Query 041567
Match_columns 467
No_of_seqs 343 out of 2112
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 14:19:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041567.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041567hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 3.3E-48 1.1E-52 408.0 27.1 282 162-458 131-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 6E-41 2E-45 384.5 25.0 283 155-456 120-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 1.8E-38 6.1E-43 341.4 18.9 266 159-449 128-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.3E-36 4.4E-41 323.2 20.9 279 155-453 120-449 (591)
5 3qfl_A MLA10; coiled-coil, (CC 99.7 5.4E-18 1.9E-22 139.1 9.0 107 3-123 1-109 (115)
6 2qen_A Walker-type ATPase; unk 99.6 2.1E-14 7.3E-19 141.3 17.6 271 154-450 7-349 (350)
7 1w5s_A Origin recognition comp 99.6 2.3E-14 7.9E-19 144.6 13.9 280 157-445 20-387 (412)
8 2fna_A Conserved hypothetical 99.5 1.7E-13 5.7E-18 135.2 17.9 266 155-449 9-356 (357)
9 2qby_B CDC6 homolog 3, cell di 99.4 2.1E-11 7.2E-16 121.7 19.6 265 158-430 19-341 (384)
10 2v1u_A Cell division control p 99.4 6.1E-11 2.1E-15 118.2 22.8 265 157-429 17-352 (387)
11 1fnn_A CDC6P, cell division co 99.3 1.2E-10 4E-15 116.3 21.5 266 157-430 15-353 (389)
12 2qby_A CDC6 homolog 1, cell di 99.3 7.4E-11 2.5E-15 117.4 16.1 265 157-429 18-349 (386)
13 1njg_A DNA polymerase III subu 99.0 6.9E-09 2.4E-13 95.7 14.6 177 158-343 22-228 (250)
14 2chg_A Replication factor C sm 98.9 1.7E-08 5.8E-13 91.8 12.5 124 157-304 15-142 (226)
15 1hqc_A RUVB; extended AAA-ATPa 98.7 8.1E-08 2.8E-12 93.2 11.9 48 157-204 10-60 (324)
16 1sxj_B Activator 1 37 kDa subu 98.7 5.9E-08 2E-12 93.9 10.8 123 158-304 20-147 (323)
17 3te6_A Regulatory protein SIR3 98.5 9.2E-07 3.1E-11 85.2 12.1 114 160-277 21-144 (318)
18 1jbk_A CLPB protein; beta barr 98.4 4.4E-07 1.5E-11 80.3 8.0 46 158-205 21-66 (195)
19 1jr3_A DNA polymerase III subu 98.3 8.4E-06 2.9E-10 80.4 14.4 137 158-303 15-158 (373)
20 1iqp_A RFCS; clamp loader, ext 98.3 7.2E-07 2.5E-11 86.4 6.5 124 157-304 23-150 (327)
21 2p65_A Hypothetical protein PF 98.1 3.9E-06 1.3E-10 73.8 5.9 46 158-205 21-66 (187)
22 3n70_A Transport activator; si 98.0 1.5E-05 5.2E-10 67.6 8.7 112 160-303 2-115 (145)
23 3ec2_A DNA replication protein 98.0 1.1E-05 3.7E-10 71.1 8.1 115 165-302 20-141 (180)
24 3h4m_A Proteasome-activating n 98.0 8E-06 2.7E-10 77.5 7.6 49 156-204 14-73 (285)
25 3syl_A Protein CBBX; photosynt 98.0 5.4E-06 1.9E-10 79.7 5.4 45 160-204 32-89 (309)
26 2w58_A DNAI, primosome compone 97.9 1.8E-05 6.3E-10 70.9 7.7 95 159-276 25-126 (202)
27 3u61_B DNA polymerase accessor 97.9 4.8E-05 1.6E-09 73.6 11.2 120 157-304 24-146 (324)
28 2chq_A Replication factor C sm 97.9 6.1E-06 2.1E-10 79.5 4.4 120 158-304 16-142 (319)
29 2qz4_A Paraplegin; AAA+, SPG7, 97.9 6E-05 2.1E-09 70.3 11.0 47 158-204 5-61 (262)
30 3pfi_A Holliday junction ATP-d 97.8 0.00018 6.2E-09 69.8 13.4 48 157-204 27-77 (338)
31 3eie_A Vacuolar protein sortin 97.7 8.5E-05 2.9E-09 71.9 9.4 49 156-204 15-73 (322)
32 1xwi_A SKD1 protein; VPS4B, AA 97.7 0.00032 1.1E-08 67.9 13.1 48 157-204 10-67 (322)
33 1sxj_E Activator 1 40 kDa subu 97.7 0.00015 5.2E-09 70.9 10.6 45 158-204 13-58 (354)
34 2z4s_A Chromosomal replication 97.7 8.2E-05 2.8E-09 75.3 8.7 122 159-304 105-237 (440)
35 1sxj_D Activator 1 41 kDa subu 97.7 0.00022 7.6E-09 69.5 11.3 135 157-303 35-172 (353)
36 3bos_A Putative DNA replicatio 97.7 1.8E-05 6.2E-10 72.6 3.0 60 158-221 27-89 (242)
37 3co5_A Putative two-component 97.6 3.7E-05 1.3E-09 65.0 4.7 47 159-205 4-50 (143)
38 3uk6_A RUVB-like 2; hexameric 97.6 0.00045 1.6E-08 67.8 13.2 48 158-205 43-93 (368)
39 1sxj_A Activator 1 95 kDa subu 97.6 0.00038 1.3E-08 71.9 12.9 64 157-225 37-115 (516)
40 1d2n_A N-ethylmaleimide-sensit 97.6 0.00014 5E-09 68.3 8.2 47 158-204 32-86 (272)
41 3d8b_A Fidgetin-like protein 1 97.6 0.0001 3.5E-09 72.5 7.3 48 157-204 82-139 (357)
42 3cf0_A Transitional endoplasmi 97.5 0.0004 1.4E-08 66.5 10.8 48 157-204 13-71 (301)
43 3vfd_A Spastin; ATPase, microt 97.5 0.00025 8.6E-09 70.5 9.7 49 156-204 112-170 (389)
44 1l8q_A Chromosomal replication 97.5 0.00023 8E-09 68.7 8.4 113 168-304 23-141 (324)
45 2qp9_X Vacuolar protein sortin 97.5 0.00033 1.1E-08 68.7 9.1 48 157-204 49-106 (355)
46 3pvs_A Replication-associated 97.4 0.0005 1.7E-08 69.5 10.4 46 157-204 24-72 (447)
47 3b9p_A CG5977-PA, isoform A; A 97.4 0.00029 1E-08 67.0 8.2 49 156-204 18-76 (297)
48 2bjv_A PSP operon transcriptio 97.4 0.00029 9.8E-09 66.0 8.0 47 159-205 6-52 (265)
49 2cvh_A DNA repair and recombin 97.4 0.0011 3.9E-08 59.7 11.7 91 181-276 19-116 (220)
50 4b4t_L 26S protease subunit RP 97.4 0.0017 5.7E-08 65.1 13.7 52 159-212 181-243 (437)
51 1lv7_A FTSH; alpha/beta domain 97.4 0.00043 1.5E-08 64.4 8.6 48 157-204 10-67 (257)
52 1sxj_C Activator 1 40 kDa subu 97.4 0.00058 2E-08 66.4 9.8 44 159-204 25-68 (340)
53 2zan_A Vacuolar protein sortin 97.4 0.00043 1.5E-08 70.1 8.9 49 156-204 131-189 (444)
54 2ce7_A Cell division protein F 97.4 0.0011 3.6E-08 67.5 11.7 48 157-204 14-71 (476)
55 1a5t_A Delta prime, HOLB; zinc 97.4 0.0054 1.8E-07 59.4 16.3 39 165-204 8-46 (334)
56 4fcw_A Chaperone protein CLPB; 97.3 0.00052 1.8E-08 65.6 8.8 61 160-222 18-85 (311)
57 4b4t_J 26S protease regulatory 97.3 0.0015 5E-08 64.6 11.9 52 159-212 148-210 (405)
58 2gno_A DNA polymerase III, gam 97.3 0.0016 5.5E-08 62.3 11.5 117 163-303 1-121 (305)
59 4b4t_H 26S protease regulatory 97.2 0.0027 9.3E-08 63.7 12.7 52 159-212 209-271 (467)
60 2r62_A Cell division protease 97.2 0.00015 5.2E-09 68.0 3.5 48 157-204 9-66 (268)
61 3hu3_A Transitional endoplasmi 97.2 0.00059 2E-08 69.8 8.0 46 159-204 204-260 (489)
62 1qvr_A CLPB protein; coiled co 97.2 0.00042 1.4E-08 76.1 7.0 45 158-204 169-213 (854)
63 3pxg_A Negative regulator of g 97.2 0.00066 2.3E-08 69.2 7.7 44 159-204 180-223 (468)
64 1ojl_A Transcriptional regulat 97.1 0.0014 4.8E-08 62.8 9.5 47 159-205 2-48 (304)
65 2kjq_A DNAA-related protein; s 97.1 0.00091 3.1E-08 56.8 7.3 25 181-205 35-59 (149)
66 4b4t_I 26S protease regulatory 97.1 0.0033 1.1E-07 62.5 11.7 52 159-212 182-244 (437)
67 3t15_A Ribulose bisphosphate c 97.1 0.00079 2.7E-08 64.1 6.7 24 181-204 35-58 (293)
68 4b4t_K 26S protease regulatory 97.0 0.0014 4.7E-08 65.6 8.5 53 158-212 171-234 (428)
69 2qgz_A Helicase loader, putati 97.0 0.00036 1.2E-08 67.0 3.8 54 165-220 134-189 (308)
70 2dhr_A FTSH; AAA+ protein, hex 96.9 0.0068 2.3E-07 61.9 12.5 49 156-204 28-86 (499)
71 1r6b_X CLPA protein; AAA+, N-t 96.8 0.0055 1.9E-07 66.3 12.0 45 158-204 185-229 (758)
72 4b4t_M 26S protease regulatory 96.8 0.0016 5.4E-08 65.2 7.0 53 158-212 180-243 (434)
73 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.00092 3.1E-08 63.9 4.9 69 182-276 123-193 (331)
74 1v5w_A DMC1, meiotic recombina 96.8 0.0076 2.6E-07 58.6 11.5 105 171-275 111-229 (343)
75 1n0w_A DNA repair protein RAD5 96.8 0.0032 1.1E-07 57.6 8.2 96 181-276 23-130 (243)
76 2c9o_A RUVB-like 1; hexameric 96.8 0.0023 7.9E-08 64.9 7.8 47 158-204 36-85 (456)
77 3hr8_A Protein RECA; alpha and 96.8 0.009 3.1E-07 58.2 11.6 101 169-275 47-149 (356)
78 3pxi_A Negative regulator of g 96.8 0.0021 7.2E-08 69.6 7.7 44 159-204 180-223 (758)
79 2z43_A DNA repair and recombin 96.7 0.0034 1.2E-07 60.6 8.0 95 181-275 106-213 (324)
80 2b8t_A Thymidine kinase; deoxy 96.7 0.0016 5.5E-08 59.2 5.0 112 181-304 11-126 (223)
81 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.0059 2E-07 55.2 8.9 118 182-304 23-168 (235)
82 3pxi_A Negative regulator of g 96.6 0.0041 1.4E-07 67.3 9.1 46 159-204 491-543 (758)
83 2x8a_A Nuclear valosin-contain 96.6 0.005 1.7E-07 57.9 8.4 46 158-204 9-66 (274)
84 3cf2_A TER ATPase, transitiona 96.6 0.0025 8.6E-08 68.6 6.6 93 159-275 204-307 (806)
85 2i1q_A DNA repair and recombin 96.6 0.0043 1.5E-07 59.7 7.6 95 181-275 97-214 (322)
86 1ypw_A Transitional endoplasmi 96.5 0.0017 5.8E-08 70.6 4.7 46 159-204 204-260 (806)
87 2zr9_A Protein RECA, recombina 96.4 0.019 6.4E-07 56.0 11.2 89 181-275 60-149 (349)
88 1g5t_A COB(I)alamin adenosyltr 96.4 0.0047 1.6E-07 54.7 6.1 114 183-304 29-163 (196)
89 3c8u_A Fructokinase; YP_612366 96.4 0.0026 8.9E-08 57.1 4.6 38 167-204 7-44 (208)
90 3io5_A Recombination and repai 96.3 0.016 5.5E-07 55.2 9.9 87 184-276 30-122 (333)
91 3m6a_A ATP-dependent protease 96.3 0.0064 2.2E-07 63.0 7.7 46 159-204 81-130 (543)
92 1in4_A RUVB, holliday junction 96.3 0.0021 7.4E-08 62.3 3.8 46 159-204 25-73 (334)
93 1rz3_A Hypothetical protein rb 96.3 0.0043 1.5E-07 55.3 5.3 41 164-204 3-44 (201)
94 1ofh_A ATP-dependent HSL prote 96.3 0.0022 7.5E-08 61.0 3.5 46 159-204 15-72 (310)
95 1qvr_A CLPB protein; coiled co 96.2 0.012 4.2E-07 64.4 9.7 45 160-204 559-610 (854)
96 4a74_A DNA repair and recombin 96.1 0.018 6.1E-07 52.0 8.7 57 181-237 24-84 (231)
97 1xp8_A RECA protein, recombina 96.1 0.015 5.1E-07 57.0 8.7 89 181-275 73-162 (366)
98 1pzn_A RAD51, DNA repair and r 96.0 0.015 5.3E-07 56.5 8.4 97 181-277 130-243 (349)
99 1u94_A RECA protein, recombina 96.0 0.016 5.4E-07 56.6 8.0 89 181-275 62-151 (356)
100 3lw7_A Adenylate kinase relate 95.9 0.004 1.4E-07 53.5 3.0 20 183-202 2-21 (179)
101 1odf_A YGR205W, hypothetical 3 95.8 0.0094 3.2E-07 56.5 5.6 81 179-264 28-117 (290)
102 3hws_A ATP-dependent CLP prote 95.8 0.0068 2.3E-07 59.3 4.7 45 160-204 16-73 (363)
103 1qhx_A CPT, protein (chloramph 95.8 0.0045 1.5E-07 53.7 3.0 22 183-204 4-25 (178)
104 2pjz_A Hypothetical protein ST 95.7 0.077 2.6E-06 49.3 11.5 23 182-204 30-52 (263)
105 3lda_A DNA repair protein RAD5 95.7 0.016 5.5E-07 57.4 7.0 106 170-275 166-283 (400)
106 1zp6_A Hypothetical protein AT 95.7 0.0059 2E-07 53.6 3.5 24 182-205 9-32 (191)
107 2r44_A Uncharacterized protein 95.7 0.0077 2.6E-07 58.0 4.5 63 159-230 27-89 (331)
108 3kb2_A SPBC2 prophage-derived 95.6 0.0055 1.9E-07 52.7 2.9 22 183-204 2-23 (173)
109 1ly1_A Polynucleotide kinase; 95.6 0.0066 2.3E-07 52.6 3.4 22 183-204 3-24 (181)
110 3nbx_X ATPase RAVA; AAA+ ATPas 95.6 0.013 4.4E-07 59.9 5.9 43 159-205 22-64 (500)
111 3bh0_A DNAB-like replicative h 95.6 0.053 1.8E-06 51.9 9.9 61 170-235 57-118 (315)
112 3vaa_A Shikimate kinase, SK; s 95.5 0.0066 2.3E-07 53.9 3.1 23 182-204 25-47 (199)
113 1vma_A Cell division protein F 95.5 0.048 1.7E-06 51.9 9.2 24 181-204 103-126 (306)
114 1knq_A Gluconate kinase; ALFA/ 95.4 0.01 3.5E-07 51.3 3.9 24 181-204 7-30 (175)
115 3dm5_A SRP54, signal recogniti 95.4 0.076 2.6E-06 53.1 10.6 24 181-204 99-122 (443)
116 1kag_A SKI, shikimate kinase I 95.4 0.0062 2.1E-07 52.5 2.4 22 183-204 5-26 (173)
117 3uie_A Adenylyl-sulfate kinase 95.4 0.0098 3.4E-07 52.8 3.7 24 181-204 24-47 (200)
118 3tlx_A Adenylate kinase 2; str 95.4 0.013 4.4E-07 54.0 4.6 40 165-204 12-51 (243)
119 2px0_A Flagellar biosynthesis 95.4 0.043 1.5E-06 52.0 8.3 24 181-204 104-127 (296)
120 1kgd_A CASK, peripheral plasma 95.3 0.0087 3E-07 52.2 3.2 23 182-204 5-27 (180)
121 3kl4_A SRP54, signal recogniti 95.3 0.068 2.3E-06 53.4 10.0 24 181-204 96-119 (433)
122 1ixz_A ATP-dependent metallopr 95.3 0.011 3.7E-07 54.7 3.8 48 157-204 14-71 (254)
123 3jvv_A Twitching mobility prot 95.3 0.012 4.2E-07 57.4 4.3 104 182-299 123-227 (356)
124 3trf_A Shikimate kinase, SK; a 95.3 0.0085 2.9E-07 52.3 2.9 23 182-204 5-27 (185)
125 1gvn_B Zeta; postsegregational 95.3 0.018 6.1E-07 54.4 5.3 24 181-204 32-55 (287)
126 3tr0_A Guanylate kinase, GMP k 95.2 0.011 3.7E-07 52.4 3.5 23 182-204 7-29 (205)
127 2rhm_A Putative kinase; P-loop 95.2 0.01 3.4E-07 52.1 3.1 23 182-204 5-27 (193)
128 4eun_A Thermoresistant glucoki 95.2 0.011 3.6E-07 52.6 3.3 24 181-204 28-51 (200)
129 2ga8_A Hypothetical 39.9 kDa p 95.2 0.02 6.8E-07 55.5 5.4 43 162-204 2-46 (359)
130 4gp7_A Metallophosphoesterase; 95.2 0.012 4E-07 51.0 3.4 23 182-204 9-31 (171)
131 1nks_A Adenylate kinase; therm 95.1 0.0097 3.3E-07 52.1 2.9 22 183-204 2-23 (194)
132 3e70_C DPA, signal recognition 95.1 0.059 2E-06 51.8 8.6 24 181-204 128-151 (328)
133 1um8_A ATP-dependent CLP prote 95.1 0.018 6.1E-07 56.6 4.9 46 159-204 21-94 (376)
134 3t61_A Gluconokinase; PSI-biol 95.1 0.0081 2.8E-07 53.4 2.2 23 182-204 18-40 (202)
135 3tau_A Guanylate kinase, GMP k 95.1 0.013 4.3E-07 52.6 3.5 24 181-204 7-30 (208)
136 2p5t_B PEZT; postsegregational 95.1 0.018 6.2E-07 53.2 4.6 37 168-204 15-54 (253)
137 1iy2_A ATP-dependent metallopr 95.0 0.014 4.8E-07 54.8 3.8 49 156-204 37-95 (278)
138 2bdt_A BH3686; alpha-beta prot 95.0 0.013 4.5E-07 51.3 3.5 22 183-204 3-24 (189)
139 1tev_A UMP-CMP kinase; ploop, 95.0 0.013 4.4E-07 51.4 3.4 23 182-204 3-25 (196)
140 1kht_A Adenylate kinase; phosp 95.0 0.012 4.1E-07 51.4 3.1 22 183-204 4-25 (192)
141 2j41_A Guanylate kinase; GMP, 95.0 0.012 4.2E-07 52.1 3.2 23 182-204 6-28 (207)
142 3asz_A Uridine kinase; cytidin 95.0 0.013 4.3E-07 52.4 3.2 24 181-204 5-28 (211)
143 2orw_A Thymidine kinase; TMTK, 95.0 0.0031 1.1E-07 55.5 -0.8 22 183-204 4-25 (184)
144 2qt1_A Nicotinamide riboside k 95.0 0.014 4.7E-07 52.1 3.5 24 181-204 20-43 (207)
145 2ze6_A Isopentenyl transferase 95.0 0.013 4.4E-07 54.3 3.3 22 183-204 2-23 (253)
146 3iij_A Coilin-interacting nucl 94.9 0.01 3.6E-07 51.5 2.5 23 182-204 11-33 (180)
147 1zuh_A Shikimate kinase; alpha 94.9 0.013 4.3E-07 50.4 3.0 24 181-204 6-29 (168)
148 1y63_A LMAJ004144AAA protein; 94.9 0.014 4.6E-07 51.2 3.2 24 181-204 9-32 (184)
149 2jaq_A Deoxyguanosine kinase; 94.9 0.013 4.3E-07 51.9 3.1 21 184-204 2-22 (205)
150 2qor_A Guanylate kinase; phosp 94.9 0.011 3.6E-07 52.8 2.5 24 181-204 11-34 (204)
151 1uf9_A TT1252 protein; P-loop, 94.9 0.014 4.8E-07 51.6 3.2 24 181-204 7-30 (203)
152 3tqc_A Pantothenate kinase; bi 94.9 0.026 9E-07 54.1 5.3 42 163-204 71-114 (321)
153 1nlf_A Regulatory protein REPA 94.9 0.072 2.5E-06 49.8 8.3 23 182-204 30-52 (279)
154 1ukz_A Uridylate kinase; trans 94.9 0.016 5.4E-07 51.4 3.5 24 181-204 14-37 (203)
155 1cke_A CK, MSSA, protein (cyti 94.9 0.014 4.7E-07 52.8 3.1 22 183-204 6-27 (227)
156 1jjv_A Dephospho-COA kinase; P 94.9 0.016 5.5E-07 51.5 3.5 22 183-204 3-24 (206)
157 2c95_A Adenylate kinase 1; tra 94.8 0.013 4.5E-07 51.5 2.9 23 182-204 9-31 (196)
158 1via_A Shikimate kinase; struc 94.8 0.011 3.8E-07 51.1 2.4 22 183-204 5-26 (175)
159 3cm0_A Adenylate kinase; ATP-b 94.8 0.016 5.5E-07 50.5 3.4 23 182-204 4-26 (186)
160 3a00_A Guanylate kinase, GMP k 94.8 0.012 4.1E-07 51.6 2.5 22 183-204 2-23 (186)
161 1uj2_A Uridine-cytidine kinase 94.8 0.016 5.4E-07 53.6 3.4 24 181-204 21-44 (252)
162 3a4m_A L-seryl-tRNA(SEC) kinas 94.8 0.016 5.4E-07 53.9 3.5 23 182-204 4-26 (260)
163 1ye8_A Protein THEP1, hypothet 94.8 0.016 5.5E-07 50.6 3.3 22 184-205 2-23 (178)
164 2if2_A Dephospho-COA kinase; a 94.8 0.013 4.5E-07 52.0 2.7 22 183-204 2-23 (204)
165 2yvu_A Probable adenylyl-sulfa 94.8 0.018 6.1E-07 50.3 3.6 24 181-204 12-35 (186)
166 2iyv_A Shikimate kinase, SK; t 94.8 0.011 3.7E-07 51.6 2.1 22 183-204 3-24 (184)
167 2plr_A DTMP kinase, probable t 94.8 0.017 5.9E-07 51.3 3.5 23 182-204 4-26 (213)
168 1g8p_A Magnesium-chelatase 38 94.7 0.015 5.3E-07 56.2 3.4 46 157-204 22-67 (350)
169 2bbw_A Adenylate kinase 4, AK4 94.7 0.017 5.8E-07 53.1 3.3 23 182-204 27-49 (246)
170 3p32_A Probable GTPase RV1496/ 94.7 0.033 1.1E-06 54.3 5.6 37 168-204 65-101 (355)
171 2hf9_A Probable hydrogenase ni 94.6 0.028 9.7E-07 50.5 4.7 36 168-205 26-61 (226)
172 1lvg_A Guanylate kinase, GMP k 94.6 0.014 4.9E-07 51.8 2.6 23 182-204 4-26 (198)
173 3umf_A Adenylate kinase; rossm 94.6 0.02 6.9E-07 51.7 3.6 25 180-204 27-51 (217)
174 1e6c_A Shikimate kinase; phosp 94.6 0.014 4.7E-07 50.2 2.4 22 183-204 3-24 (173)
175 2vli_A Antibiotic resistance p 94.6 0.013 4.3E-07 51.0 2.1 23 182-204 5-27 (183)
176 2cdn_A Adenylate kinase; phosp 94.6 0.02 6.9E-07 50.7 3.4 24 181-204 19-42 (201)
177 3aez_A Pantothenate kinase; tr 94.6 0.021 7.3E-07 54.6 3.8 24 181-204 89-112 (312)
178 3thx_A DNA mismatch repair pro 94.6 0.18 6.3E-06 55.3 11.6 22 181-202 661-682 (934)
179 2pt5_A Shikimate kinase, SK; a 94.5 0.019 6.7E-07 49.0 3.1 21 184-204 2-22 (168)
180 2bwj_A Adenylate kinase 5; pho 94.5 0.016 5.5E-07 51.0 2.6 23 182-204 12-34 (199)
181 2jeo_A Uridine-cytidine kinase 94.5 0.023 7.9E-07 52.2 3.8 24 181-204 24-47 (245)
182 1sky_E F1-ATPase, F1-ATP synth 94.5 0.073 2.5E-06 53.5 7.6 41 183-225 152-193 (473)
183 1qf9_A UMP/CMP kinase, protein 94.5 0.018 6.3E-07 50.2 2.9 23 182-204 6-28 (194)
184 3fwy_A Light-independent proto 94.5 0.022 7.6E-07 54.5 3.6 39 181-221 47-85 (314)
185 2wsm_A Hydrogenase expression/ 94.4 0.027 9.3E-07 50.5 4.0 40 164-205 14-53 (221)
186 2pbr_A DTMP kinase, thymidylat 94.4 0.02 6.8E-07 50.1 3.0 21 184-204 2-22 (195)
187 3ice_A Transcription terminati 94.4 0.069 2.4E-06 52.3 6.9 97 170-274 163-270 (422)
188 2yhs_A FTSY, cell division pro 94.4 0.19 6.4E-06 50.9 10.4 24 181-204 292-315 (503)
189 1ex7_A Guanylate kinase; subst 94.4 0.017 5.6E-07 50.9 2.4 22 183-204 2-23 (186)
190 1znw_A Guanylate kinase, GMP k 94.4 0.022 7.5E-07 50.8 3.3 23 182-204 20-42 (207)
191 4a1f_A DNAB helicase, replicat 94.4 0.13 4.4E-06 49.6 8.9 53 181-237 45-98 (338)
192 2xxa_A Signal recognition part 94.4 0.2 6.9E-06 50.1 10.5 38 167-204 78-122 (433)
193 2grj_A Dephospho-COA kinase; T 94.3 0.024 8E-07 50.2 3.3 24 181-204 11-34 (192)
194 1xjc_A MOBB protein homolog; s 94.3 0.023 7.7E-07 49.1 3.0 24 181-204 3-26 (169)
195 1j8m_F SRP54, signal recogniti 94.3 0.21 7.3E-06 47.2 10.1 23 182-204 98-120 (297)
196 1aky_A Adenylate kinase; ATP:A 94.3 0.023 7.7E-07 51.2 3.1 23 182-204 4-26 (220)
197 3ney_A 55 kDa erythrocyte memb 94.3 0.025 8.7E-07 50.1 3.3 24 181-204 18-41 (197)
198 4e22_A Cytidylate kinase; P-lo 94.3 0.025 8.6E-07 52.3 3.4 23 182-204 27-49 (252)
199 1htw_A HI0065; nucleotide-bind 94.3 0.031 1.1E-06 47.7 3.7 24 181-204 32-55 (158)
200 1nn5_A Similar to deoxythymidy 94.2 0.021 7.3E-07 50.9 2.8 23 182-204 9-31 (215)
201 2pez_A Bifunctional 3'-phospho 94.2 0.028 9.5E-07 48.7 3.5 24 181-204 4-27 (179)
202 3l0o_A Transcription terminati 94.2 0.19 6.4E-06 49.2 9.4 53 169-223 163-216 (427)
203 1g41_A Heat shock protein HSLU 94.2 0.032 1.1E-06 55.9 4.2 46 159-204 15-72 (444)
204 1z6g_A Guanylate kinase; struc 94.2 0.021 7.2E-07 51.5 2.7 23 182-204 23-45 (218)
205 2wwf_A Thymidilate kinase, put 94.2 0.021 7.3E-07 50.8 2.7 23 182-204 10-32 (212)
206 2v54_A DTMP kinase, thymidylat 94.1 0.027 9.2E-07 49.8 3.3 23 182-204 4-26 (204)
207 1zd8_A GTP:AMP phosphotransfer 94.1 0.022 7.5E-07 51.6 2.6 23 182-204 7-29 (227)
208 2z0h_A DTMP kinase, thymidylat 94.1 0.026 9E-07 49.5 3.0 21 184-204 2-22 (197)
209 2pt7_A CAG-ALFA; ATPase, prote 94.1 0.18 6.2E-06 48.5 9.2 88 183-284 172-259 (330)
210 1m7g_A Adenylylsulfate kinase; 94.0 0.031 1.1E-06 49.9 3.5 23 182-204 25-47 (211)
211 3fb4_A Adenylate kinase; psych 94.0 0.026 9E-07 50.5 3.0 21 184-204 2-22 (216)
212 2ewv_A Twitching motility prot 94.0 0.12 4.1E-06 50.6 8.0 107 181-303 135-243 (372)
213 1zu4_A FTSY; GTPase, signal re 94.0 0.06 2.1E-06 51.6 5.7 24 181-204 104-127 (320)
214 1vht_A Dephospho-COA kinase; s 94.0 0.032 1.1E-06 50.0 3.6 23 182-204 4-26 (218)
215 1s96_A Guanylate kinase, GMP k 94.0 0.029 1E-06 50.7 3.3 24 181-204 15-38 (219)
216 1rj9_A FTSY, signal recognitio 93.9 0.032 1.1E-06 53.2 3.5 24 181-204 101-124 (304)
217 1sq5_A Pantothenate kinase; P- 93.9 0.059 2E-06 51.4 5.4 24 181-204 79-102 (308)
218 3dl0_A Adenylate kinase; phosp 93.9 0.029 1E-06 50.2 3.0 21 184-204 2-22 (216)
219 1ls1_A Signal recognition part 93.9 0.13 4.4E-06 48.7 7.6 23 182-204 98-120 (295)
220 2f6r_A COA synthase, bifunctio 93.9 0.032 1.1E-06 52.5 3.4 24 181-204 74-97 (281)
221 3cmu_A Protein RECA, recombina 93.8 0.097 3.3E-06 61.5 7.9 89 181-275 1426-1515(2050)
222 3zvl_A Bifunctional polynucleo 93.8 0.17 6E-06 50.3 8.9 24 181-204 257-280 (416)
223 2ck3_D ATP synthase subunit be 93.8 0.16 5.4E-06 51.0 8.5 64 170-235 142-207 (482)
224 2ehv_A Hypothetical protein PH 93.8 0.033 1.1E-06 50.9 3.3 23 182-204 30-52 (251)
225 3tif_A Uncharacterized ABC tra 93.8 0.056 1.9E-06 49.3 4.8 23 182-204 31-53 (235)
226 2ffh_A Protein (FFH); SRP54, s 93.8 0.15 5.2E-06 50.7 8.3 24 181-204 97-120 (425)
227 1zak_A Adenylate kinase; ATP:A 93.8 0.024 8.1E-07 51.1 2.3 23 182-204 5-27 (222)
228 2r6a_A DNAB helicase, replicat 93.7 0.29 1E-05 49.2 10.5 50 181-233 202-252 (454)
229 3b9q_A Chloroplast SRP recepto 93.7 0.04 1.4E-06 52.4 3.8 24 181-204 99-122 (302)
230 2onk_A Molybdate/tungstate ABC 93.6 0.038 1.3E-06 50.7 3.3 22 183-204 25-46 (240)
231 1gtv_A TMK, thymidylate kinase 93.6 0.015 5.1E-07 51.9 0.6 21 184-204 2-22 (214)
232 2i3b_A HCR-ntpase, human cance 93.6 0.032 1.1E-06 49.2 2.7 22 184-205 3-24 (189)
233 3lnc_A Guanylate kinase, GMP k 93.6 0.026 8.9E-07 51.2 2.1 23 182-204 27-50 (231)
234 3ake_A Cytidylate kinase; CMP 93.6 0.037 1.3E-06 49.0 3.0 21 184-204 4-24 (208)
235 1b0u_A Histidine permease; ABC 93.5 0.066 2.3E-06 49.8 4.9 23 182-204 32-54 (262)
236 2wji_A Ferrous iron transport 93.5 0.058 2E-06 45.8 4.2 23 183-205 4-26 (165)
237 3gfo_A Cobalt import ATP-bindi 93.5 0.063 2.2E-06 50.3 4.7 23 182-204 34-56 (275)
238 3k1j_A LON protease, ATP-depen 93.5 0.098 3.3E-06 54.8 6.6 42 159-204 41-82 (604)
239 3nwj_A ATSK2; P loop, shikimat 93.4 0.031 1E-06 51.7 2.3 23 182-204 48-70 (250)
240 3be4_A Adenylate kinase; malar 93.4 0.032 1.1E-06 50.1 2.4 23 182-204 5-27 (217)
241 1q57_A DNA primase/helicase; d 93.4 0.35 1.2E-05 49.3 10.5 53 180-235 240-293 (503)
242 2f1r_A Molybdopterin-guanine d 93.4 0.024 8.3E-07 49.1 1.5 22 183-204 3-24 (171)
243 1tue_A Replication protein E1; 93.4 0.059 2E-06 47.9 4.0 36 168-204 45-80 (212)
244 1fx0_B ATP synthase beta chain 93.4 0.21 7.2E-06 50.3 8.4 62 171-234 155-218 (498)
245 3a8t_A Adenylate isopentenyltr 93.3 0.049 1.7E-06 52.4 3.6 23 182-204 40-62 (339)
246 2pcj_A ABC transporter, lipopr 93.3 0.039 1.3E-06 50.0 2.7 23 182-204 30-52 (224)
247 1np6_A Molybdopterin-guanine d 93.3 0.044 1.5E-06 47.6 3.0 23 182-204 6-28 (174)
248 3b85_A Phosphate starvation-in 93.3 0.038 1.3E-06 49.5 2.7 23 182-204 22-44 (208)
249 2cbz_A Multidrug resistance-as 93.3 0.046 1.6E-06 50.0 3.2 23 182-204 31-53 (237)
250 3d3q_A TRNA delta(2)-isopenten 93.3 0.045 1.5E-06 52.8 3.3 22 183-204 8-29 (340)
251 2xb4_A Adenylate kinase; ATP-b 93.2 0.045 1.5E-06 49.5 3.1 21 184-204 2-22 (223)
252 3sr0_A Adenylate kinase; phosp 93.2 0.046 1.6E-06 48.9 3.0 21 184-204 2-22 (206)
253 1svm_A Large T antigen; AAA+ f 93.1 0.088 3E-06 51.6 5.2 35 170-204 157-191 (377)
254 1vpl_A ABC transporter, ATP-bi 93.1 0.085 2.9E-06 48.8 4.9 23 182-204 41-63 (256)
255 1r6b_X CLPA protein; AAA+, N-t 93.1 0.099 3.4E-06 56.4 6.1 46 159-204 458-510 (758)
256 2ff7_A Alpha-hemolysin translo 93.1 0.08 2.7E-06 48.7 4.7 23 182-204 35-57 (247)
257 2e87_A Hypothetical protein PH 93.1 1.7 5.8E-05 42.0 14.5 25 181-205 166-190 (357)
258 1mv5_A LMRA, multidrug resista 93.1 0.057 1.9E-06 49.6 3.6 24 181-204 27-50 (243)
259 2og2_A Putative signal recogni 93.1 0.056 1.9E-06 52.6 3.8 24 181-204 156-179 (359)
260 1ak2_A Adenylate kinase isoenz 93.1 0.051 1.7E-06 49.4 3.3 23 182-204 16-38 (233)
261 3r20_A Cytidylate kinase; stru 93.1 0.049 1.7E-06 49.7 3.1 23 182-204 9-31 (233)
262 2zej_A Dardarin, leucine-rich 93.1 0.049 1.7E-06 47.3 3.0 22 184-205 4-25 (184)
263 1yrb_A ATP(GTP)binding protein 93.1 0.057 1.9E-06 49.8 3.6 24 181-204 13-36 (262)
264 1ltq_A Polynucleotide kinase; 93.0 0.051 1.7E-06 51.4 3.3 22 183-204 3-24 (301)
265 1e4v_A Adenylate kinase; trans 93.0 0.043 1.5E-06 49.1 2.7 21 184-204 2-22 (214)
266 2ixe_A Antigen peptide transpo 93.0 0.087 3E-06 49.2 4.8 24 181-204 44-67 (271)
267 1ji0_A ABC transporter; ATP bi 93.0 0.05 1.7E-06 49.9 3.1 23 182-204 32-54 (240)
268 3hjn_A DTMP kinase, thymidylat 93.0 0.072 2.4E-06 47.2 4.0 45 184-230 2-46 (197)
269 4eaq_A DTMP kinase, thymidylat 93.0 0.1 3.4E-06 47.4 5.1 25 181-205 25-49 (229)
270 2olj_A Amino acid ABC transpor 93.0 0.053 1.8E-06 50.4 3.3 24 181-204 49-72 (263)
271 2d2e_A SUFC protein; ABC-ATPas 93.0 0.054 1.8E-06 50.0 3.2 23 182-204 29-51 (250)
272 4g1u_C Hemin import ATP-bindin 93.0 0.051 1.7E-06 50.7 3.1 23 182-204 37-59 (266)
273 1g6h_A High-affinity branched- 93.0 0.051 1.7E-06 50.4 3.1 23 182-204 33-55 (257)
274 3crm_A TRNA delta(2)-isopenten 92.9 0.055 1.9E-06 51.8 3.3 22 183-204 6-27 (323)
275 2pze_A Cystic fibrosis transme 92.9 0.054 1.9E-06 49.2 3.1 23 182-204 34-56 (229)
276 1sgw_A Putative ABC transporte 92.9 0.046 1.6E-06 49.2 2.6 23 182-204 35-57 (214)
277 2q6t_A DNAB replication FORK h 92.9 0.4 1.4E-05 48.0 9.8 64 169-236 188-252 (444)
278 2yz2_A Putative ABC transporte 92.9 0.095 3.3E-06 48.8 4.8 23 182-204 33-55 (266)
279 1fzq_A ADP-ribosylation factor 92.8 0.069 2.4E-06 46.2 3.6 26 180-205 14-39 (181)
280 2zu0_C Probable ATP-dependent 92.8 0.061 2.1E-06 50.1 3.5 23 182-204 46-68 (267)
281 2dyk_A GTP-binding protein; GT 92.8 0.067 2.3E-06 44.8 3.4 23 183-205 2-24 (161)
282 2ghi_A Transport protein; mult 92.7 0.06 2E-06 50.0 3.2 23 182-204 46-68 (260)
283 3exa_A TRNA delta(2)-isopenten 92.7 0.064 2.2E-06 51.0 3.4 23 182-204 3-25 (322)
284 1oix_A RAS-related protein RAB 92.7 0.052 1.8E-06 47.5 2.7 24 182-205 29-52 (191)
285 1a7j_A Phosphoribulokinase; tr 92.7 0.033 1.1E-06 52.7 1.5 24 181-204 4-27 (290)
286 2dr3_A UPF0273 protein PH0284; 92.7 0.069 2.4E-06 48.5 3.6 45 182-230 23-67 (247)
287 3cf2_A TER ATPase, transitiona 92.7 0.055 1.9E-06 58.3 3.3 95 157-275 475-580 (806)
288 2eyu_A Twitching motility prot 92.7 0.074 2.5E-06 49.4 3.8 109 181-304 24-133 (261)
289 2vp4_A Deoxynucleoside kinase; 92.7 0.058 2E-06 49.0 3.0 24 181-204 19-42 (230)
290 2qi9_C Vitamin B12 import ATP- 92.6 0.061 2.1E-06 49.6 3.1 23 182-204 26-48 (249)
291 2lkc_A Translation initiation 92.6 0.11 3.6E-06 44.4 4.5 25 181-205 7-31 (178)
292 2f9l_A RAB11B, member RAS onco 92.6 0.059 2E-06 47.4 2.8 24 182-205 5-28 (199)
293 2wjg_A FEOB, ferrous iron tran 92.5 0.081 2.8E-06 45.7 3.7 24 182-205 7-30 (188)
294 2ihy_A ABC transporter, ATP-bi 92.5 0.064 2.2E-06 50.3 3.1 23 182-204 47-69 (279)
295 2nq2_C Hypothetical ABC transp 92.5 0.065 2.2E-06 49.5 3.1 23 182-204 31-53 (253)
296 1q3t_A Cytidylate kinase; nucl 92.5 0.068 2.3E-06 48.6 3.2 25 180-204 14-38 (236)
297 2ged_A SR-beta, signal recogni 92.5 0.08 2.7E-06 46.0 3.6 25 181-205 47-71 (193)
