Query 041569
Match_columns 285
No_of_seqs 150 out of 1761
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 08:30:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041569.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041569hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.8 8E-21 1.7E-25 156.3 -2.8 200 8-214 98-324 (419)
2 KOG4341 F-box protein containi 99.3 2.4E-13 5.3E-18 117.0 -1.4 162 10-193 74-253 (483)
3 PF12937 F-box-like: F-box-lik 98.9 7.5E-10 1.6E-14 67.9 2.8 35 8-42 1-35 (47)
4 KOG3207 Beta-tubulin folding c 98.7 8.7E-09 1.9E-13 89.8 2.9 101 115-215 171-283 (505)
5 KOG2120 SCF ubiquitin ligase, 98.5 1.1E-08 2.5E-13 85.2 -0.7 129 85-214 230-374 (419)
6 PF00646 F-box: F-box domain; 98.5 3.3E-08 7.2E-13 60.8 0.6 37 8-44 3-39 (48)
7 smart00256 FBOX A Receptor for 98.4 2.4E-07 5.2E-12 54.7 2.3 33 11-43 1-33 (41)
8 PLN00113 leucine-rich repeat r 98.3 8.2E-07 1.8E-11 88.8 6.8 122 89-214 93-223 (968)
9 PLN03210 Resistant to P. syrin 98.2 3.1E-06 6.7E-11 85.9 6.7 56 159-214 679-736 (1153)
10 PLN00113 leucine-rich repeat r 98.1 2.7E-06 5.8E-11 85.2 5.2 62 109-171 157-222 (968)
11 cd00116 LRR_RI Leucine-rich re 98.1 1.7E-06 3.7E-11 75.2 3.2 171 89-266 81-292 (319)
12 KOG4194 Membrane glycoprotein 98.1 2.6E-07 5.6E-12 83.7 -2.8 145 113-266 266-430 (873)
13 KOG3207 Beta-tubulin folding c 98.1 5.3E-07 1.2E-11 78.9 -0.9 163 115-278 120-327 (505)
14 KOG4194 Membrane glycoprotein 98.0 4.2E-06 9.1E-11 76.1 3.8 77 112-193 98-184 (873)
15 cd00116 LRR_RI Leucine-rich re 98.0 2.6E-06 5.5E-11 74.1 1.4 167 89-262 108-317 (319)
16 KOG4341 F-box protein containi 97.9 2.1E-06 4.5E-11 74.9 0.3 147 133-285 291-460 (483)
17 KOG1947 Leucine rich repeat pr 97.8 1.1E-06 2.5E-11 80.6 -4.1 124 89-213 188-331 (482)
18 PLN03210 Resistant to P. syrin 97.8 3.4E-05 7.3E-10 78.5 5.5 74 160-233 777-858 (1153)
19 KOG3665 ZYG-1-like serine/thre 97.7 1.3E-05 2.9E-10 76.4 1.2 136 116-258 122-281 (699)
20 PRK15387 E3 ubiquitin-protein 97.6 0.00019 4.1E-09 69.2 7.2 112 89-213 201-312 (788)
21 PF14580 LRR_9: Leucine-rich r 97.6 9.9E-06 2.1E-10 64.0 -1.2 79 114-193 40-124 (175)
22 PRK15370 E3 ubiquitin-protein 97.3 0.0003 6.6E-09 67.9 5.6 54 89-148 178-232 (754)
23 PRK15387 E3 ubiquitin-protein 97.3 0.00025 5.5E-09 68.4 4.9 34 115-148 241-274 (788)
24 KOG3665 ZYG-1-like serine/thre 97.3 9.3E-05 2E-09 70.8 1.7 132 79-215 112-262 (699)
25 PRK15370 E3 ubiquitin-protein 97.3 0.0005 1.1E-08 66.5 5.9 169 90-281 200-374 (754)
26 PF14580 LRR_9: Leucine-rich r 97.2 6.2E-05 1.3E-09 59.5 -0.2 96 114-214 17-124 (175)
27 PF13855 LRR_8: Leucine rich r 97.2 0.00017 3.7E-09 46.5 1.2 56 116-172 1-60 (61)
28 KOG2982 Uncharacterized conser 97.1 0.00025 5.4E-09 59.8 1.8 169 89-265 71-262 (418)
29 KOG1947 Leucine rich repeat pr 96.9 0.00012 2.6E-09 67.2 -2.0 104 89-192 214-331 (482)
30 KOG0444 Cytoskeletal regulator 96.7 2.5E-05 5.5E-10 71.8 -7.3 109 104-214 161-279 (1255)
31 KOG0444 Cytoskeletal regulator 96.6 0.00016 3.4E-09 66.8 -3.4 127 106-235 139-282 (1255)
32 PF07723 LRR_2: Leucine Rich R 96.6 0.0033 7.1E-08 32.8 2.9 25 137-161 1-26 (26)
33 KOG1909 Ran GTPase-activating 96.5 0.0009 1.9E-08 57.5 1.0 189 76-266 43-284 (382)
34 KOG2982 Uncharacterized conser 96.4 0.0029 6.2E-08 53.6 3.1 96 118-213 47-156 (418)
35 PF13855 LRR_8: Leucine rich r 96.0 0.0059 1.3E-07 39.1 2.7 55 90-148 2-61 (61)
36 KOG3864 Uncharacterized conser 96.0 0.0013 2.8E-08 52.4 -0.8 46 134-179 123-169 (221)
37 KOG1259 Nischarin, modulator o 95.9 0.0016 3.5E-08 55.1 -0.7 40 88-127 181-225 (490)
38 PLN03215 ascorbic acid mannose 95.7 0.0066 1.4E-07 53.5 2.3 37 7-43 3-40 (373)
39 PRK15386 type III secretion pr 95.7 0.018 3.9E-07 51.6 5.0 89 117-214 73-167 (426)
40 KOG0281 Beta-TrCP (transducin 95.5 0.0046 9.9E-08 53.0 0.5 37 5-41 72-112 (499)
41 PF12799 LRR_4: Leucine Rich r 95.4 0.011 2.4E-07 35.2 1.8 35 136-172 1-35 (44)
42 KOG0618 Serine/threonine phosp 95.3 0.0037 8.1E-08 60.2 -0.6 96 115-214 382-487 (1081)
43 PF12799 LRR_4: Leucine Rich r 95.3 0.017 3.6E-07 34.4 2.4 34 116-149 1-37 (44)
44 KOG1909 Ran GTPase-activating 95.2 0.014 3.1E-07 50.4 2.6 104 112-215 181-310 (382)
45 KOG2739 Leucine-rich acidic nu 95.0 0.0058 1.2E-07 50.6 -0.3 64 153-216 35-104 (260)
46 PRK15386 type III secretion pr 94.7 0.074 1.6E-06 47.7 5.7 71 135-213 51-122 (426)
47 KOG1644 U2-associated snRNP A' 94.6 0.037 8E-07 44.4 3.2 57 115-172 63-124 (233)
48 KOG4658 Apoptotic ATPase [Sign 94.4 0.053 1.1E-06 53.7 4.7 95 115-210 522-622 (889)
49 KOG3864 Uncharacterized conser 94.4 0.004 8.6E-08 49.7 -2.5 75 138-213 103-186 (221)
50 KOG2739 Leucine-rich acidic nu 94.4 0.004 8.6E-08 51.6 -2.7 99 115-213 42-153 (260)
51 KOG1644 U2-associated snRNP A' 94.0 0.14 3E-06 41.2 5.3 96 116-214 42-151 (233)
52 KOG2997 F-box protein FBX9 [Ge 93.8 0.023 5.1E-07 48.3 0.7 36 6-41 105-145 (366)
53 smart00367 LRR_CC Leucine-rich 93.7 0.032 7E-07 28.9 1.0 18 160-177 1-18 (26)
54 KOG0617 Ras suppressor protein 93.3 0.0034 7.3E-08 49.0 -4.7 112 104-216 67-186 (264)
55 smart00367 LRR_CC Leucine-rich 93.2 0.067 1.5E-06 27.7 1.7 24 135-158 1-25 (26)
56 KOG0618 Serine/threonine phosp 92.9 0.0079 1.7E-07 58.1 -3.7 134 116-262 359-510 (1081)
57 KOG0617 Ras suppressor protein 92.2 0.013 2.7E-07 45.9 -2.8 56 112-169 29-87 (264)
58 COG4886 Leucine-rich repeat (L 91.9 0.061 1.3E-06 48.3 0.7 95 116-213 116-219 (394)
59 PLN03150 hypothetical protein; 91.8 0.14 3E-06 49.1 3.1 75 118-193 420-501 (623)
60 KOG1859 Leucine-rich repeat pr 91.2 0.015 3.3E-07 55.0 -3.9 39 89-129 84-122 (1096)
61 KOG1259 Nischarin, modulator o 90.3 0.73 1.6E-05 39.5 5.5 28 251-278 306-333 (490)
62 KOG0274 Cdc4 and related F-box 90.2 0.13 2.8E-06 48.1 1.2 39 3-41 103-141 (537)
63 KOG2123 Uncharacterized conser 89.5 0.024 5.1E-07 47.8 -3.8 12 247-258 112-123 (388)
64 PF13516 LRR_6: Leucine Rich r 89.3 0.21 4.6E-06 25.2 1.1 22 135-156 1-22 (24)
65 KOG2123 Uncharacterized conser 88.2 0.082 1.8E-06 44.6 -1.4 58 114-172 39-99 (388)
66 KOG1859 Leucine-rich repeat pr 88.1 0.03 6.4E-07 53.1 -4.5 151 116-279 84-281 (1096)
67 PLN03150 hypothetical protein; 86.9 0.73 1.6E-05 44.2 3.9 87 106-193 432-526 (623)
68 PF00560 LRR_1: Leucine Rich R 81.7 1.1 2.3E-05 22.0 1.4 14 117-130 1-14 (22)
69 PF13013 F-box-like_2: F-box-l 81.6 0.97 2.1E-05 32.6 1.7 30 7-36 21-50 (109)
70 COG4886 Leucine-rich repeat (L 79.1 0.59 1.3E-05 41.9 -0.1 63 107-171 130-196 (394)
71 PF13504 LRR_7: Leucine rich r 79.0 1.7 3.6E-05 19.9 1.5 13 116-128 1-13 (17)
72 KOG0472 Leucine-rich repeat pr 78.3 1 2.2E-05 40.3 1.0 38 111-148 430-470 (565)
73 PF09372 PRANC: PRANC domain; 77.6 1.8 3.9E-05 30.5 2.0 25 6-30 70-94 (97)
74 smart00368 LRR_RI Leucine rich 76.5 2.2 4.7E-05 22.4 1.7 22 136-157 2-23 (28)
75 COG5238 RNA1 Ran GTPase-activa 74.1 2.2 4.7E-05 36.2 1.9 57 116-172 185-253 (388)
76 KOG0531 Protein phosphatase 1, 72.7 0.73 1.6E-05 41.8 -1.3 97 114-214 93-197 (414)
77 KOG0472 Leucine-rich repeat pr 66.6 0.8 1.7E-05 40.9 -2.3 107 104-214 194-308 (565)
78 KOG4237 Extracellular matrix p 63.6 5.6 0.00012 35.6 2.3 78 114-193 272-357 (498)
79 KOG4658 Apoptotic ATPase [Sign 62.8 4.1 8.8E-05 40.8 1.5 99 114-214 543-653 (889)
80 KOG4579 Leucine-rich repeat (L 62.3 0.72 1.6E-05 35.0 -2.9 56 115-172 52-111 (177)
81 KOG3763 mRNA export factor TAP 61.1 1.8 3.8E-05 40.1 -1.2 61 133-193 215-281 (585)
82 KOG4237 Extracellular matrix p 60.9 3.4 7.3E-05 36.9 0.5 59 201-266 272-336 (498)
83 KOG3763 mRNA export factor TAP 58.2 5.1 0.00011 37.3 1.2 12 135-146 243-254 (585)
84 KOG0531 Protein phosphatase 1, 55.2 3.1 6.7E-05 37.7 -0.7 53 118-171 142-196 (414)
85 COG5238 RNA1 Ran GTPase-activa 52.4 16 0.00035 31.2 3.1 154 109-265 85-285 (388)
86 smart00370 LRR Leucine-rich re 35.9 21 0.00045 17.9 0.9 20 251-270 1-20 (26)
87 smart00369 LRR_TYP Leucine-ric 35.9 21 0.00045 17.9 0.9 20 251-270 1-20 (26)
88 KOG3926 F-box proteins [Amino 35.4 8.1 0.00018 32.5 -1.1 51 6-56 200-257 (332)
89 PF13306 LRR_5: Leucine rich r 29.5 1.4E+02 0.0031 21.3 4.9 51 115-169 11-66 (129)
90 KOG1665 AFH1-interacting prote 27.7 86 0.0019 25.9 3.5 40 133-172 168-207 (302)
91 PF07735 FBA_2: F-box associat 25.4 97 0.0021 19.7 3.0 30 139-168 35-69 (70)
92 smart00446 LRRcap occurring C- 24.2 49 0.0011 17.1 1.1 16 155-170 7-22 (26)
93 KOG4408 Putative Mg2+ and Co2+ 23.0 25 0.00055 30.7 -0.2 34 8-41 8-41 (386)
94 KOG0532 Leucine-rich repeat (L 22.8 9.3 0.0002 35.9 -3.0 192 74-283 37-240 (722)
95 KOG1665 AFH1-interacting prote 22.5 49 0.0011 27.3 1.3 72 135-213 195-271 (302)
96 PF06881 Elongin_A: RNA polyme 22.2 1.1E+02 0.0023 22.0 2.9 31 6-36 2-32 (109)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=8e-21 Score=156.33 Aligned_cols=200 Identities=21% Similarity=0.255 Sum_probs=144.2
Q ss_pred CCCCCHHHHHHHhcCCChhhHHhhhhcccchhhc------ccccceeeEecccccccccccccccccccccC-----CCh
Q 041569 8 ISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQF------QNSFPILDFDLMNFIVRIEIKLRIYVCPLDVE-----GSS 76 (285)
Q Consensus 8 ~~~LP~~il~~I~s~L~~~~~~~~~~vskrWr~l------w~~~~~l~~~~~~~~~~v~~~~~l~~~~~~~~-----~~~ 76 (285)
|..|||||+..||+.|+-+++.+++.|||||+++ |.. ++.......+.+- .+.+++-...++ .+.
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~---lDl~~r~i~p~~l-~~l~~rgV~v~Rlar~~~~~ 173 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT---LDLTGRNIHPDVL-GRLLSRGVIVFRLARSFMDQ 173 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee---eccCCCccChhHH-HHHHhCCeEEEEcchhhhcC
Confidence 8899999999999999999999999999999987 654 3444433333221 111111111111 011
Q ss_pred hHHHHHHHHHHHCCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeee-ecChH
Q 041569 77 PLFDKWIELATENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEF-PLNDR 151 (285)
Q Consensus 77 ~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~-~~~~~ 151 (285)
..+.... ..+..+++.++++. .......+...+..|..|+.|.|.|..+.+ -.+.-.+|+.|+|+.| .++..
