+. .+...++.... +-+.....+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~--------~g~~~~~~~ 81 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ--------PGDSAVDTL 81 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc--------cchHHHHHH
Confidence 368899999999999999998887 5667866554 4444444555555 55555665432 223345567
Q ss_pred HHhhCCceEEEEEecCCCc-chHHHHHHhhcCCCCCcEEEEecCccccccc--cc---------------cccc------
Q 041567 259 GEYLMTKWYLIVLDDVWST-NVLDVVREILLDNQNGSRVLITLTRIKMVTR--FQ---------------FENG------ 314 (467)
Q Consensus 259 ~~~L~~kr~LlVlDdv~~~-~~~~~l~~~l~~~~~gs~iivT~TR~~~v~~--~~---------------F~~~------ 314 (467)
.....++|.++|+||.... +.-..+...+..+...-.|+.| +|...... .. |...
T Consensus 82 ~~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~at-sre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 82 VRRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILAT-SREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred HHHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHH-hHhhhcccccccccCCccccCCchhHHHHHHHHHhcc
Confidence 7777889999999998433 2222333444455556678888 87765443 11 1111
Q ss_pred -ccCCCChHHHHHHHHHHcCCChHHHHHHHhc-cCccc--chhhccc------------------hhhHHHHhhcCCchh
Q 041567 315 -ESVRLDLVPTGGPLRVTYQGWPFLILYHGSI-SLEEN--IREVFET------------------PLGLLIVICCKLPFH 372 (467)
Q Consensus 315 -~~~~~~~~~~~~~i~~~c~GlPLai~~i~~~-~~~~~--~~~~l~~------------------i~~~l~~sy~~L~~~ 372 (467)
............+|+++..|.||+|...++. +.-.. +.+.|.+ ....+.+||.-|...
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhH
Confidence 1123344667889999999999999998887 54333 2222221 789999999999999
Q ss_pred hHHHHhhhccCCCCCccChhHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCccccccccCCCCccceEEeChhHHHHHHHh
Q 041567 373 LKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKYLEQLINRGFVDARKRRAGVTINTCSVPGRCHPVLLAV 452 (467)
Q Consensus 373 ~k~cfl~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~e~~~~~~l~~Lv~~~ll~~~~~~~~~~~~~~~mHdlv~~~a~~~ 452 (467)
.+-.|.-++.|...+... ...|.+-|-......-....-+..|++.+++...... ....|+.-+-+|.|+..+
T Consensus 241 e~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~---~~a~~Rl~eT~r~Yalae 313 (414)
T COG3903 241 ERALFGRLAVFVGGFDLG----LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLL---GRARYRLLETGRRYALAE 313 (414)
T ss_pred HHHHhcchhhhhhhhccc----HHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhh---hHHHHHHHHHHHHHHHHH
Confidence 999999999998877654 3445555544211233355567788899988765421 114577777788887766
Q ss_pred hcc
Q 041567 453 AFK 455 (467)
Q Consensus 453 ~~~ 455 (467)
-.+
T Consensus 314 L~r 316 (414)
T COG3903 314 LHR 316 (414)
T ss_pred HHh
Confidence 443
No 19
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.39 E-value=5.1e-07 Score=85.07 Aligned_cols=93 Identities=11% Similarity=-0.089 Sum_probs=60.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCC--CCHHHHH-HHHHHhhCCCC-ccccCCCCCHHHHHHH
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYH--YDAYQIL-DIVTMFLLPFS-MLSKIKDKDYEMKKIN 257 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~~~-~il~~l~~~~~-~~~~~~~~~~~~~~~~ 257 (467)
...++|+|++|+|||||++.++++.... +|+..+|+.+.++ +++.+++ .+...+-.... .+..............
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 5688999999999999999999964444 8999999997777 7888888 87333322111 0000000001111222
Q ss_pred HHHh-hCCceEEEEEecCC
Q 041567 258 LGEY-LMTKWYLIVLDDVW 275 (467)
Q Consensus 258 l~~~-L~~kr~LlVlDdv~ 275 (467)
...+ -.+++.+|++|++.
T Consensus 95 a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 95 AKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHCCCCEEEEEECHH
Confidence 2222 25799999999994
No 20
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.29 E-value=3.1e-05 Score=85.59 Aligned_cols=281 Identities=13% Similarity=0.083 Sum_probs=152.0
Q ss_pred ccccchhHHHHHHHHHhcC-CCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEE---EEEcCCCCC---HHHHH-H
Q 041567 160 NTVGLDDRMEELLDLLIEG-PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLA---WIPAPYHYD---AYQIL-D 231 (467)
Q Consensus 160 ~~vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~---wv~v~~~~~---~~~~~-~ 231 (467)
.++||+.+++.|...+..- .....++.+.|..|||||+|+++|.. .+.+.+...+ +-....... ..+.+ +
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 3789999999999988653 33467999999999999999999988 4443322211 111112111 11222 3
Q ss_pred HHHHh-------------------hCCCC---------------ccc--cCCCCCHHHH-----HHHHHHhhC-CceEEE
Q 041567 232 IVTMF-------------------LLPFS---------------MLS--KIKDKDYEMK-----KINLGEYLM-TKWYLI 269 (467)
Q Consensus 232 il~~l-------------------~~~~~---------------~~~--~~~~~~~~~~-----~~~l~~~L~-~kr~Ll 269 (467)
++.++ +.... .++ .......... ...+..+.. .++.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 33333 21110 000 0111111111 222333333 469999
Q ss_pred EEecC-CCc-chHHHHHHhhcCCCC----CcEEEEecCccccccc---cc-----------cc--cc--------ccCCC
Q 041567 270 VLDDV-WST-NVLDVVREILLDNQN----GSRVLITLTRIKMVTR---FQ-----------FE--NG--------ESVRL 319 (467)
Q Consensus 270 VlDdv-~~~-~~~~~l~~~l~~~~~----gs~iivT~TR~~~v~~---~~-----------F~--~~--------~~~~~ 319 (467)
|+||+ |-+ ..++-+......... -..|..+ ........ .+ +. +. ....+
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~-h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~ 237 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLL-HPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL 237 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccC-CCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc
Confidence 99999 433 233322222211110 0112222 11111100 00 11 11 22255
Q ss_pred ChHHHHHHHHHHcCCChHHHHHHHhc-cCcc-------c--chhhccc---------hhhHHHHhhcCCchhhHHHHhhh
Q 041567 320 DLVPTGGPLRVTYQGWPFLILYHGSI-SLEE-------N--IREVFET---------PLGLLIVICCKLPFHLKLCFLYL 380 (467)
Q Consensus 320 ~~~~~~~~i~~~c~GlPLai~~i~~~-~~~~-------~--~~~~l~~---------i~~~l~~sy~~L~~~~k~cfl~~ 380 (467)
...+....|+++..|.|+-+.-+-.. .... . |...+.. +...+..-.+.||...+..+...
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~A 317 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKAA 317 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 66788999999999999988666555 3321 1 2222111 34458888999999999999999
Q ss_pred ccCCCCCccChhHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCccccccccCCCC---ccc-eEEeChhHHHHHHH
Q 041567 381 SVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKYLEQLINRGFVDARKRRAGV---TIN-TCSVPGRCHPVLLA 451 (467)
Q Consensus 381 s~fp~~~~i~~~~Li~~W~aeg~i~~~~e~~~~~~l~~Lv~~~ll~~~~~~~~~---~~~-~~~mHdlv~~~a~~ 451 (467)
|++-.. |+.+.|...|-. ....++...++.|....++-..+....+ ... +--.||.+++.|-+
T Consensus 318 A~iG~~--F~l~~La~l~~~------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~ 384 (849)
T COG3899 318 ACIGNR--FDLDTLAALAED------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYN 384 (849)
T ss_pred HHhCcc--CCHHHHHHHHhh------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhc
Confidence 998644 456666666553 3466777788887776666433211111 111 11468888888754
No 21
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.29 E-value=8.5e-07 Score=87.40 Aligned_cols=99 Identities=12% Similarity=-0.017 Sum_probs=62.6
Q ss_pred HHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCC--CHHHHH-HHHHHhhCCCCccccC
Q 041567 170 ELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHY--DAYQIL-DIVTMFLLPFSMLSKI 246 (467)
Q Consensus 170 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~--~~~~~~-~il~~l~~~~~~~~~~ 246 (467)
++++++..-. .-...+|+|++|+||||||+.+|++.... +|+.++||.+.++. .+.+++ .++..+-....
T Consensus 158 rvID~l~PIG-kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~----- 230 (416)
T PRK09376 158 RIIDLIAPIG-KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTF----- 230 (416)
T ss_pred eeeeeecccc-cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECC-----
Confidence 3445444332 34677899999999999999999964444 89999999999887 666666 66522211110
Q ss_pred CCCCHH------HHHHHHHHh-hCCceEEEEEecCC
Q 041567 247 KDKDYE------MKKINLGEY-LMTKWYLIVLDDVW 275 (467)
Q Consensus 247 ~~~~~~------~~~~~l~~~-L~~kr~LlVlDdv~ 275 (467)
+..... ...+.-..+ -.++++||++|++.
T Consensus 231 d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 231 DEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 111111 111111111 36799999999994
No 22
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.26 E-value=2.5e-05 Score=83.63 Aligned_cols=268 Identities=12% Similarity=0.056 Sum_probs=143.1
Q ss_pred CCCCccccchhHHHHHHHHHhcC---CCCcEEEEEECCCCChHHHHHHHHhcCcc--c-cCccc--eEEEEEcCCCCCHH
Q 041567 156 SKNRNTVGLDDRMEELLDLLIEG---PNQLSVVAILNSIGLDKTAFTAEAYNSSY--V-KHYFD--HLAWIPAPYHYDAY 227 (467)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~--~-~~~F~--~~~wv~v~~~~~~~ 227 (467)
..|..+.|||+++++|...|... .....++-|+|.+|.|||++++.|.+... . +...+ .+++|+...-.+..
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~ 831 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPN 831 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHH
Confidence 34578999999999999988652 23346778999999999999999987321 0 11222 35678777777888
Q ss_pred HHH-HHHHHhhCCCCccccCCCCCHHHHHHHHHHhhCC---ceEEEEEecCCCcc--hHHHHHHhhc-CCCCCcEEEEec
Q 041567 228 QIL-DIVTMFLLPFSMLSKIKDKDYEMKKINLGEYLMT---KWYLIVLDDVWSTN--VLDVVREILL-DNQNGSRVLITL 300 (467)
Q Consensus 228 ~~~-~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~---kr~LlVlDdv~~~~--~~~~l~~~l~-~~~~gs~iivT~ 300 (467)
.++ .|..++....+ ....+..+....+...+.. ...+||||++..-. .-+.|...+. ....+++|+|.+
T Consensus 832 sIYqvI~qqL~g~~P----~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIG 907 (1164)
T PTZ00112 832 AAYQVLYKQLFNKKP----PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIA 907 (1164)
T ss_pred HHHHHHHHHHcCCCC----CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEE
Confidence 888 88888855332 1223334455555555422 34589999996431 1112222221 112355655421
Q ss_pred -Cccccccc-cc------cccc-----ccCCCChHHHHHHHHHHcCC--ChHHHHHHHhc-cC-ccc-------chhhc-
Q 041567 301 -TRIKMVTR-FQ------FENG-----ESVRLDLVPTGGPLRVTYQG--WPFLILYHGSI-SL-EEN-------IREVF- 355 (467)
Q Consensus 301 -TR~~~v~~-~~------F~~~-----~~~~~~~~~~~~~i~~~c~G--lPLai~~i~~~-~~-~~~-------~~~~l- 355 (467)
+....... +. |... +.....+.++.+.-++.+.| -|-||..+|.. +. ..+ +....
T Consensus 908 ISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 908 ISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred ecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 33222221 10 2211 12223334444444444433 35666666664 22 111 11100
Q ss_pred -------c--ch--------hhHHHHhhcCCchhhHHHHhhhcc-CC--CCCccChhHHHHH--HHHc------CCCCCC
Q 041567 356 -------E--TP--------LGLLIVICCKLPFHLKLCFLYLSV-FP--AHLEISTRQLYQL--WIAE------GFIPDN 407 (467)
Q Consensus 356 -------~--~i--------~~~l~~sy~~L~~~~k~cfl~~s~-fp--~~~~i~~~~Li~~--W~ae------g~i~~~ 407 (467)
. .+ ...+.-....||.|.|..+..+.. .- ....++...+... =+++ |..+ .
T Consensus 988 ikegskVT~eHVrkAleeiE~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~iGv~p-l 1066 (1164)
T PTZ00112 988 NKRGQKIVPRDITEATNQLFDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYIGMCS-N 1066 (1164)
T ss_pred hcCCCccCHHHHHHHHHHHHhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhcCCCC-c
Confidence 0 01 222344556799987765553332 21 1223554444322 2333 3222 3
Q ss_pred HHHHHHHHHHHHHhCccccccc
Q 041567 408 SEATAEKYLEQLINRGFVDARK 429 (467)
Q Consensus 408 ~e~~~~~~l~~Lv~~~ll~~~~ 429 (467)
.+ ....++.+|...|+|....
T Consensus 1067 Tq-RV~d~L~eL~~LGIIl~ep 1087 (1164)
T PTZ00112 1067 NE-LFKIMLDKLVKMGILLIRP 1087 (1164)
T ss_pred HH-HHHHHHHHHHhcCeEEecC
Confidence 33 7888999999999987654
No 23
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=7e-06 Score=81.78 Aligned_cols=114 Identities=17% Similarity=0.138 Sum_probs=87.8
Q ss_pred CCCCccccchhHHHHHHHHHhcC--CCCcEEEEEECCCCChHHHHHHHHhcCccccCccce--EEEEEcCCCCCHHHHH-
Q 041567 156 SKNRNTVGLDDRMEELLDLLIEG--PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDH--LAWIPAPYHYDAYQIL- 230 (467)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~--~~wv~v~~~~~~~~~~- 230 (467)
..|..+.+|+++++++...|..- +..+.-+.|+|.+|.|||+.++.+.+ ++...... .++|++-...+..+++
T Consensus 14 ~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~ 91 (366)
T COG1474 14 YIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLS 91 (366)
T ss_pred CCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHH
Confidence 34455999999999999988643 22333488999999999999999998 55544322 6899999999999999
Q ss_pred HHHHHhhCCCCccccCCCCCHHHHHHHHHHhhCC--ceEEEEEecCCC
Q 041567 231 DIVTMFLLPFSMLSKIKDKDYEMKKINLGEYLMT--KWYLIVLDDVWS 276 (467)
Q Consensus 231 ~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~--kr~LlVlDdv~~ 276 (467)
.|+++++... ....+..+....+.+.+.. +.+++|||++..
T Consensus 92 ~i~~~~~~~p-----~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~ 134 (366)
T COG1474 92 KILNKLGKVP-----LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDA 134 (366)
T ss_pred HHHHHcCCCC-----CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhh
Confidence 9999998322 1345667777788887754 789999999964
No 24
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=5.4e-05 Score=74.44 Aligned_cols=123 Identities=11% Similarity=0.151 Sum_probs=79.9
Q ss_pred CccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC----ccccCccceEEEEE-cCCCCCHHHHHHHH
Q 041567 159 RNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS----SYVKHYFDHLAWIP-APYHYDAYQILDIV 233 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~----~~~~~~F~~~~wv~-v~~~~~~~~~~~il 233 (467)
.+++|-+..++.+.+.+..+. -...+.++|+.|+||||+|+.+++. .....|+|...|.. -+.....+++.++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHH
Confidence 357898888999999887653 3467789999999999999988872 12234566655654 23333333333333
Q ss_pred HHhhCCCCccccCCCCCHHHHHHHHHHhhCCceEEEEEecC--CCcchHHHHHHhhcCCCCCcEEEEecCccc
Q 041567 234 TMFLLPFSMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDV--WSTNVLDVVREILLDNQNGSRVLITLTRIK 304 (467)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv--~~~~~~~~l~~~l~~~~~gs~iivT~TR~~ 304 (467)
..+.... ..+++-++|+|++ .+...++.+...+.....++.+|++ |.+.
T Consensus 83 ~~~~~~p---------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~-~~~~ 133 (313)
T PRK05564 83 EEVNKKP---------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILL-CENL 133 (313)
T ss_pred HHHhcCc---------------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEE-eCCh
Confidence 3322110 1133444555554 5667899999999988889999988 7654
No 25
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.11 E-value=0.0001 Score=70.45 Aligned_cols=112 Identities=12% Similarity=0.141 Sum_probs=78.3
Q ss_pred CCccccchh---HHHHHHHHHhcC-CCCcEEEEEECCCCChHHHHHHHHhcCccccCcc------ceEEEEEcCCCCCHH
Q 041567 158 NRNTVGLDD---RMEELLDLLIEG-PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYF------DHLAWIPAPYHYDAY 227 (467)
Q Consensus 158 ~~~~vGr~~---~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F------~~~~wv~v~~~~~~~ 227 (467)
.+..+|... .++.+.++|..+ ..+.+-+.|+|.+|+|||++++++.... -..+ -.++.|.....++..
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h--p~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLH--PPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHC--CCCCCCCCccccEEEEecCCCCChH
Confidence 445677443 344555555544 3456779999999999999999998631 1112 147788889999999
Q ss_pred HHH-HHHHHhhCCCCccccCCCCCHHHHHHHHHHhhCC-ceEEEEEecCCC
Q 041567 228 QIL-DIVTMFLLPFSMLSKIKDKDYEMKKINLGEYLMT-KWYLIVLDDVWS 276 (467)
Q Consensus 228 ~~~-~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~ 276 (467)
.+. .|+.+++.+.. ...+...+.......|+. +--+||+|.+.+
T Consensus 111 ~~Y~~IL~~lgaP~~-----~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 111 RFYSAILEALGAPYR-----PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred HHHHHHHHHhCcccC-----CCCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 999 99999998764 333445555555566654 556899999975
No 26
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.10 E-value=2.9e-05 Score=79.29 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=35.7
Q ss_pred CCccccchhHHHH---HHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 158 NRNTVGLDDRMEE---LLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 158 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|.+..+.. +.+++... ....+.++|++|+||||||+.+++
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~ 58 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAG 58 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHH
Confidence 3468888877655 77777554 356788899999999999999998
No 27
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.06 E-value=1.5e-05 Score=79.05 Aligned_cols=94 Identities=10% Similarity=-0.070 Sum_probs=60.7
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCC--CCHHHHH-HHHHHhhCCCC-ccccCCCCCH-HHHH
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYH--YDAYQIL-DIVTMFLLPFS-MLSKIKDKDY-EMKK 255 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~~~-~il~~l~~~~~-~~~~~~~~~~-~~~~ 255 (467)
.-..++|+|.+|.|||||++.+++.... .+|+..+||.+.++ .++.+++ .++..+-.... .+.. ..... ....
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~-~~~~va~~v~ 244 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAS-RHVQVAEMVI 244 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChH-HHHHHHHHHH
Confidence 3568899999999999999999995332 37999999999876 6888888 88554433221 0000 00000 1111
Q ss_pred HHHHHh-hCCceEEEEEecCCC
Q 041567 256 INLGEY-LMTKWYLIVLDDVWS 276 (467)
Q Consensus 256 ~~l~~~-L~~kr~LlVlDdv~~ 276 (467)
+....+ -.+++.+|++|++..
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhH
Confidence 112222 357999999999943
No 28
>PRK06893 DNA replication initiation factor; Validated
Probab=98.06 E-value=2.1e-05 Score=73.59 Aligned_cols=38 Identities=13% Similarity=0.041 Sum_probs=28.6
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAP 221 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~ 221 (467)
.+.+.++|.+|+|||+|++.+++ ........+.|+++.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSN--HYLLNQRTAIYIPLS 76 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEeeHH
Confidence 46789999999999999999998 343334455676653
No 29
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.00 E-value=4e-05 Score=76.05 Aligned_cols=45 Identities=20% Similarity=0.167 Sum_probs=38.2
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|++..++.+.+++..+. .+.+.++|++|+||||+|+.+.+
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999887653 45678999999999999999987
No 30
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.99 E-value=3e-05 Score=75.16 Aligned_cols=116 Identities=16% Similarity=0.153 Sum_probs=81.6
Q ss_pred CCCccccchhHHHHHHHHHhcCCCC-cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHH
Q 041567 157 KNRNTVGLDDRMEELLDLLIEGPNQ-LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVT 234 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~-~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~ 234 (467)
.++.+.+|+..+..+..++.+.+.. +..|-|+|..|.|||.+.+.+++.. .. ..+|+++-+.++...++ .|+.
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--NL---ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--CC---cceeeehHHhccHHHHHHHHHH
Confidence 4578899999999999998876543 4456999999999999999999853 22 35899999999999999 9999
Q ss_pred HhhCCCCccccCCC--CCHHHHHHHHHHh--hC--CceEEEEEecCCCc
Q 041567 235 MFLLPFSMLSKIKD--KDYEMKKINLGEY--LM--TKWYLIVLDDVWST 277 (467)
Q Consensus 235 ~l~~~~~~~~~~~~--~~~~~~~~~l~~~--L~--~kr~LlVlDdv~~~ 277 (467)
+............. .........+.++ .. ++.++||||++..-
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~l 127 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADAL 127 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhh
Confidence 99632221111111 1122223333331 11 46899999999653
No 31
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.96 E-value=0.00014 Score=77.81 Aligned_cols=143 Identities=16% Similarity=0.157 Sum_probs=86.6
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCcc---ceEEEEEcCCC---CCHHHHH-
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYF---DHLAWIPAPYH---YDAYQIL- 230 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~v~~~---~~~~~~~- 230 (467)
-++++|.+..+..+.+.+... ....+.|+|++|+||||||+.+++.......+ ...-|+.+... .+...+.
T Consensus 153 ~~~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 153 FSEIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred HHhceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 356899999999988887543 35679999999999999999998753333332 12335544321 1222221
Q ss_pred HH---------------HHHhhCCCC-------------ccccCCCCCHHHHHHHHHHhhCCceEEEEEecCCCc--chH
Q 041567 231 DI---------------VTMFLLPFS-------------MLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWST--NVL 280 (467)
Q Consensus 231 ~i---------------l~~l~~~~~-------------~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~ 280 (467)
.+ +...+.... ..++.+..+ ...+..+.+.+++++++++.|+.|.. ..|
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~ 309 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDPNVP 309 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccCCcccc
Confidence 11 111111000 001122233 34577888899999999998877754 568
Q ss_pred HHHHHhhcCCCCCcEEEE--ecCccc
Q 041567 281 DVVREILLDNQNGSRVLI--TLTRIK 304 (467)
Q Consensus 281 ~~l~~~l~~~~~gs~iiv--T~TR~~ 304 (467)
+.+...+....+...+++ | |++.
T Consensus 310 ~~ik~~~~~~~~~~~VLI~aT-t~~~ 334 (615)
T TIGR02903 310 KYIKKLFEEGAPADFVLIGAT-TRDP 334 (615)
T ss_pred hhhhhhcccCccceEEEEEec-cccc
Confidence 888777766665555665 5 6544
No 32
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.93 E-value=5.3e-05 Score=74.17 Aligned_cols=111 Identities=18% Similarity=0.205 Sum_probs=64.6
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhh
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFL 237 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~ 237 (467)
..+++|-+..+.+++ ..+ .+.-...||++|+||||||+.+.. .....|.. ++-..+
T Consensus 29 Q~HLlg~~~~lrr~v---~~~--~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~~-----~sAv~~------------ 84 (436)
T COG2256 29 QEHLLGEGKPLRRAV---EAG--HLHSMILWGPPGTGKTTLARLIAG--TTNAAFEA-----LSAVTS------------ 84 (436)
T ss_pred hHhhhCCCchHHHHH---hcC--CCceeEEECCCCCCHHHHHHHHHH--hhCCceEE-----eccccc------------
Confidence 344555544444433 333 466777999999999999999998 55555532 221111
Q ss_pred CCCCccccCCCCCHHHHHHHHHH-hhCCceEEEEEecCCCc--chHHHHHHhhcCCCCCcEEEE--ecCcccc
Q 041567 238 LPFSMLSKIKDKDYEMKKINLGE-YLMTKWYLIVLDDVWST--NVLDVVREILLDNQNGSRVLI--TLTRIKM 305 (467)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv--T~TR~~~ 305 (467)
...+..+..+.-++ ...+++.+|++|.|..- .+-+.+ ||.-.+|.-|+| | |-|..
T Consensus 85 ---------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGAT-TENPs 144 (436)
T COG2256 85 ---------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGAT-TENPS 144 (436)
T ss_pred ---------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEecc-CCCCC
Confidence 11122333333322 33589999999999643 344434 444566777776 4 55543
No 33
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=8.6e-05 Score=79.03 Aligned_cols=138 Identities=10% Similarity=0.106 Sum_probs=74.8
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHh
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMF 236 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l 236 (467)
-.+++|.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+.......++ +..+...... .|...-
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~~G~ 86 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREIDEGR 86 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHhcCC
Confidence 3568999999999999987653 244567999999999999998877321111110 0111111111 221100
Q ss_pred hCCCCccccCCCCCHHHHHHHHHHh----hCCceEEEEEecCCCc--chHHHHHHhhcCCCCCcEEEEecCccc
Q 041567 237 LLPFSMLSKIKDKDYEMKKINLGEY----LMTKWYLIVLDDVWST--NVLDVVREILLDNQNGSRVLITLTRIK 304 (467)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivT~TR~~ 304 (467)
....-..+.......+++.+.+... ..++.-++|||++..- ..++.++..+-......++|+| |++.
T Consensus 87 h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILa-Ttd~ 159 (830)
T PRK07003 87 FVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILA-TTDP 159 (830)
T ss_pred CceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEE-ECCh
Confidence 0000000000111222322222221 1245558889999754 4578888777665667777776 6553
No 34
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.92 E-value=3.9e-05 Score=71.55 Aligned_cols=54 Identities=11% Similarity=0.104 Sum_probs=37.0
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcC
Q 041567 164 LDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAP 221 (467)
Q Consensus 164 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~ 221 (467)
.+..++.+.+++... ....+.|+|.+|+|||+||+.+++. ........++++++
T Consensus 22 ~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 22 NAELLAALRQLAAGK--GDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLA 75 (226)
T ss_pred cHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHH
Confidence 445666777765432 3568889999999999999999983 33333345566543
No 35
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.92 E-value=8.5e-05 Score=67.90 Aligned_cols=55 Identities=18% Similarity=0.152 Sum_probs=37.9
Q ss_pred CCCCccccchhHHHHHHHHHhc---CCCCcEEEEEECCCCChHHHHHHHHhcCccccCcc
Q 041567 156 SKNRNTVGLDDRMEELLDLLIE---GPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYF 212 (467)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 212 (467)
..-.+|||-+.-++.+.-++.. .++.+..+.+||++|+||||||..+.+ +....|
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~ 78 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNF 78 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--E
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCe
Confidence 4456899999888887655542 244678899999999999999999999 566555
No 36
>PRK04195 replication factor C large subunit; Provisional
Probab=97.91 E-value=7.9e-05 Score=77.67 Aligned_cols=119 Identities=16% Similarity=0.156 Sum_probs=72.0
Q ss_pred CCCccccchhHHHHHHHHHhcC--CCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHH
Q 041567 157 KNRNTVGLDDRMEELLDLLIEG--PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVT 234 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~ 234 (467)
.-.+++|.++.++.+.+|+..- +...+.+.|+|++|+||||+|+.++++ .. |+ .+-++.+...+...+..++.
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e--l~--~~-~ielnasd~r~~~~i~~~i~ 86 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND--YG--WE-VIELNASDQRTADVIERVAG 86 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--cC--CC-EEEEcccccccHHHHHHHHH
Confidence 3456999999999999998642 223678999999999999999999994 32 33 23334444322222223333
Q ss_pred HhhCCCCccccCCCCCHHHHHHHHHHhhCCceEEEEEecCCCc------chHHHHHHhhcCCCCCcEEEEecCc
Q 041567 235 MFLLPFSMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWST------NVLDVVREILLDNQNGSRVLITLTR 302 (467)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~------~~~~~l~~~l~~~~~gs~iivT~TR 302 (467)
....... .+..++-+||+|++... ..+..+...+.. . +..||+| +.
T Consensus 87 ~~~~~~s-------------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~-~-~~~iIli-~n 138 (482)
T PRK04195 87 EAATSGS-------------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKK-A-KQPIILT-AN 138 (482)
T ss_pred HhhccCc-------------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHc-C-CCCEEEe-cc
Confidence 3222110 01136779999999753 235556555542 2 3446666 53
No 37
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.90 E-value=6.4e-05 Score=75.88 Aligned_cols=108 Identities=9% Similarity=0.019 Sum_probs=72.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHh
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMF 236 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l 236 (467)
..++++.++..+.+...|... +.|.++|++|+|||++|+.+++.......|+.+.||.+++.++..++. .+.-.
T Consensus 174 l~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~- 248 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN- 248 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-
Confidence 356888999999999998854 467789999999999999999854344577888999999988766655 33110
Q ss_pred hCCCCccccCCCCCHHHHHHHHHHhhC--CceEEEEEecCCCc
Q 041567 237 LLPFSMLSKIKDKDYEMKKINLGEYLM--TKWYLIVLDDVWST 277 (467)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~ 277 (467)
.. .... ...-..+.+..... +++++||+|++...
T Consensus 249 ~v------gy~~-~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 249 GV------GFRR-KDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred CC------CeEe-cCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 00 0000 00111222222222 36899999999654
No 38
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00014 Score=76.38 Aligned_cols=46 Identities=15% Similarity=0.119 Sum_probs=38.5
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.++||-+..++.|.+.+..+. -...+.++|..|+||||+|+.+.+
T Consensus 15 FddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAk 60 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAK 60 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999987653 345678999999999999999877
No 39
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00031 Score=70.49 Aligned_cols=136 Identities=12% Similarity=0.122 Sum_probs=73.4
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHh
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMF 236 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l 236 (467)
-.+++|-+..++.+.+.+..+. -...+.++|+.|+||||+|+.+.+.-.....+. ..++...... .+....
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~~~~ 86 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIEKGL 86 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhcCC
Confidence 3568999999999999887653 345678999999999999999987321111000 0011111111 111111
Q ss_pred hCCCCccccCCCCCHHHHHHHHHHhh-----CCceEEEEEecCCCc--chHHHHHHhhcCCCCCcEEEEecCcc
Q 041567 237 LLPFSMLSKIKDKDYEMKKINLGEYL-----MTKWYLIVLDDVWST--NVLDVVREILLDNQNGSRVLITLTRI 303 (467)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivT~TR~ 303 (467)
.......+.......++. ..+.+.+ .+++-++|+|++..- ..++.+...+.......++|++ |.+
T Consensus 87 ~~d~~~~~~~~~~~v~~i-r~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~-t~~ 158 (363)
T PRK14961 87 CLDLIEIDAASRTKVEEM-REILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILA-TTD 158 (363)
T ss_pred CCceEEecccccCCHHHH-HHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEE-cCC
Confidence 100000000000112222 1222221 235569999999755 3577777777766667777776 543
No 40
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.83 E-value=0.00015 Score=61.29 Aligned_cols=90 Identities=12% Similarity=-0.033 Sum_probs=49.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCccccCCCCCHHHHHHHHHHh
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLSKIKDKDYEMKKINLGEY 261 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (467)
...+.|+|.+|+||||+++.+... .......+++++.+................. .............+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 73 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLLLIIVGG------KKASGSGELRLRLALAL 73 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHHhhhhhc------cCCCCCHHHHHHHHHHH
Confidence 357899999999999999999983 3333334556655543322222210000011 01122223334444444
Q ss_pred hCCc-eEEEEEecCCCcch
Q 041567 262 LMTK-WYLIVLDDVWSTNV 279 (467)
Q Consensus 262 L~~k-r~LlVlDdv~~~~~ 279 (467)
.... ..+|++|++.....
T Consensus 74 ~~~~~~~viiiDei~~~~~ 92 (148)
T smart00382 74 ARKLKPDVLILDEITSLLD 92 (148)
T ss_pred HHhcCCCEEEEECCcccCC
Confidence 4443 49999999987643
No 41
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.80 E-value=0.00017 Score=70.97 Aligned_cols=120 Identities=14% Similarity=0.108 Sum_probs=71.4
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHh
Q 041567 157 KNRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMF 236 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l 236 (467)
.-.+++|.+...+.+..++..+. ...++.++|++|+||||+|+.+++. .... ...++.+. .....+...+..+
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~~~~i~~~l~~~ 91 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CRIDFVRNRLTRF 91 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-ccHHHHHHHHHHH
Confidence 34678999999999999987643 4567778999999999999999883 3222 23344433 1111111111111
Q ss_pred hCCCCccccCCCCCHHHHHHHHHHhhCCceEEEEEecCCCc---chHHHHHHhhcCCCCCcEEEEecCccc
Q 041567 237 LLPFSMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWST---NVLDVVREILLDNQNGSRVLITLTRIK 304 (467)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iivT~TR~~ 304 (467)
.... -+.+.+-+||+|++... +..+.+...+.....++.+|+| |...
T Consensus 92 ~~~~--------------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt-~n~~ 141 (316)
T PHA02544 92 ASTV--------------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIIT-ANNK 141 (316)
T ss_pred HHhh--------------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEE-cCCh
Confidence 1100 01134557899999644 2233444444444567788888 7543
No 42
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.0003 Score=74.16 Aligned_cols=137 Identities=11% Similarity=0.097 Sum_probs=74.6
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHh
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMF 236 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l 236 (467)
-.+++|.+...+.|.+++..+. -...+.++|+.|+||||+|+.+.+. +... -|+.. ..++..... .+...-
T Consensus 14 FddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~--LnC~----~~~~~-~pCg~C~sC~~I~~g~ 85 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKC--LNCE----TGVTS-TPCEVCATCKAVNEGR 85 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH--hCCC----cCCCC-CCCccCHHHHHHhcCC
Confidence 3568999999999999998653 3467789999999999999999873 2110 01110 111111111 111100
Q ss_pred hCCCCccccCCCCCHHHHHHHHHHh----hCCceEEEEEecCCCc--chHHHHHHhhcCCCCCcEEEEecCcc
Q 041567 237 LLPFSMLSKIKDKDYEMKKINLGEY----LMTKWYLIVLDDVWST--NVLDVVREILLDNQNGSRVLITLTRI 303 (467)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivT~TR~ 303 (467)
....-..+.......+++.+.+... ..++.-++|+|++..- ...+.+...+-....+.++|++ |.+
T Consensus 86 hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILa-Ttd 157 (702)
T PRK14960 86 FIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFA-TTD 157 (702)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEE-ECC
Confidence 0000000000111222222222111 2356668999999754 5667777777665566777776 654
No 43
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.79 E-value=0.00022 Score=70.21 Aligned_cols=120 Identities=13% Similarity=0.133 Sum_probs=69.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEc--CCCCCHHHHHHHHHHh
Q 041567 159 RNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPA--PYHYDAYQILDIVTMF 236 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v--~~~~~~~~~~~il~~l 236 (467)
.+++|+++.++.+..++..+. .+.+.++|.+|+||||+|+.+.+.. ....+.. .++.+ +.......+...+..+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~~-~~i~~~~~~~~~~~~~~~~i~~~ 92 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALAREL-YGEDWRE-NFLELNASDERGIDVIRNKIKEF 92 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHH-cCCcccc-ceEEeccccccchHHHHHHHHHH
Confidence 568999999999999987643 4457999999999999999998731 1111211 12222 2221111111222221
Q ss_pred hCCCCccccCCCCCHHHHHHHHHHhhCCceEEEEEecCCCc--chHHHHHHhhcCCCCCcEEEEecCc
Q 041567 237 LLPFSMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWST--NVLDVVREILLDNQNGSRVLITLTR 302 (467)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivT~TR 302 (467)
....+ .....+-++++|++..- +....+...+......+.+|++ +.
T Consensus 93 ~~~~~-------------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~-~~ 140 (319)
T PRK00440 93 ARTAP-------------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILS-CN 140 (319)
T ss_pred HhcCC-------------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEE-eC
Confidence 11100 00123568999998643 3455666666555556777777 54
No 44
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00022 Score=74.61 Aligned_cols=46 Identities=13% Similarity=0.108 Sum_probs=38.3
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|-+..++.|...+..+. -...+.++|+.|+||||+|+.+++
T Consensus 15 f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk 60 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAK 60 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999887653 345678999999999999999987
No 45
>PLN03025 replication factor C subunit; Provisional
Probab=97.76 E-value=0.00022 Score=70.27 Aligned_cols=123 Identities=14% Similarity=0.137 Sum_probs=68.7
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccc-cCccc-eEEEEEcCCCCCHHHHHHHHHH
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYV-KHYFD-HLAWIPAPYHYDAYQILDIVTM 235 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~-~~~wv~v~~~~~~~~~~~il~~ 235 (467)
-.+++|.++.++.|.+++..+. .+.+.++|++|+||||+|..+.+ .. ...|. ..+-++.+...+...+..++..
T Consensus 12 l~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~--~l~~~~~~~~~~eln~sd~~~~~~vr~~i~~ 87 (319)
T PLN03025 12 LDDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAH--ELLGPNYKEAVLELNASDDRGIDVVRNKIKM 87 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH--HHhcccCccceeeecccccccHHHHHHHHHH
Confidence 3468898888888888776543 45577999999999999999987 33 22232 1222222322222211122222
Q ss_pred hhCCCCccccCCCCCHHHHHHHHHHhhCCceEEEEEecCCCc--chHHHHHHhhcCCCCCcEEEEecCcc
Q 041567 236 FLLPFSMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWST--NVLDVVREILLDNQNGSRVLITLTRI 303 (467)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivT~TR~ 303 (467)
+..... . .-.++.-++++|++..- ...+.+...+......+++|++ +..
T Consensus 88 ~~~~~~-----~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~-~n~ 138 (319)
T PLN03025 88 FAQKKV-----T-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALA-CNT 138 (319)
T ss_pred HHhccc-----c-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEE-eCC
Confidence 111000 0 00135668999999754 3445555555444456777776 543
No 46
>PRK08116 hypothetical protein; Validated
Probab=97.71 E-value=0.00032 Score=67.15 Aligned_cols=99 Identities=20% Similarity=0.174 Sum_probs=56.2
Q ss_pred EEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHhhCCCCccccCCCCCHHHHHHHHHHh
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMFLLPFSMLSKIKDKDYEMKKINLGEY 261 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (467)
.-+.++|.+|+|||.||..+++ .....-..+++++ ..+++ .+........ ..+..+ +.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~--~l~~~~~~v~~~~------~~~ll~~i~~~~~~~~-------~~~~~~----~~~~ 175 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIAN--ELIEKGVPVIFVN------FPQLLNRIKSTYKSSG-------KEDENE----IIRS 175 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEE------HHHHHHHHHHHHhccc-------cccHHH----HHHH
Confidence 3578999999999999999999 4433334456665 34455 5554443211 112222 3333
Q ss_pred hCCceEEEEEecCCC--cchHHH--HHHhhcC-CCCCcEEEEecCc
Q 041567 262 LMTKWYLIVLDDVWS--TNVLDV--VREILLD-NQNGSRVLITLTR 302 (467)
Q Consensus 262 L~~kr~LlVlDdv~~--~~~~~~--l~~~l~~-~~~gs~iivT~TR 302 (467)
+.+-. ||||||+.. ...|.. +...+.. -.+|..+|+| |.
T Consensus 176 l~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiT-sN 219 (268)
T PRK08116 176 LVNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVT-TN 219 (268)
T ss_pred hcCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEE-CC
Confidence 44333 899999943 344432 3322221 1245668888 54
No 47
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.00042 Score=72.13 Aligned_cols=133 Identities=12% Similarity=0.013 Sum_probs=72.4
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhh
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFL 237 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~ 237 (467)
-.+++|-+..++.|.+++..+. -...+.++|++|+||||+|+.+++.......++..+|.|.+.. .+.....
T Consensus 13 ~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-------~i~~~~h 84 (504)
T PRK14963 13 FDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-------AVRRGAH 84 (504)
T ss_pred HHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-------HHhcCCC
Confidence 3468999988888888887653 3456799999999999999999874221222222233322110 0000000
Q ss_pred CCCCccccCCCCCHHHHHHHHHHhh-----CCceEEEEEecCCCc--chHHHHHHhhcCCCCCcEEEEe
Q 041567 238 LPFSMLSKIKDKDYEMKKINLGEYL-----MTKWYLIVLDDVWST--NVLDVVREILLDNQNGSRVLIT 299 (467)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivT 299 (467)
...-..........+.+ ..+.+.+ .+++-++|+|+++.. ..++.+...+......+.+|++
T Consensus 85 ~dv~el~~~~~~~vd~i-R~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~ 152 (504)
T PRK14963 85 PDVLEIDAASNNSVEDV-RDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILA 152 (504)
T ss_pred CceEEecccccCCHHHH-HHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 00000000011122222 1222222 345668999999754 5677888777665556565555
No 48
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.70 E-value=0.00015 Score=78.36 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=37.5
Q ss_pred CCccccchhHHH---HHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCcc
Q 041567 158 NRNTVGLDDRME---ELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYF 212 (467)
Q Consensus 158 ~~~~vGr~~~~~---~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 212 (467)
-.+++|.+..+. .+.+.+..+ ....+.++|++|+||||||+.+++ ....+|
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f 80 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIAN--HTRAHF 80 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHH--HhcCcc
Confidence 356899888774 455555543 356678999999999999999998 444444
No 49
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.69 E-value=0.0001 Score=62.09 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=19.4
Q ss_pred EEEECCCCChHHHHHHHHhcC
Q 041567 185 VAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~~ 205 (467)
|.|+|++|+|||++|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999994
No 50
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=0.001 Score=67.07 Aligned_cols=46 Identities=11% Similarity=0.032 Sum_probs=37.6
Q ss_pred CccccchhHHHHHHHHHhcCCC--------CcEEEEEECCCCChHHHHHHHHhc
Q 041567 159 RNTVGLDDRMEELLDLLIEGPN--------QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
++++|-+..++.|.+.+..+.. -..-+.++|++|+|||++|..+.+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~ 58 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAA 58 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3588999999999999876531 245688999999999999999876
No 51
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.68 E-value=0.00046 Score=73.32 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=39.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|.+..+..|.+++..+. -...+.++|..|+||||+|+.+.+
T Consensus 15 FddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk 60 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAK 60 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence 3578999999999999988653 245688999999999999999877
No 52
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.67 E-value=8.1e-05 Score=74.78 Aligned_cols=55 Identities=15% Similarity=0.163 Sum_probs=42.0
Q ss_pred CCCCccccchhHHHHHHHHHhcC-----------CCCcEEEEEECCCCChHHHHHHHHhcCccccCcc
Q 041567 156 SKNRNTVGLDDRMEELLDLLIEG-----------PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYF 212 (467)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 212 (467)
....++.|+++.+++|.+.+... -...+-+.++|++|+|||++|+.+++ +....|
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~ 184 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF 184 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE
Confidence 44567899999999999877432 02345688999999999999999998 444443
No 53
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=0.00072 Score=68.67 Aligned_cols=141 Identities=11% Similarity=0.097 Sum_probs=74.5
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEE-cCCCCCHHHHH-HHHH
Q 041567 157 KNRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIP-APYHYDAYQIL-DIVT 234 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~-v~~~~~~~~~~-~il~ 234 (467)
.-.+++|-+..++.|.+++..+. -...+.++|+.|+||||+|..+.+.-.-...++...|.. ...++...... .+..
