Query 041569
Match_columns 285
No_of_seqs 150 out of 1761
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 14:19:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041569.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041569hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 99.8 1.2E-20 3.9E-25 164.1 5.1 245 4-262 5-282 (336)
2 2p1m_B Transport inhibitor res 99.8 5.7E-19 1.9E-23 164.7 10.2 143 4-148 2-168 (594)
3 3ogk_B Coronatine-insensitive 99.7 9.3E-19 3.2E-23 163.3 7.1 169 3-172 4-231 (592)
4 2ast_B S-phase kinase-associat 99.2 1.3E-12 4.4E-17 113.1 -2.7 169 83-263 64-258 (336)
5 4fcg_A Uncharacterized protein 99.1 2.9E-10 1E-14 98.3 8.1 141 83-230 75-238 (328)
6 1fs1_A SKP2 F-BOX, cyclin A/CD 99.0 1.5E-10 5E-15 72.1 3.1 40 3-42 4-43 (53)
7 3e4g_A ATP synthase subunit S, 98.9 1.5E-09 5.1E-14 84.7 5.0 91 104-194 49-151 (176)
8 3zyi_A Leucine-rich repeat-con 98.9 1.1E-09 3.7E-14 98.8 4.3 168 89-268 99-282 (452)
9 3zyj_A Leucine-rich repeat-con 98.8 1.1E-09 3.7E-14 98.5 3.7 166 89-267 88-270 (440)
10 4fmz_A Internalin; leucine ric 98.8 2E-09 6.9E-14 93.4 4.8 76 182-267 177-258 (347)
11 1h6u_A Internalin H; cell adhe 98.8 3E-09 1E-13 91.1 5.7 140 112-265 81-230 (308)
12 4fmz_A Internalin; leucine ric 98.8 2.6E-09 8.9E-14 92.7 5.0 142 115-267 176-326 (347)
13 4fcg_A Uncharacterized protein 98.8 3.8E-09 1.3E-13 91.3 6.0 177 89-281 104-305 (328)
14 3bz5_A Internalin-J, INLJ; leu 98.8 6E-09 2.1E-13 94.2 6.6 140 112-266 102-247 (457)
15 3zyi_A Leucine-rich repeat-con 98.8 4E-09 1.4E-13 95.1 5.2 167 89-267 75-257 (452)
16 2p1m_B Transport inhibitor res 98.8 2.8E-09 9.7E-14 99.0 4.2 83 88-171 129-221 (594)
17 3bz5_A Internalin-J, INLJ; leu 98.8 7.2E-09 2.5E-13 93.7 6.6 159 89-268 64-228 (457)
18 3ogk_B Coronatine-insensitive 98.8 1.3E-08 4.4E-13 94.6 8.4 62 108-170 285-351 (592)
19 2z80_A TOLL-like receptor 2, v 98.8 4.4E-09 1.5E-13 91.6 4.2 37 243-280 268-304 (353)
20 2id5_A Lingo-1, leucine rich r 98.7 8.9E-09 3E-13 93.3 5.8 168 89-268 104-312 (477)
21 3zyj_A Leucine-rich repeat-con 98.7 5.7E-09 1.9E-13 93.8 4.1 166 89-267 64-246 (440)
22 3t6q_A CD180 antigen; protein- 98.7 8.1E-09 2.8E-13 96.3 5.0 119 90-214 279-411 (606)
23 1ozn_A Reticulon 4 receptor; N 98.7 6.2E-09 2.1E-13 87.9 3.4 164 89-265 56-238 (285)
24 1xku_A Decorin; proteoglycan, 98.7 1.5E-08 5.3E-13 87.3 5.9 79 89-171 76-155 (330)
25 2id5_A Lingo-1, leucine rich r 98.7 2.7E-08 9.2E-13 90.1 7.7 163 89-265 80-261 (477)
26 2xwt_C Thyrotropin receptor; s 98.7 1.3E-08 4.6E-13 83.6 5.2 179 90-282 32-234 (239)
27 3o6n_A APL1; leucine-rich repe 98.7 3.7E-08 1.3E-12 86.9 8.3 17 249-265 269-285 (390)
28 2z80_A TOLL-like receptor 2, v 98.7 3E-08 1E-12 86.3 7.2 165 89-266 52-236 (353)
29 1h6t_A Internalin B; cell adhe 98.7 8.2E-09 2.8E-13 87.6 3.5 159 89-266 46-214 (291)
30 1h6u_A Internalin H; cell adhe 98.7 1.6E-08 5.4E-13 86.6 4.9 171 88-280 40-220 (308)
31 2o6q_A Variable lymphocyte rec 98.7 1.6E-08 5.6E-13 84.7 4.8 163 89-265 37-218 (270)
32 1o6v_A Internalin A; bacterial 98.6 3.8E-08 1.3E-12 89.0 6.6 55 114-171 175-231 (466)
33 4ezg_A Putative uncharacterize 98.6 1.6E-08 5.5E-13 80.7 3.7 99 89-193 44-147 (197)
34 3rfs_A Internalin B, repeat mo 98.6 2E-08 6.9E-13 84.3 4.4 163 88-265 40-218 (272)
35 3o53_A Protein LRIM1, AGAP0063 98.6 9.5E-09 3.2E-13 88.2 2.4 170 89-280 34-217 (317)
36 1o6v_A Internalin A; bacterial 98.6 2.5E-08 8.6E-13 90.2 5.2 78 112-192 195-275 (466)
37 4ezg_A Putative uncharacterize 98.6 5.8E-08 2E-12 77.4 6.8 119 89-214 66-192 (197)
38 3oja_A Leucine-rich immune mol 98.6 1.4E-08 4.7E-13 92.5 3.1 169 90-280 35-217 (487)
39 3o6n_A APL1; leucine-rich repe 98.6 1.1E-07 3.6E-12 83.9 8.4 58 202-267 247-310 (390)
40 1ozn_A Reticulon 4 receptor; N 98.6 8.1E-09 2.8E-13 87.2 1.0 177 89-280 32-228 (285)
41 2z81_A CD282 antigen, TOLL-lik 98.6 1.2E-07 4.2E-12 87.2 8.9 164 88-266 309-487 (549)
42 3rfs_A Internalin B, repeat mo 98.6 1.5E-08 5E-13 85.1 2.5 134 89-230 63-214 (272)
43 2o6q_A Variable lymphocyte rec 98.6 3.3E-08 1.1E-12 82.8 4.5 136 89-231 61-215 (270)
44 1m9s_A Internalin B; cell inva 98.6 1.4E-08 4.9E-13 94.7 2.4 160 88-266 42-211 (605)
45 1ogq_A PGIP-2, polygalacturona 98.6 3.5E-08 1.2E-12 84.6 4.4 57 202-265 220-281 (313)
46 1p9a_G Platelet glycoprotein I 98.6 4.3E-08 1.5E-12 83.1 4.9 149 106-268 23-188 (290)
47 3oja_B Anopheles plasmodium-re 98.6 1.2E-07 4E-12 88.5 8.2 16 249-264 251-266 (597)
48 2ft3_A Biglycan; proteoglycan, 98.5 2.5E-08 8.5E-13 86.1 2.8 80 89-172 78-158 (332)
49 3v47_A TOLL-like receptor 5B a 98.5 1.2E-07 4.2E-12 85.1 7.4 77 182-266 299-385 (455)
50 2z81_A CD282 antigen, TOLL-lik 98.5 1E-07 3.6E-12 87.6 7.1 166 89-266 26-210 (549)
51 4glp_A Monocyte differentiatio 98.5 1.8E-08 6.2E-13 86.2 1.8 188 77-279 79-299 (310)
52 2z63_A TOLL-like receptor 4, v 98.5 1.2E-07 4.2E-12 87.5 7.3 116 89-214 282-407 (570)
53 2z66_A Variable lymphocyte rec 98.5 4.8E-09 1.6E-13 89.5 -2.1 164 89-265 78-261 (306)
54 1h6t_A Internalin B; cell adhe 98.5 8.2E-08 2.8E-12 81.4 5.4 114 112-230 86-209 (291)
55 2ca6_A RAN GTPase-activating p 98.5 1.6E-08 5.4E-13 89.2 0.2 173 89-268 94-319 (386)
56 3v47_A TOLL-like receptor 5B a 98.5 9.9E-08 3.4E-12 85.7 5.3 81 89-172 79-165 (455)
57 1m9s_A Internalin B; cell inva 98.5 3.1E-08 1.1E-12 92.5 2.1 135 88-232 64-208 (605)
58 1ogq_A PGIP-2, polygalacturona 98.5 7.9E-08 2.7E-12 82.4 4.3 165 89-265 76-257 (313)
59 3g06_A SSPH2 (leucine-rich rep 98.5 3.4E-07 1.1E-11 85.7 8.3 112 90-214 41-152 (622)
60 1xku_A Decorin; proteoglycan, 98.5 1.1E-07 3.8E-12 81.9 4.6 96 89-193 52-156 (330)
61 3t6q_A CD180 antigen; protein- 98.5 6.1E-08 2.1E-12 90.4 3.2 80 89-172 325-411 (606)
62 3oja_B Anopheles plasmodium-re 98.4 1.1E-07 3.7E-12 88.8 4.5 162 89-267 75-247 (597)
63 3rgz_A Protein brassinosteroid 98.4 3.8E-08 1.3E-12 94.6 1.3 146 111-265 121-282 (768)
64 2z7x_B TOLL-like receptor 1, v 98.4 4.2E-07 1.4E-11 83.1 8.2 165 89-265 302-481 (520)
65 2z66_A Variable lymphocyte rec 98.4 5.4E-08 1.8E-12 82.9 2.1 167 89-266 52-237 (306)
66 3o53_A Protein LRIM1, AGAP0063 98.4 1.1E-07 3.9E-12 81.4 4.0 156 114-281 32-198 (317)
67 2ell_A Acidic leucine-rich nuc 98.4 5.8E-08 2E-12 75.2 2.0 122 89-214 24-158 (168)
68 2z63_A TOLL-like receptor 4, v 98.4 4.2E-07 1.4E-11 83.9 8.0 77 90-172 305-384 (570)
69 1wwl_A Monocyte differentiatio 98.4 3.4E-08 1.1E-12 84.6 0.5 175 88-280 94-299 (312)
70 3vq2_A TLR4, TOLL-like recepto 98.4 2.2E-08 7.6E-13 93.3 -0.8 146 114-266 374-535 (606)
71 3rgz_A Protein brassinosteroid 98.4 1.1E-07 3.8E-12 91.3 3.9 97 114-214 149-258 (768)
72 3g06_A SSPH2 (leucine-rich rep 98.4 4.9E-07 1.7E-11 84.6 8.0 53 160-214 180-232 (622)
73 3m19_A Variable lymphocyte rec 98.4 1.7E-07 5.7E-12 77.6 4.3 140 116-265 35-192 (251)
74 1xeu_A Internalin C; cellular 98.4 1.6E-07 5.3E-12 78.5 3.9 139 113-265 38-185 (263)
75 2z62_A TOLL-like receptor 4, v 98.4 2.2E-07 7.6E-12 77.9 4.8 121 89-215 28-161 (276)
76 3j0a_A TOLL-like receptor 5; m 98.4 4.2E-07 1.4E-11 88.2 7.4 22 248-269 500-521 (844)
77 1p9a_G Platelet glycoprotein I 98.4 7.6E-08 2.6E-12 81.6 1.9 162 89-265 31-208 (290)
78 1ziw_A TOLL-like receptor 3; i 98.4 1.1E-07 3.9E-12 89.8 3.2 79 89-171 381-464 (680)
79 2ca6_A RAN GTPase-activating p 98.4 1E-08 3.5E-13 90.4 -3.9 149 113-266 91-288 (386)
80 1wwl_A Monocyte differentiatio 98.4 2.7E-07 9.1E-12 78.9 4.9 162 89-265 121-309 (312)
81 3vq2_A TLR4, TOLL-like recepto 98.4 2.1E-07 7.1E-12 86.7 4.2 20 247-266 468-487 (606)
82 1z7x_W Ribonuclease inhibitor; 98.4 5.4E-08 1.9E-12 87.5 0.1 84 87-172 26-124 (461)
83 3e4g_A ATP synthase subunit S, 98.3 5.3E-07 1.8E-11 70.2 5.7 84 90-177 62-155 (176)
84 3j0a_A TOLL-like receptor 5; m 98.3 7.5E-07 2.6E-11 86.4 8.1 145 111-265 285-439 (844)
85 2z62_A TOLL-like receptor 4, v 98.3 1.4E-07 4.6E-12 79.2 2.4 164 89-266 52-238 (276)
86 3m19_A Variable lymphocyte rec 98.3 1.8E-07 6.1E-12 77.4 3.0 154 116-280 14-182 (251)
87 2z7x_B TOLL-like receptor 1, v 98.3 6E-07 2E-11 82.1 6.7 153 116-280 302-471 (520)
88 3goz_A Leucine-rich repeat-con 98.3 5.9E-08 2E-12 84.8 -0.3 168 90-264 52-265 (362)
89 4glp_A Monocyte differentiatio 98.3 1.2E-07 4.2E-12 80.9 1.7 164 89-265 117-307 (310)
90 3oja_A Leucine-rich immune mol 98.3 6.5E-07 2.2E-11 81.4 6.6 154 115-281 33-198 (487)
91 4eco_A Uncharacterized protein 98.3 3.5E-07 1.2E-11 86.0 4.8 152 117-280 403-593 (636)
92 1ziw_A TOLL-like receptor 3; i 98.3 1.4E-07 4.7E-12 89.2 1.9 39 134-172 403-441 (680)
93 2xwt_C Thyrotropin receptor; s 98.3 6.3E-07 2.2E-11 73.4 5.7 142 116-267 31-195 (239)
94 3cvr_A Invasion plasmid antige 98.3 8.7E-07 3E-11 82.0 6.6 113 89-214 59-171 (571)
95 1z7x_W Ribonuclease inhibitor; 98.3 9.1E-08 3.1E-12 86.1 -0.2 170 90-266 4-213 (461)
96 2je0_A Acidic leucine-rich nuc 98.3 8.6E-08 3E-12 72.7 -0.5 101 89-193 17-124 (149)
97 2ft3_A Biglycan; proteoglycan, 98.3 1.7E-07 5.7E-12 80.9 0.9 174 89-280 54-267 (332)
98 3a79_B TLR6, VLRB.59, TOLL-lik 98.2 1.6E-06 5.6E-11 80.1 7.5 165 89-265 331-510 (562)
99 2ell_A Acidic leucine-rich nuc 98.2 2.4E-07 8E-12 71.7 1.4 127 115-267 23-162 (168)
100 4eco_A Uncharacterized protein 98.2 1.9E-06 6.4E-11 81.0 7.6 122 89-214 206-364 (636)
101 3goz_A Leucine-rich repeat-con 98.2 1.3E-07 4.3E-12 82.7 -0.4 174 89-266 80-298 (362)
102 4ecn_A Leucine-rich repeat pro 98.2 9.4E-07 3.2E-11 85.7 5.4 134 136-280 673-833 (876)
103 4ecn_A Leucine-rich repeat pro 98.2 2.2E-07 7.5E-12 90.1 0.6 78 89-172 548-630 (876)
104 1jl5_A Outer protein YOPM; leu 98.2 1E-06 3.5E-11 79.4 4.9 98 112-214 191-288 (454)
105 3l2o_B F-box only protein 4; s 98.2 2.3E-07 8E-12 77.3 0.4 35 7-41 4-38 (312)
106 2e31_A FBS1, F-box only protei 98.1 1E-06 3.5E-11 74.1 3.3 36 6-41 49-85 (297)
107 3un9_A NLR family member X1; l 98.1 2.1E-07 7.2E-12 81.7 -1.2 128 83-214 66-222 (372)
108 1xeu_A Internalin C; cellular 98.1 1.9E-07 6.5E-12 78.0 -1.4 138 116-267 19-165 (263)
109 3cvr_A Invasion plasmid antige 98.1 3E-06 1E-10 78.4 6.4 156 89-266 80-244 (571)
110 4g8a_A TOLL-like receptor 4; l 98.1 1.7E-06 5.8E-11 80.6 3.7 95 117-214 53-159 (635)
111 3a79_B TLR6, VLRB.59, TOLL-lik 98.1 1.6E-06 5.5E-11 80.1 3.4 153 116-280 331-500 (562)
112 2je0_A Acidic leucine-rich nuc 98.1 1.8E-07 6.2E-12 70.9 -2.5 55 115-172 16-75 (149)
113 1jl5_A Outer protein YOPM; leu 98.1 1.4E-05 4.7E-10 72.0 9.2 55 112-171 233-287 (454)
114 2ra8_A Uncharacterized protein 98.0 5.3E-06 1.8E-10 72.4 6.1 127 88-214 138-290 (362)
115 1a9n_A U2A', U2A'; complex (nu 98.0 1.5E-06 5.1E-11 67.8 2.0 126 113-265 16-153 (176)
116 4ay9_X Follicle-stimulating ho 98.0 6.7E-06 2.3E-10 71.4 6.2 179 89-281 30-230 (350)
117 2ra8_A Uncharacterized protein 98.0 1.1E-06 3.7E-11 76.8 0.6 77 135-211 138-227 (362)
118 1ds9_A Outer arm dynein; leuci 98.0 3.6E-07 1.2E-11 72.8 -2.8 103 108-214 40-151 (198)
119 2xot_A Amphoterin-induced prot 98.0 3.9E-06 1.3E-10 73.2 3.5 104 106-214 31-147 (361)
120 2v70_A SLIT-2, SLIT homolog 2 97.9 1.9E-06 6.4E-11 69.9 1.3 96 116-214 32-140 (220)
121 3v7d_B Cell division control p 97.9 2.5E-06 8.4E-11 76.3 1.3 39 4-42 11-49 (464)
122 2o6s_A Variable lymphocyte rec 97.8 5E-06 1.7E-10 66.5 1.8 97 115-214 27-135 (208)
123 3e6j_A Variable lymphocyte rec 97.8 7.4E-06 2.5E-10 66.7 2.5 122 105-231 31-169 (229)
124 2xot_A Amphoterin-induced prot 97.8 9.5E-06 3.2E-10 70.7 3.3 120 89-215 39-175 (361)
125 2v9t_B SLIT homolog 2 protein 97.8 1.1E-05 3.7E-10 65.3 3.0 105 105-214 23-139 (220)
126 2v70_A SLIT-2, SLIT homolog 2 97.8 1E-05 3.5E-10 65.5 2.8 121 90-215 33-165 (220)
127 2o6s_A Variable lymphocyte rec 97.7 1E-05 3.5E-10 64.6 2.3 134 89-230 28-174 (208)
128 3e6j_A Variable lymphocyte rec 97.7 1.3E-05 4.5E-10 65.2 2.8 121 89-215 40-171 (229)
129 2ovr_B FBW7, F-BOX/WD repeat p 97.7 1.5E-05 5.3E-10 70.9 3.4 38 4-41 15-52 (445)
130 2v9t_B SLIT homolog 2 protein 97.7 1E-05 3.6E-10 65.4 1.8 120 89-215 32-164 (220)
131 1p22_A F-BOX/WD-repeat protein 97.7 6.7E-06 2.3E-10 73.1 0.5 38 4-41 7-48 (435)
132 3un9_A NLR family member X1; l 97.7 1.3E-06 4.3E-11 76.8 -4.4 57 116-172 126-194 (372)
133 4g8a_A TOLL-like receptor 4; l 97.6 1.4E-05 4.6E-10 74.4 0.9 120 89-215 52-185 (635)
134 1a9n_A U2A', U2A'; complex (nu 97.5 8.9E-06 3.1E-10 63.3 -1.1 118 90-214 20-151 (176)
135 4ay9_X Follicle-stimulating ho 97.4 7.6E-05 2.6E-09 64.6 3.3 165 105-281 21-206 (350)
136 2wfh_A SLIT homolog 2 protein 97.4 0.00013 4.6E-09 57.5 4.1 64 107-171 45-112 (193)
137 1w8a_A SLIT protein; signaling 97.4 0.00019 6.5E-09 56.5 4.9 104 106-214 21-137 (192)
138 2wfh_A SLIT homolog 2 protein 97.3 0.00012 4.1E-09 57.8 3.6 104 106-214 23-137 (193)
139 2o6r_A Variable lymphocyte rec 97.3 0.00013 4.3E-09 56.6 3.6 96 116-214 28-135 (177)
140 1dce_A Protein (RAB geranylger 97.2 4.6E-05 1.6E-09 70.5 -0.0 53 117-171 442-496 (567)
141 3sb4_A Hypothetical leucine ri 97.1 0.00049 1.7E-08 58.9 5.6 90 182-281 226-325 (329)
142 1dce_A Protein (RAB geranylger 97.1 0.00013 4.4E-09 67.5 1.9 96 89-193 441-544 (567)
143 1w8a_A SLIT protein; signaling 97.1 0.00026 8.9E-09 55.7 3.4 98 90-193 30-137 (192)
144 1io0_A Tropomodulin; LRR prote 97.1 3.9E-05 1.3E-09 60.3 -1.4 37 135-171 64-103 (185)
145 1io0_A Tropomodulin; LRR prote 97.1 0.00014 4.7E-09 57.1 1.4 94 77-172 22-134 (185)
146 2o6r_A Variable lymphocyte rec 97.1 0.00037 1.3E-08 53.9 3.6 99 89-193 28-135 (177)
147 3sb4_A Hypothetical leucine ri 96.9 0.0023 7.9E-08 54.6 7.6 70 202-281 225-301 (329)
148 4b8c_D Glucose-repressible alc 96.8 0.00014 4.6E-09 69.4 -0.8 102 109-214 217-327 (727)
149 1ds9_A Outer arm dynein; leuci 96.8 0.00056 1.9E-08 54.0 2.9 97 88-193 47-151 (198)
150 4fdw_A Leucine rich hypothetic 96.8 0.0022 7.5E-08 56.6 6.8 93 114-214 178-282 (401)
151 3g39_A Variable lymphocyte rec 96.7 0.0011 3.7E-08 51.1 3.9 56 116-172 30-89 (170)
152 2r9u_A Variable lymphocyte rec 96.6 0.0015 5.2E-08 50.4 4.1 55 116-171 33-91 (174)
153 4b8c_D Glucose-repressible alc 96.5 0.00038 1.3E-08 66.3 -0.1 98 89-193 224-327 (727)
154 2r9u_A Variable lymphocyte rec 96.0 0.0037 1.2E-07 48.3 3.1 79 89-172 33-116 (174)
155 3g39_A Variable lymphocyte rec 95.9 0.0056 1.9E-07 47.0 3.4 79 89-172 30-113 (170)
156 2ifg_A High affinity nerve gro 95.7 0.0053 1.8E-07 52.6 3.0 86 105-193 21-114 (347)
157 3rw6_A Nuclear RNA export fact 95.5 0.0062 2.1E-07 50.5 2.5 79 89-169 170-259 (267)
158 4fdw_A Leucine rich hypothetic 94.7 0.017 5.9E-07 50.8 3.3 109 113-230 154-280 (401)
159 1pgv_A TMD-1, tropomodulin TMD 92.6 0.04 1.4E-06 43.4 1.6 116 135-265 40-170 (197)
160 2ifg_A High affinity nerve gro 91.9 0.058 2E-06 46.0 1.9 78 90-172 32-114 (347)
161 3rw6_A Nuclear RNA export fact 91.8 0.043 1.5E-06 45.4 0.9 33 116-148 170-208 (267)
162 1pgv_A TMD-1, tropomodulin TMD 89.9 0.084 2.9E-06 41.5 0.8 96 76-171 26-136 (197)
163 4fs7_A Uncharacterized protein 77.1 3.3 0.00011 35.7 5.4 32 246-280 360-391 (394)
164 4gt6_A Cell surface protein; l 73.6 2.3 7.8E-05 36.7 3.4 17 247-263 373-389 (394)
165 3rfe_A Platelet glycoprotein I 66.1 3.2 0.00011 29.8 2.3 33 116-148 31-67 (130)
166 4gt6_A Cell surface protein; l 57.9 11 0.00039 32.3 4.7 74 113-192 285-367 (394)
167 4fs7_A Uncharacterized protein 56.7 8.3 0.00028 33.1 3.6 128 113-257 250-393 (394)
168 4h09_A Hypothetical leucine ri 46.8 14 0.00049 31.3 3.5 52 114-169 261-318 (379)
169 4h09_A Hypothetical leucine ri 45.4 28 0.00097 29.4 5.2 110 114-230 215-342 (379)
170 2kwv_A RAD30 homolog B, DNA po 29.4 39 0.0013 19.3 2.2 17 6-22 19-35 (48)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.81 E-value=1.2e-20 Score=164.15 Aligned_cols=245 Identities=16% Similarity=0.190 Sum_probs=132.9
Q ss_pred CCCcCCCCCHHHHHHHhcCCChhhHHhhhhcccchhhcccc---cceeeEecccccccccc---ccccccccccc---CC
Q 041569 4 TVDQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQNS---FPILDFDLMNFIVRIEI---KLRIYVCPLDV---EG 74 (285)
Q Consensus 4 ~~d~~~~LP~~il~~I~s~L~~~~~~~~~~vskrWr~lw~~---~~~l~~~~~~~~~~v~~---~~~l~~~~~~~---~~ 74 (285)
+...|+.||+|++.+||+||+.+|+++++.|||+|+.+... ...++++...+.+..-. ...++.+.... ..
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~ 84 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQ 84 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECS
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCCHHHHHhhhhccceEEEcCCccccc
Confidence 44668999999999999999999999999999999998422 11233333221111000 00011110000 00
Q ss_pred ChhHHHHHHHHHHHCCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeee-ecC
Q 041569 75 SSPLFDKWIELATENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEF-PLN 149 (285)
Q Consensus 75 ~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~-~~~ 149 (285)
.... ....+++++++++. +......++..+..+++|++|++++|.+.. ....+++|++|++.++ .++
T Consensus 85 ~~~~------~~~~~~L~~L~L~~--~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~ 156 (336)
T 2ast_B 85 PLAE------HFSPFRVQHMDLSN--SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS 156 (336)
T ss_dssp CCCS------CCCCBCCCEEECTT--CEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCC
T ss_pred cchh------hccCCCCCEEEccC--CCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 0000 00113455555543 221222244445556777777777776543 1224677777777777 566
Q ss_pred hHHHHHHHhCCCccceeeeecCCCcCeEEEc-----cC-CcceEEEeecC-CCc-----eEEEeCCCccEEEEeeCc-Ee
Q 041569 150 DRELHHLISKCPLLEDLSISHCHSLGRIMIS-----SN-KLEHLLISSCY-GLN-----ALDVDAPRLLSFIFDLNP-IP 216 (285)
Q Consensus 150 ~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~-----~~-~L~~L~l~~~~-~~~-----~~~~~~p~L~~l~~~~~~-~~ 216 (285)
+..+..++..||+|++|++++|..++...+. .+ +|++|++.+|. .+. .....+|+|++|++.++. +.
T Consensus 157 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~ 236 (336)
T 2ast_B 157 EFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK 236 (336)
T ss_dssp HHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC
T ss_pred HHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC
Confidence 6666666777777777777777444432111 15 77777777763 121 111246777777777665 21
Q ss_pred ------eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeC
Q 041569 217 ------IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFS 262 (285)
Q Consensus 217 ------~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~ 262 (285)
+...++|+++++.... ....... ..+..+++|+.|+++..