T Consensus 174 prlae~~-~~frsRlq~lDLS~--s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n 250 (419)
T KOG2120|consen 174 PRLAEHF-SPFRSRLQHLDLSN--SVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN 250 (419)
T ss_pred chhhhhh-hhhhhhhHHhhcch--hheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh
Confidence 1111111 11345799999988 556667777788889999999999999877 2234688999999999 68999
Q ss_pred HHHHHHhCCCccceeeeecCCCcCeE---EEc--cCCcceEEEeecC------CCceEEEeCCCccEEEEeeCc
Q 041569 152 ELHHLISKCPLLEDLSISHCHSLGRI---MIS--SNKLEHLLISSCY------GLNALDVDAPRLLSFIFDLNP 214 (285)
Q Consensus 152 ~l~~l~~~cp~Le~L~l~~c~~~~~~---~i~--~~~L~~L~l~~~~------~~~~~~~~~p~L~~l~~~~~~ 214 (285)
++..+++.|..|..|++++|...+.. .|. +++|+.|++++|. ++..+...+|+|..|+++++.
T Consensus 251 ~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 251 ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred HHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence 99999999999999999999765533 122 2899999999998 334445578999999998875
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.29 E-value=2.4e-13 Score=117.02 Aligned_cols=162 Identities=22% Similarity=0.364 Sum_probs=112.7
Q ss_pred CCCHHHHHHHhcCCChhhHHhhhhcccchhhc------ccccceeeEecccccccccccccccccccccCCChhHHHHHH
Q 041569 10 DLPPSIIHHIMTYLSAKEVTRTSILSTSWNQF------QNSFPILDFDLMNFIVRIEIKLRIYVCPLDVEGSSPLFDKWI 83 (285)
Q Consensus 10 ~LP~~il~~I~s~L~~~~~~~~~~vskrWr~l------w~~~~~l~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~l 83 (285)
.||+|++.+|||+|+++.+.+++++|+.|... |..+...+|.. .++ .. -+...+
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~r-----Dv~-g~--------------VV~~~~ 133 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQR-----DVD-GG--------------VVENMI 133 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchh-----cCC-Cc--------------ceehHh
Confidence 39999999999999999999999999999876 66544433322 122 11 111111
Q ss_pred HHHHHCCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC------CCccccccceEEeeee-ecChHHHHHH
Q 041569 84 ELATENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL------PSFTCAHLKKLLLSEF-PLNDRELHHL 156 (285)
Q Consensus 84 ~~~~~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~------~~~~~~~L~~L~L~~~-~~~~~~l~~l 156 (285)
.. .+..++++.+..+ .......+-.....|++++.|.+.+|...+ .+..|+.|+.+.|..| .+|+..++.+
T Consensus 134 ~R-cgg~lk~LSlrG~-r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l 211 (483)
T KOG4341|consen 134 SR-CGGFLKELSLRGC-RAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYL 211 (483)
T ss_pred hh-hcccccccccccc-ccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHH
Confidence 21 2245788887774 122333444455568999999999996433 4456899999999997 5699999999
Q ss_pred HhCCCccceeeeecCCCcCeEEEcc-----CCcceEEEeecC
Q 041569 157 ISKCPLLEDLSISHCHSLGRIMISS-----NKLEHLLISSCY 193 (285)
Q Consensus 157 ~~~cp~Le~L~l~~c~~~~~~~i~~-----~~L~~L~l~~~~ 193 (285)
...||+|++|++++|+.+..-.|.+ ..++.+...+|.
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~ 253 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL 253 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccc
Confidence 9999999999999998666533332 446666666665
No 3
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.92 E-value=7.5e-10 Score=67.87 Aligned_cols=35 Identities=31% Similarity=0.718 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHhcCCChhhHHhhhhcccchhhcc
Q 041569 8 ISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQ 42 (285)
Q Consensus 8 ~~~LP~~il~~I~s~L~~~~~~~~~~vskrWr~lw 42 (285)
|..||+||+.+||++|+.+|+.+++.|||+|+++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999874
No 4
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=8.7e-09 Score=89.79 Aligned_cols=101 Identities=21% Similarity=0.221 Sum_probs=72.8
Q ss_pred cCCccEEEEcCeeecC-----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEcc---CCcce
Q 041569 115 AKLLTSLKLVGCKLEL-----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISS---NKLEH 186 (285)
Q Consensus 115 ~~~L~~L~L~~~~~~~-----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~---~~L~~ 186 (285)
.|+|+.|+|+.+.+.. ....+++||+|+|.+|.++..++..++..||.|+.|.+.+.........+. ..|+.
T Consensus 171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~ 250 (505)
T KOG3207|consen 171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE 250 (505)
T ss_pred cccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence 3667777777666543 123478999999999999999999999999999999999876333322222 68999
Q ss_pred EEEeecC--CCc--eEEEeCCCccEEEEeeCcE
Q 041569 187 LLISSCY--GLN--ALDVDAPRLLSFIFDLNPI 215 (285)
Q Consensus 187 L~l~~~~--~~~--~~~~~~p~L~~l~~~~~~~ 215 (285)
|++++.. +.. ...-+.|+|+.|.+..+.+
T Consensus 251 LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi 283 (505)
T KOG3207|consen 251 LDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGI 283 (505)
T ss_pred ccccCCcccccccccccccccchhhhhccccCc
Confidence 9998876 222 2334678888887776653
No 5
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.1e-08 Score=85.18 Aligned_cols=129 Identities=27% Similarity=0.347 Sum_probs=96.6
Q ss_pred HHHHCCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC-----CCc-cccccceEEeeee--ecChHHHHHH
Q 041569 85 LATENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL-----PSF-TCAHLKKLLLSEF--PLNDRELHHL 156 (285)
Q Consensus 85 ~~~~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-----~~~-~~~~L~~L~L~~~--~~~~~~l~~l 156 (285)
.|...+++.+.++.+.+ .......-.+.+|+.|.+|+|+.|.+.. ... --++|+.|+|+|+ .+.+.++..+
T Consensus 230 iAkN~~L~~lnlsm~sG-~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL 308 (419)
T KOG2120|consen 230 IAKNSNLVRLNLSMCSG-FTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL 308 (419)
T ss_pred Hhccccceeeccccccc-cchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH
Confidence 33456899999988522 2334444455679999999999996543 112 2689999999999 4577899999
Q ss_pred HhCCCccceeeeecCCCcCeEEEcc----CCcceEEEeecCCC---ceEEE-eCCCccEEEEeeCc
Q 041569 157 ISKCPLLEDLSISHCHSLGRIMISS----NKLEHLLISSCYGL---NALDV-DAPRLLSFIFDLNP 214 (285)
Q Consensus 157 ~~~cp~Le~L~l~~c~~~~~~~i~~----~~L~~L~l~~~~~~---~~~~~-~~p~L~~l~~~~~~ 214 (285)
...||+|.+|++++|..++.-.+.. +.|++|.++.|+.+ ..+++ ..|.|.+|++.|+.
T Consensus 309 ~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 309 VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 9999999999999998777633322 88999999999943 33555 67888888887763
No 6
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.49 E-value=3.3e-08 Score=60.77 Aligned_cols=37 Identities=38% Similarity=0.796 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHhcCCChhhHHhhhhcccchhhcccc
Q 041569 8 ISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQNS 44 (285)
Q Consensus 8 ~~~LP~~il~~I~s~L~~~~~~~~~~vskrWr~lw~~ 44 (285)
|++||+|++.+||++|+.+|+++++.|||+|+++..+
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence 5679999999999999999999999999999998654
No 7
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.37 E-value=2.4e-07 Score=54.70 Aligned_cols=33 Identities=27% Similarity=0.583 Sum_probs=31.2
Q ss_pred CCHHHHHHHhcCCChhhHHhhhhcccchhhccc
Q 041569 11 LPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQN 43 (285)
Q Consensus 11 LP~~il~~I~s~L~~~~~~~~~~vskrWr~lw~ 43 (285)
||+|++.+||++++.+|+.+++.|||+|+.+..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~ 33 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLID 33 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999999854
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.34 E-value=8.2e-07 Score=88.85 Aligned_cols=122 Identities=19% Similarity=0.191 Sum_probs=67.9
Q ss_pred CCCceEEEEeeeCCCccccCCcccc-CcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccce
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIF-SAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLED 165 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 165 (285)
++++.|+++.. .. ...+|..++ .+.+|++|+|++|.+.. +...+++|++|+|.++.++... ...+..+++|++
T Consensus 93 ~~L~~L~Ls~n--~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~-p~~~~~l~~L~~ 168 (968)
T PLN00113 93 PYIQTINLSNN--QL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEI-PNDIGSFSSLKV 168 (968)
T ss_pred CCCCEEECCCC--cc-CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccC-ChHHhcCCCCCE
Confidence 56777776652 11 124566555 57788888888876654 3345777888888777664221 122456777777
Q ss_pred eeeecCCCcCeE--EEcc-CCcceEEEeecCCCceEE---EeCCCccEEEEeeCc
Q 041569 166 LSISHCHSLGRI--MISS-NKLEHLLISSCYGLNALD---VDAPRLLSFIFDLNP 214 (285)
Q Consensus 166 L~l~~c~~~~~~--~i~~-~~L~~L~l~~~~~~~~~~---~~~p~L~~l~~~~~~ 214 (285)
|++++|.-...+ .+.. ++|+.|++.+|.-...+. -..++|+.|++.++.
T Consensus 169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223 (968)
T ss_pred EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence 777776422111 1112 566677666664111111 134556666655544
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.17 E-value=3.1e-06 Score=85.90 Aligned_cols=56 Identities=23% Similarity=0.283 Sum_probs=25.9
Q ss_pred CCCccceeeeecCCCcCeEEEc--cCCcceEEEeecCCCceEEEeCCCccEEEEeeCc
Q 041569 159 KCPLLEDLSISHCHSLGRIMIS--SNKLEHLLISSCYGLNALDVDAPRLLSFIFDLNP 214 (285)
Q Consensus 159 ~cp~Le~L~l~~c~~~~~~~i~--~~~L~~L~l~~~~~~~~~~~~~p~L~~l~~~~~~ 214 (285)
.+++|+.|++++|..++.+... .++|+.|.+.+|..+..+....++|+.|.+.+..
T Consensus 679 ~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~ 736 (1153)
T PLN03210 679 YLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETA 736 (1153)
T ss_pred ccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCc
Confidence 3455555555555444433221 1455555555554333333233455555554443
No 10
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.13 E-value=2.7e-06 Score=85.19 Aligned_cols=62 Identities=21% Similarity=0.082 Sum_probs=25.7
Q ss_pred CccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecC
Q 041569 109 PQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHC 171 (285)
Q Consensus 109 ~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 171 (285)
|..+..+++|+.|+|++|.+.. ....+++|++|+|.++.++... -.-+..+++|+.|++.+|
T Consensus 157 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n 222 (968)
T PLN00113 157 PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI-PRELGQMKSLKWIYLGYN 222 (968)
T ss_pred ChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcC-ChHHcCcCCccEEECcCC
Confidence 3333344555555555554322 1123445555555544432111 011233445555555444
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.12 E-value=1.7e-06 Score=75.16 Aligned_cols=171 Identities=18% Similarity=0.084 Sum_probs=106.7
Q ss_pred CCCceEEEEeeeCCCccccCCccccCc---CCccEEEEcCeeecC--------CCccc-cccceEEeeeeecChH---HH
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIFSA---KLLTSLKLVGCKLEL--------PSFTC-AHLKKLLLSEFPLNDR---EL 153 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~---~~L~~L~L~~~~~~~--------~~~~~-~~L~~L~L~~~~~~~~---~l 153 (285)
++++++++... .... ..+..+... ++|++|++++|.+.. ....+ ++|+.|++.++.++.. .+
T Consensus 81 ~~L~~L~l~~~--~~~~-~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 81 CGLQELDLSDN--ALGP-DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred CceeEEEccCC--CCCh-hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 57777777652 2211 111111122 559999999887763 11235 8889999999988643 34
Q ss_pred HHHHhCCCccceeeeecCCCcCeEE---Ec-----cCCcceEEEeecCC-------CceEEEeCCCccEEEEeeCcEee-
Q 041569 154 HHLISKCPLLEDLSISHCHSLGRIM---IS-----SNKLEHLLISSCYG-------LNALDVDAPRLLSFIFDLNPIPI- 217 (285)
Q Consensus 154 ~~l~~~cp~Le~L~l~~c~~~~~~~---i~-----~~~L~~L~l~~~~~-------~~~~~~~~p~L~~l~~~~~~~~~- 217 (285)
...+..+++|++|++++|. ++... +. .++|++|++++|.- +....-..|+|++|+++++.+.-
T Consensus 158 ~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~ 236 (319)
T cd00116 158 AKALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA 236 (319)
T ss_pred HHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence 4456677889999998875 22111 11 15899999998851 11112246889999998876321
Q ss_pred -----e-----cCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCcc
Q 041569 218 -----I-----STNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVET 266 (285)
Q Consensus 218 -----~-----~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~ 266 (285)
. ..+.|+++++....+.. .....+...+..+++|+.++++.+....
T Consensus 237 ~~~~l~~~~~~~~~~L~~L~l~~n~i~~---~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 237 GAAALASALLSPNISLLTLSLSCNDITD---DGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred HHHHHHHHHhccCCCceEEEccCCCCCc---HHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 0 12578888887644432 2334555677777899999998888875
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.08 E-value=2.6e-07 Score=83.68 Aligned_cols=145 Identities=17% Similarity=0.151 Sum_probs=84.2
Q ss_pred cCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEcc----CCc
Q 041569 113 FSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISS----NKL 184 (285)
Q Consensus 113 ~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~----~~L 184 (285)
+.+.+++.|+|..+.+.. ..+++..|+.|+|+.+.+..-+... =+.|++|++|++++.. ++.+.-.+ ..|
T Consensus 266 y~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~-WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~L 343 (873)
T KOG4194|consen 266 YGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS-WSFTQKLKELDLSSNR-ITRLDEGSFRVLSQL 343 (873)
T ss_pred eeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch-hhhcccceeEeccccc-cccCChhHHHHHHHh
Confidence 446667777777666544 3356677777777766442222222 2347778888877653 33333222 567
Q ss_pred ceEEEeecC--CCceEEE-eCCCccEEEEeeCcEe---------eecCCCcccceeccccCCCCChhhHHHHHHHhccCC
Q 041569 185 EHLLISSCY--GLNALDV-DAPRLLSFIFDLNPIP---------IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASS 252 (285)
Q Consensus 185 ~~L~l~~~~--~~~~~~~-~~p~L~~l~~~~~~~~---------~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~ 252 (285)
+.|+++... ++.+..+ ...+|+.|++..+.+. +...++|+.+.+..+.+..++. +.+.+++
T Consensus 344 e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~k-------rAfsgl~ 416 (873)
T KOG4194|consen 344 EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPK-------RAFSGLE 416 (873)
T ss_pred hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecch-------hhhccCc
Confidence 777777664 3333333 4566777777666521 2233466666666554444443 5667788
Q ss_pred CceEEEEEeCCCcc
Q 041569 253 QIERLCIDFSSVET 266 (285)
Q Consensus 253 ~L~~L~L~~~~~~~ 266 (285)
+||+|+|.-+.+..