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~ 92 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDA 92 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhc
Confidence 34578999998898888887653 234588999999999999999887321111111111110 01111111112 2221
Q ss_pred HhhCCCCccccCCCCCHHHHHHHHHHhh-----CCceEEEEEecCCCc--chHHHHHHhhcCCCCCcEEEEe
Q 041567 235 MFLLPFSMLSKIKDKDYEMKKINLGEYL-----MTKWYLIVLDDVWST--NVLDVVREILLDNQNGSRVLIT 299 (467)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivT 299 (467)
.........+.......+++.+ +.+.+ .+++-++|+|++..- ..++.+...+......+.+|++
T Consensus 93 ~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~ 163 (397)
T PRK14955 93 GTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFA 163 (397)
T ss_pred CCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 1111000000001112233332 22333 245568899998643 5678888887766667776655
No 54
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.66 E-value=0.00072 Score=69.74 Aligned_cols=120 Identities=13% Similarity=0.106 Sum_probs=71.5
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCc------cc-------------cCccceEEEE
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSS------YV-------------KHYFDHLAWI 218 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~------~~-------------~~~F~~~~wv 218 (467)
-.+++|-+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+-- .. ...+..++.+
T Consensus 12 f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei 90 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI 90 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence 3568999988888888876653 23478899999999999999887510 00 0111223333
Q ss_pred EcCCCCCHHHHHHHHHHhhCCCCccccCCCCCHHHHHHHHHHhhCCceEEEEEecCCCc--chHHHHHHhhcCCCCCcEE
Q 041567 219 PAPYHYDAYQILDIVTMFLLPFSMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWST--NVLDVVREILLDNQNGSRV 296 (467)
Q Consensus 219 ~v~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~i 296 (467)
+.+.....+++-.++...... -+.++.-++|+|++..- ...+.+...+-...+.+++
T Consensus 91 daas~~~vddIR~Iie~~~~~---------------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~f 149 (491)
T PRK14964 91 DAASNTSVDDIKVILENSCYL---------------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKF 149 (491)
T ss_pred ecccCCCHHHHHHHHHHHHhc---------------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEE
Confidence 333322222222222111100 01245668999999643 4577788877766667777
Q ss_pred EEe
Q 041567 297 LIT 299 (467)
Q Consensus 297 ivT 299 (467)
|++
T Consensus 150 Ila 152 (491)
T PRK14964 150 ILA 152 (491)
T ss_pred EEE
Confidence 765
No 55
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.64 E-value=0.00066 Score=71.26 Aligned_cols=46 Identities=15% Similarity=0.128 Sum_probs=38.1
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|-+..++.|.+++..+. -...+.++|..|+||||+|+.+.+
T Consensus 15 f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk 60 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAK 60 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999887653 234578999999999999999976
No 56
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.00052 Score=74.56 Aligned_cols=47 Identities=15% Similarity=0.139 Sum_probs=38.8
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
-.+++|-+..++.|.+++..+. -...+.++|..|+||||+|+.+++.
T Consensus 15 FddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~ 61 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKG 61 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999887653 2345689999999999999999983
No 57
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.001 Score=69.54 Aligned_cols=104 Identities=18% Similarity=0.165 Sum_probs=69.8
Q ss_pred CCCCccccchhHHHHHHHHHhc----CCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-
Q 041567 156 SKNRNTVGLDDRMEELLDLLIE----GPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL- 230 (467)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~- 230 (467)
+-+.+-+|.++.+++|++++.- +..+.+++..+|++|+|||++|+.++. .....| +-++++.-.|..+|-
T Consensus 408 iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 408 ILDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEIKG 482 (906)
T ss_pred hhcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhhcc
Confidence 4567789999999999999853 345679999999999999999999998 555555 234666655555443
Q ss_pred HHHHHhhCCCCccccCCCCCHHHHHHHHHHhhCCceEEEEEecCCC
Q 041567 231 DIVTMFLLPFSMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWS 276 (467)
Q Consensus 231 ~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 276 (467)
.==..+ .. -+..+++.|++. +...-|+.+|.|..
T Consensus 483 HRRTYV----------GA-MPGkiIq~LK~v-~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 483 HRRTYV----------GA-MPGKIIQCLKKV-KTENPLILIDEVDK 516 (906)
T ss_pred cceeee----------cc-CChHHHHHHHhh-CCCCceEEeehhhh
Confidence 211111 11 123445555443 34567888898853
No 58
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.62 E-value=0.00079 Score=69.96 Aligned_cols=144 Identities=8% Similarity=0.028 Sum_probs=75.8
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccce-EEEEEcCCCCCHHHHH-HHHHH
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDH-LAWIPAPYHYDAYQIL-DIVTM 235 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~v~~~~~~~~~~-~il~~ 235 (467)
-.+++|-+..+..|...+..+. -...+.++|+.|+||||+|+.+++.-........ ..+. .+...... .+...
T Consensus 20 f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~----~C~~C~~C~~i~~~ 94 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIK----TCEQCTNCISFNNH 94 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcC----CCCCChHHHHHhcC
Confidence 3568999999998888776653 3457889999999999999999873211111000 0000 00001111 11110
Q ss_pred hhCCCCccccCCCCCHHHHHHHHHHh----hCCceEEEEEecCCCc--chHHHHHHhhcCCCCCcEEEE-ecCcccccc
Q 041567 236 FLLPFSMLSKIKDKDYEMKKINLGEY----LMTKWYLIVLDDVWST--NVLDVVREILLDNQNGSRVLI-TLTRIKMVT 307 (467)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv-T~TR~~~v~ 307 (467)
........+.......+++...+... +.+++-++|+|+++.- ..++.+...+......+.+|+ | |+...+.
T Consensus 95 ~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aT-te~~kI~ 172 (507)
T PRK06645 95 NHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFAT-TEVQKIP 172 (507)
T ss_pred CCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEe-CChHHhh
Confidence 00000000000111223332222221 2356778999999864 568888888776666666654 5 5554444
No 59
>PRK08727 hypothetical protein; Validated
Probab=97.59 E-value=0.0003 Score=65.96 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=27.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPA 220 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 220 (467)
...+.|+|..|+|||.|++.+++ ........+.|+++
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~--~~~~~~~~~~y~~~ 77 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCA--AAEQAGRSSAYLPL 77 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEeH
Confidence 35699999999999999999988 33333345566654
No 60
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.58 E-value=0.0007 Score=69.94 Aligned_cols=47 Identities=17% Similarity=0.126 Sum_probs=37.7
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
-.+++|.+.....|...+..+. -...+.++|++|+||||+|+.+.+.
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999888888888776553 3356889999999999999999873
No 61
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.57 E-value=0.00069 Score=70.71 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=38.6
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.++||-+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+
T Consensus 15 f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk 60 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAK 60 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999997653 244678999999999999998887
No 62
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.57 E-value=0.00065 Score=72.05 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=37.7
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|-+..++.|.+++..+. -...+.++|..|+||||+|+.+.+
T Consensus 15 f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk 60 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAK 60 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3568998888888888887653 345678999999999999999865
No 63
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.57 E-value=0.00027 Score=65.79 Aligned_cols=37 Identities=27% Similarity=0.447 Sum_probs=30.7
Q ss_pred EEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcC
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAP 221 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~ 221 (467)
-.++|+|..|+|||||...+.. .....|+.+++++-.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~~ 50 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITPE 50 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEecC
Confidence 3677999999999999999988 577889888777553
No 64
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.55 E-value=0.00068 Score=69.31 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=38.5
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|-+..+..|..++..+. -...+.++|+.|+||||+|+.+++
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk 62 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAK 62 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999988887654 234678999999999999999988
No 65
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.55 E-value=0.0011 Score=69.79 Aligned_cols=47 Identities=11% Similarity=0.134 Sum_probs=39.3
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 157 KNRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.-.+++|.+..++.+.+.+..+. -...+.++|+.|+||||+|+.+.+
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk 60 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAK 60 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999887653 345788999999999999999987
No 66
>PRK10536 hypothetical protein; Provisional
Probab=97.54 E-value=0.0011 Score=62.19 Aligned_cols=129 Identities=10% Similarity=0.138 Sum_probs=74.5
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEc----CCC-----CCHH
Q 041567 157 KNRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPA----PYH-----YDAY 227 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v----~~~-----~~~~ 227 (467)
+-..+.++......++.+|... .++.+.|.+|.|||+||..+..+.-..+.|+..+-+.- ++. -+..
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~ 128 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIA 128 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHH
Confidence 3345677889999999988653 49999999999999999988774222344554443321 110 1222
Q ss_pred HHH-----HHHHHhhCCCCccccCCCCCHHHHHHHH-----------HHhhCCce---EEEEEecCCCcchHHHHHHhhc
Q 041567 228 QIL-----DIVTMFLLPFSMLSKIKDKDYEMKKINL-----------GEYLMTKW---YLIVLDDVWSTNVLDVVREILL 288 (467)
Q Consensus 228 ~~~-----~il~~l~~~~~~~~~~~~~~~~~~~~~l-----------~~~L~~kr---~LlVlDdv~~~~~~~~l~~~l~ 288 (467)
+-+ -+...|..-. ..+.....+ -.+++|+. -+||+|...+... ..+...+.
T Consensus 129 eK~~p~~~pi~D~L~~~~---------~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~-~~~k~~lt 198 (262)
T PRK10536 129 EKFAPYFRPVYDVLVRRL---------GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA-AQMKMFLT 198 (262)
T ss_pred HHHHHHHHHHHHHHHHHh---------ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH-HHHHHHHh
Confidence 211 1122221100 001111111 12456654 4999999977644 44444455
Q ss_pred CCCCCcEEEEe
Q 041567 289 DNQNGSRVLIT 299 (467)
Q Consensus 289 ~~~~gs~iivT 299 (467)
.-+.+|++|+|
T Consensus 199 R~g~~sk~v~~ 209 (262)
T PRK10536 199 RLGENVTVIVN 209 (262)
T ss_pred hcCCCCEEEEe
Confidence 55689999999
No 67
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.53 E-value=0.00069 Score=72.09 Aligned_cols=142 Identities=12% Similarity=0.095 Sum_probs=75.2
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHh
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMF 236 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l 236 (467)
-.++||-+..++.|.+.+..+. -...+.++|..|+||||+|+.+.+. +.... .+ .+..+...... .|...-
T Consensus 15 f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~--L~c~~----~~-~~~pCg~C~~C~~i~~g~ 86 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKG--LNCET----GI-TATPCGECDNCREIEQGR 86 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHh--hhhcc----CC-CCCCCCCCHHHHHHHcCC
Confidence 3568999999999999887653 2345789999999999999999873 21110 00 01111111222 222110
Q ss_pred hCCCCccccCCCCCHHHHH---HHHHHh-hCCceEEEEEecCCCc--chHHHHHHhhcCCCCCcEEEEecCcccccc
Q 041567 237 LLPFSMLSKIKDKDYEMKK---INLGEY-LMTKWYLIVLDDVWST--NVLDVVREILLDNQNGSRVLITLTRIKMVT 307 (467)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~---~~l~~~-L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivT~TR~~~v~ 307 (467)
....-..+.......+++. ..+... ..+++-++|+|++..- ...+.|+..+-......++|++.|....+.
T Consensus 87 ~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 87 FVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred CCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 0000000000011222222 222111 2456679999999743 567777777766555666555404444443
No 68
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.51 E-value=0.00022 Score=68.13 Aligned_cols=45 Identities=18% Similarity=0.147 Sum_probs=33.1
Q ss_pred ccccchhHHHHHHHHHhc-------------CCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 160 NTVGLDDRMEELLDLLIE-------------GPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 160 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.++|.+..+++|.+.... ..+....+.++|++|+||||+|+.+++
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 478888887776543211 123456788999999999999999986
No 69
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.51 E-value=0.0015 Score=65.38 Aligned_cols=46 Identities=13% Similarity=0.149 Sum_probs=38.4
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|.+..++.+.+.+..+. -...+.++|++|+||||+|+.+..
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~ 58 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAK 58 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999887653 345788999999999999988876
No 70
>CHL00181 cbbX CbbX; Provisional
Probab=97.51 E-value=0.0011 Score=64.07 Aligned_cols=45 Identities=20% Similarity=0.229 Sum_probs=31.1
Q ss_pred ccccchhHHHHHHHHH---hc-------C---CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 160 NTVGLDDRMEELLDLL---IE-------G---PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 160 ~~vGr~~~~~~l~~~L---~~-------~---~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+++|.+..+++|.++. .- + ......+.++|.+|+||||+|+.+++
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4778777777555442 11 0 11234588999999999999999977
No 71
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0025 Score=67.00 Aligned_cols=104 Identities=15% Similarity=0.122 Sum_probs=69.2
Q ss_pred CCCCccccchhHHHHHHHHHhc----CCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-
Q 041567 156 SKNRNTVGLDDRMEELLDLLIE----GPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL- 230 (467)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~- 230 (467)
+-+.+-+|.++.+++|++.|.- ..-..++++++|++|+|||+|++.++. .....| +-++++.--|..++-
T Consensus 320 iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEIRG 394 (782)
T COG0466 320 ILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEIRG 394 (782)
T ss_pred HhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHhcc
Confidence 4567789999999999999853 233568999999999999999999998 666666 234555554544433
Q ss_pred HHHHHhhCCCCccccCCCCCHHHHHHHHHHhhCCceEEEEEecCCC
Q 041567 231 DIVTMFLLPFSMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWS 276 (467)
Q Consensus 231 ~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 276 (467)
.==..+ ..+ +..+.+.+++. +.+.-|++||.+..
T Consensus 395 HRRTYI----------Gam-PGrIiQ~mkka-~~~NPv~LLDEIDK 428 (782)
T COG0466 395 HRRTYI----------GAM-PGKIIQGMKKA-GVKNPVFLLDEIDK 428 (782)
T ss_pred cccccc----------ccC-ChHHHHHHHHh-CCcCCeEEeechhh
Confidence 211111 111 23344444433 44678899999853
No 72
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.51 E-value=0.004 Score=62.25 Aligned_cols=48 Identities=17% Similarity=0.138 Sum_probs=39.4
Q ss_pred CCCCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 156 SKNRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
....+++|-+...+.|.+.+..+. -...+.++|+.|+||+|+|..+.+
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~ 63 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMAR 63 (365)
T ss_pred CchhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 345679999999999999888763 344688999999999999987766
No 73
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.47 E-value=0.00076 Score=68.29 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=39.1
Q ss_pred CCCCccccchhHHHHHHHHHhcC-----------CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 156 SKNRNTVGLDDRMEELLDLLIEG-----------PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
....++.|+++.+++|.+.+... -...+-|.++|++|+|||++|+.+++
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~ 187 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH 187 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH
Confidence 34457889999999999876421 12456688999999999999999998
No 74
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.47 E-value=0.00046 Score=64.81 Aligned_cols=38 Identities=8% Similarity=0.169 Sum_probs=27.6
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAP 221 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~ 221 (467)
.+.+.|+|++|+|||+|++.+++. ....-..+.++++.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~ 82 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLD 82 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHH
Confidence 457899999999999999999983 33322345566553
No 75
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.44 E-value=0.0014 Score=61.15 Aligned_cols=103 Identities=17% Similarity=0.129 Sum_probs=63.9
Q ss_pred HHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCcc------ceEEEEEcCCCCCHHHHHHHHHHhhCCCCc-c
Q 041567 171 LLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYF------DHLAWIPAPYHYDAYQILDIVTMFLLPFSM-L 243 (467)
Q Consensus 171 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F------~~~~wv~v~~~~~~~~~~~il~~l~~~~~~-~ 243 (467)
|-++|..+=..-.++.|+|.+|+|||+||..+... ....- ..++|++....++...+..+.......... .
T Consensus 8 lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~ 85 (226)
T cd01393 8 LDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVL 85 (226)
T ss_pred HHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhh
Confidence 33444444345689999999999999999988763 22223 457899988877776665555554322100 0
Q ss_pred c---cCCCCCHHHHHHHHHHhhC----CceEEEEEecCC
Q 041567 244 S---KIKDKDYEMKKINLGEYLM----TKWYLIVLDDVW 275 (467)
Q Consensus 244 ~---~~~~~~~~~~~~~l~~~L~----~kr~LlVlDdv~ 275 (467)
+ -....+.+++...+..... .+.-|+|+|.+.
T Consensus 86 ~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 86 DNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred ccEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 0 0122345566666665543 355699999984
No 76
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.43 E-value=0.0054 Score=61.03 Aligned_cols=49 Identities=18% Similarity=0.193 Sum_probs=41.0
Q ss_pred CCCCCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 155 SSKNRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 155 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
|.....++|-++..+.+...+..+. -...+.|+|..|+||||+|..+.+
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~ 67 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLAN 67 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHH
Confidence 4455679999999999999997663 345688999999999999998887
No 77
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.42 E-value=0.0016 Score=69.06 Aligned_cols=47 Identities=13% Similarity=0.135 Sum_probs=39.4
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 157 KNRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.-.+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk 68 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILAR 68 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999887653 344688999999999999999987
No 78
>PRK08118 topology modulation protein; Reviewed
Probab=97.42 E-value=6.9e-05 Score=66.45 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=27.4
Q ss_pred EEEEEECCCCChHHHHHHHHhcCcccc-CccceEEE
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNSSYVK-HYFDHLAW 217 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~w 217 (467)
+.|.|+|++|+||||||+.+++...+. -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358899999999999999999854333 45676665
No 79
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.41 E-value=0.00079 Score=62.76 Aligned_cols=99 Identities=16% Similarity=0.103 Sum_probs=59.0
Q ss_pred HHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHH----hhCCCCccccC
Q 041567 171 LLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTM----FLLPFSMLSKI 246 (467)
Q Consensus 171 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~----l~~~~~~~~~~ 246 (467)
|-++|..+=..-.++.|+|.+|+|||+||.+++.. ....-..++|++.. .++...+.++... +..... -.
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~~~~~~~~~~~~~~~~~---~~ 85 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERFKQIAGEDFEELLSNII---IF 85 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHHHHHHhhChHhHhhCeE---EE
Confidence 44444444345789999999999999999999873 33344678899887 5665554444433 110000 00
Q ss_pred CCCCH---HHHHHHHHHhhCCceEEEEEecCC
Q 041567 247 KDKDY---EMKKINLGEYLMTKWYLIVLDDVW 275 (467)
Q Consensus 247 ~~~~~---~~~~~~l~~~L~~kr~LlVlDdv~ 275 (467)
...+. .+....+...+..+.-++|+|.+.
T Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 86 EPSSFEEQSEAIRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred eCCCHHHHHHHHHHHHHHHHhcccEEEEeCcH
Confidence 11222 233344444554667799999983
No 80
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.41 E-value=0.0016 Score=71.65 Aligned_cols=46 Identities=20% Similarity=0.107 Sum_probs=38.3
Q ss_pred CccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 159 RNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.+++|-+..++.|.+++..+. -...+.++|..|+||||+|+.+.+.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~ 60 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARS 60 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999988653 2346789999999999999999773
No 81
>PRK05642 DNA replication initiation factor; Validated
Probab=97.41 E-value=0.00079 Score=63.19 Aligned_cols=37 Identities=11% Similarity=0.179 Sum_probs=27.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPA 220 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 220 (467)
...+.|+|..|+|||.|++.+++ .....-..++|++.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~~~ 81 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYLPL 81 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEeeH
Confidence 36788999999999999999987 33322234567654
No 82
>PRK12377 putative replication protein; Provisional
Probab=97.39 E-value=0.00053 Score=64.64 Aligned_cols=38 Identities=13% Similarity=0.052 Sum_probs=28.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAP 221 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~ 221 (467)
...+.++|.+|+|||+||..+.+ ........++++++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~~~ 138 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVTVP 138 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEHH
Confidence 46788999999999999999999 444444445676543
No 83
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.37 E-value=0.0031 Score=57.02 Aligned_cols=34 Identities=15% Similarity=0.122 Sum_probs=25.4
Q ss_pred HHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 170 ELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 170 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+.+.+..+. -...+.++|+.|+||||+|..+.+
T Consensus 3 ~l~~~i~~~~-~~~~~L~~G~~G~gkt~~a~~~~~ 36 (188)
T TIGR00678 3 QLKRALEKGR-LAHAYLFAGPEGVGKELLALALAK 36 (188)
T ss_pred HHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3455554432 346788999999999999988876
No 84
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.37 E-value=0.0015 Score=60.58 Aligned_cols=123 Identities=13% Similarity=0.137 Sum_probs=73.6
Q ss_pred CCCCCccccchhHHHHHHHHHh---cCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHH
Q 041567 155 SSKNRNTVGLDDRMEELLDLLI---EGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILD 231 (467)
Q Consensus 155 ~~~~~~~vGr~~~~~~l~~~L~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 231 (467)
++.-.+++|.|..++.|++-.. .+ .+..-+.+||..|.|||+|++.+.+ +....= .--|.+.+.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G-~pannvLL~G~rGtGKSSlVkall~--~y~~~G--LRlIev~k~-------- 89 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQG-LPANNVLLWGARGTGKSSLVKALLN--EYADQG--LRLIEVSKE-------- 89 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcC-CCCcceEEecCCCCCHHHHHHHHHH--HHhhcC--ceEEEECHH--------
Confidence 3566789999999998886432 22 2456677899999999999999988 222211 111222221
Q ss_pred HHHHhhCCCCccccCCCCCHHHHHHHHHHhhCCceEEEEEecCCC---cchHHHHHHhhcCC----CCCcEEEEecCccc
Q 041567 232 IVTMFLLPFSMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWS---TNVLDVVREILLDN----QNGSRVLITLTRIK 304 (467)
Q Consensus 232 il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~~----~~gs~iivT~TR~~ 304 (467)
.-.+...+.+.++. ...||+|.+||+.- +.....++..+..+ ...-.|..| |..+
T Consensus 90 ---------------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyAT-SNRR 151 (249)
T PF05673_consen 90 ---------------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYAT-SNRR 151 (249)
T ss_pred ---------------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEe-cchh
Confidence 12233444444442 34799999999953 34566666665532 123345566 5555
Q ss_pred cccc
Q 041567 305 MVTR 308 (467)
Q Consensus 305 ~v~~ 308 (467)
++..
T Consensus 152 HLv~ 155 (249)
T PF05673_consen 152 HLVP 155 (249)
T ss_pred hccc
Confidence 4443
No 85
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.36 E-value=0.00066 Score=65.60 Aligned_cols=95 Identities=16% Similarity=0.161 Sum_probs=57.3
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCccccCCCCCHHHHHHHHHH
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLSKIKDKDYEMKKINLGE 260 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~ 260 (467)
.++.+.+||++|.||||||+.+.+...-.. ..||..|-...- ..+...+.+.-++
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~---------------------t~dvR~ife~aq~ 215 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAK---------------------TNDVRDIFEQAQN 215 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccc---------------------hHHHHHHHHHHHH
Confidence 578888999999999999999998533333 345665543211 1122222222222
Q ss_pred --hhCCceEEEEEecCCCc--chHHHHHHhhcCCCCCcEEEE--ecCccc
Q 041567 261 --YLMTKWYLIVLDDVWST--NVLDVVREILLDNQNGSRVLI--TLTRIK 304 (467)
Q Consensus 261 --~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv--T~TR~~ 304 (467)
.+.++|..|.+|.|..- .+-+ ..||.-.+|+-++| | |-+.
T Consensus 216 ~~~l~krkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGAT-TENP 261 (554)
T KOG2028|consen 216 EKSLTKRKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGAT-TENP 261 (554)
T ss_pred HHhhhcceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecc-cCCC
Confidence 24568899999999532 2222 23566667776665 4 5554
No 86
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.36 E-value=0.00076 Score=62.06 Aligned_cols=93 Identities=11% Similarity=0.050 Sum_probs=56.9
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhh----CCCCccccCCCCCHHHHH
Q 041567 180 NQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFL----LPFSMLSKIKDKDYEMKK 255 (467)
Q Consensus 180 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~----~~~~~~~~~~~~~~~~~~ 255 (467)
+...++.|+|.+|+|||+|+.++.. .....-..++|++... ++...+.+++.... ..--..+.....+.....
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~--~~~~~g~~v~yi~~e~-~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAV--NAARQGKKVVYIDTEG-LSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEECCC-CCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 4578999999999999999999887 3334456789999876 66666655544321 000000000111222335
Q ss_pred HHHHHhhCC-ceEEEEEecCC
Q 041567 256 INLGEYLMT-KWYLIVLDDVW 275 (467)
Q Consensus 256 ~~l~~~L~~-kr~LlVlDdv~ 275 (467)
..+.+.+.. +.-+||+|.+.
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcH
Confidence 555555544 45689999984
No 87
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.36 E-value=0.0029 Score=67.34 Aligned_cols=141 Identities=8% Similarity=0.027 Sum_probs=72.6
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEE-cCCCCCHHHHH-HHHHH
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIP-APYHYDAYQIL-DIVTM 235 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~-v~~~~~~~~~~-~il~~ 235 (467)
-.+++|-+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+.-.....++.-.|.. +...++..... .+...
T Consensus 15 f~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g 93 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAG 93 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhcc
Confidence 4568999999999988887653 234588999999999999998876311111111011111 01111111112 22111
Q ss_pred hhCCCCccccCCCCCHHHHHHHHHHh----hCCceEEEEEecCCCc--chHHHHHHhhcCCCCCcEEEEe
Q 041567 236 FLLPFSMLSKIKDKDYEMKKINLGEY----LMTKWYLIVLDDVWST--NVLDVVREILLDNQNGSRVLIT 299 (467)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivT 299 (467)
-..+....+.......+++...+... ..+++-++|+|++..- ...+.|...+-.....+.+|++
T Consensus 94 ~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~ 163 (620)
T PRK14954 94 TSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFA 163 (620)
T ss_pred CCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 11100000000111233333322222 2344557899998653 4577788777765556665554
No 88
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.35 E-value=0.0028 Score=67.70 Aligned_cols=134 Identities=11% Similarity=0.136 Sum_probs=73.9
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHh
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMF 236 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l 236 (467)
-.+++|-+..++.|..++..+. -...+.++|..|+||||+|+.+.+. +.... +-.-...++..... .|....
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~--l~c~~----~~~~~~~c~~c~~c~~i~~~~ 87 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKA--VNCTT----NDPKGRPCGTCEMCRAIAEGS 87 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHH--hcCCC----CCCCCCCCccCHHHHHHhcCC
Confidence 3578999999999988887653 3456789999999999999999873 22110 00001122222333 333222
Q ss_pred hCCCCccccCCCCCHHHHHHHHHHhh-----CCceEEEEEecCCCc--chHHHHHHhhcCCCCCcEEEEe
Q 041567 237 LLPFSMLSKIKDKDYEMKKINLGEYL-----MTKWYLIVLDDVWST--NVLDVVREILLDNQNGSRVLIT 299 (467)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivT 299 (467)
....-..........+++. .+.+.+ .+++-++|+|++..- +..+.|...+......+.+|++
T Consensus 88 ~~d~~~i~~~~~~~vd~ir-~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~ 156 (585)
T PRK14950 88 AVDVIEMDAASHTSVDDAR-EIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILA 156 (585)
T ss_pred CCeEEEEeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 1110000000112223322 222222 245668999998643 5577777777665556667666
No 89
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.35 E-value=0.003 Score=66.77 Aligned_cols=46 Identities=20% Similarity=0.073 Sum_probs=38.5
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|-+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk 57 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILAR 57 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999987653 344578999999999999999987
No 90
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.35 E-value=0.00035 Score=77.49 Aligned_cols=45 Identities=16% Similarity=0.267 Sum_probs=37.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 159 RNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..++||+++++++++.|.... ..-+.++|.+|+|||++|..++..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999997654 234469999999999999999873
No 91
>PF14516 AAA_35: AAA-like domain
Probab=97.33 E-value=0.028 Score=55.63 Aligned_cols=117 Identities=13% Similarity=0.035 Sum_probs=71.7
Q ss_pred CCCCCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCC-----CCHHHH
Q 041567 155 SSKNRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYH-----YDAYQI 229 (467)
Q Consensus 155 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~-----~~~~~~ 229 (467)
|.+.+..|.|...-+++.+.|... ...+.|.|+-.+|||+|...+.+..+. ..|. .+++++..- .+...+
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~-~~~~-~v~id~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQ-QGYR-CVYIDLQQLGSAIFSDLEQF 81 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHH-CCCE-EEEEEeecCCCcccCCHHHH
Confidence 356667889997777888777664 358999999999999999999874222 2443 456766541 245555
Q ss_pred H-HHHHHhhCCCCcccc----C--CCCCHHHHHHHHHHhh-C--CceEEEEEecCCC
Q 041567 230 L-DIVTMFLLPFSMLSK----I--KDKDYEMKKINLGEYL-M--TKWYLIVLDDVWS 276 (467)
Q Consensus 230 ~-~il~~l~~~~~~~~~----~--~~~~~~~~~~~l~~~L-~--~kr~LlVlDdv~~ 276 (467)
+ .+...+...-..... + ...+.......+.+.+ . +++.+|++|++..
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~ 138 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDR 138 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhh
Confidence 5 555554442211110 0 1112234444455443 2 5899999999964
No 92
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.32 E-value=0.0019 Score=65.51 Aligned_cols=206 Identities=17% Similarity=0.039 Sum_probs=109.8
Q ss_pred EEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCccccCCCCCHHHHHHHHHHhhC
Q 041567 184 VVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLSKIKDKDYEMKKINLGEYLM 263 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 263 (467)
++.|.|+-++||||+++.+... ..+. .++++..+..... ....+....+.+.-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~---------------------~~l~d~~~~~~~~~~ 92 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDR---------------------IELLDLLRAYIELKE 92 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcch---------------------hhHHHHHHHHHHhhc
Confidence 9999999999999999777662 2222 5555443321111 111111122222212
Q ss_pred CceEEEEEecCCCcchHHHHHHhhcCCCCCcEEEEecCccccccc--cc--cccc----ccCCCChHHH-----------
Q 041567 264 TKWYLIVLDDVWSTNVLDVVREILLDNQNGSRVLITLTRIKMVTR--FQ--FENG----ESVRLDLVPT----------- 324 (467)
Q Consensus 264 ~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivT~TR~~~v~~--~~--F~~~----~~~~~~~~~~----------- 324 (467)
.++.+|+||.|.....|+.....+.+.++. +|++| +-+..... .. |..+ .-.|-...+.
T Consensus 93 ~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~it-gsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~~~~ 170 (398)
T COG1373 93 REKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLIT-GSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEIEPS 170 (398)
T ss_pred cCCceEEEecccCchhHHHHHHHHHccccc-eEEEE-CCchhhhccchhhhcCCCceeEEECCCCHHHHHhhcccccchh
Confidence 277899999999999999999999887766 88888 66654443 21 1111 0011111111
Q ss_pred ----HHHHHHHcCCChHHHHHHHhc-cCcccchhhccc--hhhHHHHhhcCCc-hhhHHHHhhhccCCCCCccChhHHHH
Q 041567 325 ----GGPLRVTYQGWPFLILYHGSI-SLEENIREVFET--PLGLLIVICCKLP-FHLKLCFLYLSVFPAHLEISTRQLYQ 396 (467)
Q Consensus 325 ----~~~i~~~c~GlPLai~~i~~~-~~~~~~~~~l~~--i~~~l~~sy~~L~-~~~k~cfl~~s~fp~~~~i~~~~Li~ 396 (467)
.-+-.-..||.|-++..-... + ....+.. ...+....-. -+ ..++..+.+++..+ +..+.-..|.+
T Consensus 171 ~~~~~f~~Yl~~GGfP~~v~~~~~~~~----~~~~~~~~~~~Di~~~~~~-~~~~~~k~i~~~l~~~~-g~~~s~~~la~ 244 (398)
T COG1373 171 KLELLFEKYLETGGFPESVKADLSEKK----LKEYLDTILKRDIIERGKI-ENADLMKRILRFLASNI-GSPISYSSLAR 244 (398)
T ss_pred HHHHHHHHHHHhCCCcHHHhCcchhhH----HHHHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHhhc-CCccCHHHHHH
Confidence 122223579999886533222 1 1111111 1111112111 11 23555555555443 23345555555
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHHhCccccccc
Q 041567 397 LWIAEGFIPDNSEATAEKYLEQLINRGFVDARK 429 (467)
Q Consensus 397 ~W~aeg~i~~~~e~~~~~~l~~Lv~~~ll~~~~ 429 (467)
.+- | ....+..+|++.|.+.-++....
T Consensus 245 ~l~--~----is~~Ti~~Yl~~le~~fll~~~~ 271 (398)
T COG1373 245 ELK--G----ISKDTIRKYLSYLEDAFLLFLVP 271 (398)
T ss_pred HHh--c----cchHHHHHHHHHHHHhhheEEec
Confidence 442 0 22677888888888888776443
No 93
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.31 E-value=0.0032 Score=63.34 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=39.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|.+...+.+.+.+..+. -.+.+.++|++|+||||+|..+.+
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~ 61 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILAR 61 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999997653 346888999999999999999977
No 94
>PRK08181 transposase; Validated
Probab=97.31 E-value=0.00046 Score=65.85 Aligned_cols=35 Identities=9% Similarity=-0.042 Sum_probs=25.8
Q ss_pred EEEEEECCCCChHHHHHHHHhcCccccCccceEEEEE
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIP 219 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 219 (467)
.-+.++|.+|+|||.||..+.+ ........++|++
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeee
Confidence 4588999999999999999988 3333333455654
No 95
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.28 E-value=0.0023 Score=61.89 Aligned_cols=45 Identities=11% Similarity=0.123 Sum_probs=29.9
Q ss_pred ccccchhHHHHHHHHHh---cC----------CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 160 NTVGLDDRMEELLDLLI---EG----------PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 160 ~~vGr~~~~~~l~~~L~---~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.++|.++.+++|.++.. .. .....-+.++|.+|.|||++|+.+.+
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHH
Confidence 46777777776655321 10 11223578999999999999977765
No 96
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.27 E-value=0.024 Score=55.87 Aligned_cols=36 Identities=11% Similarity=0.057 Sum_probs=27.1
Q ss_pred EEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPA 220 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 220 (467)
.-+.++|.+|+|||.||..+++. ....-..++++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEH
Confidence 67899999999999999999983 3333234566654
No 97
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.21 E-value=0.0058 Score=63.48 Aligned_cols=46 Identities=11% Similarity=0.022 Sum_probs=38.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|-+..+..|.+.+..+. -...+.++|+.|+||||+|+.+..
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk 60 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAK 60 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3468899999999999987653 345677899999999999999876
No 98
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.21 E-value=0.0026 Score=65.41 Aligned_cols=98 Identities=19% Similarity=0.274 Sum_probs=57.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccc--eEEEEEcCCCCCHHHHH-HHHHHhhCCCCccccCCCCCHHHHHHHH
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFD--HLAWIPAPYHYDAYQIL-DIVTMFLLPFSMLSKIKDKDYEMKKINL 258 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~v~~~~~~~~~~-~il~~l~~~~~~~~~~~~~~~~~~~~~l 258 (467)
..-+.|+|.+|+|||+|++.+++ .+....+ .++|++. .+++ .+...+... +.+ .+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~----------~~~----~f 187 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLVDSMKEG----------KLN----EF 187 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc----------cHH----HH
Confidence 45689999999999999999999 4444332 3566643 4566 666665431 112 23
Q ss_pred HHhhCCceEEEEEecCCCc---chH-HHHHHhhcC-CCCCcEEEEecCc
Q 041567 259 GEYLMTKWYLIVLDDVWST---NVL-DVVREILLD-NQNGSRVLITLTR 302 (467)
Q Consensus 259 ~~~L~~kr~LlVlDdv~~~---~~~-~~l~~~l~~-~~~gs~iivT~TR 302 (467)
++.+..+.-+|++||+... ..+ +.+...+.. ...|..||+| |.
T Consensus 188 ~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIit-sd 235 (440)
T PRK14088 188 REKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVIC-SD 235 (440)
T ss_pred HHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEE-CC
Confidence 3333334568999999642 111 223332221 1224568888 75
No 99
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.21 E-value=0.0023 Score=60.19 Aligned_cols=93 Identities=15% Similarity=0.128 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHhhCCCCccccC
Q 041567 168 MEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMFLLPFSMLSKI 246 (467)
Q Consensus 168 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l~~~~~~~~~~ 246 (467)
+..+.++...-......+.++|.+|+|||+||..+++. ....-..+++++ ..+++ .+-.....
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it------~~~l~~~l~~~~~~-------- 148 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIIT------VADIMSAMKDTFSN-------- 148 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE------HHHHHHHHHHHHhh--------
Confidence 34444444332223457889999999999999999984 333334456664 34444 44333321
Q ss_pred CCCCHHHHHHHHHHhhCCceEEEEEecCCCc--chHH
Q 041567 247 KDKDYEMKKINLGEYLMTKWYLIVLDDVWST--NVLD 281 (467)
Q Consensus 247 ~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~ 281 (467)
...+.+. +.+.+. +.=|||+||+... ..|+
T Consensus 149 ~~~~~~~----~l~~l~-~~dlLvIDDig~~~~s~~~ 180 (244)
T PRK07952 149 SETSEEQ----LLNDLS-NVDLLVIDEIGVQTESRYE 180 (244)
T ss_pred ccccHHH----HHHHhc-cCCEEEEeCCCCCCCCHHH
Confidence 1112222 223344 3458899999654 4454
No 100
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.20 E-value=0.0022 Score=60.08 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=61.9
Q ss_pred HHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCc----cceEEEEEcCCCCCHHHHHHHHHHhhCCCCc-ccc--
Q 041567 173 DLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHY----FDHLAWIPAPYHYDAYQILDIVTMFLLPFSM-LSK-- 245 (467)
Q Consensus 173 ~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~-~~~-- 245 (467)
+.|..+=..-.++.|+|.+|+|||+|+.+++........ -..++|++....++...+.+++...+..... .+.
T Consensus 10 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~ 89 (235)
T cd01123 10 ELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIY 89 (235)
T ss_pred hhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEE
Confidence 334333345689999999999999999999753222221 3578999998888776665666554432110 000
Q ss_pred -CCCCCH---HHHHHHHHHhhC-C-ceEEEEEecCC
Q 041567 246 -IKDKDY---EMKKINLGEYLM-T-KWYLIVLDDVW 275 (467)
Q Consensus 246 -~~~~~~---~~~~~~l~~~L~-~-kr~LlVlDdv~ 275 (467)
....+. ......+...+. . +.-|||+|.+.
T Consensus 90 ~~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 90 VARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred EEecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 011122 233344444443 3 67799999984
No 101
>PRK07261 topology modulation protein; Provisional
Probab=97.19 E-value=0.00086 Score=59.71 Aligned_cols=67 Identities=16% Similarity=0.270 Sum_probs=42.8
Q ss_pred EEEEECCCCChHHHHHHHHhcCcccc-CccceEEEEEcCCCCCHHHHHHHHHHhhCCCCccccCCCCCHHHHHHHHHHhh
Q 041567 184 VVAILNSIGLDKTAFTAEAYNSSYVK-HYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLSKIKDKDYEMKKINLGEYL 262 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 262 (467)
.|.|+|++|+||||||+.+.....+. -+.|...|-.- ....+.++....+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-------------------------~~~~~~~~~~~~~~~~~ 56 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-------------------------WQERDDDDMIADISNFL 56 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-------------------------cccCCHHHHHHHHHHHH
Confidence 48899999999999999987632111 13344445211 12234566777777777
Q ss_pred CCceEEEEEecCCCc
Q 041567 263 MTKWYLIVLDDVWST 277 (467)
Q Consensus 263 ~~kr~LlVlDdv~~~ 277 (467)
.+.+ .|+|.....
T Consensus 57 ~~~~--wIidg~~~~ 69 (171)
T PRK07261 57 LKHD--WIIDGNYSW 69 (171)
T ss_pred hCCC--EEEcCcchh
Confidence 7666 677877443
No 102
>PRK09087 hypothetical protein; Validated
Probab=97.19 E-value=0.0019 Score=60.16 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=21.4
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.+.+.|+|..|+|||+|++.+++.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999999999998874
No 103
>PRK06921 hypothetical protein; Provisional
Probab=97.18 E-value=0.0023 Score=61.18 Aligned_cols=37 Identities=22% Similarity=0.190 Sum_probs=28.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCc-cceEEEEEc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHY-FDHLAWIPA 220 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~v 220 (467)
..-+.++|..|+|||.||..+++ .+... -..+++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEEH
Confidence 56788999999999999999998 44433 344566654
No 104
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.17 E-value=0.0015 Score=64.67 Aligned_cols=105 Identities=11% Similarity=-0.039 Sum_probs=62.2
Q ss_pred HHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCcc-ce-EEEEEcCCCC-CHHHHH-HHHHHhhCCCCcc
Q 041567 168 MEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYF-DH-LAWIPAPYHY-DAYQIL-DIVTMFLLPFSML 243 (467)
Q Consensus 168 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~-~~wv~v~~~~-~~~~~~-~il~~l~~~~~~~ 243 (467)
..++++.+..-.. ...+.|+|.+|+|||||++.+.+ .+.... +. ++|+.+++.. .+.++. .++..+.......
T Consensus 120 ~~RvID~l~PiGk-GQR~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 120 SMRVVDLVAPIGK-GQRGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred hHhhhhheeecCC-CceEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCC
Confidence 3457777765432 34668999999999999999888 333322 33 4677776654 567777 8877666533100
Q ss_pred ccCCCCCHHHHHHHHHHhh--CCceEEEEEecCC
Q 041567 244 SKIKDKDYEMKKINLGEYL--MTKWYLIVLDDVW 275 (467)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~ 275 (467)
..............+.+.+ ++++.+||+|++.
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 0000011111122222222 5799999999993
No 105
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.17 E-value=0.0022 Score=70.40 Aligned_cols=116 Identities=11% Similarity=0.170 Sum_probs=66.3
Q ss_pred CCccccchhHHHHHHHHHhcC-------CCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH
Q 041567 158 NRNTVGLDDRMEELLDLLIEG-------PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL 230 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 230 (467)
...++|-+..++.+.+.+... +....++.++|++|+|||+||+.+.. .. +...+.++.++-.+..
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~--~l---~~~~~~~d~se~~~~~--- 524 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE--AL---GVHLERFDMSEYMEKH--- 524 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH--Hh---cCCeEEEeCchhhhcc---
Confidence 456889888888888887632 22355789999999999999999988 33 2234555554421111
Q ss_pred HHHHHhhCCCCccccCCCCCHHHHHHHHHHhhCC-ceEEEEEecCCCc--chHHHHHHhhc
Q 041567 231 DIVTMFLLPFSMLSKIKDKDYEMKKINLGEYLMT-KWYLIVLDDVWST--NVLDVVREILL 288 (467)
Q Consensus 231 ~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~~--~~~~~l~~~l~ 288 (467)
.+...++.+.. ....+. ...+.+.++. ...+|+||++... +.++.+...+.
T Consensus 525 ~~~~lig~~~g----yvg~~~---~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 525 TVSRLIGAPPG----YVGFEQ---GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMD 578 (731)
T ss_pred cHHHHhcCCCC----Ccccch---hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhc
Confidence 11111222111 111111 1122333333 3469999999754 55666666554
No 106
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.16 E-value=0.00026 Score=63.40 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=24.4
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEE
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIP 219 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 219 (467)
..-+.++|.+|+|||.||..+.+. -+...+ .+.|++
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~-~~~~g~-~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANE-AIRKGY-SVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHH-HHHTT---EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHH-hccCCc-ceeEee
Confidence 456889999999999999999884 222233 355664
No 107
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.16 E-value=0.003 Score=63.23 Aligned_cols=115 Identities=15% Similarity=0.080 Sum_probs=78.4
Q ss_pred CCCCccccchhHHHHHHHHHhcC--CCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HH
Q 041567 156 SKNRNTVGLDDRMEELLDLLIEG--PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DI 232 (467)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~i 232 (467)
..+..++||+.++..+.+++... .+...-+-|.|.+|.|||.+...++.+..-...=..+++++...-.....++ .|
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 56788999999999999998764 3456678899999999999999999853221111345666655545667777 88
Q ss_pred HHHhhCCCCccccCCCCCHHHHHHHHHHhhCC--ceEEEEEecCC
Q 041567 233 VTMFLLPFSMLSKIKDKDYEMKKINLGEYLMT--KWYLIVLDDVW 275 (467)
Q Consensus 233 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~--kr~LlVlDdv~ 275 (467)
...+..... ......+....+.+...+ ..+|+|||..+
T Consensus 227 ~~~~~q~~~-----s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD 266 (529)
T KOG2227|consen 227 FSSLLQDLV-----SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMD 266 (529)
T ss_pred HHHHHHHhc-----CCchhHHHHHHHHHHHhcccceEEEEechhh
Confidence 887733221 111124455566666554 36899999874
No 108
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.15 E-value=0.0028 Score=58.81 Aligned_cols=118 Identities=13% Similarity=0.179 Sum_probs=64.5
Q ss_pred cccc-hhHHHHHHHHHhcC-CCCcEEEEEECCCCChHHHHHHHHhcCccccCccc--eEEEEEcCCCCCHHHHH-HHHHH
Q 041567 161 TVGL-DDRMEELLDLLIEG-PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFD--HLAWIPAPYHYDAYQIL-DIVTM 235 (467)
Q Consensus 161 ~vGr-~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~v~~~~~~~~~~-~il~~ 235 (467)
++|- .+..-.....+... +.....+.|+|..|+|||.|.+.+++ +..+..+ .+++++ ..++. .+...