298 3cmu_A Protein RECA, recombina 92.4 0.26 9E-06 58.0 8.6 102 168-275 368-471 (2050)
299 2v9p_A Replication protein E1; 92.4 0.069 2.4E-06 50.8 3.2 24 181-204 125-148 (305)
300 1tq4_A IIGP1, interferon-induc 92.3 0.067 2.3E-06 53.1 3.2 24 181-204 68-91 (413)
301 2qm8_A GTPase/ATPase; G protei 92.3 0.13 4.4E-06 49.7 5.1 34 171-204 44-77 (337)
302 3foz_A TRNA delta(2)-isopenten 92.3 0.087 3E-06 50.0 3.8 24 181-204 9-32 (316)
303 2v3c_C SRP54, signal recogniti 92.3 0.078 2.7E-06 53.1 3.7 23 182-204 99-121 (432)
304 2f7s_A C25KG, RAS-related prot 92.3 0.71 2.4E-05 40.7 9.8 25 181-205 24-48 (217)
305 3end_A Light-independent proto 92.3 0.11 3.9E-06 49.1 4.6 41 180-222 39-79 (307)
306 2nzj_A GTP-binding protein REM 92.2 0.078 2.7E-06 45.0 3.1 24 182-205 4-27 (175)
307 2j37_W Signal recognition part 92.2 0.13 4.4E-06 52.5 5.0 24 181-204 100-123 (504)
308 1z2a_A RAS-related protein RAB 92.1 0.074 2.5E-06 44.8 2.8 24 182-205 5-28 (168)
309 1z08_A RAS-related protein RAB 92.1 0.099 3.4E-06 44.1 3.6 24 182-205 6-29 (170)
310 1u0j_A DNA replication protein 92.0 0.14 4.9E-06 47.4 4.8 35 170-204 92-126 (267)
311 3cmw_A Protein RECA, recombina 92.0 0.23 7.9E-06 57.6 7.5 90 181-276 382-472 (1706)
312 3bgw_A DNAB-like replicative h 92.0 0.35 1.2E-05 48.5 8.1 61 169-234 185-246 (444)
313 2ce2_X GTPase HRAS; signaling 92.0 0.072 2.5E-06 44.6 2.6 22 184-205 5-26 (166)
314 1cr0_A DNA primase/helicase; R 92.0 0.078 2.7E-06 50.0 3.0 39 181-221 34-73 (296)
315 2p67_A LAO/AO transport system 91.9 0.13 4.6E-06 49.6 4.7 25 180-204 54-78 (341)
316 2qmh_A HPR kinase/phosphorylas 91.9 0.099 3.4E-06 46.2 3.3 23 182-204 34-56 (205)
317 2erx_A GTP-binding protein DI- 91.8 0.092 3.2E-06 44.3 3.1 23 183-205 4-26 (172)
318 3q85_A GTP-binding protein REM 91.8 0.091 3.1E-06 44.4 3.1 22 183-204 3-24 (169)
319 3nh6_A ATP-binding cassette SU 91.8 0.075 2.6E-06 50.6 2.8 24 181-204 79-102 (306)
320 1u8z_A RAS-related protein RAL 91.8 0.091 3.1E-06 44.1 3.0 23 183-205 5-27 (168)
321 3con_A GTPase NRAS; structural 91.8 0.084 2.9E-06 45.8 2.8 23 183-205 22-44 (190)
322 3def_A T7I23.11 protein; chlor 91.7 0.18 6.2E-06 46.6 5.3 37 169-205 23-59 (262)
323 1nij_A Hypothetical protein YJ 91.7 0.079 2.7E-06 50.7 2.8 25 181-205 3-27 (318)
324 2ocp_A DGK, deoxyguanosine kin 91.7 0.091 3.1E-06 47.9 3.1 23 182-204 2-24 (241)
325 1g8f_A Sulfate adenylyltransfe 91.6 0.12 4.2E-06 52.7 4.2 46 159-204 372-417 (511)
326 1cp2_A CP2, nitrogenase iron p 91.6 0.14 4.8E-06 47.3 4.4 38 183-222 2-39 (269)
327 1h65_A Chloroplast outer envel 91.6 0.19 6.5E-06 46.7 5.2 36 170-205 27-62 (270)
328 3sop_A Neuronal-specific septi 91.6 0.086 2.9E-06 49.2 2.8 21 184-204 4-24 (270)
329 4edh_A DTMP kinase, thymidylat 91.6 0.26 8.7E-06 44.2 5.9 23 182-204 6-28 (213)
330 1c1y_A RAS-related protein RAP 91.5 0.093 3.2E-06 44.1 2.8 23 183-205 4-26 (167)
331 1z0j_A RAB-22, RAS-related pro 91.5 0.1 3.5E-06 44.0 3.1 23 183-205 7-29 (170)
332 3vr4_D V-type sodium ATPase su 91.5 0.12 4E-06 51.7 3.8 91 183-275 152-258 (465)
333 3tw8_B RAS-related protein RAB 91.5 0.14 4.8E-06 43.6 3.9 25 181-205 8-32 (181)
334 1ek0_A Protein (GTP-binding pr 91.5 0.1 3.5E-06 43.9 3.0 22 184-205 5-26 (170)
335 1kao_A RAP2A; GTP-binding prot 91.5 0.097 3.3E-06 43.9 2.9 23 183-205 4-26 (167)
336 3q72_A GTP-binding protein RAD 91.5 0.082 2.8E-06 44.5 2.4 22 184-205 4-25 (166)
337 2gj8_A MNME, tRNA modification 91.5 0.092 3.1E-06 45.0 2.7 23 183-205 5-27 (172)
338 2r8r_A Sensor protein; KDPD, P 91.5 0.17 5.7E-06 45.7 4.5 108 183-304 7-127 (228)
339 2www_A Methylmalonic aciduria 91.5 0.12 4.2E-06 50.1 3.8 24 181-204 73-96 (349)
340 1p5z_B DCK, deoxycytidine kina 91.4 0.079 2.7E-06 49.1 2.3 24 181-204 23-46 (263)
341 3mfy_A V-type ATP synthase alp 91.4 0.42 1.4E-05 48.8 7.7 53 170-227 216-268 (588)
342 2bbs_A Cystic fibrosis transme 91.3 0.097 3.3E-06 49.4 2.9 24 181-204 63-86 (290)
343 3ihw_A Centg3; RAS, centaurin, 91.3 0.11 3.7E-06 45.1 3.0 24 182-205 20-43 (184)
344 1nrj_B SR-beta, signal recogni 91.3 0.11 3.9E-06 46.1 3.2 25 181-205 11-35 (218)
345 1r8s_A ADP-ribosylation factor 91.2 0.11 3.6E-06 43.7 2.8 21 185-205 3-23 (164)
346 2hxs_A RAB-26, RAS-related pro 91.1 0.12 4.1E-06 44.0 3.1 24 182-205 6-29 (178)
347 1wms_A RAB-9, RAB9, RAS-relate 91.1 0.12 4E-06 44.1 3.0 24 182-205 7-30 (177)
348 1svi_A GTP-binding protein YSX 91.1 0.11 3.8E-06 45.1 2.9 25 181-205 22-46 (195)
349 1m7b_A RND3/RHOE small GTP-bin 91.1 0.1 3.4E-06 45.1 2.6 24 182-205 7-30 (184)
350 1ky3_A GTP-binding protein YPT 91.0 0.15 5E-06 43.5 3.6 25 181-205 7-31 (182)
351 3c5c_A RAS-like protein 12; GD 91.0 0.12 4E-06 44.9 3.0 24 182-205 21-44 (187)
352 1pui_A ENGB, probable GTP-bind 91.0 0.076 2.6E-06 46.9 1.8 24 182-205 26-49 (210)
353 1lw7_A Transcriptional regulat 91.0 0.13 4.4E-06 50.2 3.5 23 182-204 170-192 (365)
354 1r2q_A RAS-related protein RAB 91.0 0.12 4E-06 43.6 2.8 24 182-205 6-29 (170)
355 3tui_C Methionine import ATP-b 91.0 0.13 4.5E-06 50.1 3.5 23 182-204 54-76 (366)
356 2fn4_A P23, RAS-related protei 90.9 0.15 5E-06 43.5 3.5 25 181-205 8-32 (181)
357 3kkq_A RAS-related protein M-R 90.9 0.14 4.9E-06 43.9 3.4 25 181-205 17-41 (183)
358 4dsu_A GTPase KRAS, isoform 2B 90.9 0.15 5E-06 43.9 3.5 24 182-205 4-27 (189)
359 3kta_A Chromosome segregation 90.9 0.12 4.2E-06 44.6 2.9 22 183-204 27-48 (182)
360 3eph_A TRNA isopentenyltransfe 90.8 0.12 4E-06 51.0 3.0 23 182-204 2-24 (409)
361 4gzl_A RAS-related C3 botulinu 90.8 0.15 5.2E-06 44.9 3.6 24 182-205 30-53 (204)
362 3cbq_A GTP-binding protein REM 90.8 0.11 3.7E-06 45.6 2.6 24 181-204 22-45 (195)
363 1z0f_A RAB14, member RAS oncog 90.8 0.12 4.1E-06 43.9 2.8 25 181-205 14-38 (179)
364 3pqc_A Probable GTP-binding pr 90.8 0.12 4.3E-06 44.6 2.9 25 181-205 22-46 (195)
365 1upt_A ARL1, ADP-ribosylation 90.8 0.17 5.9E-06 42.6 3.7 24 182-205 7-30 (171)
366 2cxx_A Probable GTP-binding pr 90.7 0.11 3.8E-06 44.8 2.5 22 184-205 3-24 (190)
367 4dzz_A Plasmid partitioning pr 90.7 0.2 6.8E-06 44.0 4.3 41 183-225 2-43 (206)
368 3bc1_A RAS-related protein RAB 90.7 0.16 5.5E-06 43.8 3.6 25 181-205 10-34 (195)
369 2afh_E Nitrogenase iron protei 90.7 0.17 5.9E-06 47.4 4.0 39 182-222 2-40 (289)
370 3oaa_A ATP synthase subunit al 90.7 0.38 1.3E-05 48.5 6.6 98 171-275 152-264 (513)
371 1z47_A CYSA, putative ABC-tran 90.7 0.13 4.6E-06 49.9 3.2 23 182-204 41-63 (355)
372 3t1o_A Gliding protein MGLA; G 90.6 0.13 4.3E-06 44.7 2.8 23 182-204 14-36 (198)
373 3d31_A Sulfate/molybdate ABC t 90.6 0.2 7E-06 48.5 4.5 23 182-204 26-48 (348)
374 1g16_A RAS-related protein SEC 90.6 0.11 3.9E-06 43.7 2.4 23 183-205 4-26 (170)
375 3cr8_A Sulfate adenylyltranfer 90.6 0.15 5.3E-06 52.5 3.8 24 181-204 368-391 (552)
376 3kjh_A CO dehydrogenase/acetyl 90.6 0.21 7.3E-06 45.3 4.5 41 185-227 3-43 (254)
377 2h92_A Cytidylate kinase; ross 90.6 0.11 3.9E-06 46.3 2.5 22 183-204 4-25 (219)
378 3fvq_A Fe(3+) IONS import ATP- 90.6 0.12 4.2E-06 50.2 2.9 23 182-204 30-52 (359)
379 1mh1_A RAC1; GTP-binding, GTPa 90.6 0.14 4.6E-06 44.0 2.9 23 183-205 6-28 (186)
380 2axn_A 6-phosphofructo-2-kinas 90.6 0.15 5E-06 52.4 3.6 24 181-204 34-57 (520)
381 2cjw_A GTP-binding protein GEM 90.6 0.14 4.7E-06 44.8 3.0 23 182-204 6-28 (192)
382 2iwr_A Centaurin gamma 1; ANK 90.5 0.099 3.4E-06 44.7 2.0 24 182-205 7-30 (178)
383 2a9k_A RAS-related protein RAL 90.5 0.14 4.8E-06 43.9 3.0 24 182-205 18-41 (187)
384 1vg8_A RAS-related protein RAB 90.5 0.17 5.9E-06 44.3 3.7 25 181-205 7-31 (207)
385 2efe_B Small GTP-binding prote 90.5 0.17 5.9E-06 43.1 3.6 24 182-205 12-35 (181)
386 2yv5_A YJEQ protein; hydrolase 90.5 0.21 7.3E-06 47.3 4.5 31 168-203 156-186 (302)
387 3tkl_A RAS-related protein RAB 90.5 0.23 7.8E-06 43.1 4.4 25 181-205 15-39 (196)
388 3f9v_A Minichromosome maintena 90.4 0.084 2.9E-06 55.2 1.7 47 159-205 295-350 (595)
389 3bwd_D RAC-like GTP-binding pr 90.4 0.14 4.9E-06 43.7 2.9 24 182-205 8-31 (182)
390 2oil_A CATX-8, RAS-related pro 90.4 0.14 4.7E-06 44.6 2.8 25 181-205 24-48 (193)
391 3gmt_A Adenylate kinase; ssgci 90.4 0.14 4.6E-06 46.5 2.8 23 182-204 8-30 (230)
392 3rlf_A Maltose/maltodextrin im 90.4 0.15 5.1E-06 50.0 3.3 23 182-204 29-51 (381)
393 3t5g_A GTP-binding protein RHE 90.4 0.15 5.2E-06 43.6 3.1 24 182-205 6-29 (181)
394 2yyz_A Sugar ABC transporter, 90.4 0.15 5.3E-06 49.5 3.4 23 182-204 29-51 (359)
395 1m2o_B GTP-binding protein SAR 90.4 0.12 4.1E-06 45.0 2.4 24 182-205 23-46 (190)
396 2bme_A RAB4A, RAS-related prot 90.4 0.16 5.4E-06 43.7 3.2 25 181-205 9-33 (186)
397 2atv_A RERG, RAS-like estrogen 90.4 0.15 5E-06 44.6 3.0 24 182-205 28-51 (196)
398 2qu8_A Putative nucleolar GTP- 90.4 0.19 6.4E-06 45.2 3.8 25 181-205 28-52 (228)
399 2it1_A 362AA long hypothetical 90.3 0.16 5.4E-06 49.5 3.5 23 182-204 29-51 (362)
400 1f6b_A SAR1; gtpases, N-termin 90.3 0.1 3.5E-06 45.9 1.9 24 182-205 25-48 (198)
401 2bov_A RAla, RAS-related prote 90.3 0.14 4.9E-06 44.8 2.9 25 181-205 13-37 (206)
402 1p9r_A General secretion pathw 90.3 0.28 9.7E-06 48.7 5.4 24 181-204 166-189 (418)
403 4bas_A ADP-ribosylation factor 90.3 0.17 5.8E-06 44.0 3.4 25 181-205 16-40 (199)
404 1ega_A Protein (GTP-binding pr 90.3 0.16 5.4E-06 48.2 3.3 25 181-205 7-31 (301)
405 2y8e_A RAB-protein 6, GH09086P 90.2 0.16 5.4E-06 43.2 3.0 23 183-205 15-37 (179)
406 1zbd_A Rabphilin-3A; G protein 90.2 0.16 5.4E-06 44.5 3.1 24 182-205 8-31 (203)
407 1zd9_A ADP-ribosylation factor 90.2 0.19 6.6E-06 43.5 3.6 24 182-205 22-45 (188)
408 1g29_1 MALK, maltose transport 90.1 0.16 5.3E-06 49.8 3.2 23 182-204 29-51 (372)
409 2g6b_A RAS-related protein RAB 90.1 0.15 5.1E-06 43.5 2.8 24 182-205 10-33 (180)
410 1v43_A Sugar-binding transport 90.1 0.17 5.8E-06 49.5 3.5 23 182-204 37-59 (372)
411 4dkx_A RAS-related protein RAB 90.1 0.17 5.9E-06 45.4 3.3 22 184-205 15-36 (216)
412 3iqw_A Tail-anchored protein t 90.1 0.33 1.1E-05 46.7 5.4 44 181-226 15-58 (334)
413 3clv_A RAB5 protein, putative; 90.0 0.15 5.2E-06 44.3 2.9 24 182-205 7-30 (208)
414 2q3h_A RAS homolog gene family 90.0 0.17 5.7E-06 44.3 3.1 24 182-205 20-43 (201)
415 3io3_A DEHA2D07832P; chaperone 90.0 0.3 1E-05 47.3 5.1 43 181-225 17-61 (348)
416 3lxx_A GTPase IMAP family memb 90.0 0.2 6.9E-06 45.4 3.7 25 181-205 28-52 (239)
417 3llu_A RAS-related GTP-binding 90.0 0.15 5.1E-06 44.6 2.7 24 182-205 20-43 (196)
418 2fh5_B SR-beta, signal recogni 90.0 0.16 5.5E-06 45.0 2.9 24 182-205 7-30 (214)
419 3fkq_A NTRC-like two-domain pr 90.0 0.27 9.2E-06 48.1 4.8 40 180-221 141-181 (373)
420 2g3y_A GTP-binding protein GEM 89.9 0.17 5.9E-06 45.2 3.1 23 182-204 37-59 (211)
421 1zj6_A ADP-ribosylation factor 89.9 0.34 1.2E-05 41.7 5.0 25 181-205 15-39 (187)
422 1ksh_A ARF-like protein 2; sma 89.9 0.22 7.5E-06 42.9 3.7 26 181-206 17-42 (186)
423 3upu_A ATP-dependent DNA helic 89.9 0.21 7E-06 50.4 4.0 45 158-205 20-68 (459)
424 3reg_A RHO-like small GTPase; 89.9 0.21 7.2E-06 43.4 3.6 24 182-205 23-46 (194)
425 2gf9_A RAS-related protein RAB 89.8 0.17 5.9E-06 43.7 3.0 24 182-205 22-45 (189)
426 3ch4_B Pmkase, phosphomevalona 89.8 0.21 7.1E-06 44.3 3.5 24 181-204 10-33 (202)
427 3v9p_A DTMP kinase, thymidylat 89.8 0.25 8.4E-06 44.8 4.0 23 182-204 25-47 (227)
428 3iev_A GTP-binding protein ERA 89.8 0.2 7E-06 47.5 3.7 26 180-205 8-33 (308)
429 2fg5_A RAB-22B, RAS-related pr 89.7 0.16 5.4E-06 44.2 2.7 24 182-205 23-46 (192)
430 1gwn_A RHO-related GTP-binding 89.7 0.15 5.2E-06 45.1 2.6 24 182-205 28-51 (205)
431 2qe7_A ATP synthase subunit al 89.7 0.53 1.8E-05 47.5 6.7 98 171-275 152-264 (502)
432 1z06_A RAS-related protein RAB 89.7 0.18 6.2E-06 43.6 3.1 24 182-205 20-43 (189)
433 3b1v_A Ferrous iron uptake tra 89.7 0.25 8.7E-06 46.0 4.2 24 182-205 3-26 (272)
434 1ypw_A Transitional endoplasmi 89.7 0.098 3.3E-06 56.8 1.5 49 156-204 474-533 (806)
435 3t34_A Dynamin-related protein 89.7 2.2 7.6E-05 41.2 11.2 25 181-205 33-57 (360)
436 3oes_A GTPase rhebl1; small GT 89.7 0.15 5E-06 44.8 2.4 24 182-205 24-47 (201)
437 2a5j_A RAS-related protein RAB 89.7 0.17 5.8E-06 43.9 2.8 24 182-205 21-44 (191)
438 3vr4_A V-type sodium ATPase ca 89.7 0.92 3.2E-05 46.5 8.5 49 170-223 221-269 (600)
439 2p5s_A RAS and EF-hand domain 89.7 0.18 6.2E-06 44.1 3.0 25 181-205 27-51 (199)
440 1bif_A 6-phosphofructo-2-kinas 89.6 0.19 6.5E-06 50.9 3.5 23 182-204 39-61 (469)
441 2il1_A RAB12; G-protein, GDP, 89.6 0.17 5.8E-06 44.0 2.8 24 182-205 26-49 (192)
442 1x3s_A RAS-related protein RAB 89.6 0.18 6.2E-06 43.6 2.9 24 182-205 15-38 (195)
443 1fx0_A ATP synthase alpha chai 89.6 0.29 9.8E-06 49.5 4.6 86 182-275 163-265 (507)
444 3ug7_A Arsenical pump-driving 89.5 0.45 1.5E-05 46.1 6.0 26 179-204 23-48 (349)
445 1oxx_K GLCV, glucose, ABC tran 89.5 0.13 4.5E-06 49.9 2.1 23 182-204 31-53 (353)
446 4hlc_A DTMP kinase, thymidylat 89.5 0.29 1E-05 43.5 4.3 30 183-214 3-32 (205)
447 2b6h_A ADP-ribosylation factor 89.5 0.16 5.5E-06 44.3 2.6 24 182-205 29-52 (192)
448 3dz8_A RAS-related protein RAB 89.5 0.15 5.3E-06 44.2 2.4 24 182-205 23-46 (191)
449 2qnr_A Septin-2, protein NEDD5 89.5 0.14 4.6E-06 48.7 2.2 21 184-204 20-40 (301)
450 2ew1_A RAS-related protein RAB 89.5 0.15 5.3E-06 44.9 2.4 25 181-205 25-49 (201)
451 2o52_A RAS-related protein RAB 89.4 0.17 5.9E-06 44.4 2.7 25 181-205 24-48 (200)
452 3lv8_A DTMP kinase, thymidylat 89.4 0.32 1.1E-05 44.3 4.5 37 182-219 27-63 (236)
453 2gf0_A GTP-binding protein DI- 89.4 0.16 5.5E-06 44.1 2.5 24 182-205 8-31 (199)
454 3fdi_A Uncharacterized protein 89.4 0.18 6.1E-06 44.8 2.7 23 182-204 6-28 (201)
455 3k53_A Ferrous iron transport 89.3 0.21 7.1E-06 46.4 3.3 24 182-205 3-26 (271)
456 2j1l_A RHO-related GTP-binding 89.3 0.18 6.2E-06 44.8 2.8 24 182-205 34-57 (214)
457 3geh_A MNME, tRNA modification 89.3 0.83 2.8E-05 46.0 7.9 87 66-205 161-247 (462)
458 1moz_A ARL1, ADP-ribosylation 89.3 0.17 5.8E-06 43.4 2.5 25 181-205 17-41 (183)
459 3cph_A RAS-related protein SEC 89.3 0.23 7.8E-06 43.8 3.4 24 182-205 20-43 (213)
460 3cwq_A Para family chromosome 89.2 0.34 1.2E-05 43.0 4.5 44 184-230 2-46 (209)
461 1u0l_A Probable GTPase ENGC; p 89.2 0.31 1.1E-05 46.1 4.5 33 168-205 160-192 (301)
462 1mky_A Probable GTP-binding pr 89.2 0.4 1.4E-05 47.9 5.5 44 162-205 151-203 (439)
463 3thx_B DNA mismatch repair pro 89.2 1.5 5.1E-05 48.0 10.3 23 181-203 672-694 (918)
464 3ld9_A DTMP kinase, thymidylat 89.1 0.25 8.7E-06 44.5 3.6 24 181-204 20-43 (223)
465 2gza_A Type IV secretion syste 89.1 0.15 5.3E-06 49.6 2.3 103 182-291 175-277 (361)
466 1jr3_D DNA polymerase III, del 89.1 1.3 4.3E-05 42.5 8.9 104 170-302 8-115 (343)
467 2r9v_A ATP synthase subunit al 89.1 0.5 1.7E-05 47.8 6.0 59 170-233 164-226 (515)
468 2obl_A ESCN; ATPase, hydrolase 89.0 0.18 6.2E-06 48.8 2.7 24 182-205 71-94 (347)
469 4tmk_A Protein (thymidylate ki 89.0 0.37 1.3E-05 43.1 4.6 23 183-205 4-26 (213)
470 2rcn_A Probable GTPase ENGC; Y 89.0 0.22 7.6E-06 48.3 3.3 23 183-205 216-238 (358)
471 3q3j_B RHO-related GTP-binding 89.0 0.26 9E-06 43.8 3.6 24 182-205 27-50 (214)
472 2zts_A Putative uncharacterize 88.9 0.22 7.6E-06 45.1 3.2 47 181-230 29-75 (251)
473 2fu5_C RAS-related protein RAB 88.9 0.14 4.7E-06 44.0 1.6 24 182-205 8-31 (183)
474 2qag_B Septin-6, protein NEDD5 88.9 0.19 6.6E-06 49.9 2.9 21 185-205 45-65 (427)
475 2bcg_Y Protein YP2, GTP-bindin 88.9 0.19 6.5E-06 44.2 2.6 24 182-205 8-31 (206)
476 1c9k_A COBU, adenosylcobinamid 88.9 0.37 1.3E-05 41.9 4.3 44 185-235 2-46 (180)
477 2fv8_A H6, RHO-related GTP-bin 88.9 0.2 6.8E-06 44.2 2.7 24 182-205 25-48 (207)
478 2h57_A ADP-ribosylation factor 88.9 0.17 5.7E-06 43.9 2.1 25 182-206 21-45 (190)
479 2h17_A ADP-ribosylation factor 88.8 0.17 6E-06 43.4 2.2 24 182-205 21-44 (181)
480 2x77_A ADP-ribosylation factor 88.8 0.31 1E-05 42.1 3.9 25 181-205 21-45 (189)
481 2atx_A Small GTP binding prote 88.8 0.2 6.9E-06 43.5 2.6 24 182-205 18-41 (194)
482 3zq6_A Putative arsenical pump 88.8 0.43 1.5E-05 45.7 5.1 44 182-227 14-57 (324)
483 3gd7_A Fusion complex of cysti 88.7 0.22 7.4E-06 49.1 3.0 23 182-204 47-69 (390)
484 2gks_A Bifunctional SAT/APS ki 88.7 0.33 1.1E-05 50.0 4.6 24 181-204 371-394 (546)
485 2hup_A RAS-related protein RAB 88.6 0.21 7.1E-06 43.9 2.6 25 181-205 28-52 (201)
486 2j0v_A RAC-like GTP-binding pr 88.5 0.21 7.1E-06 44.1 2.6 24 182-205 9-32 (212)
487 2gco_A H9, RHO-related GTP-bin 88.4 0.22 7.5E-06 43.7 2.6 24 182-205 25-48 (201)
488 2qag_C Septin-7; cell cycle, c 88.3 0.23 8E-06 49.3 3.0 21 185-205 34-54 (418)
489 1m8p_A Sulfate adenylyltransfe 88.2 0.36 1.2E-05 50.1 4.5 24 181-204 395-418 (573)
490 1f2t_A RAD50 ABC-ATPase; DNA d 88.2 0.33 1.1E-05 40.7 3.5 23 182-204 23-45 (149)
491 1wf3_A GTP-binding protein; GT 88.2 0.28 9.6E-06 46.4 3.4 25 181-205 6-30 (301)
492 2xtp_A GTPase IMAP family memb 88.1 0.29 9.8E-06 45.0 3.3 25 181-205 21-45 (260)
493 3ozx_A RNAse L inhibitor; ATP 88.1 0.29 9.9E-06 50.4 3.6 24 181-204 24-47 (538)
494 2npi_A Protein CLP1; CLP1-PCF1 88.0 0.18 6.1E-06 50.9 2.0 25 181-205 137-161 (460)
495 4dhe_A Probable GTP-binding pr 88.0 0.17 5.9E-06 45.0 1.7 26 181-206 28-53 (223)
496 1x6v_B Bifunctional 3'-phospho 88.0 0.28 9.5E-06 51.3 3.4 24 181-204 51-74 (630)
497 3a1s_A Iron(II) transport prot 87.9 0.32 1.1E-05 44.9 3.5 24 182-205 5-28 (258)
498 3cmw_A Protein RECA, recombina 87.9 0.59 2E-05 54.3 6.3 89 181-275 1430-1519(1706)
499 3iby_A Ferrous iron transport 87.8 0.26 8.7E-06 45.5 2.8 23 183-205 2-24 (256)
500 3ozx_A RNAse L inhibitor; ATP 87.8 0.26 9E-06 50.7 3.1 24 182-205 294-317 (538)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=3.3e-48 Score=407.99 Aligned_cols=282 Identities=16% Similarity=0.159 Sum_probs=229.2
Q ss_pred ccchhHHHHHHHHHhcC-CCCcEEEEEECCCCChHHHHHHHHhc--CccccCccceEEEEEcCCCC--CHHHHH-HHHHH
Q 041567 162 VGLDDRMEELLDLLIEG-PNQLSVVAILNSIGLDKTAFTAEAYN--SSYVKHYFDHLAWIPAPYHY--DAYQIL-DIVTM 235 (467)
Q Consensus 162 vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~--~~~~~~~F~~~~wv~v~~~~--~~~~~~-~il~~ 235 (467)
|||++++++|.++|..+ +...++|+|+||||+||||||+.+|+ +.+++.+|+.++||++++.+ +...++ .|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 59999999999999765 44689999999999999999999998 67899999999999999985 789999 99999
Q ss_pred hhCCCC--ccccCCCCCHHHHHHHHHHhhCCc-eEEEEEecCCCcchHHHHHHhhcCCCCCcEEEEecCccccccc-cc-
Q 041567 236 FLLPFS--MLSKIKDKDYEMKKINLGEYLMTK-WYLIVLDDVWSTNVLDVVREILLDNQNGSRVLITLTRIKMVTR-FQ- 310 (467)
Q Consensus 236 l~~~~~--~~~~~~~~~~~~~~~~l~~~L~~k-r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivT~TR~~~v~~-~~- 310 (467)
++.... ...+....+.+.+...+++.|+++ ||||||||||+.+.+ .+ +. .+||+|||| ||++.++. ++
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~----~~-~~gs~ilvT-TR~~~v~~~~~~ 283 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW----AQ-ELRLRCLVT-TRDVEISNAASQ 283 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH----HH-HTTCEEEEE-ESBGGGGGGCCS
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc----cc-cCCCEEEEE-cCCHHHHHHcCC
Confidence 987532 122334456678899999999996 999999999998755 11 11 169999999 99998887 52
Q ss_pred ------------------cccc---ccCCCChHHHHHHHHHHcCCChHHHHHHHhc-cCccc-----chhhc-----cch
Q 041567 311 ------------------FENG---ESVRLDLVPTGGPLRVTYQGWPFLILYHGSI-SLEEN-----IREVF-----ETP 358 (467)
Q Consensus 311 ------------------F~~~---~~~~~~~~~~~~~i~~~c~GlPLai~~i~~~-~~~~~-----~~~~l-----~~i 358 (467)
|... ...++.+.+++++|+++|+|+||||+++|+. +.+.. +.+.+ .++
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~~~~i 363 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGV 363 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTT
T ss_pred CCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhcccHHHH
Confidence 4333 1123677889999999999999999999999 77632 11111 227
Q ss_pred hhHHHHhhcCCchhhHHHHh-----------hhccCCCCCccChhHHHHHHHHc--CCCCC-----CHHHHHHHHHHHHH
Q 041567 359 LGLLIVICCKLPFHLKLCFL-----------YLSVFPAHLEISTRQLYQLWIAE--GFIPD-----NSEATAEKYLEQLI 420 (467)
Q Consensus 359 ~~~l~~sy~~L~~~~k~cfl-----------~~s~fp~~~~i~~~~Li~~W~ae--g~i~~-----~~e~~~~~~l~~Lv 420 (467)
..+|.+||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+.. +.++.++ ||++|+
T Consensus 364 ~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~ 438 (549)
T 2a5y_B 364 ECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLS 438 (549)
T ss_dssp CCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTT
T ss_pred HHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHH
Confidence 88999999999999999999 999999999999 8999999 99975 4677777 999999
Q ss_pred hCccccccccCCCCccceEEeChhHHHHHHHhhcccce
Q 041567 421 NRGFVDARKRRAGVTINTCSVPGRCHPVLLAVAFKAEF 458 (467)
Q Consensus 421 ~~~ll~~~~~~~~~~~~~~~mHdlv~~~a~~~~~~e~~ 458 (467)
++|||++...+ +..+|+|||+||+||++++.++++
T Consensus 439 ~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 439 KRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp TBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 99999987542 346899999999999998887654
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6e-41 Score=384.54 Aligned_cols=283 Identities=19% Similarity=0.198 Sum_probs=228.1
Q ss_pred CCCCCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccc-cCcc-ceEEEEEcCCCCCH--HHHH
Q 041567 155 SSKNRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYV-KHYF-DHLAWIPAPYHYDA--YQIL 230 (467)
Q Consensus 155 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~v~~~~~~--~~~~ 230 (467)
|..++.||||++++++|.++|...+...++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+. ...+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 456678999999999999999876667899999999999999999999997443 4555 56779999986543 3345
Q ss_pred -HHHHHhhCCCCccccCCCCCHHHHHHHHHHhhCCc--eEEEEEecCCCcchHHHHHHhhcCCCCCcEEEEecCcccccc
Q 041567 231 -DIVTMFLLPFSMLSKIKDKDYEMKKINLGEYLMTK--WYLIVLDDVWSTNVLDVVREILLDNQNGSRVLITLTRIKMVT 307 (467)
Q Consensus 231 -~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~k--r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivT~TR~~~v~ 307 (467)
.++..+....... .....+.+.+...++..|.++ |+||||||||+...|..+ ++||+|||| ||++.++
T Consensus 200 ~~~~~~l~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvT-tR~~~~~ 270 (1249)
T 3sfz_A 200 QNLCMRLDQEESFS-QRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLT-TRDKSVT 270 (1249)
T ss_dssp HHHHHHHTTTCTTC-SSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEE-ESSTTTT
T ss_pred HHHHHHhhhhcccc-cCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEE-cCCHHHH
Confidence 7777776543211 123457788999999999887 999999999998766543 568999999 9999887
Q ss_pred c-c-c-------------------cccc-ccCCCChHHHHHHHHHHcCCChHHHHHHHhc-cCccc-chhhc--------
Q 041567 308 R-F-Q-------------------FENG-ESVRLDLVPTGGPLRVTYQGWPFLILYHGSI-SLEEN-IREVF-------- 355 (467)
Q Consensus 308 ~-~-~-------------------F~~~-~~~~~~~~~~~~~i~~~c~GlPLai~~i~~~-~~~~~-~~~~l-------- 355 (467)
. + + |... ....+.+.+++++|+++|+|+||||+++|++ +.++. |...+
T Consensus 271 ~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~~~l~~l~~~~~ 350 (1249)
T 3sfz_A 271 DSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQF 350 (1249)
T ss_dssp TTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHHHHHHHHHSCCC
T ss_pred HhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHHHHHHHHhhhhh
Confidence 4 2 2 2222 3345566788999999999999999999999 76543 21111
Q ss_pred -----------cchhhHHHHhhcCCchhhHHHHhhhccCCCCCccChhHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCcc
Q 041567 356 -----------ETPLGLLIVICCKLPFHLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKYLEQLINRGF 424 (467)
Q Consensus 356 -----------~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~e~~~~~~l~~Lv~~~l 424 (467)
..+..+|.+||+.||+++|.||+|||+||+++.|++..++.+|.++ ++.++++|++|+++||
T Consensus 351 ~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl 423 (1249)
T 3sfz_A 351 KRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNKSL 423 (1249)
T ss_dssp CCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTS
T ss_pred hhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHHHhccc
Confidence 1188999999999999999999999999999999999999999765 6789999999999999
Q ss_pred ccccccCCCCccceEEeChhHHHHHHHhhccc
Q 041567 425 VDARKRRAGVTINTCSVPGRCHPVLLAVAFKA 456 (467)
Q Consensus 425 l~~~~~~~~~~~~~~~mHdlv~~~a~~~~~~e 456 (467)
|+... +++..+|+|||+||+|++.++.++
T Consensus 424 ~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 424 LFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp CEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred eEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 99754 344567999999999999997765
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.8e-38 Score=341.37 Aligned_cols=266 Identities=17% Similarity=0.115 Sum_probs=206.5
Q ss_pred CccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccce-EEEEEcCCCCCHHHHH-HHHHHh
Q 041567 159 RNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDH-LAWIPAPYHYDAYQIL-DIVTMF 236 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~v~~~~~~~~~~-~il~~l 236 (467)
+..|||+.++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++ .|+..+
T Consensus 128 k~~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 345999999999999998643 4789999999999999999999987788999997 9999999999988888 877765
Q ss_pred hCCCCc-cccC-----CCCCHHHHHHHHHHhh---CCceEEEEEecCCCcchHHHHHHhhcCCCCCcEEEEecCcccccc
Q 041567 237 LLPFSM-LSKI-----KDKDYEMKKINLGEYL---MTKWYLIVLDDVWSTNVLDVVREILLDNQNGSRVLITLTRIKMVT 307 (467)
Q Consensus 237 ~~~~~~-~~~~-----~~~~~~~~~~~l~~~L---~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivT~TR~~~v~ 307 (467)
....+. .... ...+.+.+...++..| .+||+||||||||+.+.|+.+ + +||+|||| ||++.++
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f----~---pGSRILVT-TRd~~Va 278 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF----N---LSCKILLT-TRFKQVT 278 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH----H---SSCCEEEE-CSCSHHH
T ss_pred hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh----C---CCeEEEEe-ccChHHH
Confidence 431100 0000 0113455667777766 789999999999998888764 2 58999999 9999887
Q ss_pred c-cc------------------------ccccccCCCChHHHHHHHHHHcCCChHHHHHHHhc-cCccc----chhh-cc
Q 041567 308 R-FQ------------------------FENGESVRLDLVPTGGPLRVTYQGWPFLILYHGSI-SLEEN----IREV-FE 356 (467)
Q Consensus 308 ~-~~------------------------F~~~~~~~~~~~~~~~~i~~~c~GlPLai~~i~~~-~~~~~----~~~~-l~ 356 (467)
. +. |... ......++..+ .|+|+||||.++|+. +.+.. |... ..
