BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041569
         (285 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2FTW|A Chain A, Crystal Structure Of Dihydropyrimidinase From
           Dictyostelium Discoideum
          Length = 521

 Score = 28.5 bits (62), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 25/129 (19%), Positives = 56/129 (43%), Gaps = 13/129 (10%)

Query: 66  YVCPLDVEGSSPLFDKWIELATENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVG 125
           +V P   +     +D+W + A E         V  D + + A+  T +S ++   ++++ 
Sbjct: 100 FVIPTRGQSLLEAYDQWKKWADEK--------VNCDYSLHVAI--TWWSEQVSREMEILV 149

Query: 126 CKLELPSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISSNKLE 185
            +  + SF C    K   + F + D+E++H+  +C  L  ++  H  +   +     K+ 
Sbjct: 150 KERGVNSFXCFMAYK---NSFMVTDQEMYHIFKRCKELGAIAQVHAENGDMVFEGQKKML 206

Query: 186 HLLISSCYG 194
            + I+   G
Sbjct: 207 EMGITGPEG 215


>pdb|1UGN|A Chain A, Crystal Structure Of Lir1.02, One Of The Alleles Of Lir1
          Length = 198

 Score = 27.7 bits (60), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%)

Query: 213 NPIPIISTNALCPWNVTLDCDSNLDCDWFLSLKE 246
            P P++++      NVTL CDS +  D F+  KE
Sbjct: 107 QPSPVVNSGG----NVTLQCDSQVAFDGFILCKE 136


>pdb|3D2U|D Chain D, Structure Of Ul18, A Peptide-binding Viral Mhc Mimic,
           Bound To A Host Inhibitory Receptor
 pdb|3D2U|H Chain H, Structure Of Ul18, A Peptide-binding Viral Mhc Mimic,
           Bound To A Host Inhibitory Receptor
          Length = 198

 Score = 27.7 bits (60), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%)

Query: 213 NPIPIISTNALCPWNVTLDCDSNLDCDWFLSLKE 246
            P P++++      NVTL CDS +  D F+  KE
Sbjct: 107 QPSPVVNSGG----NVTLQCDSQVAFDGFILCKE 136


>pdb|1G0X|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Lir-1
           (Ilt2)
 pdb|1P7Q|D Chain D, Crystal Structure Of Hla-A2 Bound To Lir-1, A Host And
           Viral Mhc Receptor
 pdb|1UFU|A Chain A, Crystal Structure Of Ligand Binding Domain Of
           Immunoglobulin-Like Transcript 2 (Ilt2; Lir-1)
          Length = 197

 Score = 27.7 bits (60), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%)

Query: 213 NPIPIISTNALCPWNVTLDCDSNLDCDWFLSLKE 246
            P P++++      NVTL CDS +  D F+  KE
Sbjct: 106 QPSPVVNSGG----NVTLQCDSQVAFDGFILCKE 135


>pdb|4FBW|A Chain A, Crystal Structure Of An Unfused Mre11-Nbs1 Complex With
           Two Manganese Ions Per Active Site
 pdb|4FBW|B Chain B, Crystal Structure Of An Unfused Mre11-Nbs1 Complex With
           Two Manganese Ions Per Active Site
          Length = 417

 Score = 27.3 bits (59), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 22/104 (21%), Positives = 49/104 (47%), Gaps = 8/104 (7%)

Query: 7   QISDLPPSIIH--HIMTYLSAKEVTRTSILSTSWNQFQNSFPILDFDLMNFIVRIEIKLR 64
           ++S +PP + +   ++TYL +K     +  +  W + Q + P+++ +     +   I+LR
Sbjct: 317 EVSSIPPMVENKKEVLTYLISKVEEAITEANAQWYEAQGTVPVVENEKPPLPL---IRLR 373

Query: 65  I-YVCPLDVEGSSPLFDKWIELATENGLEVLDF-MVIADENTYY 106
           + Y      E      ++++     N  +V+ F +   DEN Y+
Sbjct: 374 VDYTGGYQTENPQRFSNRFVGRVA-NATDVVQFYLKKVDENLYF 416


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,154,485
Number of Sequences: 62578
Number of extensions: 313199
Number of successful extensions: 919
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 919
Number of HSP's gapped (non-prelim): 6
length of query: 285
length of database: 14,973,337
effective HSP length: 98
effective length of query: 187
effective length of database: 8,840,693
effective search space: 1653209591
effective search space used: 1653209591
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)