T Consensus 11 v~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~~------~~~f~~~~~~~ 82 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYLS------AEEFIREFADA 82 (219)
T ss_dssp --TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEEE------HHHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceeec------HHHHHHHHHHH
Confidence 3564 23333444444443 33455688999999999999999999 4443322 355653 44555 55555
Q ss_pred hhCCCCccccCCCCCHHHHHHHHHHhhCCceEEEEEecCCCc---chHHH-HHHhhcC-CCCCcEEEEecCc
Q 041567 236 FLLPFSMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWST---NVLDV-VREILLD-NQNGSRVLITLTR 302 (467)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~iivT~TR 302 (467)
+.... ...++..+.+ -=+|++||+... ..|+. +...+.. ...|.++|+| ++
T Consensus 83 ~~~~~--------------~~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~t-s~ 138 (219)
T PF00308_consen 83 LRDGE--------------IEEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILT-SD 138 (219)
T ss_dssp HHTTS--------------HHHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEE-ES
T ss_pred HHccc--------------chhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEE-eC
Confidence 54311 2234444443 347899999653 22322 2222211 1346689999 53
No 109
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.15 E-value=0.0017 Score=72.14 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=37.9
Q ss_pred CccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 159 RNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..++||+.++.++++.|.... ..-+.++|.+|+|||++|..+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHH
Confidence 459999999999999997754 334558999999999999999873
No 110
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.13 E-value=0.0015 Score=65.99 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=38.2
Q ss_pred CCCCccccchhHHHHHHHHHhcC-----------CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 156 SKNRNTVGLDDRMEELLDLLIEG-----------PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+.-.++.|.+..+++|.+.+... -...+-+.++|++|.|||+||+.+++
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~ 201 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAH 201 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 33456889999999888766421 12456788999999999999999998
No 111
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.12 E-value=0.00077 Score=73.92 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=37.4
Q ss_pred CccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 159 RNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..++||+++++.+++.|.... ..-+.++|.+|+|||++|+.+++
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~ 225 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLAL 225 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 468999999999999887653 33456899999999999999987
No 112
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=97.12 E-value=0.0015 Score=61.71 Aligned_cols=105 Identities=17% Similarity=0.181 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCCCcCCChHHHHHHHHHHHHHhH
Q 041567 4 KFRLFSERLRRVLAGEEVTLPDAAKQPIHNLHAEIEIVTSWLSEFEDDMSWLLLQKKGKDEIDNPDLATVMDEINCFTCE 83 (467)
Q Consensus 4 ~v~~l~~kl~~~l~~~e~~~~~~~~~~~~~L~~~L~~i~~~l~~a~~~~~~~~~~~~~~~~~~~~~v~~Wl~~l~~~ayd 83 (467)
-|..++++|-++. ......+.-++..++-++++++++|.||+..-+. .+......+.+..++.+.||+
T Consensus 297 yVdFlL~NLkdfq-~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee-----------~~nkh~~~ed~a~~ii~kAye 364 (402)
T PF12061_consen 297 YVDFLLKNLKDFQ-GRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEE-----------PHNKHDTNEDCATQIIRKAYE 364 (402)
T ss_pred HHHHHHhhHHHHh-ccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhc-----------cchhhhhhhhHHHHHHHHHhh
Confidence 4778999999999 8888888899999999999999999999998541 233334489999999999999
Q ss_pred HHHHHHHhHhhhhccccCCCcccchhhhHHHHHHHHHHHHHHHH
Q 041567 84 FEKVIDTFINSITQQKSQSSCRKDICDALQGLQSRITEINQRVQ 127 (467)
Q Consensus 84 ~ed~ld~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~l~~~l~ 127 (467)
+|.++|.|....... ++....+..+..+|..++++++
T Consensus 365 vEYVVDaCi~k~~P~-------Wcl~~WL~dIieei~~ik~~i~ 401 (402)
T PF12061_consen 365 VEYVVDACISKSVPH-------WCLERWLLDIIEEITCIKAKIQ 401 (402)
T ss_pred eeeeeehhhcCCCcH-------HHHHHHHHHHHHHHHHHHHHhc
Confidence 999999986544321 1112222367777777777665
No 113
>PRK09183 transposase/IS protein; Provisional
Probab=97.11 E-value=0.002 Score=61.43 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=20.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+.|+|++|+|||+||..+.+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 34677999999999999999977
No 114
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.11 E-value=0.0074 Score=64.21 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=38.3
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|-+..++.|.+.+..+. -...+.++|..|+||||+|+.+.+
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak 60 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAK 60 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999887653 345678999999999999999877
No 115
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.11 E-value=0.0023 Score=62.47 Aligned_cols=116 Identities=14% Similarity=0.156 Sum_probs=64.3
Q ss_pred cchhHHHHHHHHHhcCC--CCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHhhCC
Q 041567 163 GLDDRMEELLDLLIEGP--NQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMFLLP 239 (467)
Q Consensus 163 Gr~~~~~~l~~~L~~~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l~~~ 239 (467)
++........+++..-. ...+-+.++|..|+|||.||..+++. ....=..+.+++++ .++ .+.......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~~------~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHFP------EFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEHH------HHHHHHHHHHhcC
Confidence 45555555556665321 13457889999999999999999994 33322334555543 444 544443211
Q ss_pred CCccccCCCCCHHHHHHHHHHhhCCceEEEEEecCCCc--chHHH--HHHhh-cCC-CCCcEEEEecCc
Q 041567 240 FSMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWST--NVLDV--VREIL-LDN-QNGSRVLITLTR 302 (467)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~--l~~~l-~~~-~~gs~iivT~TR 302 (467)
+..+ .+.. + .+-=||||||+..+ ..|.. +...+ ... ..+-.+|+| |.
T Consensus 207 ----------~~~~---~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~T-SN 259 (306)
T PRK08939 207 ----------SVKE---KIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFT-SN 259 (306)
T ss_pred ----------cHHH---HHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEE-CC
Confidence 1122 2222 2 24568999999644 45643 44433 211 234557777 54
No 116
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.11 E-value=0.006 Score=68.10 Aligned_cols=121 Identities=15% Similarity=0.237 Sum_probs=67.5
Q ss_pred CCccccchhHHHHHHHHHhcC-------CCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH
Q 041567 158 NRNTVGLDDRMEELLDLLIEG-------PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL 230 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 230 (467)
...++|.+..++.+.+.+... +....++.++|++|+|||++|+.+.. .....-...+.++.+.-.+ ..
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~--~l~~~~~~~i~~d~s~~~~-~~-- 638 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE--FLFDDEDAMVRIDMSEYME-KH-- 638 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH--HhcCCCCcEEEEechhhcc-cc--
Confidence 356899999999999988642 12356788999999999999999987 2322222334444443211 11
Q ss_pred HHHHHhhCCCCccccCCCCCHHHHHHHHHHhhCCceEEEEEecCCCc--chHHHHHHhhcC
Q 041567 231 DIVTMFLLPFSMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWST--NVLDVVREILLD 289 (467)
Q Consensus 231 ~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~ 289 (467)
....-++.+.. ...-.....+...++. ....+|+||++... +.++.+...+..
T Consensus 639 ~~~~l~g~~~g---~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~ 693 (852)
T TIGR03346 639 SVARLIGAPPG---YVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDD 693 (852)
T ss_pred hHHHhcCCCCC---ccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhc
Confidence 11111121111 0111111222222222 23358999999754 566777776643
No 117
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.10 E-value=0.0034 Score=58.55 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=29.3
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 162 VGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 162 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.|..+........+.........+.|+|..|+|||+||+.+++.
T Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 22 AGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred cCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 35544443333333222233567889999999999999999984
No 118
>PRK06526 transposase; Provisional
Probab=97.09 E-value=0.001 Score=63.15 Aligned_cols=24 Identities=21% Similarity=0.081 Sum_probs=20.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..-+.++|++|+|||+||..+.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHH
Confidence 346889999999999999999873
No 119
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.09 E-value=0.00093 Score=63.40 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=27.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPA 220 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 220 (467)
+..-+.++|.+|+|||.||..+.+. +...=-.+.++++
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~~ 141 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFITA 141 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEEH
Confidence 4567889999999999999999994 4433234555543
No 120
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.08 E-value=0.014 Score=64.50 Aligned_cols=53 Identities=19% Similarity=0.351 Sum_probs=40.8
Q ss_pred CCccccchhHHHHHHHHHhc----CCCCcEEEEEECCCCChHHHHHHHHhcCccccCcc
Q 041567 158 NRNTVGLDDRMEELLDLLIE----GPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYF 212 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 212 (467)
+.+++|.++.++.|.+++.. .....+++.++|++|+|||++|+.+.+ .....|
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~--~l~~~~ 375 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK--ALNRKF 375 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH--HhcCCe
Confidence 45588999999999887642 222345899999999999999999998 444444
No 121
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.08 E-value=0.016 Score=63.66 Aligned_cols=55 Identities=13% Similarity=0.232 Sum_probs=43.3
Q ss_pred CCCCccccchhHHHHHHHHHhcC----CCCcEEEEEECCCCChHHHHHHHHhcCccccCcc
Q 041567 156 SKNRNTVGLDDRMEELLDLLIEG----PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYF 212 (467)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 212 (467)
.-+.+.+|.++.+++|+++|... .....++.++|++|+||||+|+.+.. .....|
T Consensus 319 ~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~ 377 (784)
T PRK10787 319 ILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKY 377 (784)
T ss_pred HhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCE
Confidence 44567999999999999888631 23456899999999999999999997 444444
No 122
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.08 E-value=0.0015 Score=72.39 Aligned_cols=44 Identities=20% Similarity=0.328 Sum_probs=37.6
Q ss_pred CccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 159 RNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..++||+.++.+++..|.... ..-+.++|.+|+||||+|..+.+
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~ 230 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLAL 230 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHH
Confidence 468999999999999887653 33456999999999999999987
No 123
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.07 E-value=0.0059 Score=66.99 Aligned_cols=31 Identities=16% Similarity=0.285 Sum_probs=25.0
Q ss_pred cCCChHHHHHHHHHHHHHhHHHHHHHHhHhh
Q 041567 64 EIDNPDLATVMDEINCFTCEFEKVIDTFINS 94 (467)
Q Consensus 64 ~~~~~~v~~Wl~~l~~~ayd~ed~ld~~~~~ 94 (467)
...++.+..+-++++.+-.++.+.++.+...
T Consensus 142 d~aS~~L~~ir~~~~~~~~~i~~~l~~~~~~ 172 (771)
T TIGR01069 142 DGASEELDAIRESLKALEEEVVKRLHKIIRS 172 (771)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466788899999999999998888887653
No 124
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.06 E-value=0.0025 Score=70.75 Aligned_cols=47 Identities=17% Similarity=0.279 Sum_probs=38.4
Q ss_pred CCccccchhHHHHHHHHHhc-------CCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 158 NRNTVGLDDRMEELLDLLIE-------GPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...++|-+..++.+.+.+.. ++....++.++|++|+|||.||+.+..
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~ 618 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE 618 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999988753 123456899999999999999988876
No 125
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.05 E-value=0.0028 Score=62.02 Aligned_cols=106 Identities=15% Similarity=0.183 Sum_probs=65.1
Q ss_pred HHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccC----ccceEEEEEcCCCCCHHHHHHHHHHhhCCCCc-cc
Q 041567 170 ELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKH----YFDHLAWIPAPYHYDAYQILDIVTMFLLPFSM-LS 244 (467)
Q Consensus 170 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~-~~ 244 (467)
.|-++|..+=....++-|+|.+|+|||+|+..++-...... .=..++||+....|+..++.+++..++..... .+
T Consensus 84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~ 163 (313)
T TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLD 163 (313)
T ss_pred HHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcC
Confidence 34444544434568999999999999999988764222211 12368999999999999888777777653210 00
Q ss_pred c---CCCCCHHHHH---HHHHHhhC-CceEEEEEecCC
Q 041567 245 K---IKDKDYEMKK---INLGEYLM-TKWYLIVLDDVW 275 (467)
Q Consensus 245 ~---~~~~~~~~~~---~~l~~~L~-~kr~LlVlDdv~ 275 (467)
+ ....+.++.. ..+...+. ++--|||+|.+-
T Consensus 164 ~i~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 164 NILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred cEEEecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 0 1112333333 33333443 355689999984
No 126
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.05 E-value=0.009 Score=63.26 Aligned_cols=47 Identities=13% Similarity=0.029 Sum_probs=37.7
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
-.+++|-+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+.
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~ 61 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKA 61 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHh
Confidence 3467898888888888887542 3467889999999999999999873
No 127
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.04 E-value=0.004 Score=64.45 Aligned_cols=119 Identities=16% Similarity=0.229 Sum_probs=62.6
Q ss_pred cccchhH--HHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccc--eEEEEEcCCCCCHHHHH-HHHHH
Q 041567 161 TVGLDDR--MEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFD--HLAWIPAPYHYDAYQIL-DIVTM 235 (467)
Q Consensus 161 ~vGr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~v~~~~~~~~~~-~il~~ 235 (467)
++|.... ......+....+....-+.|+|.+|+|||+|++.+.+ ++...++ .+++++. .++. .+...
T Consensus 125 v~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~------~~~~~~~~~~ 196 (450)
T PRK00149 125 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTS------EKFTNDFVNA 196 (450)
T ss_pred ccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHH
Confidence 4564433 2333333333233346688999999999999999999 5554442 3455543 3344 44444
Q ss_pred hhCCCCccccCCCCCHHHHHHHHHHhhCCceEEEEEecCCCc---c-hHHHHHHhhcC-CCCCcEEEEecCcc
Q 041567 236 FLLPFSMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWST---N-VLDVVREILLD-NQNGSRVLITLTRI 303 (467)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~---~-~~~~l~~~l~~-~~~gs~iivT~TR~ 303 (467)
+... ..+ .+.+.++ +.-+|+|||+... + ..+.+...+.. -..|..+|+| +..
T Consensus 197 ~~~~----------~~~----~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiit-s~~ 253 (450)
T PRK00149 197 LRNN----------TME----EFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLT-SDR 253 (450)
T ss_pred HHcC----------cHH----HHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEE-CCC
Confidence 4321 112 2233333 2448999999642 1 12233332211 1124558888 654
No 128
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.03 E-value=0.0032 Score=58.29 Aligned_cols=99 Identities=16% Similarity=0.085 Sum_probs=55.6
Q ss_pred HHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHh----hCCCCccc
Q 041567 170 ELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMF----LLPFSMLS 244 (467)
Q Consensus 170 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l----~~~~~~~~ 244 (467)
.|-++|..+=....++.|.|.+|+||||||.+++. .....=..++|++....+. +-+ +++... ....-
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~--~~~~~g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~--- 79 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAV--ETAGQGKKVAYIDTEGLSS--ERFRQIAGDRPERAASSII--- 79 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEE---
Confidence 34444443334578999999999999999999887 3323334577888766554 333 444331 11000
Q ss_pred cCCCCCHHH---HHHHHHHhhCCceEEEEEecCC
Q 041567 245 KIKDKDYEM---KKINLGEYLMTKWYLIVLDDVW 275 (467)
Q Consensus 245 ~~~~~~~~~---~~~~l~~~L~~kr~LlVlDdv~ 275 (467)
-....+..+ ....+...+..+.-++|+|.+-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvvIDsi~ 113 (218)
T cd01394 80 VFEPMDFNEQGRAIQETETFADEKVDLVVVDSAT 113 (218)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhcCCcEEEEechH
Confidence 001122222 2334444454456688999874
No 129
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.03 E-value=0.0032 Score=64.70 Aligned_cols=98 Identities=8% Similarity=0.150 Sum_probs=54.5
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHhhCCCCccccCCCCCHHHHHHHHHH
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMFLLPFSMLSKIKDKDYEMKKINLGE 260 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l~~~~~~~~~~~~~~~~~~~~~l~~ 260 (467)
..-+.|+|..|+|||+|++.+.+ .+...-..+++++ ...+. .+...+... . ...++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~--~l~~~~~~v~yi~------~~~f~~~~~~~l~~~----------~----~~~f~~ 198 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVH--ALRESGGKILYVR------SELFTEHLVSAIRSG----------E----MQRFRQ 198 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHH--HHHHcCCCEEEee------HHHHHHHHHHHHhcc----------h----HHHHHH
Confidence 45688999999999999999998 4433223345554 23444 555444321 1 122344
Q ss_pred hhCCceEEEEEecCCCcc----hHHHHHHhhcC-CCCCcEEEEecCcc
Q 041567 261 YLMTKWYLIVLDDVWSTN----VLDVVREILLD-NQNGSRVLITLTRI 303 (467)
Q Consensus 261 ~L~~kr~LlVlDdv~~~~----~~~~l~~~l~~-~~~gs~iivT~TR~ 303 (467)
.+. +.-+|++||+.... ..+.+...+.. ...|..||+| |..
T Consensus 199 ~~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlt-s~~ 244 (445)
T PRK12422 199 FYR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVIS-STC 244 (445)
T ss_pred Hcc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEe-cCC
Confidence 333 34488889985431 11233332210 1135678888 644
No 130
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.00 E-value=0.012 Score=62.31 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=39.1
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 157 KNRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.-.+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAk 60 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAK 60 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999988754 345677899999999999998876
No 131
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.00 E-value=0.011 Score=63.25 Aligned_cols=46 Identities=13% Similarity=0.081 Sum_probs=38.2
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|-+..++.|.+.+..+. -...+.++|+.|+||||+|+.+..
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk 61 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAK 61 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999987653 345688999999999999988776
No 132
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.00 E-value=0.0034 Score=54.64 Aligned_cols=40 Identities=8% Similarity=0.150 Sum_probs=30.2
Q ss_pred EEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCC
Q 041567 184 VVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYD 225 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~ 225 (467)
++.|+|.+|+||||++..+.. .....-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLAL--NIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHH--HHHhcCCEEEEEECCcchH
Confidence 468999999999999999987 3333345677888766543
No 133
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.96 E-value=0.0038 Score=63.69 Aligned_cols=98 Identities=16% Similarity=0.196 Sum_probs=55.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccc--eEEEEEcCCCCCHHHHH-HHHHHhhCCCCccccCCCCCHHHHHHHH
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFD--HLAWIPAPYHYDAYQIL-DIVTMFLLPFSMLSKIKDKDYEMKKINL 258 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~v~~~~~~~~~~-~il~~l~~~~~~~~~~~~~~~~~~~~~l 258 (467)
...+.|+|..|+|||+|++.+++ ++....+ .+++++ ..++. .+...+... ..+..
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~----------~~~~~---- 193 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYVS------SEKFTNDFVNALRNN----------KMEEF---- 193 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEEE------HHHHHHHHHHHHHcC----------CHHHH----
Confidence 45688999999999999999998 4443332 345654 33445 555555421 12222
Q ss_pred HHhhCCceEEEEEecCCCc---chH-HHHHHhhcC-CCCCcEEEEecCcc
Q 041567 259 GEYLMTKWYLIVLDDVWST---NVL-DVVREILLD-NQNGSRVLITLTRI 303 (467)
Q Consensus 259 ~~~L~~kr~LlVlDdv~~~---~~~-~~l~~~l~~-~~~gs~iivT~TR~ 303 (467)
.+.+.+ .-+|+|||+... +.+ +.+...+.. ...|..+|+| +..
T Consensus 194 ~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiit-s~~ 241 (405)
T TIGR00362 194 KEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLT-SDR 241 (405)
T ss_pred HHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEe-cCC
Confidence 233322 348899999643 111 223332221 1234568888 653
No 134
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.96 E-value=0.01 Score=61.20 Aligned_cols=46 Identities=15% Similarity=0.036 Sum_probs=38.2
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|.+..++.|.+.+..+. -...+.++|..|+||||+|+.+.+
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk 61 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAK 61 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHH
Confidence 3578999999999999887653 245678999999999999998876
No 135
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.96 E-value=0.006 Score=62.89 Aligned_cols=101 Identities=14% Similarity=0.237 Sum_probs=57.7
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCcc--ceEEEEEcCCCCCHHHHH-HHHHHhhCCCCccccCCCCCHHHHHHHH
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYF--DHLAWIPAPYHYDAYQIL-DIVTMFLLPFSMLSKIKDKDYEMKKINL 258 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~v~~~~~~~~~~-~il~~l~~~~~~~~~~~~~~~~~~~~~l 258 (467)
..-+.|+|..|+|||+|++.+.+ .+.... ..+++++ ..++. .+...+.... .....+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~------------~~~~~~ 200 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYMS------GDEFARKAVDILQKTH------------KEIEQF 200 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh------------hHHHHH
Confidence 45688999999999999999998 333222 2334443 34566 6666665311 122334
Q ss_pred HHhhCCceEEEEEecCCCc---chH-HHHHHhhcC-CCCCcEEEEecCccc
Q 041567 259 GEYLMTKWYLIVLDDVWST---NVL-DVVREILLD-NQNGSRVLITLTRIK 304 (467)
Q Consensus 259 ~~~L~~kr~LlVlDdv~~~---~~~-~~l~~~l~~-~~~gs~iivT~TR~~ 304 (467)
++.+. +.-+||+||+... ..+ +.+...+.. ...|..||+| +...
T Consensus 201 ~~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIlt-sd~~ 249 (450)
T PRK14087 201 KNEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFS-SDKS 249 (450)
T ss_pred HHHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEE-CCCC
Confidence 44443 3448899999643 222 333333321 1234578888 6543
No 136
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.96 E-value=0.001 Score=65.56 Aligned_cols=50 Identities=10% Similarity=0.282 Sum_probs=42.0
Q ss_pred CCCCccccchhHHHHHHHHHhcC----CCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 156 SKNRNTVGLDDRMEELLDLLIEG----PNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.-..+++|.++.++++++++... +...+++.++|++|+||||||..+.+.
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 33447999999999999998653 335689999999999999999999884
No 137
>PHA00729 NTP-binding motif containing protein
Probab=96.95 E-value=0.0036 Score=57.78 Aligned_cols=32 Identities=13% Similarity=0.221 Sum_probs=24.8
Q ss_pred HHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 171 LLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 171 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+++.+... ....|.|.|.+|+||||||..+.+
T Consensus 8 ~~~~l~~~--~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 8 IVSAYNNN--GFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHHHhcC--CeEEEEEECCCCCCHHHHHHHHHH
Confidence 34444433 356789999999999999999988
No 138
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.95 E-value=0.0091 Score=66.51 Aligned_cols=47 Identities=15% Similarity=0.305 Sum_probs=37.8
Q ss_pred CCccccchhHHHHHHHHHhcC-------CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 158 NRNTVGLDDRMEELLDLLIEG-------PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...++|-+..++.+...+... +.+..++.++|+.|+|||+||+.+.+
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 456899999999988887532 22345788999999999999999987
No 139
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.94 E-value=0.0076 Score=57.31 Aligned_cols=172 Identities=16% Similarity=0.078 Sum_probs=95.5
Q ss_pred CCCCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEE-EEcCCCCCHHHHHHHHH
Q 041567 156 SKNRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAW-IPAPYHYDAYQILDIVT 234 (467)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~w-v~v~~~~~~~~~~~il~ 234 (467)
..-.+++|-+..++-|.+.+... ..++...+|++|.|||+-|..+...---.+.|++++- .++|..-...-+-.
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~~--~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~--- 107 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLRR--ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVRE--- 107 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhhc--CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhh---
Confidence 34467899999999999988873 4889999999999999988887763222455665443 34443321110000
Q ss_pred HhhCCCCccccCCCCCHHHHHHHHHHhhC--Cce-EEEEEecCCCc--chHHHHHHhhcCCCCCcEE-EEecCccccccc
Q 041567 235 MFLLPFSMLSKIKDKDYEMKKINLGEYLM--TKW-YLIVLDDVWST--NVLDVVREILLDNQNGSRV-LITLTRIKMVTR 308 (467)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr-~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~i-ivT~TR~~~v~~ 308 (467)
...+...+......... -++ -.+|||++..- +.|..++..+-+.+..++- +|| +--..+..
T Consensus 108 ------------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIc-nylsrii~ 174 (346)
T KOG0989|consen 108 ------------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILIC-NYLSRIIR 174 (346)
T ss_pred ------------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEc-CChhhCCh
Confidence 00000000000000000 123 36789999754 7899998888765655554 455 33332222
Q ss_pred -----cc---cccc--------------ccCCCChHHHHHHHHHHcCC-ChHHHHHHHhc
Q 041567 309 -----FQ---FENG--------------ESVRLDLVPTGGPLRVTYQG-WPFLILYHGSI 345 (467)
Q Consensus 309 -----~~---F~~~--------------~~~~~~~~~~~~~i~~~c~G-lPLai~~i~~~ 345 (467)
|. |..- .+..+-..+..+.|++.++| |--|+.++-++
T Consensus 175 pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsl 234 (346)
T KOG0989|consen 175 PLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSL 234 (346)
T ss_pred HHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 22 4332 12233334556777777776 44455555544
No 140
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.94 E-value=0.002 Score=71.81 Aligned_cols=45 Identities=16% Similarity=0.266 Sum_probs=37.4
Q ss_pred CccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 159 RNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..++||+.++.+++..|.... ..-+.++|.+|+|||++|..+.+.
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHH
Confidence 459999999999999997754 334458999999999999998873
No 141
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.94 E-value=0.012 Score=63.30 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=38.2
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|-+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk 62 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFAN 62 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence 3568999999999999887653 345678999999999999999876
No 142
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.93 E-value=0.0062 Score=58.16 Aligned_cols=98 Identities=14% Similarity=0.006 Sum_probs=65.0
Q ss_pred HhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHH-hhCCCCccccCCCCCHHH
Q 041567 175 LIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTM-FLLPFSMLSKIKDKDYEM 253 (467)
Q Consensus 175 L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~-l~~~~~~~~~~~~~~~~~ 253 (467)
|-.+=+..+++=|+|+.|.||||+|.+++- ..+..-..++|++.-+.+++..+.++... +.. ....+........+
T Consensus 53 LGGGl~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~-l~v~~~~~~e~q~~ 129 (279)
T COG0468 53 LGGGLPRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAKQLGVDLLDN-LLVSQPDTGEQQLE 129 (279)
T ss_pred hcCCcccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcc-eeEecCCCHHHHHH
Confidence 333335678999999999999999999887 44555558999999999999888766666 322 11000112222333
Q ss_pred HHHHHHHhhCCceEEEEEecCC
Q 041567 254 KKINLGEYLMTKWYLIVLDDVW 275 (467)
Q Consensus 254 ~~~~l~~~L~~kr~LlVlDdv~ 275 (467)
++..+......+--|+|+|.+-
T Consensus 130 i~~~~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 130 IAEKLARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHHHHHHhccCCCCEEEEecCc
Confidence 4444555444456799999985
No 143
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.93 E-value=0.00058 Score=56.79 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 041567 184 VVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+|.|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999988
No 144
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.92 E-value=0.006 Score=60.29 Aligned_cols=107 Identities=16% Similarity=0.140 Sum_probs=66.4
Q ss_pred HHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccC----ccceEEEEEcCCCCCHHHHHHHHHHhhCCCCc-c
Q 041567 169 EELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKH----YFDHLAWIPAPYHYDAYQILDIVTMFLLPFSM-L 243 (467)
Q Consensus 169 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~-~ 243 (467)
..|-++|..+=....++-|+|.+|+|||+|+..++-...... .-..++|++....|+..++.+|++.++..... .
T Consensus 110 ~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l 189 (342)
T PLN03186 110 RELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVL 189 (342)
T ss_pred HHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhc
Confidence 344445554434578999999999999999988774322211 11268999999999999888888877643210 0
Q ss_pred c---cCCCCCHHHHHHHHH---Hhh-CCceEEEEEecCC
Q 041567 244 S---KIKDKDYEMKKINLG---EYL-MTKWYLIVLDDVW 275 (467)
Q Consensus 244 ~---~~~~~~~~~~~~~l~---~~L-~~kr~LlVlDdv~ 275 (467)
+ -....+.+.....+. ..+ ..+--|||+|.+-
T Consensus 190 ~~i~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~ 228 (342)
T PLN03186 190 ENVAYARAYNTDHQSELLLEAASMMAETRFALMIVDSAT 228 (342)
T ss_pred cceEEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcH
Confidence 0 011233444433333 223 3456699999984
No 145
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.92 E-value=0.0032 Score=65.37 Aligned_cols=47 Identities=23% Similarity=0.232 Sum_probs=37.2
Q ss_pred CccccchhHHHHHHHHHhcC-----------CCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 159 RNTVGLDDRMEELLDLLIEG-----------PNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.++.|.+..+++|.+.+... -...+-+.++|++|.|||++|+.+++.
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 55788999999988876421 123456889999999999999999993
No 146
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.91 E-value=0.0023 Score=60.90 Aligned_cols=106 Identities=23% Similarity=0.176 Sum_probs=62.6
Q ss_pred HHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccC----ccceEEEEEcCCCCCHHHHHHHHHHhhCCCCc-cc
Q 041567 170 ELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKH----YFDHLAWIPAPYHYDAYQILDIVTMFLLPFSM-LS 244 (467)
Q Consensus 170 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~-~~ 244 (467)
.|-++|..+=....+.=|+|.+|+|||.|+..++-...+.. .=..++|++-...|+...+.+|++........ .+
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~ 105 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILD 105 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhh
Confidence 44444533323457999999999999999988765322222 12358999999999998888888765432100 00
Q ss_pred ---cCCCCCHHHHHHH---HHHhh-CCceEEEEEecCC
Q 041567 245 ---KIKDKDYEMKKIN---LGEYL-MTKWYLIVLDDVW 275 (467)
Q Consensus 245 ---~~~~~~~~~~~~~---l~~~L-~~kr~LlVlDdv~ 275 (467)
-....+.+++... +...+ .++--|||+|.+-
T Consensus 106 ~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 106 NIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp TEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred ceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchH
Confidence 0112233343333 33333 3455699999983
No 147
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.90 E-value=0.015 Score=61.49 Aligned_cols=47 Identities=15% Similarity=0.039 Sum_probs=39.4
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
-.+++|-+..++.|...+..+. -...+.++|+.|+||||+|+.+.+.
T Consensus 15 f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~ 61 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARC 61 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999997653 3456889999999999999999873
No 148
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.0055 Score=65.97 Aligned_cols=118 Identities=19% Similarity=0.246 Sum_probs=72.2
Q ss_pred CCccccchhHHHHHHHHHhcC-------CCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH
Q 041567 158 NRNTVGLDDRMEELLDLLIEG-------PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL 230 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 230 (467)
...++|-+..++.+.+.+... +.+..+...+|+.|||||.||+.+.. ..-+.=+..+- +|+.+..
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~--~Lfg~e~aliR------~DMSEy~ 561 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE--ALFGDEQALIR------IDMSEYM 561 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH--HhcCCCcccee------echHHHH
Confidence 467899999999999887532 34577888999999999999998876 22110022222 2455554
Q ss_pred --HHHHHh-hCCCCccccCCCCCHHHHHHHHHHhhCCceE-EEEEecCCCc--chHHHHHHhhcCC
Q 041567 231 --DIVTMF-LLPFSMLSKIKDKDYEMKKINLGEYLMTKWY-LIVLDDVWST--NVLDVVREILLDN 290 (467)
Q Consensus 231 --~il~~l-~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~-LlVlDdv~~~--~~~~~l~~~l~~~ 290 (467)
.-+..| +.+.. .-.-+ + --.|-+..+.++| +|.||.+... +..+-+...|.++
T Consensus 562 EkHsVSrLIGaPPG----YVGye--e-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 562 EKHSVSRLIGAPPG----YVGYE--E-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HHHHHHHHhCCCCC----Cceec--c-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 223333 33221 11111 1 2334555666777 7789999754 5666666766643
No 149
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.88 E-value=0.0031 Score=67.15 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=41.6
Q ss_pred CCCCCccccchhHHHHHHHHHhcCC---CCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 155 SSKNRNTVGLDDRMEELLDLLIEGP---NQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 155 ~~~~~~~vGr~~~~~~l~~~L~~~~---~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
|..-.+++|-++.++++..+|.... ....++.|+|++|+||||+++.+...
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3445679999999999999987542 23467999999999999999999973
No 150
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.88 E-value=0.021 Score=50.34 Aligned_cols=118 Identities=14% Similarity=0.171 Sum_probs=69.6
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCc---ccc---------------CccceEEEEEcCCCC
Q 041567 163 GLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSS---YVK---------------HYFDHLAWIPAPYHY 224 (467)
Q Consensus 163 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~~~---------------~~F~~~~wv~v~~~~ 224 (467)
|-++..+.|.+.+..+. -...+.++|..|+||+++|..+.+.- ... ...+...|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~- 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK- 78 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS-
T ss_pred CcHHHHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc-
Confidence 34556666666666543 34567899999999999998886621 101 11222334432221
Q ss_pred CHHHHHHHHHHhhCCCCccccCCCCCHHHHHHHHHHhhC-----CceEEEEEecCCC--cchHHHHHHhhcCCCCCcEEE
Q 041567 225 DAYQILDIVTMFLLPFSMLSKIKDKDYEMKKINLGEYLM-----TKWYLIVLDDVWS--TNVLDVVREILLDNQNGSRVL 297 (467)
Q Consensus 225 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~-----~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~ii 297 (467)
......++.. .+.+.+. ++.=.+|+||+.. .+.++.++..+-....++.+|
T Consensus 79 ---------------------~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 79 ---------------------KKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp ---------------------SSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred ---------------------cchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 0122333333 3444332 3456889999975 367888888888888889988
Q ss_pred EecCcccc
Q 041567 298 ITLTRIKM 305 (467)
Q Consensus 298 vT~TR~~~ 305 (467)
++ |++..
T Consensus 137 L~-t~~~~ 143 (162)
T PF13177_consen 137 LI-TNNPS 143 (162)
T ss_dssp EE-ES-GG
T ss_pred EE-ECChH
Confidence 88 66543
No 151
>PRK06696 uridine kinase; Validated
Probab=96.88 E-value=0.0014 Score=61.02 Aligned_cols=42 Identities=21% Similarity=0.196 Sum_probs=34.8
Q ss_pred cchhHHHHHHHHHhc-CCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 163 GLDDRMEELLDLLIE-GPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 163 Gr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.|.+.+++|.+.+.. ......+|+|.|.+|+||||||+.+..
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 366778888888764 234678999999999999999999987
No 152
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.88 E-value=0.012 Score=65.54 Aligned_cols=133 Identities=13% Similarity=0.214 Sum_probs=73.3
Q ss_pred CCccccchhHHHHHHHHHhcC-------CCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH
Q 041567 158 NRNTVGLDDRMEELLDLLIEG-------PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL 230 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 230 (467)
...++|-+..++.+.+.+... +.+...+.++|+.|+|||+||+.+.+ .+-..-...+-++.+.-.+..
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~--~l~~~~~~~~~~d~s~~~~~~--- 582 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS--YFFGSEDAMIRLDMSEYMEKH--- 582 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH--HhcCCccceEEEEchhccccc---
Confidence 366899999999998877532 22345678999999999999999887 221111223344444322111
Q ss_pred HHHHHhhCCCCccccCCCCCHHHHHHHHHHhhCCce-EEEEEecCCCc--chHHHHHHhhcCC-----------CCCcEE
Q 041567 231 DIVTMFLLPFSMLSKIKDKDYEMKKINLGEYLMTKW-YLIVLDDVWST--NVLDVVREILLDN-----------QNGSRV 296 (467)
Q Consensus 231 ~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr-~LlVlDdv~~~--~~~~~l~~~l~~~-----------~~gs~i 296 (467)
.+..-++.+.. ...-.... .+.+.++.++ .+++||++... +.++.+...+..+ -..+-+
T Consensus 583 ~~~~l~g~~~g---yvg~~~~~----~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~ 655 (821)
T CHL00095 583 TVSKLIGSPPG---YVGYNEGG----QLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLI 655 (821)
T ss_pred cHHHhcCCCCc---ccCcCccc----hHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEE
Confidence 11111121110 01111112 2334444444 58889999754 5666666665542 134556
Q ss_pred EEecCcc
Q 041567 297 LITLTRI 303 (467)
Q Consensus 297 ivT~TR~ 303 (467)
|+| |..
T Consensus 656 I~T-sn~ 661 (821)
T CHL00095 656 IMT-SNL 661 (821)
T ss_pred EEe-CCc
Confidence 777 654
No 153
>PRK04296 thymidine kinase; Provisional
Probab=96.83 E-value=0.003 Score=57.23 Aligned_cols=113 Identities=12% Similarity=-0.067 Sum_probs=63.8
Q ss_pred EEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHhhCCCCccccCCCCCHHHHHHHHHHh
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMFLLPFSMLSKIKDKDYEMKKINLGEY 261 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (467)
.++.|+|..|.||||+|..+.. +...+-..++.+. ..++..... .++.+++..... .......++...+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~---~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREA---IPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe--ccccccccCCcEecCCCCcccc---eEeCChHHHHHHHHh-
Confidence 5788999999999999988887 4433333344442 222323334 555555532210 111234555555555
Q ss_pred hCCceEEEEEecCCCc--chHHHHHHhhcCCCCCcEEEEecCccccc
Q 041567 262 LMTKWYLIVLDDVWST--NVLDVVREILLDNQNGSRVLITLTRIKMV 306 (467)
Q Consensus 262 L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivT~TR~~~v 306 (467)
..++.-+||+|.+.-- ++...+...+ ...|..||+| .++.+.
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~t-gl~~~~ 118 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICY-GLDTDF 118 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEE-ecCccc
Confidence 3345568999998532 2233333332 2457889999 666443
No 154
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.83 E-value=0.018 Score=60.13 Aligned_cols=46 Identities=13% Similarity=-0.042 Sum_probs=37.8
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|-+..++.|...+..+. -...+.++|..|+||||+|+.+.+
T Consensus 13 fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk 58 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFAR 58 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHH
Confidence 3568999999999999887653 345678999999999999998776
No 155
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.83 E-value=0.0082 Score=59.08 Aligned_cols=106 Identities=15% Similarity=0.138 Sum_probs=64.1
Q ss_pred HHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCcc----ceEEEEEcCCCCCHHHHHHHHHHhhCCCCc-cc
Q 041567 170 ELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYF----DHLAWIPAPYHYDAYQILDIVTMFLLPFSM-LS 244 (467)
Q Consensus 170 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F----~~~~wv~v~~~~~~~~~~~il~~l~~~~~~-~~ 244 (467)
.+-++|..+=....++-|+|.+|+|||+|+.+++-.......+ ..++||+....|+...+.+++..++..... .+
T Consensus 90 ~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~ 169 (317)
T PRK04301 90 ELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLD 169 (317)
T ss_pred HHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhc
Confidence 3334444433457899999999999999999887632221111 378999999999988877766666542110 00
Q ss_pred c---CCCCC---HHHHHHHHHHhhCC--ceEEEEEecCC
Q 041567 245 K---IKDKD---YEMKKINLGEYLMT--KWYLIVLDDVW 275 (467)
Q Consensus 245 ~---~~~~~---~~~~~~~l~~~L~~--kr~LlVlDdv~ 275 (467)
. ....+ ...+...+...+.. +--|||+|.+-
T Consensus 170 ~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSis 208 (317)
T PRK04301 170 NIHVARAYNSDHQMLLAEKAEELIKEGENIKLVIVDSLT 208 (317)
T ss_pred cEEEEeCCCHHHHHHHHHHHHHHHhccCceeEEEEECch
Confidence 0 01111 12334455555543 34589999874
No 156
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.82 E-value=0.058 Score=51.52 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH
Q 041567 167 RMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL 230 (467)
Q Consensus 167 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 230 (467)
-++.+..++..+ .-|.+.|.+|+|||+||+.+.+ ..... .+.++.....+..+++
T Consensus 10 l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~--~lg~~---~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 10 VTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVAR--KRDRP---VMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHH--HhCCC---EEEEeCCccCCHHHHh
Confidence 344555555543 3456899999999999999987 33322 3455666665555554
No 157
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.81 E-value=0.0012 Score=62.09 Aligned_cols=53 Identities=19% Similarity=0.195 Sum_probs=42.8
Q ss_pred CCccccchhHHHHHHHHHhcC---CCCcEEEEEECCCCChHHHHHHHHhcCccccCcc
Q 041567 158 NRNTVGLDDRMEELLDLLIEG---PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYF 212 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 212 (467)
-.+|+|-++.++++.=++... +..+-.+.++|++|.||||||.-+.+ +....+
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn~ 80 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIAN--ELGVNL 80 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCCe
Confidence 457999999999888777643 45678899999999999999999999 454443
No 158
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.79 E-value=0.0081 Score=52.43 Aligned_cols=118 Identities=11% Similarity=0.076 Sum_probs=62.3
Q ss_pred EEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEc---CCCCCHHHHH-HHHHHhhCC-CCccccCCCCCH------
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPA---PYHYDAYQIL-DIVTMFLLP-FSMLSKIKDKDY------ 251 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v---~~~~~~~~~~-~il~~l~~~-~~~~~~~~~~~~------ 251 (467)
..|-|++..|.||||+|....- +...+=..+.++.+ ........++ .+ ..+... ......+...+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4678888899999999987766 32222223334333 2233333333 32 111100 000000000111
Q ss_pred -HHHHHHHHHhhCC-ceEEEEEecCCCc-----chHHHHHHhhcCCCCCcEEEEecCccc
Q 041567 252 -EMKKINLGEYLMT-KWYLIVLDDVWST-----NVLDVVREILLDNQNGSRVLITLTRIK 304 (467)
Q Consensus 252 -~~~~~~l~~~L~~-kr~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iivT~TR~~ 304 (467)
.+..+..++.+.. +-=|||||++-.. -..+.+...+.....+.-+|+| .|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlT-Gr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLT-GRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEE-CCCC
Confidence 1223334444544 4459999998533 3556677777666677899999 8765
No 159
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.79 E-value=0.014 Score=57.33 Aligned_cols=119 Identities=10% Similarity=0.130 Sum_probs=71.8
Q ss_pred ccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccC---------------------ccceEEEE
Q 041567 160 NTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKH---------------------YFDHLAWI 218 (467)
Q Consensus 160 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------------------~F~~~~wv 218 (467)
.++|-+....++..+..........+.++|++|+||||+|..+.+. +-. ..+.+..+
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel 79 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKE--LLCENPTGLLPCGHCRSCKLIPAGNHPDFLEL 79 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHH--HhCCCcccCCcccchhhhhHHhhcCCCceEEe
Confidence 4677788888888888755433445999999999999999988873 221 11334444
Q ss_pred EcCCCCCH---HHHH-HHHHHhhCCCCccccCCCCCHHHHHHHHHHhhCCceEEEEEecCCCc--chHHHHHHhhcCCCC
Q 041567 219 PAPYHYDA---YQIL-DIVTMFLLPFSMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWST--NVLDVVREILLDNQN 292 (467)
Q Consensus 219 ~v~~~~~~---~~~~-~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~ 292 (467)
+.+..... .+.. ++.+...... ..++.-++++|++..- +.-..++..+-....
T Consensus 80 ~~s~~~~~~i~~~~vr~~~~~~~~~~---------------------~~~~~kviiidead~mt~~A~nallk~lEep~~ 138 (325)
T COG0470 80 NPSDLRKIDIIVEQVRELAEFLSESP---------------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPK 138 (325)
T ss_pred cccccCCCcchHHHHHHHHHHhccCC---------------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCC
Confidence 44433221 1111 2111111100 0256778999999643 445566666666666
Q ss_pred CcEEEEecCc
Q 041567 293 GSRVLITLTR 302 (467)
Q Consensus 293 gs~iivT~TR 302 (467)
.+.+|++ |.