T Consensus 417 ~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 417 ALEHLDLGDNAIAS 430 (873)
T ss_pred ccceecCCCCccee
Confidence 88888887766654
No 13
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=5.3e-07 Score=78.88 Aligned_cols=163 Identities=18% Similarity=0.144 Sum_probs=89.6
Q ss_pred cCCccEEEEcCeeecC-----CCccccccceEEeeeeec-ChHHHHHHHhCCCccceeeeecCCCc---Ce-EEEccCCc
Q 041569 115 AKLLTSLKLVGCKLEL-----PSFTCAHLKKLLLSEFPL-NDRELHHLISKCPLLEDLSISHCHSL---GR-IMISSNKL 184 (285)
Q Consensus 115 ~~~L~~L~L~~~~~~~-----~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~~---~~-~~i~~~~L 184 (285)
...|+...|.++.... -+..||+++.|+|+++-+ ....+..+++-.|+||.|+++..... +. ..-..++|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 4566777777765543 123577777777777755 66677777777777777777765311 11 11122677
Q ss_pred ceEEEeecC----CCceEEEeCCCccEEEEeeCc-Ee------------------------------eecCCCcccceec
Q 041569 185 EHLLISSCY----GLNALDVDAPRLLSFIFDLNP-IP------------------------------IISTNALCPWNVT 229 (285)
Q Consensus 185 ~~L~l~~~~----~~~~~~~~~p~L~~l~~~~~~-~~------------------------------~~~~~~L~~l~i~ 229 (285)
|.|.+..|. ++..+....|+|+.|.+.++. .- +...|.|+.+++.
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 777777775 222333456777766666652 10 1122334444443
Q ss_pred cccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCccCCCchhhhhhhh
Q 041569 230 LDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYK 278 (285)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~f~~L~~ 278 (285)
...+.++...+ .........+|+||.|.++-++...|+...-...+++
T Consensus 280 ~tgi~si~~~d-~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~n 327 (505)
T KOG3207|consen 280 STGIASIAEPD-VESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLEN 327 (505)
T ss_pred ccCcchhcCCC-ccchhhhcccccceeeecccCccccccccchhhccch
Confidence 32222221111 1112334567888888888888876654333333333
No 14
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.03 E-value=4.2e-06 Score=76.06 Aligned_cols=77 Identities=25% Similarity=0.314 Sum_probs=47.6
Q ss_pred ccCcCCccEEEEcCeeecC-C--CccccccceEEeeeeec---ChHHHHHHHhCCCccceeeeecCCCcCeEEEcc----
Q 041569 112 IFSAKLLTSLKLVGCKLEL-P--SFTCAHLKKLLLSEFPL---NDRELHHLISKCPLLEDLSISHCHSLGRIMISS---- 181 (285)
Q Consensus 112 ~~~~~~L~~L~L~~~~~~~-~--~~~~~~L~~L~L~~~~~---~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~---- 181 (285)
+...+||+.+++..+.+.. + .....+|+.|+|.++.+ +.+.+. ..|.||.|+++... +..+.-++
T Consensus 98 f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~----~l~alrslDLSrN~-is~i~~~sfp~~ 172 (873)
T KOG4194|consen 98 FYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELS----ALPALRSLDLSRNL-ISEIPKPSFPAK 172 (873)
T ss_pred HhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHH----hHhhhhhhhhhhch-hhcccCCCCCCC
Confidence 3456788888888877665 2 23356688888888865 444443 45778888887653 33332222
Q ss_pred CCcceEEEeecC
Q 041569 182 NKLEHLLISSCY 193 (285)
Q Consensus 182 ~~L~~L~l~~~~ 193 (285)
+++++|++.+..
T Consensus 173 ~ni~~L~La~N~ 184 (873)
T KOG4194|consen 173 VNIKKLNLASNR 184 (873)
T ss_pred CCceEEeecccc
Confidence 566666666653
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.97 E-value=2.6e-06 Score=74.07 Aligned_cols=167 Identities=20% Similarity=0.121 Sum_probs=108.6
Q ss_pred CCCceEEEEeeeCCCccc---cCCccccCc-CCccEEEEcCeeecC--------CCccccccceEEeeeeecChHHHHHH
Q 041569 89 NGLEVLDFMVIADENTYY---ALPQTIFSA-KLLTSLKLVGCKLEL--------PSFTCAHLKKLLLSEFPLNDRELHHL 156 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~---~l~~~~~~~-~~L~~L~L~~~~~~~--------~~~~~~~L~~L~L~~~~~~~~~l~~l 156 (285)
+++++++++.+ ..... .+...+..+ ++|+.|++++|.+.. ....+++|++|++.++.++++.+..+
T Consensus 108 ~~L~~L~ls~~--~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 185 (319)
T cd00116 108 SSLQELKLNNN--GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRAL 185 (319)
T ss_pred CcccEEEeeCC--ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHH
Confidence 45888888763 22211 122233445 899999999998773 12245789999999999977766555
Q ss_pred H---hCCCccceeeeecCCCcCeE-------EEc-cCCcceEEEeecCCCce---------EEEeCCCccEEEEeeCcEe
Q 041569 157 I---SKCPLLEDLSISHCHSLGRI-------MIS-SNKLEHLLISSCYGLNA---------LDVDAPRLLSFIFDLNPIP 216 (285)
Q Consensus 157 ~---~~cp~Le~L~l~~c~~~~~~-------~i~-~~~L~~L~l~~~~~~~~---------~~~~~p~L~~l~~~~~~~~ 216 (285)
. ..+++|++|++++|. ++.. .+. .++|++|++.+|. +.. +....+.|++|.+.++.+.
T Consensus 186 ~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 186 AEGLKANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 4 455699999999985 2211 111 2789999999985 221 1112479999999998742
Q ss_pred ----------eecCCCcccceeccccCCCCChhhHHHHHHHhccC-CCceEEEEEeC
Q 041569 217 ----------IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGAS-SQIERLCIDFS 262 (285)
Q Consensus 217 ----------~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~-~~L~~L~L~~~ 262 (285)
....+.|+.++++.+.+...+ ...+.+.+... +.|+.|++..+
T Consensus 264 ~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 264 DDGAKDLAEVLAEKESLLELDLRGNKFGEEG---AQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred cHHHHHHHHHHhcCCCccEEECCCCCCcHHH---HHHHHHHHhhcCCchhhcccCCC
Confidence 122357888887764443322 34455666666 78888887654
No 16
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.94 E-value=2.1e-06 Score=74.89 Aligned_cols=147 Identities=21% Similarity=0.248 Sum_probs=78.2
Q ss_pred ccccccceEEeeeeec-ChHHHHHHHhCCCccceeeeecCCCcCeEEEc-----cCCcceEEEeecC-----CCceEEEe
Q 041569 133 FTCAHLKKLLLSEFPL-NDRELHHLISKCPLLEDLSISHCHSLGRIMIS-----SNKLEHLLISSCY-----GLNALDVD 201 (285)
Q Consensus 133 ~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~-----~~~L~~L~l~~~~-----~~~~~~~~ 201 (285)
..+..|..|...++.. +++.+..+..+|++|+.|.+.+|..+++.... .++|+.+++.+|. .+..+..+
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 3455566666666533 55666666666666666666666554443332 2566666666665 23344456
Q ss_pred CCCccEEEEeeCcEeee-----------cCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEE-EeCCCccCCC
Q 041569 202 APRLLSFIFDLNPIPII-----------STNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCI-DFSSVETNSE 269 (285)
Q Consensus 202 ~p~L~~l~~~~~~~~~~-----------~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L-~~~~~~~~~~ 269 (285)
+|.|+.+.++-+..-.+ ....+..+.++. -+ .......+.+..|++||.+++ ...++...+.
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n-----~p-~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i 444 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDN-----CP-LITDATLEHLSICRNLERIELIDCQDVTKEAI 444 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecC-----CC-CchHHHHHHHhhCcccceeeeechhhhhhhhh
Confidence 66666666653331000 000111112211 00 111233467788899998776 5566655555
Q ss_pred chhhhhhhheeecccC
Q 041569 270 DATLHFLYKLRLWTYV 285 (285)
Q Consensus 270 ~~~f~~L~~L~l~~~~ 285 (285)
.++=..|++++.+-|+
T Consensus 445 ~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 445 SRFATHLPNIKVHAYF 460 (483)
T ss_pred HHHHhhCccceehhhc
Confidence 5666677777777664
No 17
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.79 E-value=1.1e-06 Score=80.59 Aligned_cols=124 Identities=32% Similarity=0.371 Sum_probs=80.8
Q ss_pred CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCe-eecC--------CCccccccceEEeeeee-cChHHHHHHHh
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGC-KLEL--------PSFTCAHLKKLLLSEFP-LNDRELHHLIS 158 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~--------~~~~~~~L~~L~L~~~~-~~~~~l~~l~~ 158 (285)
++++.+.+..+. ......+-.....|++|++|.+++| .... ....+++|+.|++.++. +++..+..+..
T Consensus 188 ~~L~~l~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 188 PLLKRLSLSGCS-KITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred chhhHhhhcccc-cCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 456666655421 1111113344456888999998873 2211 33457888999999887 78888888888
Q ss_pred CCCccceeeeecCCCcCeEEEcc-----CCcceEEEeecCCC-----ceEEEeCCCccEEEEeeC
Q 041569 159 KCPLLEDLSISHCHSLGRIMISS-----NKLEHLLISSCYGL-----NALDVDAPRLLSFIFDLN 213 (285)
Q Consensus 159 ~cp~Le~L~l~~c~~~~~~~i~~-----~~L~~L~l~~~~~~-----~~~~~~~p~L~~l~~~~~ 213 (285)
.||+||.|.+.+|..++...+.. +.|++|++.+|..+ ..+...+|+|+.|.+.+.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 89999999988888665544432 77999999888732 223335777777655443
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.76 E-value=3.4e-05 Score=78.51 Aligned_cols=74 Identities=26% Similarity=0.275 Sum_probs=42.1
Q ss_pred CCccceeeeecCCCcCeEE--Ecc-CCcceEEEeecCCCceEEE--eCCCccEEEEeeCcE--ee-ecCCCcccceeccc
Q 041569 160 CPLLEDLSISHCHSLGRIM--ISS-NKLEHLLISSCYGLNALDV--DAPRLLSFIFDLNPI--PI-ISTNALCPWNVTLD 231 (285)
Q Consensus 160 cp~Le~L~l~~c~~~~~~~--i~~-~~L~~L~l~~~~~~~~~~~--~~p~L~~l~~~~~~~--~~-~~~~~L~~l~i~~~ 231 (285)
+|+|+.|++++|.....+. +.. ++|+.|++.+|..+..+.. ..++|++|+++++.. .+ ...++++.++++..
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n 856 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRT 856 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCC
Confidence 4566666666665444322 112 6788888888875555542 457788888877641 11 11235666666554
Q ss_pred cC
Q 041569 232 CD 233 (285)
Q Consensus 232 ~~ 233 (285)
.+
T Consensus 857 ~i 858 (1153)
T PLN03210 857 GI 858 (1153)
T ss_pred CC
Confidence 33
No 19
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.69 E-value=1.3e-05 Score=76.40 Aligned_cols=136 Identities=17% Similarity=0.188 Sum_probs=75.7
Q ss_pred CCccEEEEcCeee-cC-----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeE-EEcc-CCcceE
Q 041569 116 KLLTSLKLVGCKL-EL-----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRI-MISS-NKLEHL 187 (285)
Q Consensus 116 ~~L~~L~L~~~~~-~~-----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~-~i~~-~~L~~L 187 (285)
.+|++|+++|... .. .+.-||+|++|.+.+..+..+++..+...+|+|..|+++++. ++.+ .++. .+|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHH
Confidence 5677777776432 11 334578888888888877666677777788888888888774 3322 2333 455555
Q ss_pred EEeecCC---CceEEE-eCCCccEEEEeeCcEe------------eecCCCcccceeccccCCCCChhhHHHHHHHhccC
Q 041569 188 LISSCYG---LNALDV-DAPRLLSFIFDLNPIP------------IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGAS 251 (285)
Q Consensus 188 ~l~~~~~---~~~~~~-~~p~L~~l~~~~~~~~------------~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~ 251 (285)
.+.+-.. ..-.++ ...+|+.|+++..... -...|.|+.++.+.. +.....++.++.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT------di~~~~le~ll~sH 274 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT------DINEEILEELLNSH 274 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc------chhHHHHHHHHHhC
Confidence 5444320 111112 4566777777665410 012356666665531 11223445566666
Q ss_pred CCceEEE
Q 041569 252 SQIERLC 258 (285)
Q Consensus 252 ~~L~~L~ 258 (285)
|+|+...