T Consensus 237 ~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~----~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 237 NDCFQEFFQLNYLQHLSLSRCY--DIIPETL----LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGGGGCTTCCEEECTTCT--TCCGGGG----GGGGGCTTCCEEECTTS
T ss_pred HHHHHHHhCCCCCCEeeCCCCC--CCCHHHH----HHHhcCCCCCEEeccCc
Confidence 2233567766665432 1111110 23456778888777644
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=5.7e-19 Score=164.70 Aligned_cols=143 Identities=20% Similarity=0.239 Sum_probs=73.7
Q ss_pred CCCcCCCCCHHHHHHHhcCCC-hhhHHhhhhcccchhhccc-ccceeeEeccccccc---ccccccccccccc-------
Q 041569 4 TVDQISDLPPSIIHHIMTYLS-AKEVTRTSILSTSWNQFQN-SFPILDFDLMNFIVR---IEIKLRIYVCPLD------- 71 (285)
Q Consensus 4 ~~d~~~~LP~~il~~I~s~L~-~~~~~~~~~vskrWr~lw~-~~~~l~~~~~~~~~~---v~~~~~l~~~~~~------- 71 (285)
+.|+|+.|||||+.+||+||+ .+|+++++.|||||+++.. ....+.+........ +..-..++.....
T Consensus 2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 81 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFAD 81 (594)
T ss_dssp --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGG
T ss_pred cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhh
Confidence 358999999999999999999 9999999999999998711 111223322111100 0000001111100
Q ss_pred ----cCCChhHHHHHHHHHH--HCCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCe-eecC-----CCccccccc
Q 041569 72 ----VEGSSPLFDKWIELAT--ENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGC-KLEL-----PSFTCAHLK 139 (285)
Q Consensus 72 ----~~~~~~~~~~~l~~~~--~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~-----~~~~~~~L~ 139 (285)
.......+..|+.... .+++++++++. +......+......+++|++|+|++| .+.. ....+++|+
T Consensus 82 ~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~--~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~ 159 (594)
T 2p1m_B 82 FNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKR--MVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLK 159 (594)
T ss_dssp GTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEES--CBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCC
T ss_pred cccccccccchhhHHHHHHHHhCCCCCeEEeeC--cEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCC
Confidence 0011133455666543 25788888876 22222222222224788888888888 3332 122567777
Q ss_pred eEEeeeeec
Q 041569 140 KLLLSEFPL 148 (285)
Q Consensus 140 ~L~L~~~~~ 148 (285)
+|+|.++.+
T Consensus 160 ~L~L~~~~i 168 (594)
T 2p1m_B 160 ELDLRESDV 168 (594)
T ss_dssp EEECTTCEE
T ss_pred EEeCcCCcc
Confidence 777776654
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=9.3e-19 Score=163.26 Aligned_cols=169 Identities=14% Similarity=0.158 Sum_probs=90.5
Q ss_pred CCCCcCC----CCCHHHHHHHhcCC-ChhhHHhhhhcccchhhcccccce-eeEecc--ccccccc-cccccccccc---
Q 041569 3 ETVDQIS----DLPPSIIHHIMTYL-SAKEVTRTSILSTSWNQFQNSFPI-LDFDLM--NFIVRIE-IKLRIYVCPL--- 70 (285)
Q Consensus 3 ~~~d~~~----~LP~~il~~I~s~L-~~~~~~~~~~vskrWr~lw~~~~~-l~~~~~--~~~~~v~-~~~~l~~~~~--- 70 (285)
++.|+++ .||||++.+||+|| +.+|+++++.|||||++++..... +.+... .+...+- .-..++.+..
T Consensus 4 ~~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 83 (592)
T 3ogk_B 4 PDIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGK 83 (592)
T ss_dssp --------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECS
T ss_pred hhhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEEecCC
Confidence 4567777 89999999999999 899999999999999988422211 111110 0000000 0000111000
Q ss_pred ------------------------------------ccCCChhHHHHHHHHHHHCCCceEEEEeeeCCCccccCCccccC
Q 041569 71 ------------------------------------DVEGSSPLFDKWIELATENGLEVLDFMVIADENTYYALPQTIFS 114 (285)
Q Consensus 71 ------------------------------------~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~l~~~~~~ 114 (285)
....-....-.++......++++|++..+. ......++.....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~-~~~~~~l~~~~~~ 162 (592)
T 3ogk_B 84 PRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS-GFTTDGLLSIVTH 162 (592)
T ss_dssp CGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE-EEEHHHHHHHHHH
T ss_pred cchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC-CcCHHHHHHHHhh
Confidence 000011112222333222346666665421 0112223333335
Q ss_pred cCCccEEEEcCeeecC--------CCccccccceEEeeeeecC---hHHHHHHHhCCCccceeeeecCC
Q 041569 115 AKLLTSLKLVGCKLEL--------PSFTCAHLKKLLLSEFPLN---DRELHHLISKCPLLEDLSISHCH 172 (285)
Q Consensus 115 ~~~L~~L~L~~~~~~~--------~~~~~~~L~~L~L~~~~~~---~~~l~~l~~~cp~Le~L~l~~c~ 172 (285)
|++|++|+|++|.+.. ....+++|++|++.++.++ ...+..++..||+|++|++.+|.
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 231 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence 6788888888876543 1235778888888777653 57777778888888888888874
No 4
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.15 E-value=1.3e-12 Score=113.14 Aligned_cols=169 Identities=14% Similarity=0.164 Sum_probs=90.0
Q ss_pred HHHHHHCCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC-----CCccccccceEEeeeeecChHHHHHHH
Q 041569 83 IELATENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL-----PSFTCAHLKKLLLSEFPLNDRELHHLI 157 (285)
Q Consensus 83 l~~~~~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-----~~~~~~~L~~L~L~~~~~~~~~l~~l~ 157 (285)
+.....++++.+++... .....+...+.+++|++|++++|.+.. ....+++|++|+|.++.+++..... +
T Consensus 64 ~~~~~~~~l~~L~l~~n----~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l 138 (336)
T 2ast_B 64 TGRLLSQGVIAFRCPRS----FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-L 138 (336)
T ss_dssp HHHHHHTTCSEEECTTC----EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-H
T ss_pred HHhhhhccceEEEcCCc----cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH-H
Confidence 33334456666665431 111222334556777777777776542 2235677777777777666555544 3
Q ss_pred hCCCccceeeeecCCCcCeEEEc-----cCCcceEEEeecCCCce-----EEEeCC-CccEEEEeeCc--Ee-------e
Q 041569 158 SKCPLLEDLSISHCHSLGRIMIS-----SNKLEHLLISSCYGLNA-----LDVDAP-RLLSFIFDLNP--IP-------I 217 (285)
Q Consensus 158 ~~cp~Le~L~l~~c~~~~~~~i~-----~~~L~~L~l~~~~~~~~-----~~~~~p-~L~~l~~~~~~--~~-------~ 217 (285)
..|++|++|++++|..++...+. .++|++|++.+|..+.. .....| +|++|++.++. +. +
T Consensus 139 ~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~ 218 (336)
T 2ast_B 139 AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 218 (336)
T ss_dssp TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH
T ss_pred hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH
Confidence 45777777777777544432111 16777777777732221 112456 77777777662 11 1
Q ss_pred ecCCCcccceecccc-CCCCChhhHHHHHHHhccCCCceEEEEEeCC
Q 041569 218 ISTNALCPWNVTLDC-DSNLDCDWFLSLKEFLGASSQIERLCIDFSS 263 (285)
Q Consensus 218 ~~~~~L~~l~i~~~~-~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~ 263 (285)
...++|++++++... +..... ..+..+++|+.|+++.+.
T Consensus 219 ~~~~~L~~L~l~~~~~l~~~~~-------~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 219 RRCPNLVHLDLSDSVMLKNDCF-------QEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp HHCTTCSEEECTTCTTCCGGGG-------GGGGGCTTCCEEECTTCT
T ss_pred hhCCCCCEEeCCCCCcCCHHHH-------HHHhCCCCCCEeeCCCCC
Confidence 234566666665432 211111 234556777777775553
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.06 E-value=2.9e-10 Score=98.31 Aligned_cols=141 Identities=22% Similarity=0.236 Sum_probs=88.8
Q ss_pred HHHHHHCCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC---CCccccccceEEeeeeecChHHHHHHHhC
Q 041569 83 IELATENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL---PSFTCAHLKKLLLSEFPLNDRELHHLISK 159 (285)
Q Consensus 83 l~~~~~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~ 159 (285)
+..+...+++.+++.. .. ...+|..++.+++|++|+|++|.+.. ....+++|++|+|.++.++ .+-..+..
T Consensus 75 l~~~~~~~l~~L~L~~--n~--l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~ 148 (328)
T 4fcg_A 75 LEDATQPGRVALELRS--VP--LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIAS 148 (328)
T ss_dssp HHHHTSTTCCEEEEES--SC--CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGG
T ss_pred HhcccccceeEEEccC--CC--chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhc
Confidence 3333446888888876 22 23677777888889999998887665 2346888899999888774 22233667
Q ss_pred CCccceeeeecCCCcCeEE-----------Ec-cCCcceEEEeecCCCceEE--E-eCCCccEEEEeeCcEe-----eec
Q 041569 160 CPLLEDLSISHCHSLGRIM-----------IS-SNKLEHLLISSCYGLNALD--V-DAPRLLSFIFDLNPIP-----IIS 219 (285)
Q Consensus 160 cp~Le~L~l~~c~~~~~~~-----------i~-~~~L~~L~l~~~~~~~~~~--~-~~p~L~~l~~~~~~~~-----~~~ 219 (285)
+++|+.|++++|...+.+. +. .++|+.|++.++. +..+. + ..++|++|++.++.+. +..
T Consensus 149 l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~ 227 (328)
T 4fcg_A 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIHH 227 (328)
T ss_dssp CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGG
T ss_pred CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCchhhcc
Confidence 8888888888875443221 11 2677777777774 22222 1 3566777777666522 122
Q ss_pred CCCcccceecc
Q 041569 220 TNALCPWNVTL 230 (285)
Q Consensus 220 ~~~L~~l~i~~ 230 (285)
.++|+.++++.
T Consensus 228 l~~L~~L~Ls~ 238 (328)
T 4fcg_A 228 LPKLEELDLRG 238 (328)
T ss_dssp CTTCCEEECTT
T ss_pred CCCCCEEECcC
Confidence 34555555554
No 6
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.01 E-value=1.5e-10 Score=72.13 Aligned_cols=40 Identities=18% Similarity=0.286 Sum_probs=33.6
Q ss_pred CCCCcCCCCCHHHHHHHhcCCChhhHHhhhhcccchhhcc
Q 041569 3 ETVDQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQ 42 (285)
Q Consensus 3 ~~~d~~~~LP~~il~~I~s~L~~~~~~~~~~vskrWr~lw 42 (285)
...+.++.||+|++.+||+||+.+|+++++.|||+|+.+.
T Consensus 4 ~~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~ 43 (53)
T 1fs1_A 4 FPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA 43 (53)
T ss_dssp -----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred CCCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 3457799999999999999999999999999999999873
No 7
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.88 E-value=1.5e-09 Score=84.70 Aligned_cols=91 Identities=16% Similarity=0.182 Sum_probs=68.3
Q ss_pred ccccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeee-ecChHHHHHHHhC---CCccceeeeecCCCcC
Q 041569 104 TYYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEF-PLNDRELHHLISK---CPLLEDLSISHCHSLG 175 (285)
Q Consensus 104 ~~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~-~~~~~~l~~l~~~---cp~Le~L~l~~c~~~~ 175 (285)
+...+|..-.....|++|++++|.+.. ...+|++|++|+|++| .++|.++..+... |++|++|++++|..++
T Consensus 49 ~~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 49 DYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CGGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ccccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 344566544445689999999998765 2247999999999999 4799999998763 7899999999999887
Q ss_pred eEEEcc----CCcceEEEeecCC
Q 041569 176 RIMISS----NKLEHLLISSCYG 194 (285)
Q Consensus 176 ~~~i~~----~~L~~L~l~~~~~ 194 (285)
+-.+.+ ++|++|++.+|+.
T Consensus 129 D~Gl~~L~~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 129 DKGIIALHHFRNLKYLFLSDLPG 151 (176)
T ss_dssp HHHHHHGGGCTTCCEEEEESCTT
T ss_pred HHHHHHHhcCCCCCEEECCCCCC
Confidence 644432 6666666666653
No 8
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.86 E-value=1.1e-09 Score=98.79 Aligned_cols=168 Identities=16% Similarity=0.151 Sum_probs=103.9
Q ss_pred CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccc
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLE 164 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 164 (285)
++++.|+++. .... ...+..+..+++|++|+|++|.+.. ....+++|++|+|.++.++.-. ...+..+++|+
T Consensus 99 ~~L~~L~Ls~--n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~ 174 (452)
T 3zyi_A 99 HHLEVLQLGR--NSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP-SYAFNRVPSLM 174 (452)
T ss_dssp TTCCEEECCS--SCCC-EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEEC-TTTTTTCTTCC
T ss_pred CCCCEEECCC--CccC-CcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeC-HhHHhcCCccc
Confidence 4567776654 2111 1122344457888888888887655 1235788888888888663211 12245678888
Q ss_pred eeeeecCCCcCeEEEcc----CCcceEEEeecCCCceEE-E-eCCCccEEEEeeCcEe------eecCCCcccceecccc
Q 041569 165 DLSISHCHSLGRIMISS----NKLEHLLISSCYGLNALD-V-DAPRLLSFIFDLNPIP------IISTNALCPWNVTLDC 232 (285)
Q Consensus 165 ~L~l~~c~~~~~~~i~~----~~L~~L~l~~~~~~~~~~-~-~~p~L~~l~~~~~~~~------~~~~~~L~~l~i~~~~ 232 (285)
.|++++|..++.+.... ++|+.|+++++. +..+. + ..++|+.|+++++.+. +...++|+.+++....
T Consensus 175 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 253 (452)
T 3zyi_A 175 RLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253 (452)
T ss_dssp EEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC
T ss_pred EEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc
Confidence 88888877666554321 678888888875 22222 2 4578888888877632 2234577777776655
Q ss_pred CCCCChhhHHHHHHHhccCCCceEEEEEeCCCccCC
Q 041569 233 DSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETNS 268 (285)
Q Consensus 233 ~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~ 268 (285)
+..... ..+..+++|+.|+|+.+.+...+
T Consensus 254 l~~~~~-------~~~~~l~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 254 VSLIER-------NAFDGLASLVELNLAHNNLSSLP 282 (452)
T ss_dssp CCEECT-------TTTTTCTTCCEEECCSSCCSCCC
T ss_pred CceECH-------HHhcCCCCCCEEECCCCcCCccC
Confidence 444333 33566788888888877776543
No 9
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.85 E-value=1.1e-09 Score=98.49 Aligned_cols=166 Identities=14% Similarity=0.164 Sum_probs=99.3
Q ss_pred CCCceEEEEeeeCCCccccCC-ccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569 89 NGLEVLDFMVIADENTYYALP-QTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLL 163 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 163 (285)
++++.|+++. .. ...++ ..+..+++|++|+|++|.+.. ....+++|++|+|.++.++.-. ...+..+++|
T Consensus 88 ~~L~~L~Ls~--n~--i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L 162 (440)
T 3zyj_A 88 RHLEILQLSR--NH--IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP-SYAFNRIPSL 162 (440)
T ss_dssp SSCCEEECCS--SC--CCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEEC-TTTTTTCTTC
T ss_pred CCCCEEECCC--Cc--CCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccC-HHHhhhCccc
Confidence 4566666654 21 11222 334457888888888887655 1245788888888887663211 1124567888
Q ss_pred ceeeeecCCCcCeEEEcc----CCcceEEEeecCCCceEE-E-eCCCccEEEEeeCcEee------ecCCCcccceeccc
Q 041569 164 EDLSISHCHSLGRIMISS----NKLEHLLISSCYGLNALD-V-DAPRLLSFIFDLNPIPI------ISTNALCPWNVTLD 231 (285)
Q Consensus 164 e~L~l~~c~~~~~~~i~~----~~L~~L~l~~~~~~~~~~-~-~~p~L~~l~~~~~~~~~------~~~~~L~~l~i~~~ 231 (285)
+.|++++|..++.+.... ++|+.|++.++. +..+. + ..++|++|+++++.+.. ...++|+.+++...
T Consensus 163 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp CEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CEeCCCCCCCcceeCcchhhcccccCeecCCCCc-CccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC
Confidence 888888876665543321 678888888774 33222 2 45678888887776321 22346677776654
Q ss_pred cCCCCChhhHHHHHHHhccCCCceEEEEEeCCCccC
Q 041569 232 CDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETN 267 (285)
Q Consensus 232 ~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~ 267 (285)
.+..... ..+..+++|+.|+|+.+.+...
T Consensus 242 ~l~~~~~-------~~~~~l~~L~~L~L~~N~l~~~ 270 (440)
T 3zyj_A 242 QIQVIER-------NAFDNLQSLVEINLAHNNLTLL 270 (440)
T ss_dssp CCCEECT-------TSSTTCTTCCEEECTTSCCCCC
T ss_pred ceeEECh-------hhhcCCCCCCEEECCCCCCCcc
Confidence 4443332 2345677777777777666653
No 10
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.83 E-value=2e-09 Score=93.37 Aligned_cols=76 Identities=17% Similarity=0.171 Sum_probs=39.2
Q ss_pred CCcceEEEeecCCCceEE-E-eCCCccEEEEeeCcEe----eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCce
Q 041569 182 NKLEHLLISSCYGLNALD-V-DAPRLLSFIFDLNPIP----IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIE 255 (285)
Q Consensus 182 ~~L~~L~l~~~~~~~~~~-~-~~p~L~~l~~~~~~~~----~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~ 255 (285)
++|++|++.+|. +..+. + ..++|+.+.+.++.+. +...++|++++++...+...+. +..+++|+
T Consensus 177 ~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~---------~~~l~~L~ 246 (347)
T 4fmz_A 177 TDLYSLSLNYNQ-IEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP---------LANLSQLT 246 (347)
T ss_dssp TTCSEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG---------GTTCTTCC
T ss_pred CCCCEEEccCCc-ccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc---------hhcCCCCC
Confidence 455555555553 11111 1 3455555555554421 2233466666665544333221 56678888
Q ss_pred EEEEEeCCCccC
Q 041569 256 RLCIDFSSVETN 267 (285)
Q Consensus 256 ~L~L~~~~~~~~ 267 (285)
.|+++.+.....
T Consensus 247 ~L~l~~n~l~~~ 258 (347)
T 4fmz_A 247 WLEIGTNQISDI 258 (347)
T ss_dssp EEECCSSCCCCC
T ss_pred EEECCCCccCCC
Confidence 888877766554
No 11
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.83 E-value=3e-09 Score=91.09 Aligned_cols=140 Identities=18% Similarity=0.200 Sum_probs=69.4
Q ss_pred ccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEE-Ecc-CCcceE
Q 041569 112 IFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIM-ISS-NKLEHL 187 (285)
Q Consensus 112 ~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~-i~~-~~L~~L 187 (285)
+..+++|+.|++++|.+.. ....+++|++|+++++.+++-. . +..+++|++|++++|. ++.+. +.. ++|+.|
T Consensus 81 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L 156 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT--P-LAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYL 156 (308)
T ss_dssp GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCG--G-GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEE
T ss_pred HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCch--h-hcCCCCCCEEECCCCc-cCcCccccCCCCccEE
Confidence 3445566666666655443 2234556666666666553211 1 4456666666666553 11111 222 566666
Q ss_pred EEeecCCCceEE-E-eCCCccEEEEeeCcEe----eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEe
Q 041569 188 LISSCYGLNALD-V-DAPRLLSFIFDLNPIP----IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDF 261 (285)
Q Consensus 188 ~l~~~~~~~~~~-~-~~p~L~~l~~~~~~~~----~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~ 261 (285)
++.+|. +..+. + ..++|+.|+++++.+. +...++|++++++...+..... +..+++|+.|+++.
T Consensus 157 ~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~---------l~~l~~L~~L~l~~ 226 (308)
T 1h6u_A 157 SIGNAQ-VSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP---------LANTSNLFIVTLTN 226 (308)
T ss_dssp ECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGG---------GTTCTTCCEEEEEE
T ss_pred EccCCc-CCCChhhcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCcccc---------ccCCCCCCEEEccC
Confidence 666663 21111 2 3466666666665521 2233456666665544332221 35566666666665
Q ss_pred CCCc
Q 041569 262 SSVE 265 (285)
Q Consensus 262 ~~~~ 265 (285)
+...
T Consensus 227 N~i~ 230 (308)
T 1h6u_A 227 QTIT 230 (308)
T ss_dssp EEEE
T ss_pred Ceee
Confidence 5543
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.82 E-value=2.6e-09 Score=92.70 Aligned_cols=142 Identities=18% Similarity=0.165 Sum_probs=72.8
Q ss_pred cCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEcc-CCcceEEEee
Q 041569 115 AKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISS-NKLEHLLISS 191 (285)
Q Consensus 115 ~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~-~~L~~L~l~~ 191 (285)
+++|+.|++++|.+.. ....+++|+.|.+.++.+++..- +..+++|++|++++|.-.....+.. ++|+.|++.+
T Consensus 176 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~ 252 (347)
T 4fmz_A 176 LTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGT 252 (347)
T ss_dssp CTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred CCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch---hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCC
Confidence 3444444444443332 12234445555555444422111 4456666666666653111111222 6677777766
Q ss_pred cCCCceEE-E-eCCCccEEEEeeCcEe----eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCc
Q 041569 192 CYGLNALD-V-DAPRLLSFIFDLNPIP----IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVE 265 (285)
Q Consensus 192 ~~~~~~~~-~-~~p~L~~l~~~~~~~~----~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~ 265 (285)
|. +..+. + ..|+|++|+++++.+. +...++|+.++++...+..... ..+..+++|+.|+++.+...
T Consensus 253 n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-------~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 253 NQ-ISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDM-------EVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp SC-CCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGH-------HHHHTCTTCSEEECCSSSCC
T ss_pred Cc-cCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcCh-------hHhhccccCCEEEccCCccc
Confidence 64 22222 1 3567777777776532 2233567777766544432222 45667888998888887776
Q ss_pred cC
Q 041569 266 TN 267 (285)
Q Consensus 266 ~~ 267 (285)
..
T Consensus 325 ~~ 326 (347)
T 4fmz_A 325 DI 326 (347)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 13
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.82 E-value=3.8e-09 Score=91.26 Aligned_cols=177 Identities=16% Similarity=0.082 Sum_probs=104.4
Q ss_pred CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC---CCccccccceEEeeeeecChHH---H-----HHHH
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL---PSFTCAHLKKLLLSEFPLNDRE---L-----HHLI 157 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~---l-----~~l~ 157 (285)
++++.++++. .... .+|..+..+++|++|+|++|.+.. ....+++|++|++.++.+.... + ...+
T Consensus 104 ~~L~~L~L~~--n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~ 179 (328)
T 4fcg_A 104 SHLQHMTIDA--AGLM--ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179 (328)
T ss_dssp TTCSEEEEES--SCCC--CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred CCCCEEECCC--CCcc--chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence 5688888776 3222 667777778888888888887655 2235788888888887442110 0 0012
Q ss_pred hCCCccceeeeecCCCcCeEE--Ecc-CCcceEEEeecCCCceEE--E-eCCCccEEEEeeCcE------eeecCCCccc
Q 041569 158 SKCPLLEDLSISHCHSLGRIM--ISS-NKLEHLLISSCYGLNALD--V-DAPRLLSFIFDLNPI------PIISTNALCP 225 (285)
Q Consensus 158 ~~cp~Le~L~l~~c~~~~~~~--i~~-~~L~~L~l~~~~~~~~~~--~-~~p~L~~l~~~~~~~------~~~~~~~L~~ 225 (285)
..+++|++|++++|. ++.+. +.. ++|+.|++.+|. +..+. + ..|+|++|+++++.. .+...++|+.
T Consensus 180 ~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257 (328)
T ss_dssp EESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred ccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence 347888888888774 33221 111 678888888875 22221 2 467888888887551 1223457777
Q ss_pred ceecccc-CCCCChhhHHHHHHHhccCCCceEEEEEeCCCcc-CCCchhhhhhhheee
Q 041569 226 WNVTLDC-DSNLDCDWFLSLKEFLGASSQIERLCIDFSSVET-NSEDATLHFLYKLRL 281 (285)
Q Consensus 226 l~i~~~~-~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~-~~~~~~f~~L~~L~l 281 (285)
+++.... .+..+. .+..+++|+.|+|+.+.... .+. .+.+|++|+.
T Consensus 258 L~L~~n~~~~~~p~--------~~~~l~~L~~L~L~~n~~~~~iP~--~l~~L~~L~~ 305 (328)
T 4fcg_A 258 LILKDCSNLLTLPL--------DIHRLTQLEKLDLRGCVNLSRLPS--LIAQLPANCI 305 (328)
T ss_dssp EECTTCTTCCBCCT--------TGGGCTTCCEEECTTCTTCCCCCG--GGGGSCTTCE
T ss_pred EECCCCCchhhcch--------hhhcCCCCCEEeCCCCCchhhccH--HHhhccCceE
Confidence 7776532 222222 24667888888887655433 222 2445555543
No 14
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.79 E-value=6e-09 Score=94.16 Aligned_cols=140 Identities=17% Similarity=0.131 Sum_probs=82.4
Q ss_pred ccCcCCccEEEEcCeeecC-CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEcc-CCcceEEE
Q 041569 112 IFSAKLLTSLKLVGCKLEL-PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISS-NKLEHLLI 189 (285)
Q Consensus 112 ~~~~~~L~~L~L~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~-~~L~~L~l 189 (285)
+..+++|+.|++++|.+.. ....+++|++|++.++.++.-. +..+++|++|++++|..++.+.+.. ++|+.|++
T Consensus 102 ~~~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l 177 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDC 177 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEEC
T ss_pred cCCCCcCCEEECCCCcCCeecCCCCCcCCEEECCCCccceec----cccCCcCCEEECCCCCcccccccccCCcCCEEEC
Confidence 3456677777777766554 3345677777777777664321 4566777777777765454443333 67777777
Q ss_pred eecCCCceEEE-eCCCccEEEEeeCcE---eeecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCc
Q 041569 190 SSCYGLNALDV-DAPRLLSFIFDLNPI---PIISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVE 265 (285)
Q Consensus 190 ~~~~~~~~~~~-~~p~L~~l~~~~~~~---~~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~ 265 (285)
.++. +..+.+ ..++|+.|.+.++.+ ++...++|+.++++...+...+ +..+++|+.|+++.+...
T Consensus 178 s~n~-l~~l~l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip----------~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 178 SFNK-ITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID----------VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp CSSC-CCCCCCTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC----------CTTCTTCSEEECCSSCCS
T ss_pred CCCc-cceeccccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC----------ccccCCCCEEEeeCCcCC
Confidence 7763 333334 456677777766652 2334456666666654443322 345667777777666555
Q ss_pred c
Q 041569 266 T 266 (285)
Q Consensus 266 ~ 266 (285)
.
T Consensus 247 ~ 247 (457)
T 3bz5_A 247 E 247 (457)
T ss_dssp C
T ss_pred C
Confidence 4
No 15
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.78 E-value=4e-09 Score=95.07 Aligned_cols=167 Identities=14% Similarity=0.037 Sum_probs=116.1
Q ss_pred CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccc
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLE 164 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 164 (285)
++++.|++.. .... ...+..+..+++|+.|+|++|.+.. ....+++|++|+|.++.++.-. ...+..+++|+
T Consensus 75 ~~l~~L~L~~--n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~ 150 (452)
T 3zyi_A 75 SNTRYLNLME--NNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP-SGAFEYLSKLR 150 (452)
T ss_dssp TTCSEEECCS--SCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC-TTTSSSCTTCC
T ss_pred CCccEEECcC--CcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC-hhhhcccCCCC
Confidence 4678887765 2211 1223445568999999999997755 2346899999999999774211 12245789999
Q ss_pred eeeeecCCCcCeEEEc---c-CCcceEEEeecCCCceEEE----eCCCccEEEEeeCcEe----eecCCCcccceecccc
Q 041569 165 DLSISHCHSLGRIMIS---S-NKLEHLLISSCYGLNALDV----DAPRLLSFIFDLNPIP----IISTNALCPWNVTLDC 232 (285)
Q Consensus 165 ~L~l~~c~~~~~~~i~---~-~~L~~L~l~~~~~~~~~~~----~~p~L~~l~~~~~~~~----~~~~~~L~~l~i~~~~ 232 (285)
+|+++++. ++.+... . ++|+.|++.+|..+..+.. ..++|++|+++++.+. +...++|+.++++.+.