T Consensus 139 ~~~~il~-~n 147 (325)
T COG0470 139 NTRFILI-TN 147 (325)
T ss_pred CeEEEEE-cC
Confidence 7888877 66
No 160
>PRK07667 uridine kinase; Provisional
Probab=96.77 E-value=0.0028 Score=57.65 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 168 MEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 168 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+.|.+.+........+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4667777776665678999999999999999999987
No 161
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.75 E-value=0.048 Score=53.77 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=21.6
Q ss_pred CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 179 PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 179 ~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+.-...+.++|+.|+||||+|..+..
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~ 44 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAA 44 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHH
Confidence 33456788999999999999988876
No 162
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.75 E-value=0.0052 Score=67.09 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=37.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 159 RNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..++||++++.++++.|.... ..-+.++|.+|+|||++|+.+++
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 358999999999999888753 23345899999999999999987
No 163
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.73 E-value=0.013 Score=53.81 Aligned_cols=105 Identities=13% Similarity=0.068 Sum_probs=66.1
Q ss_pred CCCCccccchhHHHHHHHHHhc--CCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHH
Q 041567 156 SKNRNTVGLDDRMEELLDLLIE--GPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIV 233 (467)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il 233 (467)
++-..++|.|..++.|++--.. .+....-|.+||.-|.|||+|++++.+ ++....... |.|+++
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glrL--VEV~k~---------- 122 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLRL--VEVDKE---------- 122 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCeE--EEEcHH----------
Confidence 4556789999999888863321 122355678999999999999999998 555554432 222221
Q ss_pred HHhhCCCCccccCCCCCHHHHHHHHHHhhCCceEEEEEecCCCc---chHHHHHHhhcC
Q 041567 234 TMFLLPFSMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWST---NVLDVVREILLD 289 (467)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~ 289 (467)
+-.+...+...|+. ..+||.|..||+.-+ +.+..++..+..
T Consensus 123 -------------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG 166 (287)
T COG2607 123 -------------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEG 166 (287)
T ss_pred -------------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcC
Confidence 11112222222222 257999999999633 567777777653
No 164
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.72 E-value=0.0059 Score=64.37 Aligned_cols=98 Identities=8% Similarity=0.166 Sum_probs=54.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCcc--ceEEEEEcCCCCCHHHHH-HHHHHhhCCCCccccCCCCCHHHHHHHH
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYF--DHLAWIPAPYHYDAYQIL-DIVTMFLLPFSMLSKIKDKDYEMKKINL 258 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~v~~~~~~~~~~-~il~~l~~~~~~~~~~~~~~~~~~~~~l 258 (467)
...+.|+|..|.|||.|++.+++ .....+ -.+++++ ..++. ++...+... . ...+
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yit------aeef~~el~~al~~~----------~----~~~f 371 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYVS------SEEFTNEFINSIRDG----------K----GDSF 371 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEee------HHHHHHHHHHHHHhc----------c----HHHH
Confidence 44589999999999999999999 444332 2345554 34444 544443321 1 1223
Q ss_pred HHhhCCceEEEEEecCCCc---chHH-HHHHhhcC-CCCCcEEEEecCcc
Q 041567 259 GEYLMTKWYLIVLDDVWST---NVLD-VVREILLD-NQNGSRVLITLTRI 303 (467)
Q Consensus 259 ~~~L~~kr~LlVlDdv~~~---~~~~-~l~~~l~~-~~~gs~iivT~TR~ 303 (467)
++.+.. -=+|||||+... +.|+ .+...+.. ...|..|||| |+.
T Consensus 372 ~~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIIT-Sd~ 419 (617)
T PRK14086 372 RRRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLS-SDR 419 (617)
T ss_pred HHHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEe-cCC
Confidence 333332 347889999643 2232 22222221 1235568888 765
No 165
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.72 E-value=0.0044 Score=56.55 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=58.1
Q ss_pred EEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCccccCCCCCHHHHHHHHHHhh
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLSKIKDKDYEMKKINLGEYL 262 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 262 (467)
.+|.|+|+.|+||||++..+.. ....+....+++--. +.. -...-...+-...+ ...+.......++..|
T Consensus 2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t~e~-~~E--~~~~~~~~~i~q~~-----vg~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHILTIED-PIE--FVHESKRSLINQRE-----VGLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEEEcC-Ccc--ccccCccceeeecc-----cCCCccCHHHHHHHHh
Confidence 4789999999999999998877 333333444443221 110 00100000000000 0111233556677777
Q ss_pred CCceEEEEEecCCCcchHHHHHHhhcCCCCCcEEEEe
Q 041567 263 MTKWYLIVLDDVWSTNVLDVVREILLDNQNGSRVLIT 299 (467)
Q Consensus 263 ~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivT 299 (467)
...+=.+++|.+.+.+.+..+.... ..|..++.|
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t 105 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTAA---ETGHLVMST 105 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEE
Confidence 7777899999998777665544433 235667777
No 166
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.71 E-value=0.0073 Score=63.28 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=35.3
Q ss_pred CCCccccchhHHHHHHHHHh---cC-------CCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 157 KNRNTVGLDDRMEELLDLLI---EG-------PNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.-.+++|.++.++++.+.+. .. ....+-+.++|++|.|||+||+.+++.
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 34568898887776665443 21 123445889999999999999999983
No 167
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.71 E-value=0.02 Score=61.34 Aligned_cols=134 Identities=13% Similarity=0.135 Sum_probs=72.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccC-ccceEEEEEcCCCCCHHHHH-HHHHHh
Q 041567 159 RNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKH-YFDHLAWIPAPYHYDAYQIL-DIVTMF 236 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~wv~v~~~~~~~~~~-~il~~l 236 (467)
.+++|.+..++.|..++..+. -...+.++|..|+||||+|+.+++. +-. ..+.. ....+...... .+....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~--L~c~~~~~~----~~~~Cg~C~~C~~i~~g~ 88 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKS--LNCLNSDKP----TPEPCGKCELCRAIAAGN 88 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHH--hcCCCcCCC----CCCCCcccHHHHHHhcCC
Confidence 568999999999999888653 2356789999999999999999873 211 11000 01112222222 222222
Q ss_pred hCCCCccccCCCCCHHHHHHHHHHh----hCCceEEEEEecCCCc--chHHHHHHhhcCCCCCcEEEEe
Q 041567 237 LLPFSMLSKIKDKDYEMKKINLGEY----LMTKWYLIVLDDVWST--NVLDVVREILLDNQNGSRVLIT 299 (467)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivT 299 (467)
....-..........+.+.+.+... ..+++-++|+|++..- ..++.|+..+-.....+.+|++
T Consensus 89 h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~ 157 (620)
T PRK14948 89 ALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLA 157 (620)
T ss_pred CccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEE
Confidence 2110000000112223332222211 1245568899999743 5677787777665555655554
No 168
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.69 E-value=0.013 Score=58.00 Aligned_cols=105 Identities=17% Similarity=0.191 Sum_probs=65.0
Q ss_pred HHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCcccc----CccceEEEEEcCCCCCHHHHHHHHHHhhCCCCc-cc-
Q 041567 171 LLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVK----HYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSM-LS- 244 (467)
Q Consensus 171 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~-~~- 244 (467)
|-++|..+=....++-|+|.+|+|||+|+..++-..... ..-..++||+....|+..++.+++..++..... .+
T Consensus 115 LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~ 194 (344)
T PLN03187 115 LDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDN 194 (344)
T ss_pred HHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCe
Confidence 334444433456889999999999999998886422221 112468999999999999988888877653210 00
Q ss_pred --cCCCCCHHHHHHH---HHHhhC-CceEEEEEecCC
Q 041567 245 --KIKDKDYEMKKIN---LGEYLM-TKWYLIVLDDVW 275 (467)
Q Consensus 245 --~~~~~~~~~~~~~---l~~~L~-~kr~LlVlDdv~ 275 (467)
-....+.+++... +...+. .+--|||+|.+-
T Consensus 195 I~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 195 IIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 1122334443333 333332 345689999984
No 169
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.014 Score=59.29 Aligned_cols=107 Identities=19% Similarity=0.176 Sum_probs=67.5
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCccccCCCCCHHHHHHHHH
Q 041567 180 NQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLSKIKDKDYEMKKINLG 259 (467)
Q Consensus 180 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~ 259 (467)
.++..+.+.|++|+|||+||..+.. ...|+.+=-++.. +.-..+.......++
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe-----------------------~miG~sEsaKc~~i~ 588 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPE-----------------------DMIGLSESAKCAHIK 588 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChH-----------------------HccCccHHHHHHHHH
Confidence 4677888999999999999999987 5678765444321 223445555566666
Q ss_pred HhhC----CceEEEEEecCCCcchHH------------HHHHhhcC-CCCCcEE--EEecCccccccc-cc----cccc
Q 041567 260 EYLM----TKWYLIVLDDVWSTNVLD------------VVREILLD-NQNGSRV--LITLTRIKMVTR-FQ----FENG 314 (467)
Q Consensus 260 ~~L~----~kr~LlVlDdv~~~~~~~------------~l~~~l~~-~~~gs~i--ivT~TR~~~v~~-~~----F~~~ 314 (467)
+.+. ..--.||+||+...-+|- .+.-.+.. ..+|-|. +-| |....+.. |+ |...
T Consensus 589 k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~T-TS~~~vL~~m~i~~~F~~~ 666 (744)
T KOG0741|consen 589 KIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGT-TSRREVLQEMGILDCFSST 666 (744)
T ss_pred HHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEec-ccHHHHHHHcCHHHhhhhe
Confidence 6553 456789999996544443 23223322 2234454 446 76677777 76 6654
No 170
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.69 E-value=0.013 Score=52.43 Aligned_cols=120 Identities=13% Similarity=0.066 Sum_probs=63.8
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEE---cCCCCCHHH------HH-HHHHHhhCCCCccccCCCCC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIP---APYHYDAYQ------IL-DIVTMFLLPFSMLSKIKDKD 250 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~---v~~~~~~~~------~~-~il~~l~~~~~~~~~~~~~~ 250 (467)
+-.+++|+|..|.|||||.+.+... . ......+++. +.. .+... .. +++..++............+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~--~-~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGL--L-KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC--C-CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 3569999999999999999999873 2 2334444442 221 12211 22 34555543221111122233
Q ss_pred HHH-HHHHHHHhhCCceEEEEEecCCCc---chHHHHHHhhcCC-CC-CcEEEEecCcccc
Q 041567 251 YEM-KKINLGEYLMTKWYLIVLDDVWST---NVLDVVREILLDN-QN-GSRVLITLTRIKM 305 (467)
Q Consensus 251 ~~~-~~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~~-~~-gs~iivT~TR~~~ 305 (467)
..+ ..-.+...+...+-+++||+--.. ...+.+...+..- .. |..||++ |.+..
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~-sh~~~ 159 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMV-LHDLN 159 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHH
Confidence 322 233455566677889999987543 3334444433321 12 5667777 65543
No 171
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.68 E-value=0.0028 Score=56.61 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=29.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEE
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIP 219 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 219 (467)
...+|.+.|+.|+||||+|+.+++ +....+...++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 456999999999999999999998 5555566666653
No 172
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.68 E-value=0.047 Score=57.49 Aligned_cols=134 Identities=16% Similarity=0.070 Sum_probs=85.3
Q ss_pred CCCccccchhHHHHHHHHHhcC---CCCcEEEEEECCCCChHHHHHHHHhcCcc---c---cCccceEEEEEcCCCCCHH
Q 041567 157 KNRNTVGLDDRMEELLDLLIEG---PNQLSVVAILNSIGLDKTAFTAEAYNSSY---V---KHYFDHLAWIPAPYHYDAY 227 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~---~~~F~~~~wv~v~~~~~~~ 227 (467)
.+..+-+|+.+..+|..++..- +.....+-|.|.+|.|||..+..|.+... - -..|+ .+.|+.-.-....
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~ 472 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPR 472 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHH
Confidence 4556789999999999988643 23345888999999999999999988311 1 12343 3455555556788
Q ss_pred HHH-HHHHHhhCCCCccccCCCCCHHHHHHHHHHhhC-----CceEEEEEecCCCcc--hHHHHHHhhc-CCCCCcEEEE
Q 041567 228 QIL-DIVTMFLLPFSMLSKIKDKDYEMKKINLGEYLM-----TKWYLIVLDDVWSTN--VLDVVREILL-DNQNGSRVLI 298 (467)
Q Consensus 228 ~~~-~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~-----~kr~LlVlDdv~~~~--~~~~l~~~l~-~~~~gs~iiv 298 (467)
++. .|..++.+..- ......+.|..++. .+.++|++|++...- .-+-+-..|. ...++||++|
T Consensus 473 ~~Y~~I~~~lsg~~~--------~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvv 544 (767)
T KOG1514|consen 473 EIYEKIWEALSGERV--------TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVV 544 (767)
T ss_pred HHHHHHHHhcccCcc--------cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEE
Confidence 999 99999987542 33344455555543 256888888874321 1111222222 2345777665
Q ss_pred e
Q 041567 299 T 299 (467)
Q Consensus 299 T 299 (467)
-
T Consensus 545 i 545 (767)
T KOG1514|consen 545 I 545 (767)
T ss_pred E
Confidence 4
No 173
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.66 E-value=0.0059 Score=67.14 Aligned_cols=46 Identities=17% Similarity=0.188 Sum_probs=36.6
Q ss_pred CccccchhHHHHHHHHHhcC-----------CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 159 RNTVGLDDRMEELLDLLIEG-----------PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+++.|.+..++.|.+++... -...+-+.++|++|+|||+||+.+++
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence 45789999999988876421 02345688999999999999999998
No 174
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.65 E-value=0.0027 Score=54.19 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=30.5
Q ss_pred EEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH
Q 041567 185 VAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL 230 (467)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 230 (467)
|.++|.+|+|||+||+.++. .... ...-+.++...+..+++
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~~---~~~~i~~~~~~~~~dl~ 42 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLGR---PVIRINCSSDTTEEDLI 42 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHTC---EEEEEE-TTTSTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhhc---ceEEEEeccccccccce
Confidence 57899999999999999998 3322 23346778878887777
No 175
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.65 E-value=0.0067 Score=59.25 Aligned_cols=99 Identities=17% Similarity=0.026 Sum_probs=58.3
Q ss_pred HHHHHh-cCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCccccCCCC
Q 041567 171 LLDLLI-EGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLSKIKDK 249 (467)
Q Consensus 171 l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~~~~~~ 249 (467)
|-.+|- .+=+.-+++-|+|.+|+||||||.++.. .....=..++|++..+.++.. .+.+++......--....
T Consensus 43 LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~--~~~~~g~~v~yId~E~~~~~~----~a~~lGvd~~~l~v~~p~ 116 (321)
T TIGR02012 43 LDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV----YARKLGVDIDNLLVSQPD 116 (321)
T ss_pred HHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEcccchhHHH----HHHHcCCCHHHeEEecCC
Confidence 334443 3334578999999999999999998876 333334567899877665543 222222211000001122
Q ss_pred CHHHHHHHHHHhhC-CceEEEEEecCC
Q 041567 250 DYEMKKINLGEYLM-TKWYLIVLDDVW 275 (467)
Q Consensus 250 ~~~~~~~~l~~~L~-~kr~LlVlDdv~ 275 (467)
+.++....+...++ +..-+||+|.|-
T Consensus 117 ~~eq~l~~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 117 TGEQALEIAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred CHHHHHHHHHHHhhccCCcEEEEcchh
Confidence 34555555555554 356799999984
No 176
>PRK06620 hypothetical protein; Validated
Probab=96.64 E-value=0.0045 Score=57.19 Aligned_cols=23 Identities=22% Similarity=-0.021 Sum_probs=20.8
Q ss_pred EEEEEECCCCChHHHHHHHHhcC
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
+.+.|+|++|+|||+|++.+.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc
Confidence 66899999999999999998874
No 177
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.63 E-value=0.013 Score=57.37 Aligned_cols=68 Identities=15% Similarity=0.175 Sum_probs=47.4
Q ss_pred HHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccC----ccceEEEEEcCCCCCHHHHHHHHHHhhC
Q 041567 171 LLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKH----YFDHLAWIPAPYHYDAYQILDIVTMFLL 238 (467)
Q Consensus 171 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~il~~l~~ 238 (467)
+-.+|..+=....++-|+|.+|+|||+|+.+++....... .=..++||+....|+...+.+++..++.
T Consensus 84 lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl 155 (310)
T TIGR02236 84 LDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGL 155 (310)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCC
Confidence 3344443324578999999999999999999876422211 1126899999998988877666666554
No 178
>CHL00176 ftsH cell division protein; Validated
Probab=96.63 E-value=0.0047 Score=66.14 Aligned_cols=50 Identities=16% Similarity=0.217 Sum_probs=35.8
Q ss_pred CCCCccccchhHHHHHHHHH---hcCC-------CCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 156 SKNRNTVGLDDRMEELLDLL---IEGP-------NQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L---~~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..-.++.|.++.++++.+.+ .... ...+-+.++|++|.|||+||+.+++.
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 33456889887777665544 3221 22456889999999999999999983
No 179
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.63 E-value=0.006 Score=58.05 Aligned_cols=92 Identities=11% Similarity=0.195 Sum_probs=52.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccc-eEEEEEcCCCCC-HHHHH-HHHHHhhCCCC-ccccCCCCCH-H----
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFD-HLAWIPAPYHYD-AYQIL-DIVTMFLLPFS-MLSKIKDKDY-E---- 252 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~~~~~-~~~~~-~il~~l~~~~~-~~~~~~~~~~-~---- 252 (467)
-+-++|.|.+|.|||||++.+++ .++.+|+ .++++-+++... ..++. .+...-..... ........+. .
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 46789999999999999999999 5555564 456666766554 33444 44432111000 0000011111 1
Q ss_pred -HHHHHHHHhh---CCceEEEEEecCC
Q 041567 253 -MKKINLGEYL---MTKWYLIVLDDVW 275 (467)
Q Consensus 253 -~~~~~l~~~L---~~kr~LlVlDdv~ 275 (467)
...-.+.+++ +++.+||++||+-
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChh
Confidence 1122244444 3899999999983
No 180
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.62 E-value=0.015 Score=56.93 Aligned_cols=45 Identities=11% Similarity=0.048 Sum_probs=37.4
Q ss_pred CccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 159 RNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+++|-+..++.+.+.+..+. -.....++|..|+||+++|..+.+
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~ 48 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIE 48 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 468899999999999887653 347899999999999998877765
No 181
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.58 E-value=0.0076 Score=58.92 Aligned_cols=99 Identities=18% Similarity=0.058 Sum_probs=58.8
Q ss_pred HHHHHh-cCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCccccCCCC
Q 041567 171 LLDLLI-EGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLSKIKDK 249 (467)
Q Consensus 171 l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~~~~~~ 249 (467)
|-.+|- .+=+.-+++-|+|++|+||||||.+++. .....-..++|++..+.++... +.+++......--....
T Consensus 43 LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~--~~~~~g~~~vyId~E~~~~~~~----a~~lGvd~~~l~v~~p~ 116 (325)
T cd00983 43 LDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIA--EAQKLGGTVAFIDAEHALDPVY----AKKLGVDLDNLLISQPD 116 (325)
T ss_pred HHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEECccccHHHHH----HHHcCCCHHHheecCCC
Confidence 334443 3334567999999999999999999876 3333445688998877666432 22222211000001122
Q ss_pred CHHHHHHHHHHhhCC-ceEEEEEecCC
Q 041567 250 DYEMKKINLGEYLMT-KWYLIVLDDVW 275 (467)
Q Consensus 250 ~~~~~~~~l~~~L~~-kr~LlVlDdv~ 275 (467)
+.++....+...++. ..-|||+|.|-
T Consensus 117 ~~eq~l~i~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 117 TGEQALEIADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred CHHHHHHHHHHHHhccCCCEEEEcchH
Confidence 445556666555543 56799999974
No 182
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.58 E-value=0.011 Score=53.85 Aligned_cols=54 Identities=17% Similarity=0.132 Sum_probs=36.4
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEE
Q 041567 162 VGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIP 219 (467)
Q Consensus 162 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 219 (467)
..+.......++.|.. ..++.+.|++|.|||.||....-+.-..+.|+..+++.
T Consensus 3 ~p~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 3 KPKNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp ---SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred cCCCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 3456666777777773 46999999999999999988876544457888877764
No 183
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.57 E-value=0.0025 Score=66.11 Aligned_cols=45 Identities=11% Similarity=0.315 Sum_probs=39.4
Q ss_pred ccccchhHHHHHHHHHhc----CCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 160 NTVGLDDRMEELLDLLIE----GPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 160 ~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+++|.++.+++|++.|.. -+..-+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 589999999999999832 244568999999999999999999987
No 184
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.57 E-value=0.0027 Score=54.31 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 041567 184 VVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999986
No 185
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.55 E-value=0.0064 Score=55.55 Aligned_cols=79 Identities=14% Similarity=0.065 Sum_probs=45.3
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCccccCCCCCHHHHHHHHHH
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLSKIKDKDYEMKKINLGE 260 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~ 260 (467)
++.+|+|.|.+|+||||+|+.++. ....++... ++...-+...+............. .....+.+-+.+.|..
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~~~~--I~~D~YYk~~~~~~~~~~~~~n~d---~p~A~D~dLl~~~L~~ 79 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSE--QLGVEKVVV--ISLDDYYKDQSHLPFEERNKINYD---HPEAFDLDLLIEHLKD 79 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH--HhCcCcceE--eeccccccchhhcCHhhcCCcCcc---ChhhhcHHHHHHHHHH
Confidence 468999999999999999999998 455442222 221111111111111111111111 2345667777888888
Q ss_pred hhCCce
Q 041567 261 YLMTKW 266 (467)
Q Consensus 261 ~L~~kr 266 (467)
.+++++
T Consensus 80 L~~g~~ 85 (218)
T COG0572 80 LKQGKP 85 (218)
T ss_pred HHcCCc
Confidence 888876
No 186
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0088 Score=61.76 Aligned_cols=93 Identities=16% Similarity=0.171 Sum_probs=63.3
Q ss_pred CccccchhHHHHHHHHHhcC---C-------CCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHH
Q 041567 159 RNTVGLDDRMEELLDLLIEG---P-------NQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQ 228 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~---~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 228 (467)
.++-|.+..+.++.+++..- + ...+=|.++|++|.|||.||+.+.+ +..-.| +.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAg--el~vPf-----~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAG--ELGVPF-----LSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhh--hcCCce-----Eeecch-----
Confidence 56778999999988877532 1 2456678999999999999999999 444333 333221
Q ss_pred HHHHHHHhhCCCCccccCCCCCHHHHHHHHHHhhCCceEEEEEecCC
Q 041567 229 ILDIVTMFLLPFSMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVW 275 (467)
Q Consensus 229 ~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~ 275 (467)
+|+... ...+.+.+.+...+.-..-++++++|++.
T Consensus 258 --eivSGv----------SGESEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 258 --EIVSGV----------SGESEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred --hhhccc----------CcccHHHHHHHHHHHhccCCeEEEeeccc
Confidence 233222 33344555555566666789999999996
No 187
>PRK09354 recA recombinase A; Provisional
Probab=96.55 E-value=0.0097 Score=58.69 Aligned_cols=100 Identities=19% Similarity=0.032 Sum_probs=60.2
Q ss_pred HHHHHHh-cCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCccccCCC
Q 041567 170 ELLDLLI-EGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLSKIKD 248 (467)
Q Consensus 170 ~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~~~~~ 248 (467)
.|-.+|- .+=+.-+++-|+|++|+||||||.+++. .....=..++||+....++... +.+++......-....
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~--~~~~~G~~~~yId~E~s~~~~~----a~~lGvdld~lli~qp 120 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPVY----AKKLGVDIDNLLVSQP 120 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEECCccchHHHH----HHHcCCCHHHeEEecC
Confidence 3444454 3334578999999999999999999886 3334445688998887776532 2222221000000112
Q ss_pred CCHHHHHHHHHHhhC-CceEEEEEecCC
Q 041567 249 KDYEMKKINLGEYLM-TKWYLIVLDDVW 275 (467)
Q Consensus 249 ~~~~~~~~~l~~~L~-~kr~LlVlDdv~ 275 (467)
.+.++....+...++ +..-|||+|.|-
T Consensus 121 ~~~Eq~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 121 DTGEQALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred CCHHHHHHHHHHHhhcCCCCEEEEeChh
Confidence 234555555555554 356799999985
No 188
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.55 E-value=0.14 Score=53.26 Aligned_cols=47 Identities=17% Similarity=0.091 Sum_probs=34.0
Q ss_pred CCccccchhHHHHHHHHHhc--------CCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 158 NRNTVGLDDRMEELLDLLIE--------GPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~--------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-+++.|.+..++.+.+.... +-...+-|.++|++|.|||.+|+.+.+
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~ 281 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAN 281 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 35678887777666543211 112356788999999999999999998
No 189
>PRK13695 putative NTPase; Provisional
Probab=96.54 E-value=0.0035 Score=55.90 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 041567 184 VVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998874
No 190
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.54 E-value=0.0062 Score=55.59 Aligned_cols=45 Identities=24% Similarity=0.230 Sum_probs=36.7
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.++||-++.++.+.-.-.+++ .+-+.|.||+|+||||-+..+++
T Consensus 26 l~dIVGNe~tv~rl~via~~gn--mP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKEGN--MPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHcCC--CCceEeeCCCCCchhhHHHHHHH
Confidence 3568999999998877666654 77888999999999997776666
No 191
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.52 E-value=0.019 Score=53.88 Aligned_cols=101 Identities=14% Similarity=0.035 Sum_probs=60.4
Q ss_pred HHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCc--------
Q 041567 171 LLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSM-------- 242 (467)
Q Consensus 171 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~-------- 242 (467)
|-+.|..+=+...++.|+|.+|+|||+|+.++... ..+ +=..++|++..+. ..++..-+.+++.....
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~-~~~-~g~~~~y~~~e~~--~~~~~~~~~~~g~~~~~~~~~g~l~ 89 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYG-ALK-QGKKVYVITTENT--SKSYLKQMESVKIDISDFFLWGYLR 89 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHH-HHh-CCCEEEEEEcCCC--HHHHHHHHHHCCCChhHHHhCCCce
Confidence 44444444345789999999999999999998652 122 2346788888654 34444223333321100
Q ss_pred -----c--ccCCCCCHHHHHHHHHHhhCC-ceEEEEEecCC
Q 041567 243 -----L--SKIKDKDYEMKKINLGEYLMT-KWYLIVLDDVW 275 (467)
Q Consensus 243 -----~--~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~ 275 (467)
+ ......+.+.+...+...+.. +.-++|+|.+.
T Consensus 90 i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 90 IFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred EEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0 001123446677777777764 56689999975
No 192
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.51 E-value=0.023 Score=62.50 Aligned_cols=47 Identities=17% Similarity=0.120 Sum_probs=35.8
Q ss_pred CCccccchhHHHHHHHHHhcC-----------CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 158 NRNTVGLDDRMEELLDLLIEG-----------PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.++.|.+..+++|.+.+.-. -...+-+.++|++|.|||+||+.+.+
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~ 509 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVAT 509 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 345788888888887766421 12345578999999999999999998
No 193
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=96.50 E-value=0.026 Score=62.15 Aligned_cols=155 Identities=15% Similarity=0.089 Sum_probs=75.1
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHhhCCCCccccCCCCCHHHHHHHHH
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMFLLPFSMLSKIKDKDYEMKKINLG 259 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l~~~~~~~~~~~~~~~~~~~~~l~ 259 (467)
..+++.|.|+.+.||||+.+.+.-.. + ......+|++.... .-.++ .|+..++....... ...+...-...+.
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~-~--maq~G~~vpa~~~~-~i~~~~~i~~~ig~~~si~~--~lStfS~~m~~~~ 399 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAA-L--MAKSGLPIPANEPS-EIPVFKEIFADIGDEQSIEQ--SLSTFSGHMTNIV 399 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHH-H--HHHhCCCcccCCCc-cccccceEEEecCCccchhh--chhHHHHHHHHHH
Confidence 45789999999999999988885320 0 01111122222100 00111 11111111111000 0011111122222
Q ss_pred HhhC--CceEEEEEecCCCcch---HHH----HHHhhcCCCCCcEEEEecCccccccc-cc-----------cccc----
Q 041567 260 EYLM--TKWYLIVLDDVWSTNV---LDV----VREILLDNQNGSRVLITLTRIKMVTR-FQ-----------FENG---- 314 (467)
Q Consensus 260 ~~L~--~kr~LlVlDdv~~~~~---~~~----l~~~l~~~~~gs~iivT~TR~~~v~~-~~-----------F~~~---- 314 (467)
..+. +.+-|+++|......+ -.. +...+. ..|+.+|+| |....+.. .. |...
T Consensus 400 ~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIit-TH~~el~~~~~~~~~v~~~~~~~d~~~l~~ 476 (782)
T PRK00409 400 RILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIAT-THYKELKALMYNREGVENASVEFDEETLRP 476 (782)
T ss_pred HHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEE-CChHHHHHHHhcCCCeEEEEEEEecCcCcE
Confidence 2222 4778999999875421 122 223332 247899999 99877665 22 3211
Q ss_pred ---ccCCCChHHHHHHHHHHcCCChHHHHHHHhc
Q 041567 315 ---ESVRLDLVPTGGPLRVTYQGWPFLILYHGSI 345 (467)
Q Consensus 315 ---~~~~~~~~~~~~~i~~~c~GlPLai~~i~~~ 345 (467)
......-...|-+|++++ |+|-.+.--|.-
T Consensus 477 ~Ykl~~G~~g~S~a~~iA~~~-Glp~~ii~~A~~ 509 (782)
T PRK00409 477 TYRLLIGIPGKSNAFEIAKRL-GLPENIIEEAKK 509 (782)
T ss_pred EEEEeeCCCCCcHHHHHHHHh-CcCHHHHHHHHH
Confidence 001111245677888877 788777666655
No 194
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.49 E-value=0.013 Score=54.68 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=23.5
Q ss_pred CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 179 PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 179 ~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+..+|+|.|.+|.|||||++.+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999999987
No 195
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.49 E-value=0.0064 Score=51.95 Aligned_cols=44 Identities=23% Similarity=0.137 Sum_probs=31.5
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 162 VGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 162 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
||.-..++++.+.+..-......|.|.|..|+||+++|+.++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 56667777777776543223456789999999999999999874
No 196
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.47 E-value=0.013 Score=64.00 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=37.4
Q ss_pred CccccchhHHHHHHHHHhcC-------CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 159 RNTVGLDDRMEELLDLLIEG-------PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..++|-++.++.|.+.+... +.....+.++|++|+|||+||+.+..
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~ 510 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHH
Confidence 45789999999888887631 23356789999999999999999987
No 197
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.46 E-value=0.016 Score=56.85 Aligned_cols=107 Identities=15% Similarity=0.138 Sum_probs=63.8
Q ss_pred HHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccC----ccceEEEEEcCCCCCHHHHHHHHHHhhCCCCc-c
Q 041567 169 EELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKH----YFDHLAWIPAPYHYDAYQILDIVTMFLLPFSM-L 243 (467)
Q Consensus 169 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~-~ 243 (467)
..|-++|..+=....++.|+|.+|+|||+|+..++....... .-..++|++....++..++.++++.++..... .
T Consensus 83 ~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l 162 (316)
T TIGR02239 83 KELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVL 162 (316)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhh
Confidence 344455554434578999999999999999998875222211 11357999998888888755777665542210 0
Q ss_pred c---cCCCCCHHHHH---HHHHHhhC-CceEEEEEecCC
Q 041567 244 S---KIKDKDYEMKK---INLGEYLM-TKWYLIVLDDVW 275 (467)
Q Consensus 244 ~---~~~~~~~~~~~---~~l~~~L~-~kr~LlVlDdv~ 275 (467)
+ -....+.++.. ..+...+. .+--|||+|.+-
T Consensus 163 ~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~ 201 (316)
T TIGR02239 163 DNVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSAT 201 (316)
T ss_pred ccEEEEecCChHHHHHHHHHHHHhhccCCccEEEEECcH
Confidence 0 00112333333 33333343 355689999984
No 198
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.45 E-value=0.0046 Score=63.11 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=38.9
Q ss_pred CccccchhHHHHHHHHHhcC-----------CCCcEEEEEECCCCChHHHHHHHHhcCccccCcc
Q 041567 159 RNTVGLDDRMEELLDLLIEG-----------PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYF 212 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 212 (467)
.++.|.+..+++|.+.+.-. -....-+.++|++|.|||++|+.+++ +....|
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f 245 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF 245 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE
Confidence 34678999999888876421 12345678999999999999999999 444444
No 199
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.011 Score=62.21 Aligned_cols=96 Identities=15% Similarity=0.106 Sum_probs=58.9
Q ss_pred CCCCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHH
Q 041567 156 SKNRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTM 235 (467)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~ 235 (467)
..+.+|+--...+++..+.....--..+-|.|.|..|+|||+||+.+++... +.+.-.+..|+.+.-
T Consensus 405 ~~e~d~i~~~s~kke~~n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l------------ 471 (952)
T KOG0735|consen 405 PFEHDFIQVPSYKKENANQELSPVFRHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTL------------ 471 (952)
T ss_pred cCCCceeecchhhhhhhhhhcccccccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhc------------
Confidence 3444555544444444444433333456788999999999999999998533 444445556665532
Q ss_pred hhCCCCccccCCCCCHHHHHHHHHH----hhCCceEEEEEecCC
Q 041567 236 FLLPFSMLSKIKDKDYEMKKINLGE----YLMTKWYLIVLDDVW 275 (467)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~~~~l~~----~L~~kr~LlVlDdv~ 275 (467)
.....+..+..+.. .+...+.+|||||+.
T Consensus 472 -----------~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 472 -----------DGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLD 504 (952)
T ss_pred -----------cchhHHHHHHHHHHHHHHHHhhCCcEEEEcchh
Confidence 12223344433333 445678999999995
No 200
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.38 E-value=0.013 Score=58.92 Aligned_cols=121 Identities=17% Similarity=0.166 Sum_probs=67.9
Q ss_pred CccccchhHHH-HHHHHHhc-CCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHH
Q 041567 159 RNTVGLDDRME-ELLDLLIE-GPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTM 235 (467)
Q Consensus 159 ~~~vGr~~~~~-~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~ 235 (467)
.-++|-..... .+...+.. .+.....+.|+|..|.|||.|++.+.+ ....+.+....+.++ ..... .++..
T Consensus 88 nFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~----se~f~~~~v~a 161 (408)
T COG0593 88 NFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT----SEDFTNDFVKA 161 (408)
T ss_pred heeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc----HHHHHHHHHHH
Confidence 33456443333 23333332 233578899999999999999999999 666666643333332 33444 44444
Q ss_pred hhCCCCccccCCCCCHHHHHHHHHHhhCCceEEEEEecCCCc---chH-HHH---HHhhcCCCCCcEEEEecCccc
Q 041567 236 FLLPFSMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWST---NVL-DVV---REILLDNQNGSRVLITLTRIK 304 (467)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~---~~~-~~l---~~~l~~~~~gs~iivT~TR~~ 304 (467)
+.. .-...+++.. .-=++++||++.- +.| +.+ ...+... |..||+| ++..
T Consensus 162 ~~~--------------~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~--~kqIvlt-sdr~ 218 (408)
T COG0593 162 LRD--------------NEMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLEN--GKQIVLT-SDRP 218 (408)
T ss_pred HHh--------------hhHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhc--CCEEEEE-cCCC
Confidence 442 1234455554 3348899999642 222 223 3333333 3489999 6543
No 201
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.31 E-value=0.017 Score=57.88 Aligned_cols=100 Identities=17% Similarity=0.109 Sum_probs=57.7
Q ss_pred HHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCccccCCC
Q 041567 169 EELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLSKIKD 248 (467)
Q Consensus 169 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~~~~~ 248 (467)
.++-+.|-.+=..-.++.|.|.+|+|||||+.+++.. ....-..++|++..+. ..++..-+..++...+...-...
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi~~Ra~rlg~~~~~l~l~~e 144 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQIKLRADRLGISTENLYLLAE 144 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHHHHHHHHcCCCcccEEEEcc
Confidence 4455555444334679999999999999999998863 3333346778876543 33333334445432211001122
Q ss_pred CCHHHHHHHHHHhhCCceEEEEEecCC
Q 041567 249 KDYEMKKINLGEYLMTKWYLIVLDDVW 275 (467)
Q Consensus 249 ~~~~~~~~~l~~~L~~kr~LlVlDdv~ 275 (467)
.+.+.+.+.+. ..+.-+||+|.+.
T Consensus 145 ~~le~I~~~i~---~~~~~lVVIDSIq 168 (372)
T cd01121 145 TNLEDILASIE---ELKPDLVIIDSIQ 168 (372)
T ss_pred CcHHHHHHHHH---hcCCcEEEEcchH
Confidence 34444444443 2366789999984
No 202
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.31 E-value=0.014 Score=52.95 Aligned_cols=83 Identities=14% Similarity=0.078 Sum_probs=46.0
Q ss_pred EEEEECCCCChHHHHHHHHhcCccccC-ccc---eEEEEEcCCCCCHHHHHHHHHHhhCCCCccccCCCCCHHHHHHHHH
Q 041567 184 VVAILNSIGLDKTAFTAEAYNSSYVKH-YFD---HLAWIPAPYHYDAYQILDIVTMFLLPFSMLSKIKDKDYEMKKINLG 259 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~---~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~ 259 (467)
||+|.|.+|+||||||+.+.. .... ... ....++.............-... ............+.+.+.+.|.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~--~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ--ILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRG-ENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--HHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHC-TTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH--HhCccCcCccceeEEEeecccccccchhhHhhcc-ccccCCCCccccCHHHHHHHHH
Confidence 799999999999999999987 3332 222 13333333222222222211111 1111111235567788888888
Q ss_pred HhhCCceEEE
Q 041567 260 EYLMTKWYLI 269 (467)
Q Consensus 260 ~~L~~kr~Ll 269 (467)
...+++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 8777766544
No 203
>PTZ00035 Rad51 protein; Provisional
Probab=96.31 E-value=0.04 Score=54.53 Aligned_cols=107 Identities=16% Similarity=0.144 Sum_probs=64.1
Q ss_pred HHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCcccc----CccceEEEEEcCCCCCHHHHHHHHHHhhCCCCc-c
Q 041567 169 EELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVK----HYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSM-L 243 (467)
Q Consensus 169 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~-~ 243 (467)
..|-++|..+=....++.|+|.+|+|||||+..++-..... ..=..++|++....|+..++.++++.++..... .
T Consensus 105 ~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l 184 (337)
T PTZ00035 105 TQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVL 184 (337)
T ss_pred HHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHh
Confidence 34444554443457899999999999999999887532211 112356799988888888766777766542110 0
Q ss_pred c---cCCCCCHHHHHHHH---HHhh-CCceEEEEEecCC
Q 041567 244 S---KIKDKDYEMKKINL---GEYL-MTKWYLIVLDDVW 275 (467)
Q Consensus 244 ~---~~~~~~~~~~~~~l---~~~L-~~kr~LlVlDdv~ 275 (467)
+ -....+.++....+ ...+ .++--|||+|.+.
T Consensus 185 ~nI~~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSit 223 (337)
T PTZ00035 185 DNIAYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSAT 223 (337)
T ss_pred hceEEEccCCHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 0 01122334444333 3333 3455699999984
No 204
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.27 E-value=0.0039 Score=53.73 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=20.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..-|.|.|++|+||||+++.+.+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHH
Confidence 45689999999999999999997
No 205
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.26 E-value=0.25 Score=51.34 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+|+|+|.+|+||||++..+..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999988876
No 206
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.25 E-value=0.028 Score=50.34 Aligned_cols=21 Identities=29% Similarity=0.265 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 041567 184 VVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+|.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 207
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.24 E-value=0.048 Score=53.92 Aligned_cols=43 Identities=9% Similarity=-0.068 Sum_probs=32.0
Q ss_pred ccc-chhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 161 TVG-LDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 161 ~vG-r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
++| -+..++.+.+.+..+. -...+.++|+.|+||||+|..+.+
T Consensus 7 i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~ 50 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAK 50 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 456 5556667777665543 356778999999999999988866
No 208
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.24 E-value=0.059 Score=51.55 Aligned_cols=131 Identities=14% Similarity=0.048 Sum_probs=68.1
Q ss_pred HHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHhhC--CCCcc
Q 041567 167 RMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMFLL--PFSML 243 (467)
Q Consensus 167 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l~~--~~~~~ 243 (467)
..+.++..|... ....-++|+|..|.|||||.+.+... +. .....+++.- ......+-. ++...... +...-
T Consensus 97 ~~~~~l~~l~~~-~~~~~~~i~g~~g~GKttl~~~l~~~--~~-~~~G~i~~~g-~~v~~~d~~~ei~~~~~~~~q~~~~ 171 (270)
T TIGR02858 97 AADKLLPYLVRN-NRVLNTLIISPPQCGKTTLLRDLARI--LS-TGISQLGLRG-KKVGIVDERSEIAGCVNGVPQHDVG 171 (270)
T ss_pred cHHHHHHHHHhC-CCeeEEEEEcCCCCCHHHHHHHHhCc--cC-CCCceEEECC-EEeecchhHHHHHHHhccccccccc
Confidence 344455555533 23578999999999999999999973 32 2233333321 111111111 22222211 10000
Q ss_pred ccCCCCCHHHHHHHHHHhhC-CceEEEEEecCCCcchHHHHHHhhcCCCCCcEEEEecCccccc
Q 041567 244 SKIKDKDYEMKKINLGEYLM-TKWYLIVLDDVWSTNVLDVVREILLDNQNGSRVLITLTRIKMV 306 (467)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivT~TR~~~v 306 (467)
...+..+.......+...+. ..+-++++|.+...+.+..+...+. .|..+|+| |....+
T Consensus 172 ~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~t-tH~~~~ 231 (270)
T TIGR02858 172 IRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIAT-AHGRDV 231 (270)
T ss_pred ccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEE-echhHH
Confidence 00011111111222333332 4788999999987777777766653 47789999 776544
No 209
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.026 Score=57.52 Aligned_cols=51 Identities=20% Similarity=0.302 Sum_probs=37.9
Q ss_pred CCccccchh---HHHHHHHHHhcCC-------CCcEEEEEECCCCChHHHHHHHHhcCccc
Q 041567 158 NRNTVGLDD---RMEELLDLLIEGP-------NQLSVVAILNSIGLDKTAFTAEAYNSSYV 208 (467)
Q Consensus 158 ~~~~vGr~~---~~~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (467)
-+++.|-|+ ++++|+++|.++. .=++=|.++|++|.|||-||+.++....|
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 356677665 5667788887652 23556889999999999999999985433
No 210
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.23 E-value=0.028 Score=50.19 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=21.7
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
-.+++|.|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999873
No 211
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.22 E-value=0.012 Score=58.06 Aligned_cols=31 Identities=10% Similarity=-0.002 Sum_probs=25.8
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCccccCcc
Q 041567 180 NQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYF 212 (467)
Q Consensus 180 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 212 (467)
..+..++|||++|.|||.+|+.+++ +..-.|
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~--elg~~~ 176 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFK--KMGIEP 176 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHH--HcCCCe
Confidence 4578999999999999999999999 444443
No 212
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.19 E-value=0.022 Score=55.06 Aligned_cols=41 Identities=24% Similarity=0.246 Sum_probs=27.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAP 221 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~ 221 (467)
...+++|+|++|+||||++..+......+..-..+..|+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D 233 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD 233 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 35799999999999999998887632212111245556654
No 213
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.19 E-value=0.089 Score=53.82 Aligned_cols=40 Identities=23% Similarity=0.118 Sum_probs=26.7
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAP 221 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~ 221 (467)
.+++.++|++|+||||++..+.........-..+..|+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D 260 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLD 260 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 4699999999999999888776521101222345566654
No 214
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.15 E-value=0.15 Score=51.33 Aligned_cols=101 Identities=14% Similarity=0.158 Sum_probs=54.1
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcccc--CccceEEEEEcCCCCCHHHH--H-HHHHHhhCCCCccccCCCCCHHHHH
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVK--HYFDHLAWIPAPYHYDAYQI--L-DIVTMFLLPFSMLSKIKDKDYEMKK 255 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--~~F~~~~wv~v~~~~~~~~~--~-~il~~l~~~~~~~~~~~~~~~~~~~ 255 (467)
...+|.++|..|+||||.+..+....... .+=..+..++... +..... + ...+.++.+.. ...+.+.+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt-~R~aa~eQL~~~a~~lgvpv~-----~~~~~~~l~ 246 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN-YRIGAKKQIQTYGDIMGIPVK-----AIESFKDLK 246 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC-ccHHHHHHHHHHhhcCCcceE-----eeCcHHHHH
Confidence 36799999999999999888887632111 1112455555543 222221 3 44444443221 222344555
Q ss_pred HHHHHhhCCceEEEEEecCCCc----chHHHHHHhhcC
Q 041567 256 INLGEYLMTKWYLIVLDDVWST----NVLDVVREILLD 289 (467)
Q Consensus 256 ~~l~~~L~~kr~LlVlDdv~~~----~~~~~l~~~l~~ 289 (467)
..+... .+.-++++|..... ..+..+...+..