T Consensus 275 ~~L~~i~ 281 (699)
T KOG3665|consen 275 PNLQQIA 281 (699)
T ss_pred ccHhhhh
Confidence 6666654
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.57 E-value=0.00019 Score=69.20 Aligned_cols=112 Identities=25% Similarity=0.180 Sum_probs=53.7
Q ss_pred CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecCCCccccccceEEeeeeecChHHHHHHHhCCCccceeee
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLELPSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSI 168 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l 168 (285)
.+-..++++. . ....+|..+. ++|+.|.+.+|.+...+...++|++|+|+++.++.- - ...++|+.|++
T Consensus 201 ~~~~~LdLs~--~--~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~N~LtsL--P---~lp~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGE--S--GLTTLPDCLP--AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSL--P---VLPPGLLELSI 269 (788)
T ss_pred CCCcEEEcCC--C--CCCcCCcchh--cCCCEEEccCCcCCCCCCCCCCCcEEEecCCccCcc--c---Ccccccceeec
Confidence 3444555544 2 2334665443 367777777776654333356777777777755311 0 12355666666
Q ss_pred ecCCCcCeEEEccCCcceEEEeecCCCceEEEeCCCccEEEEeeC
Q 041569 169 SHCHSLGRIMISSNKLEHLLISSCYGLNALDVDAPRLLSFIFDLN 213 (285)
Q Consensus 169 ~~c~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~p~L~~l~~~~~ 213 (285)
.++. +..+.-...+|+.|.+.++ .+..+....|+|+.|+++++
T Consensus 270 s~N~-L~~Lp~lp~~L~~L~Ls~N-~Lt~LP~~p~~L~~LdLS~N 312 (788)
T PRK15387 270 FSNP-LTHLPALPSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDN 312 (788)
T ss_pred cCCc-hhhhhhchhhcCEEECcCC-ccccccccccccceeECCCC
Confidence 5553 2211111134444444444 23333223344444444444
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.57 E-value=9.9e-06 Score=63.99 Aligned_cols=79 Identities=24% Similarity=0.213 Sum_probs=30.4
Q ss_pred CcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCC--CcCeEE-Ecc-CCcceE
Q 041569 114 SAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCH--SLGRIM-ISS-NKLEHL 187 (285)
Q Consensus 114 ~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~--~~~~~~-i~~-~~L~~L 187 (285)
...+|+.|+|++|.+.. ....++.|++|.+.++.++.-. ..+...||+|++|.+++.. .+..+. +.. ++|+.|
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp T-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred hhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 35788999999988776 3345889999999999874321 1223468999999998764 222211 111 555555
Q ss_pred EEeecC
Q 041569 188 LISSCY 193 (285)
Q Consensus 188 ~l~~~~ 193 (285)
++.+++
T Consensus 119 ~L~~NP 124 (175)
T PF14580_consen 119 SLEGNP 124 (175)
T ss_dssp E-TT-G
T ss_pred eccCCc
Confidence 555544
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.35 E-value=0.0003 Score=67.92 Aligned_cols=54 Identities=22% Similarity=0.260 Sum_probs=28.5
Q ss_pred CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC-CCccccccceEEeeeeec
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL-PSFTCAHLKKLLLSEFPL 148 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~L~~L~L~~~~~ 148 (285)
.+...+.+.. .....+|..+ .++|+.|+|++|.+.. +..-+++|++|++.++.+
T Consensus 178 ~~~~~L~L~~----~~LtsLP~~I--p~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~L 232 (754)
T PRK15370 178 NNKTELRLKI----LGLTTIPACI--PEQITTLILDNNELKSLPENLQGNIKTLYANSNQL 232 (754)
T ss_pred cCceEEEeCC----CCcCcCCccc--ccCCcEEEecCCCCCcCChhhccCCCEEECCCCcc
Confidence 3455555544 2233445433 2467777777766554 222345666666666655
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.34 E-value=0.00025 Score=68.41 Aligned_cols=34 Identities=24% Similarity=0.224 Sum_probs=20.9
Q ss_pred cCCccEEEEcCeeecCCCccccccceEEeeeeec
Q 041569 115 AKLLTSLKLVGCKLELPSFTCAHLKKLLLSEFPL 148 (285)
Q Consensus 115 ~~~L~~L~L~~~~~~~~~~~~~~L~~L~L~~~~~ 148 (285)
.++|++|++++|.+...+...++|+.|++.++.+
T Consensus 241 p~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L 274 (788)
T PRK15387 241 PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPL 274 (788)
T ss_pred CCCCcEEEecCCccCcccCcccccceeeccCCch
Confidence 3678888888776654222245666666666544
No 24
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.32 E-value=9.3e-05 Score=70.76 Aligned_cols=132 Identities=20% Similarity=0.121 Sum_probs=89.6
Q ss_pred HHHHHHHHHHCCCceEEEEeeeCCCccccCCccccC-cCCccEEEEcCeeecC-----CCccccccceEEeeeeecChHH
Q 041569 79 FDKWIELATENGLEVLDFMVIADENTYYALPQTIFS-AKLLTSLKLVGCKLEL-----PSFTCAHLKKLLLSEFPLNDRE 152 (285)
Q Consensus 79 ~~~~l~~~~~~~l~~L~l~~~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~~~~-----~~~~~~~L~~L~L~~~~~~~~~ 152 (285)
++..+......++++|++... ..-...-+..++. +|+|++|.++|-.+.. .-.+||+|..|+++++.++.-
T Consensus 112 L~~~Ln~~sr~nL~~LdI~G~--~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl- 188 (699)
T KOG3665|consen 112 LKDLLNEESRQNLQHLDISGS--ELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL- 188 (699)
T ss_pred HHHHHhHHHHHhhhhcCcccc--chhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-
Confidence 334444556678999999762 2222233333443 7999999999987754 446899999999999988543
Q ss_pred HHHHHhCCCccceeeeecCCCcCeE---EEcc-CCcceEEEeecCCCce---------EEEeCCCccEEEEeeCcE
Q 041569 153 LHHLISKCPLLEDLSISHCHSLGRI---MISS-NKLEHLLISSCYGLNA---------LDVDAPRLLSFIFDLNPI 215 (285)
Q Consensus 153 l~~l~~~cp~Le~L~l~~c~~~~~~---~i~~-~~L~~L~l~~~~~~~~---------~~~~~p~L~~l~~~~~~~ 215 (285)
..++...+|+.|.+.+-..-... .+.. .+|+.|+|+.-..... -....|+|+.|+++|..+
T Consensus 189 --~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 189 --SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred --HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 33677899999998865432222 2222 7899999988762111 112489999999999873
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.25 E-value=0.0005 Score=66.48 Aligned_cols=169 Identities=12% Similarity=0.145 Sum_probs=85.8
Q ss_pred CCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC-CCccccccceEEeeeeecChHHHHHHHhCCCccceeee
Q 041569 90 GLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL-PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSI 168 (285)
Q Consensus 90 ~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l 168 (285)
+++.+.+.. . ....+|..++ ++|+.|++++|.+.. +..-.++|+.|.|.++.+.. +-.-+ ..+|+.|++
T Consensus 200 ~L~~L~Ls~--N--~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~~--LP~~l--~s~L~~L~L 269 (754)
T PRK15370 200 QITTLILDN--N--ELKSLPENLQ--GNIKTLYANSNQLTSIPATLPDTIQEMELSINRITE--LPERL--PSALQSLDL 269 (754)
T ss_pred CCcEEEecC--C--CCCcCChhhc--cCCCEEECCCCccccCChhhhccccEEECcCCccCc--CChhH--hCCCCEEEC
Confidence 455555544 1 1223444333 467777777776654 21123467777777775531 10001 246777777
Q ss_pred ecCCCcCeEEEc-cCCcceEEEeecCCCceEEEe-CCCccEEEEeeCcEe---eecCCCcccceeccccCCCCChhhHHH
Q 041569 169 SHCHSLGRIMIS-SNKLEHLLISSCYGLNALDVD-APRLLSFIFDLNPIP---IISTNALCPWNVTLDCDSNLDCDWFLS 243 (285)
Q Consensus 169 ~~c~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~-~p~L~~l~~~~~~~~---~~~~~~L~~l~i~~~~~~~~~~~~~~~ 243 (285)
+++ .++.+.-. .++|+.|++.+| .+..+... .++|+.|++.++.+. ....++|+.+.+....+..++.
T Consensus 270 s~N-~L~~LP~~l~~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~----- 342 (754)
T PRK15370 270 FHN-KISCLPENLPEELRYLSVYDN-SIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPA----- 342 (754)
T ss_pred cCC-ccCccccccCCCCcEEECCCC-ccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCCh-----
Confidence 644 34332111 146777777776 34433321 235667766666532 1122456666665544433322
Q ss_pred HHHHhccCCCceEEEEEeCCCccCCCchhhhhhhheee
Q 041569 244 LKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKLRL 281 (285)
Q Consensus 244 l~~~l~~~~~L~~L~L~~~~~~~~~~~~~f~~L~~L~l 281 (285)
.+ +++|+.|+++.+.+...+. .+..+|+.|.+
T Consensus 343 --~l---~~sL~~L~Ls~N~L~~LP~-~lp~~L~~LdL 374 (754)
T PRK15370 343 --SL---PPELQVLDVSKNQITVLPE-TLPPTITTLDV 374 (754)
T ss_pred --hh---cCcccEEECCCCCCCcCCh-hhcCCcCEEEC
Confidence 11 2688888888777765432 22344554443
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.25 E-value=6.2e-05 Score=59.47 Aligned_cols=96 Identities=25% Similarity=0.356 Sum_probs=28.1
Q ss_pred CcCCccEEEEcCeeecC---CCccccccceEEeeeeecCh-HHHHHHHhCCCccceeeeecCCCcCeEE--Ec--cCCcc
Q 041569 114 SAKLLTSLKLVGCKLEL---PSFTCAHLKKLLLSEFPLND-RELHHLISKCPLLEDLSISHCHSLGRIM--IS--SNKLE 185 (285)
Q Consensus 114 ~~~~L~~L~L~~~~~~~---~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~cp~Le~L~l~~c~~~~~~~--i~--~~~L~ 185 (285)
++..+++|+|.|+.+.. ....+.+|+.|+|+++.++. ++ +..+++|++|++++.. ++.+. +. .|+|+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~----l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG----LPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQ 91 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT--------TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCccccC----ccChhhhhhcccCCCC-CCccccchHHhCCcCC
Confidence 34578888999887765 33357888888888887732 22 4457888888888764 33321 21 26777
Q ss_pred eEEEeecC--CCceEE-E-eCCCccEEEEeeCc
Q 041569 186 HLLISSCY--GLNALD-V-DAPRLLSFIFDLNP 214 (285)
Q Consensus 186 ~L~l~~~~--~~~~~~-~-~~p~L~~l~~~~~~ 214 (285)
+|.+.+.. .+..+. + .+|+|+.|++.|++
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 77776654 222221 1 45666666666654
No 27
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.16 E-value=0.00017 Score=46.45 Aligned_cols=56 Identities=29% Similarity=0.214 Sum_probs=34.9
Q ss_pred CCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCC
Q 041569 116 KLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCH 172 (285)
Q Consensus 116 ~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~ 172 (285)
|+|+.|.+++|.+.. ....+++|++|+++++.++.-. ...+..+|+|+.|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCCc
Confidence 467777888776554 2235777777777777552111 1125567778888777663
No 28
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=0.00025 Score=59.78 Aligned_cols=169 Identities=17% Similarity=0.134 Sum_probs=112.5
Q ss_pred CCCceEEEEeeeCCCcc-ccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569 89 NGLEVLDFMVIADENTY-YALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLL 163 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 163 (285)
..++++++... .... ..+.+.+.+.|.|+.|+|+.+.+.. .+.+..+|++|.|.+...+.......++..|.+
T Consensus 71 ~~v~elDL~~N--~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 71 TDVKELDLTGN--LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhcccc--hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 46888887762 1111 2233344457999999999998865 335678999999999999888899999999999
Q ss_pred ceeeeecCC----CcCeEEEc--cCCcceEEEeecC-----CCceEEEeCCCccEEEEeeCcEe-------eecCCCccc
Q 041569 164 EDLSISHCH----SLGRIMIS--SNKLEHLLISSCY-----GLNALDVDAPRLLSFIFDLNPIP-------IISTNALCP 225 (285)
Q Consensus 164 e~L~l~~c~----~~~~~~i~--~~~L~~L~l~~~~-----~~~~~~~~~p~L~~l~~~~~~~~-------~~~~~~L~~ 225 (285)
++|+++... +++.-++. ++.++.|....|. ....+.-..||+..+.+..+++. ....|.+..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 999998762 22222222 3789999999997 22334445789998888777532 123344444
Q ss_pred ceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCc
Q 041569 226 WNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVE 265 (285)
Q Consensus 226 l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~ 265 (285)
+++....+++ +...+-+.++|.|..|.+....+.
T Consensus 229 LnL~~~~ids------wasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 229 LNLGANNIDS------WASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hhhccccccc------HHHHHHHcCCchhheeeccCCccc
Confidence 4544322211 223355777888888877665554
No 29
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.90 E-value=0.00012 Score=67.24 Aligned_cols=104 Identities=29% Similarity=0.394 Sum_probs=72.3
Q ss_pred CCCceEEEEee-e-CCCccccCCccccCcCCccEEEEcCee-ecC-----CCccccccceEEeeeee-cChHHHHHHHhC
Q 041569 89 NGLEVLDFMVI-A-DENTYYALPQTIFSAKLLTSLKLVGCK-LEL-----PSFTCAHLKKLLLSEFP-LNDRELHHLISK 159 (285)
Q Consensus 89 ~~l~~L~l~~~-~-~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~-----~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~ 159 (285)
+.++++++..+ . ..............|++|+.|+++.|. ..+ .+..|++|++|.+.+|. ++++++..+...
T Consensus 214 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~ 293 (482)
T KOG1947|consen 214 PNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAER 293 (482)
T ss_pred chhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHh
Confidence 57888887651 0 011111122244458999999999997 544 33459999999999897 799999999999
Q ss_pred CCccceeeeecCCCcCeEEEc-----cCCcceEEEeec
Q 041569 160 CPLLEDLSISHCHSLGRIMIS-----SNKLEHLLISSC 192 (285)
Q Consensus 160 cp~Le~L~l~~c~~~~~~~i~-----~~~L~~L~l~~~ 192 (285)
||+|++|++++|..++...+. +++++.|.+..+
T Consensus 294 ~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 294 CPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred cCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 999999999999876432221 255555555444
No 30
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.74 E-value=2.5e-05 Score=71.80 Aligned_cols=109 Identities=19% Similarity=0.189 Sum_probs=53.9
Q ss_pred ccccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEE-
Q 041569 104 TYYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIM- 178 (285)
Q Consensus 104 ~~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~- 178 (285)
+...+|+++....+|++|+|+++.+.. ...++.+|.+|.+++..-+...+-.-+....+|..++++.. ++..+.
T Consensus 161 rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPe 239 (1255)
T KOG0444|consen 161 RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPE 239 (1255)
T ss_pred hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchH
Confidence 445666666666777777777765543 12233444444454443222222222334456666666633 232211
Q ss_pred -E-ccCCcceEEEeecCCCceEEEe---CCCccEEEEeeCc
Q 041569 179 -I-SSNKLEHLLISSCYGLNALDVD---APRLLSFIFDLNP 214 (285)
Q Consensus 179 -i-~~~~L~~L~l~~~~~~~~~~~~---~p~L~~l~~~~~~ 214 (285)
+ .-++|+.|++++.. ++++... =-+|++|.++.+.
T Consensus 240 cly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQ 279 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQ 279 (1255)
T ss_pred HHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccch
Confidence 0 01667777776652 3333321 1456666666655
No 31
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.59 E-value=0.00016 Score=66.79 Aligned_cols=127 Identities=21% Similarity=0.212 Sum_probs=75.5
Q ss_pred ccCCccccC-cCCccEEEEcCeeecC---CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEcc
Q 041569 106 YALPQTIFS-AKLLTSLKLVGCKLEL---PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISS 181 (285)
Q Consensus 106 ~~l~~~~~~-~~~L~~L~L~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~ 181 (285)
..+|..++. ...|-.|+|+++++.. ....+.+|++|.|+++.+....+.. +-....|+.|.+++-. -+...++.
T Consensus 139 etIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vLhms~Tq-RTl~N~Pt 216 (1255)
T KOG0444|consen 139 ETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVLHMSNTQ-RTLDNIPT 216 (1255)
T ss_pred ccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc-Cccchhhhhhhccccc-chhhcCCC
Confidence 445555544 3556667777776554 2245777888888888765555554 2234455566666542 12222322
Q ss_pred -----CCcceEEEeecCCCceEE---EeCCCccEEEEeeCcEeeecCC-----CcccceeccccCCC
Q 041569 182 -----NKLEHLLISSCYGLNALD---VDAPRLLSFIFDLNPIPIISTN-----ALCPWNVTLDCDSN 235 (285)
Q Consensus 182 -----~~L~~L~l~~~~~~~~~~---~~~p~L~~l~~~~~~~~~~~~~-----~L~~l~i~~~~~~~ 235 (285)
.+|+.++++.. ++..+. ...++|++|.++|+.+.-..+. .++.++++.+.+..