T Consensus 279 ~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~--~g~~~eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~ 353 (1221)
T 1vt4_I 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKY--LDCRPQDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353 (1221)
T ss_dssp HHHHHHSSCEEEECSSSSCCCHHHHHHHHHHH--HCCCTTTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHHHCSCH
T ss_pred HhcCCCeEEEecCccccCCcCHHHHHHHHHHH--cCCCHHHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHHhcCChh
Confidence 4 21 1111 01112233333 399999999999999 76642 2221 11
Q ss_pred chhhHHHHhhcCCchhh-HHHHhhhccCCCCCccChhHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCccccccccCCCCc
Q 041567 357 TPLGLLIVICCKLPFHL-KLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKYLEQLINRGFVDARKRRAGVT 435 (467)
Q Consensus 357 ~i~~~l~~sy~~L~~~~-k~cfl~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~e~~~~~~l~~Lv~~~ll~~~~~~~~~~ 435 (467)
.+..+|.+||+.||++. |.||+|||+||+++.|+...++.+|+++| ++.++.+|++|+++|||+... .
T Consensus 354 ~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG------eedAe~~L~eLvdRSLLq~d~-----~ 422 (1221)
T 1vt4_I 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSDVMVVVNKLHKYSLVEKQP-----K 422 (1221)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------SHHHHHHHHHHHTSSSSSBCS-----S
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------HHHHHHHHHHHHhhCCEEEeC-----C
Confidence 29999999999999999 99999999999999999999999999986 246899999999999999842 2
Q ss_pred cceEEeChhHHHHH
Q 041567 436 INTCSVPGRCHPVL 449 (467)
Q Consensus 436 ~~~~~mHdlv~~~a 449 (467)
..+|+||||+++++
T Consensus 423 ~~rYrMHDLllELr 436 (1221)
T 1vt4_I 423 ESTISIPSIYLELK 436 (1221)
T ss_dssp SSEEBCCCHHHHHH
T ss_pred CCEEEehHHHHHHh
Confidence 36799999999965
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=323.16 Aligned_cols=279 Identities=19% Similarity=0.215 Sum_probs=215.1
Q ss_pred CCCCCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccc-cCccc-eEEEEEcCCCCCHHHHH-H
Q 041567 155 SSKNRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYV-KHYFD-HLAWIPAPYHYDAYQIL-D 231 (467)
Q Consensus 155 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~-~~~wv~v~~~~~~~~~~-~ 231 (467)
|..++.||||+.++++|.+.|.......++|+|+||||+||||||+.++++.++ ..+|+ .++|+++++. +...++ .
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHH
Confidence 455678999999999999999865556899999999999999999999997655 78894 7999999876 344444 4
Q ss_pred H---HHHhhCCCCccccCCCCCHHHHHHHHHHhhCC--ceEEEEEecCCCcchHHHHHHhhcCCCCCcEEEEecCccccc
Q 041567 232 I---VTMFLLPFSMLSKIKDKDYEMKKINLGEYLMT--KWYLIVLDDVWSTNVLDVVREILLDNQNGSRVLITLTRIKMV 306 (467)
Q Consensus 232 i---l~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~--kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivT~TR~~~v 306 (467)
+ +..++.... .......+.+.....++..+.+ +++||||||+|+...++. + ++|++|||| ||+..+
T Consensus 199 l~~l~~~l~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~----l---~~~~~ilvT-sR~~~~ 269 (591)
T 1z6t_A 199 LQNLCTRLDQDES-FSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA----F---DSQCQILLT-TRDKSV 269 (591)
T ss_dssp HHHHHHHHCSSCC-SCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT----T---CSSCEEEEE-ESCGGG
T ss_pred HHHHHHHhccccc-cccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH----h---cCCCeEEEE-CCCcHH
Confidence 3 344442111 1112345677888888888876 789999999998655432 2 468999999 999987
Q ss_pred cc-cc--------------------cccc-ccCCCChHHHHHHHHHHcCCChHHHHHHHhc-cCccc-chhhcc------
Q 041567 307 TR-FQ--------------------FENG-ESVRLDLVPTGGPLRVTYQGWPFLILYHGSI-SLEEN-IREVFE------ 356 (467)
Q Consensus 307 ~~-~~--------------------F~~~-~~~~~~~~~~~~~i~~~c~GlPLai~~i~~~-~~~~~-~~~~l~------ 356 (467)
+. +. |... ....+...+.+.+|+++|+|+||||..+|+. +.++. |.+.+.
T Consensus 270 ~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~w~~~l~~l~~~~ 349 (591)
T 1z6t_A 270 TDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQ 349 (591)
T ss_dssp GTTCCSCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTTCHHHHHHHHHSCC
T ss_pred HHhcCCCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCchhHHHHHHHHHHhH
Confidence 65 32 2222 2222334678899999999999999999998 66543 322111
Q ss_pred -------------chhhHHHHhhcCCchhhHHHHhhhccCCCCCccChhHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCc
Q 041567 357 -------------TPLGLLIVICCKLPFHLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKYLEQLINRG 423 (467)
Q Consensus 357 -------------~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~e~~~~~~l~~Lv~~~ 423 (467)
.+..++..||+.||++.|.||++||+||+++.|+...+..+|.++ .+.++.++++|+++|
T Consensus 350 ~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~ 422 (591)
T 1z6t_A 350 FKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNKS 422 (591)
T ss_dssp CCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTT
T ss_pred HHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------HHHHHHHHHHHHhCc
Confidence 278899999999999999999999999999999999999999764 456889999999999
Q ss_pred cccccccCCCCccceEEeChhHHHHHHHhh
Q 041567 424 FVDARKRRAGVTINTCSVPGRCHPVLLAVA 453 (467)
Q Consensus 424 ll~~~~~~~~~~~~~~~mHdlv~~~a~~~~ 453 (467)
||+... ++....|+||+++|+|++...
T Consensus 423 Ll~~~~---~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 423 LLFCDR---NGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp SSEEEE---ETTEEEEECCHHHHHHHHHHT
T ss_pred CeEEec---CCCccEEEEcHHHHHHHHhhh
Confidence 998653 233467999999999999873
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.73 E-value=5.4e-18 Score=139.13 Aligned_cols=107 Identities=19% Similarity=0.252 Sum_probs=86.1
Q ss_pred chHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCCC--cCCChHHHHHHHHHHHH
Q 041567 3 IKFRLFSERLRRVLAGEEVTLPDAAKQPIHNLHAEIEIVTSWLSEFEDDMSWLLLQKKGKD--EIDNPDLATVMDEINCF 80 (467)
Q Consensus 3 a~v~~l~~kl~~~l~~~e~~~~~~~~~~~~~L~~~L~~i~~~l~~a~~~~~~~~~~~~~~~--~~~~~~v~~Wl~~l~~~ 80 (467)
|+|+++++||.+++ .+|+.++.++++++++|+++|++|++||.++++ . +..++.++.|+++||++
T Consensus 1 a~v~~ll~KL~~ll-~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~------------~~~~~~d~~vk~W~~~vrdl 67 (115)
T 3qfl_A 1 AAISNLIPKLGELL-TEEFKLHKGVKKNIEDLGKELESMNAALIKIGE------------VPREQLDSQDKLWADEVREL 67 (115)
T ss_dssp CTTCSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------------SCGGGCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHH-HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH------------hccccCCHHHHHHHHHHHHH
Confidence 67899999999999 999999999999999999999999999999998 5 56899999999999999
Q ss_pred HhHHHHHHHHhHhhhhccccCCCcccchhhhHHHHHHHHHHHH
Q 041567 81 TCEFEKVIDTFINSITQQKSQSSCRKDICDALQGLQSRITEIN 123 (467)
Q Consensus 81 ayd~ed~ld~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~l~ 123 (467)
+||+||+||+|.++........ -...+..++++++..+++++
T Consensus 68 aYD~ED~iD~f~~~~~~~~~~~-~~~g~~~~~~k~~~~~~~~~ 109 (115)
T 3qfl_A 68 SYVIEDVVDKFLVQVDGIKSDD-NNNKFKGLMKRTTELLKKVK 109 (115)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCccc-ccchHHHHHHHHHHHHhhhH
Confidence 9999999999999886533111 11223334445555555443
No 6
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.59 E-value=2.1e-14 Score=141.34 Aligned_cols=271 Identities=11% Similarity=0.069 Sum_probs=162.6
Q ss_pred CCCCCCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCC------CHH
Q 041567 154 SSSKNRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHY------DAY 227 (467)
Q Consensus 154 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~------~~~ 227 (467)
++..+..|+||+++++.|.+++..+ +++.|+|++|+|||||++.+++. . . .+|+++.... +..
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHITRE 75 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBCHH
T ss_pred CCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCCHH
Confidence 3456678999999999999998753 68999999999999999999983 2 1 6788765432 555
Q ss_pred HHH-HHHHHhhCC------------C-CccccCCCCCHHHHHHHHHHhhCC-ceEEEEEecCCCcch---------HHHH
Q 041567 228 QIL-DIVTMFLLP------------F-SMLSKIKDKDYEMKKINLGEYLMT-KWYLIVLDDVWSTNV---------LDVV 283 (467)
Q Consensus 228 ~~~-~il~~l~~~------------~-~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~~~~---------~~~l 283 (467)
.++ .+...+... . .........+..++...+.+.... ++++||+||++.... +..+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L 155 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALF 155 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHH
Confidence 666 666654320 0 000001123556677777666643 389999999976332 2333
Q ss_pred HHhhcCCCCCcEEEEecCccccc-c------c-----cc----------cccc-----------ccCCCChHHHHHHHHH
Q 041567 284 REILLDNQNGSRVLITLTRIKMV-T------R-----FQ----------FENG-----------ESVRLDLVPTGGPLRV 330 (467)
Q Consensus 284 ~~~l~~~~~gs~iivT~TR~~~v-~------~-----~~----------F~~~-----------~~~~~~~~~~~~~i~~ 330 (467)
...+. ...+.++|+| ++.... . . .+ |... ....+...+.+..|++
T Consensus 156 ~~~~~-~~~~~~~il~-g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~ 233 (350)
T 2qen_A 156 AYAYD-SLPNLKIILT-GSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVE 233 (350)
T ss_dssp HHHHH-HCTTEEEEEE-ESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred HHHHH-hcCCeEEEEE-CCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 33222 2247788888 765421 0 0 00 1111 0111223457788999
Q ss_pred HcCCChHHHHHHHhc-cCccc----chhhccchhhHHHHhhcCC---chhhHHHHhhhccCCCCCccChhHHHHHHHHcC
Q 041567 331 TYQGWPFLILYHGSI-SLEEN----IREVFETPLGLLIVICCKL---PFHLKLCFLYLSVFPAHLEISTRQLYQLWIAEG 402 (467)
Q Consensus 331 ~c~GlPLai~~i~~~-~~~~~----~~~~l~~i~~~l~~sy~~L---~~~~k~cfl~~s~fp~~~~i~~~~Li~~W~aeg 402 (467)
.|+|.|+++..++.. ..... +......+...+.-.+..+ ++..+..+..++. + ..+...+.....+..
T Consensus 234 ~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~la~---g-~~~~~~l~~~~~~~~ 309 (350)
T 2qen_A 234 LLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRAIAL---G-YNRWSLIRDYLAVKG 309 (350)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-CCSHHHHHHHHHHTT
T ss_pred HhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHh---C-CCCHHHHHHHHHHHh
Confidence 999999999988864 32111 1111111111222222233 6788899998887 2 134455554432211
Q ss_pred CCCCCHHHHHHHHHHHHHhCccccccccCCCCccceEEe-ChhHHHHHH
Q 041567 403 FIPDNSEATAEKYLEQLINRGFVDARKRRAGVTINTCSV-PGRCHPVLL 450 (467)
Q Consensus 403 ~i~~~~e~~~~~~l~~Lv~~~ll~~~~~~~~~~~~~~~m-Hdlv~~~a~ 450 (467)
- .........+++.|.+.+||.... ..|++ |++++.+.+
T Consensus 310 -~-~~~~~~~~~~l~~L~~~gli~~~~-------~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 310 -T-KIPEPRLYALLENLKKMNWIVEED-------NTYKIADPVVATVLR 349 (350)
T ss_dssp -C-CCCHHHHHHHHHHHHHTTSEEEET-------TEEEESSHHHHHHHT
T ss_pred -C-CCCHHHHHHHHHHHHhCCCEEecC-------CEEEEecHHHHHHHc
Confidence 0 112466788999999999998752 23555 788888764
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.55 E-value=2.3e-14 Score=144.61 Aligned_cols=280 Identities=14% Similarity=0.064 Sum_probs=165.4
Q ss_pred CCCccccchhHHHHHHHHH-hcC--C--CCcEEEEE--ECCCCChHHHHHHHHhcCccccCc-----cc-eEEEEEcCCC
Q 041567 157 KNRNTVGLDDRMEELLDLL-IEG--P--NQLSVVAI--LNSIGLDKTAFTAEAYNSSYVKHY-----FD-HLAWIPAPYH 223 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L-~~~--~--~~~~vi~I--~G~gGiGKTtLA~~v~~~~~~~~~-----F~-~~~wv~v~~~ 223 (467)
.+..++||+.+++.|.++| ... + .....+.| +|++|+|||||++.+++. .... |. ..+|+++...
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 97 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYVNAFNA 97 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEEEGGGC
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEEECCCC
Confidence 3477999999999999988 421 1 23456666 999999999999999984 3321 22 3678887777
Q ss_pred CCHHHHH-HHHHHhhCCCCccccCCCCCHHHHHHHHHHhhC--CceEEEEEecCCCc--------chHHHHHHhhcCC--
Q 041567 224 YDAYQIL-DIVTMFLLPFSMLSKIKDKDYEMKKINLGEYLM--TKWYLIVLDDVWST--------NVLDVVREILLDN-- 290 (467)
Q Consensus 224 ~~~~~~~-~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~--------~~~~~l~~~l~~~-- 290 (467)
.+...++ .++.+++...+ ....+...+...+...+. +++++|||||++.. +.+..+...+...
T Consensus 98 ~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~ 173 (412)
T 1w5s_A 98 PNLYTILSLIVRQTGYPIQ----VRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPS 173 (412)
T ss_dssp CSHHHHHHHHHHHHTCCCC----CTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCC
T ss_pred CCHHHHHHHHHHHhCCCCC----CCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhccc
Confidence 7888999 99999876432 122345666777777765 67999999999752 2333333333211
Q ss_pred -C--CCcEEEEecCcccccc-----------c-cc----------------cccc----ccCCCChHHHHHHHHHHcC--
Q 041567 291 -Q--NGSRVLITLTRIKMVT-----------R-FQ----------------FENG----ESVRLDLVPTGGPLRVTYQ-- 333 (467)
Q Consensus 291 -~--~gs~iivT~TR~~~v~-----------~-~~----------------F~~~----~~~~~~~~~~~~~i~~~c~-- 333 (467)
+ ....+|+| |+...+. . .. |... ........+....|++.|+
T Consensus 174 ~~~~~~v~lI~~-~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 252 (412)
T 1w5s_A 174 RDGVNRIGFLLV-ASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGED 252 (412)
T ss_dssp TTSCCBEEEEEE-EEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGG
T ss_pred CCCCceEEEEEE-eccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHh
Confidence 2 34557878 8754321 1 11 1111 1111233567788999999
Q ss_pred ----CChHHHHHHHhc--c-----Ccccc-----hhhccch--hhHHHHhhcCCchhhHHHHhhhccCC--CCCccChhH
Q 041567 334 ----GWPFLILYHGSI--S-----LEENI-----REVFETP--LGLLIVICCKLPFHLKLCFLYLSVFP--AHLEISTRQ 393 (467)
Q Consensus 334 ----GlPLai~~i~~~--~-----~~~~~-----~~~l~~i--~~~l~~sy~~L~~~~k~cfl~~s~fp--~~~~i~~~~ 393 (467)
|.|..+..+... . ....+ ...+... ...+.-++..||++.+.++..++.+. .+..+....
T Consensus 253 ~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~ 332 (412)
T 1w5s_A 253 KGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEAASIQTHELEALSIHELIILRLIAEATLGGMEWINAGL 332 (412)
T ss_dssp GTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHH
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHH
Confidence 999655443321 1 11111 1111111 23455567899999999999888653 233455555
Q ss_pred HHHHHH--H---cCCCCCCHHHHHHHHHHHHHhCccccccccCCCCccceEEeChhH
Q 041567 394 LYQLWI--A---EGFIPDNSEATAEKYLEQLINRGFVDARKRRAGVTINTCSVPGRC 445 (467)
Q Consensus 394 Li~~W~--a---eg~i~~~~e~~~~~~l~~Lv~~~ll~~~~~~~~~~~~~~~mHdlv 445 (467)
+...+. + .|. ..........+++.|++.+||...... .|+..+|++|.+.
T Consensus 333 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~L~~~gli~~~~~~-~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 333 LRQRYEDASLTMYNV-KPRGYTQYHIYLKHLTSLGLVDAKPSG-RGMRGRTTLFRLA 387 (412)
T ss_dssp HHHHHHHHHHHHSCC-CCCCHHHHHHHHHHHHHTTSEEEECC--------CCEEEEC
T ss_pred HHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHhCCCEEeeccc-CCCCCceeEEEeC
Confidence 554442 2 122 112245577899999999999876432 2222345555443
No 8
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.54 E-value=1.7e-13 Score=135.19 Aligned_cols=266 Identities=13% Similarity=0.112 Sum_probs=154.5
Q ss_pred CCCCCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCC-----CCHHHH
Q 041567 155 SSKNRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYH-----YDAYQI 229 (467)
Q Consensus 155 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~-----~~~~~~ 229 (467)
+..+..|+||+++++.|.+ +.. +++.|+|++|+|||||++.+.+. ... ..+|+++... .+...+
T Consensus 9 ~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~ 77 (357)
T 2fna_A 9 KDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKDF 77 (357)
T ss_dssp CCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHHH
T ss_pred CCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHHH
Confidence 3456789999999999999 653 59999999999999999999983 322 2578887642 344555
Q ss_pred H-HHHHHhhC-------------CC-C--ccc---cC-----CCCCHHHHHHHHHHhhCCceEEEEEecCCCc-----ch
Q 041567 230 L-DIVTMFLL-------------PF-S--MLS---KI-----KDKDYEMKKINLGEYLMTKWYLIVLDDVWST-----NV 279 (467)
Q Consensus 230 ~-~il~~l~~-------------~~-~--~~~---~~-----~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-----~~ 279 (467)
+ .+...+.. .. . .+. .. .......+...+.+.-. ++++|||||++.. ..
T Consensus 78 ~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~ 156 (357)
T 2fna_A 78 LLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVN 156 (357)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCC
T ss_pred HHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchh
Confidence 5 54443321 00 0 000 00 12345556666655433 4999999999652 23
Q ss_pred HHHHHHhhcCCCCCcEEEEecCcccccc-------c------------cc---cccc----------ccCCCChHHHHHH
Q 041567 280 LDVVREILLDNQNGSRVLITLTRIKMVT-------R------------FQ---FENG----------ESVRLDLVPTGGP 327 (467)
Q Consensus 280 ~~~l~~~l~~~~~gs~iivT~TR~~~v~-------~------------~~---F~~~----------~~~~~~~~~~~~~ 327 (467)
|..+...+.+...+.++|+| ++..... . +. |... .......... ..
T Consensus 157 ~~~~l~~~~~~~~~~~~i~~-g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~-~~ 234 (357)
T 2fna_A 157 LLPALAYAYDNLKRIKFIMS-GSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY-EV 234 (357)
T ss_dssp CHHHHHHHHHHCTTEEEEEE-ESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH-HH
T ss_pred HHHHHHHHHHcCCCeEEEEE-cCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH-HH
Confidence 33333333322246789999 8764310 0 00 1110 0000011112 78
Q ss_pred HHHHcCCChHHHHHHHhc-cCccc---c-hhhccc----hhhHHH-Hhhc--CCchhhHHHHhhhccCCCCCccChhHHH
Q 041567 328 LRVTYQGWPFLILYHGSI-SLEEN---I-REVFET----PLGLLI-VICC--KLPFHLKLCFLYLSVFPAHLEISTRQLY 395 (467)
Q Consensus 328 i~~~c~GlPLai~~i~~~-~~~~~---~-~~~l~~----i~~~l~-~sy~--~L~~~~k~cfl~~s~fp~~~~i~~~~Li 395 (467)
|++.|+|.|+++..++.. ..... + ...... +...+. +.+. .||+..+..+..++.-+ +...|.
T Consensus 235 i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~g~-----~~~~l~ 309 (357)
T 2fna_A 235 VYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREIARKRYLNIMRTLSKCG-----KWSDVK 309 (357)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCB-----CHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCC-----CHHHHH
Confidence 999999999999988865 32222 1 111111 111222 2221 68888999999998821 444443
Q ss_pred HHHH-HcCC-CCCCHHHHHHHHHHHHHhCccccccccCCCCccceEE-eChhHHHHH
Q 041567 396 QLWI-AEGF-IPDNSEATAEKYLEQLINRGFVDARKRRAGVTINTCS-VPGRCHPVL 449 (467)
Q Consensus 396 ~~W~-aeg~-i~~~~e~~~~~~l~~Lv~~~ll~~~~~~~~~~~~~~~-mHdlv~~~a 449 (467)
...- ..|. + .......+++.|++.+||.... ..|+ -|++++++.
T Consensus 310 ~~~~~~~g~~~---~~~~~~~~L~~L~~~gli~~~~-------~~y~f~~~~~~~~l 356 (357)
T 2fna_A 310 RALELEEGIEI---SDSEIYNYLTQLTKHSWIIKEG-------EKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHCSCC---CHHHHHHHHHHHHHTTSEEESS-------SCEEESSHHHHHHT
T ss_pred HHHHHhcCCCC---CHHHHHHHHHHHHhCCCEEecC-------CEEEecCHHHHHhh
Confidence 3211 1231 2 2456788999999999998653 2366 578988864
No 9
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.37 E-value=2.1e-11 Score=121.66 Aligned_cols=265 Identities=12% Similarity=-0.037 Sum_probs=158.7
Q ss_pred CCccccchhHHHHHHHHHhc--CCCCcEEEEEECCCCChHHHHHHHHhcCccccCc--------cceEEEEEcCCCC-CH
Q 041567 158 NRNTVGLDDRMEELLDLLIE--GPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHY--------FDHLAWIPAPYHY-DA 226 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--------F~~~~wv~v~~~~-~~ 226 (467)
+..++||+++++++.++|.. .....+.+.|+|++|+||||||+.+++. .... ....+|++..... +.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 96 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNE--IEEVKKEDEEYKDVKQAYVNCREVGGTP 96 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHH--HHHHHHHSSSSTTCEEEEEEHHHHCSCH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhhhcCCCCceEEEEECccCCCCH
Confidence 37799999999999988864 2334568999999999999999999983 3221 2356788877766 88
Q ss_pred HHHH-HHHHHhhCCCCccccCCCCCHHHHHHHHHHhhCCceEEEEEecCCCcch--HHHH-HHhhcCCCCCcEEEEecCc
Q 041567 227 YQIL-DIVTMFLLPFSMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWSTNV--LDVV-REILLDNQNGSRVLITLTR 302 (467)
Q Consensus 227 ~~~~-~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~--~~~l-~~~l~~~~~gs~iivT~TR 302 (467)
..++ .++..+..... .....+.......+...+..++.+|||||++.... +..+ ...+.....+..+|+| |+
T Consensus 97 ~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~-t~ 172 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSV---PKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMI-SN 172 (384)
T ss_dssp HHHHHHHHHHHHCSCC---CSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEE-CS
T ss_pred HHHHHHHHHHhcCCCC---CCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEE-EC
Confidence 8888 99988854321 11233456777888888887666999999965321 1222 3333322267888888 88
Q ss_pred cccccc-cc------c------------------ccc-c---cCCCChHHHHHHHHHHcC---CChH-HHHHHHhc---c
Q 041567 303 IKMVTR-FQ------F------------------ENG-E---SVRLDLVPTGGPLRVTYQ---GWPF-LILYHGSI---S 346 (467)
Q Consensus 303 ~~~v~~-~~------F------------------~~~-~---~~~~~~~~~~~~i~~~c~---GlPL-ai~~i~~~---~ 346 (467)
...... +. | ... . ....-..+..+.+++.|+ |.|- |+.++-.+ .
T Consensus 173 ~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 173 DINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp STTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred CCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 753221 11 1 110 0 011222345666777776 7665 44333332 1
Q ss_pred Cc-cc-----chhhccc-hhhHHHHhhcCCchhhHHHHhhhccCCCCCccChhHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 041567 347 LE-EN-----IREVFET-PLGLLIVICCKLPFHLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKYLEQL 419 (467)
Q Consensus 347 ~~-~~-----~~~~l~~-i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~e~~~~~~l~~L 419 (467)
.. .. +...+.. ....+..++..|+++.+..+..++....+..+. ......--..| ..........++++.|
T Consensus 253 ~~~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~~~~~~~~~~~l~~L 330 (384)
T 2qby_B 253 SGGGIIRKEHVDKAIVDYEQERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QKPLSYRRFSDIISEL 330 (384)
T ss_dssp TSSSCCCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CCCCCHHHHHHHHHHH
T ss_pred cCCCccCHHHHHHHHHHHhcchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CCCCCHHHHHHHHHHH
Confidence 11 11 1222222 234566677899988887777666511101111 11112222233 2223456678899999
Q ss_pred HhCcccccccc
Q 041567 420 INRGFVDARKR 430 (467)
Q Consensus 420 v~~~ll~~~~~ 430 (467)
...||+.....
T Consensus 331 ~~~gli~~~~~ 341 (384)
T 2qby_B 331 DMFGIVKIRII 341 (384)
T ss_dssp HHTTSEEEEEE
T ss_pred HhCCCEEEEec
Confidence 99999987643
No 10
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.37 E-value=6.1e-11 Score=118.15 Aligned_cols=265 Identities=14% Similarity=0.083 Sum_probs=159.5
Q ss_pred CCCccccchhHHHHHHHHHhcC--CCCcEEEEEECCCCChHHHHHHHHhcCccccCc------cceEEEEEcCCCCCHHH
Q 041567 157 KNRNTVGLDDRMEELLDLLIEG--PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHY------FDHLAWIPAPYHYDAYQ 228 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~------F~~~~wv~v~~~~~~~~ 228 (467)
.+..++||+.+++.+..+|... ......+.|+|++|+||||||+.+++. .... -...+|++.....+...
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~ 94 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYR 94 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHH
Confidence 3478999999999999988543 334678899999999999999999983 3221 12467888888888889
Q ss_pred HH-HHHHHhhCCCCccccCCCCCHHHHHHHHHHhhC--CceEEEEEecCCCcc----hHHHHHHhhc--CC---CCCcEE
Q 041567 229 IL-DIVTMFLLPFSMLSKIKDKDYEMKKINLGEYLM--TKWYLIVLDDVWSTN----VLDVVREILL--DN---QNGSRV 296 (467)
Q Consensus 229 ~~-~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~----~~~~l~~~l~--~~---~~gs~i 296 (467)
++ .++.+++...+ ....+..+....+...+. +++.+||||+++... ..+.+...+. .. ..+..+
T Consensus 95 ~~~~l~~~l~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 170 (387)
T 2v1u_A 95 VASAIAEAVGVRVP----FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSL 170 (387)
T ss_dssp HHHHHHHHHSCCCC----SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEE
T ss_pred HHHHHHHHhCCCCC----CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEE
Confidence 99 99999976432 233446666777777774 468999999997542 2233332222 11 345677
Q ss_pred EEecCccccccc-cc------ccc-------------------c-c---cCCCChHHHHHHHHHHcC---CCh-HHHHHH
Q 041567 297 LITLTRIKMVTR-FQ------FEN-------------------G-E---SVRLDLVPTGGPLRVTYQ---GWP-FLILYH 342 (467)
Q Consensus 297 ivT~TR~~~v~~-~~------F~~-------------------~-~---~~~~~~~~~~~~i~~~c~---GlP-Lai~~i 342 (467)
|.| |+...... +. |.. . . ....-..+..+.+++.++ |.| .++.++
T Consensus 171 I~~-t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l 249 (387)
T 2v1u_A 171 VGI-TNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLL 249 (387)
T ss_dssp EEE-CSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred EEE-ECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 777 76653321 11 111 0 0 111222344566777777 888 333333
Q ss_pred Hhc-c-----Cccc-----chhhccc-hhhHHHHhhcCCchhhHHHHhhhc-cCCCCCccChhHHHHHH----HHcCCCC
Q 041567 343 GSI-S-----LEEN-----IREVFET-PLGLLIVICCKLPFHLKLCFLYLS-VFPAHLEISTRQLYQLW----IAEGFIP 405 (467)
Q Consensus 343 ~~~-~-----~~~~-----~~~~l~~-i~~~l~~sy~~L~~~~k~cfl~~s-~fp~~~~i~~~~Li~~W----~aeg~i~ 405 (467)
..+ . .... +...+.. ....+.-++..||++.+..+..+. ++.....+....+.+.. -..| ..
T Consensus 250 ~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 328 (387)
T 2v1u_A 250 RVAGEIAERRREERVRREHVYSARAEIERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG-LE 328 (387)
T ss_dssp HHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT-CC
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHHhhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC-CC
Confidence 222 1 1111 1111222 233455677899998877766555 44322344444333332 2234 22
Q ss_pred CCHHHHHHHHHHHHHhCccccccc
Q 041567 406 DNSEATAEKYLEQLINRGFVDARK 429 (467)
Q Consensus 406 ~~~e~~~~~~l~~Lv~~~ll~~~~ 429 (467)
......+..+++.|...|++....