T Consensus 247 ~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~ 282 (388)
T PRK12723 247 EEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNA 282 (388)
T ss_pred HHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHh
Confidence 545443 34568888887432 234455555543
No 215
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.12 E-value=0.05 Score=52.19 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=28.1
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAP 221 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~ 221 (467)
+.++|.++|.+|+||||++..++. .....-..+.+++..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~--~l~~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLAN--KLKKQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEeCC
Confidence 468999999999999998888876 333332345566554
No 216
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.015 Score=55.71 Aligned_cols=79 Identities=11% Similarity=0.109 Sum_probs=51.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccc--cCccceEEEEEcCCCCCHHHHH-HHHHHhhCCCCccccCCCCCHHHHHHHH
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYV--KHYFDHLAWIPAPYHYDAYQIL-DIVTMFLLPFSMLSKIKDKDYEMKKINL 258 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~--~~~F~~~~wv~v~~~~~~~~~~-~il~~l~~~~~~~~~~~~~~~~~~~~~l 258 (467)
-++|.++|++|.|||+|++.+++.-.+ ...|....-+.++.+ .++ +.... ...-...+.+.|
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLFSKWFsE-----------SgKlV~kmF~kI 241 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLFSKWFSE-----------SGKLVAKMFQKI 241 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHHHHHHhh-----------hhhHHHHHHHHH
Confidence 588999999999999999999997443 345555555544332 333 33322 222446677778
Q ss_pred HHhhCCceE--EEEEecCC
Q 041567 259 GEYLMTKWY--LIVLDDVW 275 (467)
Q Consensus 259 ~~~L~~kr~--LlVlDdv~ 275 (467)
.+.+.++.. ++.+|.|.
T Consensus 242 ~ELv~d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 242 QELVEDRGNLVFVLIDEVE 260 (423)
T ss_pred HHHHhCCCcEEEEEeHHHH
Confidence 888877654 45678884
No 217
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.12 E-value=0.016 Score=61.15 Aligned_cols=73 Identities=15% Similarity=0.100 Sum_probs=51.4
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHhhCCCCccccCCCCCHHHHHHHH
Q 041567 180 NQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMFLLPFSMLSKIKDKDYEMKKINL 258 (467)
Q Consensus 180 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l~~~~~~~~~~~~~~~~~~~~~l 258 (467)
+.-++..++|++|+||||||.-++++. -| .++=|++|.+-+...+- .|...+....
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s------------------ 380 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHS------------------ 380 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhcc------------------
Confidence 356899999999999999999999843 22 25667888776666655 5555544322
Q ss_pred HHhh--CCceEEEEEecCCCc
Q 041567 259 GEYL--MTKWYLIVLDDVWST 277 (467)
Q Consensus 259 ~~~L--~~kr~LlVlDdv~~~ 277 (467)
.| .+++..||+|.+.-.
T Consensus 381 --~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 381 --VLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred --ccccCCCcceEEEecccCC
Confidence 12 147788999999654
No 218
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.11 E-value=0.092 Score=52.55 Aligned_cols=24 Identities=21% Similarity=0.327 Sum_probs=21.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+.++|+++|.+|+||||++..++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999988876
No 219
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.09 E-value=0.048 Score=59.59 Aligned_cols=47 Identities=21% Similarity=0.188 Sum_probs=38.1
Q ss_pred CccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 159 RNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..++|....+..+.+.+..-.....-|.|+|..|+|||++|+.+++.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 46999999999988777643333457889999999999999999874
No 220
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.09 E-value=0.0037 Score=52.20 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=19.0
Q ss_pred EEEECCCCChHHHHHHHHhc
Q 041567 185 VAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~ 204 (467)
|.|.|.+|+||||+|+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999988
No 221
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.07 E-value=0.028 Score=55.48 Aligned_cols=46 Identities=17% Similarity=0.145 Sum_probs=37.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 159 RNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..++|....+.++.+.+..-.....-|.|+|..|+||+++|+.++.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 4589999999999888765433345678999999999999999986
No 222
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.07 E-value=0.072 Score=54.36 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=20.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+.++.++|.+|+||||+|..++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 367999999999999998777665
No 223
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.07 E-value=0.029 Score=52.71 Aligned_cols=103 Identities=14% Similarity=0.067 Sum_probs=60.1
Q ss_pred HHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCC--------
Q 041567 170 ELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFS-------- 241 (467)
Q Consensus 170 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~-------- 241 (467)
.|-++|..+=+...++.|.|.+|.|||+||.++... .-..-..++|++... +..++..-+.+++-+..
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~--~~~~ge~~lyvs~ee--~~~~i~~~~~~~g~~~~~~~~~g~l 84 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGIYVALEE--HPVQVRRNMAQFGWDVRKYEEEGKF 84 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEEeeC--CHHHHHHHHHHhCCCHHHHhhcCCE
Confidence 344445444345789999999999999999887652 112345688888765 34444411223221100
Q ss_pred -----cc---------c---cCCCCCHHHHHHHHHHhhCC-ceEEEEEecCCC
Q 041567 242 -----ML---------S---KIKDKDYEMKKINLGEYLMT-KWYLIVLDDVWS 276 (467)
Q Consensus 242 -----~~---------~---~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~ 276 (467)
.+ . .....+.++....+.+.+.. +.-++|+|.+..
T Consensus 85 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~ 137 (237)
T TIGR03877 85 AIVDAFTGGIGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTT 137 (237)
T ss_pred EEEeccccccccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhH
Confidence 00 0 00123566777777776644 444799999853
No 224
>PRK08233 hypothetical protein; Provisional
Probab=96.06 E-value=0.0053 Score=54.89 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=21.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..+|+|.|.+|+||||||..+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999873
No 225
>PTZ00301 uridine kinase; Provisional
Probab=96.04 E-value=0.0066 Score=55.81 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=21.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 57999999999999999998876
No 226
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.03 E-value=0.025 Score=52.54 Aligned_cols=73 Identities=11% Similarity=0.024 Sum_probs=40.1
Q ss_pred EEEEECCCCChHHHHHHHHhcCccccCc-c-ceEEEEEcCCCCCHHHHH-HHHHHhhCCCCccccCCCCCHHHHHHHHHH
Q 041567 184 VVAILNSIGLDKTAFTAEAYNSSYVKHY-F-DHLAWIPAPYHYDAYQIL-DIVTMFLLPFSMLSKIKDKDYEMKKINLGE 260 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F-~~~~wv~v~~~~~~~~~~-~il~~l~~~~~~~~~~~~~~~~~~~~~l~~ 260 (467)
+|+|.|.+|+||||||+.+.. ..... . ..+..++...-+.....+ ... .+. ... .....+.+.+...+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~--~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~-~~~-~~g---~p~~~d~~~l~~~L~~ 73 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA--LLSRWPDHPNVELITTDGFLYPNKELIERG-LMD-RKG---FPESYDMEALLKFLKD 73 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH--HHhhcCCCCcEEEEecCcccCcHHHHHHhh-hhh-cCC---CcccCCHHHHHHHHHH
Confidence 589999999999999999987 33210 1 224455555443322222 211 111 111 1244566666666666
Q ss_pred hhC
Q 041567 261 YLM 263 (467)
Q Consensus 261 ~L~ 263 (467)
...
T Consensus 74 l~~ 76 (220)
T cd02025 74 IKS 76 (220)
T ss_pred HHC
Confidence 655
No 227
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.01 E-value=0.067 Score=47.74 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.7
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|+.|+|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 56899999999999999998864
No 228
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.00 E-value=0.0058 Score=56.21 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=22.4
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+..+|+|.|.+|+|||||++.+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999988
No 229
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.00 E-value=0.0099 Score=54.90 Aligned_cols=119 Identities=16% Similarity=0.168 Sum_probs=57.6
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHhhCCCCccccCCCCCHHHHHHHHHH
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMFLLPFSMLSKIKDKDYEMKKINLGE 260 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l~~~~~~~~~~~~~~~~~~~~~l~~ 260 (467)
.+++.|+|+.|.|||||.+.+...... . ....|+.... .. ...+ ++...+.......+.. .....-..++..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a--~~G~~v~a~~-~~-~~~~d~i~~~l~~~~si~~~~--S~f~~el~~l~~ 101 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-A--HIGSFVPADS-AT-IGLVDKIFTRMSSRESVSSGQ--SAFMIDLYQVSK 101 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-H--hCCCeeEcCC-cE-EeeeeeeeeeeCCccChhhcc--chHHHHHHHHHH
Confidence 488999999999999999988742111 0 1111121111 00 0122 3333333222111111 111222223333
Q ss_pred h--hCCceEEEEEecCCCcch---H----HHHHHhhcCC-CCCcEEEEecCccccccc
Q 041567 261 Y--LMTKWYLIVLDDVWSTNV---L----DVVREILLDN-QNGSRVLITLTRIKMVTR 308 (467)
Q Consensus 261 ~--L~~kr~LlVlDdv~~~~~---~----~~l~~~l~~~-~~gs~iivT~TR~~~v~~ 308 (467)
. +..++.|++||......+ . ..+...+... ..+..+|+| |....++.
T Consensus 102 ~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~-TH~~~l~~ 158 (213)
T cd03281 102 ALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVS-THFHELFN 158 (213)
T ss_pred HHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEE-cChHHHHH
Confidence 2 246789999999865421 1 1223333322 234578888 88766654
No 230
>PRK06547 hypothetical protein; Provisional
Probab=95.99 E-value=0.01 Score=52.81 Aligned_cols=34 Identities=18% Similarity=0.095 Sum_probs=26.4
Q ss_pred HHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 170 ELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 170 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.+...+.. ....+|+|.|.+|+||||+|+.+...
T Consensus 5 ~~~~~~~~--~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 5 LIAARLCG--GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred HHHHHhhc--CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34444443 35789999999999999999999873
No 231
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.99 E-value=0.08 Score=45.53 Aligned_cols=24 Identities=8% Similarity=0.080 Sum_probs=21.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999873
No 232
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.99 E-value=0.1 Score=48.99 Aligned_cols=124 Identities=14% Similarity=0.113 Sum_probs=68.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCc-----ccc------Ccc---ceEEEEEcCCCC------CHH--------------
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSS-----YVK------HYF---DHLAWIPAPYHY------DAY-------------- 227 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~-----~~~------~~F---~~~~wv~v~~~~------~~~-------------- 227 (467)
-.+++|+|+.|.|||||.+.+..-- ++. ..+ ..+.||+-..++ ++.
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 4799999999999999999998721 010 001 134455321111 111
Q ss_pred --------HHH-HHHHHhhCCCCccccCCCCCHHHHH-HHHHHhhCCceEEEEEecCCCc------chHHHHHHhhcCCC
Q 041567 228 --------QIL-DIVTMFLLPFSMLSKIKDKDYEMKK-INLGEYLMTKWYLIVLDDVWST------NVLDVVREILLDNQ 291 (467)
Q Consensus 228 --------~~~-~il~~l~~~~~~~~~~~~~~~~~~~-~~l~~~L~~kr~LlVlDdv~~~------~~~~~l~~~l~~~~ 291 (467)
+.. +.|+.++...-....+...+-.+.+ -.|.+.|..++=||+||.-... ...-.+...+...
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e- 188 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE- 188 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 223 4455554422111123344444444 4466678889999999975432 2333444444433
Q ss_pred CCcEEEEecCccccccc
Q 041567 292 NGSRVLITLTRIKMVTR 308 (467)
Q Consensus 292 ~gs~iivT~TR~~~v~~ 308 (467)
|..||++ |.+-....
T Consensus 189 -g~tIl~v-tHDL~~v~ 203 (254)
T COG1121 189 -GKTVLMV-THDLGLVM 203 (254)
T ss_pred -CCEEEEE-eCCcHHhH
Confidence 7888888 77654444
No 233
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.98 E-value=0.029 Score=49.38 Aligned_cols=111 Identities=11% Similarity=0.036 Sum_probs=57.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCC--CCCHHHHHHHHHHhhCCCCccccCCCCCH-HHHHHHH
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPY--HYDAYQILDIVTMFLLPFSMLSKIKDKDY-EMKKINL 258 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~--~~~~~~~~~il~~l~~~~~~~~~~~~~~~-~~~~~~l 258 (467)
-.+++|.|..|.|||||.+.+... .......+++.-.. ..+..+.. -+.++-- ...+. +...-.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~--~~~i~~~-------~qLS~G~~qrl~l 93 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDAR--RAGIAMV-------YQLSVGERQMVEI 93 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHH--hcCeEEE-------EecCHHHHHHHHH
Confidence 468999999999999999999873 22344555543211 01111111 0011100 00122 2233345
Q ss_pred HHhhCCceEEEEEecCCCc---chHHHHHHhhcCC-CCCcEEEEecCcccc
Q 041567 259 GEYLMTKWYLIVLDDVWST---NVLDVVREILLDN-QNGSRVLITLTRIKM 305 (467)
Q Consensus 259 ~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~~-~~gs~iivT~TR~~~ 305 (467)
...+-.++-++++|+.-.. .....+...+... ..|..||++ |.+..
T Consensus 94 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~-sh~~~ 143 (163)
T cd03216 94 ARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFI-SHRLD 143 (163)
T ss_pred HHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEE-eCCHH
Confidence 5556667788899988543 3333343333321 235567777 65543
No 234
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.98 E-value=0.062 Score=53.68 Aligned_cols=86 Identities=20% Similarity=0.190 Sum_probs=46.7
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCcc--ceEEEEEcCCC-CCHHHHH-HHHHHhhCCCCccccCCCCCHHHHHHH
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYF--DHLAWIPAPYH-YDAYQIL-DIVTMFLLPFSMLSKIKDKDYEMKKIN 257 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~v~~~-~~~~~~~-~il~~l~~~~~~~~~~~~~~~~~~~~~ 257 (467)
..++.++|+.|+||||++..+.. +....+ ..+..++.... ....+-+ ...+.++.+.. ...+..++...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~--~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~-----~~~~~~~l~~~ 209 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA--RCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH-----AVKDGGDLQLA 209 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE-----ecCCcccHHHH
Confidence 56999999999999999999987 322222 34555554322 2233333 44444443221 11122233333
Q ss_pred HHHhhCCceEEEEEecCCC
Q 041567 258 LGEYLMTKWYLIVLDDVWS 276 (467)
Q Consensus 258 l~~~L~~kr~LlVlDdv~~ 276 (467)
+. .+.++ -+|++|....
T Consensus 210 l~-~l~~~-DlVLIDTaG~ 226 (374)
T PRK14722 210 LA-ELRNK-HMVLIDTIGM 226 (374)
T ss_pred HH-HhcCC-CEEEEcCCCC
Confidence 33 33444 4566888853
No 235
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.97 E-value=0.0061 Score=56.01 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=22.2
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|+|+|.+|+|||||++.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 236
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.97 E-value=0.048 Score=49.61 Aligned_cols=23 Identities=17% Similarity=0.133 Sum_probs=20.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-+++.|.|.+|.||||+.+.+..
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~ 40 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAE 40 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHH
T ss_pred CeEEEEEECCCCCHHHHHHHHHH
Confidence 36788899999999999998876
No 237
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.96 E-value=0.13 Score=54.48 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=40.5
Q ss_pred CCCCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 156 SKNRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.....++|....+.++.+.+..-......|.|+|..|+|||++|+.+++.
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 34567999999999999888654333456779999999999999999974
No 238
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.011 Score=63.67 Aligned_cols=44 Identities=18% Similarity=0.330 Sum_probs=34.4
Q ss_pred CccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 159 RNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..++||++++.++++.|.....+-++ ++|.+|+|||+++.-++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPv--LiGEpGVGKTAIvEGLA~ 213 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPV--LVGEPGVGKTAIVEGLAQ 213 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCe--EecCCCCCHHHHHHHHHH
Confidence 34899999999999999876433333 579999999997665555
No 239
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.95 E-value=0.022 Score=51.80 Aligned_cols=38 Identities=26% Similarity=0.262 Sum_probs=25.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAP 221 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~ 221 (467)
+++|.++|+.|+||||.+..++.. .+..=..+..++..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~D 38 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISAD 38 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEES
T ss_pred CEEEEEECCCCCchHhHHHHHHHH--HhhccccceeecCC
Confidence 479999999999999877666652 22223345566654
No 240
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.94 E-value=0.054 Score=55.42 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=21.8
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+.+|.++|.+|+||||++..++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~ 117 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR 117 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999988876
No 241
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.93 E-value=0.034 Score=54.27 Aligned_cols=130 Identities=16% Similarity=0.284 Sum_probs=70.1
Q ss_pred Ccccc---chhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC-ccccCccceEE----EEEcCCCC-----C
Q 041567 159 RNTVG---LDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS-SYVKHYFDHLA----WIPAPYHY-----D 225 (467)
Q Consensus 159 ~~~vG---r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~-~~~~~~F~~~~----wv~v~~~~-----~ 225 (467)
....| |..+..--+++|+.++ +..|.+.|.+|.|||.||-...=. ...++.|..++ -+.++++. +
T Consensus 221 ~~vwGi~prn~eQ~~ALdlLld~d--I~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~ 298 (436)
T COG1875 221 QEVWGIRPRNAEQRVALDLLLDDD--IDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGT 298 (436)
T ss_pred hhhhccCcccHHHHHHHHHhcCCC--CCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCc
Confidence 34445 5555555667777664 899999999999999877554321 12234454322 23344432 1
Q ss_pred HHHHH--------HHHHHhhCCCCccccCCCCCHHHHHHHH-H---------HhhCCc---eEEEEEecCCCcchHHHHH
Q 041567 226 AYQIL--------DIVTMFLLPFSMLSKIKDKDYEMKKINL-G---------EYLMTK---WYLIVLDDVWSTNVLDVVR 284 (467)
Q Consensus 226 ~~~~~--------~il~~l~~~~~~~~~~~~~~~~~~~~~l-~---------~~L~~k---r~LlVlDdv~~~~~~~~l~ 284 (467)
.++-+ +-++.+.... ... ....+.+ . .+.+|+ ..++|+|...+-.. .++.
T Consensus 299 eEeKm~PWmq~i~DnLE~L~~~~-------~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp-heik 369 (436)
T COG1875 299 EEEKMGPWMQAIFDNLEVLFSPN-------EPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP-HELK 369 (436)
T ss_pred hhhhccchHHHHHhHHHHHhccc-------ccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH-HHHH
Confidence 11111 2222222211 111 2222222 1 123443 46899999976532 3445
Q ss_pred HhhcCCCCCcEEEEe
Q 041567 285 EILLDNQNGSRVLIT 299 (467)
Q Consensus 285 ~~l~~~~~gs~iivT 299 (467)
..+...+.||||+.|
T Consensus 370 TiltR~G~GsKIVl~ 384 (436)
T COG1875 370 TILTRAGEGSKIVLT 384 (436)
T ss_pred HHHHhccCCCEEEEc
Confidence 555567889999999
No 242
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.90 E-value=0.01 Score=60.83 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=37.3
Q ss_pred CccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 159 RNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..++||++.++.+...+..+. -|.|.|++|+|||+||+.+...
T Consensus 20 ~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHH
Confidence 348999999999999888653 6779999999999999999873
No 243
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.057 Score=53.63 Aligned_cols=102 Identities=21% Similarity=0.155 Sum_probs=62.6
Q ss_pred hHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCcccc
Q 041567 166 DRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLSK 245 (467)
Q Consensus 166 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~~ 245 (467)
....++-..|-.+=-.-.+|.|-|-+|||||||.-++.. +....- .+++|+--++ ..++---+..|+.+.+...-
T Consensus 77 tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsGEES--~~QiklRA~RL~~~~~~l~l 151 (456)
T COG1066 77 TGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSGEES--LQQIKLRADRLGLPTNNLYL 151 (456)
T ss_pred CChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeCCcC--HHHHHHHHHHhCCCccceEE
Confidence 344555555544433467999999999999999999988 444333 6777765443 33333334445433221112
Q ss_pred CCCCCHHHHHHHHHHhhCCceEEEEEecCC
Q 041567 246 IKDKDYEMKKINLGEYLMTKWYLIVLDDVW 275 (467)
Q Consensus 246 ~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~ 275 (467)
....+.+.+.+.+.+ .++-|+|+|-+.
T Consensus 152 ~aEt~~e~I~~~l~~---~~p~lvVIDSIQ 178 (456)
T COG1066 152 LAETNLEDIIAELEQ---EKPDLVVIDSIQ 178 (456)
T ss_pred ehhcCHHHHHHHHHh---cCCCEEEEeccc
Confidence 234455555555554 588899999984
No 244
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.85 E-value=0.018 Score=53.58 Aligned_cols=153 Identities=14% Similarity=0.056 Sum_probs=74.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHhhCCCCccccCCCCCHHHHHHHHH
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMFLLPFSMLSKIKDKDYEMKKINLG 259 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l~~~~~~~~~~~~~~~~~~~~~l~ 259 (467)
..+++.|.|+.|.||||+.+.+.... + .+....+|..... .-... .++..++....... .-.....-...+.
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~-~--la~~g~~vpa~~~--~~~~~~~il~~~~l~d~~~~--~lS~~~~e~~~~a 101 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIV-L--MAQIGCFVPCDSA--DIPIVDCILARVGASDSQLK--GVSTFMAEMLETA 101 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-H--HHHhCCCcCcccE--EEeccceeEeeeccccchhc--CcChHHHHHHHHH
Confidence 46799999999999999988876420 0 0011112222110 01112 33333332211100 1112222233333
Q ss_pred Hhh--CCceEEEEEecCC---Ccc-----hHHHHHHhhcCCCCCcEEEEecCccccccc-cc---------cc-------
Q 041567 260 EYL--MTKWYLIVLDDVW---STN-----VLDVVREILLDNQNGSRVLITLTRIKMVTR-FQ---------FE------- 312 (467)
Q Consensus 260 ~~L--~~kr~LlVlDdv~---~~~-----~~~~l~~~l~~~~~gs~iivT~TR~~~v~~-~~---------F~------- 312 (467)
..+ ..++-|++||... +.. .|. +...+.. ..|+.+|+| |....+.. +. +.
T Consensus 102 ~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~-il~~l~~-~~~~~vlis-TH~~el~~~~~~~~~i~~g~~~~~~~~~~ 178 (222)
T cd03285 102 AILKSATENSLIIIDELGRGTSTYDGFGLAWA-IAEYIAT-QIKCFCLFA-THFHELTALADEVPNVKNLHVTALTDDAS 178 (222)
T ss_pred HHHHhCCCCeEEEEecCcCCCChHHHHHHHHH-HHHHHHh-cCCCeEEEE-echHHHHHHhhcCCCeEEEEEEEEEeCCC
Confidence 334 3578899999993 221 121 2123322 347789999 88765554 32 10
Q ss_pred ------ccccCCCChHHHHHHHHHHcCCChHHHHHHHh
Q 041567 313 ------NGESVRLDLVPTGGPLRVTYQGWPFLILYHGS 344 (467)
Q Consensus 313 ------~~~~~~~~~~~~~~~i~~~c~GlPLai~~i~~ 344 (467)
............|-++++++ |+|-.+.--|.
T Consensus 179 ~~~~~~Y~l~~G~~~~s~a~~~a~~~-g~p~~vi~~A~ 215 (222)
T cd03285 179 RTLTMLYKVEKGACDQSFGIHVAELA-NFPKEVIEMAK 215 (222)
T ss_pred CcEeEEEEEeeCCCCCcHHHHHHHHh-CcCHHHHHHHH
Confidence 00000111245677777776 88887765554
No 245
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.85 E-value=0.0065 Score=45.13 Aligned_cols=22 Identities=18% Similarity=0.296 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 041567 184 VVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
+|.|.|.+|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 246
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.85 E-value=0.09 Score=46.62 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=19.3
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 041567 184 VVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (467)
++.++|++|+||||++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999998887
No 247
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.85 E-value=0.014 Score=52.58 Aligned_cols=21 Identities=19% Similarity=0.037 Sum_probs=18.6
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 041567 184 VVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (467)
++.|.|..|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999873
No 248
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.84 E-value=0.059 Score=47.87 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=21.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
-.+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999999999873
No 249
>PRK04328 hypothetical protein; Provisional
Probab=95.84 E-value=0.041 Score=52.16 Aligned_cols=101 Identities=16% Similarity=0.100 Sum_probs=58.9
Q ss_pred HHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCC---------
Q 041567 171 LLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFS--------- 241 (467)
Q Consensus 171 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~--------- 241 (467)
|-++|..+=+.-.++.|.|.+|.|||+|+.++... .. ..-...+|++..+.+ .++...+++++....
T Consensus 12 LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~-~~-~~ge~~lyis~ee~~--~~i~~~~~~~g~d~~~~~~~~~l~ 87 (249)
T PRK04328 12 MDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGVYVALEEHP--VQVRRNMRQFGWDVRKYEEEGKFA 87 (249)
T ss_pred HHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHH-HH-hcCCcEEEEEeeCCH--HHHHHHHHHcCCCHHHHhhcCCEE
Confidence 34444443345789999999999999999987663 22 234567888876643 333333444432100
Q ss_pred ----cc--------c-c---CCCCCHHHHHHHHHHhhCC-ceEEEEEecCC
Q 041567 242 ----ML--------S-K---IKDKDYEMKKINLGEYLMT-KWYLIVLDDVW 275 (467)
Q Consensus 242 ----~~--------~-~---~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~ 275 (467)
.+ . . ....+.++....+.+.++. +.-++|+|.+.
T Consensus 88 iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt 138 (249)
T PRK04328 88 IVDAFTGGIGSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVS 138 (249)
T ss_pred EEeccccccccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChh
Confidence 00 0 0 0123455666667666654 44579999984
No 250
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.039 Score=53.77 Aligned_cols=124 Identities=16% Similarity=0.140 Sum_probs=76.6
Q ss_pred CccccchhHHHHHHHHHhcC-----------CCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHH
Q 041567 159 RNTVGLDDRMEELLDLLIEG-----------PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAY 227 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 227 (467)
.++-|-++.+++|.+.+.-+ =..++=|.++|++|.|||-||++|+| +....| +.+..+
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----IrvvgS---- 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVGS---- 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEeccH----
Confidence 45667999999998876432 13466788999999999999999999 555554 333322
Q ss_pred HHHHHHHHhhCCCCccccCCCCCHHHHHHHHHHhhCC-ceEEEEEecCCCc------------chH----HHHHHhhc--
Q 041567 228 QILDIVTMFLLPFSMLSKIKDKDYEMKKINLGEYLMT-KWYLIVLDDVWST------------NVL----DVVREILL-- 288 (467)
Q Consensus 228 ~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~~------------~~~----~~l~~~l~-- 288 (467)
++.+..-+.. ..+...+.+.-+. .++.|.+|.+... .+. -+|...+.
T Consensus 220 ---ElVqKYiGEG-----------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGF 285 (406)
T COG1222 220 ---ELVQKYIGEG-----------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGF 285 (406)
T ss_pred ---HHHHHHhccc-----------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCC
Confidence 3333333321 3455555555554 5889999988521 111 12333333
Q ss_pred CCCCCcEEEEecCccccccc
Q 041567 289 DNQNGSRVLITLTRIKMVTR 308 (467)
Q Consensus 289 ~~~~gs~iivT~TR~~~v~~ 308 (467)
+....-|||.. |...++..
T Consensus 286 D~~~nvKVI~A-TNR~D~LD 304 (406)
T COG1222 286 DPRGNVKVIMA-TNRPDILD 304 (406)
T ss_pred CCCCCeEEEEe-cCCccccC
Confidence 22335688888 77776665
No 251
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.83 E-value=0.053 Score=48.44 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=21.4
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|..|.|||||++.+..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 56999999999999999999986
No 252
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.82 E-value=0.12 Score=47.25 Aligned_cols=22 Identities=18% Similarity=-0.001 Sum_probs=20.3
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+++|.|+.|.|||||.+.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999998875
No 253
>PRK06762 hypothetical protein; Provisional
Probab=95.81 E-value=0.0076 Score=53.16 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=21.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+|.|.|++|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 254
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.80 E-value=0.06 Score=53.19 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=35.0
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 161 TVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 161 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
++|....+.++.+.+..-.....-|.|+|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 467777788887777654333456789999999999999999864
No 255
>PRK10867 signal recognition particle protein; Provisional
Probab=95.78 E-value=0.11 Score=52.98 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=20.2
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+.+|.++|.+|+||||.+..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999997766654
No 256
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.78 E-value=0.0093 Score=54.49 Aligned_cols=22 Identities=18% Similarity=-0.050 Sum_probs=20.2
Q ss_pred cEEEEEECCCCChHHHHHHHHh
Q 041567 182 LSVVAILNSIGLDKTAFTAEAY 203 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~ 203 (467)
-+++.|.|+.|.|||||.+.+.
T Consensus 28 ~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 28 KRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 3689999999999999999987
No 257
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.76 E-value=0.063 Score=55.32 Aligned_cols=101 Identities=22% Similarity=0.162 Sum_probs=57.8
Q ss_pred HHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCccccCC
Q 041567 168 MEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLSKIK 247 (467)
Q Consensus 168 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~~~~ 247 (467)
..++-+.|..+=..-.++.|.|.+|+|||||+.++... ....=..++|++..+. ..++..-+..++.......-..
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ees--~~qi~~ra~rlg~~~~~l~~~~ 141 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEES--ASQIKLRAERLGLPSDNLYLLA 141 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcccc--HHHHHHHHHHcCCChhcEEEeC
Confidence 34555555444344679999999999999999999873 2222235678876543 3343333444543211100112
Q ss_pred CCCHHHHHHHHHHhhCCceEEEEEecCC
Q 041567 248 DKDYEMKKINLGEYLMTKWYLIVLDDVW 275 (467)
Q Consensus 248 ~~~~~~~~~~l~~~L~~kr~LlVlDdv~ 275 (467)
..+.+.+...+.+ .+.-++|+|.+.
T Consensus 142 e~~l~~i~~~i~~---~~~~lVVIDSIq 166 (446)
T PRK11823 142 ETNLEAILATIEE---EKPDLVVIDSIQ 166 (446)
T ss_pred CCCHHHHHHHHHh---hCCCEEEEechh
Confidence 2344444444432 356689999984
No 258
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.76 E-value=0.054 Score=52.36 Aligned_cols=145 Identities=17% Similarity=0.132 Sum_probs=82.5
Q ss_pred CccccchhHHHHHHHHHhcC--CCCcEEEEEECCCCChHHHHHHHHhcC-ccccCccceEEEEEcCCCCCHHHHH--HHH
Q 041567 159 RNTVGLDDRMEELLDLLIEG--PNQLSVVAILNSIGLDKTAFTAEAYNS-SYVKHYFDHLAWIPAPYHYDAYQIL--DIV 233 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~-~~~~~~F~~~~wv~v~~~~~~~~~~--~il 233 (467)
..++|-.++..++-.+|... .+...-+.|+|+.|.|||+|......+ .++.++ .+-|...+....+++. .|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~---~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGEN---FLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCe---EEEEEECccchhhHHHHHHHH
Confidence 45899999998888888643 123456778999999999998877775 233333 3455666665555543 888
Q ss_pred HHhhCCCCccccCCCCCHHHHHHHHHHhhCC------ceEEEEEecCCCc--ch----HHHHHHhhc-CCCCCcEEEEec
Q 041567 234 TMFLLPFSMLSKIKDKDYEMKKINLGEYLMT------KWYLIVLDDVWST--NV----LDVVREILL-DNQNGSRVLITL 300 (467)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~------kr~LlVlDdv~~~--~~----~~~l~~~l~-~~~~gs~iivT~ 300 (467)
+++....... .....+..+-...+-..|+. -++..|+|..+-- .. +=.+...-. ...+-|-|-+|
T Consensus 101 rql~~e~~~~-~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T- 178 (408)
T KOG2228|consen 101 RQLALELNRI-VKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT- 178 (408)
T ss_pred HHHHHHHhhh-heeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee-
Confidence 8876532110 01222333444445555532 2578888876432 11 111111111 23345666788
Q ss_pred Cccccccc
Q 041567 301 TRIKMVTR 308 (467)
Q Consensus 301 TR~~~v~~ 308 (467)
||-.....
T Consensus 179 trld~lE~ 186 (408)
T KOG2228|consen 179 TRLDILEL 186 (408)
T ss_pred ccccHHHH
Confidence 88765443
No 259
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.72 E-value=0.074 Score=47.17 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=22.3
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.-.+++|+|..|.|||||.+.++.-
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3568999999999999999999873
No 260
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.71 E-value=0.025 Score=50.23 Aligned_cols=42 Identities=14% Similarity=-0.007 Sum_probs=31.0
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcccc-CccceEEEEEcCCCC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVK-HYFDHLAWIPAPYHY 224 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~v~~~~ 224 (467)
+..++.+.|+.|+|||.||+.+.. .+. ......+-++.+.-.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~ 44 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYS 44 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhccc
Confidence 357889999999999999999988 444 445566666665443
No 261
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.71 E-value=0.15 Score=44.98 Aligned_cols=24 Identities=13% Similarity=0.026 Sum_probs=21.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 568999999999999999999874
No 262
>PRK14974 cell division protein FtsY; Provisional
Probab=95.69 E-value=0.22 Score=49.15 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=21.0
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+..+|.++|++|+||||++..++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999998777776
No 263
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.68 E-value=0.068 Score=55.17 Aligned_cols=104 Identities=17% Similarity=0.126 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCccc
Q 041567 165 DDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLS 244 (467)
Q Consensus 165 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~ 244 (467)
..-..++-+.|-.+=..-.++.|.|.+|+|||||+.++... ....=..++|++..+. ..++..-+..++.......
T Consensus 77 ~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EEs--~~qi~~ra~rlg~~~~~l~ 152 (454)
T TIGR00416 77 SSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEES--LQQIKMRAIRLGLPEPNLY 152 (454)
T ss_pred ccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcCC--HHHHHHHHHHcCCChHHeE
Confidence 33445566666544345689999999999999999998763 2222135778876543 3333322333332211000
Q ss_pred cCCCCCHHHHHHHHHHhhCCceEEEEEecCC
Q 041567 245 KIKDKDYEMKKINLGEYLMTKWYLIVLDDVW 275 (467)
Q Consensus 245 ~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~ 275 (467)
-....+.+.+...+.+ .+.-++|+|.+.
T Consensus 153 ~~~e~~~~~I~~~i~~---~~~~~vVIDSIq 180 (454)
T TIGR00416 153 VLSETNWEQICANIEE---ENPQACVIDSIQ 180 (454)
T ss_pred EcCCCCHHHHHHHHHh---cCCcEEEEecch
Confidence 1122344544444433 356689999884
No 264
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.68 E-value=0.055 Score=50.93 Aligned_cols=94 Identities=13% Similarity=0.107 Sum_probs=55.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCC-----CCCHHHHH-HHHHHhhCCCCcc-ccCCCCCHHH
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPY-----HYDAYQIL-DIVTMFLLPFSML-SKIKDKDYEM 253 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~-----~~~~~~~~-~il~~l~~~~~~~-~~~~~~~~~~ 253 (467)
...+++|+|..|.|||||++.+.. .-+.-.+.++..-.+ .....+-. +++..++...... ......+-.+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 357999999999999999999997 222223333333211 11233334 7777777543210 0112222233
Q ss_pred H-HHHHHHhhCCceEEEEEecCCCc
Q 041567 254 K-KINLGEYLMTKWYLIVLDDVWST 277 (467)
Q Consensus 254 ~-~~~l~~~L~~kr~LlVlDdv~~~ 277 (467)
. .-.+.+.|.-++-|+|.|..-+.
T Consensus 115 rQRi~IARALal~P~liV~DEpvSa 139 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSA 139 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhh
Confidence 3 33466678889999999987543
No 265
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.67 E-value=0.06 Score=47.65 Aligned_cols=119 Identities=14% Similarity=0.036 Sum_probs=63.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceE--EEEEcCCCCCHHHHH-HHHHHhhC---CCCccccCCC-----CC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHL--AWIPAPYHYDAYQIL-DIVTMFLL---PFSMLSKIKD-----KD 250 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~--~wv~v~~~~~~~~~~-~il~~l~~---~~~~~~~~~~-----~~ 250 (467)
...|-|++..|.||||.|..+.-. .....+... -|+.-........++ .+ .+.. .........+ ..
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~r-a~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALR-ALGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHH-HHHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 357778888999999999777652 222333321 133333233444444 42 1111 1100000001 11
Q ss_pred HHHHHHHHHHhhCCce-EEEEEecCCCc-----chHHHHHHhhcCCCCCcEEEEecCccc
Q 041567 251 YEMKKINLGEYLMTKW-YLIVLDDVWST-----NVLDVVREILLDNQNGSRVLITLTRIK 304 (467)
Q Consensus 251 ~~~~~~~l~~~L~~kr-~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iivT~TR~~ 304 (467)
..+..+..++.+...+ =|||||.+-.. -..+.+...+.....+.-||+| -|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlT-GR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIIT-GRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEE-CCCC
Confidence 2233444555555544 49999998532 3445666666666677899999 7755
No 266
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.65 E-value=0.1 Score=46.48 Aligned_cols=56 Identities=14% Similarity=0.184 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhCCceEEEEEecC----CCcchHHHHHHhhcCCCCCcEEEEecCccccccc
Q 041567 252 EMKKINLGEYLMTKWYLIVLDDV----WSTNVLDVVREILLDNQNGSRVLITLTRIKMVTR 308 (467)
Q Consensus 252 ~~~~~~l~~~L~~kr~LlVlDdv----~~~~~~~~l~~~l~~~~~gs~iivT~TR~~~v~~ 308 (467)
++..-.|...+-+++-+|+-|.- .....|+-+.-.-.-+..|+.||++ |.+..+..
T Consensus 142 EQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~A-THd~~lv~ 201 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMA-THDLELVN 201 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEE-eccHHHHH
Confidence 34445566777788889998853 3334665443333346679999999 98877665
No 267
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.64 E-value=0.065 Score=47.61 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=21.4
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|..|.|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G 50 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999987
No 268
>PRK03839 putative kinase; Provisional
Probab=95.64 E-value=0.0085 Score=53.67 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 041567 184 VVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.|.|.|++|+||||+++.+++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999998
No 269
>PRK05439 pantothenate kinase; Provisional
Probab=95.63 E-value=0.067 Score=52.11 Aligned_cols=81 Identities=9% Similarity=0.030 Sum_probs=46.8
Q ss_pred CCCcEEEEEECCCCChHHHHHHHHhcCccccCc--cceEEEEEcCCCCCHHHHH-HHHHHhhCCCCccccCCCCCHHHHH
Q 041567 179 PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHY--FDHLAWIPAPYHYDAYQIL-DIVTMFLLPFSMLSKIKDKDYEMKK 255 (467)
Q Consensus 179 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~v~~~~~~~~~~-~il~~l~~~~~~~~~~~~~~~~~~~ 255 (467)
....-+|+|.|.+|+||||+|+.+.. ..... -..+.-++...-+.....+ .- .+....+. .+.-+.+.+.
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~~--~l~~~kg~---Pes~D~~~l~ 155 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEER--GLMKRKGF---PESYDMRALL 155 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhhh--hccccCCC---cccccHHHHH
Confidence 34578999999999999999998876 33322 1234445554433333222 10 11111111 2345667777
Q ss_pred HHHHHhhCCce
Q 041567 256 INLGEYLMTKW 266 (467)
Q Consensus 256 ~~l~~~L~~kr 266 (467)
..|.....++.
T Consensus 156 ~~L~~Lk~G~~ 166 (311)
T PRK05439 156 RFLSDVKSGKP 166 (311)
T ss_pred HHHHHHHcCCC
Confidence 77777777664
No 270
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.62 E-value=0.018 Score=48.61 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 166 DRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 166 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
++.+++.+.|...=....+|.+.|.-|.|||||++.+.+.
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3445555555433223569999999999999999999984
No 271
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.62 E-value=0.014 Score=50.77 Aligned_cols=36 Identities=11% Similarity=-0.093 Sum_probs=27.5
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEE
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIP 219 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 219 (467)
..+|-|.|.+|+||||||+.+.+ +....-..+++++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 46899999999999999999998 5555445555554
No 272
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.59 E-value=0.01 Score=53.30 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=21.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..++|.|.|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999986
No 273
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.58 E-value=0.11 Score=48.32 Aligned_cols=102 Identities=18% Similarity=0.082 Sum_probs=57.2
Q ss_pred HHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCC-------Cc
Q 041567 170 ELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPF-------SM 242 (467)
Q Consensus 170 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~-------~~ 242 (467)
.|-+.|..+=.....+.|.|.+|.|||||+..+... ....-..++|++.... ..++..-+.+++... ..
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~--~~~~g~~~~~is~e~~--~~~i~~~~~~~g~~~~~~~~~~~l 83 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYK--GLRDGDPVIYVTTEES--RESIIRQAAQFGMDFEKAIEEGKL 83 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHH--HHhcCCeEEEEEccCC--HHHHHHHHHHhCCCHHHHhhcCCE
Confidence 334444344345689999999999999999987652 1122346788887543 333332222222110 00
Q ss_pred ------------cccCCCCCHHHHHHHHHHhhCC---ceEEEEEecCC
Q 041567 243 ------------LSKIKDKDYEMKKINLGEYLMT---KWYLIVLDDVW 275 (467)
Q Consensus 243 ------------~~~~~~~~~~~~~~~l~~~L~~---kr~LlVlDdv~ 275 (467)
.......+.+++...+++.++. +.-++|+|.+.
T Consensus 84 ~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~ 131 (229)
T TIGR03881 84 VIIDALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMS 131 (229)
T ss_pred EEEEccccccccccccccCCHHHHHHHHHHHHHhhccCceEEEecCch
Confidence 0001234566677777766543 34578888874
No 274
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.57 E-value=0.016 Score=55.29 Aligned_cols=95 Identities=17% Similarity=0.086 Sum_probs=60.8
Q ss_pred cCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCC----------------
Q 041567 177 EGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPF---------------- 240 (467)
Q Consensus 177 ~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~---------------- 240 (467)
.+=+..+++.|+|.+|+|||+++.++.. +.......++||+..+.+ .++..-+.+++-..