T Consensus 217 sld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~ 282 (1255)
T KOG0444|consen 217 SLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTV 282 (1255)
T ss_pred chhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhcc
Confidence 67888888876 344443 2578999999999985433332 57777776644433
No 32
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=96.57 E-value=0.0033 Score=32.83 Aligned_cols=25 Identities=36% Similarity=0.680 Sum_probs=22.1
Q ss_pred ccceEEeeeeec-ChHHHHHHHhCCC
Q 041569 137 HLKKLLLSEFPL-NDRELHHLISKCP 161 (285)
Q Consensus 137 ~L~~L~L~~~~~-~~~~l~~l~~~cp 161 (285)
+||+|.|..+.| ++..++.++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999999 5558999999998
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.54 E-value=0.0009 Score=57.52 Aligned_cols=189 Identities=14% Similarity=0.094 Sum_probs=100.5
Q ss_pred hhHHHHHHHHHHH--CCCceEEEEeeeCCCccccCC-------ccccCcCCccEEEEcCeeecC--------CCcccccc
Q 041569 76 SPLFDKWIELATE--NGLEVLDFMVIADENTYYALP-------QTIFSAKLLTSLKLVGCKLEL--------PSFTCAHL 138 (285)
Q Consensus 76 ~~~~~~~l~~~~~--~~l~~L~l~~~~~~~~~~~l~-------~~~~~~~~L~~L~L~~~~~~~--------~~~~~~~L 138 (285)
+....+|+..... +.+++..++.....+....+| ..+..|+.|+.|+||.|.+.+ ...++..|
T Consensus 43 G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L 122 (382)
T KOG1909|consen 43 GTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDL 122 (382)
T ss_pred hHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCH
Confidence 3445666666554 234444443321222222233 334457788888888887755 11246777
Q ss_pred ceEEeeeeecCh---HHH---------HHHHhCCCccceeeeecCCCcC----eE--EEc-cCCcceEEEeecC-CCceE
Q 041569 139 KKLLLSEFPLND---REL---------HHLISKCPLLEDLSISHCHSLG----RI--MIS-SNKLEHLLISSCY-GLNAL 198 (285)
Q Consensus 139 ~~L~L~~~~~~~---~~l---------~~l~~~cp~Le~L~l~~c~~~~----~~--~i~-~~~L~~L~l~~~~-~~~~~ 198 (285)
++|.|.+|.++. ..+ ...+..-|.|+++...+..--. .+ .+. ++.|+.+++.... ....+
T Consensus 123 ~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~ 202 (382)
T KOG1909|consen 123 EELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV 202 (382)
T ss_pred HHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchh
Confidence 888887776632 221 2223345667777666553111 00 111 1677777776654 11111
Q ss_pred -----E-EeCCCccEEEEeeCcEe----------eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeC
Q 041569 199 -----D-VDAPRLLSFIFDLNPIP----------IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFS 262 (285)
Q Consensus 199 -----~-~~~p~L~~l~~~~~~~~----------~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~ 262 (285)
. .++|.|+.|++.++.+. +..-|.|+.++++...+..-+... -+..+-.+.|+|+.|.+.++
T Consensus 203 ~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a--~~~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 203 TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA--FVDALKESAPSLEVLELAGN 280 (382)
T ss_pred HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH--HHHHHhccCCCCceeccCcc
Confidence 1 25788888888887632 222335666666554443333321 12234456788888888887
Q ss_pred CCcc
Q 041569 263 SVET 266 (285)
Q Consensus 263 ~~~~ 266 (285)
.+..
T Consensus 281 eIt~ 284 (382)
T KOG1909|consen 281 EITR 284 (382)
T ss_pred hhHH
Confidence 7764
No 34
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.0029 Score=53.58 Aligned_cols=96 Identities=18% Similarity=0.220 Sum_probs=68.3
Q ss_pred ccEEEEcCeeecC------CCccccccceEEeeeeec-ChHHHHHHHhCCCccceeeeecCC---CcCeEEEccCCcceE
Q 041569 118 LTSLKLVGCKLEL------PSFTCAHLKKLLLSEFPL-NDRELHHLISKCPLLEDLSISHCH---SLGRIMISSNKLEHL 187 (285)
Q Consensus 118 L~~L~L~~~~~~~------~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~---~~~~~~i~~~~L~~L 187 (285)
+.-|.+.+|.+.. .+..+..++.|+|.++.+ +++.+..++.+.|+|+.|+++... .+..+..+..+|+.|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 4456666776654 334578999999999988 668999999999999999999654 233333344788888
Q ss_pred EEeecC-CC---ceEEEeCCCccEEEEeeC
Q 041569 188 LISSCY-GL---NALDVDAPRLLSFIFDLN 213 (285)
Q Consensus 188 ~l~~~~-~~---~~~~~~~p~L~~l~~~~~ 213 (285)
.+-+.+ .+ ++.--..|.++.|+.+.+
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 888876 22 222235677777777666
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.05 E-value=0.0059 Score=39.12 Aligned_cols=55 Identities=27% Similarity=0.286 Sum_probs=40.2
Q ss_pred CCceEEEEeeeCCCccccCCcccc-CcCCccEEEEcCeeecC----CCccccccceEEeeeeec
Q 041569 90 GLEVLDFMVIADENTYYALPQTIF-SAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPL 148 (285)
Q Consensus 90 ~l~~L~l~~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~ 148 (285)
+++.+++.. + ....+|...+ .+++|+.|++++|.+.. ...++++|++|++.++.+
T Consensus 2 ~L~~L~l~~--n--~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSN--N--KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETS--S--TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCC--C--CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 566676655 2 3445665554 48999999999998765 345799999999988753
No 36
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.00 E-value=0.0013 Score=52.43 Aligned_cols=46 Identities=26% Similarity=0.333 Sum_probs=30.5
Q ss_pred cccccceEEeeee-ecChHHHHHHHhCCCccceeeeecCCCcCeEEE
Q 041569 134 TCAHLKKLLLSEF-PLNDRELHHLISKCPLLEDLSISHCHSLGRIMI 179 (285)
Q Consensus 134 ~~~~L~~L~L~~~-~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i 179 (285)
+++.++.|.+.+| .++|..++.+-.-.|+|+.|++++|+.+++-.+
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL 169 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL 169 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH
Confidence 4566667777777 347777777666677777777777776654333
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.87 E-value=0.0016 Score=55.12 Aligned_cols=40 Identities=18% Similarity=0.080 Sum_probs=19.7
Q ss_pred HCCCceEEEEeeeCCC-----ccccCCccccCcCCccEEEEcCee
Q 041569 88 ENGLEVLDFMVIADEN-----TYYALPQTIFSAKLLTSLKLVGCK 127 (285)
Q Consensus 88 ~~~l~~L~l~~~~~~~-----~~~~l~~~~~~~~~L~~L~L~~~~ 127 (285)
...+.-+.++...... ....+|..+....+|+.++++.|.
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~ 225 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS 225 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc
Confidence 3456666655432222 222333333345677777777664
No 38
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=95.69 E-value=0.0066 Score=53.54 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=33.3
Q ss_pred cCCCCCHHHHHHHhcCCCh-hhHHhhhhcccchhhccc
Q 041569 7 QISDLPPSIIHHIMTYLSA-KEVTRTSILSTSWNQFQN 43 (285)
Q Consensus 7 ~~~~LP~~il~~I~s~L~~-~~~~~~~~vskrWr~lw~ 43 (285)
.|++||+|+|..|..+|+. -|.+|.+.|||.||..-.
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 4899999999999999964 899999999999998643
No 39
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.68 E-value=0.018 Score=51.55 Aligned_cols=89 Identities=21% Similarity=0.209 Sum_probs=38.7
Q ss_pred CccEEEEcCeee-cCCCcc-ccccceEEeeeee-cChHHHHHHHhCCCccceeeeecCCCcCeEEEccCCcceEEEeecC
Q 041569 117 LLTSLKLVGCKL-ELPSFT-CAHLKKLLLSEFP-LNDRELHHLISKCPLLEDLSISHCHSLGRIMISSNKLEHLLISSCY 193 (285)
Q Consensus 117 ~L~~L~L~~~~~-~~~~~~-~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~~~L~~L~l~~~~ 193 (285)
+|++|.+++|.- ...+.. .++|++|.+++|. +. . --+.|+.|++.+ .....+..-.++|+.|.+....
T Consensus 73 sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~-----s---LP~sLe~L~L~~-n~~~~L~~LPssLk~L~I~~~n 143 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEIS-----G---LPESVRSLEIKG-SATDSIKNVPNGLTSLSINSYN 143 (426)
T ss_pred CCcEEEccCCCCcccCCchhhhhhhheEccCccccc-----c---cccccceEEeCC-CCCcccccCcchHhheeccccc
Confidence 567777766532 111111 2456666666652 21 1 124566666542 2222222222456666654321
Q ss_pred CCce--EE-EeCCCccEEEEeeCc
Q 041569 194 GLNA--LD-VDAPRLLSFIFDLNP 214 (285)
Q Consensus 194 ~~~~--~~-~~~p~L~~l~~~~~~ 214 (285)
.... +. .-.++|++|.+.++.
T Consensus 144 ~~~~~~lp~~LPsSLk~L~Is~c~ 167 (426)
T PRK15386 144 PENQARIDNLISPSLKTLSLTGCS 167 (426)
T ss_pred cccccccccccCCcccEEEecCCC
Confidence 1100 01 112456666666654
No 40
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.49 E-value=0.0046 Score=52.98 Aligned_cols=37 Identities=27% Similarity=0.576 Sum_probs=34.9
Q ss_pred CCcCCCCC----HHHHHHHhcCCChhhHHhhhhcccchhhc
Q 041569 5 VDQISDLP----PSIIHHIMTYLSAKEVTRTSILSTSWNQF 41 (285)
Q Consensus 5 ~d~~~~LP----~~il~~I~s~L~~~~~~~~~~vskrWr~l 41 (285)
.|.+..|| ++|...||+||+..++..+-.|||+|+++
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV 112 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 47899999 99999999999999999999999999975
No 41
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.35 E-value=0.011 Score=35.18 Aligned_cols=35 Identities=34% Similarity=0.408 Sum_probs=18.5
Q ss_pred cccceEEeeeeecChHHHHHHHhCCCccceeeeecCC
Q 041569 136 AHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCH 172 (285)
Q Consensus 136 ~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~ 172 (285)
++|++|++.++.+++ +...++.||+|+.|+++++.
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence 345666666665532 22235566666666666663
No 42
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=95.30 E-value=0.0037 Score=60.25 Aligned_cols=96 Identities=21% Similarity=0.160 Sum_probs=51.9
Q ss_pred cCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeE-EEcc-CCcceEE
Q 041569 115 AKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRI-MISS-NKLEHLL 188 (285)
Q Consensus 115 ~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~-~i~~-~~L~~L~ 188 (285)
.++|+.|+|+.+.+.. ....++.|+.|+|+|+..+.-. .-+..|+.|++|...+.. +..+ .+.. ++|+.++
T Consensus 382 ~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp--~tva~~~~L~tL~ahsN~-l~~fPe~~~l~qL~~lD 458 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP--DTVANLGRLHTLRAHSNQ-LLSFPELAQLPQLKVLD 458 (1081)
T ss_pred ccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh--HHHHhhhhhHHHhhcCCc-eeechhhhhcCcceEEe
Confidence 3566666666665443 2234566666666666552211 224456666666554432 1111 2222 7777887
Q ss_pred EeecCCCceEEE----eCCCccEEEEeeCc
Q 041569 189 ISSCYGLNALDV----DAPRLLSFIFDLNP 214 (285)
Q Consensus 189 l~~~~~~~~~~~----~~p~L~~l~~~~~~ 214 (285)
++.. .+..+.+ ..|+|++|+++|+.
T Consensus 459 lS~N-~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 459 LSCN-NLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred cccc-hhhhhhhhhhCCCcccceeeccCCc
Confidence 7766 3443332 22688888888876
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.28 E-value=0.017 Score=34.43 Aligned_cols=34 Identities=29% Similarity=0.348 Sum_probs=23.4
Q ss_pred CCccEEEEcCeeecC--C-CccccccceEEeeeeecC
Q 041569 116 KLLTSLKLVGCKLEL--P-SFTCAHLKKLLLSEFPLN 149 (285)
Q Consensus 116 ~~L~~L~L~~~~~~~--~-~~~~~~L~~L~L~~~~~~ 149 (285)
++|++|.++++.+.. . ...+++|++|+++++.++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 467888888887766 2 346888888888888764
No 44
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.21 E-value=0.014 Score=50.37 Aligned_cols=104 Identities=22% Similarity=0.241 Sum_probs=74.4
Q ss_pred ccCcCCccEEEEcCeeecC--------CCccccccceEEeeeeecCh---HHHHHHHhCCCccceeeeecCCCcC-----
Q 041569 112 IFSAKLLTSLKLVGCKLEL--------PSFTCAHLKKLLLSEFPLND---RELHHLISKCPLLEDLSISHCHSLG----- 175 (285)
Q Consensus 112 ~~~~~~L~~L~L~~~~~~~--------~~~~~~~L~~L~L~~~~~~~---~~l~~l~~~cp~Le~L~l~~c~~~~----- 175 (285)
+..+++|+.+++..+.+.+ ....||+|+.|+|..+.|+. ..+...++.+|+|++|.+++|---+
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA 260 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence 3447899999999887655 23569999999999998843 4567778889999999999994211
Q ss_pred ---eEEEccCCcceEEEeecC-CC---ceE--E-EeCCCccEEEEeeCcE
Q 041569 176 ---RIMISSNKLEHLLISSCY-GL---NAL--D-VDAPRLLSFIFDLNPI 215 (285)
Q Consensus 176 ---~~~i~~~~L~~L~l~~~~-~~---~~~--~-~~~p~L~~l~~~~~~~ 215 (285)
.+.-..|+|+.|.+.+|. .. ..+ . -.-|.|+.|.++|+..
T Consensus 261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 111224899999999987 00 000 1 1368888888888864
No 45
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.99 E-value=0.0058 Score=50.63 Aligned_cols=64 Identities=30% Similarity=0.281 Sum_probs=35.5
Q ss_pred HHHHHhCCCccceeeeecCCCcCeEEEcc-CCcceEEEeecC-----CCceEEEeCCCccEEEEeeCcEe
Q 041569 153 LHHLISKCPLLEDLSISHCHSLGRIMISS-NKLEHLLISSCY-----GLNALDVDAPRLLSFIFDLNPIP 216 (285)
Q Consensus 153 l~~l~~~cp~Le~L~l~~c~~~~~~~i~~-~~L~~L~l~~~~-----~~~~~~~~~p~L~~l~~~~~~~~ 216 (285)
+..+...+-.|+.|++.+|...+....+. |+||.|.++..+ .+..+...+|+|++++++|+.+.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 33334445555555555554333223333 566666666652 33444446688888888888754
No 46
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.66 E-value=0.074 Score=47.73 Aligned_cols=71 Identities=15% Similarity=0.266 Sum_probs=44.1
Q ss_pred ccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEE-EccCCcceEEEeecCCCceEEEeCCCccEEEEeeC
Q 041569 135 CAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIM-ISSNKLEHLLISSCYGLNALDVDAPRLLSFIFDLN 213 (285)
Q Consensus 135 ~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~-i~~~~L~~L~l~~~~~~~~~~~~~p~L~~l~~~~~ 213 (285)
++++++|.+++|.++.-. .--++|++|.+.+|..++.+. .-.++|++|.+.+|..+..+ .+.|++|.+.+.