T Consensus 329 ~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 329 HVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCeEEEe
Confidence 234567889999999999999864
No 11
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.32 E-value=1.2e-10 Score=116.31 Aligned_cols=266 Identities=16% Similarity=0.126 Sum_probs=161.0
Q ss_pred CCCccccchhHHHHHHHHHhcC----CCCcEEEEEECCCCChHHHHHHHHhcCccccCcc-ceEEEEEcCCCCCHHHHH-
Q 041567 157 KNRNTVGLDDRMEELLDLLIEG----PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYF-DHLAWIPAPYHYDAYQIL- 230 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~v~~~~~~~~~~- 230 (467)
.+..++||+.+++.+.+++... ....+.+.|+|++|+|||||++.+++ ...... ...+|++.+...+...++
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~i~~~~~~~~~~~~~ 92 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYINGFIYRNFTAIIG 92 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEETTTCCSHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHH--HHhhhcCeeEEEEeCccCCCHHHHHH
Confidence 3467999999999999988752 22234899999999999999999998 343331 346788888888888889
Q ss_pred HHHHHhhCCCCccccCCCCCHHHHHHHHHHhhC--CceEEEEEecCCCc--chHHHHHHhhcCCC----CCcEEEEecCc
Q 041567 231 DIVTMFLLPFSMLSKIKDKDYEMKKINLGEYLM--TKWYLIVLDDVWST--NVLDVVREILLDNQ----NGSRVLITLTR 302 (467)
Q Consensus 231 ~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~--~~~~~l~~~l~~~~----~gs~iivT~TR 302 (467)
.++..++...+ ....+.......+...+. +++.+||||+++.. ..+..+...+.... .+..+|+| |+
T Consensus 93 ~l~~~l~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~-~~ 167 (389)
T 1fnn_A 93 EIARSLNIPFP----RRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIV-GH 167 (389)
T ss_dssp HHHHHTTCCCC----SSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEE-ES
T ss_pred HHHHHhCccCC----CCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEE-EC
Confidence 99988865332 123345666666666664 56889999999653 44555555443211 36677777 76
Q ss_pred cccccc-cc------ccc-------------------c----ccCCCChHHHHHHHHHHc---------CCChHHH-HHH
Q 041567 303 IKMVTR-FQ------FEN-------------------G----ESVRLDLVPTGGPLRVTY---------QGWPFLI-LYH 342 (467)
Q Consensus 303 ~~~v~~-~~------F~~-------------------~----~~~~~~~~~~~~~i~~~c---------~GlPLai-~~i 342 (467)
...... .. |.. . .....-..+....|++.+ +|.|-.+ .++
T Consensus 168 ~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l 247 (389)
T 1fnn_A 168 NDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDIL 247 (389)
T ss_dssp STHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHH
T ss_pred CchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHH
Confidence 553222 11 110 0 001123345667788888 6766433 322
Q ss_pred Hhc-c-----Ccccch-hhcc----c-hhhHHHHhhcCCchhhHHHHhhhccCC---CCCccChhHHHHHHHH----cCC
Q 041567 343 GSI-S-----LEENIR-EVFE----T-PLGLLIVICCKLPFHLKLCFLYLSVFP---AHLEISTRQLYQLWIA----EGF 403 (467)
Q Consensus 343 ~~~-~-----~~~~~~-~~l~----~-i~~~l~~sy~~L~~~~k~cfl~~s~fp---~~~~i~~~~Li~~W~a----eg~ 403 (467)
-.+ . ....+. ..+. . ....+.-.+..||.+.+.++..++.+. .+..+....+...+.. .|.
T Consensus 248 ~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 327 (389)
T 1fnn_A 248 YRSAYAAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGE 327 (389)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHHSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHhhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCC
Confidence 222 1 111111 1111 1 122233446678888888877777554 2214555566554433 232
Q ss_pred CCCCHHHHHHHHHHHHHhCcccccccc
Q 041567 404 IPDNSEATAEKYLEQLINRGFVDARKR 430 (467)
Q Consensus 404 i~~~~e~~~~~~l~~Lv~~~ll~~~~~ 430 (467)
.. .......+++++|...++|.....
T Consensus 328 ~~-~~~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 328 RP-RVHSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp CC-CCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred CC-CCHHHHHHHHHHHHhCCCeEEeee
Confidence 21 234567889999999999988653
No 12
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.26 E-value=7.4e-11 Score=117.42 Aligned_cols=265 Identities=14% Similarity=0.104 Sum_probs=154.2
Q ss_pred CCCccccchhHHHHHHHHHhcC--CCCcEEEEEECCCCChHHHHHHHHhcCccccCcc---ceEEEEEcCCCCCHHHHH-
Q 041567 157 KNRNTVGLDDRMEELLDLLIEG--PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYF---DHLAWIPAPYHYDAYQIL- 230 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~v~~~~~~~~~~- 230 (467)
.+..++||+.+++.+.+++... ......+.|+|++|+|||||++.+++ .....+ ...+|++.....+...++
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 95 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVLA 95 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHHH
Confidence 4478999999999999988752 33466889999999999999999998 443332 246788877666777788
Q ss_pred HHHHHhhCCCCccccCCCCCHHHHHHHHHHhhC--CceEEEEEecCCC------cchHHHHHHhhcC-CCCCcEEEEecC
Q 041567 231 DIVTMFLLPFSMLSKIKDKDYEMKKINLGEYLM--TKWYLIVLDDVWS------TNVLDVVREILLD-NQNGSRVLITLT 301 (467)
Q Consensus 231 ~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~------~~~~~~l~~~l~~-~~~gs~iivT~T 301 (467)
.++..++...+ ....+..+....+...+. +++.+||||+++. .+.+..+...+.. ...+..+|+| |
T Consensus 96 ~i~~~l~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~-~ 170 (386)
T 2qby_A 96 DLLESLDVKVP----FTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGI-T 170 (386)
T ss_dssp HHTTTTSCCCC----SSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEE-E
T ss_pred HHHHHhCCCCC----CCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEE-E
Confidence 88887754322 123345666666666664 4589999999964 2344444444322 2335567777 7
Q ss_pred ccccccc-cc------ccc-------------------c----ccCCCChHHHHHHHHHHcC---CChHH-HHHHHhc-c
Q 041567 302 RIKMVTR-FQ------FEN-------------------G----ESVRLDLVPTGGPLRVTYQ---GWPFL-ILYHGSI-S 346 (467)
Q Consensus 302 R~~~v~~-~~------F~~-------------------~----~~~~~~~~~~~~~i~~~c~---GlPLa-i~~i~~~-~ 346 (467)
+...... +. |.. . .....-..+..+.+++.++ |.|.. +.++..+ .
T Consensus 171 ~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~ 250 (386)
T 2qby_A 171 NDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGE 250 (386)
T ss_dssp SCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 6554322 11 110 0 0112223445566777776 87773 3332222 1
Q ss_pred -----Cccc-----chhhccc-hhhHHHHhhcCCchhhHHHHhhhccCCC-C-CccChhHHHHHH----HHcCCCCCCHH
Q 041567 347 -----LEEN-----IREVFET-PLGLLIVICCKLPFHLKLCFLYLSVFPA-H-LEISTRQLYQLW----IAEGFIPDNSE 409 (467)
Q Consensus 347 -----~~~~-----~~~~l~~-i~~~l~~sy~~L~~~~k~cfl~~s~fp~-~-~~i~~~~Li~~W----~aeg~i~~~~e 409 (467)
.... +...+.. ....+.-++..||++.+..+..++.+.+ + ..+....+.+.. -.-| +.....
T Consensus 251 ~a~~~~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g-~~~~~~ 329 (386)
T 2qby_A 251 IAERMKDTKVKEEYVYMAKEEIERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG-VEAVTQ 329 (386)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-CCCCCH
T ss_pred HHHhcCCCccCHHHHHHHHHHHhhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-CCCCCH
Confidence 1111 1111111 2245666778899887777776663211 1 123333332211 1123 222234
Q ss_pred HHHHHHHHHHHhCccccccc
Q 041567 410 ATAEKYLEQLINRGFVDARK 429 (467)
Q Consensus 410 ~~~~~~l~~Lv~~~ll~~~~ 429 (467)
.....+++.|...|++....
T Consensus 330 ~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 330 RRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp HHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEe
Confidence 56788999999999998753
No 13
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.98 E-value=6.9e-09 Score=95.70 Aligned_cols=177 Identities=12% Similarity=0.023 Sum_probs=95.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhh
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFL 237 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~ 237 (467)
..+++||+..++.+..++..+. ....+.|+|++|+||||||+.+++. ....+... ............+.....
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~ 94 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKG--LNCETGIT----ATPCGVCDNCREIEQGRF 94 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHH--HHCTTCSC----SSCCSCSHHHHHHHTTCC
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCC----CCCCcccHHHHHHhccCC
Confidence 4569999999999999997653 2358889999999999999999873 22211100 000000000001110000
Q ss_pred CCCCccccCCCCCHHHHHHHHHHhh-----CCceEEEEEecCCC--cchHHHHHHhhcCCCCCcEEEEecCccccccc--
Q 041567 238 LPFSMLSKIKDKDYEMKKINLGEYL-----MTKWYLIVLDDVWS--TNVLDVVREILLDNQNGSRVLITLTRIKMVTR-- 308 (467)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iivT~TR~~~v~~-- 308 (467)
..............+. ...+.+.+ .+++.+||+||++. ...++.+...+.....+..+|+| |+......
T Consensus 95 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~-t~~~~~~~~~ 172 (250)
T 1njg_A 95 VDLIEIDAASRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA-TTDPQKLPVT 172 (250)
T ss_dssp SSEEEEETTCGGGHHH-HHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEE-ESCGGGSCHH
T ss_pred cceEEecCcccccHHH-HHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEE-eCChHhCCHH
Confidence 0000000000011112 22222222 34679999999964 45677777777666667888888 76543221
Q ss_pred c-c------c------------ccc--ccCCCChHHHHHHHHHHcCCChHHHHHHH
Q 041567 309 F-Q------F------------ENG--ESVRLDLVPTGGPLRVTYQGWPFLILYHG 343 (467)
Q Consensus 309 ~-~------F------------~~~--~~~~~~~~~~~~~i~~~c~GlPLai~~i~ 343 (467)
. . | ... .....-..+....|++.|+|.|..+..+.
T Consensus 173 l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~ 228 (250)
T 1njg_A 173 ILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLT 228 (250)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 1 1 100 11112234556778888888887765544
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.86 E-value=1.7e-08 Score=91.83 Aligned_cols=124 Identities=12% Similarity=0.092 Sum_probs=78.3
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccC-ccc-eEEEEEcCCCCCHHHHHHHHH
Q 041567 157 KNRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKH-YFD-HLAWIPAPYHYDAYQILDIVT 234 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~-~~~wv~v~~~~~~~~~~~il~ 234 (467)
.-.+++|++..++.+.+++.... .+.+.|+|++|+|||+||+.+++ .... .+. ..+.++.+...+...+...+.
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (226)
T 2chg_A 15 TLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMNASDERGIDVVRHKIK 90 (226)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHH--HHHGGGGGGGEEEEETTCTTCHHHHHHHHH
T ss_pred CHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHH--HHhccccccceEEeccccccChHHHHHHHH
Confidence 34568999999999999998753 33489999999999999999987 3322 121 234444444333332222222
Q ss_pred HhhCCCCccccCCCCCHHHHHHHHHHhhCCceEEEEEecCCCc--chHHHHHHhhcCCCCCcEEEEecCccc
Q 041567 235 MFLLPFSMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWST--NVLDVVREILLDNQNGSRVLITLTRIK 304 (467)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivT~TR~~ 304 (467)
.+..... .-.+++.+||+||++.. ..++.+...+.....+..+|+| |+..
T Consensus 91 ~~~~~~~-------------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~-~~~~ 142 (226)
T 2chg_A 91 EFARTAP-------------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILS-CNYV 142 (226)
T ss_dssp HHHTSCC-------------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEE-ESCG
T ss_pred HHhcccC-------------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEE-eCCh
Confidence 2111100 01257889999999754 4556666666555567888888 7654
No 15
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.70 E-value=8.1e-08 Score=93.23 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=38.7
Q ss_pred CCCccccchhHHHHHHHHHhcC---CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 157 KNRNTVGLDDRMEELLDLLIEG---PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.-.+++|++..++.+...+... ......+.|+|++|+|||+||+.+++
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999988887531 22345788999999999999999988
No 16
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.69 E-value=5.9e-08 Score=93.94 Aligned_cols=123 Identities=15% Similarity=0.146 Sum_probs=77.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccC-cc-ceEEEEEcCCCCCHHHHHHHHHH
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKH-YF-DHLAWIPAPYHYDAYQILDIVTM 235 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F-~~~~wv~v~~~~~~~~~~~il~~ 235 (467)
-.+++|++..++.+.+++..+. .+.+.|+|++|+||||+|+.+++ .... .+ ...++++.+.......+.+++..
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAH--ELLGRSYADGVLELNASDDRGIDVVRNQIKH 95 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHH--HHHGGGHHHHEEEECTTSCCSHHHHHTHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHH--HhcCCcccCCEEEecCccccChHHHHHHHHH
Confidence 3569999999999999998754 33388999999999999999988 3322 12 12445554443332222222222
Q ss_pred hhCCCCccccCCCCCHHHHHHHHHHhh-CCceEEEEEecCCCc--chHHHHHHhhcCCCCCcEEEEecCccc
Q 041567 236 FLLPFSMLSKIKDKDYEMKKINLGEYL-MTKWYLIVLDDVWST--NVLDVVREILLDNQNGSRVLITLTRIK 304 (467)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivT~TR~~ 304 (467)
+..... .+ .+++.+||+||++.. ..++.+...+.....++.+|+| |+..
T Consensus 96 ~~~~~~-------------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~-~~~~ 147 (323)
T 1sxj_B 96 FAQKKL-------------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFA-CNQS 147 (323)
T ss_dssp HHHBCC-------------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEE-ESCG
T ss_pred HHhccc-------------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEE-eCCh
Confidence 221000 01 346889999999753 4455565555555567788887 7553
No 17
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.47 E-value=9.2e-07 Score=85.22 Aligned_cols=114 Identities=10% Similarity=-0.018 Sum_probs=76.7
Q ss_pred ccccchhHHHHHHHHHhcC--CCCcEEEEEECCCCChHHHHHHHHhcCcccc---Ccc--ceEEEEEcCCCCCHHHHH-H
Q 041567 160 NTVGLDDRMEELLDLLIEG--PNQLSVVAILNSIGLDKTAFTAEAYNSSYVK---HYF--DHLAWIPAPYHYDAYQIL-D 231 (467)
Q Consensus 160 ~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~~F--~~~~wv~v~~~~~~~~~~-~ 231 (467)
.+.||+++.++|...|... +...+.+.|+|++|.|||++++.+++..... ... -..+.++.....+...++ .
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 3789999999999888653 3456788999999999999999999842111 111 135677877778888999 9
Q ss_pred HHHHhhCCCCccccCCCCCHHHHHHHHHHh--hCCceEEEEEecCCCc
Q 041567 232 IVTMFLLPFSMLSKIKDKDYEMKKINLGEY--LMTKWYLIVLDDVWST 277 (467)
Q Consensus 232 il~~l~~~~~~~~~~~~~~~~~~~~~l~~~--L~~kr~LlVlDdv~~~ 277 (467)
|++++.+... ......+.+...+... -.+++++++||++..-
T Consensus 101 I~~~L~g~~~----~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l 144 (318)
T 3te6_A 101 IWFAISKENL----CGDISLEALNFYITNVPKAKKRKTLILIQNPENL 144 (318)
T ss_dssp HHHHHSCCC------CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSS
T ss_pred HHHHhcCCCC----CchHHHHHHHHHHHHhhhccCCceEEEEecHHHh
Confidence 9999976421 1122233333333332 2457899999999654
No 18
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.43 E-value=4.4e-07 Score=80.27 Aligned_cols=46 Identities=15% Similarity=0.238 Sum_probs=39.2
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
-..++||++.++++.+.+.... ...+.|+|++|+|||+||+.+++.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999987643 456789999999999999999873
No 19
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.29 E-value=8.4e-06 Score=80.42 Aligned_cols=137 Identities=13% Similarity=0.087 Sum_probs=73.6
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHh
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMF 236 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l 236 (467)
-.+++|++..++.+.+.+..+. ....+.|+|++|+||||+|+.+.+.......+. ...+...... .+....
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~~~~~ 86 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIEQGR 86 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHHHTSC
T ss_pred hhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHHhccC
Confidence 3469999999999999997653 234778999999999999999987321111110 0001101111 111100
Q ss_pred hCCC---CccccCCCCCHHHHHHHHHHh-hCCceEEEEEecCCCc--chHHHHHHhhcCCCCCcEEEEecCcc
Q 041567 237 LLPF---SMLSKIKDKDYEMKKINLGEY-LMTKWYLIVLDDVWST--NVLDVVREILLDNQNGSRVLITLTRI 303 (467)
Q Consensus 237 ~~~~---~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivT~TR~ 303 (467)
.... ............++...+... ..+++.+||+||+... ..++.+...+.....+..+|++ |..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~-~~~ 158 (373)
T 1jr3_A 87 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA-TTD 158 (373)
T ss_dssp CSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEE-ESC
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEE-eCC
Confidence 0000 000000111222222222111 1346789999999643 4566777776655556777777 654
No 20
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.29 E-value=7.2e-07 Score=86.35 Aligned_cols=124 Identities=13% Similarity=0.126 Sum_probs=75.5
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCc-c-ceEEEEEcCCCCCHHHHHHHHH
Q 041567 157 KNRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHY-F-DHLAWIPAPYHYDAYQILDIVT 234 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F-~~~~wv~v~~~~~~~~~~~il~ 234 (467)
.-.+++|++..++.+.+++..+. .+.+.++|++|+||||+|+.+++ ..... + ...+.++.+.......+...+.
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALAR--ELFGENWRHNFLELNASDERGINVIREKVK 98 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHH--HHHGGGHHHHEEEEETTCHHHHHTTHHHHH
T ss_pred CHHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHH--HhcCCcccCceEEeeccccCchHHHHHHHH
Confidence 34569999999999999998763 33489999999999999999988 33211 1 1233444332111111111111
Q ss_pred HhhCCCCccccCCCCCHHHHHHHHHHhhCCceEEEEEecCCCc--chHHHHHHhhcCCCCCcEEEEecCccc
Q 041567 235 MFLLPFSMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWST--NVLDVVREILLDNQNGSRVLITLTRIK 304 (467)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivT~TR~~ 304 (467)
.+....+ ...+++.++|+|+++.. ..++.+...+.....++++|+| |...
T Consensus 99 ~~~~~~~-------------------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~-~~~~ 150 (327)
T 1iqp_A 99 EFARTKP-------------------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILS-CNYS 150 (327)
T ss_dssp HHHHSCC-------------------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEE-ESCG
T ss_pred HHHhhCC-------------------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEE-eCCc
Confidence 1110000 01256789999999754 4566676666655567888888 7654
No 21
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.07 E-value=3.9e-06 Score=73.80 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=39.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
-..++||+..++.+.+.+.... ...+.|+|.+|+|||+||+.+++.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999987643 456789999999999999999873
No 22
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.03 E-value=1.5e-05 Score=67.63 Aligned_cols=112 Identities=6% Similarity=-0.084 Sum_probs=65.0
Q ss_pred ccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCC
Q 041567 160 NTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLP 239 (467)
Q Consensus 160 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~ 239 (467)
+++|+...+.++.+.+..-.....-|.|+|.+|+|||++|+.+++... +...+. + ++.+...+
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~-v-~~~~~~~~-------------- 64 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR-NAQGEF-V-YRELTPDN-------------- 64 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSST-TTTSCC-E-EEECCTTT--------------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCC-ccCCCE-E-EECCCCCc--------------
Confidence 579999999999988754222234467999999999999999998421 111222 2 54443211
Q ss_pred CCccccCCCCCHHHHHHHHHHhhCCceEEEEEecCCCc--chHHHHHHhhcCCCCCcEEEEecCcc
Q 041567 240 FSMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWST--NVLDVVREILLDNQNGSRVLITLTRI 303 (467)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivT~TR~ 303 (467)
...... .+... +.-.|+||++..- .....+...+.......++|.| |..
T Consensus 65 --------~~~~~~---~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~-t~~ 115 (145)
T 3n70_A 65 --------APQLND---FIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGI-GDT 115 (145)
T ss_dssp --------SSCHHH---HHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEE-ESS
T ss_pred --------chhhhc---HHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEE-CCc
Confidence 011111 11111 2346899999654 3445566665544445677777 543
No 23
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.03 E-value=1.1e-05 Score=71.07 Aligned_cols=115 Identities=15% Similarity=0.110 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHhcCC-CCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHhhCCCCc
Q 041567 165 DDRMEELLDLLIEGP-NQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMFLLPFSM 242 (467)
Q Consensus 165 ~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l~~~~~~ 242 (467)
...++.+.+++.+-. .....+.|+|++|+|||||++.+++.......+. ++++ +..++. .+.........
T Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~------~~~~~~~~~~~~~~~~~~- 91 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFF------DTKDLIFRLKHLMDEGKD- 91 (180)
T ss_dssp HHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEE------EHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEE------EHHHHHHHHHHHhcCchH-
Confidence 334444444443322 2357899999999999999999988321122221 2233 344555 55444433211
Q ss_pred cccCCCCCHHHHHHHHHHhhCCceEEEEEecCCC--cchHH--HHHHhhcC-CCCCcEEEEecCc
Q 041567 243 LSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWS--TNVLD--VVREILLD-NQNGSRVLITLTR 302 (467)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~--~~~~~--~l~~~l~~-~~~gs~iivT~TR 302 (467)
. .....+. +.-+|||||++. .+.|. .+...+.. ...|..+|+| |.
T Consensus 92 -------~--~~~~~~~-----~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~t-sn 141 (180)
T 3ec2_A 92 -------T--KFLKTVL-----NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIIT-TN 141 (180)
T ss_dssp -------S--HHHHHHH-----TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred -------H--HHHHHhc-----CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEE-cC
Confidence 1 2222222 456899999973 34443 22222221 1246778888 54
No 24
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.02 E-value=8e-06 Score=77.53 Aligned_cols=49 Identities=14% Similarity=0.204 Sum_probs=39.5
Q ss_pred CCCCccccchhHHHHHHHHHhcC-----------CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 156 SKNRNTVGLDDRMEELLDLLIEG-----------PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..-.+++|.+..+++|.+.+... -....-+.|+|++|+|||+||+.+++
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 44567999999999998877431 12345688999999999999999998
No 25
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.97 E-value=5.4e-06 Score=79.65 Aligned_cols=45 Identities=11% Similarity=0.084 Sum_probs=35.3
Q ss_pred ccccchhHHHHHHHHHhcC-------------CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 160 NTVGLDDRMEELLDLLIEG-------------PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 160 ~~vGr~~~~~~l~~~L~~~-------------~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+++|.+..++.|.+.+... ......+.|+|++|+|||+||+.+++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4789999888888765421 23455788999999999999998877
No 26
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.93 E-value=1.8e-05 Score=70.91 Aligned_cols=95 Identities=13% Similarity=0.040 Sum_probs=54.2
Q ss_pred Cccccch----hHHHHHHHHHhcCCCC--cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-H
Q 041567 159 RNTVGLD----DRMEELLDLLIEGPNQ--LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-D 231 (467)
Q Consensus 159 ~~~vGr~----~~~~~l~~~L~~~~~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~ 231 (467)
.+|++.+ ..++.+.+++...... ...+.|+|.+|+|||+||+.+++ ........++|+++ ..+. .
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~------~~~~~~ 96 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYV------PELFRE 96 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEH------HHHHHH
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEh------HHHHHH
Confidence 3456544 3444555566544221 26788999999999999999998 44433444566654 3444 4
Q ss_pred HHHHhhCCCCccccCCCCCHHHHHHHHHHhhCCceEEEEEecCCC
Q 041567 232 IVTMFLLPFSMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWS 276 (467)
Q Consensus 232 il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 276 (467)
+...... .........+.+ .-+|||||++.
T Consensus 97 ~~~~~~~----------~~~~~~~~~~~~-----~~~lilDei~~ 126 (202)
T 2w58_A 97 LKHSLQD----------QTMNEKLDYIKK-----VPVLMLDDLGA 126 (202)
T ss_dssp HHHC-------------CCCHHHHHHHHH-----SSEEEEEEECC
T ss_pred HHHHhcc----------chHHHHHHHhcC-----CCEEEEcCCCC
Confidence 4433221 112233333332 24999999965
No 27
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.93 E-value=4.8e-05 Score=73.60 Aligned_cols=120 Identities=13% Similarity=0.092 Sum_probs=74.5
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHh
Q 041567 157 KNRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMF 236 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l 236 (467)
.-.+++|.+..++.+.+++..+. ...++.+.|++|+|||++|+.+.+ ... ...+.++.+.. ....+..++...
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~--~l~---~~~~~i~~~~~-~~~~i~~~~~~~ 96 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCH--DVN---ADMMFVNGSDC-KIDFVRGPLTNF 96 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHH--HTT---EEEEEEETTTC-CHHHHHTHHHHH
T ss_pred CHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHH--HhC---CCEEEEccccc-CHHHHHHHHHHH
Confidence 34679999999999999998653 346788889999999999999988 332 23445554432 222222222221
Q ss_pred hCCCCccccCCCCCHHHHHHHHHHhhCCceEEEEEecCCCcc---hHHHHHHhhcCCCCCcEEEEecCccc
Q 041567 237 LLPFSMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWSTN---VLDVVREILLDNQNGSRVLITLTRIK 304 (467)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~---~~~~l~~~l~~~~~gs~iivT~TR~~ 304 (467)
....+ +.+++.+|++|++..-. ..+.+...+.....+..+|+| |...
T Consensus 97 ~~~~~--------------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~-~n~~ 146 (324)
T 3u61_B 97 ASAAS--------------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIIT-ANNI 146 (324)
T ss_dssp HHBCC--------------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEE-ESSG
T ss_pred Hhhcc--------------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEE-eCCc
Confidence 11100 12367899999997543 445555544433345677777 6554
No 28
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.91 E-value=6.1e-06 Score=79.46 Aligned_cols=120 Identities=13% Similarity=0.118 Sum_probs=72.3
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccc-cCccc-eEEEEEcCCCCCHHHHHHHHHH
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYV-KHYFD-HLAWIPAPYHYDAYQILDIVTM 235 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~-~~~wv~v~~~~~~~~~~~il~~ 235 (467)
-.+++|++..++.+.+++..+. .+.+.++|++|+|||++|+.+.+ .. ...+. ..+.++.+.......
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~------- 84 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMNASDERGIDV------- 84 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHH--HHHTTCHHHHCEEEETTSTTCTTT-------
T ss_pred HHHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHH--HhcCCcccCCeEEEeCccccChHH-------
Confidence 3568999999999998887653 33488999999999999999987 32 11111 123344433211111
Q ss_pred hhCCCCccccCCCCCHHHHHHHHHHh--h-CCceEEEEEecCCCc--chHHHHHHhhcCCCCCcEEEEecCccc
Q 041567 236 FLLPFSMLSKIKDKDYEMKKINLGEY--L-MTKWYLIVLDDVWST--NVLDVVREILLDNQNGSRVLITLTRIK 304 (467)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~~~~l~~~--L-~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivT~TR~~ 304 (467)
..+........ + .+++.++|+|++..- ...+.+...+.....++.+|+| |...
T Consensus 85 ---------------~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~-~~~~ 142 (319)
T 2chq_A 85 ---------------VRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILS-CNYV 142 (319)
T ss_dssp ---------------SSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEE-ESCG
T ss_pred ---------------HHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEE-eCCh
Confidence 11111111111 1 256789999998643 3445566666555567778877 6554
No 29
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.90 E-value=6e-05 Score=70.29 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=36.0
Q ss_pred CCccccchhHHHHHHHHHh---cCC-------CCcEEEEEECCCCChHHHHHHHHhc
Q 041567 158 NRNTVGLDDRMEELLDLLI---EGP-------NQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|.+..++.|.+++. ... ...+-+.|+|++|+|||++|+.+++
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3568999988888776543 211 2345678999999999999999998
No 30
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.82 E-value=0.00018 Score=69.85 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=39.8
Q ss_pred CCCccccchhHHHHHHHHHhcC---CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 157 KNRNTVGLDDRMEELLDLLIEG---PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.-.+++|++..++.+..++... ......+.|+|++|+|||+||+.+.+
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 3457999999999999888642 33456688999999999999999987
No 31
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.74 E-value=8.5e-05 Score=71.90 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=38.9
Q ss_pred CCCCccccchhHHHHHHHHHhc----------CCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 156 SKNRNTVGLDDRMEELLDLLIE----------GPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..-.+++|.+..++.|.+.+.. .....+-+.++|++|+|||+||+.+++
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3345789999999999987731 122345788999999999999999998
No 32
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.72 E-value=0.00032 Score=67.87 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=37.8
Q ss_pred CCCccccchhHHHHHHHHHhc---------C-CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 157 KNRNTVGLDDRMEELLDLLIE---------G-PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~---------~-~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.-.+++|.++.++.|.+.+.. + ....+-|.++|++|+|||+||+.+++
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHH
Confidence 345789999999988877632 1 12346788999999999999999998
No 33
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.70 E-value=0.00015 Score=70.86 Aligned_cols=45 Identities=9% Similarity=-0.057 Sum_probs=36.2
Q ss_pred CCccccchhHHHHHHHHH-hcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 158 NRNTVGLDDRMEELLDLL-IEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L-~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|.+...+.+.+++ ..+. ... +.|+|++|+||||+++.+.+
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHH
T ss_pred HHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHH
Confidence 356899999999988887 4432 233 89999999999999998876
No 34
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.69 E-value=8.2e-05 Score=75.28 Aligned_cols=122 Identities=20% Similarity=0.231 Sum_probs=69.1
Q ss_pred Cccc-cchhH--HHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccc--eEEEEEcCCCCCHHHHH-HH
Q 041567 159 RNTV-GLDDR--MEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFD--HLAWIPAPYHYDAYQIL-DI 232 (467)
Q Consensus 159 ~~~v-Gr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~v~~~~~~~~~~-~i 232 (467)
.+|+ |.... ...+......... ...+.|+|++|+||||||+.+++ .....|+ .+++++. ..+. ++
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~------~~~~~~~ 175 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDL 175 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEH------HHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeH------HHHHHHH
Confidence 3455 64433 3334444444332 67789999999999999999998 4444432 2345543 3344 55
Q ss_pred HHHhhCCCCccccCCCCCHHHHHHHHHHhhCCceEEEEEecCCCcc----hHHHHHHhhcC-CCCCcEEEEecCccc
Q 041567 233 VTMFLLPFSMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWSTN----VLDVVREILLD-NQNGSRVLITLTRIK 304 (467)
Q Consensus 233 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~----~~~~l~~~l~~-~~~gs~iivT~TR~~ 304 (467)
...+.... ...+...+..+.-+|++||+.... ..+.+...+.. ...|..||+| |.+.
T Consensus 176 ~~~~~~~~--------------~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIit-t~~~ 237 (440)
T 2z4s_A 176 VDSMKEGK--------------LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVIC-SDRE 237 (440)
T ss_dssp HHHHHTTC--------------HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEE-ESSC
T ss_pred HHHHHccc--------------HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEE-ECCC
Confidence 55544311 112333444467799999996432 23334443321 2346778888 7763
No 35
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.67 E-value=0.00022 Score=69.50 Aligned_cols=135 Identities=15% Similarity=0.126 Sum_probs=74.8
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccc-eEEEEEcCCCCCHHHHHHHHHH
Q 041567 157 KNRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFD-HLAWIPAPYHYDAYQILDIVTM 235 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~il~~ 235 (467)
.-.+++|+++.++.+..++..+. .+.+.++|++|+||||+|+.+.+.......+. ....++.+.......+.+.+..
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKN 112 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHH
T ss_pred CHHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHH
Confidence 34679999999999999987653 23388999999999999999988311111111 2334444443333322232322
Q ss_pred hhCCCCccccCCCCCHHHHHHHHHHhhCCceEEEEEecCCCc--chHHHHHHhhcCCCCCcEEEEecCcc
Q 041567 236 FLLPFSMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWST--NVLDVVREILLDNQNGSRVLITLTRI 303 (467)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivT~TR~ 303 (467)
+..... ...... .....-.+++-+|++|++... ...+.+...+.......++|++ |..
T Consensus 113 ~~~~~~----~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~-~~~ 172 (353)
T 1sxj_D 113 FARLTV----SKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLI-CNY 172 (353)
T ss_dssp HHHSCC----CCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEE-ESC
T ss_pred Hhhhcc----cccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEE-eCc
Confidence 221100 000000 001111235679999998543 3455566655544556677776 543
No 36
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.65 E-value=1.8e-05 Score=72.61 Aligned_cols=60 Identities=10% Similarity=0.070 Sum_probs=39.7
Q ss_pred CCccccc---hhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcC
Q 041567 158 NRNTVGL---DDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAP 221 (467)
Q Consensus 158 ~~~~vGr---~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~ 221 (467)
-.+++|. +..++.+..++... ....+.|+|++|+||||||+.+++ ........+.|++.+
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACA--RANELERRSFYIPLG 89 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEGG
T ss_pred hhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEHH
Confidence 3467763 34555555555543 356788999999999999999988 333333345666654
No 37
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.65 E-value=3.7e-05 Score=65.02 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=33.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 159 RNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..++|++..++++.+.+..-.....-|.|+|.+|+|||++|+.+.+.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 45899999999988887542112234779999999999999999884
No 38
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.64 E-value=0.00045 Score=67.79 Aligned_cols=48 Identities=23% Similarity=0.236 Sum_probs=37.6
Q ss_pred CCccccchhHHHH---HHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 158 NRNTVGLDDRMEE---LLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 158 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
-.+++|++..++. +.+.+..+......+.|+|++|+|||+||+.+.+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999998776 45555555433468899999999999999999983
No 39
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.63 E-value=0.00038 Score=71.92 Aligned_cols=64 Identities=11% Similarity=0.059 Sum_probs=46.8
Q ss_pred CCCccccchhHHHHHHHHHhcC---------------CCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcC
Q 041567 157 KNRNTVGLDDRMEELLDLLIEG---------------PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAP 221 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~---------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~ 221 (467)
.-.+++|++..++++.++|... .+..+.+.|+|++|+||||+|+.+++ .. .+ ..+.++.+
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~--~l--~~-~~i~in~s 111 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQ--EL--GY-DILEQNAS 111 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHH--HT--TC-EEEEECTT
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHH--Hc--CC-CEEEEeCC
Confidence 3467999999999999999751 01346899999999999999999998 33 22 23445555
Q ss_pred CCCC
Q 041567 222 YHYD 225 (467)
Q Consensus 222 ~~~~ 225 (467)
....
T Consensus 112 ~~~~ 115 (516)
T 1sxj_A 112 DVRS 115 (516)
T ss_dssp SCCC
T ss_pred Ccch
Confidence 4443
No 40
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.58 E-value=0.00014 Score=68.34 Aligned_cols=47 Identities=19% Similarity=0.161 Sum_probs=36.0
Q ss_pred CCccccchhHHHHHHH-------HHhcC-CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 158 NRNTVGLDDRMEELLD-------LLIEG-PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~-------~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...++|.....+++.. .+... ......+.|+|++|+|||+||+.+++
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3568888887777666 33222 34567889999999999999999998
No 41
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.58 E-value=0.0001 Score=72.49 Aligned_cols=48 Identities=8% Similarity=0.066 Sum_probs=38.7
Q ss_pred CCCccccchhHHHHHHHHHhc----------CCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 157 KNRNTVGLDDRMEELLDLLIE----------GPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.-.+++|.+..++.|.+.+.. .....+.+.|+|++|+|||+||+.+++
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999887742 112356788999999999999999988
No 42
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.54 E-value=0.0004 Score=66.46 Aligned_cols=48 Identities=23% Similarity=0.177 Sum_probs=38.3
Q ss_pred CCCccccchhHHHHHHHHHhcC-----------CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 157 KNRNTVGLDDRMEELLDLLIEG-----------PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.-.+++|.+..+++|.+.+... -.....+.|+|++|+|||+||+.+++
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH
Confidence 3456899999998888876531 12356789999999999999999998
No 43
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.54 E-value=0.00025 Score=70.46 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=39.1
Q ss_pred CCCCccccchhHHHHHHHHHhcC----------CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 156 SKNRNTVGLDDRMEELLDLLIEG----------PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..-.+++|.+..++.|.+.+... ....+-+.|+|.+|+|||+||+.+++
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 44467999999999999887321 12246788999999999999999987
No 44
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.48 E-value=0.00023 Score=68.74 Aligned_cols=113 Identities=16% Similarity=0.073 Sum_probs=60.2
Q ss_pred HHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHhhCCCCccccC
Q 041567 168 MEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMFLLPFSMLSKI 246 (467)
Q Consensus 168 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l~~~~~~~~~~ 246 (467)
...+...+.........+.|+|++|+||||||+.+++. ....-...++++. ..+. .+...+...