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~~--~~l~~~~~~~g~d~~~~~~~g~l~i~d~~~ 93 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEESP--EELLENARSFGWDLEVYIEKGKLAILDAFL 93 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCCH--HHHHHHHHHcCCCHHHHhhcCCEEEEEccc
Confidence 3335678999999999999999999988 566668889999988753 33332222232210
Q ss_pred ---Ccc--ccCCCCCHHHHHHHHHHhhCC-ceEEEEEecCC
Q 041567 241 ---SML--SKIKDKDYEMKKINLGEYLMT-KWYLIVLDDVW 275 (467)
Q Consensus 241 ---~~~--~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~ 275 (467)
... ......+.+.+...+++.... +..-+|+|++-
T Consensus 94 ~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~ 134 (260)
T COG0467 94 SEKGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSIT 134 (260)
T ss_pred cccccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 000 001123556666777766544 36678889885
No 275
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.57 E-value=0.2 Score=50.89 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.4
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+++++|..|+||||+...+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999887765
No 276
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.56 E-value=0.088 Score=49.20 Aligned_cols=48 Identities=6% Similarity=0.170 Sum_probs=31.2
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HH
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DI 232 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~i 232 (467)
...++.|.|.+|.||||||.++... -.+.. ..+++++... +..+++ .+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 4569999999999999998666552 22222 3456666433 445555 44
No 277
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.56 E-value=0.45 Score=46.69 Aligned_cols=38 Identities=18% Similarity=0.116 Sum_probs=27.6
Q ss_pred hHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 166 DRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 166 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+.+...+..+. -...+.++|+.|+||+++|..+.+
T Consensus 11 ~~~~~l~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~lA~ 48 (319)
T PRK08769 11 RAYDQTVAALDAGR-LGHGLLICGPEGLGKRAVALALAE 48 (319)
T ss_pred HHHHHHHHHHHcCC-cceeEeeECCCCCCHHHHHHHHHH
Confidence 34556666665442 345688999999999999988876
No 278
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.54 E-value=0.068 Score=51.60 Aligned_cols=79 Identities=13% Similarity=0.021 Sum_probs=45.4
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCccccCcc--ceEEEEEcCCCCCHHHHHHHHHHhhC--CCCccccCCCCCHHHHH
Q 041567 180 NQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYF--DHLAWIPAPYHYDAYQILDIVTMFLL--PFSMLSKIKDKDYEMKK 255 (467)
Q Consensus 180 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~v~~~~~~~~~~~il~~l~~--~~~~~~~~~~~~~~~~~ 255 (467)
....+|+|.|..|+||||+|+.+.. ...... ..+..++...-+.....+ ...+. ... .....+.+.+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~--ll~~~~~~g~V~vi~~D~f~~~~~~l---~~~g~~~~~g---~P~s~D~~~l~ 131 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA--LLSRWPEHRKVELITTDGFLHPNQVL---KERNLMKKKG---FPESYDMHRLV 131 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCceEEEecccccccHHHH---HHcCCccccC---CChhccHHHHH
Confidence 3578999999999999999987754 222111 124455544433323333 11111 111 12556677777
Q ss_pred HHHHHhhCCce
Q 041567 256 INLGEYLMTKW 266 (467)
Q Consensus 256 ~~l~~~L~~kr 266 (467)
..+.....++.
T Consensus 132 ~~L~~Lk~g~~ 142 (290)
T TIGR00554 132 KFLSDLKSGKP 142 (290)
T ss_pred HHHHHHHCCCC
Confidence 77777766653
No 279
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.54 E-value=0.018 Score=53.86 Aligned_cols=64 Identities=14% Similarity=0.118 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH
Q 041567 167 RMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL 230 (467)
Q Consensus 167 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 230 (467)
...++++.|.....+..+|+|.|.||.|||||.-.+...-+-+.+=-.++=|+-|.+++--.++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccc
Confidence 4566777777655567899999999999999998887732222222345566666666655555
No 280
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.51 E-value=0.039 Score=54.43 Aligned_cols=21 Identities=5% Similarity=0.036 Sum_probs=18.7
Q ss_pred EEEECCCCChHHHHHHHHhcC
Q 041567 185 VAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~~ 205 (467)
+.+.|++|.||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999873
No 281
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.50 E-value=0.34 Score=48.47 Aligned_cols=102 Identities=15% Similarity=0.120 Sum_probs=52.8
Q ss_pred CcEEEEEECCCCChHHH-HHHHHhcCccccCccceEEEEEcCCCC-CHHHHH-HHHHHhhCCCCccccCCCCCHHHHHHH
Q 041567 181 QLSVVAILNSIGLDKTA-FTAEAYNSSYVKHYFDHLAWIPAPYHY-DAYQIL-DIVTMFLLPFSMLSKIKDKDYEMKKIN 257 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTt-LA~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~-~il~~l~~~~~~~~~~~~~~~~~~~~~ 257 (467)
+.++|+++|+.|+|||| ||+..+.-.. ...=..+..|+...-- ...+-+ ...+-++.+-. ...+..++...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~-~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~-----vv~~~~el~~a 275 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVM-LKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE-----VVYSPKELAEA 275 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHh-hccCcceEEEEeccchhhHHHHHHHHHHHhCCceE-----EecCHHHHHHH
Confidence 37899999999999995 7777665221 1222345666554321 122222 22333333322 22344555555
Q ss_pred HHHhhCCceEEEEEecCCC----cchHHHHHHhhcCC
Q 041567 258 LGEYLMTKWYLIVLDDVWS----TNVLDVVREILLDN 290 (467)
Q Consensus 258 l~~~L~~kr~LlVlDdv~~----~~~~~~l~~~l~~~ 290 (467)
+... ++. =+|.+|-+.. ....+++...+...
T Consensus 276 i~~l-~~~-d~ILVDTaGrs~~D~~~i~el~~~~~~~ 310 (407)
T COG1419 276 IEAL-RDC-DVILVDTAGRSQYDKEKIEELKELIDVS 310 (407)
T ss_pred HHHh-hcC-CEEEEeCCCCCccCHHHHHHHHHHHhcc
Confidence 4443 333 4566677643 24555665555433
No 282
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.49 E-value=0.014 Score=48.76 Aligned_cols=41 Identities=20% Similarity=0.150 Sum_probs=23.7
Q ss_pred EEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH
Q 041567 185 VAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL 230 (467)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 230 (467)
|.|+|.+|+||||+|+.+.. .....|.. |....+....+++
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~R---Iq~tpdllPsDi~ 42 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKR---IQFTPDLLPSDIL 42 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEE---EE--TT--HHHHH
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeE---EEecCCCCcccce
Confidence 67999999999999999998 67777754 2334444444444
No 283
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.49 E-value=0.16 Score=46.99 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=21.5
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
-.+++|+|..|.|||||++.+...
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999999763
No 284
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.47 E-value=0.13 Score=51.99 Aligned_cols=23 Identities=26% Similarity=0.187 Sum_probs=20.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..++.++|.+|+||||++..+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999998876
No 285
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.47 E-value=0.2 Score=47.88 Aligned_cols=53 Identities=11% Similarity=0.077 Sum_probs=36.1
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHh
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMF 236 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l 236 (467)
...++.|.|.+|+||||++.++..+.. ..+=..++|++... +..++. .+...+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 356888999999999999998876321 22124577887765 345566 555543
No 286
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.47 E-value=0.038 Score=55.60 Aligned_cols=52 Identities=13% Similarity=0.191 Sum_probs=39.0
Q ss_pred CccccchhHHHHHHHHHhcC------------CCCcEEEEEECCCCChHHHHHHHHhcCccccCcc
Q 041567 159 RNTVGLDDRMEELLDLLIEG------------PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYF 212 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 212 (467)
..++|.++.+..+.-.+... ....+-|.++|++|+|||++|+.+.. .....|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~--~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH--HhCCeE
Confidence 45789888888887666542 11346788999999999999999988 444444
No 287
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.45 E-value=0.096 Score=55.12 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=40.2
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
...++|....+.++.+.+..-.....-|.|+|..|+|||++|+.+.+.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 456899999999999888765444567889999999999999999874
No 288
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.45 E-value=0.12 Score=50.33 Aligned_cols=24 Identities=17% Similarity=0.087 Sum_probs=21.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
-.+++|+|..|.|||||.+.+...
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 569999999999999999999864
No 289
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.44 E-value=0.082 Score=57.19 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=31.5
Q ss_pred CccccchhHHHHHHHHHh---cC-------CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 159 RNTVGLDDRMEELLDLLI---EG-------PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.++.|.+...+++.+.+. .. ..-.+-|.++|++|.|||++|+.+.+
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~ 207 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 207 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 346677766666555432 21 01123488999999999999999988
No 290
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.43 E-value=0.078 Score=54.07 Aligned_cols=89 Identities=12% Similarity=0.084 Sum_probs=48.6
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHhhCCCCccccCCCCCH---------
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMFLLPFSMLSKIKDKDY--------- 251 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l~~~~~~~~~~~~~~~--------- 251 (467)
-..++|+|..|+|||||++.+.... .....+++..--..-++.++. ..+.......-.--...+.+.
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 4689999999999999999888632 222344454332344555555 444433211000000011111
Q ss_pred -HHHHHHHHHhhCCceEEEEEecCC
Q 041567 252 -EMKKINLGEYLMTKWYLIVLDDVW 275 (467)
Q Consensus 252 -~~~~~~l~~~L~~kr~LlVlDdv~ 275 (467)
-..+++++. +++.+||++||+-
T Consensus 242 a~~iAEyfrd--~G~~Vll~~DslT 264 (450)
T PRK06002 242 ATAIAEYFRD--RGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHHH--cCCCEEEeccchH
Confidence 112333333 4799999999984
No 291
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.43 E-value=0.027 Score=54.03 Aligned_cols=33 Identities=27% Similarity=0.372 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 169 EELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 169 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+++.+.... +-+.++|+.|+|||++++....
T Consensus 23 ~~ll~~l~~~~---~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 23 SYLLDLLLSNG---RPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp HHHHHHHHHCT---EEEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CcEEEECCCCCchhHHHHhhhc
Confidence 45666666543 4568999999999999999886
No 292
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.42 E-value=0.19 Score=46.73 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=21.7
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
-.+++|+|..|.|||||++.+...
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999863
No 293
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.40 E-value=0.074 Score=50.83 Aligned_cols=119 Identities=18% Similarity=0.228 Sum_probs=62.8
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCC
Q 041567 162 VGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFS 241 (467)
Q Consensus 162 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~ 241 (467)
.|...+..+.+..+.... ..+|.|.|..|+||||++..+.+ .+...-..++.+.-+.++....+ .++..
T Consensus 62 lg~~~~~~~~l~~~~~~~--~GlilisG~tGSGKTT~l~all~--~i~~~~~~iitiEdp~E~~~~~~----~q~~v--- 130 (264)
T cd01129 62 LGLKPENLEIFRKLLEKP--HGIILVTGPTGSGKTTTLYSALS--ELNTPEKNIITVEDPVEYQIPGI----NQVQV--- 130 (264)
T ss_pred cCCCHHHHHHHHHHHhcC--CCEEEEECCCCCcHHHHHHHHHh--hhCCCCCeEEEECCCceecCCCc----eEEEe---
Confidence 454444444443333322 45899999999999999998876 33221112233321211111100 01110
Q ss_pred ccccCCCCCHHHHHHHHHHhhCCceEEEEEecCCCcchHHHHHHhhcCCCCCcEEEEe
Q 041567 242 MLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWSTNVLDVVREILLDNQNGSRVLIT 299 (467)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivT 299 (467)
...........++..|+..+=.|+++++.+.+....+..... .|..++-|
T Consensus 131 -----~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~aa~---tGh~v~tT 180 (264)
T cd01129 131 -----NEKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQAAL---TGHLVLST 180 (264)
T ss_pred -----CCcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHHHH---cCCcEEEE
Confidence 000112356667777888888999999988876544433332 34445555
No 294
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.39 E-value=0.12 Score=48.16 Aligned_cols=49 Identities=14% Similarity=0.181 Sum_probs=38.1
Q ss_pred CCCccccchhHHHH---HHHHHhcC----CCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 157 KNRNTVGLDDRMEE---LLDLLIEG----PNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 157 ~~~~~vGr~~~~~~---l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.-++++|-++.+.. |++.|.+. +-.++-|..+|++|.|||.+|+.+.+.
T Consensus 119 t~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane 174 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE 174 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc
Confidence 34568897776653 56777665 345788999999999999999999993
No 295
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.38 E-value=0.18 Score=54.75 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=20.6
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+|+++|+.|+||||.+..+..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 47999999999999998888876
No 296
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.36 E-value=0.12 Score=46.46 Aligned_cols=119 Identities=15% Similarity=0.015 Sum_probs=63.4
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCC---CCCHHHHH-HHHHHhhC---CCCccccCCC-----C
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPY---HYDAYQIL-DIVTMFLL---PFSMLSKIKD-----K 249 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~---~~~~~~~~-~il~~l~~---~~~~~~~~~~-----~ 249 (467)
...|-|+|..|-||||.|..+.-. .....+. +..+.+-+ ......++ .+ ..+.. ..+....... .
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~r-a~g~G~~-V~ivQFlKg~~~~GE~~~l~~l-~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALR-AVGHGKK-VGVVQFIKGAWSTGERNLLEFG-GGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHH-HHHCCCe-EEEEEEecCCCccCHHHHHhcC-CCcEEEECCCCCcccCCCcHHHHH
Confidence 468889999999999999877652 1222222 23333222 23333444 31 11110 1100000001 1
Q ss_pred CHHHHHHHHHHhhCC-ceEEEEEecCCCc-----chHHHHHHhhcCCCCCcEEEEecCccc
Q 041567 250 DYEMKKINLGEYLMT-KWYLIVLDDVWST-----NVLDVVREILLDNQNGSRVLITLTRIK 304 (467)
Q Consensus 250 ~~~~~~~~l~~~L~~-kr~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iivT~TR~~ 304 (467)
...+..+..++.+.. +-=|||||.+-.. -..+++...+.....+.-||+| -|+.
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlT-GR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVIT-GRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEE-CCCC
Confidence 112234444555554 4459999999533 3456777777666777899999 6654
No 297
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.35 E-value=0.012 Score=54.93 Aligned_cols=59 Identities=15% Similarity=0.248 Sum_probs=37.4
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEE-------EEcCCCCCHHHHH---HHHHHhhC
Q 041567 180 NQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAW-------IPAPYHYDAYQIL---DIVTMFLL 238 (467)
Q Consensus 180 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~w-------v~v~~~~~~~~~~---~il~~l~~ 238 (467)
++...|.++||+|+||||+.++++.+..-+..-+.++= +...-+.|+++.. +.+.+...
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~L 85 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQL 85 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCC
Confidence 35678899999999999999999985333322222222 2223344666543 67776554
No 298
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.33 E-value=0.085 Score=45.99 Aligned_cols=110 Identities=15% Similarity=0.094 Sum_probs=56.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCC--CHHHHHHHHHHhhCCCCccccCCCCCHHHHHHHHH
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHY--DAYQILDIVTMFLLPFSMLSKIKDKDYEMKKINLG 259 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~ 259 (467)
-.+++|+|..|.|||||.+.+... . ......+++.-.... .... ....+.-.. .-..-+...-.+.
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~--~-~~~~G~i~~~~~~~~~~~~~~---~~~~i~~~~------qlS~G~~~r~~l~ 92 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGL--L-KPTSGEILIDGKDIAKLPLEE---LRRRIGYVP------QLSGGQRQRVALA 92 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--C-CCCccEEEECCEEcccCCHHH---HHhceEEEe------eCCHHHHHHHHHH
Confidence 469999999999999999999873 2 234455554322111 1111 111111100 0001122333355
Q ss_pred HhhCCceEEEEEecCCCc---chHHHHHHhhcC-CCCCcEEEEecCccc
Q 041567 260 EYLMTKWYLIVLDDVWST---NVLDVVREILLD-NQNGSRVLITLTRIK 304 (467)
Q Consensus 260 ~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~-~~~gs~iivT~TR~~ 304 (467)
..+...+-++++|..-.. .....+...+.. ...+..+|++ |.+.
T Consensus 93 ~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~-sh~~ 140 (157)
T cd00267 93 RALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIV-THDP 140 (157)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEE-eCCH
Confidence 556666788999998543 233333333321 1124567777 5544
No 299
>PRK04040 adenylate kinase; Provisional
Probab=95.32 E-value=0.013 Score=52.86 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=21.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+|+|+|++|+||||+++.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999999988
No 300
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.32 E-value=0.014 Score=51.71 Aligned_cols=23 Identities=9% Similarity=0.109 Sum_probs=21.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...|.++|++|+||||+|+.+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999998
No 301
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.31 E-value=0.21 Score=49.84 Aligned_cols=89 Identities=9% Similarity=0.027 Sum_probs=50.7
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCC-HHHHH-HHHHHhhCCCCccccCCCCCHHHHHHHH
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYD-AYQIL-DIVTMFLLPFSMLSKIKDKDYEMKKINL 258 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~-~il~~l~~~~~~~~~~~~~~~~~~~~~l 258 (467)
+.++++++|+.|+||||++..+... ....-..+.+|+...... ..+-+ .....++.+.. ...+..++...+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~-----~~~dp~dL~~al 277 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI-----VATSPAELEEAV 277 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE-----ecCCHHHHHHHH
Confidence 4689999999999999999888763 222223466676653322 22223 44444433211 223555555555
Q ss_pred HHhhC-CceEEEEEecCCC
Q 041567 259 GEYLM-TKWYLIVLDDVWS 276 (467)
Q Consensus 259 ~~~L~-~kr~LlVlDdv~~ 276 (467)
...-. +..=+|++|-...
T Consensus 278 ~~l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 278 QYMTYVNCVDHILIDTVGR 296 (407)
T ss_pred HHHHhcCCCCEEEEECCCC
Confidence 44321 3446788887754
No 302
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.31 E-value=0.065 Score=53.35 Aligned_cols=105 Identities=10% Similarity=0.041 Sum_probs=61.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCccccCCCCCHHHHHHHHHHh
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLSKIKDKDYEMKKINLGEY 261 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (467)
...|.|.|+.|+||||+.+.+.+ .+..+....++.- .++.. -...-...+..... ...+.......++..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~ti-Edp~E--~~~~~~~~~i~q~e-----vg~~~~~~~~~l~~~ 191 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIITI-EDPIE--YVHRNKRSLINQRE-----VGLDTLSFANALRAA 191 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEEE-cCChh--hhccCccceEEccc-----cCCCCcCHHHHHHHh
Confidence 46899999999999999999887 4444444555542 22111 00100000000000 011122356667788
Q ss_pred hCCceEEEEEecCCCcchHHHHHHhhcCCCCCcEEEEe
Q 041567 262 LMTKWYLIVLDDVWSTNVLDVVREILLDNQNGSRVLIT 299 (467)
Q Consensus 262 L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivT 299 (467)
|+..+=.|++|.+.+.+.+...... ...|..++.|
T Consensus 192 lr~~pd~i~vgEird~~~~~~~l~a---a~tGh~v~~T 226 (343)
T TIGR01420 192 LREDPDVILIGEMRDLETVELALTA---AETGHLVFGT 226 (343)
T ss_pred hccCCCEEEEeCCCCHHHHHHHHHH---HHcCCcEEEE
Confidence 8888999999999887766553333 2346667766
No 303
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.31 E-value=0.11 Score=53.02 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=20.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|+.|.||||||+.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 46899999999999999999865
No 304
>PRK00625 shikimate kinase; Provisional
Probab=95.30 E-value=0.013 Score=52.21 Aligned_cols=21 Identities=14% Similarity=0.110 Sum_probs=19.4
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 041567 184 VVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.|.++||+|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 305
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.29 E-value=0.025 Score=53.76 Aligned_cols=62 Identities=16% Similarity=0.106 Sum_probs=46.7
Q ss_pred HHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH
Q 041567 169 EELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL 230 (467)
Q Consensus 169 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 230 (467)
.+|+..|.....+..+|+|.|.||+|||||.-.+.....-+.+=-.++=|+-|.+++--.++
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccc
Confidence 56666666666678899999999999999998887744334444456677778888777777
No 306
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.28 E-value=0.075 Score=57.85 Aligned_cols=101 Identities=17% Similarity=0.018 Sum_probs=61.4
Q ss_pred HHHHHHHh-cCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCccccCC
Q 041567 169 EELLDLLI-EGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLSKIK 247 (467)
Q Consensus 169 ~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~~~~ 247 (467)
..|-.+|- .+=+..+++-|+|.+|+|||||+..++.. ....=..++|++..+.++.. .+++++.......-..
T Consensus 46 ~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~----~A~~lGvDl~~llv~~ 119 (790)
T PRK09519 46 IALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD----YAKKLGVDTDSLLVSQ 119 (790)
T ss_pred HHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH----HHHHcCCChhHeEEec
Confidence 34445554 33345789999999999999999887652 22233557899887777643 3444443211000112
Q ss_pred CCCHHHHHHHHHHhhCC-ceEEEEEecCC
Q 041567 248 DKDYEMKKINLGEYLMT-KWYLIVLDDVW 275 (467)
Q Consensus 248 ~~~~~~~~~~l~~~L~~-kr~LlVlDdv~ 275 (467)
..+.+.....+...++. +--|||+|.+-
T Consensus 120 ~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 120 PDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred CCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 22345566666666644 56789999984
No 307
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.28 E-value=0.011 Score=53.73 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 041567 184 VVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+|+|.|.+|+|||||++.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999977
No 308
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.28 E-value=0.068 Score=50.87 Aligned_cols=94 Identities=17% Similarity=0.161 Sum_probs=53.7
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccc--cCccceEEEEEcCCCCC-HHHHH-HHHHHhhCCCCc-cccCCCCCH-HH--
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYV--KHYFDHLAWIPAPYHYD-AYQIL-DIVTMFLLPFSM-LSKIKDKDY-EM-- 253 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~--~~~F~~~~wv~v~~~~~-~~~~~-~il~~l~~~~~~-~~~~~~~~~-~~-- 253 (467)
-+-++|.|-.|+|||+|+..+.++..+ +.+-+.++++-+++... ..++. .+...=...... .-...+.+. ..
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 467899999999999999998875331 22346788888887654 44444 444431111000 000011111 11
Q ss_pred ---HHHHHHHhh---CCceEEEEEecCC
Q 041567 254 ---KKINLGEYL---MTKWYLIVLDDVW 275 (467)
Q Consensus 254 ---~~~~l~~~L---~~kr~LlVlDdv~ 275 (467)
..-.+.+++ .++++|+++||+.
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~lt 176 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMT 176 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 122234444 3789999999984
No 309
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.28 E-value=0.26 Score=52.19 Aligned_cols=24 Identities=25% Similarity=0.152 Sum_probs=21.8
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+...++|+|..|.|||||++.+..
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 467999999999999999999975
No 310
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.26 E-value=0.02 Score=52.43 Aligned_cols=23 Identities=9% Similarity=-0.075 Sum_probs=20.5
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..++.|.|+.|.||||+.+.+..
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999988864
No 311
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.23 E-value=0.044 Score=55.21 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=39.8
Q ss_pred CCccccchhHHHHHHHHHhcC------------CCCcEEEEEECCCCChHHHHHHHHhcCccccCcc
Q 041567 158 NRNTVGLDDRMEELLDLLIEG------------PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYF 212 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 212 (467)
+..++|.++.+..+...+... +.....|.++|++|+|||+||+.+.. .....|
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk--~l~~~f 78 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPF 78 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH--HhCChh
Confidence 345899999999888877541 11246789999999999999999988 444444
No 312
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.22 E-value=0.12 Score=47.07 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=22.3
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
...+++|+|..|.|||||.+.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3569999999999999999999874
No 313
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.21 E-value=0.015 Score=51.91 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.6
Q ss_pred EEEEEECCCCChHHHHHHHHhcC
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.+++|+|++|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998773
No 314
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.19 E-value=0.018 Score=52.85 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=25.5
Q ss_pred HHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 174 LLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 174 ~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
|+.++......|.|+|++|+|||||++.+..
T Consensus 5 ~~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 5 WLFNKPAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred cccCCCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 3444445678999999999999999999976
No 315
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.18 E-value=0.015 Score=52.07 Aligned_cols=21 Identities=38% Similarity=0.463 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 041567 184 VVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+|+|.|.+|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 316
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.16 E-value=0.067 Score=48.20 Aligned_cols=118 Identities=14% Similarity=0.105 Sum_probs=60.1
Q ss_pred HHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCccccC
Q 041567 167 RMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLSKI 246 (467)
Q Consensus 167 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~~~ 246 (467)
+..+++...... ...+.|+|..|.|||||++.+.. .+...- ..+-+.-..+..... -... ++..... ..
T Consensus 13 ~~~~~l~~~v~~---g~~i~I~G~tGSGKTTll~aL~~--~i~~~~-~~i~ied~~E~~~~~-~~~~-~~~~~~~---~~ 81 (186)
T cd01130 13 LQAAYLWLAVEA---RKNILISGGTGSGKTTLLNALLA--FIPPDE-RIITIEDTAELQLPH-PNWV-RLVTRPG---NV 81 (186)
T ss_pred HHHHHHHHHHhC---CCEEEEECCCCCCHHHHHHHHHh--hcCCCC-CEEEECCccccCCCC-CCEE-EEEEecC---CC
Confidence 344444444433 46899999999999999999887 232211 122221100000000 0000 0000000 00
Q ss_pred CCCCHHHHHHHHHHhhCCceEEEEEecCCCcchHHHHHHhhcCCCCCcE-EEEe
Q 041567 247 KDKDYEMKKINLGEYLMTKWYLIVLDDVWSTNVLDVVREILLDNQNGSR-VLIT 299 (467)
Q Consensus 247 ~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~-iivT 299 (467)
.........+.++..++..+=.++++.+.+.+.++.+... ..|.. ++.|
T Consensus 82 ~~~~~~~~~~~l~~~lR~~pd~i~igEir~~ea~~~~~a~----~tGh~g~~~T 131 (186)
T cd01130 82 EGSGEVTMADLLRSALRMRPDRIIVGEVRGGEALDLLQAM----NTGHPGGMTT 131 (186)
T ss_pred CCCCccCHHHHHHHHhccCCCEEEEEccCcHHHHHHHHHH----hcCCCCceee
Confidence 1111223455666677777888999999988777654432 23444 5555
No 317
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.15 E-value=0.019 Score=51.16 Aligned_cols=24 Identities=17% Similarity=0.036 Sum_probs=22.0
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|.|+|.+|+||||+|+.+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356999999999999999999988
No 318
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.15 E-value=0.23 Score=44.30 Aligned_cols=23 Identities=22% Similarity=0.146 Sum_probs=21.4
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|..|.|||||.+.+..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 46999999999999999999987
No 319
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.15 E-value=0.05 Score=48.19 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=33.3
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 161 TVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 161 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
++|....+.++.+.+..-.....-|.|+|..|.||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478888888888877653323355669999999999999999984
No 320
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.13 E-value=0.071 Score=54.21 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=35.0
Q ss_pred CCccccchhHHHHHHHHHhc-------C-------CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 158 NRNTVGLDDRMEELLDLLIE-------G-------PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~-------~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+..++|.+..++.+...+.. . ......+.++|++|+|||+||+.+..
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 34689999988887655421 1 01235688999999999999999987
No 321
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=95.12 E-value=0.35 Score=44.72 Aligned_cols=21 Identities=10% Similarity=0.131 Sum_probs=19.6
Q ss_pred EEEEEECCCCChHHHHHHHHh
Q 041567 183 SVVAILNSIGLDKTAFTAEAY 203 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~ 203 (467)
.+++|.|+.|.||||+.+.+.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~ 51 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVA 51 (216)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 789999999999999999985
No 322
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.11 E-value=0.15 Score=51.91 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=21.2
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|.++|.+|+||||++..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999998888865
No 323
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.08 E-value=0.12 Score=47.63 Aligned_cols=21 Identities=14% Similarity=0.063 Sum_probs=19.2
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 041567 184 VVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999886
No 324
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.06 E-value=0.031 Score=50.49 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=28.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCcc--------ceEEEEEcCCC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYF--------DHLAWIPAPYH 223 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--------~~~~wv~v~~~ 223 (467)
-.+..|.|.+|+||||++..+..+......| ..++|++...+
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 3588899999999999998887643322222 25788887765
No 325
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.04 E-value=0.38 Score=44.00 Aligned_cols=24 Identities=13% Similarity=0.253 Sum_probs=21.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.-.+++|.|..|.|||||.+.+..
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999999999975
No 326
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.03 E-value=0.019 Score=51.29 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=20.7
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
++|+|+|+.|+|||||++.+.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999998
No 327
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.03 E-value=0.016 Score=52.31 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=22.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..+|+|-||-|+||||||+.+.++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 478999999999999999999984
No 328
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.03 E-value=0.015 Score=52.37 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 041567 184 VVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999883
No 329
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.02 E-value=0.029 Score=50.43 Aligned_cols=36 Identities=8% Similarity=0.124 Sum_probs=29.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEE
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIP 219 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 219 (467)
.++|.|+|+.|+|||||++.+.. .....|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeec
Confidence 46889999999999999999998 6667776555554
No 330
>PRK06217 hypothetical protein; Validated
Probab=95.00 E-value=0.017 Score=51.91 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 041567 184 VVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.|.|.|.+|+||||||+.+...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999984
No 331
>PRK13947 shikimate kinase; Provisional
Probab=95.00 E-value=0.017 Score=51.09 Aligned_cols=21 Identities=14% Similarity=0.252 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 041567 184 VVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999988
No 332
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.99 E-value=0.13 Score=50.48 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=21.8
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+..+++++|++|+||||++..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999988876
No 333
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.98 E-value=0.033 Score=47.73 Aligned_cols=38 Identities=16% Similarity=0.137 Sum_probs=27.2
Q ss_pred EEEEEECCCCChHHHHHHHHhcCcccc-CccceEEEEEcCC
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNSSYVK-HYFDHLAWIPAPY 222 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~v~~ 222 (467)
++|.|+|..|+|||||++.+.+. .. ..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~--l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE--LKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HhHcCCceEEEEEccC
Confidence 58999999999999999999984 43 5566555665554
No 334
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.98 E-value=0.14 Score=48.15 Aligned_cols=21 Identities=19% Similarity=0.120 Sum_probs=18.8
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 041567 184 VVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+-.|+|+||+|||+||..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999998876
No 335
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.97 E-value=0.017 Score=49.97 Aligned_cols=22 Identities=9% Similarity=0.238 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 041567 184 VVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
++.+.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999883
No 336
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.97 E-value=0.016 Score=47.17 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=18.2
Q ss_pred EEEECCCCChHHHHHHHHhc
Q 041567 185 VAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~ 204 (467)
|-|+|.+|+|||+||+.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999887
No 337
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.96 E-value=0.061 Score=53.22 Aligned_cols=63 Identities=19% Similarity=0.186 Sum_probs=49.1
Q ss_pred CccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH
Q 041567 159 RNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL 230 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 230 (467)
..++|.++....+...+..+ ..+.+.|.+|+|||+||+.+.. .... ..++|.+.......+++
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~--~l~~---~~~~i~~t~~l~p~d~~ 86 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALAR--ALGL---PFVRIQCTPDLLPSDLL 86 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHH--HhCC---CeEEEecCCCCCHHHhc
Confidence 34899888888888777765 3677999999999999999998 4443 34677777777777777
No 338
>PRK05973 replicative DNA helicase; Provisional
Probab=94.96 E-value=0.17 Score=47.27 Aligned_cols=46 Identities=15% Similarity=0.065 Sum_probs=31.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL 230 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 230 (467)
+..++.|.|.+|+|||+++.++.... .+. =..+++++...+ ..++.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~-a~~-Ge~vlyfSlEes--~~~i~ 108 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEA-MKS-GRTGVFFTLEYT--EQDVR 108 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH-Hhc-CCeEEEEEEeCC--HHHHH
Confidence 45789999999999999999887632 222 234666665543 45555
No 339
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.94 E-value=0.033 Score=54.54 Aligned_cols=48 Identities=13% Similarity=0.304 Sum_probs=42.0
Q ss_pred CCCccccchhHHHHHHHHHhcC----CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 157 KNRNTVGLDDRMEELLDLLIEG----PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-...++|.++.++++++.+... +..-+|+-++|+.|.|||||+..+.+
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999998754 45678999999999999999999887
No 340
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.93 E-value=0.026 Score=51.66 Aligned_cols=22 Identities=9% Similarity=-0.058 Sum_probs=20.5
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+++|+|..|.|||||.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 7999999999999999999983
No 341
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.93 E-value=0.084 Score=51.56 Aligned_cols=91 Identities=16% Similarity=0.073 Sum_probs=53.3
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCccccCCCCCHHHHHHHHH
Q 041567 180 NQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLSKIKDKDYEMKKINLG 259 (467)
Q Consensus 180 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~ 259 (467)
+.-+++-|+|..|+||||||..+.. ..+..-..++||+....++..- +..++.+.+..--......++..+.+.
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~----a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEY----AESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHH----HHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhH----HHhcCccccceEEecCCcHHHHHHHHH
Confidence 3467999999999999999999887 4444456789999887766543 333332211000011223455555555
Q ss_pred HhhCC-ceEEEEEecCCC
Q 041567 260 EYLMT-KWYLIVLDDVWS 276 (467)
Q Consensus 260 ~~L~~-kr~LlVlDdv~~ 276 (467)
..++. .--++|+|.|-.
T Consensus 125 ~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHTTSESEEEEE-CTT
T ss_pred HHhhcccccEEEEecCcc
Confidence 55544 456899999853
No 342
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.91 E-value=0.04 Score=50.63 Aligned_cols=45 Identities=16% Similarity=0.046 Sum_probs=29.4
Q ss_pred EEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHH
Q 041567 184 VVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQI 229 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~ 229 (467)
.|+|+|-||+||||+|..+... -..++=..+.=|+...++++...
T Consensus 2 kIaI~GKGG~GKTtiaalll~~-l~~~~~~~VLvVDaDpd~nL~~~ 46 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKR-LLSKGGYNVLVVDADPDSNLPEA 46 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHH-HHhcCCceEEEEeCCCCCChHHh
Confidence 6899999999999999885542 12222123455666666665443
No 343
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=94.89 E-value=0.083 Score=45.27 Aligned_cols=21 Identities=10% Similarity=0.113 Sum_probs=19.4
Q ss_pred EEEECCCCChHHHHHHHHhcC
Q 041567 185 VAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~~ 205 (467)
|+|+|.+|+|||||.+.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999875
No 344
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=94.88 E-value=0.26 Score=42.45 Aligned_cols=107 Identities=7% Similarity=0.092 Sum_probs=77.2
Q ss_pred cchHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCCCcCCChHHHHHHHHHHHHH
Q 041567 2 DIKFRLFSERLRRVLAGEEVTLPDAAKQPIHNLHAEIEIVTSWLSEFEDDMSWLLLQKKGKDEIDNPDLATVMDEINCFT 81 (467)
Q Consensus 2 ~a~v~~l~~kl~~~l~~~e~~~~~~~~~~~~~L~~~L~~i~~~l~~a~~~~~~~~~~~~~~~~~~~~~v~~Wl~~l~~~a 81 (467)
.|+++.+++.|...+ .+..+-...++.-+++|...++.|..++++.+.- ....+..-+.-++++.+..
T Consensus 8 gaalG~~~~eLlk~v-~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~-----------~~eld~~~~ee~e~L~~~L 75 (147)
T PF05659_consen 8 GAALGAVFGELLKAV-IDASKKSLSFKSILKRLESTLESIIPIIKEIDKL-----------NVELDRPRQEEIERLKELL 75 (147)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHH-----------hhhcCCchhHHHHHHHHHH
Confidence 367788888888888 7777888888999999999999999999999881 1222223366778899999
Q ss_pred hHHHHHHHHhHhhhhccccCCCcccchhhhHHHHHHHHHHHHHHHHHhh
Q 041567 82 CEFEKVIDTFINSITQQKSQSSCRKDICDALQGLQSRITEINQRVQQLK 130 (467)
Q Consensus 82 yd~ed~ld~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~l~~~l~~i~ 130 (467)
.+++++++.|..-.. ++++.. .+.+++|+++.+.+....
T Consensus 76 ~~g~~LV~k~sk~~r---------~n~~kk-~~y~~Ki~~le~~l~~f~ 114 (147)
T PF05659_consen 76 EKGKELVEKCSKVRR---------WNLYKK-PRYARKIEELEESLRRFI 114 (147)
T ss_pred HHHHHHHHHhccccH---------HHHHhh-HhHHHHHHHHHHHHHHHh
Confidence 999999988753210 011111 167777887777777665
No 345
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.88 E-value=0.021 Score=50.85 Aligned_cols=22 Identities=5% Similarity=0.125 Sum_probs=20.7
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
++|.+.|++|+||||+|+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 346
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.87 E-value=0.039 Score=54.02 Aligned_cols=47 Identities=11% Similarity=0.042 Sum_probs=35.6
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL 230 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 230 (467)
.+++.+.|.||+||||+|....- ........++-|+.....++.+++
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f 48 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVF 48 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhh
Confidence 47899999999999999988654 333333557778887777777777
No 347
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.86 E-value=0.023 Score=48.45 Aligned_cols=21 Identities=10% Similarity=0.302 Sum_probs=19.4
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 041567 184 VVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.|+|+|+.|+|||||++.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999998
No 348
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.86 E-value=0.018 Score=49.29 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 041567 184 VVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+|.|.|.+|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 349
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.17 Score=47.32 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=38.6
Q ss_pred CCccccchhHHHHHHHHHhcC-----------CCCcEEEEEECCCCChHHHHHHHHhcCccccCcc
Q 041567 158 NRNTVGLDDRMEELLDLLIEG-----------PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYF 212 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 212 (467)
-+++-|=.+.++.|.+..... -+..+=|.++|++|.|||-+|+.|.| +....|
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf 239 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF 239 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE
Confidence 345666777777776654321 13466788999999999999999999 666655
No 350
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.053 Score=56.86 Aligned_cols=93 Identities=14% Similarity=0.061 Sum_probs=57.0
Q ss_pred CccccchhHHHHHHHHHhcC-----------CCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHH
Q 041567 159 RNTVGLDDRMEELLDLLIEG-----------PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAY 227 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 227 (467)
.++.|.+...+.+.+.+... -...+.+.++|++|.|||.||+.+++ ....+|-.+.+-..
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~v~~~~l------- 312 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFISVKGSEL------- 312 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEEeeCHHH-------
Confidence 34566666666655544211 13456899999999999999999999 55555533222111
Q ss_pred HHHHHHHHhhCCCCccccCCCCCHHHHHHHHHHhhCCceEEEEEecCC
Q 041567 228 QILDIVTMFLLPFSMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVW 275 (467)
Q Consensus 228 ~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~ 275 (467)
+. ..-..+...+...+....+..++.|.+|.+.
T Consensus 313 -----~s----------k~vGesek~ir~~F~~A~~~~p~iiFiDEiD 345 (494)
T COG0464 313 -----LS----------KWVGESEKNIRELFEKARKLAPSIIFIDEID 345 (494)
T ss_pred -----hc----------cccchHHHHHHHHHHHHHcCCCcEEEEEchh
Confidence 11 0112233444455555556789999999995
No 351
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.85 E-value=0.29 Score=44.35 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=21.8
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.-.+++|.|..|.|||||.+.+..
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~G 57 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 356899999999999999999987
No 352
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.83 E-value=0.08 Score=54.32 Aligned_cols=94 Identities=12% Similarity=0.156 Sum_probs=54.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCC-HHHHH-HHHHHhhCCCCc-cccCCCCCHH-----
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYD-AYQIL-DIVTMFLLPFSM-LSKIKDKDYE----- 252 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~-~il~~l~~~~~~-~~~~~~~~~~----- 252 (467)
.-..++|.|.+|+|||||+..+.+... +.+-+.++++-+++... ..++. .++..-...... .-...+.+.-
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 356789999999999999988887422 22557788887776543 34455 554332111100 0001111111
Q ss_pred -HHHHHHHHhh---CCceEEEEEecCC
Q 041567 253 -MKKINLGEYL---MTKWYLIVLDDVW 275 (467)
Q Consensus 253 -~~~~~l~~~L---~~kr~LlVlDdv~ 275 (467)
...-.+.+++ +++.+||++||+-
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccch
Confidence 1122344444 3799999999993
No 353
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.81 E-value=0.1 Score=52.99 Aligned_cols=89 Identities=9% Similarity=-0.013 Sum_probs=51.0
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCH-HHHH-HHHHHhhCCCCc-cccCCCCCHH-----
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDA-YQIL-DIVTMFLLPFSM-LSKIKDKDYE----- 252 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~-~~~~-~il~~l~~~~~~-~~~~~~~~~~----- 252 (467)
.-..++|+|..|+|||||++.+.+. . ..+.++.+-+++.... .++. .++..-...... .-...+.+..
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~--~--~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRG--T--TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccC--C--CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 3568999999999999999999873 1 2245666667665443 3444 544332111100 0001111111
Q ss_pred -----HHHHHHHHhhCCceEEEEEecCC
Q 041567 253 -----MKKINLGEYLMTKWYLIVLDDVW 275 (467)
Q Consensus 253 -----~~~~~l~~~L~~kr~LlVlDdv~ 275 (467)
..+++++. +++.+||++||+-
T Consensus 237 ~~~A~tiAEyfrd--~G~~VLl~~DslT 262 (444)
T PRK08972 237 CETATTIAEYFRD--QGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHHH--cCCCEEEEEcChH
Confidence 12333333 5899999999994
No 354
>PLN02318 phosphoribulokinase/uridine kinase
Probab=94.81 E-value=0.037 Score=57.93 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=27.1
Q ss_pred HHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 172 LDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 172 ~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.+.|....++..+|+|.|.+|+||||||+.+...
T Consensus 55 ~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 55 CQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred HHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 3444444456889999999999999999999873
No 355
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.79 E-value=0.13 Score=53.76 Aligned_cols=104 Identities=13% Similarity=0.025 Sum_probs=63.8
Q ss_pred HHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCc-----
Q 041567 168 MEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSM----- 242 (467)
Q Consensus 168 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~----- 242 (467)
..++-+.|-.+=..-.++.|.|.+|+|||||+.++... ...+=..+++++..++ ..++..=+..++.....
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eEs--~~~i~~~~~~lg~~~~~~~~~g 324 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEES--RAQLLRNAYSWGIDFEEMEQQG 324 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCC--HHHHHHHHHHcCCChHHHhhCC
Confidence 44566666555456789999999999999999999873 3233345677766553 44444222444321100
Q ss_pred -----cccCCCCCHHHHHHHHHHhhCC-ceEEEEEecCC
Q 041567 243 -----LSKIKDKDYEMKKINLGEYLMT-KWYLIVLDDVW 275 (467)
Q Consensus 243 -----~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~ 275 (467)
.........++....+.+.+.. +.-.+|+|.+.
T Consensus 325 ~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 325 LLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred cEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 0011233456777777777754 55689999984
No 356
>PRK15453 phosphoribulokinase; Provisional
Probab=94.79 E-value=0.15 Score=48.64 Aligned_cols=81 Identities=14% Similarity=0.023 Sum_probs=44.3
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCC--CHHHHH-HHHH--HhhCCCCccccCCCCCHHHHH
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHY--DAYQIL-DIVT--MFLLPFSMLSKIKDKDYEMKK 255 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~--~~~~~~-~il~--~l~~~~~~~~~~~~~~~~~~~ 255 (467)
+..+|+|.|.+|+||||+|+.+.+ ..+..=.....++...-+ +..+.- .+.. .-+.+-+ .-..+..+.+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~--if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfd-hf~PdAnd~dlL~ 80 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK--IFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFS-HFGPEANLFDELE 80 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCC-CCCCCcccHHHHH
Confidence 468999999999999999998875 222111123344443322 322222 2211 1111111 1113556777788
Q ss_pred HHHHHhhCC
Q 041567 256 INLGEYLMT 264 (467)
Q Consensus 256 ~~l~~~L~~ 264 (467)
+.++...++
T Consensus 81 ~~l~~l~~~ 89 (290)
T PRK15453 81 QLFREYGET 89 (290)
T ss_pred HHHHHHhcC
Confidence 888877654
No 357
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.066 Score=55.60 Aligned_cols=123 Identities=15% Similarity=0.098 Sum_probs=69.2
Q ss_pred cccchhHHHHHHHHHhcC-----------CCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHH
Q 041567 161 TVGLDDRMEELLDLLIEG-----------PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQI 229 (467)
Q Consensus 161 ~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~ 229 (467)
+-|-++.+.+|.-.+... -....=|.+||++|.|||-||++|+| +-+-+| +++-.+
T Consensus 513 IGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP------ 579 (802)
T KOG0733|consen 513 IGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP------ 579 (802)
T ss_pred cccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH------
Confidence 334566666666555432 02345678999999999999999999 666666 344332
Q ss_pred HHHHHHhhCCCCccccCCCCCHHHHHHHHHHhhCCceEEEEEecCCCc-------c------hHHHHHHhhcCC--CCCc
Q 041567 230 LDIVTMFLLPFSMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWST-------N------VLDVVREILLDN--QNGS 294 (467)
Q Consensus 230 ~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-------~------~~~~l~~~l~~~--~~gs 294 (467)
+++..--+ .+........++.-..-+|.|.+|.+... . ..++++.-+... ..|-
T Consensus 580 -ELlNkYVG----------ESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV 648 (802)
T KOG0733|consen 580 -ELLNKYVG----------ESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGV 648 (802)
T ss_pred -HHHHHHhh----------hHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccce
Confidence 22222211 12222333333333457999999998531 1 234454444422 2455
Q ss_pred EEEEecCccccccc
Q 041567 295 RVLITLTRIKMVTR 308 (467)
Q Consensus 295 ~iivT~TR~~~v~~ 308 (467)
-||-. |...++..