T Consensus 151 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 151 ELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNH 229 (452)
T ss_dssp EEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSC
T ss_pred EEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCc
Confidence 99999885 4433221 1 8999999999876666542 4689999999988732 2334578888888766
Q ss_pred CCCCChhhHHHHHHHhccCCCceEEEEEeCCCccC
Q 041569 233 DSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETN 267 (285)
Q Consensus 233 ~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~ 267 (285)
+..... ..+..+++|+.|+|+.+.....
T Consensus 230 l~~~~~-------~~~~~l~~L~~L~L~~n~l~~~ 257 (452)
T 3zyi_A 230 FPEIRP-------GSFHGLSSLKKLWVMNSQVSLI 257 (452)
T ss_dssp CSEECG-------GGGTTCTTCCEEECTTSCCCEE
T ss_pred CcccCc-------ccccCccCCCEEEeCCCcCceE
Confidence 554433 3467789999999988877653
No 16
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.78 E-value=2.8e-09 Score=99.01 Aligned_cols=83 Identities=19% Similarity=0.232 Sum_probs=62.3
Q ss_pred HCCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC--------CCccccccceEEeeeee--cChHHHHHHH
Q 041569 88 ENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL--------PSFTCAHLKKLLLSEFP--LNDRELHHLI 157 (285)
Q Consensus 88 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--------~~~~~~~L~~L~L~~~~--~~~~~l~~l~ 157 (285)
.+++++|++..+. ......++.....|++|++|++++|.+.. ....+++|++|++.++. +++..+..+.
T Consensus 129 ~~~L~~L~L~~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~ 207 (594)
T 2p1m_B 129 FKNFKVLVLSSCE-GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV 207 (594)
T ss_dssp CTTCCEEEEESCE-EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred CCCCcEEeCCCcC-CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence 4789999998631 22223344444568999999999998653 22367899999999885 6788888888
Q ss_pred hCCCccceeeeecC
Q 041569 158 SKCPLLEDLSISHC 171 (285)
Q Consensus 158 ~~cp~Le~L~l~~c 171 (285)
..||+|+.|++.+|
T Consensus 208 ~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 208 TRCPNLKSLKLNRA 221 (594)
T ss_dssp HHCTTCCEEECCTT
T ss_pred HhCCCCcEEecCCC
Confidence 88999999999887
No 17
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.78 E-value=7.2e-09 Score=93.66 Aligned_cols=159 Identities=23% Similarity=0.179 Sum_probs=99.2
Q ss_pred CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC-CCccccccceEEeeeeecChHHHHHHHhCCCccceee
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL-PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLS 167 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 167 (285)
++++.++++. ..... ++ +..+++|+.|++++|.+.. ....+++|++|++.++.++.-. +..+++|++|+
T Consensus 64 ~~L~~L~Ls~--n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l~----~~~l~~L~~L~ 133 (457)
T 3bz5_A 64 TGLTKLICTS--NNITT--LD--LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLD----VSQNPLLTYLN 133 (457)
T ss_dssp TTCSEEECCS--SCCSC--CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSCCC----CTTCTTCCEEE
T ss_pred CCCCEEEccC--CcCCe--Ec--cccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCeec----CCCCCcCCEEE
Confidence 4566666655 22211 22 4456777777777776655 3345677777777777664321 45677777777
Q ss_pred eecCCCcCeEEEcc-CCcceEEEeecCCCceEEE-eCCCccEEEEeeCcE---eeecCCCcccceeccccCCCCChhhHH
Q 041569 168 ISHCHSLGRIMISS-NKLEHLLISSCYGLNALDV-DAPRLLSFIFDLNPI---PIISTNALCPWNVTLDCDSNLDCDWFL 242 (285)
Q Consensus 168 l~~c~~~~~~~i~~-~~L~~L~l~~~~~~~~~~~-~~p~L~~l~~~~~~~---~~~~~~~L~~l~i~~~~~~~~~~~~~~ 242 (285)
++++. ++.+.+.. ++|+.|++.+|.....+.+ ..++|++|+++++.+ ++...++|+.+++....+...+
T Consensus 134 l~~N~-l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~~----- 207 (457)
T 3bz5_A 134 CARNT-LTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLD----- 207 (457)
T ss_dssp CTTSC-CSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCCC-----
T ss_pred CCCCc-cceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCeec-----
Confidence 77764 33333333 6777887777754444444 567788888877763 3334456777777665444331
Q ss_pred HHHHHhccCCCceEEEEEeCCCccCC
Q 041569 243 SLKEFLGASSQIERLCIDFSSVETNS 268 (285)
Q Consensus 243 ~l~~~l~~~~~L~~L~L~~~~~~~~~ 268 (285)
++.+++|+.|+++.+.....+
T Consensus 208 -----l~~l~~L~~L~Ls~N~l~~ip 228 (457)
T 3bz5_A 208 -----LNQNIQLTFLDCSSNKLTEID 228 (457)
T ss_dssp -----CTTCTTCSEEECCSSCCSCCC
T ss_pred -----cccCCCCCEEECcCCcccccC
Confidence 456789999999887776644
No 18
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.77 E-value=1.3e-08 Score=94.59 Aligned_cols=62 Identities=27% Similarity=0.317 Sum_probs=40.0
Q ss_pred CCccccCcCCccEEEEcCeeecC-----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeec
Q 041569 108 LPQTIFSAKLLTSLKLVGCKLEL-----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISH 170 (285)
Q Consensus 108 l~~~~~~~~~L~~L~L~~~~~~~-----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~ 170 (285)
+|..+..+++|++|+|++|.+.. ....+++|++|++. ..+++..+..+...|++|++|++.+
T Consensus 285 l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIER 351 (592)
T ss_dssp GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeec
Confidence 34444457788888888877543 12456777777776 4455666666666677777777773
No 19
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.75 E-value=4.4e-09 Score=91.64 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=23.5
Q ss_pred HHHHHhccCCCceEEEEEeCCCccCCCchhhhhhhhee
Q 041569 243 SLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKLR 280 (285)
Q Consensus 243 ~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~f~~L~~L~ 280 (285)
.+...+..+++|+.|+++.+.....+.. +|.++++|+
T Consensus 268 ~l~~~l~~l~~L~~L~Ls~N~l~~i~~~-~~~~l~~L~ 304 (353)
T 2z80_A 268 QVMKLLNQISGLLELEFSRNQLKSVPDG-IFDRLTSLQ 304 (353)
T ss_dssp HHHHHHHTCTTCCEEECCSSCCCCCCTT-TTTTCTTCC
T ss_pred hhHHHHhcccCCCEEECCCCCCCccCHH-HHhcCCCCC
Confidence 3445677888999999988877754432 244444443
No 20
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.73 E-value=8.9e-09 Score=93.31 Aligned_cols=168 Identities=18% Similarity=0.081 Sum_probs=85.9
Q ss_pred CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccc
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLE 164 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 164 (285)
++++.|+++.. .. ....+..+..+++|+.|+++++.+.. ....+++|++|+|.++.++.-. ...+..+++|+
T Consensus 104 ~~L~~L~Ls~n--~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~ 179 (477)
T 2id5_A 104 SNLTKLDISEN--KI-VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLI 179 (477)
T ss_dssp TTCCEEECTTS--CC-CEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTCC
T ss_pred CCCCEEECCCC--cc-ccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC-hhHhcccCCCc
Confidence 45666666541 11 11223344456777888877775543 2235677777777777663321 12245667777
Q ss_pred eeeeecCCCcCeEE---Ecc-CCcceEEEeecCC-----------------------CceEE---E-eCCCccEEEEeeC
Q 041569 165 DLSISHCHSLGRIM---ISS-NKLEHLLISSCYG-----------------------LNALD---V-DAPRLLSFIFDLN 213 (285)
Q Consensus 165 ~L~l~~c~~~~~~~---i~~-~~L~~L~l~~~~~-----------------------~~~~~---~-~~p~L~~l~~~~~ 213 (285)
.|++.++. +..+. +.. ++|+.|++.+|.. +..+. + ..++|+.|+++++
T Consensus 180 ~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 180 VLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp EEEEESCC-CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS
T ss_pred EEeCCCCc-CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC
Confidence 77776653 11111 111 3444444444432 22221 1 3456666666655
Q ss_pred cEe------eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCccCC
Q 041569 214 PIP------IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETNS 268 (285)
Q Consensus 214 ~~~------~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~ 268 (285)
.+. +...++|+.++++...+..... ..+..+++|+.|+|+.+.+...+
T Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------~~~~~l~~L~~L~L~~N~l~~~~ 312 (477)
T 2id5_A 259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEP-------YAFRGLNYLRVLNVSGNQLTTLE 312 (477)
T ss_dssp CCCEECTTSCTTCTTCCEEECCSSCCSEECT-------TTBTTCTTCCEEECCSSCCSCCC
T ss_pred cCCccChhhccccccCCEEECCCCccceECH-------HHhcCcccCCEEECCCCcCceeC
Confidence 422 1122455556555443333222 23456778888888777666543
No 21
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.72 E-value=5.7e-09 Score=93.76 Aligned_cols=166 Identities=12% Similarity=0.071 Sum_probs=114.4
Q ss_pred CCCceEEEEeeeCCCccccC-CccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569 89 NGLEVLDFMVIADENTYYAL-PQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLL 163 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 163 (285)
.+++.+++... . ...+ +..+..+++|+.|+|++|.+.. ....+++|++|+|.++.++.-. ...+..+++|
T Consensus 64 ~~l~~L~L~~n--~--i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L 138 (440)
T 3zyj_A 64 TNTRLLNLHEN--Q--IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP-NGAFVYLSKL 138 (440)
T ss_dssp TTCSEEECCSC--C--CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC-TTTSCSCSSC
T ss_pred CCCcEEEccCC--c--CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC-HhHhhccccC
Confidence 46777777652 2 1222 2345568999999999997765 2346899999999999774211 1225678999
Q ss_pred ceeeeecCCCcCeEEE---cc-CCcceEEEeecCCCceEEE----eCCCccEEEEeeCcEe----eecCCCcccceeccc
Q 041569 164 EDLSISHCHSLGRIMI---SS-NKLEHLLISSCYGLNALDV----DAPRLLSFIFDLNPIP----IISTNALCPWNVTLD 231 (285)
Q Consensus 164 e~L~l~~c~~~~~~~i---~~-~~L~~L~l~~~~~~~~~~~----~~p~L~~l~~~~~~~~----~~~~~~L~~l~i~~~ 231 (285)
++|+++++. ++.+.- .. ++|+.|++.++..+..+.. ..++|++|+++++.+. +...++|+.++++.+
T Consensus 139 ~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 139 KELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGN 217 (440)
T ss_dssp CEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTS
T ss_pred ceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCC
Confidence 999999875 443322 11 8999999998765555542 4689999999988732 233457888888776
Q ss_pred cCCCCChhhHHHHHHHhccCCCceEEEEEeCCCccC
Q 041569 232 CDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETN 267 (285)
Q Consensus 232 ~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~ 267 (285)
.+..... ..+..+++|+.|+|+.+.+...
T Consensus 218 ~l~~~~~-------~~~~~l~~L~~L~L~~n~l~~~ 246 (440)
T 3zyj_A 218 HLSAIRP-------GSFQGLMHLQKLWMIQSQIQVI 246 (440)
T ss_dssp CCCEECT-------TTTTTCTTCCEEECTTCCCCEE
T ss_pred ccCccCh-------hhhccCccCCEEECCCCceeEE
Confidence 5554433 3456789999999988877653
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.71 E-value=8.1e-09 Score=96.30 Aligned_cols=119 Identities=19% Similarity=0.202 Sum_probs=61.2
Q ss_pred CCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccce
Q 041569 90 GLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLED 165 (285)
Q Consensus 90 ~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 165 (285)
+++.++++. . ....+|..+..+++|++|++++|.+.. ....+++|++|++.++.+....-...+..+++|++
T Consensus 279 ~L~~L~l~~--n--~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 354 (606)
T 3t6q_A 279 GLQELDLTA--T--HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354 (606)
T ss_dssp TCSEEECTT--S--CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred CCCEEeccC--C--ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCE
Confidence 455555443 1 122455555556667777777665543 22346666666666664421111112445667777
Q ss_pred eeeecCCCcCeEE-----Ecc-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCc
Q 041569 166 LSISHCHSLGRIM-----ISS-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNP 214 (285)
Q Consensus 166 L~l~~c~~~~~~~-----i~~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~ 214 (285)
|++++|. ++... +.. ++|+.|++.++. +..+. + ..|+|++|++.++.
T Consensus 355 L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 355 LDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp EECCSSC-CCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCC
T ss_pred EECCCCc-cccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCc
Confidence 7776654 22222 111 667777776663 22221 1 24666666666655
No 23
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.70 E-value=6.2e-09 Score=87.90 Aligned_cols=164 Identities=16% Similarity=0.128 Sum_probs=97.9
Q ss_pred CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCee-ecC----CCccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCK-LEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLL 163 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 163 (285)
++++.+++.. .... ...+..+..+++|++|++++|. +.. ....+++|++|++.++.++... ...+..+++|
T Consensus 56 ~~L~~L~l~~--n~l~-~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L 131 (285)
T 1ozn_A 56 RNLTILWLHS--NVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG-PGLFRGLAAL 131 (285)
T ss_dssp TTCCEEECCS--SCCC-EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTC
T ss_pred CCCCEEECCC--Cccc-eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEEC-HhHhhCCcCC
Confidence 4666666654 2111 1123444556778888888775 443 2235678888888877663211 1224567888
Q ss_pred ceeeeecCCCcCeEE---Ecc-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCcEee------ecCCCcccceec
Q 041569 164 EDLSISHCHSLGRIM---ISS-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNPIPI------ISTNALCPWNVT 229 (285)
Q Consensus 164 e~L~l~~c~~~~~~~---i~~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~~~------~~~~~L~~l~i~ 229 (285)
++|+++++. ++.+. +.. ++|+.|++.++. +..+. + ..++|++|++.++.+.- ...++|+.++++
T Consensus 132 ~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 132 QYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209 (285)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEECCCCc-ccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCC
Confidence 888888764 33222 111 678888888773 44443 1 35778888888776321 233577777777
Q ss_pred cccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCc
Q 041569 230 LDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVE 265 (285)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~ 265 (285)
...+...+. ..+..+++|+.|+++.+...
T Consensus 210 ~n~l~~~~~-------~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 210 ANNLSALPT-------EALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp SSCCSCCCH-------HHHTTCTTCCEEECCSSCEE
T ss_pred CCcCCcCCH-------HHcccCcccCEEeccCCCcc
Confidence 655554433 44567888888888776664
No 24
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.69 E-value=1.5e-08 Score=87.28 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=40.7
Q ss_pred CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC-CCccccccceEEeeeeecChHHHHHHHhCCCccceee
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL-PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLS 167 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 167 (285)
++++.+++.. .... ...|..+..+++|++|+++++.+.. +..-+++|++|++.++.++... ...+..+++|+.|+
T Consensus 76 ~~L~~L~L~~--n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~ 151 (330)
T 1xku_A 76 KNLHTLILIN--NKIS-KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVR-KSVFNGLNQMIVVE 151 (330)
T ss_dssp TTCCEEECCS--SCCC-CBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBC-HHHHTTCTTCCEEE
T ss_pred CCCCEEECCC--CcCC-eeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccC-HhHhcCCccccEEE
Confidence 4566666654 1111 1123444456777777777766544 2223466666666666553221 11234556666666
Q ss_pred eecC
Q 041569 168 ISHC 171 (285)
Q Consensus 168 l~~c 171 (285)
++++
T Consensus 152 l~~n 155 (330)
T 1xku_A 152 LGTN 155 (330)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6555
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.69 E-value=2.7e-08 Score=90.11 Aligned_cols=163 Identities=18% Similarity=0.150 Sum_probs=101.0
Q ss_pred CCCceEEEEeeeCCCccccCCccc-cCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569 89 NGLEVLDFMVIADENTYYALPQTI-FSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLL 163 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 163 (285)
++++.|++.. . ....+|... ..+++|+.|+|++|.+.. ....+++|++|+|.++.++...- ..+..+++|
T Consensus 80 ~~L~~L~L~~--n--~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L 154 (477)
T 2id5_A 80 FNLRTLGLRS--N--RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-RAFSGLNSL 154 (477)
T ss_dssp TTCCEEECCS--S--CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-TSSTTCTTC
T ss_pred ccCCEEECCC--C--cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh-hhccCCCCC
Confidence 4788888765 2 233455543 458999999999997754 33568999999999986633211 125678999
Q ss_pred ceeeeecCCCcCeEE---Ecc-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCcE-e-----eecCCCcccceec
Q 041569 164 EDLSISHCHSLGRIM---ISS-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNPI-P-----IISTNALCPWNVT 229 (285)
Q Consensus 164 e~L~l~~c~~~~~~~---i~~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~-~-----~~~~~~L~~l~i~ 229 (285)
++|++++|. ++.+. +.. ++|+.|++.++. +..+. + ..++|++|++.++.. . .....+|+.++++
T Consensus 155 ~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 232 (477)
T 2id5_A 155 EQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232 (477)
T ss_dssp CEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEE
T ss_pred CEEECCCCc-CcccChhHhcccCCCcEEeCCCCc-CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECc
Confidence 999999985 33322 222 899999999984 33322 1 457788888877541 0 0111256666665
Q ss_pred cccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCc
Q 041569 230 LDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVE 265 (285)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~ 265 (285)
...+...+. ..+..+++|+.|+|+.+...
T Consensus 233 ~n~l~~~~~-------~~~~~l~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 233 HCNLTAVPY-------LAVRHLVYLRFLNLSYNPIS 261 (477)
T ss_dssp SSCCCSCCH-------HHHTTCTTCCEEECCSSCCC
T ss_pred CCcccccCH-------HHhcCccccCeeECCCCcCC
Confidence 544443332 23344555555555544433
No 26
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.69 E-value=1.3e-08 Score=83.56 Aligned_cols=179 Identities=13% Similarity=0.110 Sum_probs=114.9
Q ss_pred CCceEEEEeeeCCCccccCCc-cccCcCCccEEEEcCee-ecC-C---CccccccceEEeee-eecChHHHHHHHhCCCc
Q 041569 90 GLEVLDFMVIADENTYYALPQ-TIFSAKLLTSLKLVGCK-LEL-P---SFTCAHLKKLLLSE-FPLNDRELHHLISKCPL 162 (285)
Q Consensus 90 ~l~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~-~~~-~---~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~ 162 (285)
+++.+++... . ...++. .+..+++|++|+++++. +.. . ...+++|++|++.+ +.++.-. ...+..+++
T Consensus 32 ~l~~L~l~~n--~--l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~ 106 (239)
T 2xwt_C 32 STQTLKLIET--H--LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPL 106 (239)
T ss_dssp TCCEEEEESC--C--CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTT
T ss_pred cccEEEEeCC--c--ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCC
Confidence 6778887762 2 223344 34457899999999885 544 2 24678999999988 5553211 112456899
Q ss_pred cceeeeecCCCcCeEE-Ecc-CCcc---eEEEeecCCCceEEE----eCCCcc-EEEEeeCcEeee-----cCCCcccce
Q 041569 163 LEDLSISHCHSLGRIM-ISS-NKLE---HLLISSCYGLNALDV----DAPRLL-SFIFDLNPIPII-----STNALCPWN 227 (285)
Q Consensus 163 Le~L~l~~c~~~~~~~-i~~-~~L~---~L~l~~~~~~~~~~~----~~p~L~-~l~~~~~~~~~~-----~~~~L~~l~ 227 (285)
|+.|+++++. ++.+. +.. ++|+ .|++.++..+..+.. ..++|+ +|+++++.+... ..++|+.++
T Consensus 107 L~~L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~ 185 (239)
T 2xwt_C 107 LKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVY 185 (239)
T ss_dssp CCEEEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEE
T ss_pred CCEEeCCCCC-CccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEE
Confidence 9999999875 22211 222 5666 888888844444432 367888 898888764321 124677777
Q ss_pred eccc-cCCCCChhhHHHHHHHhccC-CCceEEEEEeCCCccCCCchhhhhhhheeec
Q 041569 228 VTLD-CDSNLDCDWFLSLKEFLGAS-SQIERLCIDFSSVETNSEDATLHFLYKLRLW 282 (285)
Q Consensus 228 i~~~-~~~~~~~~~~~~l~~~l~~~-~~L~~L~L~~~~~~~~~~~~~f~~L~~L~l~ 282 (285)
++.. .+...+. ..+..+ ++|+.|+++.+.....+.. .|.+|++|++.
T Consensus 186 L~~n~~l~~i~~-------~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~ 234 (239)
T 2xwt_C 186 LNKNKYLTVIDK-------DAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIAR 234 (239)
T ss_dssp CTTCTTCCEECT-------TTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEECT
T ss_pred cCCCCCcccCCH-------HHhhccccCCcEEECCCCccccCChh-HhccCceeecc
Confidence 7765 2544433 345667 8999999988888766554 57778887753
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.69 E-value=3.7e-08 Score=86.91 Aligned_cols=17 Identities=24% Similarity=0.261 Sum_probs=8.7
Q ss_pred ccCCCceEEEEEeCCCc
Q 041569 249 GASSQIERLCIDFSSVE 265 (285)
Q Consensus 249 ~~~~~L~~L~L~~~~~~ 265 (285)
..+++|+.|+++.+...
T Consensus 269 ~~l~~L~~L~L~~n~l~ 285 (390)
T 3o6n_A 269 VKMQRLERLYISNNRLV 285 (390)
T ss_dssp TTCSSCCEEECCSSCCC
T ss_pred cccccCCEEECCCCcCc
Confidence 34555555555554443
No 28
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.67 E-value=3e-08 Score=86.29 Aligned_cols=165 Identities=15% Similarity=0.115 Sum_probs=113.1
Q ss_pred CCCceEEEEeeeCCCccccCCc-cccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569 89 NGLEVLDFMVIADENTYYALPQ-TIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLL 163 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 163 (285)
+++++++++. .. ...++. .+..+++|++|++++|.+.. ....+++|++|+|.++.++.-. ...+..+++|
T Consensus 52 ~~L~~L~l~~--n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L 126 (353)
T 2z80_A 52 EAVKSLDLSN--NR--ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS-SSWFKPLSSL 126 (353)
T ss_dssp TTCCEEECTT--SC--CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC-HHHHTTCTTC
T ss_pred ccCcEEECCC--Cc--CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC-HhHhCCCccC
Confidence 4688887765 22 223343 45668999999999997765 2346899999999999875322 2335679999
Q ss_pred ceeeeecCCCcCeEE----Ecc-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCcEee------ecCCCccccee
Q 041569 164 EDLSISHCHSLGRIM----ISS-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNPIPI------ISTNALCPWNV 228 (285)
Q Consensus 164 e~L~l~~c~~~~~~~----i~~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~~~------~~~~~L~~l~i 228 (285)
++|+++++. ++.+. +.. ++|+.|++.++..+..+. + ..++|++|++.++.+.- ...++|+++++
T Consensus 127 ~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 205 (353)
T 2z80_A 127 TFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205 (353)
T ss_dssp SEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred CEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecC
Confidence 999999885 33322 222 899999999985444442 2 46889999999987422 23346778888
Q ss_pred ccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCcc
Q 041569 229 TLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVET 266 (285)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~ 266 (285)
+...+...+ ..+++.+++|+.|+++.+....
T Consensus 206 ~~n~l~~~~-------~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 206 HMKQHILLL-------EIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp ECSCSTTHH-------HHHHHHTTTEEEEEEESCBCTT
T ss_pred CCCccccch-------hhhhhhcccccEEECCCCcccc
Confidence 765543222 2455668999999998877664
No 29
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.67 E-value=8.2e-09 Score=87.64 Aligned_cols=159 Identities=19% Similarity=0.190 Sum_probs=112.1
Q ss_pred CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCcccee
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDL 166 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 166 (285)
++++.+.+.. +. ...++ .+..+++|+.|++++|.+.. ....+++|++|++.++.+++- .. +..+++|+.|
T Consensus 46 ~~L~~L~l~~--~~--i~~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L 117 (291)
T 1h6t_A 46 NSIDQIIANN--SD--IKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL--SS-LKDLKKLKSL 117 (291)
T ss_dssp HTCCEEECTT--SC--CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCG--GG-GTTCTTCCEE
T ss_pred CcccEEEccC--CC--cccCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCC--hh-hccCCCCCEE
Confidence 4678777655 22 22233 35568999999999998876 345689999999999988542 12 6789999999
Q ss_pred eeecCCCcCeEE-Ecc-CCcceEEEeecCCCceEE-E-eCCCccEEEEeeCcEe----eecCCCcccceeccccCCCCCh
Q 041569 167 SISHCHSLGRIM-ISS-NKLEHLLISSCYGLNALD-V-DAPRLLSFIFDLNPIP----IISTNALCPWNVTLDCDSNLDC 238 (285)
Q Consensus 167 ~l~~c~~~~~~~-i~~-~~L~~L~l~~~~~~~~~~-~-~~p~L~~l~~~~~~~~----~~~~~~L~~l~i~~~~~~~~~~ 238 (285)
++++|. ++.+. +.. ++|+.|++++|. +..+. + ..++|+.|+++++.+. +...++|+.++++...+...+
T Consensus 118 ~L~~n~-i~~~~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~- 194 (291)
T 1h6t_A 118 SLEHNG-ISDINGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR- 194 (291)
T ss_dssp ECTTSC-CCCCGGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCG-
T ss_pred ECCCCc-CCCChhhcCCCCCCEEEccCCc-CCcchhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCCh-
Confidence 999985 33321 222 899999999985 33332 2 5689999999988732 334468888888776554432
Q ss_pred hhHHHHHHHhccCCCceEEEEEeCCCcc
Q 041569 239 DWFLSLKEFLGASSQIERLCIDFSSVET 266 (285)
Q Consensus 239 ~~~~~l~~~l~~~~~L~~L~L~~~~~~~ 266 (285)
-+..+++|+.|+++.+....