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~------~~~~~~~~~~~~~~------- 87 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSA------DDFAQAMVEHLKKG------- 87 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEH------HHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEH------HHHHHHHHHHHHcC-------
Confidence 34445555444334567889999999999999999983 3211112345543 3344 444444321
Q ss_pred CCCCHHHHHHHHHHhhCCceEEEEEecCCCcc----hHHHHHHhhcC-CCCCcEEEEecCccc
Q 041567 247 KDKDYEMKKINLGEYLMTKWYLIVLDDVWSTN----VLDVVREILLD-NQNGSRVLITLTRIK 304 (467)
Q Consensus 247 ~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~----~~~~l~~~l~~-~~~gs~iivT~TR~~ 304 (467)
..... ...+. +..+|++||+.... ..+.+...+.. ...|..||+| |.+.
T Consensus 88 ---~~~~~----~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~-~~~~ 141 (324)
T 1l8q_A 88 ---TINEF----RNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILA-SDRH 141 (324)
T ss_dssp ---CHHHH----HHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEE-ESSC
T ss_pred ---cHHHH----HHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEE-ecCC
Confidence 11111 22222 36799999996432 22333333321 1235678888 6543
No 45
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.45 E-value=0.00033 Score=68.74 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=37.6
Q ss_pred CCCccccchhHHHHHHHHHhcC----------CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 157 KNRNTVGLDDRMEELLDLLIEG----------PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.-.+++|.+..++.|.+.+... ....+-|.|+|++|+|||+||+.+++
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 3456899999999998877311 12234588999999999999999998
No 46
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.44 E-value=0.0005 Score=69.52 Aligned_cols=46 Identities=15% Similarity=0.191 Sum_probs=38.5
Q ss_pred CCCccccchhHH---HHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 157 KNRNTVGLDDRM---EELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 157 ~~~~~vGr~~~~---~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.-.+++|.+..+ ..|...+..+. ...+.|+|++|+||||||+.+.+
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CHHHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHH
Confidence 345689998888 67777777654 46789999999999999999998
No 47
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.43 E-value=0.00029 Score=67.05 Aligned_cols=49 Identities=14% Similarity=0.140 Sum_probs=38.9
Q ss_pred CCCCccccchhHHHHHHHHHhcC----------CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 156 SKNRNTVGLDDRMEELLDLLIEG----------PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..-.+++|.+..++.+.+.+... ......+.|+|++|+||||||+.+++
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 33457999999999998877431 12346788999999999999999998
No 48
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.43 E-value=0.00029 Score=65.97 Aligned_cols=47 Identities=17% Similarity=0.127 Sum_probs=34.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 159 RNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.+++|.+..+.++.+.+..-......+.|+|.+|+|||+||+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 45899999999888777542222345779999999999999999984
No 49
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.42 E-value=0.0011 Score=59.65 Aligned_cols=91 Identities=10% Similarity=0.070 Sum_probs=56.0
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCC-------CccccCCCCCHHH
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPF-------SMLSKIKDKDYEM 253 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~-------~~~~~~~~~~~~~ 253 (467)
...++.|+|.+|+|||||+..+.. ..-..++|++....++...+..+...++... .........+...
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 456999999999999999999987 1124678888877666655445444432210 0000001112234
Q ss_pred HHHHHHHhhCCceEEEEEecCCC
Q 041567 254 KKINLGEYLMTKWYLIVLDDVWS 276 (467)
Q Consensus 254 ~~~~l~~~L~~kr~LlVlDdv~~ 276 (467)
....++..+..+.-+||+|.+..
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcHH
Confidence 55556666655577999999853
No 50
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.0017 Score=65.09 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=39.5
Q ss_pred CccccchhHHHHHHHHHhc-----------CCCCcEEEEEECCCCChHHHHHHHHhcCccccCcc
Q 041567 159 RNTVGLDDRMEELLDLLIE-----------GPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYF 212 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 212 (467)
.++.|.++.+++|.+.+.- +-...+=|.++|++|.|||+||+.+++ +....|
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~~ 243 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGANF 243 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCE
Confidence 4678899998888876642 123457788999999999999999999 444443
No 51
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.38 E-value=0.00043 Score=64.40 Aligned_cols=48 Identities=21% Similarity=0.216 Sum_probs=35.2
Q ss_pred CCCccccchhHHHHHHHHHh---cC-------CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 157 KNRNTVGLDDRMEELLDLLI---EG-------PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.-.+++|.+..++++.+.+. .. ....+-+.|+|++|+||||||+.+.+
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 34578999988887766542 21 01234588999999999999999998
No 52
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.38 E-value=0.00058 Score=66.45 Aligned_cols=44 Identities=16% Similarity=0.214 Sum_probs=36.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 159 RNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+++|.+..++.|...+..+. .+.+.++|++|+||||+|+.+.+
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 457898888888888887653 33388999999999999999987
No 53
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.36 E-value=0.00043 Score=70.09 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=38.7
Q ss_pred CCCCccccchhHHHHHHHHHhc----------CCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 156 SKNRNTVGLDDRMEELLDLLIE----------GPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..-.+++|.+..++.|.+.+.. .....+-|.++|++|+|||+||+.+++
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3446789999999999887631 012346788999999999999999998
No 54
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.36 E-value=0.0011 Score=67.50 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=35.2
Q ss_pred CCCccccchhHHHHHHHHHh---cC-------CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 157 KNRNTVGLDDRMEELLDLLI---EG-------PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.-.+++|.++.++++.+.+. .. ....+-|.|+|++|.|||+||+.+++
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 34568999988777766543 21 11123478999999999999999998
No 55
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.35 E-value=0.0054 Score=59.41 Aligned_cols=39 Identities=15% Similarity=0.140 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 165 DDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 165 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
++..+.+.+.+..+. -...+.++|+.|+|||++|+.+.+
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~ 46 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSR 46 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHH
Confidence 455666777666543 345788999999999999999876
No 56
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.34 E-value=0.00052 Score=65.63 Aligned_cols=61 Identities=15% Similarity=0.195 Sum_probs=42.9
Q ss_pred ccccchhHHHHHHHHHhcC-------CCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCC
Q 041567 160 NTVGLDDRMEELLDLLIEG-------PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPY 222 (467)
Q Consensus 160 ~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~ 222 (467)
.++|.+..++.+...+... ......+.++|.+|+|||++|+.+.+ .....-...+.++.+.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~--~~~~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA--TLFDTEEAMIRIDMTE 85 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH--HHHSCGGGEEEEEGGG
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH--HHcCCCcceEEeeccc
Confidence 4789999988888877642 12246899999999999999999988 3322222244555543
No 57
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.0015 Score=64.63 Aligned_cols=52 Identities=19% Similarity=0.220 Sum_probs=39.5
Q ss_pred CccccchhHHHHHHHHHhc-----------CCCCcEEEEEECCCCChHHHHHHHHhcCccccCcc
Q 041567 159 RNTVGLDDRMEELLDLLIE-----------GPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYF 212 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 212 (467)
.++.|.++.+++|.+.+.- +-...+=|.++|++|.|||.||+.+++ +....|
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f 210 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF 210 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc
Confidence 5678999999888876532 123356688999999999999999999 454444
No 58
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.29 E-value=0.0016 Score=62.32 Aligned_cols=117 Identities=11% Similarity=0.020 Sum_probs=69.0
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCc-cccCccceEEEEEcCC-CCCHHHHHHHHHHhhCCC
Q 041567 163 GLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSS-YVKHYFDHLAWIPAPY-HYDAYQILDIVTMFLLPF 240 (467)
Q Consensus 163 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~-~~~~~F~~~~wv~v~~-~~~~~~~~~il~~l~~~~ 240 (467)
|-++.++.|.+.+..+. .+.+.++|++|+||||+|..+.+.- ......+...+++.++ ....+.+-++...+....
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhcc
Confidence 34556677777776654 6789999999999999999998621 1111223345554432 222222223322222110
Q ss_pred CccccCCCCCHHHHHHHHHHhhCCceEEEEEecCCCc--chHHHHHHhhcCCCCCcEEEEecCcc
Q 041567 241 SMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVWST--NVLDVVREILLDNQNGSRVLITLTRI 303 (467)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivT~TR~ 303 (467)
..+++-++|+|++..- ...+.++..+-...+.+.+|++ |.+
T Consensus 79 ---------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~-t~~ 121 (305)
T 2gno_A 79 ---------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLN-TRR 121 (305)
T ss_dssp ---------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEE-ESC
T ss_pred ---------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEE-ECC
Confidence 1245678899999643 5667777777766667777776 644
No 59
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.0027 Score=63.65 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=39.7
Q ss_pred CccccchhHHHHHHHHHhc-----------CCCCcEEEEEECCCCChHHHHHHHHhcCccccCcc
Q 041567 159 RNTVGLDDRMEELLDLLIE-----------GPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYF 212 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 212 (467)
.++.|.++.+++|.+.+.- +-...+=|.++|++|.|||.||+.+++ +....|
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f 271 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF 271 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe
Confidence 4688999999988876432 113467788999999999999999999 454444
No 60
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.22 E-value=0.00015 Score=67.95 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=36.0
Q ss_pred CCCccccchhHHHHHHHHHhc----------CCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 157 KNRNTVGLDDRMEELLDLLIE----------GPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.-.+++|.+..++.+.+.+.. +....+-+.|+|++|+|||+||+.+++
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 345799999888888876541 111123377999999999999999998
No 61
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.21 E-value=0.00059 Score=69.76 Aligned_cols=46 Identities=11% Similarity=0.138 Sum_probs=37.5
Q ss_pred CccccchhHHHHHHHHHhcC-----------CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 159 RNTVGLDDRMEELLDLLIEG-----------PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+++|.+..+++|.+++... .....-+.|+|.+|+|||+||+.+.+
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH
Confidence 46899999999998877532 22345688999999999999999988
No 62
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.19 E-value=0.00042 Score=76.10 Aligned_cols=45 Identities=16% Similarity=0.310 Sum_probs=38.3
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-..++||++++..+.+.|.... ..-+.++|.+|+|||+||+.+++
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHH
T ss_pred CcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence 3568999999999999997653 34467999999999999999987
No 63
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.16 E-value=0.00066 Score=69.18 Aligned_cols=44 Identities=14% Similarity=0.277 Sum_probs=37.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 159 RNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..++||+.+++.+...|.... ..-+.++|.+|+|||+||+.+++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 469999999999999997643 34557999999999999999987
No 64
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.15 E-value=0.0014 Score=62.75 Aligned_cols=47 Identities=17% Similarity=0.155 Sum_probs=37.4
Q ss_pred CccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 159 RNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..++|+...+.++.+.+..-......|.|+|.+|+|||++|+.+.+.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 46899999999998887653223445779999999999999999873
No 65
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.14 E-value=0.00091 Score=56.83 Aligned_cols=25 Identities=8% Similarity=0.048 Sum_probs=22.1
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
....+.|+|..|+|||||++.+++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999983
No 66
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.0033 Score=62.48 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=39.3
Q ss_pred CccccchhHHHHHHHHHhc----C-------CCCcEEEEEECCCCChHHHHHHHHhcCccccCcc
Q 041567 159 RNTVGLDDRMEELLDLLIE----G-------PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYF 212 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 212 (467)
.++.|.++.+++|.+.+.- . -...+=|.++|++|.|||.||+.+++ +....|
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f 244 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN--QTSATF 244 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH--HHTCEE
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH--HhCCCE
Confidence 4577899998888876532 1 13456788999999999999999999 444443
No 67
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.06 E-value=0.00079 Score=64.12 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=21.7
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
....+.++|++|+|||+||+.+++
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999999999998
No 68
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.0014 Score=65.63 Aligned_cols=53 Identities=23% Similarity=0.224 Sum_probs=40.2
Q ss_pred CCccccchhHHHHHHHHHhc-----------CCCCcEEEEEECCCCChHHHHHHHHhcCccccCcc
Q 041567 158 NRNTVGLDDRMEELLDLLIE-----------GPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYF 212 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 212 (467)
-.++.|.++.+++|.+.+.. +-...+=|.++|++|.|||+||+.+++ ....+|
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~--~~~~~~ 234 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN--STKAAF 234 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH--HHTCEE
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCCe
Confidence 35688999999988876642 123456688999999999999999998 444443
No 69
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.01 E-value=0.00036 Score=67.01 Aligned_cols=54 Identities=11% Similarity=0.163 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHhcCCC-CcEEEEEECCCCChHHHHHHHHhcCcccc-CccceEEEEEc
Q 041567 165 DDRMEELLDLLIEGPN-QLSVVAILNSIGLDKTAFTAEAYNSSYVK-HYFDHLAWIPA 220 (467)
Q Consensus 165 ~~~~~~l~~~L~~~~~-~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~v 220 (467)
...++.+.+++..... ....+.|+|.+|+|||+||..+++. .. ..-..+.++++
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~--~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHE--LSEKKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHH--HHHHSCCCEEEEEH
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEH
Confidence 3344455566654322 2467889999999999999999983 33 22223445543
No 70
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.92 E-value=0.0068 Score=61.93 Aligned_cols=49 Identities=16% Similarity=0.239 Sum_probs=35.7
Q ss_pred CCCCccccchhHHHHHHHHHh---cCC-------CCcEEEEEECCCCChHHHHHHHHhc
Q 041567 156 SKNRNTVGLDDRMEELLDLLI---EGP-------NQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..-.+++|.++.+.++.+... ... .-.+-+.|+|++|+||||||+.+++
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 445679999988777766543 210 1122388999999999999999998
No 71
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.85 E-value=0.0055 Score=66.26 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=38.3
Q ss_pred CCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 158 NRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-..++||+.+++.+.+.|.... ..-+.++|.+|+|||++|+.+.+
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHH
Confidence 3568999999999999987653 34567999999999999999987
No 72
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.0016 Score=65.23 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=40.0
Q ss_pred CCccccchhHHHHHHHHHhc----C-------CCCcEEEEEECCCCChHHHHHHHHhcCccccCcc
Q 041567 158 NRNTVGLDDRMEELLDLLIE----G-------PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYF 212 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 212 (467)
=.++.|.++.+++|.+.+.. . -...+=|.++|++|.|||.||+.+++ +....|
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~~f 243 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QTNATF 243 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCCCE
Confidence 35688999999988876432 1 23466788999999999999999999 444443
No 73
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.82 E-value=0.00092 Score=63.94 Aligned_cols=69 Identities=10% Similarity=0.081 Sum_probs=45.7
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEc--CCCCCHHHHHHHHHHhhCCCCccccCCCCCHHHHHHHHH
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPA--PYHYDAYQILDIVTMFLLPFSMLSKIKDKDYEMKKINLG 259 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v--~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~ 259 (467)
.+++.|+|++|+|||+||.++... .-..++|+++ .+..+ ....+.+.....+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~--------------------~~~~~le~~l~~i~ 177 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLS--------------------GYNTDFNVFVDDIA 177 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSST--------------------TCBCCHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhh--------------------hhhcCHHHHHHHHH
Confidence 467789999999999999999873 1112456665 22211 01134566666667
Q ss_pred HhhCCceEEEEEecCCC
Q 041567 260 EYLMTKWYLIVLDDVWS 276 (467)
Q Consensus 260 ~~L~~kr~LlVlDdv~~ 276 (467)
+.+...+ +||+|++..
T Consensus 178 ~~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 178 RAMLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHHHCS-EEEEECCTT
T ss_pred HHHhhCC-EEEEecccc
Confidence 7666556 999999964
No 74
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.82 E-value=0.0076 Score=58.62 Aligned_cols=105 Identities=10% Similarity=0.132 Sum_probs=62.2
Q ss_pred HHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccC----ccceEEEEEcCCCCCHHHHHHHHHHhhCCCC-----
Q 041567 171 LLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKH----YFDHLAWIPAPYHYDAYQILDIVTMFLLPFS----- 241 (467)
Q Consensus 171 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~----- 241 (467)
|-.+|..+=....++.|+|.+|+||||||..++....... .-..++|++....++...+..++..++....
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~ 190 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDN 190 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHT
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhc
Confidence 3333433323567999999999999999999886322211 1246889999888887776665665543210
Q ss_pred c--cccCCCCCHHHHHHHHHHhhC---CceEEEEEecCC
Q 041567 242 M--LSKIKDKDYEMKKINLGEYLM---TKWYLIVLDDVW 275 (467)
Q Consensus 242 ~--~~~~~~~~~~~~~~~l~~~L~---~kr~LlVlDdv~ 275 (467)
. ..........++...+...+. .+.-+||+|.+.
T Consensus 191 l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~ 229 (343)
T 1v5w_A 191 VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIM 229 (343)
T ss_dssp EEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSG
T ss_pred eeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechH
Confidence 0 000011122233444444443 456799999884
No 75
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.79 E-value=0.0032 Score=57.58 Aligned_cols=96 Identities=9% Similarity=0.105 Sum_probs=56.4
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccC----ccceEEEEEcCCCCCHHHHHHHHHHhhCCCC----ccccCCCCCHH
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKH----YFDHLAWIPAPYHYDAYQILDIVTMFLLPFS----MLSKIKDKDYE 252 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~----~~~~~~~~~~~ 252 (467)
.-.++.|+|.+|+|||||+..+........ .-..++|++....++...+..++..++.... ...-....+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 356999999999999999999887311111 1346889988776665555455555543210 00000112223
Q ss_pred H---HHHHHHHhhC-CceEEEEEecCCC
Q 041567 253 M---KKINLGEYLM-TKWYLIVLDDVWS 276 (467)
Q Consensus 253 ~---~~~~l~~~L~-~kr~LlVlDdv~~ 276 (467)
+ ....+.+.+. .+.-+||+|.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 2 2333545543 4678999999853
No 76
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.78 E-value=0.0023 Score=64.89 Aligned_cols=47 Identities=19% Similarity=0.111 Sum_probs=36.4
Q ss_pred CCccccchhHHHHHHH---HHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 158 NRNTVGLDDRMEELLD---LLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~---~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+++|.++.++.+.. .+..+....+-+.++|++|+|||+||+.+.+
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~ 85 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQ 85 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHH
Confidence 3679999998876554 4444433345688999999999999999998
No 77
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.78 E-value=0.009 Score=58.24 Aligned_cols=101 Identities=18% Similarity=0.038 Sum_probs=60.0
Q ss_pred HHHHHHHh-cCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCccccCC
Q 041567 169 EELLDLLI-EGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLSKIK 247 (467)
Q Consensus 169 ~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~~~~ 247 (467)
..|-..|- .+=..-.++.|+|.+|+|||||+..+... ....=..++|++....++.. .++.++.......-..
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~----ra~rlgv~~~~l~i~~ 120 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV----YAKNLGVDLKSLLISQ 120 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH----HHHHHTCCGGGCEEEC
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH----HHHHcCCchhhhhhhh
Confidence 34444443 23234679999999999999999999873 22222347788887766654 2233332211000112
Q ss_pred CCCHHHHHHHHHHhhC-CceEEEEEecCC
Q 041567 248 DKDYEMKKINLGEYLM-TKWYLIVLDDVW 275 (467)
Q Consensus 248 ~~~~~~~~~~l~~~L~-~kr~LlVlDdv~ 275 (467)
..+.++....+...++ .+.-++|+|.+-
T Consensus 121 ~~~~e~~l~~~~~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 121 PDHGEQALEIVDELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp CSSHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred ccCHHHHHHHHHHHhhhcCCCeEEehHhh
Confidence 3455666666666554 456689999874
No 78
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.76 E-value=0.0021 Score=69.57 Aligned_cols=44 Identities=14% Similarity=0.277 Sum_probs=37.9
Q ss_pred CccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 159 RNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..++||+.+++.+...|.... ..-+.++|.+|+|||++|+.+.+
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 469999999999999997643 33467999999999999999987
No 79
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.69 E-value=0.0034 Score=60.56 Aligned_cols=95 Identities=15% Similarity=0.127 Sum_probs=58.8
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCc----cceEEEEEcCCCCCHHHHHHHHHHhhCCCCc----cccCCCCCHH
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHY----FDHLAWIPAPYHYDAYQILDIVTMFLLPFSM----LSKIKDKDYE 252 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~ 252 (467)
...++.|+|.+|+||||||..+......... -..++|++....++..++..++..++..... ..-....+.+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 3569999999999999999998863211111 2468999998888877766556665432100 0000112222
Q ss_pred ---HHHHHHHHhhC--CceEEEEEecCC
Q 041567 253 ---MKKINLGEYLM--TKWYLIVLDDVW 275 (467)
Q Consensus 253 ---~~~~~l~~~L~--~kr~LlVlDdv~ 275 (467)
++...+...+. .+.-+||+|.+.
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 34445555553 456799999884
No 80
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.66 E-value=0.0016 Score=59.21 Aligned_cols=112 Identities=13% Similarity=-0.012 Sum_probs=63.7
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHhhCCCCccccCCCCCHHHHHHHHH
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMFLLPFSMLSKIKDKDYEMKKINLG 259 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l~~~~~~~~~~~~~~~~~~~~~l~ 259 (467)
...++.|+|..|+||||++..+.+ +...+-..++.+....+ .. .. .++..++.... ........++.+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~d--~r-~~~~i~srlG~~~~---~~~~~~~~~i~~~i~ 82 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFKPKID--TR-SIRNIQSRTGTSLP---SVEVESAPEILNYIM 82 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEEECCC--GG-GCSSCCCCCCCSSC---CEEESSTHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEEeccC--ch-HHHHHHHhcCCCcc---ccccCCHHHHHHHHH
Confidence 357899999999999999988877 33333223344433222 22 22 44444443221 111233456666666
Q ss_pred HhhCCceE-EEEEecCCC--cchHHHHHHhhcCCCCCcEEEEecCccc
Q 041567 260 EYLMTKWY-LIVLDDVWS--TNVLDVVREILLDNQNGSRVLITLTRIK 304 (467)
Q Consensus 260 ~~L~~kr~-LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iivT~TR~~ 304 (467)
+.+.+.++ +||+|.+.. .+.++.+.. +.+ .|-.||+| -+..
T Consensus 83 ~~~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~-Gl~~ 126 (223)
T 2b8t_A 83 SNSFNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIIS-GLDK 126 (223)
T ss_dssp STTSCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEE-CCSB
T ss_pred HHhhCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEE-eccc
Confidence 66655444 999998853 244444433 222 27789999 5543
No 81
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.66 E-value=0.0059 Score=55.24 Aligned_cols=118 Identities=14% Similarity=0.040 Sum_probs=61.7
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCccc-----------------
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLS----------------- 244 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~----------------- 244 (467)
-.+++|+|.+|+|||||++.+... ....=..++|++... ....+...+..++.......
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~--~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAK--GLRDGDPCIYVTTEE--SRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHH--HHHHTCCEEEEESSS--CHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH--HHHCCCeEEEEEccc--CHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCce
Confidence 468999999999999999999853 221112456666543 34444422333332111000
Q ss_pred -cCCCCCHHHHHHHHHHhhCC-c--eEEEEEecCC-----CcchHHHHHHhhcC--CCCCcEEEEecCccc
Q 041567 245 -KIKDKDYEMKKINLGEYLMT-K--WYLIVLDDVW-----STNVLDVVREILLD--NQNGSRVLITLTRIK 304 (467)
Q Consensus 245 -~~~~~~~~~~~~~l~~~L~~-k--r~LlVlDdv~-----~~~~~~~l~~~l~~--~~~gs~iivT~TR~~ 304 (467)
.....+..++...+...+.. + ..+||+|... +......+...+.. ...|..||+| |...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~-~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYAT-SQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEE-EC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEE-eccC
Confidence 00112455665555555432 3 3499999985 22233333333321 1246778877 5543
No 82
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.65 E-value=0.0041 Score=67.27 Aligned_cols=46 Identities=13% Similarity=0.254 Sum_probs=37.5
Q ss_pred CccccchhHHHHHHHHHhcC-------CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 159 RNTVGLDDRMEELLDLLIEG-------PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..++|.+..++.+...+... ......+.++|++|+|||++|+.+.+
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~ 543 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 543 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999888887632 12334799999999999999999988
No 83
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.63 E-value=0.005 Score=57.87 Aligned_cols=46 Identities=22% Similarity=0.182 Sum_probs=32.6
Q ss_pred CCccccchhHHHHHHHHHhcC------------CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 158 NRNTVGLDDRMEELLDLLIEG------------PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.++.|.++.+++|.+.+... ..... +.++|++|.||||||+.++.
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHH
Confidence 346788888888877654210 11123 89999999999999999998
No 84
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.57 E-value=0.0025 Score=68.62 Aligned_cols=93 Identities=13% Similarity=0.167 Sum_probs=58.0
Q ss_pred CccccchhHHHHHHHHHh----cC-------CCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHH
Q 041567 159 RNTVGLDDRMEELLDLLI----EG-------PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAY 227 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~----~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 227 (467)
.++.|.++.+++|.+.+. .. -...+-|.++|++|.|||+||+.+++ +...+| +.|+.+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~--elg~~~---~~v~~~------ 272 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLINGP------ 272 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHT--TTTCEE---EEEEHH------
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCeE---EEEEhH------
Confidence 457888988888877653 21 13456789999999999999999999 444443 344322
Q ss_pred HHHHHHHHhhCCCCccccCCCCCHHHHHHHHHHhhCCceEEEEEecCC
Q 041567 228 QILDIVTMFLLPFSMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVW 275 (467)
Q Consensus 228 ~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~ 275 (467)
+++ .. ........+...+.......+++|++|++.
T Consensus 273 ---~l~----sk------~~gese~~lr~lF~~A~~~~PsIIfIDEiD 307 (806)
T 3cf2_A 273 ---EIM----SK------LAGESESNLRKAFEEAEKNAPAIIFIDELD 307 (806)
T ss_dssp ---HHH----SS------CTTHHHHHHHHHHHHHTTSCSEEEEEESGG
T ss_pred ---Hhh----cc------cchHHHHHHHHHHHHHHHcCCeEEEEehhc
Confidence 111 10 011122333333444445678999999985
No 85
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.55 E-value=0.0043 Score=59.70 Aligned_cols=95 Identities=11% Similarity=0.083 Sum_probs=59.1
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccC---------cc-----ceEEEEEcCCCCCHHHHHHHHHHhhCCCCc----
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKH---------YF-----DHLAWIPAPYHYDAYQILDIVTMFLLPFSM---- 242 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------~F-----~~~~wv~v~~~~~~~~~~~il~~l~~~~~~---- 242 (467)
...++.|+|.+|+|||+||..++....... .. ..++|++....++..++..++..++.....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDN 176 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhcC
Confidence 467999999999999999998876321111 11 468899998888877777556665432100
Q ss_pred cccCCCCCHH---HHHHHHHHhhC--CceEEEEEecCC
Q 041567 243 LSKIKDKDYE---MKKINLGEYLM--TKWYLIVLDDVW 275 (467)
Q Consensus 243 ~~~~~~~~~~---~~~~~l~~~L~--~kr~LlVlDdv~ 275 (467)
..-....+.+ ++...+...+. .+.-+||+|.+.
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 0000112223 34445555554 356699999984
No 86
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.49 E-value=0.0017 Score=70.64 Aligned_cols=46 Identities=13% Similarity=0.201 Sum_probs=37.5
Q ss_pred CccccchhHHHHHHHHHhc-----------CCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 159 RNTVGLDDRMEELLDLLIE-----------GPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+++|.+..+++|.+++.. .-.....|.|+|.+|+||||||+.+.+
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 4689999999998887753 112355789999999999999999998
No 87
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.42 E-value=0.019 Score=55.96 Aligned_cols=89 Identities=17% Similarity=0.027 Sum_probs=54.4
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCccccCCCCCHHHHHHHHHH
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLSKIKDKDYEMKKINLGE 260 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~ 260 (467)
.-.++.|+|.+|+||||||..+... ....=..++|++....++.. .+..++.......-....+.++....+..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4578999999999999999998863 22222357899888766543 12333321110000122345666666665
Q ss_pred hhC-CceEEEEEecCC
Q 041567 261 YLM-TKWYLIVLDDVW 275 (467)
Q Consensus 261 ~L~-~kr~LlVlDdv~ 275 (467)
... .+.-+||+|.+-
T Consensus 134 l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHTTTCCSEEEEECGG
T ss_pred HHhcCCCCEEEEcChH
Confidence 554 356799999884
No 88
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.39 E-value=0.0047 Score=54.69 Aligned_cols=114 Identities=13% Similarity=0.023 Sum_probs=61.8
Q ss_pred EEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCC---CCHHHHHHHHHHhhC-----CCCccccCCC------
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYH---YDAYQILDIVTMFLL-----PFSMLSKIKD------ 248 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~---~~~~~~~~il~~l~~-----~~~~~~~~~~------ 248 (467)
..|-|++-.|.||||+|-.+.- +.-.+=-.+.++...+. .....++ ..+.. .... ....
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l---~~L~v~~~~~g~gf--~~~~~~~~~~ 101 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLL---EPHGVEFQVMATGF--TWETQNREAD 101 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHH---GGGTCEEEECCTTC--CCCGGGHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHH---HhCCcEEEEccccc--ccCCCCcHHH
Confidence 4555666677999999877765 32222223445544332 2333344 33310 0000 0011
Q ss_pred -CCHHHHHHHHHHhhCCceE-EEEEecCCC-----cchHHHHHHhhcCCCCCcEEEEecCccc
Q 041567 249 -KDYEMKKINLGEYLMTKWY-LIVLDDVWS-----TNVLDVVREILLDNQNGSRVLITLTRIK 304 (467)
Q Consensus 249 -~~~~~~~~~l~~~L~~kr~-LlVlDdv~~-----~~~~~~l~~~l~~~~~gs~iivT~TR~~ 304 (467)
..........++.+.+.+| |||||++-. .-..+.+...+........||+| +|..
T Consensus 102 ~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlT-Gr~a 163 (196)
T 1g5t_A 102 TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIIT-GRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEE-CSSC
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEE-CCCC
Confidence 1112334555666655444 999999832 23445666666666667889999 8876
No 89
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.39 E-value=0.0026 Score=57.07 Aligned_cols=38 Identities=16% Similarity=0.132 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 167 RMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 167 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..++|.+.+........+|+|+|..|+|||||++.+..
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44555555544334578999999999999999999887
No 90
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.35 E-value=0.016 Score=55.20 Aligned_cols=87 Identities=6% Similarity=-0.030 Sum_probs=53.8
Q ss_pred EEEEECCCCChHHHHHHHHhcCccccCc--cceEEEEEcCCCCCHHHHHHHHHHhhCCCCccccCCCCCHHHH-HHHHHH
Q 041567 184 VVAILNSIGLDKTAFTAEAYNSSYVKHY--FDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLSKIKDKDYEMK-KINLGE 260 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~-~~~l~~ 260 (467)
++-|.|.+|+|||||+.++... .... =..++||+....++... +++++...+..--....+.++. ...+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~r----a~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPAY----LRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHHH----HHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHHH----HHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 7899999999999999888763 3332 24688999888776542 4444442211001122345555 333333
Q ss_pred h--h-CCceEEEEEecCCC
Q 041567 261 Y--L-MTKWYLIVLDDVWS 276 (467)
Q Consensus 261 ~--L-~~kr~LlVlDdv~~ 276 (467)
. + .++.-|||+|-+-.
T Consensus 104 l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHTCCTTCCEEEEEECSTT
T ss_pred HHHhhccCceEEEEecccc
Confidence 2 3 35778999999853
No 91
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.32 E-value=0.0064 Score=63.04 Aligned_cols=46 Identities=17% Similarity=0.282 Sum_probs=35.4
Q ss_pred CccccchhHHHHHHHHHhc----CCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 159 RNTVGLDDRMEELLDLLIE----GPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+++|.++..+.+.+.+.- .......+.++|++|+||||||+.+..
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4578888887777655431 122456899999999999999999988
No 92
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.31 E-value=0.0021 Score=62.27 Aligned_cols=46 Identities=20% Similarity=0.185 Sum_probs=36.4
Q ss_pred CccccchhHHHHHHHHHhcC---CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 159 RNTVGLDDRMEELLDLLIEG---PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..++|.+..++.+...+... +.....+.++|++|+||||||+.+++
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 45789888877777666542 23356789999999999999999998
No 93
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.28 E-value=0.0043 Score=55.33 Aligned_cols=41 Identities=20% Similarity=0.155 Sum_probs=33.3
Q ss_pred chhHHHHHHHHHhcC-CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 164 LDDRMEELLDLLIEG-PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 164 r~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
|++.++.|.+.+... .....+|+|.|..|+|||||++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 556777888877753 23568999999999999999999876
No 94
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.26 E-value=0.0022 Score=61.00 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=37.1
Q ss_pred CccccchhHHHHHHHHHhcC------------CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 159 RNTVGLDDRMEELLDLLIEG------------PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..++|.+..++.+...+... ......+.++|.+|+|||++|+.+.+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 45899999999998877641 12245677999999999999999988
No 95
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.22 E-value=0.012 Score=64.41 Aligned_cols=45 Identities=18% Similarity=0.312 Sum_probs=36.4
Q ss_pred ccccchhHHHHHHHHHhcC-------CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 160 NTVGLDDRMEELLDLLIEG-------PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 160 ~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.++|.+..++.+...+... +.....+.|+|++|+|||++|+.+.+
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 5799999888888877532 12346889999999999999999987
No 96
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.11 E-value=0.018 Score=51.97 Aligned_cols=57 Identities=12% Similarity=0.163 Sum_probs=37.2
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcccc----CccceEEEEEcCCCCCHHHHHHHHHHhh
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVK----HYFDHLAWIPAPYHYDAYQILDIVTMFL 237 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~~~~il~~l~ 237 (467)
.-.+++|+|.+|+|||||++.+....... ..-...+|+.-...+....+..+.+..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~ 84 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRG 84 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcC
Confidence 35799999999999999999997521111 1234578887665555444435555443
No 97
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.11 E-value=0.015 Score=56.95 Aligned_cols=89 Identities=13% Similarity=0.027 Sum_probs=55.2
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCccccCCCCCHHHHHHHHHH
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLSKIKDKDYEMKKINLGE 260 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~ 260 (467)
...++.|.|.+|+||||||..+... ....=..++|++....++.. . +..++.......-....+.++....+..
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~--~--a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV--Y--ARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH--H--HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH--H--HHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 3568899999999999999988763 22222368899988766543 1 2233321110000122355666777766
Q ss_pred hhCC-ceEEEEEecCC
Q 041567 261 YLMT-KWYLIVLDDVW 275 (467)
Q Consensus 261 ~L~~-kr~LlVlDdv~ 275 (467)
..+. +.-+||+|.+-
T Consensus 147 l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHTTTCCSEEEEECTT
T ss_pred HHhcCCCCEEEEeChH
Confidence 6654 45699999984
No 98
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.04 E-value=0.015 Score=56.54 Aligned_cols=97 Identities=11% Similarity=0.117 Sum_probs=55.8
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCcc----ceEEEEEcCCCCCHHHHHHHHHHhhCCCC-------ccccCCCC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYF----DHLAWIPAPYHYDAYQILDIVTMFLLPFS-------MLSKIKDK 249 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F----~~~~wv~v~~~~~~~~~~~il~~l~~~~~-------~~~~~~~~ 249 (467)
.-.++.|+|.+|+|||||+..+.......... ..++|++....+....+..+.+..+.... ........
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~~~~ 209 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSN 209 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECCSHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecCChH
Confidence 46899999999999999999998732111111 23589987766544444355554432110 00000111
Q ss_pred CHHHHHHHHHHhhC------CceEEEEEecCCCc
Q 041567 250 DYEMKKINLGEYLM------TKWYLIVLDDVWST 277 (467)
Q Consensus 250 ~~~~~~~~l~~~L~------~kr~LlVlDdv~~~ 277 (467)
...++...+...+. .+.-+||+|.+-..