T Consensus 51 ~~~l~~L~Is~c~L~sLP-----~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sL---P~sLe~L~L~~n 122 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP-----VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGL---PESVRSLEIKGS 122 (426)
T ss_pred hcCCCEEEeCCCCCcccC-----CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccccc---ccccceEEeCCC
Confidence 678888888888542211 112358888888887765432 11268888888888544322 245666666544
No 47
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.56 E-value=0.037 Score=44.38 Aligned_cols=57 Identities=23% Similarity=0.298 Sum_probs=33.2
Q ss_pred cCCccEEEEcCeeecC----CCccccccceEEeeeeec-ChHHHHHHHhCCCccceeeeecCC
Q 041569 115 AKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPL-NDRELHHLISKCPLLEDLSISHCH 172 (285)
Q Consensus 115 ~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~ 172 (285)
.++|..|.|.++.+.. ...-+|+|+.|.|.++++ .-.+++. +..||.|+.|.+-+.+
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNP 124 (233)
T ss_pred ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCc
Confidence 4566677777665544 223356677777776655 2233333 4466777777666654
No 48
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=94.44 E-value=0.053 Score=53.72 Aligned_cols=95 Identities=24% Similarity=0.252 Sum_probs=61.3
Q ss_pred cCCccEEEEcCeeecC--CCccccccceEEeeeeec-ChHHHHHHHhCCCccceeeeecCCCcCeEE--Ecc-CCcceEE
Q 041569 115 AKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPL-NDRELHHLISKCPLLEDLSISHCHSLGRIM--ISS-NKLEHLL 188 (285)
Q Consensus 115 ~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~--i~~-~~L~~L~ 188 (285)
....+.+.+.++.+.. ....+|.|++|-+.++.. -...-...+...|.|.+|++++|.....+. |.. -+||.|+
T Consensus 522 ~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred hhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 3566777777765544 445678999999998852 111112224567999999999987766543 332 6888888
Q ss_pred EeecCCCceEEEeCCCccEEEE
Q 041569 189 ISSCYGLNALDVDAPRLLSFIF 210 (285)
Q Consensus 189 l~~~~~~~~~~~~~p~L~~l~~ 210 (285)
+.++ .+..++....+|+.|.+
T Consensus 602 L~~t-~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 602 LSDT-GISHLPSGLGNLKKLIY 622 (889)
T ss_pred ccCC-CccccchHHHHHHhhhe
Confidence 8887 45555555555554443
No 49
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.38 E-value=0.004 Score=49.72 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=54.2
Q ss_pred cceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEE-----ccCCcceEEEeecCCCceEEE----eCCCccEE
Q 041569 138 LKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMI-----SSNKLEHLLISSCYGLNALDV----DAPRLLSF 208 (285)
Q Consensus 138 L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i-----~~~~L~~L~l~~~~~~~~~~~----~~p~L~~l 208 (285)
++..+-+++.+..++++. +..++.++.|.+.+|..++++.+ .+++|+.|++++|+.+++-.+ ..++|+.|
T Consensus 103 IeaVDAsds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred EEEEecCCchHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 566667777788888888 67899999999999987776543 237888888888875544332 35666666
Q ss_pred EEeeC
Q 041569 209 IFDLN 213 (285)
Q Consensus 209 ~~~~~ 213 (285)
.+.+-
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 66553
No 50
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.37 E-value=0.004 Score=51.56 Aligned_cols=99 Identities=23% Similarity=0.103 Sum_probs=56.5
Q ss_pred cCCccEEEEcCeeecC--CCccccccceEEeeeeec-ChHHHHHHHhCCCccceeeeecCCC--cCeEEEc-c-CCcceE
Q 041569 115 AKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPL-NDRELHHLISKCPLLEDLSISHCHS--LGRIMIS-S-NKLEHL 187 (285)
Q Consensus 115 ~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~--~~~~~i~-~-~~L~~L 187 (285)
...|+.|++.++.+.. ....+|+|++|.++.+.+ ...++..++..||+|.+|++++..- +..+.-. . ++|++|
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 3556666677666654 223467888888887733 2344555566778888888887641 1111111 1 567777
Q ss_pred EEeecCCCc------eEEEeCCCccEEEEeeC
Q 041569 188 LISSCYGLN------ALDVDAPRLLSFIFDLN 213 (285)
Q Consensus 188 ~l~~~~~~~------~~~~~~p~L~~l~~~~~ 213 (285)
.+..|.... .+..-+|.|++|+-...
T Consensus 122 dl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 122 DLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 777776211 11123566666654443
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.97 E-value=0.14 Score=41.17 Aligned_cols=96 Identities=22% Similarity=0.254 Sum_probs=67.1
Q ss_pred CCccEEEEcCeeecC--CCccccccceEEeeeeecC--hHHHHHHHhCCCccceeeeecCC--CcCeEE--EccCCcceE
Q 041569 116 KLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLN--DRELHHLISKCPLLEDLSISHCH--SLGRIM--ISSNKLEHL 187 (285)
Q Consensus 116 ~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~--~~~l~~l~~~cp~Le~L~l~~c~--~~~~~~--i~~~~L~~L 187 (285)
.+...++|+++.+.. ....++.|.+|.|..++++ +..+..+ .|+|..|.+.+.. .+.++. ..+|+|++|
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~---~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTF---LPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhh---ccccceEEecCcchhhhhhcchhccCCcccee
Confidence 455667777776554 3346889999999999883 3556554 6999999999864 233322 234899999
Q ss_pred EEeecC-----CCc-eEEEeCCCccEEEEeeCc
Q 041569 188 LISSCY-----GLN-ALDVDAPRLLSFIFDLNP 214 (285)
Q Consensus 188 ~l~~~~-----~~~-~~~~~~p~L~~l~~~~~~ 214 (285)
.+-+.+ +.. .+.-..|+|+.|++.+..
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 998876 222 333478999999987754
No 52
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=93.76 E-value=0.023 Score=48.30 Aligned_cols=36 Identities=19% Similarity=0.405 Sum_probs=30.6
Q ss_pred CcCCCCCHHHHHHHhcC-----CChhhHHhhhhcccchhhc
Q 041569 6 DQISDLPPSIIHHIMTY-----LSAKEVTRTSILSTSWNQF 41 (285)
Q Consensus 6 d~~~~LP~~il~~I~s~-----L~~~~~~~~~~vskrWr~l 41 (285)
+.|..|||||+..||.. |+.+++.++++|||.|+..
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~ 145 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC 145 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence 44788999999999975 4569999999999999865
No 53
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=93.75 E-value=0.032 Score=28.95 Aligned_cols=18 Identities=33% Similarity=0.779 Sum_probs=15.1
Q ss_pred CCccceeeeecCCCcCeE
Q 041569 160 CPLLEDLSISHCHSLGRI 177 (285)
Q Consensus 160 cp~Le~L~l~~c~~~~~~ 177 (285)
||+|+.|++++|..+++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 789999999999877653
No 54
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=93.25 E-value=0.0034 Score=48.99 Aligned_cols=112 Identities=23% Similarity=0.164 Sum_probs=54.3
Q ss_pred ccccCCccccCcCCccEEEEcCeeecC---CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEc
Q 041569 104 TYYALPQTIFSAKLLTSLKLVGCKLEL---PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMIS 180 (285)
Q Consensus 104 ~~~~l~~~~~~~~~L~~L~L~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~ 180 (285)
.-..+|..+.+.+.|+.|+++-+++.. ...+||.|+.|+|..+..++..+-.=+-....|..|.+++.+ ++.+.-.
T Consensus 67 qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d 145 (264)
T KOG0617|consen 67 QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD 145 (264)
T ss_pred hhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh
Confidence 344566666666777777776665544 234567777777766655433321111112334555555432 2222212
Q ss_pred cCCcceEEEeecC--CCceEE--E-eCCCccEEEEeeCcEe
Q 041569 181 SNKLEHLLISSCY--GLNALD--V-DAPRLLSFIFDLNPIP 216 (285)
Q Consensus 181 ~~~L~~L~l~~~~--~~~~~~--~-~~p~L~~l~~~~~~~~ 216 (285)
..+|+.|.|-.-. ++-++. + ....|+.|++.|+...
T Consensus 146 vg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 146 VGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred hhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee
Confidence 2333333333222 222221 1 3456777788877643
No 55
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=93.21 E-value=0.067 Score=27.71 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=19.2
Q ss_pred ccccceEEeeee-ecChHHHHHHHh
Q 041569 135 CAHLKKLLLSEF-PLNDRELHHLIS 158 (285)
Q Consensus 135 ~~~L~~L~L~~~-~~~~~~l~~l~~ 158 (285)
||+|++|+|++| .++|.++..+..
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 578889999998 579998887653
No 56
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=92.91 E-value=0.0079 Score=58.12 Aligned_cols=134 Identities=22% Similarity=0.206 Sum_probs=69.9
Q ss_pred CCccEEEEcCeeecC----CCccccccceEEeeeeec---ChHHHHHHHhCCCccceeeeecCCCcCeEEEcc---CCcc
Q 041569 116 KLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPL---NDRELHHLISKCPLLEDLSISHCHSLGRIMISS---NKLE 185 (285)
Q Consensus 116 ~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~---~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~---~~L~ 185 (285)
+.|+.|.+.++.+.+ ...++++||.|+|..+.+ .+..+ .+++.||+|.++|.. ++.+.... +.|+
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~----~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~ 433 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKL----RKLEELEELNLSGNK-LTTLPDTVANLGRLH 433 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHH----hchHHhHHHhcccch-hhhhhHHHHhhhhhH
Confidence 456666666666655 224577777777777743 44443 345777777777754 33332221 3344
Q ss_pred eEEEeecCCCceEE-E-eCCCccEEEEeeCcEe------eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEE
Q 041569 186 HLLISSCYGLNALD-V-DAPRLLSFIFDLNPIP------IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERL 257 (285)
Q Consensus 186 ~L~l~~~~~~~~~~-~-~~p~L~~l~~~~~~~~------~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L 257 (285)
.|.-... .+..+. + ..|.|+.++++.+... ....|.|++++++.+....++. +.+..+.++...
T Consensus 434 tL~ahsN-~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~-------~~l~~l~~l~~~ 505 (1081)
T KOG0618|consen 434 TLRAHSN-QLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDH-------KTLKVLKSLSQM 505 (1081)
T ss_pred HHhhcCC-ceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccch-------hhhHHhhhhhhe
Confidence 4333222 122221 2 4577777777776521 1122577877777643322222 444555555555
Q ss_pred EEEeC
Q 041569 258 CIDFS 262 (285)
Q Consensus 258 ~L~~~ 262 (285)
+++..
T Consensus 506 ~i~~~ 510 (1081)
T KOG0618|consen 506 DITLN 510 (1081)
T ss_pred ecccC
Confidence 55554
No 57
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=92.22 E-value=0.013 Score=45.87 Aligned_cols=56 Identities=29% Similarity=0.321 Sum_probs=32.9
Q ss_pred ccCcCCccEEEEcCeeecC---CCccccccceEEeeeeecChHHHHHHHhCCCccceeeee
Q 041569 112 IFSAKLLTSLKLVGCKLEL---PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSIS 169 (285)
Q Consensus 112 ~~~~~~L~~L~L~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~ 169 (285)
++..+++..|.|+.+.+.. ..+.+.+|+.|+++++.+.+ +-.-++..|+|+.|+++
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~--lp~~issl~klr~lnvg 87 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVG 87 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecc
Confidence 4556666777777766544 22356677777777665522 22225556667766665
No 58
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=91.85 E-value=0.061 Score=48.29 Aligned_cols=95 Identities=22% Similarity=0.207 Sum_probs=60.4
Q ss_pred CCccEEEEcCeeecC--CCcc-c-cccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEE--ccCCcceEEE
Q 041569 116 KLLTSLKLVGCKLEL--PSFT-C-AHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMI--SSNKLEHLLI 189 (285)
Q Consensus 116 ~~L~~L~L~~~~~~~--~~~~-~-~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i--~~~~L~~L~l 189 (285)
+.+..|.+.++.+.. .... . ++|+.|++.+..+.+.. .-+..+|+|+.|+++++.-.+-... ..+.|+.|.+
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~--~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP--SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhh--hhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 567888888776655 2223 3 27888888888764321 2245688899998888863222222 3477888888
Q ss_pred eecCCCceEEE--eCCC-ccEEEEeeC
Q 041569 190 SSCYGLNALDV--DAPR-LLSFIFDLN 213 (285)
Q Consensus 190 ~~~~~~~~~~~--~~p~-L~~l~~~~~ 213 (285)
++. .+..+.- ..++ |+++.+.+.
T Consensus 194 s~N-~i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 194 SGN-KISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred cCC-ccccCchhhhhhhhhhhhhhcCC
Confidence 877 3444443 2444 888887777
No 59
>PLN03150 hypothetical protein; Provisional
Probab=91.82 E-value=0.14 Score=49.08 Aligned_cols=75 Identities=20% Similarity=0.153 Sum_probs=47.2
Q ss_pred ccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeE--EEcc-CCcceEEEe
Q 041569 118 LTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRI--MISS-NKLEHLLIS 190 (285)
Q Consensus 118 L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~--~i~~-~~L~~L~l~ 190 (285)
++.|+|+++.+.. ....+++|+.|+|.++.+... +-..+..+++|+.|+++++.-...+ .+.. ++|+.|++.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 6777888776653 123578888888888766321 2222566788888888877532221 1222 678888888
Q ss_pred ecC
Q 041569 191 SCY 193 (285)
Q Consensus 191 ~~~ 193 (285)
++.
T Consensus 499 ~N~ 501 (623)
T PLN03150 499 GNS 501 (623)
T ss_pred CCc
Confidence 774
No 60
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=91.17 E-value=0.015 Score=55.00 Aligned_cols=39 Identities=28% Similarity=0.422 Sum_probs=24.3
Q ss_pred CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeec
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLE 129 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 129 (285)
...+.+.+.-. ....+.-|..++-...|+.|.|.+|.+.