T Consensus 195 --------~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 195 --------ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp --------GGTTCTTCSEEEEEEEEEEC
T ss_pred --------hhccCCCCCEEECcCCcccC
Confidence 25678999999998776543
No 30
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.66 E-value=1.6e-08 Score=86.57 Aligned_cols=171 Identities=13% Similarity=0.162 Sum_probs=121.4
Q ss_pred HCCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccce
Q 041569 88 ENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLED 165 (285)
Q Consensus 88 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 165 (285)
.++++++.+.. +. ...++ .+..+++|+.|++++|.+.. ....+++|++|++.++.+++-. -+..+++|++
T Consensus 40 l~~L~~L~l~~--~~--i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~ 111 (308)
T 1h6u_A 40 LDGITTLSAFG--TG--VTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS---AIAGLQSIKT 111 (308)
T ss_dssp HHTCCEEECTT--SC--CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG---GGTTCTTCCE
T ss_pred cCCcCEEEeeC--CC--ccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch---hhcCCCCCCE
Confidence 35788888765 22 22344 45668999999999998776 3456899999999999885422 3678999999
Q ss_pred eeeecCCCcCeEE-Ecc-CCcceEEEeecCCCceEE-E-eCCCccEEEEeeCcEe----eecCCCcccceeccccCCCCC
Q 041569 166 LSISHCHSLGRIM-ISS-NKLEHLLISSCYGLNALD-V-DAPRLLSFIFDLNPIP----IISTNALCPWNVTLDCDSNLD 237 (285)
Q Consensus 166 L~l~~c~~~~~~~-i~~-~~L~~L~l~~~~~~~~~~-~-~~p~L~~l~~~~~~~~----~~~~~~L~~l~i~~~~~~~~~ 237 (285)
|++++|. ++.+. +.. ++|++|++.++. +..+. + ..++|+.|++.++.+. +...++|+.++++...+...+
T Consensus 112 L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 112 LDLTSTQ-ITDVTPLAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp EECTTSC-CCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred EECCCCC-CCCchhhcCCCCCCEEECCCCc-cCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcCh
Confidence 9999986 33221 222 899999999986 22222 3 5789999999998742 334468888888876655443
Q ss_pred hhhHHHHHHHhccCCCceEEEEEeCCCccCCCchhhhhhhhee
Q 041569 238 CDWFLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKLR 280 (285)
Q Consensus 238 ~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~f~~L~~L~ 280 (285)
. +..+++|+.|+++.+.....+. +.++++|+
T Consensus 190 ~---------l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~ 220 (308)
T 1h6u_A 190 P---------LASLPNLIEVHLKNNQISDVSP---LANTSNLF 220 (308)
T ss_dssp G---------GGGCTTCCEEECTTSCCCBCGG---GTTCTTCC
T ss_pred h---------hcCCCCCCEEEccCCccCcccc---ccCCCCCC
Confidence 2 5779999999999888876542 44455544
No 31
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.66 E-value=1.6e-08 Score=84.67 Aligned_cols=163 Identities=16% Similarity=0.148 Sum_probs=105.8
Q ss_pred CCCceEEEEeeeCCCccccCCc-cccCcCCccEEEEcCeeecC-C---CccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569 89 NGLEVLDFMVIADENTYYALPQ-TIFSAKLLTSLKLVGCKLEL-P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLL 163 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~-~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 163 (285)
.++++|+++. .. ...++. .+..+++|++|+++++.+.. . ...+++|++|+|.++.++.-. ...+..+++|
T Consensus 37 ~~l~~L~l~~--n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L 111 (270)
T 2o6q_A 37 ADTKKLDLQS--NK--LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP-IGVFDQLVNL 111 (270)
T ss_dssp TTCSEEECCS--SC--CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCC-TTTTTTCSSC
T ss_pred CCCCEEECcC--CC--CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCC-HhHcccccCC
Confidence 4678887765 22 223443 44567899999999887765 1 245889999999988764211 1234668899
Q ss_pred ceeeeecCCCcCeEE---Ecc-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCcEe------eecCCCcccceec
Q 041569 164 EDLSISHCHSLGRIM---ISS-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNPIP------IISTNALCPWNVT 229 (285)
Q Consensus 164 e~L~l~~c~~~~~~~---i~~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~~------~~~~~~L~~l~i~ 229 (285)
++|+++++. ++.+. +.. ++|++|++.++. +..+. + ..++|++|++.++.+. +...++|++++++
T Consensus 112 ~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 112 AELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189 (270)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECC
Confidence 999998874 33222 122 789999998884 33332 1 3588889988887632 1233577888887
Q ss_pred cccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCc
Q 041569 230 LDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVE 265 (285)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~ 265 (285)
...+...+. ..+..+++|+.|+|+-+...
T Consensus 190 ~N~l~~~~~-------~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 190 NNQLKRVPE-------GAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp SSCCSCCCT-------TTTTTCTTCCEEECCSSCBC
T ss_pred CCcCCcCCH-------HHhccccCCCEEEecCCCee
Confidence 655554443 34566788888888777654
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.63 E-value=3.8e-08 Score=89.03 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=26.1
Q ss_pred CcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecC
Q 041569 114 SAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHC 171 (285)
Q Consensus 114 ~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 171 (285)
.+++|+.|++++|.+.. ....+++|++|++.++.+++..- +..+++|+.|++++|
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n 231 (466)
T 1o6v_A 175 NLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGN 231 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSS
T ss_pred cCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCC
Confidence 34555555555555443 12234555555555554422110 333555555555554
No 33
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.62 E-value=1.6e-08 Score=80.66 Aligned_cols=99 Identities=19% Similarity=0.161 Sum_probs=53.3
Q ss_pred CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCcccee
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDL 166 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 166 (285)
++++.+++.. .... .++ .+..+++|++|++++|.+.. ....+++|++|++.++.+++..... +..+++|+.|
T Consensus 44 ~~L~~L~l~~--n~i~--~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L 117 (197)
T 4ezg_A 44 NSLTYITLAN--INVT--DLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLL 117 (197)
T ss_dssp HTCCEEEEES--SCCS--CCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEE
T ss_pred CCccEEeccC--CCcc--ChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEE
Confidence 4566666665 2211 333 34556777777777775443 2234677777777777664433222 4456777777
Q ss_pred eeecCCCcCe-E-EEcc-CCcceEEEeecC
Q 041569 167 SISHCHSLGR-I-MISS-NKLEHLLISSCY 193 (285)
Q Consensus 167 ~l~~c~~~~~-~-~i~~-~~L~~L~l~~~~ 193 (285)
++++|.-... . .+.. ++|+.|++.+|.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 7776642110 1 1111 556666666653
No 34
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.62 E-value=2e-08 Score=84.26 Aligned_cols=163 Identities=14% Similarity=0.108 Sum_probs=111.2
Q ss_pred HCCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccce
Q 041569 88 ENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLED 165 (285)
Q Consensus 88 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 165 (285)
.++++.+.+... . ...+ ..+..+++|+.|++++|.+.. ....+++|++|++.++.++.-. ...+..+++|++
T Consensus 40 l~~L~~L~l~~~--~--i~~~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 113 (272)
T 3rfs_A 40 LNSIDQIIANNS--D--IKSV-QGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLP-NGVFDKLTNLKE 113 (272)
T ss_dssp HTTCCEEECTTS--C--CCCC-TTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCE
T ss_pred ccceeeeeeCCC--C--cccc-cccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccC-hhHhcCCcCCCE
Confidence 457777776552 1 1122 235668999999999998766 2346899999999999774211 122467899999
Q ss_pred eeeecCCCcCeEE---Ecc-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCcEe------eecCCCcccceeccc
Q 041569 166 LSISHCHSLGRIM---ISS-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNPIP------IISTNALCPWNVTLD 231 (285)
Q Consensus 166 L~l~~c~~~~~~~---i~~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~~------~~~~~~L~~l~i~~~ 231 (285)
|++++|. ++.+. +.. ++|+.|++.+|. +..+. + ..++|++|++.++.+. +...++|+.+++...
T Consensus 114 L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 114 LVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp EECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCc-CCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 9999885 33322 222 789999999984 33333 2 4689999999988742 123457888888776
Q ss_pred cCCCCChhhHHHHHHHhccCCCceEEEEEeCCCc
Q 041569 232 CDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVE 265 (285)
Q Consensus 232 ~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~ 265 (285)
.+...+. ..+..+++|+.|+++.+...
T Consensus 192 ~l~~~~~-------~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 192 QLKSVPD-------GVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CCSCCCT-------TTTTTCTTCCEEECCSSCBC
T ss_pred cCCccCH-------HHHhCCcCCCEEEccCCCcc
Confidence 6555443 34567899999999777654
No 35
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.62 E-value=9.5e-09 Score=88.24 Aligned_cols=170 Identities=15% Similarity=0.137 Sum_probs=114.2
Q ss_pred CCCceEEEEeeeCCCccccCC-ccccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccce
Q 041569 89 NGLEVLDFMVIADENTYYALP-QTIFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLED 165 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 165 (285)
+++++++++. .. ...++ ..+..+++|+.|+|++|.+.. ....+++|++|++.++.++. +..+++|++
T Consensus 34 ~~L~~L~L~~--n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~------l~~~~~L~~ 103 (317)
T 3o53_A 34 WNVKELDLSG--NP--LSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIET 103 (317)
T ss_dssp GGCSEEECTT--SC--CCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE------EEECTTCCE
T ss_pred CCCCEEECcC--Cc--cCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc------ccCCCCcCE
Confidence 4688887765 22 22233 345568999999999987754 34568999999999987743 224589999
Q ss_pred eeeecCCCcCeEEEcc-CCcceEEEeecC--CCceEEE-eCCCccEEEEeeCcEee-------ecCCCcccceeccccCC
Q 041569 166 LSISHCHSLGRIMISS-NKLEHLLISSCY--GLNALDV-DAPRLLSFIFDLNPIPI-------ISTNALCPWNVTLDCDS 234 (285)
Q Consensus 166 L~l~~c~~~~~~~i~~-~~L~~L~l~~~~--~~~~~~~-~~p~L~~l~~~~~~~~~-------~~~~~L~~l~i~~~~~~ 234 (285)
|+++++. ++.+.... ++|+.|+++++. .+....+ ..++|++|+++++.+.- ...++|++++++...+.
T Consensus 104 L~l~~n~-l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 104 LHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp EECCSSC-CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred EECCCCc-cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 9999875 55444444 889999999985 2212222 46889999998887321 12368888888776554
Q ss_pred CCChhhHHHHHHHhccCCCceEEEEEeCCCccCCCchhhhhhhhee
Q 041569 235 NLDCDWFLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKLR 280 (285)
Q Consensus 235 ~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~f~~L~~L~ 280 (285)
..+.. ..+++|+.|+++.+.....+.. |..+++|+
T Consensus 183 ~~~~~---------~~l~~L~~L~Ls~N~l~~l~~~--~~~l~~L~ 217 (317)
T 3o53_A 183 DVKGQ---------VVFAKLKTLDLSSNKLAFMGPE--FQSAAGVT 217 (317)
T ss_dssp EEECC---------CCCTTCCEEECCSSCCCEECGG--GGGGTTCS
T ss_pred ccccc---------cccccCCEEECCCCcCCcchhh--hcccCccc
Confidence 44221 2378999999998888764332 44455554
No 36
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.62 E-value=2.5e-08 Score=90.19 Aligned_cols=78 Identities=21% Similarity=0.178 Sum_probs=43.0
Q ss_pred ccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEcc-CCcceEE
Q 041569 112 IFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISS-NKLEHLL 188 (285)
Q Consensus 112 ~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~-~~L~~L~ 188 (285)
+..+++|++|++++|.+.. +...+++|++|++.++.+++- ..+..+++|+.|++++|.-.....+.. ++|+.|+
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 271 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK 271 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc---hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEE
Confidence 4456778888887776654 223467777777777766332 124456667777766664111111111 4555555
Q ss_pred Eeec
Q 041569 189 ISSC 192 (285)
Q Consensus 189 l~~~ 192 (285)
+.+|
T Consensus 272 l~~n 275 (466)
T 1o6v_A 272 LGAN 275 (466)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 5554
No 37
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.62 E-value=5.8e-08 Score=77.36 Aligned_cols=119 Identities=18% Similarity=0.181 Sum_probs=87.2
Q ss_pred CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccc
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLE 164 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 164 (285)
++++.+.+... . ...+..+..+++|++|++++|.+.. ....+++|++|+++++.+++..... +..+++|+
T Consensus 66 ~~L~~L~l~~n--~---~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~-l~~l~~L~ 139 (197)
T 4ezg_A 66 HNIKDLTINNI--H---ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK-INTLPKVN 139 (197)
T ss_dssp TTCSEEEEESC--C---CSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHH-HTTCSSCC
T ss_pred CCCCEEEccCC--C---CCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHH-HhhCCCCC
Confidence 57999999873 2 2233456678999999999998764 3346899999999999997755544 57899999
Q ss_pred eeeeecCCCcCeEE-Ecc-CCcceEEEeecCCCceE-EE-eCCCccEEEEeeCc
Q 041569 165 DLSISHCHSLGRIM-ISS-NKLEHLLISSCYGLNAL-DV-DAPRLLSFIFDLNP 214 (285)
Q Consensus 165 ~L~l~~c~~~~~~~-i~~-~~L~~L~l~~~~~~~~~-~~-~~p~L~~l~~~~~~ 214 (285)
+|++++|..++.+. +.. ++|+.|++.+|. +..+ .+ ..|+|++|++.++.
T Consensus 140 ~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 140 SIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECBC-
T ss_pred EEEccCCCCccccHhhcCCCCCCEEECCCCC-CcChHHhccCCCCCEEEeeCcc
Confidence 99999997555443 222 789999999885 3222 22 56888888887765
No 38
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.60 E-value=1.4e-08 Score=92.55 Aligned_cols=169 Identities=15% Similarity=0.130 Sum_probs=110.1
Q ss_pred CCceEEEEeeeCCCccccCC-ccccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCcccee
Q 041569 90 GLEVLDFMVIADENTYYALP-QTIFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDL 166 (285)
Q Consensus 90 ~l~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 166 (285)
+++.|+++.. . ...++ ..+..+++|+.|+|++|.+.. +...+++|++|+|+++.++. +...|+|+.|
T Consensus 35 ~L~~L~Ls~n--~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L 104 (487)
T 3oja_A 35 NVKELDLSGN--P--LSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETL 104 (487)
T ss_dssp GCCEEECCSS--C--CCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEE
T ss_pred CccEEEeeCC--c--CCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEE
Confidence 6778877662 2 12233 455567899999999887654 44568889999999887743 1234889999
Q ss_pred eeecCCCcCeEEEcc-CCcceEEEeecC--CCceEEE-eCCCccEEEEeeCcEee------e-cCCCcccceeccccCCC
Q 041569 167 SISHCHSLGRIMISS-NKLEHLLISSCY--GLNALDV-DAPRLLSFIFDLNPIPI------I-STNALCPWNVTLDCDSN 235 (285)
Q Consensus 167 ~l~~c~~~~~~~i~~-~~L~~L~l~~~~--~~~~~~~-~~p~L~~l~~~~~~~~~------~-~~~~L~~l~i~~~~~~~ 235 (285)
++++|. ++.+.... ++|+.|++.++. ......+ ..++|++|+++++.+.- . ..++|+.++++...+..
T Consensus 105 ~L~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 105 HAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp ECCSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred ECcCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 998875 44333333 789999998885 1112222 46889999988876321 1 34678888887755544
Q ss_pred CChhhHHHHHHHhccCCCceEEEEEeCCCccCCCchhhhhhhhee
Q 041569 236 LDCDWFLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKLR 280 (285)
Q Consensus 236 ~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~f~~L~~L~ 280 (285)
.+. ...+++|+.|+|+.+.....+.. |..+++|+
T Consensus 184 ~~~---------~~~l~~L~~L~Ls~N~l~~~~~~--~~~l~~L~ 217 (487)
T 3oja_A 184 VKG---------QVVFAKLKTLDLSSNKLAFMGPE--FQSAAGVT 217 (487)
T ss_dssp EEC---------CCCCTTCCEEECCSSCCCEECGG--GGGGTTCS
T ss_pred ccc---------cccCCCCCEEECCCCCCCCCCHh--HcCCCCcc
Confidence 422 12478999999988888764322 44455444
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.59 E-value=1.1e-07 Score=83.92 Aligned_cols=58 Identities=10% Similarity=0.113 Sum_probs=33.4
Q ss_pred CCCccEEEEeeCcEe------eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCccC
Q 041569 202 APRLLSFIFDLNPIP------IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETN 267 (285)
Q Consensus 202 ~p~L~~l~~~~~~~~------~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~ 267 (285)
.|+|++|+++++.+. +...++|+.++++...+...+. ....+++|+.|+|+.+.....
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~l~~L~~L~L~~n~l~~~ 310 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL--------YGQPIPTLKVLDLSHNHLLHV 310 (390)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEEC--------SSSCCTTCCEEECCSSCCCCC
T ss_pred CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCc--------ccCCCCCCCEEECCCCcceec
Confidence 456666666665521 1223466666666544433221 225678999999988877653
No 40
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.59 E-value=8.1e-09 Score=87.16 Aligned_cols=177 Identities=17% Similarity=0.133 Sum_probs=117.5
Q ss_pred CCCceEEEEeeeCCCccccCC-ccccCcCCccEEEEcCeeecC----CCccccccceEEeeeee-cChHHHHHHHhCCCc
Q 041569 89 NGLEVLDFMVIADENTYYALP-QTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFP-LNDRELHHLISKCPL 162 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~ 162 (285)
+++++++++. .. ...++ ..+..+++|+.|+++++.+.. ....+++|++|++.++. ++.-. ...+..+++
T Consensus 32 ~~l~~L~l~~--n~--i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~ 106 (285)
T 1ozn_A 32 AASQRIFLHG--NR--ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGR 106 (285)
T ss_dssp TTCSEEECTT--SC--CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTT
T ss_pred CCceEEEeeC--Cc--CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-HHHhcCCcC
Confidence 5788888765 22 22233 345568999999999987654 23468999999999986 53221 122567899
Q ss_pred cceeeeecCCCcCeEE---Ecc-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCcEe------eecCCCccccee
Q 041569 163 LEDLSISHCHSLGRIM---ISS-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNPIP------IISTNALCPWNV 228 (285)
Q Consensus 163 Le~L~l~~c~~~~~~~---i~~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~~------~~~~~~L~~l~i 228 (285)
|++|++++|. ++.+. +.. ++|++|++.++. +..+. + ..++|++|++.++.+. +...++|+.+++
T Consensus 107 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 184 (285)
T 1ozn_A 107 LHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184 (285)
T ss_dssp CCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEEC
Confidence 9999999885 33221 222 789999999985 33332 2 4689999999998742 223457888888
Q ss_pred ccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCccCCCchhhhhhhhee
Q 041569 229 TLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKLR 280 (285)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~f~~L~~L~ 280 (285)
+...+..... ..+..+++|+.|+++.+.....+. ..|..+++|+
T Consensus 185 ~~n~l~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~ 228 (285)
T 1ozn_A 185 HQNRVAHVHP-------HAFRDLGRLMTLYLFANNLSALPT-EALAPLRALQ 228 (285)
T ss_dssp CSSCCCEECT-------TTTTTCTTCCEEECCSSCCSCCCH-HHHTTCTTCC
T ss_pred CCCcccccCH-------hHccCcccccEeeCCCCcCCcCCH-HHcccCcccC
Confidence 7755544422 345678999999998887776432 2355555554
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.58 E-value=1.2e-07 Score=87.16 Aligned_cols=164 Identities=14% Similarity=0.069 Sum_probs=107.6
Q ss_pred HCCCceEEEEeeeCCCccccCCcccc-CcCCccEEEEcCeeecC-------CCccccccceEEeeeeecChHH-HHHHHh
Q 041569 88 ENGLEVLDFMVIADENTYYALPQTIF-SAKLLTSLKLVGCKLEL-------PSFTCAHLKKLLLSEFPLNDRE-LHHLIS 158 (285)
Q Consensus 88 ~~~l~~L~l~~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~-------~~~~~~~L~~L~L~~~~~~~~~-l~~l~~ 158 (285)
..+++.+++.. .. ...+|..++ .+++|+.|++++|.+.. ....+++|++|+++++.++.-. ....+.
T Consensus 309 ~~~L~~L~l~~--n~--l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 384 (549)
T 2z81_A 309 LEKVKRITVEN--SK--VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384 (549)
T ss_dssp STTCCEEEEES--SC--CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGG
T ss_pred cccceEEEecc--Cc--cccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhh
Confidence 35677777765 22 235676665 58999999999998753 1346899999999999885432 345578
Q ss_pred CCCccceeeeecCCCcCeEE--Ecc-CCcceEEEeecCCCceEEE-eCCCccEEEEeeCcEe--eecCCCcccceecccc
Q 041569 159 KCPLLEDLSISHCHSLGRIM--ISS-NKLEHLLISSCYGLNALDV-DAPRLLSFIFDLNPIP--IISTNALCPWNVTLDC 232 (285)
Q Consensus 159 ~cp~Le~L~l~~c~~~~~~~--i~~-~~L~~L~l~~~~~~~~~~~-~~p~L~~l~~~~~~~~--~~~~~~L~~l~i~~~~ 232 (285)
.+++|++|++++|. ++.+. +.. ++|+.|+++++. +..+.- ..++|++|+++++.+. ....++|+.++++...
T Consensus 385 ~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~ 462 (549)
T 2z81_A 385 TLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNK 462 (549)
T ss_dssp GCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred cCCCCCEEECCCCC-CccCChhhcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCc
Confidence 89999999999984 33221 111 688888888874 333222 1257788887777632 1234577777777655
Q ss_pred CCCCChhhHHHHHHHhccCCCceEEEEEeCCCcc
Q 041569 233 DSNLDCDWFLSLKEFLGASSQIERLCIDFSSVET 266 (285)
Q Consensus 233 ~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~ 266 (285)
+..++.. ..+++|+.|+|+.+....
T Consensus 463 l~~ip~~---------~~l~~L~~L~Ls~N~l~~ 487 (549)
T 2z81_A 463 LKTLPDA---------SLFPVLLVMKISRNQLKS 487 (549)
T ss_dssp CSSCCCG---------GGCTTCCEEECCSSCCCC
T ss_pred cCcCCCc---------ccCccCCEEecCCCccCC
Confidence 5544331 236777777777766654
No 42
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.58 E-value=1.5e-08 Score=85.11 Aligned_cols=134 Identities=20% Similarity=0.167 Sum_probs=73.5
Q ss_pred CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC-C---CccccccceEEeeeeecChHHHHHHHhCCCccc
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL-P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLLE 164 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 164 (285)
++++.++++. .... .+ ..+..+++|++|++++|.+.. . ...+++|++|++.++.++... ...+..+++|+
T Consensus 63 ~~L~~L~l~~--n~l~--~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~ 136 (272)
T 3rfs_A 63 PNVRYLALGG--NKLH--DI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP-DGVFDKLTNLT 136 (272)
T ss_dssp TTCCEEECTT--SCCC--CC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCC
T ss_pred CCCcEEECCC--CCCC--Cc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccC-HHHhccCCCCC
Confidence 4666666654 2111 12 244556777777777776654 1 235677777777777653211 11244567777
Q ss_pred eeeeecCCCcCeEEE---cc-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCcEe------eecCCCcccceecc
Q 041569 165 DLSISHCHSLGRIMI---SS-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNPIP------IISTNALCPWNVTL 230 (285)
Q Consensus 165 ~L~l~~c~~~~~~~i---~~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~~------~~~~~~L~~l~i~~ 230 (285)
.|++++|. ++.+.. .. ++|+.|++.+|. +..+. + ..++|++|++.++.+. +...++|+.+++..
T Consensus 137 ~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 137 YLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred EEECCCCc-cCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccC
Confidence 77777763 332221 11 677777777774 22222 1 3467777777776532 12234566666654
No 43
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.58 E-value=3.3e-08 Score=82.84 Aligned_cols=136 Identities=21% Similarity=0.200 Sum_probs=66.2
Q ss_pred CCCceEEEEeeeCCCccccCCcccc-CcCCccEEEEcCeeecC-C---CccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIF-SAKLLTSLKLVGCKLEL-P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLL 163 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~-~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 163 (285)
++++.|++.. . ....++...+ .+++|++|+++++.+.. + ...+++|++|++.++.++.-. ...+..+++|
T Consensus 61 ~~L~~L~l~~--n--~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L 135 (270)
T 2o6q_A 61 TKLRLLYLND--N--KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLP-PRVFDSLTKL 135 (270)
T ss_dssp TTCCEEECCS--S--CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCC-TTTTTTCTTC
T ss_pred CCCCEEECCC--C--ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeC-HHHhCcCcCC
Confidence 3455555543 1 1123444333 35666666666665544 1 134566666666666552211 1113456666
Q ss_pred ceeeeecCCCcCeEEE---cc-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCcEe------eecCCCcccceec
Q 041569 164 EDLSISHCHSLGRIMI---SS-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNPIP------IISTNALCPWNVT 229 (285)
Q Consensus 164 e~L~l~~c~~~~~~~i---~~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~~------~~~~~~L~~l~i~ 229 (285)
+.|+++++. ++.+.. .. ++|+.|++.++. +..+. + ..++|++|++.++.+. +...++|+.+++.
T Consensus 136 ~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 136 TYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213 (270)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CEEECCCCc-CCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEec
Confidence 666666653 222211 11 566666666663 22222 1 2466666666665422 1122355555555
Q ss_pred cc
Q 041569 230 LD 231 (285)
Q Consensus 230 ~~ 231 (285)
.+
T Consensus 214 ~N 215 (270)
T 2o6q_A 214 EN 215 (270)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 44
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.58 E-value=1.4e-08 Score=94.72 Aligned_cols=160 Identities=19% Similarity=0.198 Sum_probs=113.0
Q ss_pred HCCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccce
Q 041569 88 ENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLED 165 (285)
Q Consensus 88 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 165 (285)
..+++.|.+.. +. ...++ .+..+++|+.|+|++|.+.. ....+++|+.|.|.++.++.-. .+..+++|+.
T Consensus 42 L~~L~~L~l~~--n~--i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~ 113 (605)
T 1m9s_A 42 LNSIDQIIANN--SD--IKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS---SLKDLKKLKS 113 (605)
T ss_dssp HTTCCCCBCTT--CC--CCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT---TSTTCTTCCE
T ss_pred CCCCCEEECcC--CC--CCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh---hhccCCCCCE
Confidence 35677776654 22 22233 46678999999999998776 3457899999999999885421 3678999999
Q ss_pred eeeecCCCcCeEE-Ecc-CCcceEEEeecCCCceEE-E-eCCCccEEEEeeCcE----eeecCCCcccceeccccCCCCC
Q 041569 166 LSISHCHSLGRIM-ISS-NKLEHLLISSCYGLNALD-V-DAPRLLSFIFDLNPI----PIISTNALCPWNVTLDCDSNLD 237 (285)
Q Consensus 166 L~l~~c~~~~~~~-i~~-~~L~~L~l~~~~~~~~~~-~-~~p~L~~l~~~~~~~----~~~~~~~L~~l~i~~~~~~~~~ 237 (285)
|++++|. +..+. +.. ++|+.|++++|. +..+. + .+++|+.|+++++.+ ++...++|+.++++...+...+
T Consensus 114 L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~ 191 (605)
T 1m9s_A 114 LSLEHNG-ISDINGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR 191 (605)
T ss_dssp EECTTSC-CCCCGGGGGCTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCG
T ss_pred EEecCCC-CCCCccccCCCccCEEECCCCc-cCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCCh
Confidence 9999986 33221 222 899999999985 33332 2 578999999998873 2344568888888876554431
Q ss_pred hhhHHHHHHHhccCCCceEEEEEeCCCcc
Q 041569 238 CDWFLSLKEFLGASSQIERLCIDFSSVET 266 (285)
Q Consensus 238 ~~~~~~l~~~l~~~~~L~~L~L~~~~~~~ 266 (285)
-+..+++|+.|+|+.+....
T Consensus 192 ---------~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 192 ---------ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp ---------GGTTCTTCSEEECCSEEEEC
T ss_pred ---------HHccCCCCCEEEccCCcCcC
Confidence 25678999999997765543
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.57 E-value=3.5e-08 Score=84.62 Aligned_cols=57 Identities=9% Similarity=-0.004 Sum_probs=30.5
Q ss_pred CCCccEEEEeeCcEe-----eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCc
Q 041569 202 APRLLSFIFDLNPIP-----IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVE 265 (285)
Q Consensus 202 ~p~L~~l~~~~~~~~-----~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~ 265 (285)
.++|+.|++.++.+. +...++|++++++...+..... ..+..+++|+.|+|+.+...