T Consensus 649 ~viaA-TNRPDiID 661 (802)
T KOG0733|consen 649 YVIAA-TNRPDIID 661 (802)
T ss_pred EEEee-cCCCcccc
Confidence 56655 66665554
No 358
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=94.78 E-value=0.25 Score=48.34 Aligned_cols=24 Identities=17% Similarity=0.058 Sum_probs=21.7
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
-.+++|+|..|.|||||.+.+..-
T Consensus 33 Gei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 33 GECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999873
No 359
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.77 E-value=0.17 Score=53.38 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=35.8
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|....+.++++.+..-...-.-|.|+|..|.||++||+.+.+
T Consensus 203 f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 203 FSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred ccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHH
Confidence 34689999888888877753222234477999999999999999876
No 360
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.77 E-value=0.025 Score=51.73 Aligned_cols=24 Identities=8% Similarity=0.142 Sum_probs=21.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..+|+|+|++|+|||||++.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 568999999999999999999883
No 361
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.76 E-value=0.24 Score=51.23 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..|++++|..|+||||++..++.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 47999999999999999988886
No 362
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.75 E-value=0.052 Score=50.50 Aligned_cols=92 Identities=17% Similarity=0.180 Sum_probs=55.2
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCC-------------CccccC
Q 041567 180 NQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPF-------------SMLSKI 246 (467)
Q Consensus 180 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~-------------~~~~~~ 246 (467)
+...++.|.|.+|+|||+|+.++... ..+..=..++|++...++ .++.+-+..++-.. ..+...
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~-~~~~~ge~vlyvs~ee~~--~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYN-GLKNFGEKVLYVSFEEPP--EELIENMKSFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH-HHHHHT--EEEEESSS-H--HHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH-hhhhcCCcEEEEEecCCH--HHHHHHHHHcCCcHHHHhhcCCEEEEecccccc
Confidence 35679999999999999999887652 122212357888876543 44443333443210 000000
Q ss_pred --CCCCHHHHHHHHHHhhCC-ceEEEEEecC
Q 041567 247 --KDKDYEMKKINLGEYLMT-KWYLIVLDDV 274 (467)
Q Consensus 247 --~~~~~~~~~~~l~~~L~~-kr~LlVlDdv 274 (467)
...+.+.+...+.+.++. +...+|+|.+
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 145677888888887765 4578999987
No 363
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.75 E-value=0.03 Score=49.69 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=22.1
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..++++|+|..|+|||||+..+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 467999999999999999999987
No 364
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.75 E-value=0.022 Score=50.92 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 041567 184 VVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999984
No 365
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=94.74 E-value=0.088 Score=47.97 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=22.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSS 206 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (467)
....|+|+|.+|+|||||.+.+.+..
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcch
Confidence 46789999999999999999998853
No 366
>PRK13949 shikimate kinase; Provisional
Probab=94.74 E-value=0.024 Score=50.34 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 041567 184 VVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-|.|+|++|+||||+++.+.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999988
No 367
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.72 E-value=0.029 Score=51.17 Aligned_cols=25 Identities=12% Similarity=0.045 Sum_probs=22.7
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhc
Q 041567 180 NQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 180 ~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+..+|.|+|++|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999987
No 368
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.70 E-value=0.021 Score=49.35 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 041567 184 VVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
+|.|-|.+|+||||+|+.+.++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~ 23 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH 23 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH
Confidence 6899999999999999999984
No 369
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=94.68 E-value=0.045 Score=57.72 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=36.4
Q ss_pred CccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 159 RNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+++|.+..++.+...+.... ..-+.|+|.+|+|||++|+.+++
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~--~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPN--PQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 468999999999988776543 34567899999999999999976
No 370
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.68 E-value=0.024 Score=49.56 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=18.6
Q ss_pred EEEEECCCCChHHHHHHHHh
Q 041567 184 VVAILNSIGLDKTAFTAEAY 203 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~ 203 (467)
.|+|.|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999886
No 371
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.68 E-value=0.11 Score=53.00 Aligned_cols=95 Identities=14% Similarity=0.184 Sum_probs=55.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccC--ccc---------eEEEEEcCCCCCHHHHH-HHHHHhh-CCCCc-cccC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKH--YFD---------HLAWIPAPYHYDAYQIL-DIVTMFL-LPFSM-LSKI 246 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--~F~---------~~~wv~v~~~~~~~~~~-~il~~l~-~~~~~-~~~~ 246 (467)
.-+-++|.|-+|+|||||+..+.+...... -.| .++++-+++.....+.+ ..+..-+ ..... .-..
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 356789999999999999999987543100 012 56777888876666666 6666544 21100 0000
Q ss_pred CCCC-HHH-----HHHHHHHhhC---CceEEEEEecCC
Q 041567 247 KDKD-YEM-----KKINLGEYLM---TKWYLIVLDDVW 275 (467)
Q Consensus 247 ~~~~-~~~-----~~~~l~~~L~---~kr~LlVlDdv~ 275 (467)
.+.+ ... ..-.+.++++ ++.+||++||+-
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslT 257 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMS 257 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChH
Confidence 1111 111 1222444444 689999999993
No 372
>PRK08149 ATP synthase SpaL; Validated
Probab=94.66 E-value=0.12 Score=52.58 Aligned_cols=91 Identities=13% Similarity=0.078 Sum_probs=49.3
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCC-CCHHHHH-HHHHHhhCCCC-ccccCCCCCH------
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYH-YDAYQIL-DIVTMFLLPFS-MLSKIKDKDY------ 251 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~-~il~~l~~~~~-~~~~~~~~~~------ 251 (467)
.-..++|+|..|+|||||.+.+++... -+..+...+... -+..++. +.+........ ..-...+.+.
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 356889999999999999999987422 223333444333 2455555 55554322110 0000011111
Q ss_pred HHHHHHHHHhh--CCceEEEEEecCC
Q 041567 252 EMKKINLGEYL--MTKWYLIVLDDVW 275 (467)
Q Consensus 252 ~~~~~~l~~~L--~~kr~LlVlDdv~ 275 (467)
......+.+++ ++|.+||++||+-
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslT 251 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMT 251 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchH
Confidence 11122233333 5899999999994
No 373
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.62 E-value=0.029 Score=46.13 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=19.9
Q ss_pred EEEECCCCChHHHHHHHHhcCc
Q 041567 185 VAILNSIGLDKTAFTAEAYNSS 206 (467)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~~~ 206 (467)
|.|+|..|+|||||.+.+.+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998754
No 374
>COG1084 Predicted GTPase [General function prediction only]
Probab=94.62 E-value=0.32 Score=47.04 Aligned_cols=31 Identities=10% Similarity=0.159 Sum_probs=24.9
Q ss_pred CCCcEEEEEECCCCChHHHHHHHHhcC-cccc
Q 041567 179 PNQLSVVAILNSIGLDKTAFTAEAYNS-SYVK 209 (467)
Q Consensus 179 ~~~~~vi~I~G~gGiGKTtLA~~v~~~-~~~~ 209 (467)
+...+.|.|.|++-+|||||.+.+-.- +++.
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA 196 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVA 196 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhcCCCccC
Confidence 345789999999999999999999753 4443
No 375
>PRK14530 adenylate kinase; Provisional
Probab=94.61 E-value=0.025 Score=52.27 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=20.1
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+.|.|+|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 376
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.61 E-value=0.38 Score=50.19 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=21.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..+++|+|..|.|||||++.+..-
T Consensus 50 GEivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 50 GEIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 569999999999999999999873
No 377
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.58 E-value=0.036 Score=51.68 Aligned_cols=21 Identities=14% Similarity=0.303 Sum_probs=19.4
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 041567 184 VVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.|.|+|++|+||||+|+.+.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999987
No 378
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.52 E-value=0.05 Score=50.32 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=21.4
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.-.+++|+|..|+|||||++.+..
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 356899999999999999999965
No 379
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.51 E-value=0.031 Score=50.35 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=20.7
Q ss_pred EEEEEECCCCChHHHHHHHHhcC
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999873
No 380
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.51 E-value=0.096 Score=56.12 Aligned_cols=74 Identities=9% Similarity=0.141 Sum_probs=47.9
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCc-cceEEEEEcCCCCCHHHHH-HHHHH
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHY-FDHLAWIPAPYHYDAYQIL-DIVTM 235 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~v~~~~~~~~~~-~il~~ 235 (467)
-++++|.++.++.+...+... ..+.++|++|+||||+|+.+.+ .+... |...+++.-+ ..+...++ .++.+
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~--~l~~~~~~~~~~~~n~-~~~~~~~~~~v~~~ 89 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAE--LLPDEELEDILVYPNP-EDPNMPRIVEVPAG 89 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHH--HcCchhheeEEEEeCC-CCCchHHHHHHHHh
Confidence 356889998888777777654 2555999999999999999998 44433 3333333222 22334445 66655
Q ss_pred hhC
Q 041567 236 FLL 238 (467)
Q Consensus 236 l~~ 238 (467)
++.
T Consensus 90 ~g~ 92 (608)
T TIGR00764 90 EGR 92 (608)
T ss_pred hch
Confidence 554
No 381
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=94.51 E-value=1.7 Score=43.11 Aligned_cols=123 Identities=14% Similarity=0.089 Sum_probs=64.5
Q ss_pred hHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCcc---ce-----EEEEEcCCCCCHHHHHHHHHHhh
Q 041567 166 DRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYF---DH-----LAWIPAPYHYDAYQILDIVTMFL 237 (467)
Q Consensus 166 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~-----~~wv~v~~~~~~~~~~~il~~l~ 237 (467)
..-+++.+.+..+. -...+.+.|+.|+||+++|..+..----...- +| .-++..+.++|...+.
T Consensus 9 ~~~~~l~~~~~~~r-l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~------- 80 (334)
T PRK07993 9 PDYEQLVGSYQAGR-GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT------- 80 (334)
T ss_pred HHHHHHHHHHHcCC-cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe-------
Confidence 34456666665543 35678899999999999998876521000000 00 0011111111111000
Q ss_pred CCCCccccC-CCCCHHHHHHHHHHhh-----CCceEEEEEecCCC--cchHHHHHHhhcCCCCCcEEEEecCcc
Q 041567 238 LPFSMLSKI-KDKDYEMKKINLGEYL-----MTKWYLIVLDDVWS--TNVLDVVREILLDNQNGSRVLITLTRI 303 (467)
Q Consensus 238 ~~~~~~~~~-~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iivT~TR~ 303 (467)
|... .....+++.+ +.+.+ .+++=++|+|++.. .+.-+.+...+-....++.+|++ |.+
T Consensus 81 -----p~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~-t~~ 147 (334)
T PRK07993 81 -----PEKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLA-CRE 147 (334)
T ss_pred -----cccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEE-ECC
Confidence 0000 1133344333 33332 34666888998864 35677788877776777777766 654
No 382
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.47 E-value=0.14 Score=52.75 Aligned_cols=94 Identities=9% Similarity=0.029 Sum_probs=55.2
Q ss_pred CcEEEEEECCCCChHHHHH-HHHhcCccc-----cCccceEEEEEcCCCCCHHHHH-HHHHHhhC-CCCc-cccCCCCC-
Q 041567 181 QLSVVAILNSIGLDKTAFT-AEAYNSSYV-----KHYFDHLAWIPAPYHYDAYQIL-DIVTMFLL-PFSM-LSKIKDKD- 250 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA-~~v~~~~~~-----~~~F~~~~wv~v~~~~~~~~~~-~il~~l~~-~~~~-~~~~~~~~- 250 (467)
+-.-++|.|-.|+|||+|| -.+.|...+ .++-+.++++-+++....-.-+ +.+..-+. .... .....+.+
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 3467899999999999997 666665322 1244568888888876544435 55555442 1100 00001111
Q ss_pred ---------HHHHHHHHHHhhCCceEEEEEecCCC
Q 041567 251 ---------YEMKKINLGEYLMTKWYLIVLDDVWS 276 (467)
Q Consensus 251 ---------~~~~~~~l~~~L~~kr~LlVlDdv~~ 276 (467)
--.+.++++. +++.+|||+||+..
T Consensus 268 ~~r~~Apy~a~tiAEYFrd--~GkdVLiv~DDLTr 300 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMN--RGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHH--cCCCEEEEEcCchH
Confidence 1122344443 57999999999953
No 383
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.46 E-value=0.035 Score=50.52 Aligned_cols=24 Identities=17% Similarity=0.093 Sum_probs=21.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..+|.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999999983
No 384
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.45 E-value=0.064 Score=52.81 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 168 MEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 168 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..++.+.+.....+..+|+|.|.+|+|||||+..+..
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3456666654344678999999999999999998876
No 385
>PRK13948 shikimate kinase; Provisional
Probab=94.43 E-value=0.034 Score=49.87 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=21.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
....|.++|+.|+||||+++.+.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457889999999999999999988
No 386
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=94.43 E-value=0.062 Score=57.03 Aligned_cols=49 Identities=12% Similarity=-0.014 Sum_probs=37.9
Q ss_pred CCCCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 156 SKNRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..++..+.|.+..+.|.+..-.......+|.|+|++|+||||+|+.+..
T Consensus 366 ~~pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~ 414 (568)
T PRK05537 366 LEIPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMV 414 (568)
T ss_pred CCCChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHH
Confidence 4556667777777766665554445567999999999999999999988
No 387
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.42 E-value=0.029 Score=48.50 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=18.8
Q ss_pred EEEECCCCChHHHHHHHHhc
Q 041567 185 VAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~ 204 (467)
|.|+|++|.||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999999987
No 388
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.40 E-value=0.025 Score=49.61 Aligned_cols=20 Identities=10% Similarity=0.248 Sum_probs=18.4
Q ss_pred EEEECCCCChHHHHHHHHhc
Q 041567 185 VAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~ 204 (467)
|.|+|++|+||||+|+.+.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988
No 389
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.40 E-value=1.9 Score=44.21 Aligned_cols=72 Identities=14% Similarity=0.091 Sum_probs=44.7
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHhhC
Q 041567 163 GLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMFLL 238 (467)
Q Consensus 163 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l~~ 238 (467)
|...-...|-+++. +-.+..++.|-|.+|+|||++|..+..+...+..+ .++|++ -+.+..++. .++.....
T Consensus 176 gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~-~v~~fS--lEm~~~~l~~Rl~~~~~~ 248 (421)
T TIGR03600 176 GLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGK-PVLFFS--LEMSAEQLGERLLASKSG 248 (421)
T ss_pred ceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCC-cEEEEE--CCCCHHHHHHHHHHHHcC
Confidence 33333444444443 32345688999999999999999988642223333 355665 445777777 77766543
No 390
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.39 E-value=0.092 Score=50.45 Aligned_cols=92 Identities=14% Similarity=0.063 Sum_probs=49.1
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCcc-c-cCCCCCHHHHHHH
Q 041567 180 NQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSML-S-KIKDKDYEMKKIN 257 (467)
Q Consensus 180 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~-~-~~~~~~~~~~~~~ 257 (467)
.+..+|.|+|.+|+|||||...+.+ .........+ + .....+..+ ...++..+.+.-.. . ..-..+...+...
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~--~l~~~~~~~V-I-~gD~~t~~D-a~rI~~~g~pvvqi~tG~~Chl~a~mv~~A 176 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM--RLKDSVPCAV-I-EGDQQTVND-AARIRATGTPAIQVNTGKGCHLDAQMIADA 176 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HhccCCCEEE-E-CCCcCcHHH-HHHHHhcCCcEEEecCCCCCcCcHHHHHHH
Confidence 4689999999999999999999988 4444443322 2 122122221 13333333211000 0 0112233444555
Q ss_pred HHHhhCCceEEEEEecCCC
Q 041567 258 LGEYLMTKWYLIVLDDVWS 276 (467)
Q Consensus 258 l~~~L~~kr~LlVlDdv~~ 276 (467)
+........-+||++++.+
T Consensus 177 l~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 177 APRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHhhcCCcEEEEECCCC
Confidence 5554444456778899864
No 391
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.39 E-value=0.04 Score=47.88 Aligned_cols=46 Identities=24% Similarity=0.143 Sum_probs=32.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccc-cCccceEEEEEcCCCCCHHHHH-HHHHHhhCCC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYV-KHYFDHLAWIPAPYHYDAYQIL-DIVTMFLLPF 240 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~wv~v~~~~~~~~~~-~il~~l~~~~ 240 (467)
..++.|+|.+|+||||+.+.+.. .. ..+ -.+...+. +++...+...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~--~l~~~~-----------ivNyG~~Mle~A~k~glve 51 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK--ELVKHK-----------IVNYGDLMLEIAKKKGLVE 51 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH--HHhhce-----------eeeHhHHHHHHHHHhCCcc
Confidence 58999999999999999988776 22 111 12445666 7777776643
No 392
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=0.28 Score=52.49 Aligned_cols=94 Identities=15% Similarity=0.158 Sum_probs=61.8
Q ss_pred CccccchhHHHHHHHHHhcC---------C-CCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHH
Q 041567 159 RNTVGLDDRMEELLDLLIEG---------P-NQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQ 228 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~---------~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 228 (467)
.++-|.++.+.+|.+.+.-. + .+..=|.++|++|.|||-||++|+. +..- -|++|..+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVAT--EcsL-----~FlSVKGP----- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVAT--ECSL-----NFLSVKGP----- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHh--hcee-----eEEeecCH-----
Confidence 56778999999999876432 1 2345678999999999999999998 3332 24555443
Q ss_pred HHHHHHHhhCCCCccccCCCCCHHHHHHHHHHhhCCceEEEEEecCCC
Q 041567 229 ILDIVTMFLLPFSMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWS 276 (467)
Q Consensus 229 ~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 276 (467)
+++..--+ .+.+...+...+.-..++|.|.+|.+.+
T Consensus 740 --ELLNMYVG----------qSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 --ELLNMYVG----------QSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred --HHHHHHhc----------chHHHHHHHHHHhhccCCeEEEeccccc
Confidence 33332222 1234444444444455899999999964
No 393
>PHA02774 E1; Provisional
Probab=94.35 E-value=0.21 Score=52.25 Aligned_cols=50 Identities=16% Similarity=0.261 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcC
Q 041567 167 RMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAP 221 (467)
Q Consensus 167 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~ 221 (467)
-+..+..+|. +.++..-+.|+|++|.|||.+|..+.+ -.. -....||+..
T Consensus 420 fl~~lk~~l~-~~PKknciv~~GPP~TGKS~fa~sL~~--~L~--G~vi~fvN~~ 469 (613)
T PHA02774 420 FLTALKDFLK-GIPKKNCLVIYGPPDTGKSMFCMSLIK--FLK--GKVISFVNSK 469 (613)
T ss_pred HHHHHHHHHh-cCCcccEEEEECCCCCCHHHHHHHHHH--HhC--CCEEEEEECc
Confidence 4455555554 333456899999999999999999988 222 2234566543
No 394
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=94.35 E-value=0.065 Score=46.79 Aligned_cols=106 Identities=10% Similarity=0.079 Sum_probs=61.9
Q ss_pred EEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCccccCCCCCHHHHHHHHHHhh
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLSKIKDKDYEMKKINLGEYL 262 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 262 (467)
--+.|+|-||+||+++.+.+|.- -..+.+...+||+.-.. + + ....++....+
T Consensus 21 iK~vivGng~VGKssmiqryCkg-ifTkdykktIgvdfler----q-------i-----------~v~~Edvr~ml---- 73 (246)
T KOG4252|consen 21 IKFVIVGNGSVGKSSMIQRYCKG-IFTKDYKKTIGVDFLER----Q-------I-----------KVLIEDVRSML---- 73 (246)
T ss_pred EEEEEECCCccchHHHHHHHhcc-ccccccccccchhhhhH----H-------H-----------HhhHHHHHHHH----
Confidence 34679999999999999999973 22445667788754321 0 0 00111111111
Q ss_pred CCceEEEEEecCCCc---chHHHHHHhhcCCCCCcEEEEecCcccccccccccccccCCCChHHHHHHHHHHcCCChHHH
Q 041567 263 MTKWYLIVLDDVWST---NVLDVVREILLDNQNGSRVLITLTRIKMVTRFQFENGESVRLDLVPTGGPLRVTYQGWPFLI 339 (467)
Q Consensus 263 ~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iivT~TR~~~v~~~~F~~~~~~~~~~~~~~~~i~~~c~GlPLai 339 (467)
|+. ++.+.|..+.-.+.+.|.++.. |.+. .......+.-+++.+.|+.+|+.+
T Consensus 74 ------------WdtagqeEfDaItkAyyrgaqa~vLVFS-TTDr-----------~SFea~~~w~~kv~~e~~~IPtV~ 129 (246)
T KOG4252|consen 74 ------------WDTAGQEEFDAITKAYYRGAQASVLVFS-TTDR-----------YSFEATLEWYNKVQKETERIPTVF 129 (246)
T ss_pred ------------HHhccchhHHHHHHHHhccccceEEEEe-cccH-----------HHHHHHHHHHHHHHHHhccCCeEE
Confidence 222 4566676665566666666655 4322 112233456778888899998754
No 395
>PRK14527 adenylate kinase; Provisional
Probab=94.31 E-value=0.036 Score=50.13 Aligned_cols=24 Identities=21% Similarity=0.165 Sum_probs=21.7
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|.|+|.+|+||||+|+.+.+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999986
No 396
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=94.31 E-value=0.47 Score=52.86 Aligned_cols=155 Identities=13% Similarity=0.090 Sum_probs=80.1
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHhhCCCCccccCCCCCHHHHHHHHH
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMFLLPFSMLSKIKDKDYEMKKINLG 259 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l~~~~~~~~~~~~~~~~~~~~~l~ 259 (467)
..+++.|.|+...||||+.+.+.--. +- .....+|++.. ..-.++ .|...++..++... ...+...-...+.
T Consensus 591 ~~~~~iITGPNmgGKSt~lrqvali~-im--Aq~G~~VPA~~--a~i~~~D~Iftrig~~d~i~~--g~STF~~Em~e~a 663 (840)
T TIGR01070 591 NRRMLLITGPNMGGKSTYMRQTALIA-LL--AQIGSFVPAES--AELPLFDRIFTRIGASDDLAS--GRSTFMVEMTEAA 663 (840)
T ss_pred CccEEEEECCCCCCchHHHHHHHHHH-HH--HhcCCCccchh--eEeccccEEEEecCcccchhc--CcchHHHHHHHHH
Confidence 45789999999999999998876421 00 00111222221 001111 22222222221111 1112222233344
Q ss_pred HhhC--CceEEEEEecCCCc-ch------HHHHHHhhcCCCCCcEEEEecCccccccc-cc-------------------
Q 041567 260 EYLM--TKWYLIVLDDVWST-NV------LDVVREILLDNQNGSRVLITLTRIKMVTR-FQ------------------- 310 (467)
Q Consensus 260 ~~L~--~kr~LlVlDdv~~~-~~------~~~l~~~l~~~~~gs~iivT~TR~~~v~~-~~------------------- 310 (467)
..|+ +++-|+++|.+... +. ...+...+.. ..|+++++| |....+.. ..
T Consensus 664 ~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~-~~~~~~~~~-TH~~eL~~l~~~~~~v~n~~~~~~~~~~~l 741 (840)
T TIGR01070 664 NILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHE-HIRAKTLFA-THYFELTALEESLPGLKNVHVAALEHNGTI 741 (840)
T ss_pred HHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHh-cCCCEEEEE-cCchHHHHHhhhCCCeEEEEEEEEEECCcE
Confidence 4443 57899999999643 11 2223344433 257899999 98876554 21
Q ss_pred -ccccccCCCChHHHHHHHHHHcCCChHHHHHHHhc
Q 041567 311 -FENGESVRLDLVPTGGPLRVTYQGWPFLILYHGSI 345 (467)
Q Consensus 311 -F~~~~~~~~~~~~~~~~i~~~c~GlPLai~~i~~~ 345 (467)
|.........-...|-++++.+ |+|-.+.--|.-
T Consensus 742 ~flYkl~~G~~~~Sygi~VA~la-GlP~~VI~rA~~ 776 (840)
T TIGR01070 742 VFLHQVLPGPASKSYGLAVAALA-GLPKEVIARARQ 776 (840)
T ss_pred EEEEEECCCCCCCcHHHHHHHHc-CCCHHHHHHHHH
Confidence 2222112223356777887776 789887665543
No 397
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.29 E-value=0.34 Score=46.23 Aligned_cols=118 Identities=18% Similarity=0.074 Sum_probs=76.7
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHH
Q 041567 157 KNRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTM 235 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~ 235 (467)
..+.|+|-... .++..++.......+...++|+.|+|||+-++.+++. .+..+-+..+..++...+. .+...
T Consensus 70 ~~~~~l~tkt~-r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~ 142 (297)
T COG2842 70 LAPDFLETKTV-RRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAA 142 (297)
T ss_pred ccccccccchh-HhHhhhhhhhhhcCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHH
Confidence 34556665443 2334444443334458899999999999999998883 2334445667777777666 55555
Q ss_pred hhCCCCccccCCCCCHHHHHHHHHHhhCCceEEEEEecCCCc--chHHHHHHhhc
Q 041567 236 FLLPFSMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWST--NVLDVVREILL 288 (467)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~ 288 (467)
..... ..........+...+.+..-+++.|+...- ..++.++....
T Consensus 143 ~~~~~-------~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d 190 (297)
T COG2842 143 AFGAT-------DGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHD 190 (297)
T ss_pred Hhccc-------chhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHH
Confidence 55432 234456677777778888889999988653 56666665543
No 398
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.29 E-value=0.19 Score=47.94 Aligned_cols=97 Identities=11% Similarity=0.036 Sum_probs=51.5
Q ss_pred cEEEEEECCCCChHHHHH-HHHhcCccccCccceE-EEEEcCCCCC-HHHHH-HHHHHhhCCCC-ccccCCCCCH-----
Q 041567 182 LSVVAILNSIGLDKTAFT-AEAYNSSYVKHYFDHL-AWIPAPYHYD-AYQIL-DIVTMFLLPFS-MLSKIKDKDY----- 251 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~~-~wv~v~~~~~-~~~~~-~il~~l~~~~~-~~~~~~~~~~----- 251 (467)
-+-++|.|..|+|||+|| ..+.+. . +-+.+ +++-+++... ..++. .+...-..... ..-...+.+.
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~--~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQ--K--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHh--c--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 467899999999999996 666652 1 23444 6666766643 33444 44432111100 0000011111
Q ss_pred -----HHHHHHHHHhhCCceEEEEEecCCCc-chHHHHH
Q 041567 252 -----EMKKINLGEYLMTKWYLIVLDDVWST-NVLDVVR 284 (467)
Q Consensus 252 -----~~~~~~l~~~L~~kr~LlVlDdv~~~-~~~~~l~ 284 (467)
-..+++++. +++.+||++||+-.- ..+.++.
T Consensus 145 a~~~a~aiAE~fr~--~G~~Vlvl~DslTr~A~A~rEis 181 (274)
T cd01132 145 APYTGCAMGEYFMD--NGKHALIIYDDLSKQAVAYRQMS 181 (274)
T ss_pred HHHHHHHHHHHHHH--CCCCEEEEEcChHHHHHHHHHHH
Confidence 122344433 579999999999432 3444443
No 399
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.28 E-value=0.04 Score=48.07 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=24.5
Q ss_pred EEEEECCCCChHHHHHHHHhcCccccC-ccceEEEE
Q 041567 184 VVAILNSIGLDKTAFTAEAYNSSYVKH-YFDHLAWI 218 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~wv 218 (467)
|++|+|..|+|||||+..+.. ..+. .+...+.-
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~--~l~~~G~~V~viK 34 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVK--ALKARGYRVATIK 34 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEe
Confidence 588999999999999999998 3332 35444443
No 400
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.28 E-value=0.21 Score=54.21 Aligned_cols=48 Identities=13% Similarity=0.085 Sum_probs=37.2
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
-+.++|....+.++.+.+..-.....-|.|+|..|+||+++|+.+.+.
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 346889998888888777643222344779999999999999999874
No 401
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=94.27 E-value=1.4 Score=41.20 Aligned_cols=99 Identities=16% Similarity=0.194 Sum_probs=57.1
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcC-CCCCHHHHH-HHHHHhhCCCCccccCCCCCHHHHHHHH
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAP-YHYDAYQIL-DIVTMFLLPFSMLSKIKDKDYEMKKINL 258 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~-~~~~~~~~~-~il~~l~~~~~~~~~~~~~~~~~~~~~l 258 (467)
+..++.++|.-|.|||.+.+.+... ..+ +.++=|.++ +..+...+. .|...+..+.. ..-....+.....+
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s--~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~---~~~~~~~e~~~~~L 122 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLAS--LNE--DQVAVVVIDKPTLSDATLLEAIVADLESQPK---VNVNAVLEQIDREL 122 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHh--cCC--CceEEEEecCcchhHHHHHHHHHHHhccCcc---chhHHHHHHHHHHH
Confidence 4679999999999999999944431 111 111223333 334566667 88877776221 11111233444444
Q ss_pred HHhh-CCce-EEEEEecCCCc--chHHHHHHh
Q 041567 259 GEYL-MTKW-YLIVLDDVWST--NVLDVVREI 286 (467)
Q Consensus 259 ~~~L-~~kr-~LlVlDdv~~~--~~~~~l~~~ 286 (467)
.... +++| ..++.|+.... +..+.++..
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll 154 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLL 154 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHH
Confidence 4444 4577 89999998654 455555443
No 402
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.26 E-value=0.16 Score=51.83 Aligned_cols=46 Identities=15% Similarity=0.132 Sum_probs=31.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCC-CHHHHH
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHY-DAYQIL 230 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~ 230 (467)
.-..++|+|..|+|||||++.+.+.. +.+..++..+++.. .+.+++
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl 200 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFI 200 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHH
Confidence 35688999999999999999998732 23445555555433 344555
No 403
>PRK13975 thymidylate kinase; Provisional
Probab=94.26 E-value=0.037 Score=50.13 Aligned_cols=22 Identities=14% Similarity=-0.003 Sum_probs=20.8
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~ 24 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAE 24 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999998
No 404
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.25 E-value=0.052 Score=48.95 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=22.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
+..+|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4678999999999999999999873
No 405
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.24 E-value=0.095 Score=48.32 Aligned_cols=87 Identities=14% Similarity=0.125 Sum_probs=48.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCC-CHHHHH-HHHHHhhCCCC-ccccCCCCCH-------
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHY-DAYQIL-DIVTMFLLPFS-MLSKIKDKDY------- 251 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~-~il~~l~~~~~-~~~~~~~~~~------- 251 (467)
-.-++|.|.+|+|||+|+..+.++. .-+..+++-+++.. ...++. ++...-..... ......+.+.
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 3578899999999999999998842 22344777777653 233344 33222010000 0000111111
Q ss_pred ---HHHHHHHHHhhCCceEEEEEecC
Q 041567 252 ---EMKKINLGEYLMTKWYLIVLDDV 274 (467)
Q Consensus 252 ---~~~~~~l~~~L~~kr~LlVlDdv 274 (467)
-...++++. +++.+|+++||+
T Consensus 91 ~~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 91 YTALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHH--TTSEEEEEEETH
T ss_pred ccchhhhHHHhh--cCCceeehhhhh
Confidence 112333444 689999999998
No 406
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.22 E-value=0.034 Score=49.20 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=18.1
Q ss_pred EEEECCCCChHHHHHHHHhcC
Q 041567 185 VAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~~ 205 (467)
|.|.|.+|+|||||.+.+++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 679999999999999999873
No 407
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=94.22 E-value=0.69 Score=50.90 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=22.2
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
+-..++|+|..|.|||||++.+..-
T Consensus 506 ~Ge~vaIvG~SGsGKSTLl~lL~gl 530 (711)
T TIGR00958 506 PGEVVALVGPSGSGKSTVAALLQNL 530 (711)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4679999999999999999999763
No 408
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=94.19 E-value=0.49 Score=42.86 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 041567 184 VVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.|+++|.+|+|||||...+...
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~ 23 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGR 23 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCC
Confidence 4789999999999999999875
No 409
>PRK06761 hypothetical protein; Provisional
Probab=94.18 E-value=0.084 Score=50.67 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=21.4
Q ss_pred EEEEEECCCCChHHHHHHHHhcC
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
++|.|.|++|+||||+++.+++.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~ 26 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDI 26 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999984
No 410
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.17 E-value=0.035 Score=48.10 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=19.4
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 041567 184 VVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+|.|+|.+|+||||||+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 411
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=94.17 E-value=0.14 Score=52.16 Aligned_cols=40 Identities=8% Similarity=-0.048 Sum_probs=28.0
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHY 224 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~ 224 (467)
.-..++|.|..|+|||||++.+..... -+..+..-+++..
T Consensus 156 ~Gq~~~i~G~sG~GKStLl~~i~~~~~----~~v~vi~~iGerg 195 (434)
T PRK08472 156 KGQKLGIFAGSGVGKSTLMGMIVKGCL----APIKVVALIGERG 195 (434)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccC----CCEEEEEeeCccc
Confidence 356889999999999999999987321 2344444455444
No 412
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.17 E-value=0.17 Score=51.62 Aligned_cols=91 Identities=16% Similarity=0.063 Sum_probs=50.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCC-HHHHH-HHHHHhhCCCCc-cccCCCCCH-HH---
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYD-AYQIL-DIVTMFLLPFSM-LSKIKDKDY-EM--- 253 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~-~il~~l~~~~~~-~~~~~~~~~-~~--- 253 (467)
.-..++|+|..|+|||||++.+.+... -+..+++-+++... ..++. ..+..-+..... .-...+.+. ..
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 457889999999999999999997422 23455566665543 33444 444432211000 000111111 11
Q ss_pred --HHHHHHHhh--CCceEEEEEecCC
Q 041567 254 --KKINLGEYL--MTKWYLIVLDDVW 275 (467)
Q Consensus 254 --~~~~l~~~L--~~kr~LlVlDdv~ 275 (467)
..-.+.+++ +++.+||++||+-
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslT 258 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcH
Confidence 112233333 5899999999994
No 413
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.14 E-value=0.078 Score=51.74 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 169 EELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 169 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..+++.+........+|+|.|.+|+|||||+..+...
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 3444444443446889999999999999999988763
No 414
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.14 E-value=0.048 Score=48.85 Aligned_cols=43 Identities=9% Similarity=0.036 Sum_probs=29.3
Q ss_pred EEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH
Q 041567 184 VVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL 230 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 230 (467)
++.|.|.+|+|||+|+.++... ....=..++|++...+ ..++.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~--~~~~g~~v~~~s~e~~--~~~~~ 43 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYA--GLARGEPGLYVTLEES--PEELI 43 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCC--HHHHH
Confidence 3679999999999999988763 2122245778876543 44444
No 415
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.2 Score=47.65 Aligned_cols=92 Identities=20% Similarity=0.257 Sum_probs=59.4
Q ss_pred CccccchhHHHHHHHHHh---------cC-CCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHH
Q 041567 159 RNTVGLDDRMEELLDLLI---------EG-PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQ 228 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~---------~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 228 (467)
+++-|.+..++.|.+... .+ ....+-|.++|++|.||+-||+.|... ....| .+||.+
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE--AnSTF-----FSvSSS----- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE--ANSTF-----FSVSSS----- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh--cCCce-----EEeehH-----
Confidence 457788888888877542 22 234788999999999999999999984 22333 344433
Q ss_pred HHHHHHHhhCCCCccccCCCCCHHHHHHHHHHhhC-CceEEEEEecCC
Q 041567 229 ILDIVTMFLLPFSMLSKIKDKDYEMKKINLGEYLM-TKWYLIVLDDVW 275 (467)
Q Consensus 229 ~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~ 275 (467)
+++..-.+ ..+.+...|.+.-+ +|+..|.+|.+.
T Consensus 201 --DLvSKWmG-----------ESEkLVknLFemARe~kPSIIFiDEiD 235 (439)
T KOG0739|consen 201 --DLVSKWMG-----------ESEKLVKNLFEMARENKPSIIFIDEID 235 (439)
T ss_pred --HHHHHHhc-----------cHHHHHHHHHHHHHhcCCcEEEeehhh
Confidence 22222222 12445555555543 588999999985
No 416
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.12 E-value=0.2 Score=54.08 Aligned_cols=51 Identities=20% Similarity=0.272 Sum_probs=36.3
Q ss_pred CCCCccccchhHHH---HHHHHHhcCC-------CCcEEEEEECCCCChHHHHHHHHhcCc
Q 041567 156 SKNRNTVGLDDRME---ELLDLLIEGP-------NQLSVVAILNSIGLDKTAFTAEAYNSS 206 (467)
Q Consensus 156 ~~~~~~vGr~~~~~---~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (467)
+.-.++.|-++.++ +++++|.++. .-++=+.++|++|.|||-||++++..+
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA 368 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 368 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc
Confidence 34456788766555 5555665541 235567899999999999999999843
No 417
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=94.10 E-value=2.1 Score=44.09 Aligned_cols=66 Identities=17% Similarity=0.194 Sum_probs=41.2
Q ss_pred HHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHhh
Q 041567 168 MEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMFL 237 (467)
Q Consensus 168 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l~ 237 (467)
...|-+.+ .+=.+..++.|-|.+|+|||+++..+..+....... .++|++.. -+..++. .++....
T Consensus 182 ~~~LD~~~-~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~-~vl~~SlE--m~~~~i~~R~~~~~~ 248 (434)
T TIGR00665 182 FTDLDKLT-SGLQPSDLIILAARPSMGKTAFALNIAENAAIKEGK-PVAFFSLE--MSAEQLAMRMLSSES 248 (434)
T ss_pred chhhHhhc-CCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCC-eEEEEeCc--CCHHHHHHHHHHHhc
Confidence 34443433 232345789999999999999999887642222222 45666544 4667777 6665543
No 418
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.08 E-value=0.042 Score=48.85 Aligned_cols=23 Identities=9% Similarity=0.195 Sum_probs=20.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...|.|+|+.|.||||+++.+.+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHH
Confidence 34689999999999999999997
No 419
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.07 E-value=0.1 Score=47.11 Aligned_cols=22 Identities=14% Similarity=0.063 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 041567 184 VVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
+|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~ 23 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAER 23 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 420
>PRK13946 shikimate kinase; Provisional
Probab=94.05 E-value=0.043 Score=49.38 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=21.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+.|.++|++|+||||+++.+.+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~ 32 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLAT 32 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999998
No 421
>PLN02200 adenylate kinase family protein
Probab=94.04 E-value=0.046 Score=51.21 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=21.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|.|.|++|+||||+|+.+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 422
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.03 E-value=0.43 Score=44.31 Aligned_cols=118 Identities=13% Similarity=0.070 Sum_probs=57.4
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHhhCCCCccccCCCCCHHHHHHHHHH
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMFLLPFSMLSKIKDKDYEMKKINLGE 260 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l~~~~~~~~~~~~~~~~~~~~~l~~ 260 (467)
..++.|.|..|.||||+.+.+.... +..+-.+.+|-.- .. -..+ .|+..++..+.... .......-...+..
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~-~la~~G~~v~a~~---~~-~~~~~~i~~~~~~~d~~~~--~~StF~~e~~~~~~ 103 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALIT-IMAQIGSFVPASS---AT-LSIFDSVLTRMGASDSIQH--GMSTFMVELSETSH 103 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHhCCCEEEcCc---eE-EeccceEEEEecCcccccc--ccchHHHHHHHHHH
Confidence 5688999999999999998886621 1111011111100 00 0011 11112221111100 11122222333444
Q ss_pred hhC--CceEEEEEecCCCcc------h-HHHHHHhhcCCCCCcEEEEecCccccccc
Q 041567 261 YLM--TKWYLIVLDDVWSTN------V-LDVVREILLDNQNGSRVLITLTRIKMVTR 308 (467)
Q Consensus 261 ~L~--~kr~LlVlDdv~~~~------~-~~~l~~~l~~~~~gs~iivT~TR~~~v~~ 308 (467)
.++ +++-|++||...... . ...+...+... .++.+|++ |....++.
T Consensus 104 il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~-TH~~~l~~ 158 (222)
T cd03287 104 ILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFV-THYPSLGE 158 (222)
T ss_pred HHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEE-cccHHHHH
Confidence 443 478999999984321 1 12233344333 47889999 88876654
No 423
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.03 E-value=0.051 Score=44.02 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=20.0
Q ss_pred cEEEEEECCCCChHHHHHHHHh
Q 041567 182 LSVVAILNSIGLDKTAFTAEAY 203 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~ 203 (467)
-..++|+|..|.|||||+..+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999976
No 424
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=94.02 E-value=0.18 Score=49.51 Aligned_cols=41 Identities=12% Similarity=0.199 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHhcCC-CCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 165 DDRMEELLDLLIEGP-NQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 165 ~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
+.-.+.|.+.|.+.+ ....+|+|.|.=|+||||+.+.+.+.
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 445567778777653 57889999999999999999999883
No 425
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.01 E-value=0.54 Score=50.49 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=21.8
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+-..++|+|..|.|||||++.+..
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g 398 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLG 398 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999999976
No 426
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.01 E-value=0.16 Score=49.68 Aligned_cols=65 Identities=6% Similarity=-0.025 Sum_probs=43.4
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH
Q 041567 157 KNRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL 230 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 230 (467)
.++.++=..+....++..|..+ +.|.|.|.+|+||||+|+.+.. +....| +-|..+...+..++.
T Consensus 43 ~d~~y~f~~~~~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~--~l~~~~---~rV~~~~~l~~~Dli 107 (327)
T TIGR01650 43 IDPAYLFDKATTKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAA--RLNWPC---VRVNLDSHVSRIDLV 107 (327)
T ss_pred CCCCccCCHHHHHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHH--HHCCCe---EEEEecCCCChhhcC
Confidence 3444555555566677777543 3588999999999999999988 444333 355666665555555
No 427
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.00 E-value=0.17 Score=47.95 Aligned_cols=80 Identities=15% Similarity=0.042 Sum_probs=43.4
Q ss_pred EEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCC--HHHHH-HHHHHhhC--CCCccccCCCCCHHHHHHHH
Q 041567 184 VVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYD--AYQIL-DIVTMFLL--PFSMLSKIKDKDYEMKKINL 258 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~--~~~~~-~il~~l~~--~~~~~~~~~~~~~~~~~~~l 258 (467)
+|+|.|.+|+||||+++.+.+. .+..=..+..++...-+. -...- .+...... +-+. -+.+..+.+.+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~--l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdH-f~PeAnd~dlL~~~l 77 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHI--FAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSH-FGPEANLFDLLEELF 77 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHH--HHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCC-CCcccccHHHHHHHH
Confidence 5899999999999999988862 222111234444333222 11221 22222211 1110 013556777888888
Q ss_pred HHhhCCce
Q 041567 259 GEYLMTKW 266 (467)
Q Consensus 259 ~~~L~~kr 266 (467)
+...+++.
T Consensus 78 ~~L~~g~~ 85 (277)
T cd02029 78 RTYGETGR 85 (277)
T ss_pred HHHHcCCC
Confidence 88777653
No 428
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.96 E-value=0.25 Score=48.53 Aligned_cols=88 Identities=11% Similarity=0.024 Sum_probs=47.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCC-CCHHHHH-HHHHHhhCCCCc-cccCCCCCH-------
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYH-YDAYQIL-DIVTMFLLPFSM-LSKIKDKDY------- 251 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~-~il~~l~~~~~~-~~~~~~~~~------- 251 (467)
...++|+|..|.|||||.+.+.+.. . -+..+..-++.. -+..++. ..+..-...... .....+.+.