T Consensus 210 ~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 210 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 12334444555553 46789999998643
No 99
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.96 E-value=0.016 Score=56.60 Aligned_cols=89 Identities=17% Similarity=0.029 Sum_probs=52.7
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCccccCCCCCHHHHHHHHHH
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLSKIKDKDYEMKKINLGE 260 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~ 260 (467)
...++.|.|.+|+||||||..+... ....=..++|++....++... +..++.......-....+.++....+..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~~----a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY----ARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHHH----HHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 4568999999999999999988863 222223588999877766431 2233321110000112234555555544
Q ss_pred hhC-CceEEEEEecCC
Q 041567 261 YLM-TKWYLIVLDDVW 275 (467)
Q Consensus 261 ~L~-~kr~LlVlDdv~ 275 (467)
..+ .+.-+||+|.+-
T Consensus 136 l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 136 LARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHTCCSEEEEECGG
T ss_pred HHhccCCCEEEEcCHH
Confidence 432 445699999874
No 100
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.87 E-value=0.004 Score=53.51 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=18.8
Q ss_pred EEEEEECCCCChHHHHHHHH
Q 041567 183 SVVAILNSIGLDKTAFTAEA 202 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v 202 (467)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 101
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.82 E-value=0.0094 Score=56.49 Aligned_cols=81 Identities=11% Similarity=0.054 Sum_probs=44.5
Q ss_pred CCCcEEEEEECCCCChHHHHHHHHhcCccccCc---cceEEEEEcCCCCCHHHHH-HHHHHh-----hCCCCccccCCCC
Q 041567 179 PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHY---FDHLAWIPAPYHYDAYQIL-DIVTMF-----LLPFSMLSKIKDK 249 (467)
Q Consensus 179 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~---F~~~~wv~v~~~~~~~~~~-~il~~l-----~~~~~~~~~~~~~ 249 (467)
.....+|+|+|..|+||||||+.+... .... ......|+...-+-..... .+.... ..... .....
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~--l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g---~p~a~ 102 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH--LMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRG---LPGTH 102 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH--HHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSC---STTSB
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH--hhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhcc---Ccchh
Confidence 446789999999999999999988762 2211 2334444554433333444 443221 11001 12344
Q ss_pred CHHHHHHHHHHhhCC
Q 041567 250 DYEMKKINLGEYLMT 264 (467)
Q Consensus 250 ~~~~~~~~l~~~L~~ 264 (467)
+...+.+.+.....+
T Consensus 103 d~~~l~~~l~~l~~g 117 (290)
T 1odf_A 103 DMKLLQEVLNTIFNN 117 (290)
T ss_dssp CHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhhcc
Confidence 556666666665444
No 102
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.81 E-value=0.0068 Score=59.35 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=35.5
Q ss_pred ccccchhHHHHHHHHHhc-------------CCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 160 NTVGLDDRMEELLDLLIE-------------GPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 160 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.++|.+..++.+...+.. .......+.++|++|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 368999988888887731 112345788999999999999999998
No 103
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.80 E-value=0.0045 Score=53.72 Aligned_cols=22 Identities=5% Similarity=0.039 Sum_probs=20.6
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 104
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.75 E-value=0.077 Score=49.33 Aligned_cols=23 Identities=26% Similarity=0.167 Sum_probs=20.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|..|.|||||.+.+..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 105
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.71 E-value=0.016 Score=57.44 Aligned_cols=106 Identities=14% Similarity=0.136 Sum_probs=57.8
Q ss_pred HHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCcccc----CccceEEEEEcCCCCCHHHHHHHHHHhhCCCCc---
Q 041567 170 ELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVK----HYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSM--- 242 (467)
Q Consensus 170 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~--- 242 (467)
.|-.+|..+=..-.++.|+|.+|+|||||+..++-..... ..-..++|++....++...+..+++.++.....
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vle 245 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALN 245 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhh
Confidence 3334443332235799999999999999999765311111 123458899887776665544666665532100
Q ss_pred -cccCCCCCHH---HHHHHHHHhhC-CceEEEEEecCC
Q 041567 243 -LSKIKDKDYE---MKKINLGEYLM-TKWYLIVLDDVW 275 (467)
Q Consensus 243 -~~~~~~~~~~---~~~~~l~~~L~-~kr~LlVlDdv~ 275 (467)
..-....+.. +....+...+. .+.-+||+|.+-
T Consensus 246 ni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 246 NVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp TEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred cEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 0000111222 22233333332 467799999874
No 106
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.71 E-value=0.0059 Score=53.62 Aligned_cols=24 Identities=13% Similarity=0.117 Sum_probs=21.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..+++|+|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 578999999999999999999873
No 107
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.69 E-value=0.0077 Score=58.05 Aligned_cols=63 Identities=17% Similarity=0.122 Sum_probs=44.6
Q ss_pred CccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH
Q 041567 159 RNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL 230 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 230 (467)
..++|+++.++.+...+..+ .-+.++|.+|+|||+||+.+.+ .....| ..+..+......++.
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~--~~~~~~---~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAK--TMDLDF---HRIQFTPDLLPSDLI 89 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHH--HTTCCE---EEEECCTTCCHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHH--HhCCCe---EEEecCCCCChhhcC
Confidence 45899999999998888764 3577999999999999999988 443333 234444444444443
No 108
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.62 E-value=0.0055 Score=52.67 Aligned_cols=22 Identities=9% Similarity=0.031 Sum_probs=20.3
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 109
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.60 E-value=0.0066 Score=52.56 Aligned_cols=22 Identities=14% Similarity=0.289 Sum_probs=20.5
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 110
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.59 E-value=0.013 Score=59.92 Aligned_cols=43 Identities=14% Similarity=0.140 Sum_probs=36.8
Q ss_pred CccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 159 RNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..++|.+..++.+...+..+ .-|.++|++|+|||+||+.+.+.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHH
Confidence 35899999999988888765 36789999999999999999983
No 111
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.57 E-value=0.053 Score=51.88 Aligned_cols=61 Identities=16% Similarity=0.144 Sum_probs=39.9
Q ss_pred HHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHH
Q 041567 170 ELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTM 235 (467)
Q Consensus 170 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~ 235 (467)
.|-+.+ .+=..-.++.|.|.+|+||||||..++.+...+. ..++|++.. .+..++. .++..
T Consensus 57 ~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 57 ELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp HHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred HHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 333434 3323457899999999999999998876422222 567888765 4556666 55544
No 112
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.52 E-value=0.0066 Score=53.91 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=21.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+|.|+|++|+||||+++.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 113
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.48 E-value=0.048 Score=51.93 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=21.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|+|+|.+|+||||++..++.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 467999999999999999998886
No 114
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.40 E-value=0.01 Score=51.26 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=21.7
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|+|+|++|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999876
No 115
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.40 E-value=0.076 Score=53.12 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=21.4
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+..+|.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999888775
No 116
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.38 E-value=0.0062 Score=52.50 Aligned_cols=22 Identities=9% Similarity=0.235 Sum_probs=20.5
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+|+|+|++|+|||||++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 117
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.38 E-value=0.0098 Score=52.83 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=22.1
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|+|+|++|+|||||++.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999987
No 118
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.37 E-value=0.013 Score=53.97 Aligned_cols=40 Identities=15% Similarity=-0.014 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 165 DDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 165 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+.++...+.........|.|.|++|+||||+|+.+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 12 IDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3344445444443333567899999999999999999976
No 119
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.36 E-value=0.043 Score=52.02 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=21.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+++++|.+|+||||++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999998876
No 120
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.33 E-value=0.0087 Score=52.23 Aligned_cols=23 Identities=9% Similarity=0.225 Sum_probs=21.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999986
No 121
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.32 E-value=0.068 Score=53.38 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=21.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|.++|.+|+||||++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999988875
No 122
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.29 E-value=0.011 Score=54.65 Aligned_cols=48 Identities=17% Similarity=0.217 Sum_probs=33.4
Q ss_pred CCCccccchhHHHHHHHHHhc--C-------C-CCcEEEEEECCCCChHHHHHHHHhc
Q 041567 157 KNRNTVGLDDRMEELLDLLIE--G-------P-NQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~--~-------~-~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.-.+++|.+..+.++.+.... . + .-.+-+.|+|++|+|||||++.+++
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 345688988777766554321 1 0 0112288999999999999999998
No 123
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.28 E-value=0.012 Score=57.38 Aligned_cols=104 Identities=15% Similarity=0.100 Sum_probs=58.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEE-EEEcCCCCCHHHHHHHHHHhhCCCCccccCCCCCHHHHHHHHHH
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLA-WIPAPYHYDAYQILDIVTMFLLPFSMLSKIKDKDYEMKKINLGE 260 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-wv~v~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~ 260 (467)
..+++|+|+.|+|||||.+.+.. .+.......+ .+.-.-.+.......++.+.. ...+.......+..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g--~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~---------~~~~~~~~~~~La~ 191 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLD--YLNNTKYHHILTIEDPIEFVHESKKCLVNQRE---------VHRDTLGFSEALRS 191 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH--HHHHHCCCEEEEEESSCCSCCCCSSSEEEEEE---------BTTTBSCHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh--cccCCCCcEEEEccCcHHhhhhccccceeeee---------eccccCCHHHHHHH
Confidence 35999999999999999998876 2222211222 221111110000000000000 00011234457888
Q ss_pred hhCCceEEEEEecCCCcchHHHHHHhhcCCCCCcEEEEe
Q 041567 261 YLMTKWYLIVLDDVWSTNVLDVVREILLDNQNGSRVLIT 299 (467)
Q Consensus 261 ~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivT 299 (467)
.|...+=+|++|...+.+.++.+.... ..|..||+|
T Consensus 192 aL~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t 227 (356)
T 3jvv_A 192 ALREDPDIILVGEMRDLETIRLALTAA---ETGHLVFGT 227 (356)
T ss_dssp HTTSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEE
T ss_pred HhhhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEE
Confidence 888899999999998877766655443 236668888
No 124
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.28 E-value=0.0085 Score=52.31 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=20.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999987
No 125
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.26 E-value=0.018 Score=54.44 Aligned_cols=24 Identities=13% Similarity=0.200 Sum_probs=22.0
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|.|.|++|+||||+|+.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999986
No 126
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.20 E-value=0.011 Score=52.44 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=21.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999986
No 127
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.19 E-value=0.01 Score=52.10 Aligned_cols=23 Identities=9% Similarity=0.122 Sum_probs=21.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999987
No 128
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.18 E-value=0.011 Score=52.59 Aligned_cols=24 Identities=17% Similarity=0.201 Sum_probs=21.8
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|+|+|+.|+|||||++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 129
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.17 E-value=0.02 Score=55.47 Aligned_cols=43 Identities=23% Similarity=0.280 Sum_probs=31.9
Q ss_pred ccchhHHHHHHHHHhcC--CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 162 VGLDDRMEELLDLLIEG--PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 162 vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
|+.+.-.+.+++.+... ......|.|+|++|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 44556667777766432 23466799999999999999998887
No 130
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.15 E-value=0.012 Score=51.01 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=20.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+++|+|..|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 57999999999999999997553
No 131
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.15 E-value=0.0097 Score=52.06 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=20.4
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 132
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.13 E-value=0.059 Score=51.84 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=22.0
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+++|+|+.|+||||+++.+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999998876
No 133
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.09 E-value=0.018 Score=56.62 Aligned_cols=46 Identities=11% Similarity=0.097 Sum_probs=34.8
Q ss_pred CccccchhHHHHHHHHHhc----------------------------CCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 159 RNTVGLDDRMEELLDLLIE----------------------------GPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~----------------------------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..++|.+..++.|...+.. .......+.++|++|+|||++|+.+.+
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 3478888888888776621 011234688999999999999999998
No 134
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.08 E-value=0.0081 Score=53.38 Aligned_cols=23 Identities=9% Similarity=0.163 Sum_probs=21.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+|.|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 135
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.07 E-value=0.013 Score=52.56 Aligned_cols=24 Identities=8% Similarity=0.235 Sum_probs=21.8
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|+|+|+.|+|||||++.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHh
Confidence 356899999999999999999987
No 136
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.05 E-value=0.018 Score=53.23 Aligned_cols=37 Identities=19% Similarity=0.174 Sum_probs=27.4
Q ss_pred HHHHHHHHhcC---CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 168 MEELLDLLIEG---PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 168 ~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+.+...+..+ .....+|.|+|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 15 LARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34444444433 23467899999999999999999987
No 137
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.04 E-value=0.014 Score=54.77 Aligned_cols=49 Identities=16% Similarity=0.206 Sum_probs=34.7
Q ss_pred CCCCccccchhHHHHHHHHHhc--C-------C-CCcEEEEEECCCCChHHHHHHHHhc
Q 041567 156 SKNRNTVGLDDRMEELLDLLIE--G-------P-NQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~--~-------~-~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..-.+++|.++.++++.+.... . + .-.+-+.|+|++|+|||||++.+.+
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHH
Confidence 4455789988877776654421 0 0 0112288999999999999999998
No 138
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.04 E-value=0.013 Score=51.31 Aligned_cols=22 Identities=14% Similarity=0.155 Sum_probs=20.3
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+++|+|++|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 139
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.04 E-value=0.013 Score=51.39 Aligned_cols=23 Identities=26% Similarity=0.180 Sum_probs=20.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+|.|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 140
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.01 E-value=0.012 Score=51.45 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=20.5
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+|.|.|++|+||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 141
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.00 E-value=0.012 Score=52.12 Aligned_cols=23 Identities=9% Similarity=0.212 Sum_probs=21.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+|+|+|+.|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 142
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.00 E-value=0.013 Score=52.43 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=21.8
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|+|+|..|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 143
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.99 E-value=0.0031 Score=55.53 Aligned_cols=22 Identities=14% Similarity=-0.004 Sum_probs=18.9
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.++.|+|..|+||||++..+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999966665
No 144
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.98 E-value=0.014 Score=52.05 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=22.0
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|+|+|++|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 145
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.97 E-value=0.013 Score=54.31 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=20.4
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+|.|+|++|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999987
No 146
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.95 E-value=0.01 Score=51.54 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.++|.|.|++|+||||+++.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 46788999999999999999986
No 147
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.95 E-value=0.013 Score=50.36 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=20.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999999987
No 148
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.94 E-value=0.014 Score=51.16 Aligned_cols=24 Identities=17% Similarity=0.087 Sum_probs=21.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
....|.|+|++|+||||+++.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 149
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.94 E-value=0.013 Score=51.87 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 041567 184 VVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.|+|.|+.|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999987
No 150
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.93 E-value=0.011 Score=52.80 Aligned_cols=24 Identities=8% Similarity=0.277 Sum_probs=21.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|.|+|++|+|||||++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 151
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.89 E-value=0.014 Score=51.58 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=22.3
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|+|.|+.|+||||+++.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 152
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.88 E-value=0.026 Score=54.12 Aligned_cols=42 Identities=10% Similarity=0.154 Sum_probs=29.1
Q ss_pred cchhHHHHHHHHHhcC--CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 163 GLDDRMEELLDLLIEG--PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 163 Gr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
|-...+..+...+... .....+|+|.|..|+|||||++.+..
T Consensus 71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3333444444444333 34567999999999999999999876
No 153
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.88 E-value=0.072 Score=49.83 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=20.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.++.|+|.+|+|||||+..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46999999999999999998875
No 154
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.87 E-value=0.016 Score=51.41 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|+|.|+.|+||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999986
No 155
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.85 E-value=0.014 Score=52.78 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=20.5
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+|+|+|+.|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999976
No 156
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.85 E-value=0.016 Score=51.55 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=20.3
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 157
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.83 E-value=0.013 Score=51.47 Aligned_cols=23 Identities=9% Similarity=0.159 Sum_probs=21.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+|.|.|++|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 158
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.83 E-value=0.011 Score=51.11 Aligned_cols=22 Identities=9% Similarity=0.218 Sum_probs=20.1
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+.|.|.|++|+||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 159
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.83 E-value=0.016 Score=50.46 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=20.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...|.+.|++|+||||+++.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999986
No 160
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.81 E-value=0.012 Score=51.62 Aligned_cols=22 Identities=14% Similarity=0.273 Sum_probs=20.3
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 161
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.80 E-value=0.016 Score=53.59 Aligned_cols=24 Identities=8% Similarity=0.134 Sum_probs=22.0
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999877
No 162
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.80 E-value=0.016 Score=53.88 Aligned_cols=23 Identities=13% Similarity=0.333 Sum_probs=21.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 163
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.80 E-value=0.016 Score=50.57 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 041567 184 VVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.++|+|..|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999863
No 164
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.77 E-value=0.013 Score=51.99 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=20.2
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999876
No 165
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.77 E-value=0.018 Score=50.33 Aligned_cols=24 Identities=21% Similarity=0.113 Sum_probs=21.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|.|.|++|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 166
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.77 E-value=0.011 Score=51.61 Aligned_cols=22 Identities=9% Similarity=0.096 Sum_probs=20.1
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
++|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 167
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.76 E-value=0.017 Score=51.34 Aligned_cols=23 Identities=13% Similarity=0.003 Sum_probs=21.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 168
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.75 E-value=0.015 Score=56.16 Aligned_cols=46 Identities=17% Similarity=0.140 Sum_probs=33.6
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 157 KNRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.-.+++|.+..+..+...+.... ..-+.|+|.+|+|||+||+.+.+
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHH
T ss_pred CchhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHH
Confidence 33568999886666554444322 23388999999999999999987
No 169
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.69 E-value=0.017 Score=53.11 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=21.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+|+|+|++|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999999984
No 170
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.67 E-value=0.033 Score=54.28 Aligned_cols=37 Identities=19% Similarity=0.145 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 168 MEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 168 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..++.+.+........+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4455555554444678999999999999999998865
No 171
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.65 E-value=0.028 Score=50.52 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 168 MEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 168 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.+.+...+... ....|+|+|.+|+|||||+..+...
T Consensus 26 a~~~r~~~~~~--~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 26 ADKNRKLLNKH--GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHT--TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 34444444332 4788999999999999999998874
No 172
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.63 E-value=0.014 Score=51.75 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=20.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.++++|+|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35789999999999999999976
No 173
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.62 E-value=0.02 Score=51.66 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=22.8
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhc
Q 041567 180 NQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 180 ~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...++|.|.|++|+||||.|+.+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999987
No 174
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.62 E-value=0.014 Score=50.20 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=20.2
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 175
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.59 E-value=0.013 Score=50.98 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=17.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 176
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.58 E-value=0.02 Score=50.70 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=21.4
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|.|.|++|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999987
No 177
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.56 E-value=0.021 Score=54.59 Aligned_cols=24 Identities=8% Similarity=0.115 Sum_probs=22.0
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|+|+|..|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 467999999999999999999876
No 178
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.56 E-value=0.18 Score=55.25 Aligned_cols=22 Identities=9% Similarity=0.006 Sum_probs=20.1
Q ss_pred CcEEEEEECCCCChHHHHHHHH
Q 041567 181 QLSVVAILNSIGLDKTAFTAEA 202 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v 202 (467)
...+++|+|+.|.||||+.+.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3579999999999999999988
No 179
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.51 E-value=0.019 Score=49.02 Aligned_cols=21 Identities=5% Similarity=0.009 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 041567 184 VVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 180
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.51 E-value=0.016 Score=51.00 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=21.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+|+|.|++|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 181
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.50 E-value=0.023 Score=52.20 Aligned_cols=24 Identities=4% Similarity=0.106 Sum_probs=21.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|+|.|..|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999876
No 182
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.48 E-value=0.073 Score=53.51 Aligned_cols=41 Identities=10% Similarity=0.114 Sum_probs=29.6
Q ss_pred EEEEEECCCCChHHHHHHHHhcCccccCc-cceEEEEEcCCCCC
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNSSYVKHY-FDHLAWIPAPYHYD 225 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~v~~~~~ 225 (467)
..++|+|.+|+|||||++.+..+ .... -+..+++-+++..+
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~--~~~~~~~i~V~~~iGertt 193 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHN--IAQEHGGISVFAGVGERTR 193 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHH--HHHHTCCCEEEEEESSCHH
T ss_pred CEEEEECCCCCCccHHHHHHHhh--hhhccCcEEEEeeeccCch
Confidence 46889999999999999999874 2222 24456677776653
No 183
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.47 E-value=0.018 Score=50.25 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=21.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+|+|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 184
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.46 E-value=0.022 Score=54.54 Aligned_cols=39 Identities=13% Similarity=0.066 Sum_probs=26.4
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAP 221 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~ 221 (467)
+.+||+|.|-|||||||.+..+.- .....=..+.-|++.
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~--aLA~~GkkVllID~D 85 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA--AFSILGKRVLQIGCD 85 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEES
T ss_pred CceEEEEECCCccCHHHHHHHHHH--HHHHCCCeEEEEecC
Confidence 579999999999999998776654 222211235555555
No 185
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.43 E-value=0.027 Score=50.45 Aligned_cols=40 Identities=23% Similarity=0.208 Sum_probs=29.1
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 164 LDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 164 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.++..+.+.+.+... ..++|+|+|.+|+|||||+..+...
T Consensus 14 ~~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 14 NKRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 334445555544332 4789999999999999999998873
No 186
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.43 E-value=0.02 Score=50.13 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 041567 184 VVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 187
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.42 E-value=0.069 Score=52.25 Aligned_cols=97 Identities=16% Similarity=0.032 Sum_probs=51.5
Q ss_pred HHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccc-cCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCccccCCC
Q 041567 170 ELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYV-KHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLSKIKD 248 (467)
Q Consensus 170 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~~~~~ 248 (467)
.+++.+..-. .-..++|+|.+|.|||||++.+.+.... ...+. ++++-+++.. .++.++.+.+.... ......
T Consensus 163 raID~~~pi~-rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~--~Ev~~~~~~~~~~v--V~atad 236 (422)
T 3ice_A 163 RVLDLASPIG-RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERP--EEVTEMQRLVKGEV--VASTFD 236 (422)
T ss_dssp HHHHHHSCCB-TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCH--HHHHHHHTTCSSEE--EEECTT
T ss_pred eeeeeeeeec-CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCCh--HHHHHHHHHhCeEE--EEeCCC
Confidence 4445554432 3468999999999999999988762111 12233 3356666543 22224444432100 000011
Q ss_pred CCHHH----------HHHHHHHhhCCceEEEEEecC
Q 041567 249 KDYEM----------KKINLGEYLMTKWYLIVLDDV 274 (467)
Q Consensus 249 ~~~~~----------~~~~l~~~L~~kr~LlVlDdv 274 (467)
.+... .+++++. +++.+||++||+
T Consensus 237 ep~~~r~~~a~~alt~AEyfrd--~G~dVLil~Dsl 270 (422)
T 3ice_A 237 EPASRHVQVAEMVIEKAKRLVE--HKKDVIILLDSI 270 (422)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH--TSCEEEEEEECH
T ss_pred CCHHHHHHHHHHHHHHHHHHHh--cCCCEEEEEeCc
Confidence 11111 1223333 589999999998
No 188
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.41 E-value=0.19 Score=50.90 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=21.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+++|+|.+|+|||||++.+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 467999999999999999999876
No 189
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.40 E-value=0.017 Score=50.89 Aligned_cols=22 Identities=14% Similarity=0.273 Sum_probs=19.6
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999886
No 190
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.39 E-value=0.022 Score=50.82 Aligned_cols=23 Identities=13% Similarity=0.062 Sum_probs=21.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46999999999999999999986
No 191
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.38 E-value=0.13 Score=49.60 Aligned_cols=53 Identities=17% Similarity=0.038 Sum_probs=36.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHhh
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMFL 237 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l~ 237 (467)
.-.++.|.|.+|+||||||..++.+... +=..++|++. +.+..++. .++....
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDLT 98 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHhh
Confidence 4568999999999999999998874222 2134667665 45667777 7665543
No 192
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.36 E-value=0.2 Score=50.05 Aligned_cols=38 Identities=21% Similarity=0.137 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcC-------CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 167 RMEELLDLLIEG-------PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 167 ~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++.++|... ....++|.++|.+|+||||++..+..
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344555555432 13478999999999999999988875
No 193
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.33 E-value=0.024 Score=50.19 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=22.2
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|+|.|+.|+||||+++.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999987
No 194
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.32 E-value=0.023 Score=49.14 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=21.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..++++|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999987
No 195
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.29 E-value=0.21 Score=47.21 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+++++|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999988876
No 196
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.28 E-value=0.023 Score=51.20 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 197
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.27 E-value=0.025 Score=50.13 Aligned_cols=24 Identities=4% Similarity=0.231 Sum_probs=21.7
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..++|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 357899999999999999999986
No 198
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.26 E-value=0.025 Score=52.27 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=21.4
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999985
No 199
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.25 E-value=0.031 Score=47.72 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=21.7
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.-.+++|+|..|.|||||.+.+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999986
No 200
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.24 E-value=0.021 Score=50.89 Aligned_cols=23 Identities=4% Similarity=-0.018 Sum_probs=21.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+|+|.|+.|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 201
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.22 E-value=0.028 Score=48.74 Aligned_cols=24 Identities=17% Similarity=0.068 Sum_probs=21.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|+|.|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 202
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.20 E-value=0.19 Score=49.19 Aligned_cols=53 Identities=15% Similarity=-0.059 Sum_probs=34.1
Q ss_pred HHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccc-cCccceEEEEEcCCC
Q 041567 169 EELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYV-KHYFDHLAWIPAPYH 223 (467)
Q Consensus 169 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~wv~v~~~ 223 (467)
-.+++.|..-. +-..++|+|.+|+|||+|++.+.+.... ...+. ++++-+++.
T Consensus 163 iraID~l~Pig-rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIG-KGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHHSCCB-TTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred chhhhhccccc-CCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 45666665533 3457899999999999999998873211 11233 345666654
No 203
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.18 E-value=0.032 Score=55.88 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=35.5
Q ss_pred CccccchhHHHHHHHHHhcC------------CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 159 RNTVGLDDRMEELLDLLIEG------------PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..++|-++.++.+...+... ....+-|.++|++|+||||+|+.+..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 45789888888887666321 11245688999999999999999988
No 204
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.18 E-value=0.021 Score=51.51 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=21.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999986
No 205
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.16 E-value=0.021 Score=50.79 Aligned_cols=23 Identities=4% Similarity=-0.166 Sum_probs=21.4
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+|+|.|+.|+||||+++.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 206
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.14 E-value=0.027 Score=49.80 Aligned_cols=23 Identities=9% Similarity=-0.075 Sum_probs=21.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999988
No 207
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.09 E-value=0.022 Score=51.58 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=21.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 208
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.08 E-value=0.026 Score=49.51 Aligned_cols=21 Identities=10% Similarity=-0.032 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 041567 184 VVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 209
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.05 E-value=0.18 Score=48.50 Aligned_cols=88 Identities=14% Similarity=0.083 Sum_probs=49.8
Q ss_pred EEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCccccCCCCCHHHHHHHHHHhh
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLSKIKDKDYEMKKINLGEYL 262 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 262 (467)
.+++|+|..|.|||||++.+.. .+.. -...+.+.-.......... +.+.. ... .-......+...|
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g--~~~~-~~g~i~i~~~~e~~~~~~~---~~i~~-------~~g-gg~~~r~~la~aL 237 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIME--FIPK-EERIISIEDTEEIVFKHHK---NYTQL-------FFG-GNITSADCLKSCL 237 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGG--GSCT-TSCEEEEESSCCCCCSSCS---SEEEE-------ECB-TTBCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC--CCcC-CCcEEEECCeeccccccch---hEEEE-------EeC-CChhHHHHHHHHh
Confidence 5899999999999999999987 2222 2345555422221100000 00000 000 1122345566677
Q ss_pred CCceEEEEEecCCCcchHHHHH
Q 041567 263 MTKWYLIVLDDVWSTNVLDVVR 284 (467)
Q Consensus 263 ~~kr~LlVlDdv~~~~~~~~l~ 284 (467)
..++-+|++|...+.+.++.+.
T Consensus 238 ~~~p~ilildE~~~~e~~~~l~ 259 (330)
T 2pt7_A 238 RMRPDRIILGELRSSEAYDFYN 259 (330)
T ss_dssp TSCCSEEEECCCCSTHHHHHHH
T ss_pred hhCCCEEEEcCCChHHHHHHHH
Confidence 7788899999998766555443
No 210
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.05 E-value=0.031 Score=49.95 Aligned_cols=23 Identities=9% Similarity=-0.021 Sum_probs=21.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+|.|.|+.|+||||+++.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999987
No 211
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.04 E-value=0.026 Score=50.47 Aligned_cols=21 Identities=10% Similarity=0.154 Sum_probs=19.2
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 041567 184 VVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 212
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.03 E-value=0.12 Score=50.64 Aligned_cols=107 Identities=14% Similarity=0.130 Sum_probs=57.1
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEE-EEEcCCCCCHHHHHHHHHHhhCCCC-ccccCCCCCHHHHHHHH
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLA-WIPAPYHYDAYQILDIVTMFLLPFS-MLSKIKDKDYEMKKINL 258 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-wv~v~~~~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l 258 (467)
...+++|+|+.|+|||||.+.+.. .+.......+ ++.-.-.+. + ..... .++..-..+.......+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~--~~~~~~~g~I~~~e~~~e~~----~------~~~~~~v~Q~~~g~~~~~~~~~l 202 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPIEYV----F------KHKKSIVNQREVGEDTKSFADAL 202 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH--HHHHHSCCEEEEEESSCCSC----C------CCSSSEEEEEEBTTTBSCSHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh--hcCcCCCcEEEEecccHhhh----h------ccCceEEEeeecCCCHHHHHHHH
Confidence 357899999999999999999876 2222212233 332111100 0 00000 00000000111224567
Q ss_pred HHhhCCceEEEEEecCCCcchHHHHHHhhcCCCCCcEEEEecCcc
Q 041567 259 GEYLMTKWYLIVLDDVWSTNVLDVVREILLDNQNGSRVLITLTRI 303 (467)
Q Consensus 259 ~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivT~TR~ 303 (467)
+..|...+=+|++|.+.+.+.+..+.... ..|..|+.| +..
T Consensus 203 ~~~L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t-~H~ 243 (372)
T 2ewv_A 203 RAALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGT-LHT 243 (372)
T ss_dssp HHHTTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEEC-CCC
T ss_pred HHHhhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEE-ECc
Confidence 77777777899999998665544433332 346678877 443
No 213
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.02 E-value=0.06 Score=51.63 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.7
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|+|+|.+|+||||++..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988876
No 214
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.02 E-value=0.032 Score=50.04 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
No 215
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.02 E-value=0.029 Score=50.67 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=21.7
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+++|+|+.|+|||||.+.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 356999999999999999999987
No 216
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.92 E-value=0.032 Score=53.18 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=21.4
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+++|+|.+|+|||||++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999998875
No 217
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.90 E-value=0.059 Score=51.36 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=22.0
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|+|+|..|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999887
No 218
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.89 E-value=0.029 Score=50.20 Aligned_cols=21 Identities=10% Similarity=0.080 Sum_probs=19.2
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 041567 184 VVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 219
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.87 E-value=0.13 Score=48.67 Aligned_cols=23 Identities=17% Similarity=0.047 Sum_probs=21.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+++|+|.+|+||||++..++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999887
No 220
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.87 E-value=0.032 Score=52.48 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=21.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999873
No 221
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.85 E-value=0.097 Score=61.51 Aligned_cols=89 Identities=17% Similarity=0.029 Sum_probs=54.4
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCccccCCCCCHHHHHHHHHH
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLSKIKDKDYEMKKINLGE 260 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~ 260 (467)
..+.+.|+|++|+|||+||.++... ...+=..++|+++...++... ++.++.+...-.-....+.++....++.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~----a~~~G~dl~~l~v~~~~~~E~~l~~~~~ 1499 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY----ARKLGVDIDNLLCSQPDTGEQALEICDA 1499 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH----HHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH----HHHcCCCchhceeecCChHHHHHHHHHH
Confidence 4679999999999999999999873 333323577888887766554 2333311100000011233455555555
Q ss_pred hhC-CceEEEEEecCC
Q 041567 261 YLM-TKWYLIVLDDVW 275 (467)
Q Consensus 261 ~L~-~kr~LlVlDdv~ 275 (467)
..+ .+.-+||+|.+.
T Consensus 1500 lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1500 LARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHTCCSEEEESCGG
T ss_pred HHhcCCCCEEEEcChh
Confidence 543 467799999984
No 222
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.85 E-value=0.17 Score=50.29 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=22.2
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|.|+|++|+||||+|+.+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999987
No 223
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.84 E-value=0.16 Score=51.01 Aligned_cols=64 Identities=14% Similarity=0.174 Sum_probs=41.5
Q ss_pred HHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCC-HHHHH-HHHHH
Q 041567 170 ELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYD-AYQIL-DIVTM 235 (467)
Q Consensus 170 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~-~il~~ 235 (467)
+.++.|..-. +-.-++|.|.+|+|||+|++.+.++- .+.+-+.++++-+++... ..++. ++...
T Consensus 142 r~ID~l~pig-kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA-KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE-TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc-cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 4555554322 34678999999999999999988731 123346677888877653 34455 55543
No 224
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.82 E-value=0.033 Score=50.88 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|++|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 57999999999999999998873
No 225
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.81 E-value=0.056 Score=49.34 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=21.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|+.|+|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999976
No 226
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.81 E-value=0.15 Score=50.71 Aligned_cols=24 Identities=17% Similarity=0.058 Sum_probs=21.2
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|+|+|.+|+||||++..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999988876
No 227
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.80 E-value=0.024 Score=51.14 Aligned_cols=23 Identities=13% Similarity=-0.137 Sum_probs=20.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 228
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.73 E-value=0.29 Score=49.21 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=33.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHH
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIV 233 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il 233 (467)
...++.|.|.+|+||||||..+..+..... =..++|++... +..++. .++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHHH
Confidence 456999999999999999999887422211 12577776543 445565 554
No 229
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.72 E-value=0.04 Score=52.43 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=21.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+++|+|..|+||||+++.+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357999999999999999998876
No 230
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.65 E-value=0.038 Score=50.73 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=20.8
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+++|+|+.|.|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 7899999999999999999976
No 231
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.65 E-value=0.015 Score=51.92 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 041567 184 VVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+|+|.|..|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 789999999999999999876
No 232
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.64 E-value=0.032 Score=49.19 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 041567 184 VVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
+++|+|..|+|||||++.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999988763
No 233
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.57 E-value=0.026 Score=51.24 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=16.5
Q ss_pred cEEEEEECCCCChHHHHHHHHh-c
Q 041567 182 LSVVAILNSIGLDKTAFTAEAY-N 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~-~ 204 (467)
..+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 4689999999999999999998 5
No 234
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.56 E-value=0.037 Score=49.02 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 041567 184 VVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999987
No 235
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.55 E-value=0.066 Score=49.75 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=21.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|+.|+|||||.+.+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 56899999999999999999976
No 236
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.54 E-value=0.058 Score=45.84 Aligned_cols=23 Identities=9% Similarity=0.141 Sum_probs=20.8
Q ss_pred EEEEEECCCCChHHHHHHHHhcC
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 237
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.53 E-value=0.063 Score=50.27 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|+.|+|||||.+.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999975
No 238
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.46 E-value=0.098 Score=54.84 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=36.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 159 RNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..++|.+..++.+...+..+ ..+.|+|++|+||||||+.+..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhc
Confidence 45899998888888777654 4789999999999999999988
No 239
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.42 E-value=0.031 Score=51.67 Aligned_cols=23 Identities=13% Similarity=0.062 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+|+|+|+.|+||||+++.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 240
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.40 E-value=0.032 Score=50.12 Aligned_cols=23 Identities=9% Similarity=-0.009 Sum_probs=20.7
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 241
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.40 E-value=0.35 Score=49.33 Aligned_cols=53 Identities=8% Similarity=0.030 Sum_probs=35.9
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHH
Q 041567 180 NQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTM 235 (467)
Q Consensus 180 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~ 235 (467)
..-.++.|.|.+|+||||||..+..+...+ +=..++|++... +..++. .++..
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHH
Confidence 345789999999999999999988742222 112567777644 456666 65544
No 242
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.39 E-value=0.024 Score=49.10 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=20.4
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
++++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999886
No 243
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.39 E-value=0.059 Score=47.93 Aligned_cols=36 Identities=11% Similarity=0.118 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 168 MEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 168 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+..+..++..- +....+.|+|++|.||||+|..+++
T Consensus 45 ~~~l~~~~~~i-Pkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 45 LGALKSFLKGT-PKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHTC-TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CcccEEEEECCCCCCHHHHHHHHHH
Confidence 45556655532 2234689999999999999988887
No 244
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.35 E-value=0.21 Score=50.33 Aligned_cols=62 Identities=13% Similarity=0.112 Sum_probs=41.7
Q ss_pred HHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCC-HHHHH-HHHH
Q 041567 171 LLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYD-AYQIL-DIVT 234 (467)
Q Consensus 171 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~-~il~ 234 (467)
.++.|..-. +-.-++|.|..|+|||+|++.+.++- .+.+-+.++++-+++... ..++. ++..