T Consensus 220 l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-------~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP-------QGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp TSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCC-------GGGGGCTTCCEEECCSSEEE
T ss_pred CCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCC-------hHHhcCcCCCEEECcCCccc
Confidence 456666666665432 1223456666665543321111 23456777777777766665
No 46
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.56 E-value=4.3e-08 Score=83.13 Aligned_cols=149 Identities=21% Similarity=0.206 Sum_probs=100.8
Q ss_pred ccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEE--
Q 041569 106 YALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMI-- 179 (285)
Q Consensus 106 ~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i-- 179 (285)
..+|..+. ++++.|+|+++.+.. ....+++|++|+|.++.++.-.. ...+++|+.|+++++. ++.+.-
T Consensus 23 ~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~-l~~l~~~~ 96 (290)
T 1p9a_G 23 TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQ-LQSLPLLG 96 (290)
T ss_dssp SSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSC-CSSCCCCT
T ss_pred CcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCc-CCcCchhh
Confidence 44554443 688999999887754 23468899999999887743211 1578999999999875 332211
Q ss_pred cc-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCcEee------ecCCCcccceeccccCCCCChhhHHHHHHHh
Q 041569 180 SS-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNPIPI------ISTNALCPWNVTLDCDSNLDCDWFLSLKEFL 248 (285)
Q Consensus 180 ~~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~~~------~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l 248 (285)
.. ++|+.|++.++. +..+. + ..++|++|.++++.+.. ...++|+.++++...+...+. ..+
T Consensus 97 ~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-------~~~ 168 (290)
T 1p9a_G 97 QTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA-------GLL 168 (290)
T ss_dssp TTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT-------TTT
T ss_pred ccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH-------HHh
Confidence 11 789999998884 33332 2 46789999998887431 233578888887766655544 345
Q ss_pred ccCCCceEEEEEeCCCccCC
Q 041569 249 GASSQIERLCIDFSSVETNS 268 (285)
Q Consensus 249 ~~~~~L~~L~L~~~~~~~~~ 268 (285)
..+++|+.|+|+.+.+...+
T Consensus 169 ~~l~~L~~L~L~~N~l~~ip 188 (290)
T 1p9a_G 169 NGLENLDTLLLQENSLYTIP 188 (290)
T ss_dssp TTCTTCCEEECCSSCCCCCC
T ss_pred cCcCCCCEEECCCCcCCccC
Confidence 67889999999888877643
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.56 E-value=1.2e-07 Score=88.53 Aligned_cols=16 Identities=0% Similarity=0.085 Sum_probs=7.2
Q ss_pred ccCCCceEEEEEeCCC
Q 041569 249 GASSQIERLCIDFSSV 264 (285)
Q Consensus 249 ~~~~~L~~L~L~~~~~ 264 (285)
..+++|+.|+|+.+..
T Consensus 251 ~~l~~L~~L~Ls~N~l 266 (597)
T 3oja_B 251 LNYPGLVEVDLSYNEL 266 (597)
T ss_dssp GGCTTCSEEECCSSCC
T ss_pred ccCCCCCEEECCCCcc
Confidence 3444444444444433
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.54 E-value=2.5e-08 Score=86.09 Aligned_cols=80 Identities=11% Similarity=0.060 Sum_probs=43.0
Q ss_pred CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC-CCccccccceEEeeeeecChHHHHHHHhCCCccceee
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL-PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLS 167 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 167 (285)
++++.+++.. .... ...|..+..+++|++|++++|.+.. +..-+++|++|++.++.++.-. ...+..+++|+.|+
T Consensus 78 ~~L~~L~L~~--n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~ 153 (332)
T 2ft3_A 78 QHLYALVLVN--NKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVP-KGVFSGLRNMNCIE 153 (332)
T ss_dssp TTCCEEECCS--SCCC-EECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCC-SGGGSSCSSCCEEE
T ss_pred CCCcEEECCC--CccC-ccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccC-HhHhCCCccCCEEE
Confidence 3566666554 2111 1123344456777777777776554 2223367777777776553211 11245567777777
Q ss_pred eecCC
Q 041569 168 ISHCH 172 (285)
Q Consensus 168 l~~c~ 172 (285)
++++.
T Consensus 154 l~~n~ 158 (332)
T 2ft3_A 154 MGGNP 158 (332)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 77653
No 49
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.54 E-value=1.2e-07 Score=85.10 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=37.6
Q ss_pred CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCcEe------eecCCCcccceeccccCCCCChhhHHHHHHHhccC
Q 041569 182 NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNPIP------IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGAS 251 (285)
Q Consensus 182 ~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~~------~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~ 251 (285)
++|+.|++.++. +..+. + ..++|++|+++++.+. +...++|+.++++...+..... ..+..+
T Consensus 299 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------~~~~~l 370 (455)
T 3v47_A 299 TDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD-------QSFLGL 370 (455)
T ss_dssp TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT-------TTTTTC
T ss_pred CCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh-------hhcccc
Confidence 455666665552 22221 1 3456666666665421 1123455556555543332222 223456
Q ss_pred CCceEEEEEeCCCcc
Q 041569 252 SQIERLCIDFSSVET 266 (285)
Q Consensus 252 ~~L~~L~L~~~~~~~ 266 (285)
++|+.|+|+.+....
T Consensus 371 ~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 371 PNLKELALDTNQLKS 385 (455)
T ss_dssp TTCCEEECCSSCCSC
T ss_pred ccccEEECCCCcccc
Confidence 666666666665554
No 50
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.54 E-value=1e-07 Score=87.64 Aligned_cols=166 Identities=14% Similarity=0.131 Sum_probs=111.3
Q ss_pred CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccc
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLE 164 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 164 (285)
+.++.++++. .... ...|..+..+++|++|++++|.+.. ....+++|++|+|+++.++...- ..+..+++|+
T Consensus 26 ~~L~~L~Ls~--n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~ 101 (549)
T 2z81_A 26 AAMKSLDLSF--NKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS-SWFGPLSSLK 101 (549)
T ss_dssp TTCCEEECCS--SCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH-HHHTTCTTCC
T ss_pred CCccEEECcC--CccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH-HHhccCCCCc
Confidence 4688888776 2211 2234456678999999999997765 23468999999999998754322 2356899999
Q ss_pred eeeeecCCCcCeEE----Ecc-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCcEee------ecCCCcccceec
Q 041569 165 DLSISHCHSLGRIM----ISS-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNPIPI------ISTNALCPWNVT 229 (285)
Q Consensus 165 ~L~l~~c~~~~~~~----i~~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~~~------~~~~~L~~l~i~ 229 (285)
+|++++|. ++.+. +.. ++|++|++.++.....+. + ..++|++|++.++.+.- ...++|+++++.
T Consensus 102 ~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 102 YLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp EEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred EEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 99999985 33221 222 799999999986445543 2 46889999999887432 123456777776
Q ss_pred cccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCcc
Q 041569 230 LDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVET 266 (285)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~ 266 (285)
.......+ ..+++.+++|+.|+++.+....
T Consensus 181 ~n~~~~~~-------~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 181 LSESAFLL-------EIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp CSBSTTHH-------HHHHHSTTTBSEEEEESCBCTT
T ss_pred cCcccccc-------hhhHhhcccccEEEccCCcccc
Confidence 53332211 1345668899999998776654
No 51
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.54 E-value=1.8e-08 Score=86.18 Aligned_cols=188 Identities=14% Similarity=0.132 Sum_probs=105.1
Q ss_pred hHHHHHHHHHHHCCCceEEEEeeeCCCccccCCccc--cCcCCccEEEEcCeeecC--C------CccccccceEEeeee
Q 041569 77 PLFDKWIELATENGLEVLDFMVIADENTYYALPQTI--FSAKLLTSLKLVGCKLEL--P------SFTCAHLKKLLLSEF 146 (285)
Q Consensus 77 ~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~~~~--~------~~~~~~L~~L~L~~~ 146 (285)
..+..........+++++++... .. ....|..+ ...++|++|+|++|.+.. . ...+++|++|+|.++
T Consensus 79 ~~~~~~~~~~~~~~L~~L~l~~n--~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n 155 (310)
T 4glp_A 79 QLLVGALRVLAYSRLKELTLEDL--KI-TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA 155 (310)
T ss_dssp HHHHHHHHHHHHSCCCEEEEESC--CC-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC
T ss_pred HHHHHHHHhcccCceeEEEeeCC--Ee-ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC
Confidence 34445555545578999999873 21 12333333 456778888888876653 1 124777888888877
Q ss_pred ecChHHHHHHHhCCCccceeeeecCCCcCe------EEEcc-CCcceEEEeecCCCceEE-------EeCCCccEEEEee
Q 041569 147 PLNDRELHHLISKCPLLEDLSISHCHSLGR------IMISS-NKLEHLLISSCYGLNALD-------VDAPRLLSFIFDL 212 (285)
Q Consensus 147 ~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~------~~i~~-~~L~~L~l~~~~~~~~~~-------~~~p~L~~l~~~~ 212 (285)
.++... ...+..+++|++|+++++.-.+. ..+.. ++|++|++.+|. +..+. -..++|++|++++
T Consensus 156 ~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~ 233 (310)
T 4glp_A 156 HSPAFS-CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSH 233 (310)
T ss_dssp SSCCCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTT
T ss_pred Ccchhh-HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCC
Confidence 663211 11244677788888877752211 11112 677777777774 32221 1347777777777
Q ss_pred CcEee------ecC---CCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCccCCCchhhhhhhhe
Q 041569 213 NPIPI------IST---NALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKL 279 (285)
Q Consensus 213 ~~~~~------~~~---~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~f~~L~~L 279 (285)
+.+.- ... ++|++++++...+...+... .++|+.|+|+.+.+...+....+.+|+.|
T Consensus 234 N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~----------~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L 299 (310)
T 4glp_A 234 NSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL----------PAKLRVLDLSSNRLNRAPQPDELPEVDNL 299 (310)
T ss_dssp SCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC----------CSCCSCEECCSCCCCSCCCTTSCCCCSCE
T ss_pred CCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh----------cCCCCEEECCCCcCCCCchhhhCCCccEE
Confidence 66321 111 46777777665555443311 26778888877777654333333334443
No 52
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.53 E-value=1.2e-07 Score=87.50 Aligned_cols=116 Identities=19% Similarity=0.182 Sum_probs=62.3
Q ss_pred CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC-CCccccccceEEeeeeecChHHHHHHHhCCCccceee
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL-PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLS 167 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 167 (285)
++++.+++... ....+|..+..+ +|++|++++|.+.. +...+++|++|.+.++......- ...+|+|+.|+
T Consensus 282 ~~L~~L~l~~~----~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~L~~L~ 353 (570)
T 2z63_A 282 TNVSSFSLVSV----TIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLD 353 (570)
T ss_dssp TTCSEEEEESC----EECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCC---CCBCTTCCEEE
T ss_pred CcccEEEecCc----cchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccc---cccCCCCCEEe
Confidence 45666666552 122455555555 77777777776654 33456667777776664421100 04567777777
Q ss_pred eecCCCcCeEE-Ec-----cCCcceEEEeecCCCceEE--E-eCCCccEEEEeeCc
Q 041569 168 ISHCHSLGRIM-IS-----SNKLEHLLISSCYGLNALD--V-DAPRLLSFIFDLNP 214 (285)
Q Consensus 168 l~~c~~~~~~~-i~-----~~~L~~L~l~~~~~~~~~~--~-~~p~L~~l~~~~~~ 214 (285)
+++|. ++... .. .++|+.|++.+|. +..+. + .+++|++|++.++.
T Consensus 354 l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~ 407 (570)
T 2z63_A 354 LSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSN 407 (570)
T ss_dssp CCSSC-CBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSE
T ss_pred CcCCc-cCccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCc
Confidence 76664 22221 11 1566677666663 22221 2 45666666666654
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.53 E-value=4.8e-09 Score=89.47 Aligned_cols=164 Identities=16% Similarity=0.129 Sum_probs=84.2
Q ss_pred CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC-C----CccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL-P----SFTCAHLKKLLLSEFPLNDRELHHLISKCPLL 163 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~----~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 163 (285)
++++.++++.. ....++..+..+++|++|+++++.+.. . ...+++|++|++.++.++... ...+..+++|
T Consensus 78 ~~L~~L~Ls~n----~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L 152 (306)
T 2z66_A 78 TSLKYLDLSFN----GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNGLSSL 152 (306)
T ss_dssp SCCCEEECCSC----SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS-TTTTTTCTTC
T ss_pred cccCEEECCCC----ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc-hhhcccCcCC
Confidence 45666655441 122344445556677777777765544 1 234667777777766542111 1124456777
Q ss_pred ceeeeecCCCcCeEE---Ecc-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCcEe------eecCCCcccceec
Q 041569 164 EDLSISHCHSLGRIM---ISS-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNPIP------IISTNALCPWNVT 229 (285)
Q Consensus 164 e~L~l~~c~~~~~~~---i~~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~~------~~~~~~L~~l~i~ 229 (285)
++|+++++.-.+... +.. ++|+.|+++++. +..+. + ..|+|++|+++++.+. +...++|+.++++
T Consensus 153 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 231 (306)
T 2z66_A 153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231 (306)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECT
T ss_pred CEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECC
Confidence 777777664211111 111 567777777663 33331 1 3466777777666521 1223466666666
Q ss_pred cccCCCCChhhHHHHHHHhccC-CCceEEEEEeCCCc
Q 041569 230 LDCDSNLDCDWFLSLKEFLGAS-SQIERLCIDFSSVE 265 (285)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~l~~~-~~L~~L~L~~~~~~ 265 (285)
...+..... ..+..+ ++|+.|+|+.+...
T Consensus 232 ~N~l~~~~~-------~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 232 LNHIMTSKK-------QELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp TSCCCBCSS-------SSCCCCCTTCCEEECTTCCEE
T ss_pred CCCCcccCH-------HHHHhhhccCCEEEccCCCee
Confidence 544433322 123334 36777777655554
No 54
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.52 E-value=8.2e-08 Score=81.42 Aligned_cols=114 Identities=20% Similarity=0.195 Sum_probs=55.6
Q ss_pred ccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEE-Ecc-CCcceE
Q 041569 112 IFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIM-ISS-NKLEHL 187 (285)
Q Consensus 112 ~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~-i~~-~~L~~L 187 (285)
+..+++|+.|++++|.+.. ....+++|++|+++++.+++- .-+..+++|+.|++++|. ++.+. +.. ++|+.|
T Consensus 86 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~---~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L 161 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI---NGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTL 161 (291)
T ss_dssp GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCC---GGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEE
T ss_pred cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCC---hhhcCCCCCCEEEccCCc-CCcchhhccCCCCCEE
Confidence 4445666666666665544 223456666666666655331 123455666666666553 22221 111 566666
Q ss_pred EEeecCCCceEE-E-eCCCccEEEEeeCcEe----eecCCCcccceecc
Q 041569 188 LISSCYGLNALD-V-DAPRLLSFIFDLNPIP----IISTNALCPWNVTL 230 (285)
Q Consensus 188 ~l~~~~~~~~~~-~-~~p~L~~l~~~~~~~~----~~~~~~L~~l~i~~ 230 (285)
++++|. +..+. + ..++|+.|+++++.+. +...++|+.+++..
T Consensus 162 ~L~~N~-l~~~~~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 162 SLEDNQ-ISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 209 (291)
T ss_dssp ECCSSC-CCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEE
T ss_pred EccCCc-cccchhhcCCCccCEEECCCCcCCCChhhccCCCCCEEECcC
Confidence 666654 11110 2 3456666666655421 12233555555544
No 55
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.49 E-value=1.6e-08 Score=89.21 Aligned_cols=173 Identities=12% Similarity=0.058 Sum_probs=114.2
Q ss_pred CCCceEEEEeeeCCCcc---ccCCccccCcCCccEEEEcCeeecC-----CC---ccc---------cccceEEeeeeec
Q 041569 89 NGLEVLDFMVIADENTY---YALPQTIFSAKLLTSLKLVGCKLEL-----PS---FTC---------AHLKKLLLSEFPL 148 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~---~~l~~~~~~~~~L~~L~L~~~~~~~-----~~---~~~---------~~L~~L~L~~~~~ 148 (285)
++++.|+++.. .... ..++..+..+++|++|+|++|.+.. .+ ..+ ++|++|+|.++.+
T Consensus 94 ~~L~~L~Ls~n--~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 94 PKLHTVRLSDN--AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171 (386)
T ss_dssp TTCCEEECCSC--CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred CcccEEECCCC--cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence 57888877663 2221 2355566678999999999988753 11 112 8999999999988
Q ss_pred ChHHHH---HHHhCCCccceeeeecCCCcCeE--------EEcc-CCcceEEEeecCCC-----ceEE---EeCCCccEE
Q 041569 149 NDRELH---HLISKCPLLEDLSISHCHSLGRI--------MISS-NKLEHLLISSCYGL-----NALD---VDAPRLLSF 208 (285)
Q Consensus 149 ~~~~l~---~l~~~cp~Le~L~l~~c~~~~~~--------~i~~-~~L~~L~l~~~~~~-----~~~~---~~~p~L~~l 208 (285)
++..+. ..+..+++|+.|++++|. ++.. .+.. ++|+.|++.+|. + ..+. ...|+|++|
T Consensus 172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 172 ENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEE
T ss_pred CcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEE
Confidence 766555 456689999999999885 3311 1122 789999999885 3 2221 256899999
Q ss_pred EEeeCcEee------------ecCCCcccceeccccCCCCChhhHHHHHHHh-ccCCCceEEEEEeCCCccCC
Q 041569 209 IFDLNPIPI------------ISTNALCPWNVTLDCDSNLDCDWFLSLKEFL-GASSQIERLCIDFSSVETNS 268 (285)
Q Consensus 209 ~~~~~~~~~------------~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l-~~~~~L~~L~L~~~~~~~~~ 268 (285)
+++++.+.- ...++|+.++++...+.. .....+...+ ..+++|+.|+++.+......
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~---~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL---DAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH---HHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH---HHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 998887421 125788888887644422 1112233444 66899999999887776533
No 56
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.49 E-value=9.9e-08 Score=85.71 Aligned_cols=81 Identities=14% Similarity=0.123 Sum_probs=46.8
Q ss_pred CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC----C--CccccccceEEeeeeecChHHHHHHHhCCCc
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL----P--SFTCAHLKKLLLSEFPLNDRELHHLISKCPL 162 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~----~--~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~ 162 (285)
+++++|+++. ... ....|..+..+++|++|++++|.+.. . ...+++|++|+|.++.++...-..++..+++
T Consensus 79 ~~L~~L~Ls~--n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 155 (455)
T 3v47_A 79 SSLIILKLDY--NQF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR 155 (455)
T ss_dssp TTCCEEECTT--CTT-CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred ccCCEEeCCC--Ccc-CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc
Confidence 4566666554 111 11234445556777777777776653 1 3456777777777776643322223556777
Q ss_pred cceeeeecCC
Q 041569 163 LEDLSISHCH 172 (285)
Q Consensus 163 Le~L~l~~c~ 172 (285)
|++|+++++.
T Consensus 156 L~~L~L~~n~ 165 (455)
T 3v47_A 156 FHVLDLTFNK 165 (455)
T ss_dssp CCEEECTTCC
T ss_pred ccEEeCCCCc
Confidence 7777777663
No 57
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.48 E-value=3.1e-08 Score=92.46 Aligned_cols=135 Identities=18% Similarity=0.158 Sum_probs=93.4
Q ss_pred HCCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccce
Q 041569 88 ENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLED 165 (285)
Q Consensus 88 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 165 (285)
.++++.|+++. +. ...++. +..+++|+.|.|++|.+.. ....+++|+.|+|.++.+++- .-+..+|+|+.
T Consensus 64 l~~L~~L~Ls~--N~--l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~ 135 (605)
T 1m9s_A 64 LPNVTKLFLNG--NK--LTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDI---NGLVHLPQLES 135 (605)
T ss_dssp CTTCCEEECTT--SC--CCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCC---GGGGGCTTCSE
T ss_pred CCCCCEEEeeC--CC--CCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCC---ccccCCCccCE
Confidence 36788888765 22 222333 6678999999999998766 335689999999999988542 12667899999
Q ss_pred eeeecCCCcCeEE-Ecc-CCcceEEEeecCCCceE-EE-eCCCccEEEEeeCcEe----eecCCCcccceecccc
Q 041569 166 LSISHCHSLGRIM-ISS-NKLEHLLISSCYGLNAL-DV-DAPRLLSFIFDLNPIP----IISTNALCPWNVTLDC 232 (285)
Q Consensus 166 L~l~~c~~~~~~~-i~~-~~L~~L~l~~~~~~~~~-~~-~~p~L~~l~~~~~~~~----~~~~~~L~~l~i~~~~ 232 (285)
|++++|. ++.+. +.. ++|+.|++++|. +..+ .+ .+|+|+.|+++++.+. +...++|+.+++....
T Consensus 136 L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 136 LYLGNNK-ITDITVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp EECCSSC-CCCCGGGGSCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEE
T ss_pred EECCCCc-cCCchhhcccCCCCEEECcCCc-CCCchhhccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCc
Confidence 9999885 33331 122 889999999986 2221 13 5789999999988742 2334578888876643
No 58
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.48 E-value=7.9e-08 Score=82.36 Aligned_cols=165 Identities=17% Similarity=0.042 Sum_probs=105.5
Q ss_pred CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccc
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLE 164 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 164 (285)
+.++.++++. ...-...+|..+..+++|++|++++|.+.. ....+++|++|++.++.++.. +...+..+++|+
T Consensus 76 ~~L~~L~L~~--~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~ 152 (313)
T 1ogq_A 76 PYLNFLYIGG--INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLV 152 (313)
T ss_dssp TTCSEEEEEE--ETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCC
T ss_pred CCCCeeeCCC--CCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCC
Confidence 5788888873 112223567777778899999999887753 234678899999988876421 112245688999
Q ss_pred eeeeecCCCcCeEE--Ecc-C-CcceEEEeecCCCce-EE--EeCCCccEEEEeeCcEe------eecCCCcccceeccc
Q 041569 165 DLSISHCHSLGRIM--ISS-N-KLEHLLISSCYGLNA-LD--VDAPRLLSFIFDLNPIP------IISTNALCPWNVTLD 231 (285)
Q Consensus 165 ~L~l~~c~~~~~~~--i~~-~-~L~~L~l~~~~~~~~-~~--~~~p~L~~l~~~~~~~~------~~~~~~L~~l~i~~~ 231 (285)
+|+++++.-...+. +.. + +|+.|++.++. +.. +. +....|+.|+++++.+. +...++|+.++++..
T Consensus 153 ~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 231 (313)
T 1ogq_A 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231 (313)
T ss_dssp EEECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred eEECcCCcccCcCCHHHhhhhhcCcEEECcCCe-eeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCC
Confidence 99998875211111 111 3 88899888874 221 11 11223889998888743 233457888888765
Q ss_pred cCCCCChhhHHHHHHHhccCCCceEEEEEeCCCc
Q 041569 232 CDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVE 265 (285)
Q Consensus 232 ~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~ 265 (285)
.+..... .+..+++|+.|+++.+...
T Consensus 232 ~l~~~~~--------~~~~l~~L~~L~Ls~N~l~ 257 (313)
T 1ogq_A 232 SLAFDLG--------KVGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp EECCBGG--------GCCCCTTCCEEECCSSCCE
T ss_pred ceeeecC--------cccccCCCCEEECcCCccc
Confidence 4432211 1466899999999988876
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.46 E-value=3.4e-07 Score=85.72 Aligned_cols=112 Identities=25% Similarity=0.180 Sum_probs=52.3
Q ss_pred CCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecCCCccccccceEEeeeeecChHHHHHHHhCCCccceeeee
Q 041569 90 GLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLELPSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSIS 169 (285)
Q Consensus 90 ~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~ 169 (285)
+++.++++. . ....+|..+. ++|+.|++++|.+...+..+++|++|+|+++.++. +-..+++|++|+++
T Consensus 41 ~l~~L~ls~--n--~L~~lp~~l~--~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~-----lp~~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGE--S--GLTTLPDCLP--AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTS-----LPVLPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCS--S--CCSCCCSCCC--TTCSEEEECSCCCSCCCCCCTTCCEEEECSCCCSC-----CCCCCTTCCEEEEC
T ss_pred CCcEEEecC--C--CcCccChhhC--CCCcEEEecCCCCCCCCCcCCCCCEEEcCCCcCCc-----CCCCCCCCCEEECc
Confidence 455555543 1 1224444333 56666666666555422245666666666665531 11145666666666
Q ss_pred cCCCcCeEEEccCCcceEEEeecCCCceEEEeCCCccEEEEeeCc
Q 041569 170 HCHSLGRIMISSNKLEHLLISSCYGLNALDVDAPRLLSFIFDLNP 214 (285)
Q Consensus 170 ~c~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~p~L~~l~~~~~~ 214 (285)
+|. ++.+.-..++|+.|++.++. +..+....|+|++|+++++.
T Consensus 110 ~N~-l~~l~~~l~~L~~L~L~~N~-l~~lp~~l~~L~~L~Ls~N~ 152 (622)
T 3g06_A 110 SNP-LTHLPALPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDNQ 152 (622)
T ss_dssp SCC-CCCCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC
T ss_pred CCc-CCCCCCCCCCcCEEECCCCC-CCcCCCCCCCCCEEECcCCc
Confidence 553 22111122445555555442 22222233455555554443
No 60
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.46 E-value=1.1e-07 Score=81.86 Aligned_cols=96 Identities=16% Similarity=0.187 Sum_probs=61.0
Q ss_pred CCCceEEEEeeeCCCccccCCc-cccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569 89 NGLEVLDFMVIADENTYYALPQ-TIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLL 163 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 163 (285)
+.++.++++. .. ...++. .+..+++|++|++++|.+.. ....+++|++|++.++.++.-. ...+++|
T Consensus 52 ~~l~~L~L~~--n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~----~~~~~~L 123 (330)
T 1xku_A 52 PDTALLDLQN--NK--ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP----EKMPKTL 123 (330)
T ss_dssp TTCCEEECCS--SC--CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCC----SSCCTTC
T ss_pred CCCeEEECCC--Cc--CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccC----hhhcccc
Confidence 4677777665 22 223333 45568999999999987765 2346899999999998764211 1224899
Q ss_pred ceeeeecCCCcCeEEE---cc-CCcceEEEeecC
Q 041569 164 EDLSISHCHSLGRIMI---SS-NKLEHLLISSCY 193 (285)
Q Consensus 164 e~L~l~~c~~~~~~~i---~~-~~L~~L~l~~~~ 193 (285)
++|+++++. ++.+.. .. ++|+.|++.++.
T Consensus 124 ~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 156 (330)
T 1xku_A 124 QELRVHENE-ITKVRKSVFNGLNQMIVVELGTNP 156 (330)
T ss_dssp CEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSC
T ss_pred cEEECCCCc-ccccCHhHhcCCccccEEECCCCc
Confidence 999999874 222211 11 566666666653
No 61
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.46 E-value=6.1e-08 Score=90.35 Aligned_cols=80 Identities=21% Similarity=0.181 Sum_probs=38.7
Q ss_pred CCCceEEEEeeeCCCccccCCc-cccCcCCccEEEEcCeeecC------CCccccccceEEeeeeecChHHHHHHHhCCC
Q 041569 89 NGLEVLDFMVIADENTYYALPQ-TIFSAKLLTSLKLVGCKLEL------PSFTCAHLKKLLLSEFPLNDRELHHLISKCP 161 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~------~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp 161 (285)
++++.+++... ... ..++. .+..+++|+.|++++|.+.. ....+++|++|++.++.++... ...+..++
T Consensus 325 ~~L~~L~l~~n--~~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~ 400 (606)
T 3t6q_A 325 PSLTHLSIKGN--TKR-LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK-TEAFKECP 400 (606)
T ss_dssp TTCSEEECCSC--SSC-CBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEEC-TTTTTTCT
T ss_pred CcCCEEECCCC--Ccc-cccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCC-HHHhcCCc
Confidence 46666666542 111 12222 23445666666666665432 1234566666666665442110 11133456
Q ss_pred ccceeeeecCC
Q 041569 162 LLEDLSISHCH 172 (285)
Q Consensus 162 ~Le~L~l~~c~ 172 (285)
+|+.|++++|.