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~--~--~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGT--T--ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCC--C--CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 4678999999999999999998742 2 123333444432 3445555 554432211000 000011111
Q ss_pred ---HHHHHHHHHhhCCceEEEEEecCC
Q 041567 252 ---EMKKINLGEYLMTKWYLIVLDDVW 275 (467)
Q Consensus 252 ---~~~~~~l~~~L~~kr~LlVlDdv~ 275 (467)
-..+++++. ++|.+||++||+-
T Consensus 145 ~~a~~~AEyfr~--~g~~Vll~~Dslt 169 (326)
T cd01136 145 YTATAIAEYFRD--QGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHHHHHH--cCCCeEEEeccch
Confidence 112333333 5899999999983
No 429
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=93.95 E-value=0.7 Score=50.83 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=21.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.-..++|+|..|+|||||++.+..
T Consensus 499 ~G~~vaIvG~SGsGKSTLlklL~g 522 (708)
T TIGR01193 499 MNSKTTIVGMSGSGKSTLAKLLVG 522 (708)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999999965
No 430
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=93.94 E-value=0.33 Score=50.55 Aligned_cols=47 Identities=13% Similarity=0.129 Sum_probs=37.3
Q ss_pred CccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 159 RNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..++|......++.+.+..-......+.|.|.+|+|||++|+.+.+.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 46899988888888777543333456789999999999999999884
No 431
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.94 E-value=0.54 Score=46.35 Aligned_cols=45 Identities=18% Similarity=0.136 Sum_probs=33.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCC-HHHHH
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYD-AYQIL 230 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~ 230 (467)
-..++|.|..|+|||+|++.+.+.. +-+.++++-+++..+ +.+++
T Consensus 157 Gqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l 202 (369)
T cd01134 157 GGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVL 202 (369)
T ss_pred CCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHH
Confidence 4588999999999999999999842 335688888877543 33444
No 432
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.91 E-value=0.1 Score=45.58 Aligned_cols=36 Identities=22% Similarity=0.367 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 165 DDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 165 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.+.+++|.+.|.. +++.++|..|+|||||...+..+
T Consensus 23 ~~g~~~l~~~l~~-----k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 23 GEGIEELKELLKG-----KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTTHHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CcCHHHHHHHhcC-----CEEEEECCCCCCHHHHHHHHHhh
Confidence 3456777777753 68999999999999999999985
No 433
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.89 E-value=0.11 Score=55.81 Aligned_cols=76 Identities=12% Similarity=0.081 Sum_probs=54.0
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHH
Q 041567 157 KNRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTM 235 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~ 235 (467)
.-++++|.++.++.|...+... +.+.++|.+|+||||+|+.+.+.. -..+|+..+|..-+ ..+...++ .++.+
T Consensus 29 ~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~np-~~~~~~~~~~v~~~ 102 (637)
T PRK13765 29 LIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPNP-EDPNNPKIRTVPAG 102 (637)
T ss_pred cHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeCC-CcchHHHHHHHHHh
Confidence 3456899988888888777654 368899999999999999998731 22345777886553 33555666 66665
Q ss_pred hhC
Q 041567 236 FLL 238 (467)
Q Consensus 236 l~~ 238 (467)
++.
T Consensus 103 ~G~ 105 (637)
T PRK13765 103 KGK 105 (637)
T ss_pred cCH
Confidence 554
No 434
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.89 E-value=0.054 Score=49.73 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=23.1
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhc
Q 041567 180 NQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 180 ~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.++++|+++|..|+|||||..++.+
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999999987
No 435
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=93.86 E-value=0.056 Score=46.90 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q 041567 184 VVAILNSIGLDKTAFTAEAYNSS 206 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~ 206 (467)
-|+++|.+|+|||||+..+.++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
No 436
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.84 E-value=0.16 Score=49.66 Aligned_cols=93 Identities=14% Similarity=0.063 Sum_probs=48.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCccccCCCCCHHHHHHHHHHh
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLSKIKDKDYEMKKINLGEY 261 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (467)
...+.|+|..|.|||||++.+... +.... .++.+.-..+..... -... ++..... ......-...+.+...
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~--~~~~~-~iv~ied~~El~~~~-~~~~-~l~~~~~----~~~~~~~~~~~~l~~~ 214 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDE--IPKDE-RIITIEDTREIFLPH-PNYV-HLFYSKG----GQGLAKVTPKDLLQSC 214 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcc--CCccc-cEEEEcCccccCCCC-CCEE-EEEecCC----CCCcCccCHHHHHHHH
Confidence 468999999999999999998873 32221 122221111111000 0000 0000000 0011112334556667
Q ss_pred hCCceEEEEEecCCCcchHHHH
Q 041567 262 LMTKWYLIVLDDVWSTNVLDVV 283 (467)
Q Consensus 262 L~~kr~LlVlDdv~~~~~~~~l 283 (467)
|+..+=.|++|.+.+.+.++.+
T Consensus 215 Lr~~pd~ii~gE~r~~e~~~~l 236 (308)
T TIGR02788 215 LRMRPDRIILGELRGDEAFDFI 236 (308)
T ss_pred hcCCCCeEEEeccCCHHHHHHH
Confidence 7778888999999887666543
No 437
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.84 E-value=0.21 Score=51.16 Aligned_cols=94 Identities=11% Similarity=0.126 Sum_probs=52.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCC-HHHHH-HHHHHhhCCCCc-cccCCCCCHHH----
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYD-AYQIL-DIVTMFLLPFSM-LSKIKDKDYEM---- 253 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~-~il~~l~~~~~~-~~~~~~~~~~~---- 253 (467)
.-.-++|.|.+|+|||||+..+....... +=+.++++-+++... +.++. .++..-...... .-...+.+...
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 35678999999999999999886632111 113567777766543 44455 555432111000 00011111111
Q ss_pred --HHHHHHHhh---CCceEEEEEecCC
Q 041567 254 --KKINLGEYL---MTKWYLIVLDDVW 275 (467)
Q Consensus 254 --~~~~l~~~L---~~kr~LlVlDdv~ 275 (467)
..-.+.+++ +++.+||++||+-
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchH
Confidence 122344555 6799999999994
No 438
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.83 E-value=0.082 Score=48.08 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=21.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.-.|++|+|++|+|||||.+.+..
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Confidence 356999999999999999999876
No 439
>PRK08356 hypothetical protein; Provisional
Probab=93.83 E-value=0.061 Score=48.87 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=19.8
Q ss_pred cEEEEEECCCCChHHHHHHHHh
Q 041567 182 LSVVAILNSIGLDKTAFTAEAY 203 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~ 203 (467)
..+|+|+|++|+||||+|+.+-
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999993
No 440
>PRK04182 cytidylate kinase; Provisional
Probab=93.81 E-value=0.049 Score=48.41 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 041567 184 VVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKstia~~la~ 22 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999987
No 441
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=93.81 E-value=0.046 Score=50.32 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=21.1
Q ss_pred EEEEEECCCCChHHHHHHHHhcC
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.-|+|+|.+|+|||||+..+.++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~ 28 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD 28 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcC
Confidence 56889999999999999999986
No 442
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=93.80 E-value=0.052 Score=49.47 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=20.7
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+|+|+|+.|+||||+|+.+-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999998876
No 443
>PRK13409 putative ATPase RIL; Provisional
Probab=93.80 E-value=0.56 Score=50.27 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.7
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
-.+++|+|..|+|||||++.++..
T Consensus 365 Geiv~l~G~NGsGKSTLlk~L~Gl 388 (590)
T PRK13409 365 GEVIGIVGPNGIGKTTFAKLLAGV 388 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999873
No 444
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.79 E-value=0.045 Score=48.09 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=17.1
Q ss_pred EEEECCCCChHHHHHHHHhc
Q 041567 185 VAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~ 204 (467)
|+|.|..|+|||||++.+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~ 21 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAA 21 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999997
No 445
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.75 E-value=0.48 Score=52.22 Aligned_cols=115 Identities=14% Similarity=0.217 Sum_probs=68.7
Q ss_pred CccccchhHHHHHHHHHhcC-----C-CCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHH
Q 041567 159 RNTVGLDDRMEELLDLLIEG-----P-NQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDI 232 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~-----~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~i 232 (467)
..++|-++.+..|.+.+... + .+...+.+.|+.|+|||-||+.+.. -+-+..+..+-++.|. ..++
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse------~~ev 633 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSE------FQEV 633 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhh------hhhh
Confidence 45777788888888777643 1 2567888999999999999999987 4444444455554443 1121
Q ss_pred HHHhhCCCCccccCCCCCHHHHHHHHHHhhCCceE-EEEEecCCCc--chHHHHHHhhc
Q 041567 233 VTMFLLPFSMLSKIKDKDYEMKKINLGEYLMTKWY-LIVLDDVWST--NVLDVVREILL 288 (467)
Q Consensus 233 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~-LlVlDdv~~~--~~~~~l~~~l~ 288 (467)
.+-++.+. .... .+...+|-+.++.++| +|+||||... .....+...+.
T Consensus 634 skligsp~----gyvG---~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD 685 (898)
T KOG1051|consen 634 SKLIGSPP----GYVG---KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLD 685 (898)
T ss_pred hhccCCCc----cccc---chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHh
Confidence 12222211 1111 2233467777777776 5668999755 34444444443
No 446
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=93.75 E-value=0.32 Score=51.18 Aligned_cols=104 Identities=12% Similarity=0.073 Sum_probs=62.0
Q ss_pred HHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCC------
Q 041567 168 MEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFS------ 241 (467)
Q Consensus 168 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~------ 241 (467)
...|-+.|..+=....++.|.|.+|+|||+|+..+..+ ....-..++|++.... ..++..-+..++.+..
T Consensus 259 i~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~--~~~~g~~~~yis~e~~--~~~i~~~~~~~g~~~~~~~~~g 334 (509)
T PRK09302 259 VPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEA--ACRRGERCLLFAFEES--RAQLIRNARSWGIDLEKMEEKG 334 (509)
T ss_pred cHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecCC--HHHHHHHHHHcCCChHHHhhcC
Confidence 34455555434344678999999999999999998873 2233457888887654 4444433344442110
Q ss_pred c----cccCCCCCHHHHHHHHHHhhCC-ceEEEEEecCC
Q 041567 242 M----LSKIKDKDYEMKKINLGEYLMT-KWYLIVLDDVW 275 (467)
Q Consensus 242 ~----~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~ 275 (467)
. .........++....+...+.. +.-++|+|.+.
T Consensus 335 ~l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt 373 (509)
T PRK09302 335 LLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLS 373 (509)
T ss_pred CceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 0 0011223445666666666644 55589999984
No 447
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.74 E-value=0.34 Score=49.30 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=22.0
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.-..++|+|..|.|||||.+.+.+.
T Consensus 136 ~Gqri~I~G~sG~GKTtLl~~i~~~ 160 (413)
T TIGR03497 136 KGQRVGIFAGSGVGKSTLLGMIARN 160 (413)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999988873
No 448
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.74 E-value=0.21 Score=50.92 Aligned_cols=94 Identities=11% Similarity=0.060 Sum_probs=50.2
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHhhCCCCc-cccCCCCCH------H
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMFLLPFSM-LSKIKDKDY------E 252 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l~~~~~~-~~~~~~~~~------~ 252 (467)
.-..++|+|..|.|||||++.++.... ....++...-.+.....+++ ..+..-+..... .......+. .
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAK---ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCC---CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 356889999999999999999987422 12223332222335566666 555442211100 000011111 1
Q ss_pred HHHHHHHHhh--CCceEEEEEecCCCc
Q 041567 253 MKKINLGEYL--MTKWYLIVLDDVWST 277 (467)
Q Consensus 253 ~~~~~l~~~L--~~kr~LlVlDdv~~~ 277 (467)
.....+.+++ +++..||++||+-.-
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchHHH
Confidence 1122233333 479999999999543
No 449
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.73 E-value=0.28 Score=50.05 Aligned_cols=89 Identities=13% Similarity=0.041 Sum_probs=51.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCC-HHHHH-HHHHHhhCCCC-ccccCCCCCHH-----
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYD-AYQIL-DIVTMFLLPFS-MLSKIKDKDYE----- 252 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~-~il~~l~~~~~-~~~~~~~~~~~----- 252 (467)
+-..++|.|..|+|||||.+.+++.. .-+.++++-+++... ..++. ..+..-+.... ..-...+.+.-
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSA----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCC----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 35689999999999999999999842 225677777776543 33333 33322111100 00011111111
Q ss_pred -----HHHHHHHHhhCCceEEEEEecCC
Q 041567 253 -----MKKINLGEYLMTKWYLIVLDDVW 275 (467)
Q Consensus 253 -----~~~~~l~~~L~~kr~LlVlDdv~ 275 (467)
.++++++. +++++||++||+-
T Consensus 237 ~~~a~tiAEyfrd--~G~~Vll~~DslT 262 (439)
T PRK06936 237 GFVATSIAEYFRD--QGKRVLLLMDSVT 262 (439)
T ss_pred HHHHHHHHHHHHH--cCCCEEEeccchh
Confidence 12333443 5899999999994
No 450
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.72 E-value=0.26 Score=50.11 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=21.5
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
-..++|+|..|+|||||++.+...
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~ 163 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARN 163 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCC
Confidence 468999999999999999988873
No 451
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.71 E-value=0.05 Score=46.06 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=21.5
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
-.+++|+|..|+|||||.+.+...
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEEccCCCccccceeeeccc
Confidence 458999999999999999999874
No 452
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.71 E-value=0.065 Score=52.34 Aligned_cols=46 Identities=11% Similarity=0.026 Sum_probs=30.4
Q ss_pred EEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL 230 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 230 (467)
+++.+.|-||+||||+|....-...-++ ..+.-++.....++.+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccHHHHh
Confidence 5789999999999999977765311111 235566666665555555
No 453
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=93.70 E-value=1.1 Score=44.39 Aligned_cols=43 Identities=12% Similarity=0.095 Sum_probs=29.3
Q ss_pred CceEEEEEecCCC--cchHHHHHHhhcCCCCCcEEEEecCcc-cccc
Q 041567 264 TKWYLIVLDDVWS--TNVLDVVREILLDNQNGSRVLITLTRI-KMVT 307 (467)
Q Consensus 264 ~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iivT~TR~-~~v~ 307 (467)
+++-++|+|++.. ....+.+...+-...+++.+|++ |.+ ..+.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~-t~~~~~LL 176 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLV-SARIDRLL 176 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEE-ECChhhCc
Confidence 3455788898864 36788888888777777766665 544 4443
No 454
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=93.68 E-value=0.3 Score=49.98 Aligned_cols=89 Identities=11% Similarity=0.029 Sum_probs=48.0
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCC-CHHHHH-HHHHHhhCCCCc-cccC-CCCCHH----
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHY-DAYQIL-DIVTMFLLPFSM-LSKI-KDKDYE---- 252 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~-~il~~l~~~~~~-~~~~-~~~~~~---- 252 (467)
.-..++|+|..|.|||||++.+.+.. ..+.++...++... ...++. .++..-...... .-.. +.....
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a 242 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFT----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRA 242 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHH
Confidence 35679999999999999999998732 12333344444333 344444 444332211100 0000 111111
Q ss_pred -----HHHHHHHHhhCCceEEEEEecCC
Q 041567 253 -----MKKINLGEYLMTKWYLIVLDDVW 275 (467)
Q Consensus 253 -----~~~~~l~~~L~~kr~LlVlDdv~ 275 (467)
.++++++. +++.+||++||+-
T Consensus 243 ~~~a~aiAEyfrd--~G~~VLl~~DslT 268 (451)
T PRK05688 243 AMYCTRIAEYFRD--KGKNVLLLMDSLT 268 (451)
T ss_pred HHHHHHHHHHHHH--CCCCEEEEecchh
Confidence 12333443 5899999999994
No 455
>PRK14532 adenylate kinase; Provisional
Probab=93.68 E-value=0.05 Score=49.01 Aligned_cols=20 Identities=5% Similarity=0.047 Sum_probs=18.7
Q ss_pred EEEECCCCChHHHHHHHHhc
Q 041567 185 VAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~ 204 (467)
|.|.|++|+||||+|+.+..
T Consensus 3 i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 77899999999999999987
No 456
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.65 E-value=0.18 Score=44.63 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=28.7
Q ss_pred EEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHH
Q 041567 185 VAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAY 227 (467)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 227 (467)
+.|.|.+|+|||++|..+... .....+++.-.+.++.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e 39 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE 39 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH
Confidence 678999999999999998762 22356777777766553
No 457
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=93.64 E-value=0.056 Score=47.66 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 041567 184 VVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+|.|.|..|+||||+|+.+.+
T Consensus 2 iI~i~G~~GSGKstia~~la~ 22 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAE 22 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999987
No 458
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=93.64 E-value=0.056 Score=48.28 Aligned_cols=22 Identities=9% Similarity=0.116 Sum_probs=20.7
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+++|+|..|.|||||++.+..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~ 25 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAA 25 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999999999998
No 459
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.64 E-value=0.19 Score=51.36 Aligned_cols=94 Identities=11% Similarity=0.152 Sum_probs=54.3
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCC-HHHHH-HHHHHhhCCCC-ccccCCCCCHH-----
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYD-AYQIL-DIVTMFLLPFS-MLSKIKDKDYE----- 252 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~-~il~~l~~~~~-~~~~~~~~~~~----- 252 (467)
.-.-++|.|.+|+|||+|+..+.++.. +.+-+.++++-+++... ..++. .+...-..... ..-...+.+.-
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 356789999999999999999877522 23346788888877654 33444 44432111100 00001111111
Q ss_pred -HHHHHHHHhh---CCceEEEEEecCC
Q 041567 253 -MKKINLGEYL---MTKWYLIVLDDVW 275 (467)
Q Consensus 253 -~~~~~l~~~L---~~kr~LlVlDdv~ 275 (467)
...-.+.+++ +++.+||++||+-
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~DslT 242 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNIF 242 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecChH
Confidence 1122344444 4689999999994
No 460
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.63 E-value=0.054 Score=50.87 Aligned_cols=32 Identities=13% Similarity=0.083 Sum_probs=20.8
Q ss_pred EECCCCChHHHHHHHHhcCccccCccceEEEEEc
Q 041567 187 ILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPA 220 (467)
Q Consensus 187 I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 220 (467)
|+|++|+||||+++.+.+.. ...-..++-|+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~--~~~~~~~~~vNL 32 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL--ESNGRDVYIVNL 32 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH--TTT-S-EEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHH--HhccCCceEEEc
Confidence 68999999999999998843 333233444544
No 461
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.62 E-value=0.096 Score=49.92 Aligned_cols=41 Identities=10% Similarity=0.049 Sum_probs=30.2
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCC
Q 041567 180 NQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPY 222 (467)
Q Consensus 180 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~ 222 (467)
+...++.|.|.+|+|||+||.++... ..+ .=..+++++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~-~a~-~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVT-QAS-RGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHH-HHh-CCCcEEEEEecC
Confidence 45689999999999999999987653 112 223577888764
No 462
>COG4240 Predicted kinase [General function prediction only]
Probab=93.62 E-value=0.26 Score=45.12 Aligned_cols=85 Identities=12% Similarity=-0.041 Sum_probs=51.6
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHhhCCCCccccCCCCCHHHHHHHH
Q 041567 180 NQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMFLLPFSMLSKIKDKDYEMKKINL 258 (467)
Q Consensus 180 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l~~~~~~~~~~~~~~~~~~~~~l 258 (467)
.++-+++|.|+-|+||||++..+++.-..+.. ..++..+...-+-...-. .++++...--....-....|..-..+.+
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVL 126 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVL 126 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHH
Confidence 35779999999999999999999984322222 456666665544444444 6666643210000012445566666677
Q ss_pred HHhhCCc
Q 041567 259 GEYLMTK 265 (467)
Q Consensus 259 ~~~L~~k 265 (467)
....+++
T Consensus 127 nai~~g~ 133 (300)
T COG4240 127 NAIARGG 133 (300)
T ss_pred HHHhcCC
Confidence 7776666
No 463
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=93.61 E-value=0.21 Score=51.37 Aligned_cols=94 Identities=18% Similarity=0.230 Sum_probs=52.4
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccc--eEEEEEcCCCCC-HHHHH-HHHHHhhCCCC-ccccCCCCCH-H---
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFD--HLAWIPAPYHYD-AYQIL-DIVTMFLLPFS-MLSKIKDKDY-E--- 252 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~v~~~~~-~~~~~-~il~~l~~~~~-~~~~~~~~~~-~--- 252 (467)
-.-++|.|-.|+|||||+..+.+.......+. .++++-+++... ..+++ .++..=..... ......+.+. .
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~ 220 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIV 220 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHH
Confidence 46789999999999999999988543321121 566777776543 44455 44432211100 0000011111 1
Q ss_pred --HHHHHHHHhhC---CceEEEEEecCC
Q 041567 253 --MKKINLGEYLM---TKWYLIVLDDVW 275 (467)
Q Consensus 253 --~~~~~l~~~L~---~kr~LlVlDdv~ 275 (467)
...-.+.++++ ++++||++||+-
T Consensus 221 a~~~a~tiAEyfr~d~G~~VLli~DslT 248 (458)
T TIGR01041 221 TPRMALTAAEYLAFEKDMHVLVILTDMT 248 (458)
T ss_pred HHHHHHHHHHHHHHccCCcEEEEEcChh
Confidence 11222444544 689999999994
No 464
>PRK05922 type III secretion system ATPase; Validated
Probab=93.60 E-value=0.32 Score=49.54 Aligned_cols=90 Identities=8% Similarity=0.071 Sum_probs=48.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCC-CCHHHHH-HHHHHhhCCCCc-cccCCCCCH-H-----
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYH-YDAYQIL-DIVTMFLLPFSM-LSKIKDKDY-E----- 252 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~-~il~~l~~~~~~-~~~~~~~~~-~----- 252 (467)
-..++|+|..|+|||||.+.+.+.. ..+....+-+++. ....+++ +........... .-...+.+. .
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 4578999999999999999998732 2233333333332 2344555 554433321110 000111111 1
Q ss_pred HHHHHHHHhh--CCceEEEEEecCC
Q 041567 253 MKKINLGEYL--MTKWYLIVLDDVW 275 (467)
Q Consensus 253 ~~~~~l~~~L--~~kr~LlVlDdv~ 275 (467)
...-.+.+++ +++.+||++||+-
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~DslT 257 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSLS 257 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchh
Confidence 1122233333 4799999999994
No 465
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=93.59 E-value=0.21 Score=51.81 Aligned_cols=142 Identities=12% Similarity=0.125 Sum_probs=73.8
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHh
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMF 236 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l 236 (467)
-++++|-+.-...|.+.+..+. -..-....|.-|+||||+|+.+..---... | ....+++..... +|...-
T Consensus 15 F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~~g~ 86 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEINEGS 86 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhhcCC
Confidence 3467999999999999887653 234456789999999999998876211110 0 111222222222 222220
Q ss_pred hCCCCccccCCCCCHHHHHHHHHHhh----CCceEEEEEecCCC--cchHHHHHHhhcCCCCCcEE-EEecCccccccc
Q 041567 237 LLPFSMLSKIKDKDYEMKKINLGEYL----MTKWYLIVLDDVWS--TNVLDVVREILLDNQNGSRV-LITLTRIKMVTR 308 (467)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~L----~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~i-ivT~TR~~~v~~ 308 (467)
....-.-+...+...++..+.+.+.. ++|-=..|+|.|.- ...|+.+...+-.....-+. +.| |-...+..
T Consensus 87 ~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlAT-Te~~Kip~ 164 (515)
T COG2812 87 LIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILAT-TEPQKIPN 164 (515)
T ss_pred cccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEec-CCcCcCch
Confidence 00000000011122222222222211 33445788999964 46788887776654444444 445 55555554
No 466
>PHA02244 ATPase-like protein
Probab=93.58 E-value=0.14 Score=50.72 Aligned_cols=43 Identities=7% Similarity=0.203 Sum_probs=28.8
Q ss_pred CCccccchhHHH----HHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 158 NRNTVGLDDRME----ELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 158 ~~~~vGr~~~~~----~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+..++|...... .+..++..+ . -|.|+|++|+|||+||+.+.+
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~~---~-PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNAN---I-PVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhcC---C-CEEEECCCCCCHHHHHHHHHH
Confidence 344666444443 444444332 2 466799999999999999998
No 467
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.58 E-value=0.052 Score=49.01 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=18.9
Q ss_pred EEEECCCCChHHHHHHHHhc
Q 041567 185 VAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~ 204 (467)
|.|.|++|+||||+|+.+..
T Consensus 2 I~i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAK 21 (194)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999987
No 468
>PLN02348 phosphoribulokinase
Probab=93.57 E-value=0.094 Score=52.42 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=23.4
Q ss_pred CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 179 PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 179 ~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+..-+|+|.|.+|+||||||+.+.+
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999999987
No 469
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.56 E-value=0.1 Score=51.54 Aligned_cols=44 Identities=20% Similarity=0.208 Sum_probs=35.5
Q ss_pred CccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 159 RNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+.+||-+..+..+.-.+.+.. ..-+.|.|..|.|||||++.+..
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~--~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPK--IGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred cccccHHHHHHHHHHHhcCCC--CCeEEEEcCCCCCHHHHHHHHHH
Confidence 568999998888876666542 45677999999999999999975
No 470
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.55 E-value=0.046 Score=51.75 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=19.2
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 041567 184 VVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.|.++|.+|+||||+|+.+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 471
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.55 E-value=0.14 Score=50.45 Aligned_cols=55 Identities=20% Similarity=0.228 Sum_probs=38.2
Q ss_pred CCccccchhHHHH---HHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccce
Q 041567 158 NRNTVGLDDRMEE---LLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDH 214 (467)
Q Consensus 158 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~ 214 (467)
...+||..+.++. +++++....-.-+.|.+.|++|.|||+||..+.+ +.....+.
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~--eLG~~~PF 80 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAK--ELGEDVPF 80 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHH--HCTTTS-E
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHH--HhCCCCCe
Confidence 4579998776664 5566666644468899999999999999999999 66655543
No 472
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=93.52 E-value=0.072 Score=51.22 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=19.1
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+.|+|+|-||+||||++..+..
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~ 22 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAA 22 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHH
Confidence 4689999999999998877765
No 473
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.50 E-value=0.058 Score=47.48 Aligned_cols=28 Identities=11% Similarity=0.183 Sum_probs=22.6
Q ss_pred EEEEEECCCCChHHHHHHHHhcCccccCcc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNSSYVKHYF 212 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 212 (467)
+-|.++||.|+||||+.+.+.+ ...-+|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk--~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAK--ALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHH--HcCCCc
Confidence 3578999999999999999987 444444
No 474
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.48 E-value=0.12 Score=42.96 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=31.7
Q ss_pred ccccchhHHHHHH----HHHhcC-CCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 160 NTVGLDDRMEELL----DLLIEG-PNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 160 ~~vGr~~~~~~l~----~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
+++|-.-..+.++ ..+.+. .+++-|++.+|.+|+|||.+++.++++
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 4566544444444 444443 456789999999999999987777664
No 475
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=93.47 E-value=0.3 Score=50.19 Aligned_cols=89 Identities=12% Similarity=0.095 Sum_probs=48.9
Q ss_pred cEEEEEECCCCChHHHHH-HHHhcCccccCccceE-EEEEcCCCCC-HHHHH-HHHHHhhCCCCc-cccCCCCC-H----
Q 041567 182 LSVVAILNSIGLDKTAFT-AEAYNSSYVKHYFDHL-AWIPAPYHYD-AYQIL-DIVTMFLLPFSM-LSKIKDKD-Y---- 251 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~~-~wv~v~~~~~-~~~~~-~il~~l~~~~~~-~~~~~~~~-~---- 251 (467)
-.-++|.|-.|+|||||| ..+.+. ..-+.+ +++-+++... ..++. .+...=...... .......+ .
T Consensus 141 GQR~~I~g~~g~GKt~Lal~~I~~q----~~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ 216 (485)
T CHL00059 141 GQRELIIGDRQTGKTAVATDTILNQ----KGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYL 216 (485)
T ss_pred CCEEEeecCCCCCHHHHHHHHHHhc----ccCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHH
Confidence 467899999999999995 456553 233444 7788876643 33444 443321111000 00001111 1
Q ss_pred -----HHHHHHHHHhhCCceEEEEEecCCC
Q 041567 252 -----EMKKINLGEYLMTKWYLIVLDDVWS 276 (467)
Q Consensus 252 -----~~~~~~l~~~L~~kr~LlVlDdv~~ 276 (467)
-.++++++. +++.+|||+||+..
T Consensus 217 ap~~a~aiAEyfr~--~G~~VLlv~DdlTr 244 (485)
T CHL00059 217 APYTGAALAEYFMY--RGRHTLIIYDDLSK 244 (485)
T ss_pred HHHHHhhHHHHHHH--cCCCEEEEEcChhH
Confidence 112344443 57999999999953
No 476
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=93.47 E-value=0.16 Score=45.88 Aligned_cols=23 Identities=17% Similarity=0.003 Sum_probs=21.1
Q ss_pred EEEEEECCCCChHHHHHHHHhcC
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..|+|.|..|+||||+++.+.+.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~ 26 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKL 26 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999873
No 477
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=93.47 E-value=0.057 Score=47.80 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=19.9
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..|.|+|++|+||||+|+.+.+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~ 24 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQ 24 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3578899999999999999997
No 478
>PRK13768 GTPase; Provisional
Probab=93.46 E-value=0.097 Score=49.68 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=19.7
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.++.|.|.||+||||++..+..
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~ 24 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSD 24 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHH
Confidence 5789999999999999988876
No 479
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=93.46 E-value=0.1 Score=48.06 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=21.4
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|..|.|||||++.+..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~G 51 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILG 51 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999987
No 480
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.44 E-value=0.085 Score=52.04 Aligned_cols=47 Identities=13% Similarity=0.117 Sum_probs=35.8
Q ss_pred CCCCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 156 SKNRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+-+.++|.++.++.+.-.+.... ..-+.+.|.+|.||||+|+.+.+
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~~~--~~~vLl~G~pG~gKT~lar~la~ 51 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAIDPG--IGGVLVFGDRGTGKSTAVRALAA 51 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhccC--CCcEEEEcCCCCCHHHHHHHHHH
Confidence 344678999998888775454322 34588999999999999999865
No 481
>PTZ00494 tuzin-like protein; Provisional
Probab=93.43 E-value=2.6 Score=42.81 Aligned_cols=80 Identities=14% Similarity=0.077 Sum_probs=60.1
Q ss_pred CCCCCCCccccchhHHHHHHHHHhcCC-CCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-
Q 041567 153 SSSSKNRNTVGLDDRMEELLDLLIEGP-NQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL- 230 (467)
Q Consensus 153 ~~~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~- 230 (467)
..|..+..+|.|+.+-..+.+.|..-+ ..++++.+.|.-|.||++|.+.....+.+ ..++|++... ++-+
T Consensus 365 ~a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~---EDtLr 436 (664)
T PTZ00494 365 LAAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGT---EDTLR 436 (664)
T ss_pred ccccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCC---cchHH
Confidence 334677889999999888888886543 46899999999999999999988774333 3567777643 4456
Q ss_pred HHHHHhhCCC
Q 041567 231 DIVTMFLLPF 240 (467)
Q Consensus 231 ~il~~l~~~~ 240 (467)
.+.+.++-+.
T Consensus 437 sVVKALgV~n 446 (664)
T PTZ00494 437 SVVRALGVSN 446 (664)
T ss_pred HHHHHhCCCC
Confidence 8888888643
No 482
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.43 E-value=0.59 Score=50.03 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=21.8
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+-..++|+|..|.|||||++.+..
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g 388 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTR 388 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457999999999999999999976
No 483
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.43 E-value=0.15 Score=46.40 Aligned_cols=42 Identities=14% Similarity=0.115 Sum_probs=31.1
Q ss_pred CccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 159 RNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
++++|-+..+..+.-.... ..-+.++|.+|+|||+||+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG----~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG----GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC----C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC----CCCeEEECCCCCCHHHHHHHHHH
Confidence 4678888777777765554 24788999999999999999865
No 484
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=93.43 E-value=0.51 Score=40.95 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=19.0
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 041567 184 VVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
-|.|+|.+|+|||+|+..+.++
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~ 23 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSN 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999988753
No 485
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.43 E-value=0.13 Score=53.77 Aligned_cols=100 Identities=13% Similarity=0.074 Sum_probs=51.4
Q ss_pred HHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccC-ccceEE-EEEcCCCCCHHHHHHHHHHhhC-----CCCc
Q 041567 170 ELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKH-YFDHLA-WIPAPYHYDAYQILDIVTMFLL-----PFSM 242 (467)
Q Consensus 170 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~-wv~v~~~~~~~~~~~il~~l~~-----~~~~ 242 (467)
.++++|..-. .-....|+|.+|+|||||++.+.+ .+.. +-++.+ .+-+++-+.. +.++-+.+.. ..+.
T Consensus 405 RvIDll~PIG-kGQR~LIvgpp~aGKTtLL~~IAn--~i~~n~~~~~~ivvLIgERpeE--Vtdm~rsVkgeVVasT~D~ 479 (672)
T PRK12678 405 RVIDLIMPIG-KGQRGLIVSPPKAGKTTILQNIAN--AITTNNPECHLMVVLVDERPEE--VTDMQRSVKGEVIASTFDR 479 (672)
T ss_pred eeeeeecccc-cCCEeEEeCCCCCCHHHHHHHHHH--HHhhcCCCeEEEEEEEeCchhh--HHHHHHhccceEEEECCCC
Confidence 3444444332 345778999999999999999998 3322 223333 3344443321 1223333311 1110
Q ss_pred cccCCCCCHHHHHHHHHHhh--CCceEEEEEecCC
Q 041567 243 LSKIKDKDYEMKKINLGEYL--MTKWYLIVLDDVW 275 (467)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~ 275 (467)
+.. .......+.-.+.++| .++.+||++|++-
T Consensus 480 p~~-~~~~~a~~ai~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 480 PPS-DHTTVAELAIERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred CHH-HHHHHHHHHHHHHHHHHHcCCCEEEEEeCch
Confidence 000 0001122233344444 6799999999983
No 486
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=93.43 E-value=0.096 Score=47.74 Aligned_cols=111 Identities=14% Similarity=0.112 Sum_probs=52.0
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHhhCCCCccccCCCCCHHHHHHHH
Q 041567 180 NQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMFLLPFSMLSKIKDKDYEMKKINL 258 (467)
Q Consensus 180 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l~~~~~~~~~~~~~~~~~~~~~l 258 (467)
..+.++.+.|.+|.||||++..+... .. ....+.++...--....-. .+... ..... . .........+...+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~--~~--~~~~v~i~~D~~r~~~p~~~~~~~~-~~~~~-~-~~~~~~a~~~~~~~ 85 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEE--FG--GGGIVVIDADEFRQFHPDYDELLKA-DPDEA-S-ELTQKEASRLAEKL 85 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHH--T---TT-SEEE-GGGGGGGSTTHHHHHHH-HCCCT-H-HHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhh--cc--CCCeEEEehHHHHHhccchhhhhhh-hhhhh-H-HHHHHHHHHHHHHH
Confidence 46788999999999999999988772 21 3445555543211100111 22221 11100 0 00111223345555
Q ss_pred HHhhCCceEEEEEecCCCc-chHHHHHHhhcCCCCCcEEEEe
Q 041567 259 GEYLMTKWYLIVLDDVWST-NVLDVVREILLDNQNGSRVLIT 299 (467)
Q Consensus 259 ~~~L~~kr~LlVlDdv~~~-~~~~~l~~~l~~~~~gs~iivT 299 (467)
.+....+++=+|+|..-.. +....+...+... |-+|.+.
T Consensus 86 ~~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~~--GY~v~l~ 125 (199)
T PF06414_consen 86 IEYAIENRYNIIFEGTLSNPSKLRKLIREAKAA--GYKVELY 125 (199)
T ss_dssp HHHHHHCT--EEEE--TTSSHHHHHHHHHHHCT--T-EEEEE
T ss_pred HHHHHHcCCCEEEecCCCChhHHHHHHHHHHcC--CceEEEE
Confidence 6665667778888987654 4444466666543 4444433
No 487
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.42 E-value=0.25 Score=50.48 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=22.3
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.-..++|.|..|+|||||++.+...
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~ 186 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARG 186 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999874
No 488
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.42 E-value=0.34 Score=49.59 Aligned_cols=94 Identities=11% Similarity=0.151 Sum_probs=52.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCC-HHHHH-HHHHHhhCCCC-ccccCCCCCHH-H---
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYD-AYQIL-DIVTMFLLPFS-MLSKIKDKDYE-M--- 253 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~-~il~~l~~~~~-~~~~~~~~~~~-~--- 253 (467)
.-.-++|.|.+|+|||||+..+..+.. ..+=..++++-+++... ..+++ +++..=..... ..-.....+.. .
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~-~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIA-KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHH-hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 356789999999999999999876311 11223677777766543 44555 55432111100 00001111111 1
Q ss_pred --HHHHHHHhh---CCceEEEEEecCC
Q 041567 254 --KKINLGEYL---MTKWYLIVLDDVW 275 (467)
Q Consensus 254 --~~~~l~~~L---~~kr~LlVlDdv~ 275 (467)
..-.+.+++ +++.+||++||+-
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~DslT 247 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecchh
Confidence 123344555 4689999999994
No 489
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=93.37 E-value=0.068 Score=46.88 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 041567 184 VVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
-|+|+|.+|+|||||+..+.+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999875
No 490
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=93.37 E-value=0.056 Score=48.40 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=19.4
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 041567 184 VVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+|+|+|+.|+||||+++.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999876
No 491
>PRK14531 adenylate kinase; Provisional
Probab=93.37 E-value=0.066 Score=48.11 Aligned_cols=22 Identities=18% Similarity=0.139 Sum_probs=19.9
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..|.|+|++|+||||+++.+..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999987
No 492
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=93.36 E-value=0.064 Score=44.02 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=19.5
Q ss_pred EEEECCCCChHHHHHHHHhcC
Q 041567 185 VAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~~ 205 (467)
|+|+|++|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
No 493
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.35 E-value=0.29 Score=47.65 Aligned_cols=89 Identities=12% Similarity=0.082 Sum_probs=50.1
Q ss_pred EEEEEECCCCChHHHHHHHHhcCccccCcc-ceEEEEEcCCCCCHHHHH-HHHHHhhCCCCccccCCCCCHHHHHHHHHH
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNSSYVKHYF-DHLAWIPAPYHYDAYQIL-DIVTMFLLPFSMLSKIKDKDYEMKKINLGE 260 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~v~~~~~~~~~~-~il~~l~~~~~~~~~~~~~~~~~~~~~l~~ 260 (467)
..|.|.|..|+||||+++.+.+ .+.... +.++ +.+.... ++. .--..+.... . . ......+.++.
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~--~i~~~~~~~ri-~tiEd~~---El~~~~~~~v~~~~----~-~--~~~~~~~~l~~ 199 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLA--EIAKNDPTDRV-VIIEDTR---ELQCAAPNVVQLRT----S-D--DAISMTRLLKA 199 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HhhccCCCceE-EEECCch---hhcCCCCCEEEEEe----c-C--CCCCHHHHHHH
Confidence 4567999999999999999987 333221 1222 2222111 100 0000000000 0 0 11145667788
Q ss_pred hhCCceEEEEEecCCCcchHHHHH
Q 041567 261 YLMTKWYLIVLDDVWSTNVLDVVR 284 (467)
Q Consensus 261 ~L~~kr~LlVlDdv~~~~~~~~l~ 284 (467)
.|+..+=-||+..+.+.+.|+-+.
T Consensus 200 aLR~~pD~iivGEiR~~ea~~~l~ 223 (299)
T TIGR02782 200 TLRLRPDRIIVGEVRGGEALDLLK 223 (299)
T ss_pred HhcCCCCEEEEeccCCHHHHHHHH
Confidence 888888889999999887776443
No 494
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.32 E-value=0.12 Score=46.66 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=21.5
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
-.+++|+|..|.|||||.+.+...
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999863
No 495
>PRK06820 type III secretion system ATPase; Validated
Probab=93.32 E-value=0.44 Score=48.73 Aligned_cols=38 Identities=13% Similarity=0.089 Sum_probs=27.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYH 223 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~ 223 (467)
-..++|+|..|+|||||++.+.... +-+..+..-+++.
T Consensus 163 Gqri~I~G~sG~GKStLl~~I~~~~----~~dv~V~~~iGer 200 (440)
T PRK06820 163 GQRIGIFAAAGVGKSTLLGMLCADS----AADVMVLALIGER 200 (440)
T ss_pred CCEEEEECCCCCChHHHHHHHhccC----CCCEEEEEEEccC
Confidence 4588999999999999999888732 2234445555554
No 496
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=93.31 E-value=0.093 Score=47.16 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=21.5
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.+.|.|+|++|+|||||+..+...
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999883
No 497
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.31 E-value=0.12 Score=47.44 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=21.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
-.+++|+|..|.|||||++.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999999999873
No 498
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.31 E-value=0.59 Score=49.30 Aligned_cols=127 Identities=18% Similarity=0.238 Sum_probs=65.2
Q ss_pred HHHHHHHHhcCCCCcEEEEEECCCCChHHH-HHHHHhcCccccCccceEEEEEcCCCCCHHH--HH-HHHHHhhCCCCcc
Q 041567 168 MEELLDLLIEGPNQLSVVAILNSIGLDKTA-FTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQ--IL-DIVTMFLLPFSML 243 (467)
Q Consensus 168 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTt-LA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~--~~-~il~~l~~~~~~~ 243 (467)
.++|++.+.. -.||.|+|..|+|||| |++.+|.+- |..---|-+.++-.+.. +. .+.+.++......
T Consensus 361 R~~ll~~ir~----n~vvvivgETGSGKTTQl~QyL~edG-----Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~ 431 (1042)
T KOG0924|consen 361 RDQLLSVIRE----NQVVVIVGETGSGKTTQLAQYLYEDG-----YADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDT 431 (1042)
T ss_pred HHHHHHHHhh----CcEEEEEecCCCCchhhhHHHHHhcc-----cccCCeeeecCchHHHHHHHHHHHHHHhCCccccc
Confidence 3455555554 3699999999999997 888888752 21111344444433332 23 4455553321100
Q ss_pred -------cc-------CCCCCHHHHHHHHHHhhCC----ceEEEEEecCCCc----chHHHHHHhhcCCCCCcEEEEecC
Q 041567 244 -------SK-------IKDKDYEMKKINLGEYLMT----KWYLIVLDDVWST----NVLDVVREILLDNQNGSRVLITLT 301 (467)
Q Consensus 244 -------~~-------~~~~~~~~~~~~l~~~L~~----kr~LlVlDdv~~~----~~~~~l~~~l~~~~~gs~iivT~T 301 (467)
++ +.-++. --.|++.|.+ |=..||+|..... +.+--|..........-|+||| |
T Consensus 432 VGYsIRFEdvT~~~T~IkymTD---GiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVt-S 507 (1042)
T KOG0924|consen 432 VGYSIRFEDVTSEDTKIKYMTD---GILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVT-S 507 (1042)
T ss_pred cceEEEeeecCCCceeEEEecc---chHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEe-e
Confidence 00 000111 1234444544 4568899998654 2222222222233346799999 6
Q ss_pred cccccc
Q 041567 302 RIKMVT 307 (467)
Q Consensus 302 R~~~v~ 307 (467)
-..+..
T Consensus 508 ATm~a~ 513 (1042)
T KOG0924|consen 508 ATMDAQ 513 (1042)
T ss_pred ccccHH
Confidence 554433
No 499
>PRK01184 hypothetical protein; Provisional
Probab=93.30 E-value=0.069 Score=47.91 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=17.9
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+|+|+|++|+||||+|+ ++.
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~ 22 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAR 22 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHH
Confidence 489999999999999987 444
No 500
>PLN02165 adenylate isopentenyltransferase
Probab=93.29 E-value=0.071 Score=52.20 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=22.2
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
...+|+|+|+.|+||||||..+...
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~ 66 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATR 66 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH
Confidence 4569999999999999999999873
Done!