T Consensus 155 vID~l~pig-kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 155 VVNLLAPYR-RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKE 218 (498)
T ss_dssp THHHHSCCC-TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHH
T ss_pred Eeeeecccc-cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhc
Confidence 445554332 34578999999999999999988731 223456788888887764 34455 5554
No 245
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.31 E-value=0.049 Score=52.38 Aligned_cols=23 Identities=9% Similarity=0.273 Sum_probs=21.5
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.++|.|+|+.|+||||||..++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999988
No 246
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.28 E-value=0.039 Score=50.05 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|+.|+|||||.+.+..
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999976
No 247
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.27 E-value=0.044 Score=47.55 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=21.4
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.++++|+|..|+|||||+..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 57899999999999999999887
No 248
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.27 E-value=0.038 Score=49.47 Aligned_cols=23 Identities=22% Similarity=0.109 Sum_probs=20.7
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|..|.|||||.+.+..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999875
No 249
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.26 E-value=0.046 Score=50.02 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=21.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|..|+|||||.+.+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999987
No 250
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.26 E-value=0.045 Score=52.78 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=20.7
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+|+|.|+.|+||||||..+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999987
No 251
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.23 E-value=0.045 Score=49.46 Aligned_cols=21 Identities=14% Similarity=0.072 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 041567 184 VVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 252
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.20 E-value=0.046 Score=48.88 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 041567 184 VVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+|.|.|++|+||||.|+.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999987
No 253
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.13 E-value=0.088 Score=51.65 Aligned_cols=35 Identities=14% Similarity=0.144 Sum_probs=26.0
Q ss_pred HHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 170 ELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 170 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+.+-+.-.-+...+++|+|++|.|||||++.+..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 33443333333457999999999999999999987
No 254
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.13 E-value=0.085 Score=48.82 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=21.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|..|.|||||.+.+..
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46999999999999999999976
No 255
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.13 E-value=0.099 Score=56.37 Aligned_cols=46 Identities=17% Similarity=0.222 Sum_probs=37.0
Q ss_pred CccccchhHHHHHHHHHhcC-------CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 159 RNTVGLDDRMEELLDLLIEG-------PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..++|.+..++.+...+... +.....+.++|++|+|||++|+.+.+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 46889999998888776531 12345789999999999999999988
No 256
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.12 E-value=0.08 Score=48.71 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|..|.|||||.+.+..
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999976
No 257
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=93.12 E-value=1.7 Score=41.97 Aligned_cols=25 Identities=12% Similarity=0.205 Sum_probs=22.3
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
....|+++|.+|+|||||...+...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999875
No 258
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.12 E-value=0.057 Score=49.59 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=21.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.-.+++|+|..|.|||||.+.+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 357999999999999999999975
No 259
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.11 E-value=0.056 Score=52.64 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=21.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+++|+|..|+||||+++.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 467999999999999999998876
No 260
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.10 E-value=0.051 Score=49.39 Aligned_cols=23 Identities=13% Similarity=0.045 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...|.|.|++|+||||+|+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 261
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.08 E-value=0.049 Score=49.65 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=21.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 262
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.08 E-value=0.049 Score=47.27 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 041567 184 VVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999873
No 263
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.07 E-value=0.057 Score=49.77 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=21.7
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...++.+.|.||+||||++..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 568899999999999999999985
No 264
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.05 E-value=0.051 Score=51.37 Aligned_cols=22 Identities=14% Similarity=0.289 Sum_probs=20.5
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 265
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.05 E-value=0.043 Score=49.09 Aligned_cols=21 Identities=10% Similarity=-0.027 Sum_probs=19.3
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 041567 184 VVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 266
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.04 E-value=0.087 Score=49.22 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=21.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.-.+++|+|..|.|||||.+.+..
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999999999976
No 267
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.03 E-value=0.05 Score=49.89 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=21.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|..|.|||||.+.+..
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999976
No 268
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.03 E-value=0.072 Score=47.20 Aligned_cols=45 Identities=9% Similarity=0.022 Sum_probs=28.7
Q ss_pred EEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH
Q 041567 184 VVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL 230 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 230 (467)
.|+|=|.-|+||||.++.+.+ ..+..-..+++..-.......+..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~i 46 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKI 46 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHH
Confidence 478889999999999999987 444433334444443333333333
No 269
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.01 E-value=0.1 Score=47.42 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=22.4
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
....|.|.|+.|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999883
No 270
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.01 E-value=0.053 Score=50.44 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=21.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.-.+++|+|+.|.|||||.+.+..
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 356999999999999999999976
No 271
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.97 E-value=0.054 Score=49.99 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=21.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|..|.|||||.+.+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999987
No 272
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.97 E-value=0.051 Score=50.66 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=21.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|..|.|||||.+.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999976
No 273
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.96 E-value=0.051 Score=50.38 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|+.|.|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999975
No 274
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.90 E-value=0.055 Score=51.77 Aligned_cols=22 Identities=9% Similarity=0.193 Sum_probs=20.7
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+|.|+|+.|+||||||+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 275
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.90 E-value=0.054 Score=49.22 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=21.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|..|.|||||.+.+..
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999987
No 276
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.88 E-value=0.046 Score=49.19 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=20.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|..|.|||||.+.++.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999976
No 277
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.87 E-value=0.4 Score=48.04 Aligned_cols=64 Identities=19% Similarity=0.086 Sum_probs=40.8
Q ss_pred HHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHHh
Q 041567 169 EELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTMF 236 (467)
Q Consensus 169 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~l 236 (467)
..|-+.+ .+=....++.|.|.+|+||||||..++.+..... =..++|++.. -+..++. .++...
T Consensus 188 ~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 188 KELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp HHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred Hhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHHHH
Confidence 3444444 4433457899999999999999999887422211 1246777664 4456666 665443
No 278
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.86 E-value=0.095 Score=48.78 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=21.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|..|.|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 46899999999999999999976
No 279
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.84 E-value=0.069 Score=46.17 Aligned_cols=26 Identities=15% Similarity=0.100 Sum_probs=22.6
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 180 NQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 180 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.....|+|+|.+|+|||||...+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34667899999999999999999874
No 280
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.83 E-value=0.061 Score=50.14 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=21.4
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|..|.|||||.+.++.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999987
No 281
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.75 E-value=0.067 Score=44.75 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=20.5
Q ss_pred EEEEEECCCCChHHHHHHHHhcC
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
+-|.++|.+|+|||||...+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999874
No 282
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.75 E-value=0.06 Score=50.00 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=21.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|..|.|||||.+.+..
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46999999999999999999976
No 283
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.74 E-value=0.064 Score=51.01 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=21.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.++|.|.|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999999987
No 284
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.74 E-value=0.052 Score=47.50 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=21.5
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
...|+|+|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 567899999999999999999874
No 285
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.73 E-value=0.033 Score=52.70 Aligned_cols=24 Identities=8% Similarity=0.176 Sum_probs=18.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+..+|+|.|..|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 286
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.72 E-value=0.069 Score=48.53 Aligned_cols=45 Identities=18% Similarity=0.125 Sum_probs=30.5
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL 230 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 230 (467)
-.++.|.|.+|+||||||..++.. ....=..++|++.... ..++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~~--~~~~~ 67 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEEH--PVQVR 67 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSSC--HHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccCC--HHHHH
Confidence 468999999999999999887653 2112235777775543 34444
No 287
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.69 E-value=0.055 Score=58.30 Aligned_cols=95 Identities=17% Similarity=0.124 Sum_probs=57.6
Q ss_pred CCCccccchhHHHHHHHHHhcC-----------CCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCC
Q 041567 157 KNRNTVGLDDRMEELLDLLIEG-----------PNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYD 225 (467)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~ 225 (467)
.-.++.|.++.+++|.+.+.-. -...+-|.++|++|.|||.||+.+++ +....| +.++.
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~--e~~~~f-----~~v~~--- 544 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQANF-----ISIKG--- 544 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHH--TTTCEE-----EECCH---
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHH--HhCCce-----EEecc---
Confidence 3456778888888887765421 12345578999999999999999999 443333 33321
Q ss_pred HHHHHHHHHHhhCCCCccccCCCCCHHHHHHHHHHhhCCceEEEEEecCC
Q 041567 226 AYQILDIVTMFLLPFSMLSKIKDKDYEMKKINLGEYLMTKWYLIVLDDVW 275 (467)
Q Consensus 226 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~ 275 (467)
. +++... ...+...+...+...-+..++.|++|++.
T Consensus 545 -~---~l~s~~----------vGese~~vr~lF~~Ar~~~P~IifiDEiD 580 (806)
T 3cf2_A 545 -P---ELLTMW----------FGESEANVREIFDKARQAAPCVLFFDELD 580 (806)
T ss_dssp -H---HHHTTT----------CSSCHHHHHHHHHHHHTTCSEEEECSCGG
T ss_pred -c---hhhccc----------cchHHHHHHHHHHHHHHcCCceeechhhh
Confidence 1 122111 12233333333333335678999999985
No 288
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.67 E-value=0.074 Score=49.41 Aligned_cols=109 Identities=13% Similarity=0.101 Sum_probs=55.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEE-cCCCCCHHHHHHHHHHhhCCCCccccCCCCCHHHHHHHHH
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIP-APYHYDAYQILDIVTMFLLPFSMLSKIKDKDYEMKKINLG 259 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~-v~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~ 259 (467)
...+++|+|+.|+|||||.+.+.. .+...+...+++. ..-.+-......++.+ .. -.... ..+...+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g--~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q----~~--~gl~~---~~l~~~la 92 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPIEYVFKHKKSIVNQ----RE--VGEDT---KSFADALR 92 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH--HHHHHCCCEEEEEESSCCSCCCCSSSEEEE----EE--BTTTB---SCHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH--hCCCCCCCEEEEcCCcceeecCCcceeeeH----HH--hCCCH---HHHHHHHH
Confidence 357999999999999999999876 2322223333332 1100000000000000 00 00011 12345566
Q ss_pred HhhCCceEEEEEecCCCcchHHHHHHhhcCCCCCcEEEEecCccc
Q 041567 260 EYLMTKWYLIVLDDVWSTNVLDVVREILLDNQNGSRVLITLTRIK 304 (467)
Q Consensus 260 ~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivT~TR~~ 304 (467)
..|..++=+|++|...+.+....+.... ..|.-|++| |...
T Consensus 93 ~aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t-~H~~ 133 (261)
T 2eyu_A 93 AALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGT-LHTN 133 (261)
T ss_dssp HHHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEE-ECCS
T ss_pred HHHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEE-eCcc
Confidence 6665667788999997655444433332 236667887 5443
No 289
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.66 E-value=0.058 Score=48.97 Aligned_cols=24 Identities=29% Similarity=0.236 Sum_probs=22.0
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|+|.|..|+|||||++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 467999999999999999999887
No 290
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.64 E-value=0.061 Score=49.57 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|..|.|||||.+.+..
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999976
No 291
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.60 E-value=0.11 Score=44.42 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
+...|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999874
No 292
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.58 E-value=0.059 Score=47.41 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=21.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
...|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999875
No 293
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.53 E-value=0.081 Score=45.72 Aligned_cols=24 Identities=8% Similarity=0.106 Sum_probs=21.5
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
...|+++|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999874
No 294
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.50 E-value=0.064 Score=50.34 Aligned_cols=23 Identities=13% Similarity=-0.057 Sum_probs=21.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|..|.|||||.+.+..
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 46899999999999999999976
No 295
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.48 E-value=0.065 Score=49.54 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=21.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|..|.|||||.+.+..
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999986
No 296
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.47 E-value=0.068 Score=48.63 Aligned_cols=25 Identities=12% Similarity=-0.007 Sum_probs=22.2
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhc
Q 041567 180 NQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 180 ~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
....+|+|.|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999886
No 297
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.46 E-value=0.08 Score=46.01 Aligned_cols=25 Identities=12% Similarity=0.025 Sum_probs=21.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999874
No 298
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.43 E-value=0.26 Score=57.98 Aligned_cols=102 Identities=18% Similarity=0.004 Sum_probs=61.5
Q ss_pred HHHHHHHHh-cCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCccccC
Q 041567 168 MEELLDLLI-EGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLSKI 246 (467)
Q Consensus 168 ~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~~~ 246 (467)
...|-..|- .+=....++.|.|.+|+||||||.++... ....=..++|++....++... ++.++.......-.
T Consensus 368 ~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~--~a~~G~~vlyis~E~s~~~~~----a~~lGvd~~~L~I~ 441 (2050)
T 3cmu_A 368 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY----ARKLGVDIDNLLCS 441 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH----HHHTTCCTTTCEEE
T ss_pred CHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcCCCHHHHH----HHHcCCCHHHeEEe
Confidence 344555553 22234579999999999999999999874 332223688998877766431 23333321100001
Q ss_pred CCCCHHHHHHHHHHhh-CCceEEEEEecCC
Q 041567 247 KDKDYEMKKINLGEYL-MTKWYLIVLDDVW 275 (467)
Q Consensus 247 ~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~ 275 (467)
...+.+++...++... ..+.-+||+|-+.
T Consensus 442 ~~~~~e~il~~~~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 442 QPDTGEQALEICDALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp CCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEECCHH
Confidence 2345566666666544 2456699999874
No 299
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.40 E-value=0.069 Score=50.76 Aligned_cols=24 Identities=8% Similarity=0.147 Sum_probs=21.8
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.-.+++|+|+.|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 457899999999999999999986
No 300
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.35 E-value=0.067 Score=53.15 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=22.1
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 467999999999999999999987
No 301
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.35 E-value=0.13 Score=49.71 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=25.4
Q ss_pred HHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 171 LLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 171 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+++-+.-.-....+++|+|.+|+|||||.+.+..
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3443432223568999999999999999999874
No 302
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.32 E-value=0.087 Score=50.00 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=21.8
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..++|.|+|+.|+||||||..+..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 357899999999999999999987
No 303
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.32 E-value=0.078 Score=53.06 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+|+|+|.+|+||||++..+..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999988876
No 304
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=92.28 E-value=0.71 Score=40.72 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=21.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..--|.|+|.+|+|||||...+.+.
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcC
Confidence 3456889999999999999999875
No 305
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.26 E-value=0.11 Score=49.15 Aligned_cols=41 Identities=12% Similarity=0.068 Sum_probs=27.7
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCC
Q 041567 180 NQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPY 222 (467)
Q Consensus 180 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~ 222 (467)
...++|+|+|-||+||||+|..+..- ....=..++-|+...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCC
Confidence 35789999999999999999887762 222212355565543
No 306
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.23 E-value=0.078 Score=45.04 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..-|+|+|.+|+|||||...+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456889999999999999999874
No 307
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.16 E-value=0.13 Score=52.48 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=20.4
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|+|+|.+|+||||++..+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988874
No 308
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.10 E-value=0.074 Score=44.79 Aligned_cols=24 Identities=4% Similarity=0.094 Sum_probs=20.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.--|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 446789999999999999999864
No 309
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.09 E-value=0.099 Score=44.14 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.--|+|+|.+|+|||||...+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999999865
No 310
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.05 E-value=0.14 Score=47.40 Aligned_cols=35 Identities=9% Similarity=0.058 Sum_probs=26.6
Q ss_pred HHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 170 ELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 170 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-+..+|....+...-|.++|++|.|||.+|..+.+
T Consensus 92 ~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 92 VFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 34555554423456799999999999999999987
No 311
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.04 E-value=0.23 Score=57.60 Aligned_cols=90 Identities=17% Similarity=0.033 Sum_probs=56.2
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCccccCCCCCHHHHHHHHHH
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLSKIKDKDYEMKKINLGE 260 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~ 260 (467)
.-.++.|.|.+|+||||||.++... ....=..++|++....++... +..++.......-....+.+++...+..
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~--~~~~G~~vlyis~E~s~~~~~----a~~lGvd~~~L~i~~~~~~e~~l~~l~~ 455 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY----ARKLGVDIDNLLCSQPDTGEQALEICDA 455 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHHH----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEccCchHHHH----HHHcCCCHHHeEEcCCCCHHHHHHHHHH
Confidence 4679999999999999999998874 222224688998887776531 2333322110001122345666666655
Q ss_pred hhC-CceEEEEEecCCC
Q 041567 261 YLM-TKWYLIVLDDVWS 276 (467)
Q Consensus 261 ~L~-~kr~LlVlDdv~~ 276 (467)
..+ .+.-+||+|-+..
T Consensus 456 lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 456 LARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHTCCSEEEESCSTT
T ss_pred HHHhcCCCEEEECCHHH
Confidence 443 4566999999853
No 312
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.04 E-value=0.35 Score=48.52 Aligned_cols=61 Identities=16% Similarity=0.120 Sum_probs=37.8
Q ss_pred HHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHH
Q 041567 169 EELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVT 234 (467)
Q Consensus 169 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~ 234 (467)
..|-+.+ .+=....++.|.|.+|+||||||..++.+...+ =..++|++... +..++. .++.
T Consensus 185 ~~LD~~l-gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~~ 246 (444)
T 3bgw_A 185 TELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLIV 246 (444)
T ss_dssp HHHHHHH-SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHHH
T ss_pred HHHHhhc-CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHHH
Confidence 3444444 332345689999999999999999988743222 12567776543 344455 4443
No 313
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.99 E-value=0.072 Score=44.59 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 041567 184 VVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
-|.++|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999865
No 314
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.95 E-value=0.078 Score=50.02 Aligned_cols=39 Identities=10% Similarity=0.108 Sum_probs=27.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccc-eEEEEEcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFD-HLAWIPAP 221 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~ 221 (467)
.-.+++|.|.+|+|||||++.+... ....-. .++|++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~--~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ--WGTAMGKKVGLAMLE 73 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH--HHHTSCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHHHcCCeEEEEeCc
Confidence 3569999999999999999998873 221112 35566543
No 315
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.89 E-value=0.13 Score=49.61 Aligned_cols=25 Identities=12% Similarity=0.097 Sum_probs=22.1
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhc
Q 041567 180 NQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 180 ~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+..+|+|+|.+|+|||||+..+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4578999999999999999998864
No 316
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.88 E-value=0.099 Score=46.23 Aligned_cols=23 Identities=22% Similarity=0.098 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...|.|.|..|+||||||..+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999987
No 317
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.85 E-value=0.092 Score=44.31 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=20.3
Q ss_pred EEEEEECCCCChHHHHHHHHhcC
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
--|+|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999874
No 318
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.85 E-value=0.091 Score=44.38 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=19.5
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
--|+|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4588999999999999999865
No 319
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.84 E-value=0.075 Score=50.55 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=21.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.-.+++|+|..|.|||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 357999999999999999999976
No 320
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.80 E-value=0.091 Score=44.10 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.4
Q ss_pred EEEEEECCCCChHHHHHHHHhcC
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.-|+++|.+|+|||||...+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999999865
No 321
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.76 E-value=0.084 Score=45.76 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.5
Q ss_pred EEEEEECCCCChHHHHHHHHhcC
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
--|.++|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999865
No 322
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=91.75 E-value=0.18 Score=46.58 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 169 EELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 169 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.++.+.+.........|+|+|.+|+|||||...+...
T Consensus 23 ~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 23 IEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp HHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred HHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3444445444445667899999999999999999875
No 323
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.73 E-value=0.079 Score=50.74 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=22.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
+.++++|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999863
No 324
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.70 E-value=0.091 Score=47.91 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=21.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...|.|.|..|+||||+++.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 325
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.64 E-value=0.12 Score=52.68 Aligned_cols=46 Identities=11% Similarity=0.087 Sum_probs=32.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 159 RNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+..+.|.+..+.+.+..-...+...+|.+.|+.|+||||+|+.+..
T Consensus 372 P~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~ 417 (511)
T 1g8f_A 372 PEWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLS 417 (511)
T ss_dssp CTTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred CccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHH
Confidence 3445555555555554422223457899999999999999999988
No 326
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.61 E-value=0.14 Score=47.32 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=25.7
Q ss_pred EEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCC
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPY 222 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~ 222 (467)
++|+|.|-||+||||+|..+..- ....=..++-|+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~--la~~G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSG--LHAMGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH--HHTTTCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHH--HHHCCCcEEEEcCCC
Confidence 57888999999999999888762 222212355555543
No 327
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=91.59 E-value=0.19 Score=46.68 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=26.8
Q ss_pred HHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 170 ELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 170 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
++...+...+.....|+++|.+|+|||||...+.+.
T Consensus 27 ~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 27 ELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp HHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred HHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 344444444444667899999999999999999875
No 328
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.59 E-value=0.086 Score=49.22 Aligned_cols=21 Identities=14% Similarity=0.417 Sum_probs=19.4
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 041567 184 VVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999986
No 329
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.57 E-value=0.26 Score=44.18 Aligned_cols=23 Identities=13% Similarity=-0.031 Sum_probs=21.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...|.|-|..|+||||+++.+.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 330
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.55 E-value=0.093 Score=44.10 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.1
Q ss_pred EEEEEECCCCChHHHHHHHHhcC
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
--|+|+|.+|+|||||...+.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999864
No 331
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.53 E-value=0.1 Score=43.98 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=20.5
Q ss_pred EEEEEECCCCChHHHHHHHHhcC
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
--|+|+|.+|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999875
No 332
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.52 E-value=0.12 Score=51.71 Aligned_cols=91 Identities=13% Similarity=0.208 Sum_probs=49.4
Q ss_pred EEEEEECCCCChHHHHHHHHhcCccccCccc----eEEEEEcCCCCC-HHHHH-HHHHHhhCCC-CccccCCCCCHHHH-
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNSSYVKHYFD----HLAWIPAPYHYD-AYQIL-DIVTMFLLPF-SMLSKIKDKDYEMK- 254 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~----~~~wv~v~~~~~-~~~~~-~il~~l~~~~-~~~~~~~~~~~~~~- 254 (467)
.-++|.|..|+|||+|+..+.+.... +-+ .++++-+++... ..++. ++...=.... -......+.+....
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 45688999999999999999884332 223 566777776543 33444 4433210000 00001111221111
Q ss_pred -----HHHHHHhh---CCceEEEEEecCC
Q 041567 255 -----KINLGEYL---MTKWYLIVLDDVW 275 (467)
Q Consensus 255 -----~~~l~~~L---~~kr~LlVlDdv~ 275 (467)
.-.+.+++ .++.+||++||+-
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 12234444 3789999999983
No 333
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.51 E-value=0.14 Score=43.63 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=21.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
...-|+|+|.+|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999875
No 334
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.50 E-value=0.1 Score=43.94 Aligned_cols=22 Identities=9% Similarity=0.208 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 041567 184 VVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
-|.++|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998865
No 335
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.49 E-value=0.097 Score=43.86 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.1
Q ss_pred EEEEEECCCCChHHHHHHHHhcC
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
--|+|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999998764
No 336
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.48 E-value=0.082 Score=44.52 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=19.4
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 041567 184 VVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
-|+|+|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999998763
No 337
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.47 E-value=0.092 Score=45.01 Aligned_cols=23 Identities=13% Similarity=0.047 Sum_probs=20.7
Q ss_pred EEEEEECCCCChHHHHHHHHhcC
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999874
No 338
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.47 E-value=0.17 Score=45.74 Aligned_cols=108 Identities=16% Similarity=0.123 Sum_probs=55.6
Q ss_pred EEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCccc-----cCCCCCHHHHHHH
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLS-----KIKDKDYEMKKIN 257 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~-----~~~~~~~~~~~~~ 257 (467)
-.|.+.|.||+||||+|..+.... ....++ +..+.+...-+.. ....+..+........ .....+....
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l-~~~G~~-V~v~d~D~q~~~~-~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~--- 80 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQ-LRQGVR-VMAGVVETHGRAE-TEALLNGLPQQPLLRTEYRGMTLEEMDLDAL--- 80 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH-HHTTCC-EEEEECCCTTCHH-HHHHHTTSCBCCCEEEEETTEEEEECCHHHH---
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH-HHCCCC-EEEEEeCCCCChh-HHHHhcCccccCcceeecCCcccccccHHHH---
Confidence 347789999999999988887731 222343 4445554432222 1122332222100000 0011232222
Q ss_pred HHHhhCCceEEEEEecCCCc--------chHHHHHHhhcCCCCCcEEEEecCccc
Q 041567 258 LGEYLMTKWYLIVLDDVWST--------NVLDVVREILLDNQNGSRVLITLTRIK 304 (467)
Q Consensus 258 l~~~L~~kr~LlVlDdv~~~--------~~~~~l~~~l~~~~~gs~iivT~TR~~ 304 (467)
+. .+.=++|+|++-.. ..|..+...++ .|-.++.| +...
T Consensus 81 L~----~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~---sgidVitT-~Nlq 127 (228)
T 2r8r_A 81 LK----AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA---AGIDVYTT-VNVQ 127 (228)
T ss_dssp HH----HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH---TTCEEEEE-EEGG
T ss_pred Hh----cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc---CCCCEEEE-cccc
Confidence 22 24569999987532 36777766554 35568888 5544
No 339
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.46 E-value=0.12 Score=50.13 Aligned_cols=24 Identities=17% Similarity=0.061 Sum_probs=21.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|+|+|.+|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999999885
No 340
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.37 E-value=0.079 Score=49.08 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=21.8
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+...|+|.|..|+||||+++.+.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998887
No 341
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.36 E-value=0.42 Score=48.80 Aligned_cols=53 Identities=13% Similarity=0.071 Sum_probs=37.8
Q ss_pred HHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHH
Q 041567 170 ELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAY 227 (467)
Q Consensus 170 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 227 (467)
++++.|..-. +-..++|.|..|+|||+|++.+.+. .+-+.++++-+++....-
T Consensus 216 rvID~l~Pig-kGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev 268 (588)
T 3mfy_A 216 RVIDTFFPQA-KGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEM 268 (588)
T ss_dssp HHHHHHSCEE-TTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHH
T ss_pred chhhccCCcc-cCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHH
Confidence 4555554322 3467899999999999999998873 233578888888876543
No 342
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.29 E-value=0.097 Score=49.39 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=21.7
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.-.+++|+|..|.|||||.+.+..
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 356999999999999999999987
No 343
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.28 E-value=0.11 Score=45.13 Aligned_cols=24 Identities=17% Similarity=0.182 Sum_probs=20.6
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.--|+|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999888764
No 344
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.28 E-value=0.11 Score=46.11 Aligned_cols=25 Identities=12% Similarity=0.025 Sum_probs=22.0
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
....|.|+|.+|+|||||...+.+.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999875
No 345
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.20 E-value=0.11 Score=43.69 Aligned_cols=21 Identities=10% Similarity=-0.010 Sum_probs=18.8
Q ss_pred EEEECCCCChHHHHHHHHhcC
Q 041567 185 VAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~~ 205 (467)
|+++|.+|+|||||...+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999998753
No 346
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.12 E-value=0.12 Score=44.01 Aligned_cols=24 Identities=17% Similarity=0.073 Sum_probs=20.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.--|+|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999998864
No 347
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.12 E-value=0.12 Score=44.09 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..-|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999999864
No 348
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.08 E-value=0.11 Score=45.14 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=22.0
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
....|+|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999874
No 349
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.07 E-value=0.1 Score=45.11 Aligned_cols=24 Identities=13% Similarity=0.058 Sum_probs=20.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.--|+|+|.+|+|||||...+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999999875
No 350
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.03 E-value=0.15 Score=43.54 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=21.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
...-|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3567899999999999999998764
No 351
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.03 E-value=0.12 Score=44.91 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=20.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.--|.|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 456889999999999999988764
No 352
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.02 E-value=0.076 Score=46.91 Aligned_cols=24 Identities=17% Similarity=-0.026 Sum_probs=21.4
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
...|+|+|.+|+|||||.+.+...
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999999988764
No 353
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.98 E-value=0.13 Score=50.19 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...++|+|..|.|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 354
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=90.95 E-value=0.12 Score=43.59 Aligned_cols=24 Identities=8% Similarity=0.122 Sum_probs=20.6
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.--|+|+|.+|+|||||...+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999999864
No 355
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.95 E-value=0.13 Score=50.08 Aligned_cols=23 Identities=9% Similarity=0.121 Sum_probs=21.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|+.|.|||||.+.+..
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHhc
Confidence 56999999999999999999976
No 356
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=90.95 E-value=0.15 Score=43.50 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=21.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
...-|+|+|.+|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999999875
No 357
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.93 E-value=0.14 Score=43.86 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=21.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..--|.|+|.+|+|||||...+.+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999999865
No 358
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=90.90 E-value=0.15 Score=43.89 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=20.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.--|+|+|.+|+|||||...+.+.
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 345889999999999999999865
No 359
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.88 E-value=0.12 Score=44.61 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=19.7
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+.+|+|..|.|||||+..++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3889999999999999998864
No 360
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.84 E-value=0.12 Score=50.95 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=20.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.++|.|.|+.|+||||||..+..
T Consensus 2 ~~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHH
Confidence 36899999999999999999887
No 361
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.83 E-value=0.15 Score=44.91 Aligned_cols=24 Identities=8% Similarity=0.040 Sum_probs=20.7
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.--|+|+|.+|+|||||...+.++
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999988864
No 362
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=90.83 E-value=0.11 Score=45.63 Aligned_cols=24 Identities=13% Similarity=0.200 Sum_probs=20.7
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...-|+|+|.+|+|||||...+.+
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 356789999999999999999853
No 363
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.79 E-value=0.12 Score=43.95 Aligned_cols=25 Identities=12% Similarity=0.228 Sum_probs=21.7
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
...-|.|+|.+|+|||||...+.+.
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3567899999999999999999865
No 364
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=90.76 E-value=0.12 Score=44.63 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=21.8
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
....|+|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3457889999999999999999875
No 365
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=90.75 E-value=0.17 Score=42.63 Aligned_cols=24 Identities=21% Similarity=0.047 Sum_probs=20.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
...|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999764
No 366
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.72 E-value=0.11 Score=44.82 Aligned_cols=22 Identities=5% Similarity=0.080 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 041567 184 VVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
-|+|+|.+|+|||||...+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999875
No 367
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=90.72 E-value=0.2 Score=44.02 Aligned_cols=41 Identities=15% Similarity=0.098 Sum_probs=27.6
Q ss_pred EEEEEE-CCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCC
Q 041567 183 SVVAIL-NSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYD 225 (467)
Q Consensus 183 ~vi~I~-G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~ 225 (467)
++|+|+ +-||+||||+|..+... ....=..++-++.....+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~--la~~g~~vlliD~D~~~~ 43 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATA--LSRSGYNIAVVDTDPQMS 43 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHH--HHHTTCCEEEEECCTTCH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHH--HHHCCCeEEEEECCCCCC
Confidence 578887 67999999999888763 322223466677664443
No 368
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=90.72 E-value=0.16 Score=43.76 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=21.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
...-|+|+|.+|+|||||...+.+.
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999999864
No 369
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.71 E-value=0.17 Score=47.42 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=26.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPY 222 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~ 222 (467)
.++|+|.|-||+||||+|..+..- ....=..++-|+...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~--La~~G~rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAA--LAEMGKKVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHH--HHHCCCeEEEEecCC
Confidence 468888999999999999888762 222112345555543
No 370
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=90.69 E-value=0.38 Score=48.50 Aligned_cols=98 Identities=12% Similarity=0.050 Sum_probs=52.9
Q ss_pred HHHHHhcCCCCcEEEEEECCCCChHHHHH-HHHhcCccccCccc-eEEEEEcCCCCC-HHHHH-HHHHHhhCCCC-cccc
Q 041567 171 LLDLLIEGPNQLSVVAILNSIGLDKTAFT-AEAYNSSYVKHYFD-HLAWIPAPYHYD-AYQIL-DIVTMFLLPFS-MLSK 245 (467)
Q Consensus 171 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~-~~~wv~v~~~~~-~~~~~-~il~~l~~~~~-~~~~ 245 (467)
.++.|..-. +-.-++|.|..|+|||+|+ ..+.|. .+-+ .++++-+++... ..++. .+...=..... ....
T Consensus 152 aID~l~Pig-rGQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~a 226 (513)
T 3oaa_A 152 AVDSMIPIG-RGQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVA 226 (513)
T ss_dssp HHHHHSCCB-TTCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEE
T ss_pred eeccccccc-cCCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEE
Confidence 455554332 2456789999999999996 567763 2233 357888887654 33444 43332111100 0000
Q ss_pred CCCCCHH----------HHHHHHHHhhCCceEEEEEecCC
Q 041567 246 IKDKDYE----------MKKINLGEYLMTKWYLIVLDDVW 275 (467)
Q Consensus 246 ~~~~~~~----------~~~~~l~~~L~~kr~LlVlDdv~ 275 (467)
..+.+.. .+.++++. +++.+||++||+.
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dslt 264 (513)
T 3oaa_A 227 TASESAALQYLAPYAGCAMGEYFRD--RGEDALIIYDDLS 264 (513)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEETHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHh--cCCCEEEEecChH
Confidence 0111111 22344443 5899999999984
No 371
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.66 E-value=0.13 Score=49.86 Aligned_cols=23 Identities=22% Similarity=0.172 Sum_probs=21.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|+.|+|||||.+.+..
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 46899999999999999999976
No 372
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.62 E-value=0.13 Score=44.66 Aligned_cols=23 Identities=13% Similarity=-0.142 Sum_probs=19.6
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.--|.|+|.+|+|||||.+.+.+
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999977765
No 373
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.62 E-value=0.2 Score=48.45 Aligned_cols=23 Identities=26% Similarity=0.196 Sum_probs=21.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|+.|.|||||.+.+..
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHT
T ss_pred CCEEEEECCCCccHHHHHHHHHc
Confidence 46899999999999999999986
No 374
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=90.61 E-value=0.11 Score=43.70 Aligned_cols=23 Identities=9% Similarity=0.239 Sum_probs=20.3
Q ss_pred EEEEEECCCCChHHHHHHHHhcC
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
--|+|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45889999999999999999864
No 375
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=90.60 E-value=0.15 Score=52.53 Aligned_cols=24 Identities=17% Similarity=0.029 Sum_probs=21.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|+|+|+.|+|||||++.+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHH
Confidence 357899999999999999999987
No 376
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=90.60 E-value=0.21 Score=45.28 Aligned_cols=41 Identities=15% Similarity=0.092 Sum_probs=27.3
Q ss_pred EEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHH
Q 041567 185 VAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAY 227 (467)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 227 (467)
|+|.|-||+||||+|..+... ....=..++-|+.....+..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~--la~~g~~VlliD~D~~~~l~ 43 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKI--MASDYDKIYAVDGDPDSCLG 43 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHH--HTTTCSCEEEEEECTTSCHH
T ss_pred EEEecCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCcChH
Confidence 667999999999999888763 22221345666665544433
No 377
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.60 E-value=0.11 Score=46.33 Aligned_cols=22 Identities=9% Similarity=0.084 Sum_probs=20.2
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 041567 183 SVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.+|+|.|+.|+||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 378
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.60 E-value=0.12 Score=50.20 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=21.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|+.|.|||||.+.+..
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 46899999999999999999976
No 379
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.59 E-value=0.14 Score=44.00 Aligned_cols=23 Identities=9% Similarity=0.059 Sum_probs=20.2
Q ss_pred EEEEEECCCCChHHHHHHHHhcC
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
--|+|+|.+|+|||||...+.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999998764
No 380
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=90.59 E-value=0.15 Score=52.41 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=21.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|.++|++|.||||+|+.+..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999976
No 381
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.58 E-value=0.14 Score=44.81 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=20.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..-|+|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 45688999999999999999874
No 382
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.55 E-value=0.099 Score=44.69 Aligned_cols=24 Identities=8% Similarity=0.072 Sum_probs=20.7
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.--|.++|.+|+|||||...+.+.
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999999864
No 383
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=90.54 E-value=0.14 Score=43.89 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..-|.|+|.+|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 456889999999999999999864
No 384
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.54 E-value=0.17 Score=44.34 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=21.7
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
...-|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3567899999999999999999765
No 385
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=90.52 E-value=0.17 Score=43.14 Aligned_cols=24 Identities=13% Similarity=0.272 Sum_probs=20.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..-|.|+|.+|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999998865
No 386
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.52 E-value=0.21 Score=47.31 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHh
Q 041567 168 MEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAY 203 (467)
Q Consensus 168 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~ 203 (467)
++++.+.+. -.+++++|..|+|||||.+.+.