T Consensus 401 ~L~~L~l~~n~ 411 (606)
T 3t6q_A 401 QLELLDLAFTR 411 (606)
T ss_dssp TCSEEECTTCC
T ss_pred cCCeEECCCCc
Confidence 66666666553
No 62
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.44 E-value=1.1e-07 Score=88.78 Aligned_cols=162 Identities=17% Similarity=0.193 Sum_probs=106.7
Q ss_pred CCCceEEEEeeeCCCccccCC-ccccCcCCccEEEEcCeeecC-C---CccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569 89 NGLEVLDFMVIADENTYYALP-QTIFSAKLLTSLKLVGCKLEL-P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLL 163 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~-~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 163 (285)
++++.|++.. .. ...++ ..+..+++|+.|+|++|.+.. + ...+++|++|+|.++.++.-. ..++..+++|
T Consensus 75 ~~L~~L~L~~--n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L 149 (597)
T 3oja_B 75 RQVELLNLND--LQ--IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP-RGIFHNTPKL 149 (597)
T ss_dssp CCCSEEECTT--SC--CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTC
T ss_pred CCCcEEECCC--CC--CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCC-HHHhccCCCC
Confidence 5788887765 22 12233 345567899999999887765 2 246889999999988774211 1224678899
Q ss_pred ceeeeecCCCcCeEE---Ecc-CCcceEEEeecCCCceEEE-eCCCccEEEEeeCcEe-eecCCCcccceeccccCCCCC
Q 041569 164 EDLSISHCHSLGRIM---ISS-NKLEHLLISSCYGLNALDV-DAPRLLSFIFDLNPIP-IISTNALCPWNVTLDCDSNLD 237 (285)
Q Consensus 164 e~L~l~~c~~~~~~~---i~~-~~L~~L~l~~~~~~~~~~~-~~p~L~~l~~~~~~~~-~~~~~~L~~l~i~~~~~~~~~ 237 (285)
+.|++++|. ++.+. +.. ++|+.|++.++. +..+.. ..|+|+.|.+.++.+. +...+.|+.++++...+...+
T Consensus 150 ~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~ 227 (597)
T 3oja_B 150 TTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR 227 (597)
T ss_dssp CEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSC-CSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEE
T ss_pred CEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCC-CCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccc
Confidence 999999885 33322 222 789999998884 444444 5688999988887743 344457888888765544333
Q ss_pred hhhHHHHHHHhccCCCceEEEEEeCCCccC
Q 041569 238 CDWFLSLKEFLGASSQIERLCIDFSSVETN 267 (285)
Q Consensus 238 ~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~ 267 (285)
.. ..++|+.|+|+.+.....
T Consensus 228 ~~----------~~~~L~~L~L~~n~l~~~ 247 (597)
T 3oja_B 228 GP----------VNVELTILKLQHNNLTDT 247 (597)
T ss_dssp CS----------CCSCCCEEECCSSCCCCC
T ss_pred cc----------cCCCCCEEECCCCCCCCC
Confidence 21 236899999988777653
No 63
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.44 E-value=3.8e-08 Score=94.57 Aligned_cols=146 Identities=19% Similarity=0.143 Sum_probs=84.1
Q ss_pred cccCcCCccEEEEcCeeecC--C---CccccccceEEeeeeecChHHHH--HHHhCCCccceeeeecCCCcCeEEEcc-C
Q 041569 111 TIFSAKLLTSLKLVGCKLEL--P---SFTCAHLKKLLLSEFPLNDRELH--HLISKCPLLEDLSISHCHSLGRIMISS-N 182 (285)
Q Consensus 111 ~~~~~~~L~~L~L~~~~~~~--~---~~~~~~L~~L~L~~~~~~~~~l~--~l~~~cp~Le~L~l~~c~~~~~~~i~~-~ 182 (285)
.+..+++|++|+|++|.+.. + ...+++|++|+|.++.++..... ..+..|++|++|++++|.-........ +
T Consensus 121 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~ 200 (768)
T 3rgz_A 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV 200 (768)
T ss_dssp GGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCT
T ss_pred HHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCC
Confidence 55567777777777776543 1 13567777777777766332222 225677788888877774222222222 6
Q ss_pred CcceEEEeecCCCceEE-E-eCCCccEEEEeeCcEe------eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCc
Q 041569 183 KLEHLLISSCYGLNALD-V-DAPRLLSFIFDLNPIP------IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQI 254 (285)
Q Consensus 183 ~L~~L~l~~~~~~~~~~-~-~~p~L~~l~~~~~~~~------~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L 254 (285)
+|++|++.+|.-...+. + ..++|++|++.++.+. +...++|+.++++...+...... ..+++|
T Consensus 201 ~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~---------~~l~~L 271 (768)
T 3rgz_A 201 NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP---------LPLKSL 271 (768)
T ss_dssp TCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC---------CCCTTC
T ss_pred cCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc---------cccCCC
Confidence 78888887775111111 2 4677888887777632 23345677777765333211110 146778
Q ss_pred eEEEEEeCCCc
Q 041569 255 ERLCIDFSSVE 265 (285)
Q Consensus 255 ~~L~L~~~~~~ 265 (285)
+.|++..+...
T Consensus 272 ~~L~L~~n~l~ 282 (768)
T 3rgz_A 272 QYLSLAENKFT 282 (768)
T ss_dssp CEEECCSSEEE
T ss_pred CEEECcCCccC
Confidence 88877766554
No 64
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.43 E-value=4.2e-07 Score=83.11 Aligned_cols=165 Identities=15% Similarity=0.106 Sum_probs=111.4
Q ss_pred CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecCh-HHHHHHHhCCCcc
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLND-RELHHLISKCPLL 163 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~cp~L 163 (285)
.+++.++++.. ......++ ..+++|++|++++|.+.. ....+++|++|+++++.++. ..+...+..+++|
T Consensus 302 ~~L~~L~l~~n--~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L 376 (520)
T 2z7x_B 302 MNIKNFTVSGT--RMVHMLCP---SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL 376 (520)
T ss_dssp CCCSEEEEESS--CCCCCCCC---SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC
T ss_pred CceeEEEcCCC--ccccccch---hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC
Confidence 46888887762 22211111 357899999999998765 22468999999999998864 3455567889999
Q ss_pred ceeeeecCCCcCeEE---Ecc-CCcceEEEeecCCCceEEEe-CCCccEEEEeeCcEe-----eecCCCcccceeccccC
Q 041569 164 EDLSISHCHSLGRIM---ISS-NKLEHLLISSCYGLNALDVD-APRLLSFIFDLNPIP-----IISTNALCPWNVTLDCD 233 (285)
Q Consensus 164 e~L~l~~c~~~~~~~---i~~-~~L~~L~l~~~~~~~~~~~~-~p~L~~l~~~~~~~~-----~~~~~~L~~l~i~~~~~ 233 (285)
+.|++++|.-...+. +.. ++|+.|++++|.-...+... .++|+.|+++++.+. +...++|++++++...+
T Consensus 377 ~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l 456 (520)
T 2z7x_B 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQL 456 (520)
T ss_dssp CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcC
Confidence 999999886322122 122 78999999998511111111 278999999888743 22345788888877666
Q ss_pred CCCChhhHHHHHHHhccCCCceEEEEEeCCCc
Q 041569 234 SNLDCDWFLSLKEFLGASSQIERLCIDFSSVE 265 (285)
Q Consensus 234 ~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~ 265 (285)
...+.. .+..+++|+.|+++.+...
T Consensus 457 ~~l~~~-------~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 457 KSVPDG-------IFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CCCCTT-------TTTTCTTCCEEECCSSCBC
T ss_pred CccCHH-------HhccCCcccEEECcCCCCc
Confidence 655442 4567888999988777664
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.43 E-value=5.4e-08 Score=82.88 Aligned_cols=167 Identities=17% Similarity=0.099 Sum_probs=112.1
Q ss_pred CCCceEEEEeeeCCCcc-ccCCccccCcCCccEEEEcCeeecC---CCccccccceEEeeeeecChHHHHHHHhCCCccc
Q 041569 89 NGLEVLDFMVIADENTY-YALPQTIFSAKLLTSLKLVGCKLEL---PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLE 164 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 164 (285)
++++.+++.. ..... ...+.....+++|+.|++++|.+.. ....+++|++|++.++.++...-...+..+++|+
T Consensus 52 ~~L~~L~L~~--n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 129 (306)
T 2z66_A 52 TQLTKLSLSS--NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129 (306)
T ss_dssp TTCSEEECCS--SCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCC
T ss_pred ccCCEEECCC--CccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCC
Confidence 4688888765 22211 1224455568999999999997655 2346899999999998774322212356789999
Q ss_pred eeeeecCCCcCeEE---Ecc-CCcceEEEeecCCCce--EE--E-eCCCccEEEEeeCcEee------ecCCCcccceec
Q 041569 165 DLSISHCHSLGRIM---ISS-NKLEHLLISSCYGLNA--LD--V-DAPRLLSFIFDLNPIPI------ISTNALCPWNVT 229 (285)
Q Consensus 165 ~L~l~~c~~~~~~~---i~~-~~L~~L~l~~~~~~~~--~~--~-~~p~L~~l~~~~~~~~~------~~~~~L~~l~i~ 229 (285)
.|++++|. ++... +.. ++|+.|++.++. +.. +. + ..++|++|+++++.+.- ...++|+.++++
T Consensus 130 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 207 (306)
T 2z66_A 130 YLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207 (306)
T ss_dssp EEECTTSC-CEECSTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred EEECCCCc-CCccchhhcccCcCCCEEECCCCc-cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC
Confidence 99999885 22111 112 789999998885 221 21 2 46899999999887422 234578888888
Q ss_pred cccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCcc
Q 041569 230 LDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVET 266 (285)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~ 266 (285)
...+...+.. .+..+++|+.|+++.+....
T Consensus 208 ~N~l~~~~~~-------~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 208 HNNFFSLDTF-------PYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp TSCCSBCCSG-------GGTTCTTCCEEECTTSCCCB
T ss_pred CCccCccChh-------hccCcccCCEeECCCCCCcc
Confidence 7666554432 24678999999998887765
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.43 E-value=1.1e-07 Score=81.45 Aligned_cols=156 Identities=16% Similarity=0.167 Sum_probs=111.2
Q ss_pred CcCCccEEEEcCeeecC-C---CccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEccCCcceEEE
Q 041569 114 SAKLLTSLKLVGCKLEL-P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISSNKLEHLLI 189 (285)
Q Consensus 114 ~~~~L~~L~L~~~~~~~-~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~~~L~~L~l 189 (285)
.+++|++|+|++|.+.. . ...+++|++|+|.++.++... . +..+++|++|++++|. ++.+. ..++|+.|++
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~-l~~l~-~~~~L~~L~l 106 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY-VQELL-VGPSIETLHA 106 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSE-EEEEE-ECTTCCEEEC
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCc-ccccc-CCCCcCEEEC
Confidence 36799999999998776 2 246899999999999773211 1 6789999999999885 44333 2289999999
Q ss_pred eecCCCceEEE-eCCCccEEEEeeCcEe------eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeC
Q 041569 190 SSCYGLNALDV-DAPRLLSFIFDLNPIP------IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFS 262 (285)
Q Consensus 190 ~~~~~~~~~~~-~~p~L~~l~~~~~~~~------~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~ 262 (285)
.++ .+..+.. ..++|++|++.++.+. +...++|+.++++...+..... ..+...+++|+.|+++.+
T Consensus 107 ~~n-~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 107 ANN-NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF------AELAASSDTLEHLNLQYN 179 (317)
T ss_dssp CSS-CCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG------GGGGGGTTTCCEEECTTS
T ss_pred CCC-ccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH------HHHhhccCcCCEEECCCC
Confidence 998 4555554 6789999999998742 2234678888887765544332 134457899999999888
Q ss_pred CCccCCCchhhhhhhheee
Q 041569 263 SVETNSEDATLHFLYKLRL 281 (285)
Q Consensus 263 ~~~~~~~~~~f~~L~~L~l 281 (285)
.....+....+.+|+.|.+
T Consensus 180 ~l~~~~~~~~l~~L~~L~L 198 (317)
T 3o53_A 180 FIYDVKGQVVFAKLKTLDL 198 (317)
T ss_dssp CCCEEECCCCCTTCCEEEC
T ss_pred cCcccccccccccCCEEEC
Confidence 8876443333555555543
No 67
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.43 E-value=5.8e-08 Score=75.21 Aligned_cols=122 Identities=23% Similarity=0.112 Sum_probs=76.5
Q ss_pred CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCcccee
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDL 166 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 166 (285)
++++++.+.. +......+|..+..+++|+.|++++|.+.. ....+++|++|+++++.++.. +......+++|+.|
T Consensus 24 ~~L~~L~l~~--n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDN--CKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCS--CBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEE
T ss_pred ccCCEEECCC--CCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEE
Confidence 4688887776 333323566666678889999999887765 334578899999998877542 33445568899999
Q ss_pred eeecCCCcCeEE----Ecc-CCcceEEEeecC--CCce----EEEeCCCccEEEEeeCc
Q 041569 167 SISHCHSLGRIM----ISS-NKLEHLLISSCY--GLNA----LDVDAPRLLSFIFDLNP 214 (285)
Q Consensus 167 ~l~~c~~~~~~~----i~~-~~L~~L~l~~~~--~~~~----~~~~~p~L~~l~~~~~~ 214 (285)
++++|. ++.+. +.. ++|+.|++.++. .... .....|+|++|++.++.
T Consensus 101 ~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 101 NLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp ECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred eccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 998884 33321 111 667777777664 1111 11134566666555543
No 68
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.42 E-value=4.2e-07 Score=83.87 Aligned_cols=77 Identities=19% Similarity=0.114 Sum_probs=47.8
Q ss_pred CCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHH-HHHHHhCCCcccee
Q 041569 90 GLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRE-LHHLISKCPLLEDL 166 (285)
Q Consensus 90 ~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~-l~~l~~~cp~Le~L 166 (285)
+++++++... ... .+|. ..+++|+.|.++++.... ....+++|++|++.++.++... ....+..+++|+.|
T Consensus 305 ~L~~L~l~~n--~~~--~l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L 378 (570)
T 2z63_A 305 GWQHLELVNC--KFG--QFPT--LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378 (570)
T ss_dssp CCSEEEEESC--BCS--SCCB--CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEE
T ss_pred CccEEeeccC--ccc--ccCc--ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEE
Confidence 6778877762 222 4443 356788888888876554 3356788888888877663221 11224467777777
Q ss_pred eeecCC
Q 041569 167 SISHCH 172 (285)
Q Consensus 167 ~l~~c~ 172 (285)
++++|.
T Consensus 379 ~l~~n~ 384 (570)
T 2z63_A 379 DLSFNG 384 (570)
T ss_dssp ECCSCS
T ss_pred ECCCCc
Confidence 777764
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.42 E-value=3.4e-08 Score=84.60 Aligned_cols=175 Identities=15% Similarity=0.150 Sum_probs=101.0
Q ss_pred HCCCceEEEEeeeCCCccccCCccc--cCcCCccEEEEcCeeecC-CC--ccc-----cccceEEeeeeecChHHHHHHH
Q 041569 88 ENGLEVLDFMVIADENTYYALPQTI--FSAKLLTSLKLVGCKLEL-PS--FTC-----AHLKKLLLSEFPLNDRELHHLI 157 (285)
Q Consensus 88 ~~~l~~L~l~~~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~~~~-~~--~~~-----~~L~~L~L~~~~~~~~~l~~l~ 157 (285)
..++++++++.. ... ...|..+ ...++|++|++++|.+.. +. ..+ ++|++|+|.++.++...- ..+
T Consensus 94 l~~L~~L~L~~n--~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~-~~~ 169 (312)
T 1wwl_A 94 ISGLQELTLENL--EVT-GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC-EQV 169 (312)
T ss_dssp TSCCCEEEEEEE--BCB-SCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCT-TTC
T ss_pred cCCccEEEccCC--ccc-chhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchH-HHh
Confidence 357888877763 111 2344443 456788888888876654 11 122 778888888776632211 124
Q ss_pred hCCCccceeeeecCCCcCeE----EE--cc-CCcceEEEeecCCCce---EE----EeCCCccEEEEeeCcEee------
Q 041569 158 SKCPLLEDLSISHCHSLGRI----MI--SS-NKLEHLLISSCYGLNA---LD----VDAPRLLSFIFDLNPIPI------ 217 (285)
Q Consensus 158 ~~cp~Le~L~l~~c~~~~~~----~i--~~-~~L~~L~l~~~~~~~~---~~----~~~p~L~~l~~~~~~~~~------ 217 (285)
..+++|++|+++++.-.+.. .+ .. ++|++|++.++. +.. +. ...++|++|+++++.+.-
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 248 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence 46778888888877522211 11 22 678888888774 331 11 134788888887776321
Q ss_pred -ecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCccCCCchhhhhhhhee
Q 041569 218 -ISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKLR 280 (285)
Q Consensus 218 -~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~f~~L~~L~ 280 (285)
...++|+.++++...+..++... .++|+.|+|+.+.+...+. |..+++|+
T Consensus 249 ~~~l~~L~~L~Ls~N~l~~ip~~~----------~~~L~~L~Ls~N~l~~~p~---~~~l~~L~ 299 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTGLKQVPKGL----------PAKLSVLDLSYNRLDRNPS---PDELPQVG 299 (312)
T ss_dssp CCCCTTCCEEECTTSCCSSCCSSC----------CSEEEEEECCSSCCCSCCC---TTTSCEEE
T ss_pred hhhcCCCCEEECCCCccChhhhhc----------cCCceEEECCCCCCCCChh---HhhCCCCC
Confidence 11246777777765555443311 1688888888887776543 44444444
No 70
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.42 E-value=2.2e-08 Score=93.31 Aligned_cols=146 Identities=15% Similarity=0.068 Sum_probs=63.1
Q ss_pred CcCCccEEEEcCeeecC---CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeE--EEcc-CCcceE
Q 041569 114 SAKLLTSLKLVGCKLEL---PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRI--MISS-NKLEHL 187 (285)
Q Consensus 114 ~~~~L~~L~L~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~--~i~~-~~L~~L 187 (285)
.+++|+.|++++|.+.. ....+++|++|++.++.++...-...+..+++|+.|++++|.-.... .+.. ++|+.|
T Consensus 374 ~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 453 (606)
T 3vq2_A 374 GTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 453 (606)
T ss_dssp CCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred cCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEE
Confidence 34445555554443322 12234555555555554422111112334555555555555311100 0111 456666
Q ss_pred EEeecCCCc-eEE--E-eCCCccEEEEeeCcEe------eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEE
Q 041569 188 LISSCYGLN-ALD--V-DAPRLLSFIFDLNPIP------IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERL 257 (285)
Q Consensus 188 ~l~~~~~~~-~~~--~-~~p~L~~l~~~~~~~~------~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L 257 (285)
++.+|.-.. .+. + ..++|++|+++++.+. +...++|+.++++...+..... ..+..+++|+.|
T Consensus 454 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------~~~~~l~~L~~L 526 (606)
T 3vq2_A 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS-------SHYNQLYSLSTL 526 (606)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG-------GGTTTCTTCCEE
T ss_pred ECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH-------HHccCCCcCCEE
Confidence 665553111 011 1 3456666666655421 1122355555555443333221 233455666666
Q ss_pred EEEeCCCcc
Q 041569 258 CIDFSSVET 266 (285)
Q Consensus 258 ~L~~~~~~~ 266 (285)
+|+.+....
T Consensus 527 ~l~~N~l~~ 535 (606)
T 3vq2_A 527 DCSFNRIET 535 (606)
T ss_dssp ECTTSCCCC
T ss_pred ECCCCcCcc
Confidence 665555543
No 71
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.41 E-value=1.1e-07 Score=91.29 Aligned_cols=97 Identities=24% Similarity=0.244 Sum_probs=42.2
Q ss_pred CcCCccEEEEcCeeecC-C------CccccccceEEeeeeecCh-HHHHHHHhCCCccceeeeecCCCcCeEE-Ecc-CC
Q 041569 114 SAKLLTSLKLVGCKLEL-P------SFTCAHLKKLLLSEFPLND-RELHHLISKCPLLEDLSISHCHSLGRIM-ISS-NK 183 (285)
Q Consensus 114 ~~~~L~~L~L~~~~~~~-~------~~~~~~L~~L~L~~~~~~~-~~l~~l~~~cp~Le~L~l~~c~~~~~~~-i~~-~~ 183 (285)
.+++|++|++++|.+.. . ...+++|++|++.++.++. .. ...+++|++|++++|.-...+. +.. ++
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~ 224 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIPFLGDCSA 224 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB----CTTCTTCCEEECCSSCCCSCCCBCTTCCS
T ss_pred cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC----cccCCcCCEEECcCCcCCCCCcccccCCC
Confidence 34555555555554432 0 2345555555555554421 11 1345555555555553211111 111 45
Q ss_pred cceEEEeecCCCceE--EE-eCCCccEEEEeeCc
Q 041569 184 LEHLLISSCYGLNAL--DV-DAPRLLSFIFDLNP 214 (285)
Q Consensus 184 L~~L~l~~~~~~~~~--~~-~~p~L~~l~~~~~~ 214 (285)
|++|++.+|.-...+ .+ ..++|++|++.++.
T Consensus 225 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 258 (768)
T 3rgz_A 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258 (768)
T ss_dssp CCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSC
T ss_pred CCEEECcCCcCCCcccHHHhcCCCCCEEECCCCc
Confidence 555555555311010 01 34555555555544
No 72
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.41 E-value=4.9e-07 Score=84.62 Aligned_cols=53 Identities=23% Similarity=0.183 Sum_probs=22.8
Q ss_pred CCccceeeeecCCCcCeEEEccCCcceEEEeecCCCceEEEeCCCccEEEEeeCc
Q 041569 160 CPLLEDLSISHCHSLGRIMISSNKLEHLLISSCYGLNALDVDAPRLLSFIFDLNP 214 (285)
Q Consensus 160 cp~Le~L~l~~c~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~p~L~~l~~~~~~ 214 (285)
+++|+.|++++|. ++.+.-..++|+.|.+.+|. +..+.-..++|++|+++++.
T Consensus 180 ~~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~-l~~l~~~~~~L~~L~Ls~N~ 232 (622)
T 3g06_A 180 PSGLQELSVSDNQ-LASLPTLPSELYKLWAYNNR-LTSLPALPSGLKELIVSGNR 232 (622)
T ss_dssp CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSC
T ss_pred CCCCcEEECCCCC-CCCCCCccchhhEEECcCCc-ccccCCCCCCCCEEEccCCc
Confidence 4556666666553 22211111445555555442 22222223455555555544
No 73
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.40 E-value=1.7e-07 Score=77.60 Aligned_cols=140 Identities=12% Similarity=0.119 Sum_probs=63.5
Q ss_pred CCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEE---cc-CCcceE
Q 041569 116 KLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMI---SS-NKLEHL 187 (285)
Q Consensus 116 ~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i---~~-~~L~~L 187 (285)
++++.|+|+++.+.. ....+++|++|+|.++.++... ...+..+++|+.|+++++. ++.+.. .. ++|+.|
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC-HhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEE
Confidence 355555555555443 1123555555555555442211 1113345555555555543 221111 11 455555
Q ss_pred EEeecCCCceEE---E-eCCCccEEEEeeCcEe------eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEE
Q 041569 188 LISSCYGLNALD---V-DAPRLLSFIFDLNPIP------IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERL 257 (285)
Q Consensus 188 ~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~~------~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L 257 (285)
++.++. +..+. + ..++|+.|+++++.+. +...++|+.++++...+...+. ..+..+++|+.|
T Consensus 113 ~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L 184 (251)
T 3m19_A 113 YLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH-------GAFDRLGKLQTI 184 (251)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-------TTTTTCTTCCEE
T ss_pred EcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH-------HHHhCCCCCCEE
Confidence 555552 22221 1 2455666666555421 1122355555555544433332 234456666666
Q ss_pred EEEeCCCc
Q 041569 258 CIDFSSVE 265 (285)
Q Consensus 258 ~L~~~~~~ 265 (285)
+|+.+...
T Consensus 185 ~l~~N~~~ 192 (251)
T 3m19_A 185 TLFGNQFD 192 (251)
T ss_dssp ECCSCCBC
T ss_pred EeeCCcee
Confidence 66655543
No 74
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.39 E-value=1.6e-07 Score=78.50 Aligned_cols=139 Identities=16% Similarity=0.096 Sum_probs=86.4
Q ss_pred cCcCCccEEEEcCeeecC-C-CccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeE-EEccCCcceEEE
Q 041569 113 FSAKLLTSLKLVGCKLEL-P-SFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRI-MISSNKLEHLLI 189 (285)
Q Consensus 113 ~~~~~L~~L~L~~~~~~~-~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~-~i~~~~L~~L~l 189 (285)
..+++|+.|++++|.+.. . ...+++|++|+|+++.+++-.- +..+++|+.|+++++. ++.+ .+..++|+.|++
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~-l~~l~~~~~~~L~~L~L 113 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNR-LKNLNGIPSACLSRLFL 113 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSC-CSCCTTCCCSSCCEEEC
T ss_pred hhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCc-cCCcCccccCcccEEEc
Confidence 346777888888776655 2 2357778888888777643211 5677888888888774 2211 111167888888
Q ss_pred eecCCCceEE-E-eCCCccEEEEeeCcEe----eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCC
Q 041569 190 SSCYGLNALD-V-DAPRLLSFIFDLNPIP----IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSS 263 (285)
Q Consensus 190 ~~~~~~~~~~-~-~~p~L~~l~~~~~~~~----~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~ 263 (285)
.++. +..+. + ..++|+.|+++++.+. +...++|+.++++...+... ..+..+++|+.|+++.+.
T Consensus 114 ~~N~-l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~---------~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 114 DNNE-LRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT---------GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CSSC-CSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC---------TTSTTCCCCCEEEEEEEE
T ss_pred cCCc-cCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch---------HHhccCCCCCEEeCCCCc
Confidence 7774 22222 2 4677888888777632 22345777777766554433 235668888888887665
Q ss_pred Cc
Q 041569 264 VE 265 (285)
Q Consensus 264 ~~ 265 (285)
..
T Consensus 184 ~~ 185 (263)
T 1xeu_A 184 CV 185 (263)
T ss_dssp EE
T ss_pred cc
Confidence 44
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.39 E-value=2.2e-07 Score=77.86 Aligned_cols=121 Identities=21% Similarity=0.278 Sum_probs=80.7
Q ss_pred CCCceEEEEeeeCCCccccCCc-cccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569 89 NGLEVLDFMVIADENTYYALPQ-TIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLL 163 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 163 (285)
++++.++++. .. ...++. .+..+++|++|++++|.+.. ....+++|++|+|.++.++.... ..+..+++|
T Consensus 28 ~~l~~L~ls~--n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L 102 (276)
T 2z62_A 28 FSTKNLDLSF--NP--LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSL 102 (276)
T ss_dssp TTCCEEECTT--CC--CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTC
T ss_pred CCccEEECCC--Cc--ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh-hhhcCCccc
Confidence 4688887765 22 222333 45567899999999987654 23468899999999987743221 124678999
Q ss_pred ceeeeecCCC--cCeEEEcc-CCcceEEEeecCCCceEE----E-eCCCccEEEEeeCcE
Q 041569 164 EDLSISHCHS--LGRIMISS-NKLEHLLISSCYGLNALD----V-DAPRLLSFIFDLNPI 215 (285)
Q Consensus 164 e~L~l~~c~~--~~~~~i~~-~~L~~L~l~~~~~~~~~~----~-~~p~L~~l~~~~~~~ 215 (285)
+.|++.++.- +....+.. ++|+.|++.++. +..+. + ..++|++|+++++.+
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred cEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCC
Confidence 9999998752 11212333 789999999885 33221 2 468999999988763
No 76
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.39 E-value=4.2e-07 Score=88.23 Aligned_cols=22 Identities=9% Similarity=0.173 Sum_probs=15.7
Q ss_pred hccCCCceEEEEEeCCCccCCC
Q 041569 248 LGASSQIERLCIDFSSVETNSE 269 (285)
Q Consensus 248 l~~~~~L~~L~L~~~~~~~~~~ 269 (285)
+..+++|+.|+|+.+.....+.