T Consensus 84 qkt~~lkl~~~--pa~~pt~pi~ifpF~sLr~LElrg~~L~ 122 (1096)
T KOG1859|consen 84 QKTKVLKLLPS--PARDPTEPISIFPFRSLRVLELRGCDLS 122 (1096)
T ss_pred hhheeeeeccc--CCCCCCCCceeccccceeeEEecCcchh
Confidence 34455554432 2222333777888889999999998754
No 61
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=90.28 E-value=0.73 Score=39.54 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=12.9
Q ss_pred CCCceEEEEEeCCCccCCCchhhhhhhh
Q 041569 251 SSQIERLCIDFSSVETNSEDATLHFLYK 278 (285)
Q Consensus 251 ~~~L~~L~L~~~~~~~~~~~~~f~~L~~ 278 (285)
.|.++.|.++.+.+...++...+.+|.+
T Consensus 306 ~Pkir~L~lS~N~i~~v~nLa~L~~L~~ 333 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTVQNLAELPQLQL 333 (490)
T ss_pred ccceeEEeccccceeeehhhhhcccceE
Confidence 3555555555555544433333333333
No 62
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=90.18 E-value=0.13 Score=48.13 Aligned_cols=39 Identities=23% Similarity=0.542 Sum_probs=36.5
Q ss_pred CCCCcCCCCCHHHHHHHhcCCChhhHHhhhhcccchhhc
Q 041569 3 ETVDQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQF 41 (285)
Q Consensus 3 ~~~d~~~~LP~~il~~I~s~L~~~~~~~~~~vskrWr~l 41 (285)
...|.++.||-++..+|+++|+.++.+.+++||+.|+.+
T Consensus 103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 356899999999999999999999999999999999876
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.45 E-value=0.024 Score=47.76 Aligned_cols=12 Identities=17% Similarity=0.271 Sum_probs=6.0
Q ss_pred HhccCCCceEEE
Q 041569 247 FLGASSQIERLC 258 (285)
Q Consensus 247 ~l~~~~~L~~L~ 258 (285)
.+..+|+|++|+
T Consensus 112 VLR~LPnLkKLD 123 (388)
T KOG2123|consen 112 VLRVLPNLKKLD 123 (388)
T ss_pred HHHHcccchhcc
Confidence 444555555543
No 64
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.29 E-value=0.21 Score=25.15 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=12.4
Q ss_pred ccccceEEeeeeecChHHHHHH
Q 041569 135 CAHLKKLLLSEFPLNDRELHHL 156 (285)
Q Consensus 135 ~~~L~~L~L~~~~~~~~~l~~l 156 (285)
+++|++|+|+++.+++++...+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3566777777777766666554
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.23 E-value=0.082 Score=44.63 Aligned_cols=58 Identities=28% Similarity=0.330 Sum_probs=41.6
Q ss_pred CcCCccEEEEcCeeecC--CCccccccceEEeeeeecC-hHHHHHHHhCCCccceeeeecCC
Q 041569 114 SAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLN-DRELHHLISKCPLLEDLSISHCH 172 (285)
Q Consensus 114 ~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~-~~~l~~l~~~cp~Le~L~l~~c~ 172 (285)
..+.|+.|.|+-+.+.. +...|.+|++|.|..+.+. -..+.. +.+.|+|+.|.|...+
T Consensus 39 kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLWLDENP 99 (388)
T ss_pred hcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHhhccCC
Confidence 35778888888877665 3456888888888888773 344544 6678888888887654
No 66
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=88.09 E-value=0.03 Score=53.15 Aligned_cols=151 Identities=21% Similarity=0.230 Sum_probs=78.5
Q ss_pred CCccEEEEcCeeecC-----CCccccccceEEeeeeec-ChHHHHHHHhCCCccceeee-----------ecCCC-c---
Q 041569 116 KLLTSLKLVGCKLEL-----PSFTCAHLKKLLLSEFPL-NDRELHHLISKCPLLEDLSI-----------SHCHS-L--- 174 (285)
Q Consensus 116 ~~L~~L~L~~~~~~~-----~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l-----------~~c~~-~--- 174 (285)
++++.|++-...-.. ..+.|..|++|.|.+|.+ +..++..+- ..||+|.- ..|.+ +
T Consensus 84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr---~qLe~LIC~~Sl~Al~~v~ascggd~~ns 160 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELR---HQLEKLICHNSLDALRHVFASCGGDISNS 160 (1096)
T ss_pred hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHH---HhhhhhhhhccHHHHHHHHHHhccccccc
Confidence 566666666443222 335799999999999987 333333331 23333311 11210 0
Q ss_pred --------------CeEEEcc-----CCcceEEEeecCCCceEE-E-eCCCccEEEEeeCcEeee-----cCCCccccee
Q 041569 175 --------------GRIMISS-----NKLEHLLISSCYGLNALD-V-DAPRLLSFIFDLNPIPII-----STNALCPWNV 228 (285)
Q Consensus 175 --------------~~~~i~~-----~~L~~L~l~~~~~~~~~~-~-~~p~L~~l~~~~~~~~~~-----~~~~L~~l~i 228 (285)
.-..++. +.|++|+++... +..+. + .+|.|++|+++-+..... .+-.|..+++
T Consensus 161 ~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk-~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 161 PVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNK-FTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh-hhhhHHHHhcccccccccccchhccccccchhhhhheeeee
Confidence 0001111 677777777764 22222 2 677888888776542110 1113555565
Q ss_pred ccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCccCCCchhhhhhhhe
Q 041569 229 TLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKL 279 (285)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~f~~L~~L 279 (285)
..+.+... .-+.++.+|+.|+++.+-+..-++..++..|..|
T Consensus 240 rnN~l~tL---------~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L 281 (1096)
T KOG1859|consen 240 RNNALTTL---------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSL 281 (1096)
T ss_pred cccHHHhh---------hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHH
Confidence 54322111 2234577888888888777664444444444444
No 67
>PLN03150 hypothetical protein; Provisional
Probab=86.87 E-value=0.73 Score=44.19 Aligned_cols=87 Identities=17% Similarity=0.125 Sum_probs=59.9
Q ss_pred ccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEE--E
Q 041569 106 YALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIM--I 179 (285)
Q Consensus 106 ~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~--i 179 (285)
..+|..+..+++|+.|+|++|.+.. ....+++|+.|+|.++.++... -..+..+++|+.|+++++.-...+. +
T Consensus 432 g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i-P~~l~~L~~L~~L~Ls~N~l~g~iP~~l 510 (623)
T PLN03150 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PESLGQLTSLRILNLNGNSLSGRVPAAL 510 (623)
T ss_pred ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC-chHHhcCCCCCEEECcCCcccccCChHH
Confidence 3567777788999999999998764 2346899999999999885322 2235678999999999885322211 1
Q ss_pred cc--CCcceEEEeecC
Q 041569 180 SS--NKLEHLLISSCY 193 (285)
Q Consensus 180 ~~--~~L~~L~l~~~~ 193 (285)
.. .++..+++.++.
T Consensus 511 ~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 511 GGRLLHRASFNFTDNA 526 (623)
T ss_pred hhccccCceEEecCCc
Confidence 11 344566666554
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=81.73 E-value=1.1 Score=22.05 Aligned_cols=14 Identities=36% Similarity=0.332 Sum_probs=9.5
Q ss_pred CccEEEEcCeeecC
Q 041569 117 LLTSLKLVGCKLEL 130 (285)
Q Consensus 117 ~L~~L~L~~~~~~~ 130 (285)
+|+.|+|++|.+..
T Consensus 1 ~L~~Ldls~n~l~~ 14 (22)
T PF00560_consen 1 NLEYLDLSGNNLTS 14 (22)
T ss_dssp TESEEEETSSEESE
T ss_pred CccEEECCCCcCEe
Confidence 46777777776553
No 69
>PF13013 F-box-like_2: F-box-like domain
Probab=81.59 E-value=0.97 Score=32.63 Aligned_cols=30 Identities=20% Similarity=0.260 Sum_probs=25.5
Q ss_pred cCCCCCHHHHHHHhcCCChhhHHhhhhccc
Q 041569 7 QISDLPPSIIHHIMTYLSAKEVTRTSILST 36 (285)
Q Consensus 7 ~~~~LP~~il~~I~s~L~~~~~~~~~~vsk 36 (285)
.+.+||+||+..||.+-+..+.......|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 367899999999999999988877766665
No 70
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=79.07 E-value=0.59 Score=41.92 Aligned_cols=63 Identities=32% Similarity=0.291 Sum_probs=33.4
Q ss_pred cCCccccCc-CCccEEEEcCeeecC---CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecC
Q 041569 107 ALPQTIFSA-KLLTSLKLVGCKLEL---PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHC 171 (285)
Q Consensus 107 ~l~~~~~~~-~~L~~L~L~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 171 (285)
.++...... ++|+.|+++++.+.. ....+++|+.|.+..+.+++-. ......+.|+.|++++.
T Consensus 130 ~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~--~~~~~~~~L~~L~ls~N 196 (394)
T COG4886 130 DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLP--KLLSNLSNLNNLDLSGN 196 (394)
T ss_pred cCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhh--hhhhhhhhhhheeccCC
Confidence 344443334 266777777665554 2245666777777666553211 11114566666666655
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=79.03 E-value=1.7 Score=19.93 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=6.3
Q ss_pred CCccEEEEcCeee
Q 041569 116 KLLTSLKLVGCKL 128 (285)
Q Consensus 116 ~~L~~L~L~~~~~ 128 (285)
++|+.|++++|.+
T Consensus 1 ~~L~~L~l~~n~L 13 (17)
T PF13504_consen 1 PNLRTLDLSNNRL 13 (17)
T ss_dssp TT-SEEEETSS--
T ss_pred CccCEEECCCCCC
Confidence 3566666666654
No 72
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=78.29 E-value=1 Score=40.30 Aligned_cols=38 Identities=24% Similarity=0.067 Sum_probs=22.7
Q ss_pred cccCcCCccEEEEcCeeecC---CCccccccceEEeeeeec
Q 041569 111 TIFSAKLLTSLKLVGCKLEL---PSFTCAHLKKLLLSEFPL 148 (285)
Q Consensus 111 ~~~~~~~L~~L~L~~~~~~~---~~~~~~~L~~L~L~~~~~ 148 (285)
.+...++|..|+|+++.+.. ...++-.|+.|+++.++|
T Consensus 430 ~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrF 470 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRF 470 (565)
T ss_pred HHHhhhcceeeecccchhhhcchhhhhhhhhheeccccccc
Confidence 33345677777777765554 223455567777776655
No 73
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=77.62 E-value=1.8 Score=30.47 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=22.6
Q ss_pred CcCCCCCHHHHHHHhcCCChhhHHh
Q 041569 6 DQISDLPPSIIHHIMTYLSAKEVTR 30 (285)
Q Consensus 6 d~~~~LP~~il~~I~s~L~~~~~~~ 30 (285)
..|..||.||-..|+++|+..|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 5799999999999999999998754
No 74
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=76.52 E-value=2.2 Score=22.40 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=16.9
Q ss_pred cccceEEeeeeecChHHHHHHH
Q 041569 136 AHLKKLLLSEFPLNDRELHHLI 157 (285)
Q Consensus 136 ~~L~~L~L~~~~~~~~~l~~l~ 157 (285)
++|++|+|+++.+++++...+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 5688888888888887776653
No 75
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=74.15 E-value=2.2 Score=36.24 Aligned_cols=57 Identities=21% Similarity=0.305 Sum_probs=37.7
Q ss_pred CCccEEEEcCeeecC---------CCccccccceEEeeeeecC---hHHHHHHHhCCCccceeeeecCC
Q 041569 116 KLLTSLKLVGCKLEL---------PSFTCAHLKKLLLSEFPLN---DRELHHLISKCPLLEDLSISHCH 172 (285)
Q Consensus 116 ~~L~~L~L~~~~~~~---------~~~~~~~L~~L~L~~~~~~---~~~l~~l~~~cp~Le~L~l~~c~ 172 (285)
.+|+.+++..+.+.+ ..+-+.+|+.|+|+.+.|+ ...+...+..+|.|.+|.+..|-
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 477777777776554 1233677788888877763 33455556667777888777773
No 76
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=72.72 E-value=0.73 Score=41.78 Aligned_cols=97 Identities=21% Similarity=0.078 Sum_probs=49.7
Q ss_pred CcCCccEEEEcCeeecC--C-CccccccceEEeeeeec-ChHHHHHHHhCCCccceeeeecCCCcCeEEEc-cCCcceEE
Q 041569 114 SAKLLTSLKLVGCKLEL--P-SFTCAHLKKLLLSEFPL-NDRELHHLISKCPLLEDLSISHCHSLGRIMIS-SNKLEHLL 188 (285)
Q Consensus 114 ~~~~L~~L~L~~~~~~~--~-~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~-~~~L~~L~ 188 (285)
...+|..|.+.++.+.. . ..++++|+.|+++++.+ +-..+.. ++.|+.|++.++.--.--... ...|+.++
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~----l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLST----LTLLKELNLSGNLISDISGLESLKSLKLLD 168 (414)
T ss_pred cccceeeeeccccchhhcccchhhhhcchheeccccccccccchhh----ccchhhheeccCcchhccCCccchhhhccc
Confidence 34666677777666554 2 24467777777777766 2233333 344777777665411111122 24556666
Q ss_pred EeecC--CCceE-EEeCCCccEEEEeeCc
Q 041569 189 ISSCY--GLNAL-DVDAPRLLSFIFDLNP 214 (285)
Q Consensus 189 l~~~~--~~~~~-~~~~p~L~~l~~~~~~ 214 (285)
+.++. .+... ....++++.+.+.++.
T Consensus 169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 169 LSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred CCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 66554 11110 1234556666665554
No 77
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=66.60 E-value=0.8 Score=40.89 Aligned_cols=107 Identities=21% Similarity=0.217 Sum_probs=54.2
Q ss_pred ccccCCccccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHH-HHHHhCCCccceeeeecCCCcCeEEEc
Q 041569 104 TYYALPQTIFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDREL-HHLISKCPLLEDLSISHCHSLGRIMIS 180 (285)
Q Consensus 104 ~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l-~~l~~~cp~Le~L~l~~c~~~~~~~i~ 180 (285)
....+|+.+....+|..|.|..+.+.. ...+|..|++|+++.+.+. .+ ..+.++.++|-.|++.... ++.....
T Consensus 194 ~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~--~lpae~~~~L~~l~vLDLRdNk-lke~Pde 270 (565)
T KOG0472|consen 194 LLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE--MLPAEHLKHLNSLLVLDLRDNK-LKEVPDE 270 (565)
T ss_pred hhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHH--hhHHHHhcccccceeeeccccc-cccCchH
Confidence 345566666666666666666665443 3345666677666666441 11 1223345666666666543 2222211
Q ss_pred c---CCcceEEEeecCCCceEE--EeCCCccEEEEeeCc
Q 041569 181 S---NKLEHLLISSCYGLNALD--VDAPRLLSFIFDLNP 214 (285)
Q Consensus 181 ~---~~L~~L~l~~~~~~~~~~--~~~p~L~~l~~~~~~ 214 (285)
. .+|.+|++++. ++..+. +..-.|+.|.+.|++
T Consensus 271 ~clLrsL~rLDlSNN-~is~Lp~sLgnlhL~~L~leGNP 308 (565)
T KOG0472|consen 271 ICLLRSLERLDLSNN-DISSLPYSLGNLHLKFLALEGNP 308 (565)
T ss_pred HHHhhhhhhhcccCC-ccccCCcccccceeeehhhcCCc
Confidence 1 45666666665 233322 111145555555554
No 78
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=63.57 E-value=5.6 Score=35.59 Aligned_cols=78 Identities=19% Similarity=0.109 Sum_probs=51.6
Q ss_pred CcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEcc----CCcc
Q 041569 114 SAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISS----NKLE 185 (285)
Q Consensus 114 ~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~----~~L~ 185 (285)
..++|+.|+|+++.+.. .......+++|.|..+.+.. .=..++.+...|+.|++.+.. ++.+.--+ .+|.
T Consensus 272 ~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~-v~~~~f~~ls~L~tL~L~~N~-it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 272 KLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEF-VSSGMFQGLSGLKTLSLYDNQ-ITTVAPGAFQTLFSLS 349 (498)
T ss_pred hcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHH-HHHHhhhccccceeeeecCCe-eEEEecccccccceee
Confidence 36899999999998876 33457788999998886511 112335567889999998864 43332211 5677
Q ss_pred eEEEeecC
Q 041569 186 HLLISSCY 193 (285)
Q Consensus 186 ~L~l~~~~ 193 (285)
+|++-..+
T Consensus 350 ~l~l~~Np 357 (498)
T KOG4237|consen 350 TLNLLSNP 357 (498)
T ss_pred eeehccCc
Confidence 77775543
No 79
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=62.76 E-value=4.1 Score=40.81 Aligned_cols=99 Identities=18% Similarity=0.075 Sum_probs=56.4
Q ss_pred CcCCccEEEEcCee--ecC-C---CccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEcc---CCc
Q 041569 114 SAKLLTSLKLVGCK--LEL-P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISS---NKL 184 (285)
Q Consensus 114 ~~~~L~~L~L~~~~--~~~-~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~---~~L 184 (285)
.|+.|++|-+.++. +.. + ...+|.|+.|+|+++.- ...+-.-++..-+|+.|+++++. +..+...- .+|
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~-l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS-LSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKL 620 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc-cCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhh
Confidence 35678888888774 222 1 34578888888887522 12232335556778888887664 33222111 567
Q ss_pred ceEEEeecCCCceEE---EeCCCccEEEEeeCc
Q 041569 185 EHLLISSCYGLNALD---VDAPRLLSFIFDLNP 214 (285)
Q Consensus 185 ~~L~l~~~~~~~~~~---~~~p~L~~l~~~~~~ 214 (285)
.+|++........+. -..++|++|.+....