T Consensus 156 i~~L~~~l~-----G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLE-----GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTT-----TCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhcc-----CcEEEEECCCCCCHHHHHHHHH
Confidence 456666554 2588999999999999999998
No 387
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.47 E-value=0.23 Score=43.05 Aligned_cols=25 Identities=12% Similarity=0.200 Sum_probs=21.8
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
...-|.|+|.+|+|||||...+.++
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3557899999999999999999875
No 388
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=90.43 E-value=0.084 Score=55.17 Aligned_cols=47 Identities=17% Similarity=0.050 Sum_probs=31.7
Q ss_pred CccccchhHHHHHHHHHhcCCC---------CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 159 RNTVGLDDRMEELLDLLIEGPN---------QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~---------~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
+.++|.+..+..+.-.|..+.. ...-|.++|.+|+|||+||+.+.+.
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 4567777666555444443310 0115789999999999999999873
No 389
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.42 E-value=0.14 Score=43.72 Aligned_cols=24 Identities=8% Similarity=0.039 Sum_probs=20.6
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.--|+|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999999864
No 390
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=90.42 E-value=0.14 Score=44.55 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=21.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..--|+|+|.+|+|||||...+.+.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3457899999999999999998864
No 391
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.41 E-value=0.14 Score=46.53 Aligned_cols=23 Identities=13% Similarity=0.023 Sum_probs=20.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...++|.|++|+||||+|+.+..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 45689999999999999999877
No 392
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.40 E-value=0.15 Score=50.00 Aligned_cols=23 Identities=13% Similarity=0.107 Sum_probs=21.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|+.|.|||||.+.+..
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHc
Confidence 46899999999999999999976
No 393
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.39 E-value=0.15 Score=43.63 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=21.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
...|+|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 457889999999999999999854
No 394
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.38 E-value=0.15 Score=49.53 Aligned_cols=23 Identities=26% Similarity=0.137 Sum_probs=21.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|+.|.|||||.+.+..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHC
Confidence 46899999999999999999976
No 395
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.37 E-value=0.12 Score=45.03 Aligned_cols=24 Identities=17% Similarity=0.022 Sum_probs=20.5
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
...|+++|.+|+|||||...+.+.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999999864
No 396
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=90.37 E-value=0.16 Score=43.67 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=21.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
...-|.|+|.+|+|||||...+.+.
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3457889999999999999999865
No 397
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.35 E-value=0.15 Score=44.55 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..-|+|+|.+|+|||||...+.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999999865
No 398
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=90.35 E-value=0.19 Score=45.21 Aligned_cols=25 Identities=8% Similarity=0.165 Sum_probs=22.1
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
....|+|+|.+|+|||||...+.+.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578899999999999999999875
No 399
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.34 E-value=0.16 Score=49.50 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=21.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|+.|.|||||.+.+..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 46899999999999999999976
No 400
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.34 E-value=0.1 Score=45.88 Aligned_cols=24 Identities=13% Similarity=0.026 Sum_probs=20.7
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
...|+++|.+|+|||||...+.+.
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999999764
No 401
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=90.34 E-value=0.14 Score=44.77 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
...-|+|+|.+|+|||||...+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3557889999999999999999764
No 402
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.34 E-value=0.28 Score=48.71 Aligned_cols=24 Identities=8% Similarity=0.151 Sum_probs=21.7
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+++|+|+.|+|||||.+.+..
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999999876
No 403
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.32 E-value=0.17 Score=44.01 Aligned_cols=25 Identities=12% Similarity=-0.024 Sum_probs=22.4
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
....|+|+|.+|+|||||...+.+.
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999999875
No 404
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=90.27 E-value=0.16 Score=48.19 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=22.2
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
+...|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3568999999999999999999874
No 405
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=90.24 E-value=0.16 Score=43.22 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=20.2
Q ss_pred EEEEEECCCCChHHHHHHHHhcC
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
--|+|+|.+|+|||||...+.++
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999754
No 406
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.21 E-value=0.16 Score=44.55 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=21.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..-|+|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999875
No 407
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=90.16 E-value=0.19 Score=43.46 Aligned_cols=24 Identities=13% Similarity=0.012 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.--|+|+|.+|+|||||...+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999999864
No 408
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.15 E-value=0.16 Score=49.77 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|+.|.|||||.+.+..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCcHHHHHHHHHHc
Confidence 46899999999999999999976
No 409
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.11 E-value=0.15 Score=43.49 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.--|+|+|.+|+|||||...+.+.
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456899999999999999998764
No 410
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.08 E-value=0.17 Score=49.46 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=21.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|+.|.|||||.+.+..
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 46899999999999999999975
No 411
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=90.08 E-value=0.17 Score=45.39 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=19.3
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 041567 184 VVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
-|.|+|-+|+|||+|...+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4778999999999999998764
No 412
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=90.05 E-value=0.33 Score=46.73 Aligned_cols=44 Identities=9% Similarity=-0.006 Sum_probs=29.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCH
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDA 226 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~ 226 (467)
..+++.+.|-||+||||+|..+.. .....=..++-|+.....++
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~--~la~~g~~vllid~D~~~~l 58 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAI--QLAKVRRSVLLLSTDPAHNL 58 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH--HHTTSSSCEEEEECCSSCHH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHH--HHHhCCCcEEEEECCCCCCh
Confidence 367888999999999999988876 22222234566666544433
No 413
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=90.04 E-value=0.15 Score=44.26 Aligned_cols=24 Identities=8% Similarity=0.093 Sum_probs=21.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.--|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999999875
No 414
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=90.03 E-value=0.17 Score=44.30 Aligned_cols=24 Identities=8% Similarity=0.041 Sum_probs=20.6
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999999875
No 415
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=90.01 E-value=0.3 Score=47.26 Aligned_cols=43 Identities=12% Similarity=0.060 Sum_probs=28.8
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcccc--CccceEEEEEcCCCCC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVK--HYFDHLAWIPAPYHYD 225 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--~~F~~~~wv~v~~~~~ 225 (467)
..+++.+.|-||+||||+|..+.. ... ..=..++-|+.....+
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~--~la~~~~g~~vllid~D~~~~ 61 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAV--QLALAQPNEQFLLISTDPAHN 61 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHH--HHHHHCTTSCEEEEECCSSCH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHH--HHHHhcCCCeEEEEECCCCCC
Confidence 468999999999999999988875 222 2222355566554333
No 416
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=89.99 E-value=0.2 Score=45.42 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=22.2
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
....|+|+|.+|+|||||...+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4567899999999999999999875
No 417
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=89.97 E-value=0.15 Score=44.59 Aligned_cols=24 Identities=4% Similarity=0.109 Sum_probs=20.4
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..-|.|+|.+|+|||||.+.+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 456889999999999999977763
No 418
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=89.97 E-value=0.16 Score=44.97 Aligned_cols=24 Identities=13% Similarity=0.045 Sum_probs=20.7
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
...|+|+|.+|+|||||...+.+.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999999865
No 419
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=89.95 E-value=0.27 Score=48.08 Aligned_cols=40 Identities=13% Similarity=0.100 Sum_probs=28.1
Q ss_pred CCcEEEEEEC-CCCChHHHHHHHHhcCccccCccceEEEEEcC
Q 041567 180 NQLSVVAILN-SIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAP 221 (467)
Q Consensus 180 ~~~~vi~I~G-~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~ 221 (467)
.+.++|+|+| -||+||||+|..+.. .....=..++-++..
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~--~La~~g~rVlliD~D 181 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAI--AHANMGKKVFYLNIE 181 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHH--HHHHHTCCEEEEECC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHH--HHHhCCCCEEEEECC
Confidence 4578999986 899999999988876 222222246667754
No 420
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=89.94 E-value=0.17 Score=45.17 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=20.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..-|+|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999999874
No 421
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.92 E-value=0.34 Score=41.74 Aligned_cols=25 Identities=20% Similarity=0.005 Sum_probs=21.7
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
...-|+|+|.+|+|||||...+.+.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3567889999999999999999864
No 422
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=89.90 E-value=0.22 Score=42.85 Aligned_cols=26 Identities=12% Similarity=-0.001 Sum_probs=22.4
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSS 206 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (467)
...-|+|+|.+|+|||||...+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 35678899999999999999998754
No 423
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=89.87 E-value=0.21 Score=50.42 Aligned_cols=45 Identities=16% Similarity=0.134 Sum_probs=29.6
Q ss_pred CCccccchhHHHHHHH----HHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 158 NRNTVGLDDRMEELLD----LLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 158 ~~~~vGr~~~~~~l~~----~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
+-.|-+...+..+.+. .+...+ +.+.|.|.+|.||||++..+...
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHHH
Confidence 3445454544444444 343332 38999999999999999888873
No 424
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=89.86 E-value=0.21 Score=43.38 Aligned_cols=24 Identities=8% Similarity=0.066 Sum_probs=21.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.--|.|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999999875
No 425
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=89.85 E-value=0.17 Score=43.74 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=21.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..-|+|+|.+|+|||||...+.+.
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999999865
No 426
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=89.82 E-value=0.21 Score=44.25 Aligned_cols=24 Identities=13% Similarity=-0.068 Sum_probs=21.4
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
+..+|+|+|++|+||+|+|..+.+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHH
Confidence 467999999999999999988765
No 427
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.77 E-value=0.25 Score=44.76 Aligned_cols=23 Identities=13% Similarity=-0.029 Sum_probs=18.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...|.|-|+.|+||||+++.+.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 428
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=89.76 E-value=0.2 Score=47.54 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=23.3
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 180 NQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 180 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
+....|+|+|.+|+|||||...+...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45789999999999999999999875
No 429
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=89.75 E-value=0.16 Score=44.23 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=21.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.--|+|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999999865
No 430
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=89.74 E-value=0.15 Score=45.13 Aligned_cols=24 Identities=13% Similarity=0.058 Sum_probs=21.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..-|+|+|.+|+|||||...+.+.
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999875
No 431
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=89.73 E-value=0.53 Score=47.51 Aligned_cols=98 Identities=13% Similarity=0.060 Sum_probs=52.0
Q ss_pred HHHHHhcCCCCcEEEEEECCCCChHHHHH-HHHhcCccccCccce-EEEEEcCCCCC-HHHHH-HHHHHhhCCCC-cccc
Q 041567 171 LLDLLIEGPNQLSVVAILNSIGLDKTAFT-AEAYNSSYVKHYFDH-LAWIPAPYHYD-AYQIL-DIVTMFLLPFS-MLSK 245 (467)
Q Consensus 171 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~v~~~~~-~~~~~-~il~~l~~~~~-~~~~ 245 (467)
.++.|..-. +-.-++|.|.+|+|||+|| ..+.+.. .-+. ++++-+++... ..++. .+...=..... ....
T Consensus 152 aID~l~Pig-rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~a 226 (502)
T 2qe7_A 152 AIDSMIPIG-RGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTA 226 (502)
T ss_dssp HHHHSSCCB-TTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEE
T ss_pred ecccccccc-cCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEE
Confidence 445454322 3456789999999999995 5777732 2443 46777777643 33444 44332111100 0000
Q ss_pred CCCCCHH----------HHHHHHHHhhCCceEEEEEecCC
Q 041567 246 IKDKDYE----------MKKINLGEYLMTKWYLIVLDDVW 275 (467)
Q Consensus 246 ~~~~~~~----------~~~~~l~~~L~~kr~LlVlDdv~ 275 (467)
..+.+.. .+.++++. +++.+||++||+.
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLl~~Dslt 264 (502)
T 2qe7_A 227 SASEPAPLLYLAPYAGCAMGEYFMY--KGKHALVVYDDLS 264 (502)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEECHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH--cCCcEEEEEecHH
Confidence 1111111 12233333 5799999999983
No 432
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=89.72 E-value=0.18 Score=43.58 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=21.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..-|+|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999999764
No 433
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=89.72 E-value=0.25 Score=46.01 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=21.4
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
...|+++|.+|+|||||...+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 457899999999999999999874
No 434
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=89.68 E-value=0.098 Score=56.78 Aligned_cols=49 Identities=22% Similarity=0.167 Sum_probs=38.1
Q ss_pred CCCCccccchhHHHHHHHHHhcC-----------CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 156 SKNRNTVGLDDRMEELLDLLIEG-----------PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..-.+++|.++.++.|.+.+... -.....+.++|++|+|||+||+.+++
T Consensus 474 v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~ 533 (806)
T 1ypw_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp CSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHH
T ss_pred ccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHH
Confidence 34456889999999888876531 12345688999999999999999998
No 435
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=89.67 E-value=2.2 Score=41.16 Aligned_cols=25 Identities=12% Similarity=0.213 Sum_probs=22.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.++.|+|+|..|+|||||...+...
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4679999999999999999999874
No 436
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=89.67 E-value=0.15 Score=44.79 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=21.4
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..-|+|+|.+|+|||||...+.+.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 567889999999999999999875
No 437
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=89.67 E-value=0.17 Score=43.91 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=20.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.--|.|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 446889999999999999999864
No 438
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=89.66 E-value=0.92 Score=46.46 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=35.7
Q ss_pred HHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCC
Q 041567 170 ELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYH 223 (467)
Q Consensus 170 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~ 223 (467)
.+++.|..-. +-..++|.|..|+|||+|+..+.+. .+-+.++++-+++.
T Consensus 221 rvID~l~Pig-rGqr~~Ifgg~g~GKT~L~~~ia~~----~~~~v~V~~~iGER 269 (600)
T 3vr4_A 221 RVIDTFFPVT-KGGAAAVPGPFGAGKTVVQHQIAKW----SDVDLVVYVGCGER 269 (600)
T ss_dssp HHHHHHSCCB-TTCEEEEECCTTSCHHHHHHHHHHH----SSCSEEEEEEEEEC
T ss_pred hhhhccCCcc-CCCEEeeecCCCccHHHHHHHHHhc----cCCCEEEEEEeccc
Confidence 4556665432 3467899999999999999999883 23356778877765
No 439
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=89.65 E-value=0.18 Score=44.11 Aligned_cols=25 Identities=8% Similarity=0.204 Sum_probs=21.3
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
...-|+|+|.+|+|||||...+.+.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3567889999999999999999864
No 440
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=89.59 E-value=0.19 Score=50.87 Aligned_cols=23 Identities=9% Similarity=0.098 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+|.++|++|+||||+++.+..
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 56889999999999999999986
No 441
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=89.57 E-value=0.17 Score=44.04 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=20.4
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..-|.|+|.+|+|||||...+.++
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 446889999999999999999865
No 442
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=89.57 E-value=0.18 Score=43.59 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..-|+|+|.+|+|||||...+.+.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356889999999999999999865
No 443
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=89.56 E-value=0.29 Score=49.50 Aligned_cols=86 Identities=14% Similarity=0.021 Sum_probs=48.4
Q ss_pred cEEEEEECCCCChHHHHH-HHHhcCccccCccc-eEEEEEcCCCCCHHHHHHHHHHhhCC------------CCccccCC
Q 041567 182 LSVVAILNSIGLDKTAFT-AEAYNSSYVKHYFD-HLAWIPAPYHYDAYQILDIVTMFLLP------------FSMLSKIK 247 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~il~~l~~~------------~~~~~~~~ 247 (467)
-.-++|.|.+|+|||+|| ..+.+.. .-+ .++++-+++....- .++.+.+... .+.|....
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev--~~~~~~~~~~g~m~rtvvV~atad~p~~~r 236 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSV--AQVVTNFQERGAMEYTIVVAETADSPATLQ 236 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHH--HHHHHHTGGGTGGGSEEEEEECTTSCGGGT
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHH--HHHHHHHHhcCccccceEEEECCCCCHHHH
Confidence 456789999999999995 5777742 234 35677777654322 2333333221 11111000
Q ss_pred C---CCHHHHHHHHHHhhCCceEEEEEecCC
Q 041567 248 D---KDYEMKKINLGEYLMTKWYLIVLDDVW 275 (467)
Q Consensus 248 ~---~~~~~~~~~l~~~L~~kr~LlVlDdv~ 275 (467)
. ..--...++++. +++.+||++||+.
T Consensus 237 ~~a~~~a~tiAEyfrd--~G~dVLli~Dslt 265 (507)
T 1fx0_A 237 YLAPYTGAALAEYFMY--RERHTLIIYDDLS 265 (507)
T ss_dssp THHHHHHHHHHHHHHH--TTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHH--cCCcEEEEEecHH
Confidence 0 011223444555 5899999999984
No 444
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=89.55 E-value=0.45 Score=46.06 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=20.8
Q ss_pred CCCcEEEEEECCCCChHHHHHHHHhc
Q 041567 179 PNQLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 179 ~~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.....++.+.|-||+||||+|..+..
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~ 48 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGV 48 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHH
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHH
Confidence 34466777889999999999888765
No 445
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.55 E-value=0.13 Score=49.95 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|+.|.|||||.+.+..
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 46899999999999999999975
No 446
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=89.54 E-value=0.29 Score=43.49 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=23.9
Q ss_pred EEEEEECCCCChHHHHHHHHhcCccccCccce
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNSSYVKHYFDH 214 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~ 214 (467)
+.|+|-|.-|+||||+++.+.+ .....++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~--~L~~~~~v 32 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYH--RLVKDYDV 32 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH--HHTTTSCE
T ss_pred CEEEEECCCCCcHHHHHHHHHH--HHHCCCCE
Confidence 4688999999999999999988 44444543
No 447
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=89.54 E-value=0.16 Score=44.27 Aligned_cols=24 Identities=8% Similarity=-0.078 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..-|+|+|.+|+|||||...+...
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999764
No 448
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.52 E-value=0.15 Score=44.19 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=20.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.--|+|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 456889999999999999998864
No 449
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=89.49 E-value=0.14 Score=48.65 Aligned_cols=21 Identities=14% Similarity=0.366 Sum_probs=18.7
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 041567 184 VVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-|+|+|.+|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 349999999999999999875
No 450
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.49 E-value=0.15 Score=44.92 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=21.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
...-|+|+|.+|+|||||...+.+.
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3567889999999999999998764
No 451
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=89.44 E-value=0.17 Score=44.36 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=21.0
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..--|+|+|.+|+|||||...+.+.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3556889999999999999999864
No 452
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.40 E-value=0.32 Score=44.33 Aligned_cols=37 Identities=14% Similarity=0.120 Sum_probs=26.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEE
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIP 219 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 219 (467)
...|.|.|..|+||||+++.+...-. ...++.+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeec
Confidence 46899999999999999999987321 23455344443
No 453
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.40 E-value=0.16 Score=44.15 Aligned_cols=24 Identities=13% Similarity=0.155 Sum_probs=20.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..-|+|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 456889999999999999999764
No 454
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=89.40 E-value=0.18 Score=44.75 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=21.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+|.|.|+.|+||||+++.+..
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~ 28 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAE 28 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHH
Confidence 35899999999999999999988
No 455
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=89.35 E-value=0.21 Score=46.42 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=21.4
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999874
No 456
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=89.32 E-value=0.18 Score=44.82 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=20.6
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.--|+|+|.+|+|||||...+.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999999864
No 457
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=89.31 E-value=0.83 Score=45.98 Aligned_cols=87 Identities=20% Similarity=0.165 Sum_probs=53.1
Q ss_pred CChHHHHHHHHHHHHHhHHHHHHHHhHhhhhccccCCCcccchhhhHHHHHHHHHHHHHHHHHhhhhchhhHHhhhhccc
Q 041567 66 DNPDLATVMDEINCFTCEFEKVIDTFINSITQQKSQSSCRKDICDALQGLQSRITEINQRVQQLKHIDSEIIDEFRRAEV 145 (467)
Q Consensus 66 ~~~~v~~Wl~~l~~~ayd~ed~ld~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~l~~~l~~i~~~~~~~~~~~~~~~~ 145 (467)
-...+..|..++-++.-.+|-.+|--. ...... . ..+..++..+.+.++++. ....+
T Consensus 161 ~~~~~~~~r~~l~~~~a~iEa~iDf~e-d~~~~~-~-----------~~~~~~i~~l~~~l~~~~-------~~~~~--- 217 (462)
T 3geh_A 161 LAHPIRQLRANCLDILAEIEARIDFEE-DLPPLD-D-----------EAIISDIENIAAEISQLL-------ATKDK--- 217 (462)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTSSS-SSCCCC-T-----------TTHHHHHHHHHHHHHHHT-------TTHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccc-cCChhh-H-----------HHHHHHHHHHHHHHHHHH-------HHhhh---
Confidence 445688899998888888887776422 111100 0 035566666666666654 21100
Q ss_pred cccccCCCCCCCCCccccchhHHHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 146 ESSYFLASSSSKNRNTVGLDDRMEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 146 ~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
. +.+.. +. .|+|+|.+|+|||||...+...
T Consensus 218 -----------------------~---~~~r~---~~-kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 218 -----------------------G---ELLRT---GL-KVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp -----------------------H---HHHHH---CE-EEEEEECTTSSHHHHHHHHHHH
T ss_pred -----------------------h---hhhcC---CC-EEEEEcCCCCCHHHHHHHHhCC
Confidence 0 11111 23 4889999999999999998764
No 458
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.28 E-value=0.17 Score=43.36 Aligned_cols=25 Identities=20% Similarity=0.048 Sum_probs=21.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
....|+|+|.+|+|||||...+.+.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999998854
No 459
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.25 E-value=0.23 Score=43.75 Aligned_cols=24 Identities=8% Similarity=0.268 Sum_probs=21.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..-|+|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457889999999999999998864
No 460
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=89.20 E-value=0.34 Score=43.02 Aligned_cols=44 Identities=14% Similarity=0.013 Sum_probs=29.1
Q ss_pred EEEE-ECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH
Q 041567 184 VVAI-LNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL 230 (467)
Q Consensus 184 vi~I-~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 230 (467)
+|+| -+-||+||||+|..+.. .....= .++-|+.....+....+
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~--~la~~g-~VlliD~D~q~~~~~~~ 46 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSA--YLALQG-ETLLIDGDPNRSATGWG 46 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH--HHHTTS-CEEEEEECTTCHHHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHH--HHHhcC-CEEEEECCCCCCHHHHh
Confidence 5666 47899999999988876 333322 57777776655444333
No 461
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=89.18 E-value=0.31 Score=46.08 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 168 MEELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 168 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
++++...+. -.+++|+|++|+|||||.+.+...
T Consensus 160 v~~lf~~l~-----geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 160 IEELKEYLK-----GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHHHHHHHS-----SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHHHHHHhc-----CCeEEEECCCCCcHHHHHHHhccc
Confidence 456666554 248899999999999999999873
No 462
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=89.17 E-value=0.4 Score=47.94 Aligned_cols=44 Identities=23% Similarity=0.290 Sum_probs=33.8
Q ss_pred ccchhHHHHHHHHHhcC---------CCCcEEEEEECCCCChHHHHHHHHhcC
Q 041567 162 VGLDDRMEELLDLLIEG---------PNQLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 162 vGr~~~~~~l~~~L~~~---------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.|.++-++.|.+.+... ......|+|+|.+|+|||||.+.+...
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence 46677778887777521 123468999999999999999999875
No 463
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=89.16 E-value=1.5 Score=47.95 Aligned_cols=23 Identities=13% Similarity=0.057 Sum_probs=20.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHh
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAY 203 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~ 203 (467)
...+++|+|+.|.|||||.+.+.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHH
Confidence 45799999999999999999875
No 464
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=89.10 E-value=0.25 Score=44.54 Aligned_cols=24 Identities=13% Similarity=-0.053 Sum_probs=22.1
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
....|.|.|..|+||||+++.+.+
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999987
No 465
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.10 E-value=0.15 Score=49.64 Aligned_cols=103 Identities=14% Similarity=0.049 Sum_probs=49.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCccccCCCCCHHHHHHHHHHh
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLSKIKDKDYEMKKINLGEY 261 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (467)
..+++|+|..|.|||||++.+..- +.. -...+.+.-.......... ..+..-..................++..
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~--~~~-~~g~I~ie~~~e~~~~~~~---~~v~~v~~q~~~~~~~~~~t~~~~i~~~ 248 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQE--IPF-DQRLITIEDVPELFLPDHP---NHVHLFYPSEAKEEENAPVTAATLLRSC 248 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTT--SCT-TSCEEEEESSSCCCCTTCS---SEEEEECC----------CCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc--CCC-CceEEEECCccccCccccC---CEEEEeecCccccccccccCHHHHHHHH
Confidence 358999999999999999999873 221 2344444422111100000 0000000000000000011234556666
Q ss_pred hCCceEEEEEecCCCcchHHHHHHhhcCCC
Q 041567 262 LMTKWYLIVLDDVWSTNVLDVVREILLDNQ 291 (467)
Q Consensus 262 L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~ 291 (467)
+...+-.+++|.+...+.++. ...++.+.
T Consensus 249 l~~~pd~~l~~e~r~~~~~~~-l~~l~~g~ 277 (361)
T 2gza_A 249 LRMKPTRILLAELRGGEAYDF-INVAASGH 277 (361)
T ss_dssp TTSCCSEEEESCCCSTHHHHH-HHHHHTTC
T ss_pred HhcCCCEEEEcCchHHHHHHH-HHHHhcCC
Confidence 666656778888876665554 34455443
No 466
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=89.09 E-value=1.3 Score=42.49 Aligned_cols=104 Identities=8% Similarity=-0.057 Sum_probs=62.4
Q ss_pred HHHHHHhcCCCCcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCccccCCCC
Q 041567 170 ELLDLLIEGPNQLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLSKIKDK 249 (467)
Q Consensus 170 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~~~~~~ 249 (467)
++.+.|. + .-.++..++|..|.||++.+..+.+.. ....|+....+.+....+
T Consensus 8 ~l~~~l~-~-~~~~~yl~~G~e~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~------------------------ 60 (343)
T 1jr3_D 8 QLRAQLN-E-GLRAAYLLLGNDPLLLQESQDAVRQVA-AAQGFEEHHTFSIDPNTD------------------------ 60 (343)
T ss_dssp THHHHHH-H-CCCSEEEEEESCHHHHHHHHHHHHHHH-HHHTCCEEEEEECCTTCC------------------------
T ss_pred HHHHHHh-c-CCCcEEEEECCcHHHHHHHHHHHHHHH-HhCCCCeeEEEEecCCCC------------------------
Confidence 3444454 2 246789999999999999998887721 112343222222332223
Q ss_pred CHHHHHHHHHHh-hCCceEEEEEecCCC---cchHHHHHHhhcCCCCCcEEEEecCc
Q 041567 250 DYEMKKINLGEY-LMTKWYLIVLDDVWS---TNVLDVVREILLDNQNGSRVLITLTR 302 (467)
Q Consensus 250 ~~~~~~~~l~~~-L~~kr~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~iivT~TR 302 (467)
..++.+.+... +-+++-++|+|++.. .+.++.+...+.....++.+|++ +.
T Consensus 61 -~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~-~~ 115 (343)
T 1jr3_D 61 -WNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR-GN 115 (343)
T ss_dssp -HHHHHHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEE-ES
T ss_pred -HHHHHHHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEE-cC
Confidence 33333333221 335567888898854 36778888887766667877776 54
No 467
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=89.09 E-value=0.5 Score=47.76 Aligned_cols=59 Identities=14% Similarity=0.064 Sum_probs=36.2
Q ss_pred HHHHHHhcCCCCcEEEEEECCCCChHHHHH-HHHhcCccccCccce-EEEEEcCCCCC-HHHHH-HHH
Q 041567 170 ELLDLLIEGPNQLSVVAILNSIGLDKTAFT-AEAYNSSYVKHYFDH-LAWIPAPYHYD-AYQIL-DIV 233 (467)
Q Consensus 170 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~v~~~~~-~~~~~-~il 233 (467)
..++.|..-. +-.-++|.|.+|+|||+|| ..+.+.. .-+. ++++-+++... ..++. .+.
T Consensus 164 raID~l~Pig-rGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~ 226 (515)
T 2r9v_A 164 KAIDSMIPIG-RGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLR 226 (515)
T ss_dssp HHHHHHSCEE-TTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHH
T ss_pred cccccccccc-cCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHH
Confidence 3445554322 2456889999999999995 5777732 3453 46777776643 33444 443
No 468
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=89.05 E-value=0.18 Score=48.83 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=22.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
-.+++|+|..|+|||||.+.+.+.
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 569999999999999999999983
No 469
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.00 E-value=0.37 Score=43.13 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=20.9
Q ss_pred EEEEEECCCCChHHHHHHHHhcC
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..|.|-|..|+||||+++.+.+.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999873
No 470
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=88.99 E-value=0.22 Score=48.32 Aligned_cols=23 Identities=9% Similarity=0.169 Sum_probs=21.0
Q ss_pred EEEEEECCCCChHHHHHHHHhcC
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.+++|+|.+|+|||||.+.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 58999999999999999999873
No 471
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=88.98 E-value=0.26 Score=43.79 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=20.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.--|.|+|.+|+|||||...+.+.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456789999999999999999875
No 472
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=88.95 E-value=0.22 Score=45.10 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=30.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL 230 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 230 (467)
.-.++.|.|.+|+|||+||.+++.+ .....-..+++++... +...+.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~-~~~~~~~~v~~~s~E~--~~~~~~ 75 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK-GAEEYGEPGVFVTLEE--RARDLR 75 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH-HHHHHCCCEEEEESSS--CHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH-HHHhcCCCceeecccC--CHHHHH
Confidence 3568999999999999999887642 1222223466666543 344444
No 473
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=88.94 E-value=0.14 Score=43.99 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=10.4
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..-|.|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999988764
No 474
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.93 E-value=0.19 Score=49.93 Aligned_cols=21 Identities=19% Similarity=0.458 Sum_probs=19.5
Q ss_pred EEEECCCCChHHHHHHHHhcC
Q 041567 185 VAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~~ 205 (467)
++|+|..|+|||||.+.++.-
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 999999999999999999763
No 475
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=88.87 E-value=0.19 Score=44.17 Aligned_cols=24 Identities=13% Similarity=0.242 Sum_probs=21.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..-|+|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999999864
No 476
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=88.87 E-value=0.37 Score=41.85 Aligned_cols=44 Identities=9% Similarity=0.142 Sum_probs=27.2
Q ss_pred EEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHH-HHHHH
Q 041567 185 VAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQIL-DIVTM 235 (467)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~-~il~~ 235 (467)
+.|+|.+|+||||+|.++... . ..++++.-...++. +.. .|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~---~---~~~~yiaT~~~~d~-e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD---A---PQVLYIATSQILDD-EMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS---C---SSEEEEECCCC-------CHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc---C---CCeEEEecCCCCCH-HHHHHHHHH
Confidence 679999999999999999873 1 23556655554432 334 54444
No 477
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.86 E-value=0.2 Score=44.18 Aligned_cols=24 Identities=8% Similarity=-0.000 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..-|+|+|.+|+|||||...+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999999874
No 478
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=88.85 E-value=0.17 Score=43.89 Aligned_cols=25 Identities=20% Similarity=-0.015 Sum_probs=21.5
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSS 206 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (467)
..-|+|+|.+|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999998753
No 479
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=88.84 E-value=0.17 Score=43.41 Aligned_cols=24 Identities=17% Similarity=-0.032 Sum_probs=21.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..-|.|+|.+|+|||||...+.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999864
No 480
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=88.82 E-value=0.31 Score=42.06 Aligned_cols=25 Identities=16% Similarity=-0.040 Sum_probs=21.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
...-|+|+|.+|+|||||...+...
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 4567899999999999999999754
No 481
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.77 E-value=0.2 Score=43.47 Aligned_cols=24 Identities=13% Similarity=0.129 Sum_probs=21.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..-|+|+|.+|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999999875
No 482
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=88.76 E-value=0.43 Score=45.65 Aligned_cols=44 Identities=16% Similarity=-0.035 Sum_probs=27.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHH
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAY 227 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 227 (467)
..++...|-||+||||+|..+... ....=..++-|+.....+..
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~--lA~~G~rVLlvD~D~~~~l~ 57 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALW--MARSGKKTLVISTDPAHSLS 57 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEECCSSCCHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHH--HHHCCCcEEEEeCCCCcCHH
Confidence 467777899999999999888762 22222234455554433333
No 483
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=88.69 E-value=0.22 Score=49.06 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=21.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
-.+++|+|+.|+|||||.+.+..
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 56899999999999999999976
No 484
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=88.68 E-value=0.33 Score=50.02 Aligned_cols=24 Identities=13% Similarity=-0.126 Sum_probs=21.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|.+.|++|+||||+|+.+..
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~ 394 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILAT 394 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 485
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=88.59 E-value=0.21 Score=43.89 Aligned_cols=25 Identities=12% Similarity=0.120 Sum_probs=21.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
...-|.|+|.+|+|||||...+.+.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhhC
Confidence 3567899999999999999999764
No 486
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=88.52 E-value=0.21 Score=44.13 Aligned_cols=24 Identities=8% Similarity=-0.011 Sum_probs=20.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.--|+|+|.+|+|||||...+.+.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998864
No 487
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=88.43 E-value=0.22 Score=43.69 Aligned_cols=24 Identities=13% Similarity=0.012 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
..-|+|+|.+|+|||||...+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999999874
No 488
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.26 E-value=0.23 Score=49.32 Aligned_cols=21 Identities=14% Similarity=0.390 Sum_probs=19.3
Q ss_pred EEEECCCCChHHHHHHHHhcC
Q 041567 185 VAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~~ 205 (467)
|+|+|.+|+|||||.+.++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 599999999999999999874
No 489
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=88.24 E-value=0.36 Score=50.10 Aligned_cols=24 Identities=13% Similarity=-0.016 Sum_probs=21.8
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|.|.|++|+||||+|+.+..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~ 418 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQV 418 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 490
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.23 E-value=0.33 Score=40.65 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=19.7
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
..+.+|+|+.|.||||+...++-
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 36889999999999999888753
No 491
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=88.19 E-value=0.28 Score=46.45 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=22.0
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
+...|+|+|.+|+|||||...+...
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999999875
No 492
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=88.11 E-value=0.29 Score=44.98 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=21.7
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
....|+|+|.+|+|||||...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3567899999999999999999764
No 493
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.09 E-value=0.29 Score=50.39 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=21.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
.-.+++|+|+.|+|||||.+.+..
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 457999999999999999999986
No 494
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=88.04 E-value=0.18 Score=50.89 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=21.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
.-.+++|+|..|+|||||++.+..-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 3568999999999999999999773
No 495
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=88.03 E-value=0.17 Score=45.05 Aligned_cols=26 Identities=12% Similarity=0.015 Sum_probs=22.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSS 206 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (467)
....|+|+|..|+|||||...+....
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 35678999999999999999998754
No 496
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=87.98 E-value=0.28 Score=51.30 Aligned_cols=24 Identities=17% Similarity=0.068 Sum_probs=21.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYN 204 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~ 204 (467)
...+|.|.|++|+||||+|+.+..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~ 74 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEE 74 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH
Confidence 467899999999999999999987
No 497
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=87.92 E-value=0.32 Score=44.86 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=21.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
...|+++|.+|+|||||...+...
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 456899999999999999999874
No 498
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=87.89 E-value=0.59 Score=54.32 Aligned_cols=89 Identities=17% Similarity=0.021 Sum_probs=58.1
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCccccCccceEEEEEcCCCCCHHHHHHHHHHhhCCCCccccCCCCCHHHHHHHHHH
Q 041567 181 QLSVVAILNSIGLDKTAFTAEAYNSSYVKHYFDHLAWIPAPYHYDAYQILDIVTMFLLPFSMLSKIKDKDYEMKKINLGE 260 (467)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~ 260 (467)
+-++|-|+|+.|+||||||.++.. +.++.=...+|+++.+.++.. .++.++-..+.---.....-++....+..
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~~----~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~ 1503 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPI----YARKLGVDIDNLLCSQPDTGEQALEICDA 1503 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHH----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCHH----HHHHcCCCHHHeEEeCCCcHHHHHHHHHH
Confidence 468999999999999999999987 455555668899887776644 24555543221101122233555555555
Q ss_pred hhC-CceEEEEEecCC
Q 041567 261 YLM-TKWYLIVLDDVW 275 (467)
Q Consensus 261 ~L~-~kr~LlVlDdv~ 275 (467)
.++ +..-+||+|-|-
T Consensus 1504 ~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1504 LARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHTCCSEEEESCST
T ss_pred HHHcCCCCEEEEccHH
Confidence 554 456699999883
No 499
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=87.83 E-value=0.26 Score=45.51 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=20.7
Q ss_pred EEEEEECCCCChHHHHHHHHhcC
Q 041567 183 SVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
+.|+++|.+|+|||||...+...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999875
No 500
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=87.82 E-value=0.26 Score=50.69 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.5
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 041567 182 LSVVAILNSIGLDKTAFTAEAYNS 205 (467)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (467)
-.+++|+|..|+|||||++.++.-
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999873
Done!