T Consensus 500 ~~~l~~L~~L~Ls~N~l~~l~~ 521 (844)
T 3j0a_A 500 FSHLTALRGLSLNSNRLTVLSH 521 (844)
T ss_dssp SSSCCSCSEEEEESCCCSSCCC
T ss_pred ccchhhhheeECCCCCCCccCh
Confidence 4567888888888877765433
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.39 E-value=7.6e-08 Score=81.59 Aligned_cols=162 Identities=18% Similarity=0.093 Sum_probs=107.4
Q ss_pred CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCcccee
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDL 166 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 166 (285)
++++.|+++. .... ...+..+...++|+.|+|+++.+.. ....+++|++|++.++.++. +...+..+++|+.|
T Consensus 31 ~~l~~L~L~~--N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L 105 (290)
T 1p9a_G 31 KDTTILHLSE--NLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVL 105 (290)
T ss_dssp TTCCEEECTT--SCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEE
T ss_pred CCCCEEEcCC--CcCC-ccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCc--CchhhccCCCCCEE
Confidence 4677777654 2211 1123345567899999999988765 34678999999999987742 22235678999999
Q ss_pred eeecCCCcCeEE---Ecc-CCcceEEEeecCCCceEEE----eCCCccEEEEeeCcEee------ecCCCcccceecccc
Q 041569 167 SISHCHSLGRIM---ISS-NKLEHLLISSCYGLNALDV----DAPRLLSFIFDLNPIPI------ISTNALCPWNVTLDC 232 (285)
Q Consensus 167 ~l~~c~~~~~~~---i~~-~~L~~L~l~~~~~~~~~~~----~~p~L~~l~~~~~~~~~------~~~~~L~~l~i~~~~ 232 (285)
+++++. ++.+. +.. ++|+.|.+.++. +..+.. ..++|+.|++.++.+.. ...++|+.+++..+.
T Consensus 106 ~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 106 DVSFNR-LTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp ECCSSC-CCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCc-CcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc
Confidence 999875 33332 122 789999999884 333321 35889999998887421 223578888887766
Q ss_pred CCCCChhhHHHHHHHhccCCCceEEEEEeCCCc
Q 041569 233 DSNLDCDWFLSLKEFLGASSQIERLCIDFSSVE 265 (285)
Q Consensus 233 ~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~ 265 (285)
+..++.. +...++|+.|+|.-+...
T Consensus 184 l~~ip~~--------~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 184 LYTIPKG--------FFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCCCTT--------TTTTCCCSEEECCSCCBC
T ss_pred CCccChh--------hcccccCCeEEeCCCCcc
Confidence 6655442 223568999888776654
No 78
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.38 E-value=1.1e-07 Score=89.76 Aligned_cols=79 Identities=13% Similarity=0.042 Sum_probs=37.0
Q ss_pred CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC-----CCccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL-----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLL 163 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 163 (285)
..++.+++.. .... ...+..+..+++|+.|++++|.+.. ...++++|++|++.++.++...- ..+..+|+|
T Consensus 381 ~~L~~L~L~~--n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~L 456 (680)
T 1ziw_A 381 SPLHILNLTK--NKIS-KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR-NSFALVPSL 456 (680)
T ss_dssp SCCCEEECTT--SCCC-EECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCT-TTTTTCTTC
T ss_pred CcCceEECCC--CCCC-eEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeCh-hhhhcCccc
Confidence 3566665543 1111 1123333446667777777665432 12345666666666664411100 012345555
Q ss_pred ceeeeecC
Q 041569 164 EDLSISHC 171 (285)
Q Consensus 164 e~L~l~~c 171 (285)
+.|++.+|
T Consensus 457 ~~L~l~~n 464 (680)
T 1ziw_A 457 QRLMLRRV 464 (680)
T ss_dssp CEEECTTS
T ss_pred ccchhccc
Confidence 55555544
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.38 E-value=1e-08 Score=90.43 Aligned_cols=149 Identities=13% Similarity=0.093 Sum_probs=88.5
Q ss_pred cCcCCccEEEEcCeeecC--------CCccccccceEEeeeeecChHH---HHHHHhCC---------CccceeeeecCC
Q 041569 113 FSAKLLTSLKLVGCKLEL--------PSFTCAHLKKLLLSEFPLNDRE---LHHLISKC---------PLLEDLSISHCH 172 (285)
Q Consensus 113 ~~~~~L~~L~L~~~~~~~--------~~~~~~~L~~L~L~~~~~~~~~---l~~l~~~c---------p~Le~L~l~~c~ 172 (285)
..+++|++|+|++|.+.. ....+++|++|+|.++.+++.. +...+..+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 457788888888877654 1124678888888888775433 33333344 788888888775
Q ss_pred CcCeEEE--------ccCCcceEEEeecCCCce-----E---E-EeCCCccEEEEeeCcEe----------eecCCCccc
Q 041569 173 SLGRIMI--------SSNKLEHLLISSCYGLNA-----L---D-VDAPRLLSFIFDLNPIP----------IISTNALCP 225 (285)
Q Consensus 173 ~~~~~~i--------~~~~L~~L~l~~~~~~~~-----~---~-~~~p~L~~l~~~~~~~~----------~~~~~~L~~ 225 (285)
++...+ ..++|++|++.+|. +.. + . ...|+|++|+++++.+. +...++|++
T Consensus 171 -l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~ 248 (386)
T 2ca6_A 171 -LENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 248 (386)
T ss_dssp -CTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred -CCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence 221111 11678888888774 220 1 1 14677888888777642 234467777
Q ss_pred ceeccccCCCCChhhHHHHHHHhcc--CCCceEEEEEeCCCcc
Q 041569 226 WNVTLDCDSNLDCDWFLSLKEFLGA--SSQIERLCIDFSSVET 266 (285)
Q Consensus 226 l~i~~~~~~~~~~~~~~~l~~~l~~--~~~L~~L~L~~~~~~~ 266 (285)
++++...+... ....+...+.. +++|+.|+|+.+.+..
T Consensus 249 L~L~~n~i~~~---~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 249 LGLNDCLLSAR---GAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp EECTTCCCCHH---HHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred EECCCCCCchh---hHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 77765443221 11223344433 7788888887776654
No 80
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.37 E-value=2.7e-07 Score=78.94 Aligned_cols=162 Identities=15% Similarity=0.070 Sum_probs=92.3
Q ss_pred CCCceEEEEeeeCCCccccCCccccCc-----CCccEEEEcCeeecC-C---CccccccceEEeeeeecChH-HH-HHH-
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIFSA-----KLLTSLKLVGCKLEL-P---SFTCAHLKKLLLSEFPLNDR-EL-HHL- 156 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~-----~~L~~L~L~~~~~~~-~---~~~~~~L~~L~L~~~~~~~~-~l-~~l- 156 (285)
++++.++++.. ... ..|..+... ++|++|++++|.+.. . ...+++|++|+|+++.+... .+ ..+
T Consensus 121 ~~L~~L~Ls~N--~l~--~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 121 PDLNILNLRNV--SWA--TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCCSEEEEESC--BCS--SSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred CCccEEEccCC--CCc--chhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 45777777652 211 123333333 677777777776654 1 23567777777777765332 22 221
Q ss_pred HhCCCccceeeeecCCCcCeE-EEc-----c-CCcceEEEeecCCCce-E--E--EeCCCccEEEEeeCcEee---ecCC
Q 041569 157 ISKCPLLEDLSISHCHSLGRI-MIS-----S-NKLEHLLISSCYGLNA-L--D--VDAPRLLSFIFDLNPIPI---ISTN 221 (285)
Q Consensus 157 ~~~cp~Le~L~l~~c~~~~~~-~i~-----~-~~L~~L~l~~~~~~~~-~--~--~~~p~L~~l~~~~~~~~~---~~~~ 221 (285)
...+++|++|++++|. ++.+ .+. . ++|+.|+++++. +.. . . ...++|++|+++++.+.. ...+
T Consensus 197 ~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~ 274 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA 274 (312)
T ss_dssp TTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCCS
T ss_pred hccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCCccChhhhhccC
Confidence 1567777777777764 2211 111 1 577777777775 211 1 1 134778888887776321 1115
Q ss_pred CcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCc
Q 041569 222 ALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVE 265 (285)
Q Consensus 222 ~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~ 265 (285)
+|+.++++...+...+. +..+++|+.|+++.+...
T Consensus 275 ~L~~L~Ls~N~l~~~p~---------~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 275 KLSVLDLSYNRLDRNPS---------PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp EEEEEECCSSCCCSCCC---------TTTSCEEEEEECTTCTTT
T ss_pred CceEEECCCCCCCCChh---------HhhCCCCCEEeccCCCCC
Confidence 67777777655544422 456889999998776654
No 81
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.36 E-value=2.1e-07 Score=86.75 Aligned_cols=20 Identities=10% Similarity=0.202 Sum_probs=12.6
Q ss_pred HhccCCCceEEEEEeCCCcc
Q 041569 247 FLGASSQIERLCIDFSSVET 266 (285)
Q Consensus 247 ~l~~~~~L~~L~L~~~~~~~ 266 (285)
.++.+++|+.|+++.+....
T Consensus 468 ~~~~l~~L~~L~Ls~n~l~~ 487 (606)
T 3vq2_A 468 VFANTTNLTFLDLSKCQLEQ 487 (606)
T ss_dssp CCTTCTTCCEEECTTSCCCE
T ss_pred hhccCCCCCEEECCCCcCCc
Confidence 34556777777776665554
No 82
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.35 E-value=5.4e-08 Score=87.52 Aligned_cols=84 Identities=18% Similarity=0.105 Sum_probs=47.7
Q ss_pred HHCCCceEEEEeeeCCCcc---ccCCccccCcCCccEEEEcCeeecC-----CCcccc----ccceEEeeeeecChH---
Q 041569 87 TENGLEVLDFMVIADENTY---YALPQTIFSAKLLTSLKLVGCKLEL-----PSFTCA----HLKKLLLSEFPLNDR--- 151 (285)
Q Consensus 87 ~~~~l~~L~l~~~~~~~~~---~~l~~~~~~~~~L~~L~L~~~~~~~-----~~~~~~----~L~~L~L~~~~~~~~--- 151 (285)
..++++.++++. +.... ..++..+..+++|++|++++|.+.. ....++ +|++|+|.++.+++.
T Consensus 26 ~~~~L~~L~L~~--~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 26 LLQQCQVVRLDD--CGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHTTCSEEEEES--SCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred hcCCccEEEccC--CCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 345677777765 22221 1344445556777777777766543 111233 577777777766543
Q ss_pred HHHHHHhCCCccceeeeecCC
Q 041569 152 ELHHLISKCPLLEDLSISHCH 172 (285)
Q Consensus 152 ~l~~l~~~cp~Le~L~l~~c~ 172 (285)
.+...+..+++|++|++++|.
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSB
T ss_pred HHHHHHccCCceeEEECCCCc
Confidence 344445667777777777664
No 83
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.35 E-value=5.3e-07 Score=70.20 Aligned_cols=84 Identities=12% Similarity=0.130 Sum_probs=65.7
Q ss_pred CCceEEEEeeeCCCccccCCccccCcCCccEEEEcCee-ecC-----CCc---cccccceEEeeee-ecChHHHHHHHhC
Q 041569 90 GLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCK-LEL-----PSF---TCAHLKKLLLSEF-PLNDRELHHLISK 159 (285)
Q Consensus 90 ~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~-----~~~---~~~~L~~L~L~~~-~~~~~~l~~l~~~ 159 (285)
.+++++++. +......+.. +..|++|++|+|++|. +++ .+. .+++|++|+|++| .+|+.++..+ ..
T Consensus 62 ~L~~LDLs~--~~Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~ 137 (176)
T 3e4g_A 62 KIQAIDATD--SCIMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HH 137 (176)
T ss_dssp CEEEEEEES--CCCCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GG
T ss_pred eEeEEeCcC--CCccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hc
Confidence 588888887 4455544443 4679999999999995 544 111 2568999999999 4899999986 57
Q ss_pred CCccceeeeecCCCcCeE
Q 041569 160 CPLLEDLSISHCHSLGRI 177 (285)
Q Consensus 160 cp~Le~L~l~~c~~~~~~ 177 (285)
||+|+.|++++|+.++..
T Consensus 138 ~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp CTTCCEEEEESCTTCCCH
T ss_pred CCCCCEEECCCCCCCCch
Confidence 999999999999988764
No 84
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.35 E-value=7.5e-07 Score=86.42 Aligned_cols=145 Identities=17% Similarity=0.150 Sum_probs=78.4
Q ss_pred cccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEE---Ecc-C
Q 041569 111 TIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIM---ISS-N 182 (285)
Q Consensus 111 ~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~---i~~-~ 182 (285)
.+..+++|+.|+|++|.+.. ...++++|++|+|+++.++... ...+..+|+|+.|+++++. ++.+. +.. +
T Consensus 285 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~ 362 (844)
T 3j0a_A 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY-SSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLE 362 (844)
T ss_dssp CSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC-SCSCSSCTTCCEEECCSCC-CCCCCSSCSCSCC
T ss_pred hhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC-HHHhcCCCCCCEEECCCCC-CCccChhhhcCCC
Confidence 33446777777777776543 2235677777777777653210 1124456777777777663 22221 111 6
Q ss_pred CcceEEEeecCCCceEEEeCCCccEEEEeeCcEeee--cCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEE
Q 041569 183 KLEHLLISSCYGLNALDVDAPRLLSFIFDLNPIPII--STNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCID 260 (285)
Q Consensus 183 ~L~~L~l~~~~~~~~~~~~~p~L~~l~~~~~~~~~~--~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~ 260 (285)
+|+.|++.++. +..+.. .|+|+.+.+.++.+... ....++.++++.+.+...+. ...+..+++|+.|+|+
T Consensus 363 ~L~~L~Ls~N~-l~~i~~-~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~------~~~~~~l~~L~~L~Ls 434 (844)
T 3j0a_A 363 KLQTLDLRDNA-LTTIHF-IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDI------LYFLLRVPHLQILILN 434 (844)
T ss_dssp CCCEEEEETCC-SCCCSS-CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTT------HHHHTTCTTCCEEEEE
T ss_pred CCCEEECCCCC-CCcccC-CCCcchhccCCCCcccccccccccceeecccCccccCch------hhhhhcCCccceeeCC
Confidence 77777777764 222221 56777777776653211 11245555555444433322 1334567777777776
Q ss_pred eCCCc
Q 041569 261 FSSVE 265 (285)
Q Consensus 261 ~~~~~ 265 (285)
.+...
T Consensus 435 ~N~l~ 439 (844)
T 3j0a_A 435 QNRFS 439 (844)
T ss_dssp SCCCC
T ss_pred CCccc
Confidence 66554
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.35 E-value=1.4e-07 Score=79.19 Aligned_cols=164 Identities=20% Similarity=0.235 Sum_probs=107.5
Q ss_pred CCCceEEEEeeeCCCccccCCc-cccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569 89 NGLEVLDFMVIADENTYYALPQ-TIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLL 163 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 163 (285)
++++.++++. .. ...++. .+..+++|++|++++|.+.. ....+++|++|++.++.++...-. .+..+++|
T Consensus 52 ~~L~~L~l~~--n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L 126 (276)
T 2z62_A 52 PELQVLDLSR--CE--IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF-PIGHLKTL 126 (276)
T ss_dssp TTCSEEECTT--CC--CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTC-CCTTCTTC
T ss_pred cCCcEEECCC--Cc--CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCch-hcccCCCC
Confidence 5788887765 22 123333 44557999999999997755 234689999999999876321110 15678999
Q ss_pred ceeeeecCCCcCeEEE----cc-CCcceEEEeecCCCceEEE----eCCCcc----EEEEeeCcEeee-----cCCCccc
Q 041569 164 EDLSISHCHSLGRIMI----SS-NKLEHLLISSCYGLNALDV----DAPRLL----SFIFDLNPIPII-----STNALCP 225 (285)
Q Consensus 164 e~L~l~~c~~~~~~~i----~~-~~L~~L~l~~~~~~~~~~~----~~p~L~----~l~~~~~~~~~~-----~~~~L~~ 225 (285)
++|+++++. ++.+.+ .. ++|++|+++++. +..+.. ..++|+ +++++++.+... ...+|+.
T Consensus 127 ~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~ 204 (276)
T 2z62_A 127 KELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKE 204 (276)
T ss_dssp CEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEE
T ss_pred CEEECcCCc-cceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccE
Confidence 999999875 333222 22 899999999984 444321 234455 777777763321 1226788
Q ss_pred ceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCcc
Q 041569 226 WNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVET 266 (285)
Q Consensus 226 l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~ 266 (285)
++++...+...+. ..+..+++|+.|+++.+...-
T Consensus 205 L~L~~n~l~~~~~-------~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 205 LALDTNQLKSVPD-------GIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp EECCSSCCSCCCT-------TTTTTCCSCCEEECCSSCBCC
T ss_pred EECCCCceeecCH-------hHhcccccccEEEccCCcccc
Confidence 8887766655543 445778999999998777653
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.34 E-value=1.8e-07 Score=77.43 Aligned_cols=154 Identities=15% Similarity=0.100 Sum_probs=106.3
Q ss_pred CCccEEEEcCeeecC-CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEE---cc-CCcceEEEe
Q 041569 116 KLLTSLKLVGCKLEL-PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMI---SS-NKLEHLLIS 190 (285)
Q Consensus 116 ~~L~~L~L~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i---~~-~~L~~L~l~ 190 (285)
++.+.++++++.+.. +..-.++|++|+|.++.++...- ..+..+++|++|+++++. ++.+.. .. ++|+.|++.
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSD-ATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCH-hHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECC
Confidence 567889999887766 33334789999999997743211 125678999999999985 333322 22 799999999
Q ss_pred ecCCCceEE----EeCCCccEEEEeeCcEe------eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEE
Q 041569 191 SCYGLNALD----VDAPRLLSFIFDLNPIP------IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCID 260 (285)
Q Consensus 191 ~~~~~~~~~----~~~p~L~~l~~~~~~~~------~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~ 260 (285)
++. +..+. -..++|++|+++++.+. +...++|+.++++...+...+. ..++.+++|+.|+|+
T Consensus 92 ~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 92 NNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-------GAFDKLTNLQTLSLS 163 (251)
T ss_dssp TSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------TTTTTCTTCCEEECC
T ss_pred CCc-ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH-------HHcCcCcCCCEEECC
Confidence 985 33332 14689999999998743 1234688888988766665544 345678999999999
Q ss_pred eCCCccCCCchhhhhhhhee
Q 041569 261 FSSVETNSEDATLHFLYKLR 280 (285)
Q Consensus 261 ~~~~~~~~~~~~f~~L~~L~ 280 (285)
.+.....+.. .|..+++|+
T Consensus 164 ~N~l~~~~~~-~~~~l~~L~ 182 (251)
T 3m19_A 164 TNQLQSVPHG-AFDRLGKLQ 182 (251)
T ss_dssp SSCCSCCCTT-TTTTCTTCC
T ss_pred CCcCCccCHH-HHhCCCCCC
Confidence 9888764432 244444443
No 87
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.34 E-value=6e-07 Score=82.07 Aligned_cols=153 Identities=13% Similarity=0.091 Sum_probs=101.6
Q ss_pred CCccEEEEcCeeecC-C-CccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeE-E----Ecc-CCcceE
Q 041569 116 KLLTSLKLVGCKLEL-P-SFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRI-M----ISS-NKLEHL 187 (285)
Q Consensus 116 ~~L~~L~L~~~~~~~-~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~-~----i~~-~~L~~L 187 (285)
.+|+.|++++|.+.. . ...+++|++|+++++.+++.... .+..+++|+.|++++|. ++.+ . +.. ++|+.|
T Consensus 302 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L 379 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFE-NCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQL 379 (520)
T ss_dssp CCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTT-TCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEE
T ss_pred CceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhh-hhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEE
Confidence 346666666665544 2 25788999999999988653222 24678999999999886 3321 1 222 889999
Q ss_pred EEeecCCCce-EE----EeCCCccEEEEeeCcEe----eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEE
Q 041569 188 LISSCYGLNA-LD----VDAPRLLSFIFDLNPIP----IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLC 258 (285)
Q Consensus 188 ~l~~~~~~~~-~~----~~~p~L~~l~~~~~~~~----~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~ 258 (285)
+++++. +.. +. ...++|++|+++++.+. ....++|+.++++...+..++. -+..+++|+.|+
T Consensus 380 ~Ls~N~-l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~--------~~~~l~~L~~L~ 450 (520)
T 2z7x_B 380 DISQNS-VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPK--------QVVKLEALQELN 450 (520)
T ss_dssp ECCSSC-CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCG--------GGGGCTTCCEEE
T ss_pred ECCCCc-CCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccch--------hhhcCCCCCEEE
Confidence 999986 222 21 24689999999988642 1112688999988766665544 123789999999
Q ss_pred EEeCCCccCCCchhhhhhhhee
Q 041569 259 IDFSSVETNSEDATLHFLYKLR 280 (285)
Q Consensus 259 L~~~~~~~~~~~~~f~~L~~L~ 280 (285)
++.+.....+.. .|..+++|+
T Consensus 451 L~~N~l~~l~~~-~~~~l~~L~ 471 (520)
T 2z7x_B 451 VASNQLKSVPDG-IFDRLTSLQ 471 (520)
T ss_dssp CCSSCCCCCCTT-TTTTCTTCC
T ss_pred CCCCcCCccCHH-HhccCCccc
Confidence 998888765443 355555554
No 88
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.33 E-value=5.9e-08 Score=84.84 Aligned_cols=168 Identities=17% Similarity=0.197 Sum_probs=102.2
Q ss_pred CCceEEEEeeeCCCcc---ccCCccccCc-CCccEEEEcCeeecC-C-------Cccc-cccceEEeeeeecChH---HH
Q 041569 90 GLEVLDFMVIADENTY---YALPQTIFSA-KLLTSLKLVGCKLEL-P-------SFTC-AHLKKLLLSEFPLNDR---EL 153 (285)
Q Consensus 90 ~l~~L~l~~~~~~~~~---~~l~~~~~~~-~~L~~L~L~~~~~~~-~-------~~~~-~~L~~L~L~~~~~~~~---~l 153 (285)
++++++++.. .... ..+...+... ++|++|+|++|.+.. . ...+ ++|++|+|+++.+++. .+
T Consensus 52 ~L~~L~Ls~N--~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 129 (362)
T 3goz_A 52 SVTSLNLSGN--SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEF 129 (362)
T ss_dssp TCCEEECCSS--CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred ceeEEECcCC--CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHH
Confidence 6888877662 2111 1111122222 788888888887764 1 1123 7888888888877443 34
Q ss_pred HHHHhC-CCccceeeeecCCCcCeEEE-------cc--CCcceEEEeecCCCceEE-------E-eC-CCccEEEEeeCc
Q 041569 154 HHLISK-CPLLEDLSISHCHSLGRIMI-------SS--NKLEHLLISSCYGLNALD-------V-DA-PRLLSFIFDLNP 214 (285)
Q Consensus 154 ~~l~~~-cp~Le~L~l~~c~~~~~~~i-------~~--~~L~~L~l~~~~~~~~~~-------~-~~-p~L~~l~~~~~~ 214 (285)
...+.. +.+|++|++++|. ++...+ .. ++|++|++++|. +.... + .. ++|++|+++++.
T Consensus 130 ~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 207 (362)
T 3goz_A 130 KQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANL 207 (362)
T ss_dssp HHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence 444444 5688888888874 221111 11 388899888885 22111 1 23 488999888876
Q ss_pred Eee----------ec-CCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCC
Q 041569 215 IPI----------IS-TNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSV 264 (285)
Q Consensus 215 ~~~----------~~-~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~ 264 (285)
+.. .. .++|++++++...+...+. ..+...+..+++|+.|+|+.+..
T Consensus 208 i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~---~~l~~~~~~l~~L~~L~L~~n~l 265 (362)
T 3goz_A 208 LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL---ENLKLLKDSLKHLQTVYLDYDIV 265 (362)
T ss_dssp GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH---HHHHHTTTTTTTCSEEEEEHHHH
T ss_pred CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH---HHHHHHHhcCCCccEEEeccCCc
Confidence 321 11 3478888887766655443 23346677888899999887763
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.33 E-value=1.2e-07 Score=80.95 Aligned_cols=164 Identities=15% Similarity=0.078 Sum_probs=98.1
Q ss_pred CCCceEEEEeeeCCCccc--cCC-ccccCcCCccEEEEcCeeecC-C---CccccccceEEeeeeecCh-HHHH--HHHh
Q 041569 89 NGLEVLDFMVIADENTYY--ALP-QTIFSAKLLTSLKLVGCKLEL-P---SFTCAHLKKLLLSEFPLND-RELH--HLIS 158 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~--~l~-~~~~~~~~L~~L~L~~~~~~~-~---~~~~~~L~~L~L~~~~~~~-~~l~--~l~~ 158 (285)
+++++++++.. ..... .++ ..+..+++|++|+|++|.+.. . ...+++|++|+|+++.+.. ..+. ....
T Consensus 117 ~~L~~L~Ls~n--~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 194 (310)
T 4glp_A 117 LALSSLRLRNV--SWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH 194 (310)
T ss_dssp BCCSSCEEESC--CCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT
T ss_pred CCCCEEEeecc--cccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh
Confidence 45777777663 21110 011 122346788888888887654 1 2357888888888887633 2222 1124
Q ss_pred CCCccceeeeecCCCcCeEE-----E-cc-CCcceEEEeecCCCceE-E--E-e---CCCccEEEEeeCcEe---eecCC
Q 041569 159 KCPLLEDLSISHCHSLGRIM-----I-SS-NKLEHLLISSCYGLNAL-D--V-D---APRLLSFIFDLNPIP---IISTN 221 (285)
Q Consensus 159 ~cp~Le~L~l~~c~~~~~~~-----i-~~-~~L~~L~l~~~~~~~~~-~--~-~---~p~L~~l~~~~~~~~---~~~~~ 221 (285)
.+|+|++|++++|. ++.+. + .. ++|++|+++++. +..+ . + . .|+|++|+++++.+. ....+
T Consensus 195 ~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~ 272 (310)
T 4glp_A 195 KFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPA 272 (310)
T ss_dssp SSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCS
T ss_pred cCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcC
Confidence 67888888888774 33211 1 11 678888888875 2221 1 1 1 268888888887632 22235
Q ss_pred CcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCc
Q 041569 222 ALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVE 265 (285)
Q Consensus 222 ~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~ 265 (285)
+|+.++++.+.+...+. +..+++|+.|+|+.+...