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeeccc
Confidence 777777665332221 135677777765543
No 80
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=62.27 E-value=0.72 Score=34.98 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=33.4
Q ss_pred cCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCC
Q 041569 115 AKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCH 172 (285)
Q Consensus 115 ~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~ 172 (285)
...|+..+|+++.+.. ...-||.+++|+|.++.+.+--.+ +...|.|+.|+++..+
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE--~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE--LAAMPALRSLNLRFNP 111 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH--HhhhHHhhhcccccCc
Confidence 3456666677766543 223466777777777766432222 4456777777777655
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=61.14 E-value=1.8 Score=40.14 Aligned_cols=61 Identities=25% Similarity=0.239 Sum_probs=39.0
Q ss_pred ccccccceEEeeeeec-ChHHHHHHHhCCCccceeeeecCC--CcCeEEEc---cCCcceEEEeecC
Q 041569 133 FTCAHLKKLLLSEFPL-NDRELHHLISKCPLLEDLSISHCH--SLGRIMIS---SNKLEHLLISSCY 193 (285)
Q Consensus 133 ~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~--~~~~~~i~---~~~L~~L~l~~~~ 193 (285)
.++|.+..++|+++++ .-+.+..+....|+|..|+|++.. -.....+. -..|++|.+.+.+
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNP 281 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCc
Confidence 4577777777777766 556677777778888888887762 11111222 2567777777765
No 82
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=60.94 E-value=3.4 Score=36.93 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=38.5
Q ss_pred eCCCccEEEEeeCcEe------eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCcc
Q 041569 201 DAPRLLSFIFDLNPIP------IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVET 266 (285)
Q Consensus 201 ~~p~L~~l~~~~~~~~------~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~ 266 (285)
..|+|++++++++.+. +..+..++++.+..+.+..+. ...+.++++|++|+|.-+++..
T Consensus 272 ~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~-------~~~f~~ls~L~tL~L~~N~it~ 336 (498)
T KOG4237|consen 272 KLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVS-------SGMFQGLSGLKTLSLYDNQITT 336 (498)
T ss_pred hcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHH-------HHhhhccccceeeeecCCeeEE
Confidence 3578888888887743 223336666666553332211 2567889999999998877775
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.19 E-value=5.1 Score=37.25 Aligned_cols=12 Identities=42% Similarity=0.340 Sum_probs=5.8
Q ss_pred ccccceEEeeee
Q 041569 135 CAHLKKLLLSEF 146 (285)
Q Consensus 135 ~~~L~~L~L~~~ 146 (285)
.|+|+.|+|+++
T Consensus 243 apklk~L~LS~N 254 (585)
T KOG3763|consen 243 APKLKTLDLSHN 254 (585)
T ss_pred cchhheeecccc
Confidence 444444444444
No 84
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=55.17 E-value=3.1 Score=37.71 Aligned_cols=53 Identities=28% Similarity=0.186 Sum_probs=26.5
Q ss_pred ccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecC
Q 041569 118 LTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHC 171 (285)
Q Consensus 118 L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 171 (285)
|+.|.+.+|.+.. ....+++|+.+++.++.+..-.-.. +..++.|+.+.+.+.
T Consensus 142 L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 142 LKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGN 196 (414)
T ss_pred hhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCC
Confidence 5555555554443 1223556666666666552222111 345666666666654
No 85
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=52.37 E-value=16 Score=31.24 Aligned_cols=154 Identities=16% Similarity=0.088 Sum_probs=79.5
Q ss_pred CccccCcCCccEEEEcCeeecC--------CCccccccceEEeeeeec---ChHHHH----HH-----HhCCCccceeee
Q 041569 109 PQTIFSAKLLTSLKLVGCKLEL--------PSFTCAHLKKLLLSEFPL---NDRELH----HL-----ISKCPLLEDLSI 168 (285)
Q Consensus 109 ~~~~~~~~~L~~L~L~~~~~~~--------~~~~~~~L~~L~L~~~~~---~~~~l~----~l-----~~~cp~Le~L~l 168 (285)
...+..||.|+..+|+.+.|.. ...+-..|++|.+.+|.+ ....+. ++ +..-|.||+...
T Consensus 85 l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 85 LKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 3455678888888888887654 112346778888887744 222222 11 234577777766
Q ss_pred ecCCCcCeE------EEcc-CCcceEEEeecC----CCceEE----EeCCCccEEEEeeCcEeee----------cCCCc
Q 041569 169 SHCHSLGRI------MISS-NKLEHLLISSCY----GLNALD----VDAPRLLSFIFDLNPIPII----------STNAL 223 (285)
Q Consensus 169 ~~c~~~~~~------~i~~-~~L~~L~l~~~~----~~~~~~----~~~p~L~~l~~~~~~~~~~----------~~~~L 223 (285)
.+..-.... ...+ ..|+.+.+.... ++..+. .-+.+|+.|++.++.+... .=+.|
T Consensus 165 grNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 165 GRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred ccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 655411110 1112 467777776654 111111 1356788888877753211 11234
Q ss_pred ccceeccccCCCCChhhHHHHHHHh--ccCCCceEEEEEeCCCc
Q 041569 224 CPWNVTLDCDSNLDCDWFLSLKEFL--GASSQIERLCIDFSSVE 265 (285)
Q Consensus 224 ~~l~i~~~~~~~~~~~~~~~l~~~l--~~~~~L~~L~L~~~~~~ 265 (285)
+++.+....+...+.... ...+ ...|+|..|....+.+.
T Consensus 245 rEL~lnDClls~~G~~~v---~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 245 RELRLNDCLLSNEGVKSV---LRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred hhccccchhhccccHHHH---HHHhhhhcCCCccccccchhhhc
Confidence 566555433333322211 1222 23477777777665554
No 86
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=35.94 E-value=21 Score=17.89 Aligned_cols=20 Identities=5% Similarity=0.089 Sum_probs=14.1
Q ss_pred CCCceEEEEEeCCCccCCCc
Q 041569 251 SSQIERLCIDFSSVETNSED 270 (285)
Q Consensus 251 ~~~L~~L~L~~~~~~~~~~~ 270 (285)
+++|+.|+|+.+.+...+..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 36788888888877765443
No 87
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=35.94 E-value=21 Score=17.89 Aligned_cols=20 Identities=5% Similarity=0.089 Sum_probs=14.1
Q ss_pred CCCceEEEEEeCCCccCCCc
Q 041569 251 SSQIERLCIDFSSVETNSED 270 (285)
Q Consensus 251 ~~~L~~L~L~~~~~~~~~~~ 270 (285)
+++|+.|+|+.+.+...+..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 36788888888877765443
No 88
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=35.36 E-value=8.1 Score=32.55 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=36.7
Q ss_pred CcCCCCCHHHHHHHhcCCCh-hhHHhhhhcccch------hhcccccceeeEeccccc
Q 041569 6 DQISDLPPSIIHHIMTYLSA-KEVTRTSILSTSW------NQFQNSFPILDFDLMNFI 56 (285)
Q Consensus 6 d~~~~LP~~il~~I~s~L~~-~~~~~~~~vskrW------r~lw~~~~~l~~~~~~~~ 56 (285)
--+.+||.+++..|+.+++- +|++.++.|-..- +.+|+..-.+.|....+.
T Consensus 200 ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~ 257 (332)
T KOG3926|consen 200 LTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIH 257 (332)
T ss_pred CCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 35788999999999999985 8888777654322 345777666667665443
No 89
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=29.50 E-value=1.4e+02 Score=21.28 Aligned_cols=51 Identities=20% Similarity=0.348 Sum_probs=20.2
Q ss_pred cCCccEEEEcCee--ecC-CCccccccceEEeeee--ecChHHHHHHHhCCCccceeeee
Q 041569 115 AKLLTSLKLVGCK--LEL-PSFTCAHLKKLLLSEF--PLNDRELHHLISKCPLLEDLSIS 169 (285)
Q Consensus 115 ~~~L~~L~L~~~~--~~~-~~~~~~~L~~L~L~~~--~~~~~~l~~l~~~cp~Le~L~l~ 169 (285)
|.+|+.+.+.... +.. ....+++|+.+.+... .+++ .....|+.|+.+.+.
T Consensus 11 ~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~~~~i~~----~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 11 CSNLESITFPNTIKKIGENAFSNCTSLKSINFPNNLTSIGD----NAFSNCKSLESITFP 66 (129)
T ss_dssp -TT--EEEETST--EE-TTTTTT-TT-SEEEESSTTSCE-T----TTTTT-TT-EEEEET
T ss_pred CCCCCEEEECCCeeEeChhhcccccccccccccccccccce----eeeeccccccccccc
Confidence 5577777766421 111 2234556666666543 1121 123456666666664
No 90
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=27.69 E-value=86 Score=25.87 Aligned_cols=40 Identities=25% Similarity=0.360 Sum_probs=28.1
Q ss_pred ccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCC
Q 041569 133 FTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCH 172 (285)
Q Consensus 133 ~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~ 172 (285)
.+|.+|+.-++.+-.+.-..+..+---|.++|--.+.+|.
T Consensus 168 L~ca~lerADl~gsil~cA~L~~v~~lcaN~eGA~L~gcN 207 (302)
T KOG1665|consen 168 LQCAKLERADLEGSILHCAILREVEMLCANAEGASLKGCN 207 (302)
T ss_pred hhhhhhcccccccchhhhhhhhhhhheecccccccccCcC
Confidence 3567777777777766666666665667888877777775
No 91
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=25.44 E-value=97 Score=19.75 Aligned_cols=30 Identities=30% Similarity=0.443 Sum_probs=21.4
Q ss_pred ceEEeeeeecChHHHHHHHh-----CCCccceeee
Q 041569 139 KKLLLSEFPLNDRELHHLIS-----KCPLLEDLSI 168 (285)
Q Consensus 139 ~~L~L~~~~~~~~~l~~l~~-----~cp~Le~L~l 168 (285)
+.+.+....++.+++..++. ..|+||.|.+
T Consensus 35 ~~i~l~~~~~t~~dln~Flk~W~~G~~~~Le~l~i 69 (70)
T PF07735_consen 35 KKIELWNSKFTNEDLNKFLKHWINGSNPRLEYLEI 69 (70)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHcCCCcCCcEEEE
Confidence 56677777787777766543 4788888765
No 92
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=24.19 E-value=49 Score=17.12 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=12.1
Q ss_pred HHHhCCCccceeeeec
Q 041569 155 HLISKCPLLEDLSISH 170 (285)
Q Consensus 155 ~l~~~cp~Le~L~l~~ 170 (285)
.++..+|+|+.|+...
T Consensus 7 ~Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 7 KVIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHHCCccceecccc
Confidence 4567789999998754
No 93
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=22.98 E-value=25 Score=30.65 Aligned_cols=34 Identities=15% Similarity=0.390 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHhcCCChhhHHhhhhcccchhhc
Q 041569 8 ISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQF 41 (285)
Q Consensus 8 ~~~LP~~il~~I~s~L~~~~~~~~~~vskrWr~l 41 (285)
+..+|++++..|++++..+++.+++.|++|-..+
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~ 41 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKEL 41 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhh
Confidence 4568999999999999999999999999998766
No 94
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=22.81 E-value=9.3 Score=35.93 Aligned_cols=192 Identities=16% Similarity=0.084 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHHHCCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC---CCccccccceEEeeeeecCh
Q 041569 74 GSSPLFDKWIELATENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL---PSFTCAHLKKLLLSEFPLND 150 (285)
Q Consensus 74 ~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~---~~~~~~~L~~L~L~~~~~~~ 150 (285)
......++-+..|...|.-.|...- ...+..+..-.....-...+|+.+++.. .+..|..|+.+.|+.+++
T Consensus 37 s~trsl~r~leeA~~sg~l~Ls~rr----lk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~-- 110 (722)
T KOG0532|consen 37 SYTRSLERALEEAEYSGRLLLSGRR----LKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCI-- 110 (722)
T ss_pred ccchhhhHHHHHHhhhcccccccch----hhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccc--
Q ss_pred HHHHHHHhCCCccceeeeecCCCcCeEEEcc-CCcceEEEeecC---CCceEEEeCCCccEEEEeeCcEeeecCC-----
Q 041569 151 RELHHLISKCPLLEDLSISHCHSLGRIMISS-NKLEHLLISSCY---GLNALDVDAPRLLSFIFDLNPIPIISTN----- 221 (285)
Q Consensus 151 ~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~-~~L~~L~l~~~~---~~~~~~~~~p~L~~l~~~~~~~~~~~~~----- 221 (285)
..+-.-+.....|..|+++....-....-.+ --|+-|-+++.. .-..+. ..+.|..|+.+.+.+.-....
T Consensus 111 r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig-~~~tl~~ld~s~nei~slpsql~~l~ 189 (722)
T KOG0532|consen 111 RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIG-LLPTLAHLDVSKNEIQSLPSQLGYLT 189 (722)
T ss_pred eecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcccc-cchhHHHhhhhhhhhhhchHHhhhHH
Q ss_pred CcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCccCCCchhhhhhhheeecc
Q 041569 222 ALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKLRLWT 283 (285)
Q Consensus 222 ~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~f~~L~~L~l~~ 283 (285)
+|+.+++..+.+..++. ++. +=.|.+|+++.+.+...+.. |-++++|+...
T Consensus 190 slr~l~vrRn~l~~lp~-------El~--~LpLi~lDfScNkis~iPv~--fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 190 SLRDLNVRRNHLEDLPE-------ELC--SLPLIRLDFSCNKISYLPVD--FRKMRHLQVLQ 240 (722)
T ss_pred HHHHHHHhhhhhhhCCH-------HHh--CCceeeeecccCceeecchh--hhhhhhheeee
No 95
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=22.45 E-value=49 Score=27.25 Aligned_cols=72 Identities=15% Similarity=0.246 Sum_probs=42.4
Q ss_pred ccccceEEeeeeec-ChHHHHHHHhCCCccceeeeecCC----CcCeEEEccCCcceEEEeecCCCceEEEeCCCccEEE
Q 041569 135 CAHLKKLLLSEFPL-NDRELHHLISKCPLLEDLSISHCH----SLGRIMISSNKLEHLLISSCYGLNALDVDAPRLLSFI 209 (285)
Q Consensus 135 ~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~----~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~p~L~~l~ 209 (285)
|.+++--.|.+|.| +..++. .+||.-++.+|. .++.+.++...|+.=++.+| ++..-.+.-..|+.-+
T Consensus 195 caN~eGA~L~gcNfedps~~k------aNLeganLkG~~~egs~m~ginLrvA~Lknanle~~-NLrgA~LaGadLencn 267 (302)
T KOG1665|consen 195 CANAEGASLKGCNFEDPSGLK------ANLEGANLKGADMEGSQMTGINLRVATLKNANLENC-NLRGANLAGADLENCN 267 (302)
T ss_pred ecccccccccCcCCCCccchh------ccccccccccccccccccccceeEeccccccccccC-ccccccccCCccccCC
Confidence 56667777788887 334454 578888888885 23444555555666666666 3333333334555555
Q ss_pred EeeC
Q 041569 210 FDLN 213 (285)
Q Consensus 210 ~~~~ 213 (285)
++|.
T Consensus 268 lsG~ 271 (302)
T KOG1665|consen 268 LSGA 271 (302)
T ss_pred CCCc
Confidence 5554
No 96
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=22.16 E-value=1.1e+02 Score=21.97 Aligned_cols=31 Identities=16% Similarity=0.341 Sum_probs=25.8
Q ss_pred CcCCCCCHHHHHHHhcCCChhhHHhhhhccc
Q 041569 6 DQISDLPPSIIHHIMTYLSAKEVTRTSILST 36 (285)
Q Consensus 6 d~~~~LP~~il~~I~s~L~~~~~~~~~~vsk 36 (285)
+.+..+|.+++..|+..+++.++.+.-.-|.
T Consensus 2 ~dvG~~py~ll~piL~~~~~~QL~~iE~~np 32 (109)
T PF06881_consen 2 EDVGDVPYHLLRPILEKCSPEQLRRIEDNNP 32 (109)
T ss_pred CccCCCCHHHHHHHHccCCHHHHHHHHHhCC
Confidence 4577899999999999999999988765543
Done!