T Consensus 273 ~L~~L~Ls~N~l~~~~~---------~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 273 KLRVLDLSSNRLNRAPQ---------PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCSCEECCSCCCCSCCC---------TTSCCCCSCEECSSTTTS
T ss_pred CCCEEECCCCcCCCCch---------hhhCCCccEEECcCCCCC
Confidence 78888887766554322 356799999999877654
No 90
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.32 E-value=6.5e-07 Score=81.44 Aligned_cols=154 Identities=16% Similarity=0.177 Sum_probs=110.6
Q ss_pred cCCccEEEEcCeeecC-C---CccccccceEEeeeeecCh-HHHHHHHhCCCccceeeeecCCCcCeEEEccCCcceEEE
Q 041569 115 AKLLTSLKLVGCKLEL-P---SFTCAHLKKLLLSEFPLND-RELHHLISKCPLLEDLSISHCHSLGRIMISSNKLEHLLI 189 (285)
Q Consensus 115 ~~~L~~L~L~~~~~~~-~---~~~~~~L~~L~L~~~~~~~-~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~~~L~~L~l 189 (285)
+++|+.|+|++|.+.. . ...+++|++|+|+++.++. .. +..+++|+.|++++|. ++.+.. .++|+.|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~-l~~l~~-~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNY-VQELLV-GPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE----CTTCTTCCEEECCSSE-EEEEEE-CTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc----cccCCCCCEEEecCCc-CCCCCC-CCCcCEEEC
Confidence 4599999999998765 2 2468999999999997742 22 6789999999999984 444332 289999999
Q ss_pred eecCCCceEEE-eCCCccEEEEeeCcEe------eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeC
Q 041569 190 SSCYGLNALDV-DAPRLLSFIFDLNPIP------IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFS 262 (285)
Q Consensus 190 ~~~~~~~~~~~-~~p~L~~l~~~~~~~~------~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~ 262 (285)
++|. +..+.. ..|+|++|+++++.+. +...++|+.++++.+.+...... .+...+++|+.|+|+.+
T Consensus 107 ~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 107 ANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA------ELAASSDTLEHLNLQYN 179 (487)
T ss_dssp CSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG------GGGGGTTTCCEEECTTS
T ss_pred cCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH------HHhhhCCcccEEecCCC
Confidence 9995 454444 5799999999998732 23346888888887655543321 34457899999999988
Q ss_pred CCccCCCchhhhhhhheee
Q 041569 263 SVETNSEDATLHFLYKLRL 281 (285)
Q Consensus 263 ~~~~~~~~~~f~~L~~L~l 281 (285)
.....+....+.+|..|.+
T Consensus 180 ~l~~~~~~~~l~~L~~L~L 198 (487)
T 3oja_A 180 FIYDVKGQVVFAKLKTLDL 198 (487)
T ss_dssp CCCEEECCCCCTTCCEEEC
T ss_pred ccccccccccCCCCCEEEC
Confidence 8876433333445555443
No 91
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.32 E-value=3.5e-07 Score=85.99 Aligned_cols=152 Identities=13% Similarity=0.124 Sum_probs=82.9
Q ss_pred CccEEEEcCeeecC-CCc----------cccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEcc----
Q 041569 117 LLTSLKLVGCKLEL-PSF----------TCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISS---- 181 (285)
Q Consensus 117 ~L~~L~L~~~~~~~-~~~----------~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~---- 181 (285)
+|+.|++++|.+.. .+. .+++|++|+|.++.++. .-..+...+++|+.|++++|. ++.+....
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~ 480 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDE 480 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEET
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCC-CCCcCHHHhccc
Confidence 56666666665533 111 34477777777776641 112234457778888887764 22221111
Q ss_pred -------CCcceEEEeecCCCceEEE-----eCCCccEEEEeeCcEe-----eecCCCcccceecc------ccC-CCCC
Q 041569 182 -------NKLEHLLISSCYGLNALDV-----DAPRLLSFIFDLNPIP-----IISTNALCPWNVTL------DCD-SNLD 237 (285)
Q Consensus 182 -------~~L~~L~l~~~~~~~~~~~-----~~p~L~~l~~~~~~~~-----~~~~~~L~~l~i~~------~~~-~~~~ 237 (285)
++|+.|++.++. +..+.. ..|+|+.|+++++.+. +...++|+.++++. ..+ +..+
T Consensus 481 ~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 481 NENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp TEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred cccccccCCccEEECcCCc-CCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence 178888887774 333321 4577888888777632 22335677777632 111 1111
Q ss_pred hhhHHHHHHHhccCCCceEEEEEeCCCccCCCchhhhhhhhee
Q 041569 238 CDWFLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKLR 280 (285)
Q Consensus 238 ~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~f~~L~~L~ 280 (285)
..+..+++|+.|+|+.+.....+.. ++.+|+.|.
T Consensus 560 --------~~l~~l~~L~~L~Ls~N~l~~ip~~-~~~~L~~L~ 593 (636)
T 4eco_A 560 --------EGITLCPSLTQLQIGSNDIRKVNEK-ITPNISVLD 593 (636)
T ss_dssp --------TTGGGCSSCCEEECCSSCCCBCCSC-CCTTCCEEE
T ss_pred --------HHHhcCCCCCEEECCCCcCCccCHh-HhCcCCEEE
Confidence 2345678888888877777554433 234454443
No 92
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.31 E-value=1.4e-07 Score=89.20 Aligned_cols=39 Identities=13% Similarity=-0.028 Sum_probs=22.6
Q ss_pred cccccceEEeeeeecChHHHHHHHhCCCccceeeeecCC
Q 041569 134 TCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCH 172 (285)
Q Consensus 134 ~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~ 172 (285)
.+++|+.|++.++.++...-...+..+++|+.|++++|.
T Consensus 403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence 456777777776655321111224567777777777664
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.31 E-value=6.3e-07 Score=73.42 Aligned_cols=142 Identities=11% Similarity=0.055 Sum_probs=96.7
Q ss_pred CCccEEEEcCeeecC----CCccccccceEEeeeee-cChHHHHHHHhCCCccceeeeecCCCcCeEEEc---c-CCcce
Q 041569 116 KLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFP-LNDRELHHLISKCPLLEDLSISHCHSLGRIMIS---S-NKLEH 186 (285)
Q Consensus 116 ~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~---~-~~L~~ 186 (285)
++|+.|+++++.+.. ....+++|++|++.++. ++.-. ...+..+++|++|++++|..++.+... . ++|+.
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 489999999998765 23468999999999996 53211 112467999999999996667655422 2 79999
Q ss_pred EEEeecCCCceEE-E-eCCCcc---EEEEeeC-cEee------ecCCCcc-cceeccccCCCCChhhHHHHHHHhccCCC
Q 041569 187 LLISSCYGLNALD-V-DAPRLL---SFIFDLN-PIPI------ISTNALC-PWNVTLDCDSNLDCDWFLSLKEFLGASSQ 253 (285)
Q Consensus 187 L~l~~~~~~~~~~-~-~~p~L~---~l~~~~~-~~~~------~~~~~L~-~l~i~~~~~~~~~~~~~~~l~~~l~~~~~ 253 (285)
|++.++. +..+. + ..++|+ +|++.++ .+.. ...++|+ .++++...+...+. ..+.. ++
T Consensus 110 L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~-------~~~~~-~~ 180 (239)
T 2xwt_C 110 LGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG-------YAFNG-TK 180 (239)
T ss_dssp EEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT-------TTTTT-CE
T ss_pred EeCCCCC-CccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH-------hhcCC-CC
Confidence 9999995 22222 2 456777 9999988 5321 2234677 78777655554443 22333 78
Q ss_pred ceEEEEEeCC-CccC
Q 041569 254 IERLCIDFSS-VETN 267 (285)
Q Consensus 254 L~~L~L~~~~-~~~~ 267 (285)
|+.|+++.+. ....
T Consensus 181 L~~L~L~~n~~l~~i 195 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVI 195 (239)
T ss_dssp EEEEECTTCTTCCEE
T ss_pred CCEEEcCCCCCcccC
Confidence 9999998773 6543
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.29 E-value=8.7e-07 Score=82.03 Aligned_cols=113 Identities=19% Similarity=0.109 Sum_probs=52.6
Q ss_pred CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecCCCccccccceEEeeeeecChHHHHHHHhCCCccceeee
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLELPSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSI 168 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l 168 (285)
.+++.+++... .. ..+|..++ ++|+.|+|++|.+...+..+++|++|+|+++.++. +.. + +.+|+.|++
T Consensus 59 ~~L~~L~Ls~n--~L--~~lp~~l~--~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~--ip~-l--~~~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRL--NL--SSLPDNLP--PQITVLEITQNALISLPELPASLEYLDACDNRLST--LPE-L--PASLKHLDV 127 (571)
T ss_dssp TTCSEEECCSS--CC--SCCCSCCC--TTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSC--CCC-C--CTTCCEEEC
T ss_pred CCccEEEeCCC--CC--CccCHhHc--CCCCEEECcCCCCcccccccCCCCEEEccCCCCCC--cch-h--hcCCCEEEC
Confidence 46677666542 21 22444332 56666776666655422345666666666665532 111 1 125566666
Q ss_pred ecCCCcCeEEEccCCcceEEEeecCCCceEEEeCCCccEEEEeeCc
Q 041569 169 SHCHSLGRIMISSNKLEHLLISSCYGLNALDVDAPRLLSFIFDLNP 214 (285)
Q Consensus 169 ~~c~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~p~L~~l~~~~~~ 214 (285)
+++. ++.+.-..++|+.|+++++. +..+....++|+.|+++++.
T Consensus 128 s~N~-l~~lp~~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 128 DNNQ-LTMLPELPALLEYINADNNQ-LTMLPELPTSLEVLSVRNNQ 171 (571)
T ss_dssp CSSC-CSCCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC
T ss_pred CCCc-CCCCCCcCccccEEeCCCCc-cCcCCCcCCCcCEEECCCCC
Confidence 5553 21111112455555555553 22222233455555555443
No 95
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.28 E-value=9.1e-08 Score=86.05 Aligned_cols=170 Identities=18% Similarity=0.177 Sum_probs=109.1
Q ss_pred CCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC--------CCccccccceEEeeeeecChHHHHHHHhCCC
Q 041569 90 GLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL--------PSFTCAHLKKLLLSEFPLNDRELHHLISKCP 161 (285)
Q Consensus 90 ~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--------~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp 161 (285)
.+++++++. ...........+..+++|++|++++|.+.. ....+++|++|+|+++.+++.....+...++
T Consensus 4 ~l~~L~Ls~--~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 4 DIQSLDIQC--EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEES--CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred cceehhhhh--cccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 456666654 333333333334557899999999998763 1234689999999999988888877777777
Q ss_pred ----ccceeeeecCCCcCeE-------EEcc-CCcceEEEeecCCCce-----EE----EeCCCccEEEEeeCcEee---
Q 041569 162 ----LLEDLSISHCHSLGRI-------MISS-NKLEHLLISSCYGLNA-----LD----VDAPRLLSFIFDLNPIPI--- 217 (285)
Q Consensus 162 ----~Le~L~l~~c~~~~~~-------~i~~-~~L~~L~l~~~~~~~~-----~~----~~~p~L~~l~~~~~~~~~--- 217 (285)
+|++|++++|. ++.. .+.. ++|++|+++++. +.. +. -..++|++|++.++.+..
T Consensus 82 ~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp STTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred hCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 79999999985 3321 1122 789999999885 221 11 113579999998886331
Q ss_pred -------ecCCCcccceeccccCCCCChhhHHHHHHHh-ccCCCceEEEEEeCCCcc
Q 041569 218 -------ISTNALCPWNVTLDCDSNLDCDWFLSLKEFL-GASSQIERLCIDFSSVET 266 (285)
Q Consensus 218 -------~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l-~~~~~L~~L~L~~~~~~~ 266 (285)
...++|++++++...+. ......+...+ ...++|+.|+++.+....
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~---~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDIN---EAGVRVLCQGLKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCH---HHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred HHHHHHHhhCCCCCEEECcCCCcc---hHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence 22468888888764332 11122222322 346799999998776654
No 96
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.27 E-value=8.6e-08 Score=72.67 Aligned_cols=101 Identities=22% Similarity=0.216 Sum_probs=67.8
Q ss_pred CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCcccee
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDL 166 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 166 (285)
++++.+.+.. +......+|..+..+++|+.|++++|.+.. ....+++|++|+++++.++.. +......+++|++|
T Consensus 17 ~~l~~L~l~~--n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDN--SRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTT--CBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEE
T ss_pred ccCeEEEccC--CcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEE
Confidence 4577777665 332223566666678899999999987765 334688899999999888543 44456668999999
Q ss_pred eeecCCCcCeEE----Ecc-CCcceEEEeecC
Q 041569 167 SISHCHSLGRIM----ISS-NKLEHLLISSCY 193 (285)
Q Consensus 167 ~l~~c~~~~~~~----i~~-~~L~~L~l~~~~ 193 (285)
++++|. ++.+. +.. ++|++|++.++.
T Consensus 94 ~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 94 NLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp ECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred ECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc
Confidence 998885 33321 111 567777776664
No 97
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.25 E-value=1.7e-07 Score=80.85 Aligned_cols=174 Identities=17% Similarity=0.146 Sum_probs=97.9
Q ss_pred CCCceEEEEeeeCCCccccC-CccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569 89 NGLEVLDFMVIADENTYYAL-PQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLL 163 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 163 (285)
++++.+++.. .. ...+ +..+..+++|++|++++|.+.. ....+++|++|++.++.++.-. ...+++|
T Consensus 54 ~~l~~L~l~~--n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~----~~~~~~L 125 (332)
T 2ft3_A 54 PDTTLLDLQN--ND--ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP----PNLPSSL 125 (332)
T ss_dssp TTCCEEECCS--SC--CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCC----SSCCTTC
T ss_pred CCCeEEECCC--Cc--CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccC----ccccccC
Confidence 4677777665 22 1223 3345567889999999887654 2345788999999888764211 1123789
Q ss_pred ceeeeecCCCcCeEE---Ecc-CCcceEEEeecCC----CceEEEe---------------------CCCccEEEEeeCc
Q 041569 164 EDLSISHCHSLGRIM---ISS-NKLEHLLISSCYG----LNALDVD---------------------APRLLSFIFDLNP 214 (285)
Q Consensus 164 e~L~l~~c~~~~~~~---i~~-~~L~~L~l~~~~~----~~~~~~~---------------------~p~L~~l~~~~~~ 214 (285)
++|+++++. ++.+. +.. ++|+.|++.++.- ...-.+. .++|++|++.++.
T Consensus 126 ~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~ 204 (332)
T 2ft3_A 126 VELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNK 204 (332)
T ss_dssp CEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSC
T ss_pred CEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCc
Confidence 999998874 22222 111 6777777777641 0000011 1345555555544
Q ss_pred Ee------eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCccCCCchhhhhhhhee
Q 041569 215 IP------IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKLR 280 (285)
Q Consensus 215 ~~------~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~f~~L~~L~ 280 (285)
+. +...++|+.++++...+..... ..+..+++|+.|+++.+.....+.. +..+++|+
T Consensus 205 i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~L~~N~l~~lp~~--l~~l~~L~ 267 (332)
T 2ft3_A 205 IQAIELEDLLRYSKLYRLGLGHNQIRMIEN-------GSLSFLPTLRELHLDNNKLSRVPAG--LPDLKLLQ 267 (332)
T ss_dssp CCCCCTTSSTTCTTCSCCBCCSSCCCCCCT-------TGGGGCTTCCEEECCSSCCCBCCTT--GGGCTTCC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCcCCh-------hHhhCCCCCCEEECCCCcCeecChh--hhcCccCC
Confidence 21 1222355666665544443332 2356788999999988877754432 44444444
No 98
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.24 E-value=1.6e-06 Score=80.08 Aligned_cols=165 Identities=14% Similarity=0.043 Sum_probs=106.6
Q ss_pred CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecCh-HHHHHHHhCCCcc
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLND-RELHHLISKCPLL 163 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~cp~L 163 (285)
.+++.+++... ......+ ...+++|+.|++++|.+.. ....+++|++|++.++.++. ..+...+..+++|
T Consensus 331 ~~L~~L~l~~n--~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L 405 (562)
T 3a79_B 331 MNIKMLSISDT--PFIHMVC---PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL 405 (562)
T ss_dssp CCCSEEEEESS--CCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTC
T ss_pred CcceEEEccCC--CcccccC---ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCC
Confidence 46777777662 2211111 1357889999999987765 22468899999999988854 3444556788999
Q ss_pred ceeeeecCCCcCeEE---Ecc-CCcceEEEeecCCCceEEEeC-CCccEEEEeeCcEee-----ecCCCcccceeccccC
Q 041569 164 EDLSISHCHSLGRIM---ISS-NKLEHLLISSCYGLNALDVDA-PRLLSFIFDLNPIPI-----ISTNALCPWNVTLDCD 233 (285)
Q Consensus 164 e~L~l~~c~~~~~~~---i~~-~~L~~L~l~~~~~~~~~~~~~-p~L~~l~~~~~~~~~-----~~~~~L~~l~i~~~~~ 233 (285)
+.|+++++.-...+. ... ++|+.|+++++.--..+.... ++|++|+++++.+.. ...++|+.++++...+
T Consensus 406 ~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l 485 (562)
T 3a79_B 406 ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQL 485 (562)
T ss_dssp CEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCC
T ss_pred CEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCC
Confidence 999999886322121 122 789999998885111111112 689999988886432 1335778888877666
Q ss_pred CCCChhhHHHHHHHhccCCCceEEEEEeCCCc
Q 041569 234 SNLDCDWFLSLKEFLGASSQIERLCIDFSSVE 265 (285)
Q Consensus 234 ~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~ 265 (285)
...+.. .+..+++|+.|+++.+...
T Consensus 486 ~~l~~~-------~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 486 KSVPDG-------VFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CCCCTT-------STTTCTTCCCEECCSCCBC
T ss_pred CCCCHH-------HHhcCCCCCEEEecCCCcC
Confidence 555442 3567788888888777654
No 99
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.24 E-value=2.4e-07 Score=71.72 Aligned_cols=127 Identities=20% Similarity=0.128 Sum_probs=79.1
Q ss_pred cCCccEEEEcCeeec--C---CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEE-E-c-cCCcce
Q 041569 115 AKLLTSLKLVGCKLE--L---PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIM-I-S-SNKLEH 186 (285)
Q Consensus 115 ~~~L~~L~L~~~~~~--~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~-i-~-~~~L~~ 186 (285)
.++|+.|++++|.+. . ....+++|++|++.++.++.. ..+..+++|+.|++++|.-...+. . . .++|+.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 378999999999876 3 224689999999999987543 446678899999999886322111 1 1 266777
Q ss_pred EEEeecCCCceEE----E-eCCCccEEEEeeCcEeeecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEe
Q 041569 187 LLISSCYGLNALD----V-DAPRLLSFIFDLNPIPIISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDF 261 (285)
Q Consensus 187 L~l~~~~~~~~~~----~-~~p~L~~l~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~ 261 (285)
|++.+|. +..+. + ..|+|+.|++.++ .+...+... ...+..+++|+.|++..
T Consensus 100 L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N------------------~l~~~~~~~----~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 100 LNLSGNK-LKDISTLEPLKKLECLKSLDLFNC------------------EVTNLNDYR----ESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp EECBSSS-CCSSGGGGGGSSCSCCCEEECCSS------------------GGGTSTTHH----HHHHTTCSSCCEETTEE
T ss_pred EeccCCc-cCcchhHHHHhcCCCCCEEEeeCC------------------cCcchHHHH----HHHHHhCccCcEecCCC
Confidence 7777764 22110 1 2344444444443 222222211 24677889999999888
Q ss_pred CCCccC
Q 041569 262 SSVETN 267 (285)
Q Consensus 262 ~~~~~~ 267 (285)
......
T Consensus 157 n~~~~~ 162 (168)
T 2ell_A 157 REDQEA 162 (168)
T ss_dssp TTSCBC
T ss_pred CChhhc
Confidence 776653
No 100
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.23 E-value=1.9e-06 Score=81.03 Aligned_cols=122 Identities=13% Similarity=0.040 Sum_probs=77.1
Q ss_pred CCCceEEEEeeeCCCccc----------------cCCcccc--CcCCccEEEEcCeeecC----CCccccccceEEeeee
Q 041569 89 NGLEVLDFMVIADENTYY----------------ALPQTIF--SAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEF 146 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~----------------~l~~~~~--~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~ 146 (285)
++++.|+++.. ..... .+|..+. .+++|++|+|++|.+.. ....+++|++|++.++
T Consensus 206 ~~L~~L~Ls~n--~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 206 TKLRQFYMGNS--PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp TTCCEEEEESC--CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred cCCCEEECcCC--ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 57888888763 22210 1888888 89999999999997654 2346899999999999
Q ss_pred e-cCh----HHHHHH--HhCCCccceeeeecCCCcCeEE----Ecc-CCcceEEEeecCCCc-eEE-E-eCCCccEEEEe
Q 041569 147 P-LND----RELHHL--ISKCPLLEDLSISHCHSLGRIM----ISS-NKLEHLLISSCYGLN-ALD-V-DAPRLLSFIFD 211 (285)
Q Consensus 147 ~-~~~----~~l~~l--~~~cp~Le~L~l~~c~~~~~~~----i~~-~~L~~L~l~~~~~~~-~~~-~-~~p~L~~l~~~ 211 (285)
. ++. ..+..+ ...+++|++|++++|. ++.+. +.. ++|+.|++.++. +. .+. + ..++|++|++.
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip~~~~l~~L~~L~L~ 361 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQ-LEGKLPAFGSEIKLASLNLA 361 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCC-CEEECCCCEEEEEESEEECC
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCc-CccchhhhCCCCCCCEEECC
Confidence 7 765 223322 1335788888888775 22222 112 677777777764 22 221 1 34566666666
Q ss_pred eCc
Q 041569 212 LNP 214 (285)
Q Consensus 212 ~~~ 214 (285)
++.
T Consensus 362 ~N~ 364 (636)
T 4eco_A 362 YNQ 364 (636)
T ss_dssp SSE
T ss_pred CCc
Confidence 554
No 101
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.23 E-value=1.3e-07 Score=82.72 Aligned_cols=174 Identities=18% Similarity=0.111 Sum_probs=106.0
Q ss_pred CCCceEEEEeeeCCCcc---ccCCccccCc-CCccEEEEcCeeecC-CC-------cc-ccccceEEeeeeecChH---H
Q 041569 89 NGLEVLDFMVIADENTY---YALPQTIFSA-KLLTSLKLVGCKLEL-PS-------FT-CAHLKKLLLSEFPLNDR---E 152 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~---~~l~~~~~~~-~~L~~L~L~~~~~~~-~~-------~~-~~~L~~L~L~~~~~~~~---~ 152 (285)
+++++++++.. .... ..+...+..+ ++|++|+|++|.+.. .. .. .++|++|+|+++.+++. .
T Consensus 80 ~~L~~L~Ls~n--~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 80 ANVTSLNLSGN--FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp TTCCEEECCSS--CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred CCccEEECcCC--cCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 57888887762 2111 1111123334 789999999988765 11 11 25899999999888543 4
Q ss_pred HHHHHhCCC-ccceeeeecCCCcCeEEE-------cc--CCcceEEEeecCCCce-----EE--E-e-CCCccEEEEeeC
Q 041569 153 LHHLISKCP-LLEDLSISHCHSLGRIMI-------SS--NKLEHLLISSCYGLNA-----LD--V-D-APRLLSFIFDLN 213 (285)
Q Consensus 153 l~~l~~~cp-~Le~L~l~~c~~~~~~~i-------~~--~~L~~L~l~~~~~~~~-----~~--~-~-~p~L~~l~~~~~ 213 (285)
+...+..++ +|++|++++|. ++.... .. ++|++|++++|. +.. +. + . .++|++|+++++
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred HHHHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCC
Confidence 444455566 89999999885 322211 11 489999998885 222 11 1 1 358999999888
Q ss_pred cEee----------ecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCcc
Q 041569 214 PIPI----------ISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVET 266 (285)
Q Consensus 214 ~~~~----------~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~ 266 (285)
.+.. ...+.|+.++++...+..........+...+..+++|+.|+++.+....
T Consensus 236 ~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 236 CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 7432 2335788888876554444444444444555666777777776666543
No 102
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.22 E-value=9.4e-07 Score=85.69 Aligned_cols=134 Identities=14% Similarity=0.085 Sum_probs=72.5
Q ss_pred cccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEcc-----------CCcceEEEeecCCCceEEE----
Q 041569 136 AHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISS-----------NKLEHLLISSCYGLNALDV---- 200 (285)
Q Consensus 136 ~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~-----------~~L~~L~l~~~~~~~~~~~---- 200 (285)
++|+.|+|.++.++. .-..+...+++|+.|++++|. ++.+.... ++|+.|++++|. +..+..
T Consensus 673 ~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~ 749 (876)
T 4ecn_A 673 INASTVTLSYNEIQK-FPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRA 749 (876)
T ss_dssp CCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGST
T ss_pred CCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCCC-CccchHHhhh
Confidence 467777777766541 112234467778888887763 33221111 178888888774 333331
Q ss_pred -eCCCccEEEEeeCcEe-----eecCCCcccceecc------ccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCccCC
Q 041569 201 -DAPRLLSFIFDLNPIP-----IISTNALCPWNVTL------DCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETNS 268 (285)
Q Consensus 201 -~~p~L~~l~~~~~~~~-----~~~~~~L~~l~i~~------~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~ 268 (285)
..|+|+.|+++++.+. +...++|+.++++. ..+.... ...+..+++|+.|+|+.+.....+
T Consensus 750 ~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~i-------p~~l~~L~~L~~L~Ls~N~L~~Ip 822 (876)
T 4ecn_A 750 TTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQW-------PTGITTCPSLIQLQIGSNDIRKVD 822 (876)
T ss_dssp TTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCC-------CTTGGGCSSCCEEECCSSCCCBCC
T ss_pred ccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccC-------hHHHhcCCCCCEEECCCCCCCccC
Confidence 3577888888777532 22345677776643 1111111 123456778888888777775544
Q ss_pred Cchhhhhhhhee
Q 041569 269 EDATLHFLYKLR 280 (285)
Q Consensus 269 ~~~~f~~L~~L~ 280 (285)
.. ++.+|+.|.
T Consensus 823 ~~-l~~~L~~Ld 833 (876)
T 4ecn_A 823 EK-LTPQLYILD 833 (876)
T ss_dssp SC-CCSSSCEEE
T ss_pred Hh-hcCCCCEEE
Confidence 33 233444443
No 103
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.20 E-value=2.2e-07 Score=90.11 Aligned_cols=78 Identities=18% Similarity=0.144 Sum_probs=54.4
Q ss_pred CCCceEEEEeeeCCCccccCCc--cccCcCCccEEEEcCeeecC-C-CccccccceEEeeeeecChHHHHHHHhCCCc-c
Q 041569 89 NGLEVLDFMVIADENTYYALPQ--TIFSAKLLTSLKLVGCKLEL-P-SFTCAHLKKLLLSEFPLNDRELHHLISKCPL-L 163 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~~-~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~-L 163 (285)
++++.|.+.. .... .+|. .+..+++|+.|+|++|.+.. + ...+++|+.|+|.++.++ .+..-+..+++ |
T Consensus 548 ~~L~~L~Ls~--N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L 621 (876)
T 4ecn_A 548 PKIQIFYMGY--NNLE--EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQV 621 (876)
T ss_dssp TTCCEEECCS--SCCC--BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS--CCCTTSCEECTTC
T ss_pred CCccEEEeeC--CcCC--ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc--cchHHHhhccccC
Confidence 4788888776 3333 6777 67778889999999887655 2 235788888888888764 22222556777 8
Q ss_pred ceeeeecCC
Q 041569 164 EDLSISHCH 172 (285)
Q Consensus 164 e~L~l~~c~ 172 (285)
+.|++++|.
T Consensus 622 ~~L~Ls~N~ 630 (876)
T 4ecn_A 622 EGLGFSHNK 630 (876)
T ss_dssp CEEECCSSC
T ss_pred CEEECcCCC
Confidence 888888774
No 104
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.20 E-value=1e-06 Score=79.39 Aligned_cols=98 Identities=17% Similarity=0.127 Sum_probs=47.6
Q ss_pred ccCcCCccEEEEcCeeecCCCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEccCCcceEEEee
Q 041569 112 IFSAKLLTSLKLVGCKLELPSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISSNKLEHLLISS 191 (285)
Q Consensus 112 ~~~~~~L~~L~L~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~~~L~~L~l~~ 191 (285)
+..+++|+.|++++|.+...+...++|++|++.++.++. +.. +..+++|+.|+++++. ++.+.-..++|+.|++.+
T Consensus 191 ~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~ 266 (454)
T 1jl5_A 191 LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEE--LPE-LQNLPFLTTIYADNNL-LKTLPDLPPSLEALNVRD 266 (454)
T ss_dssp CTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSC-CSSCCSCCTTCCEEECCS
T ss_pred ccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCc--ccc-cCCCCCCCEEECCCCc-CCcccccccccCEEECCC
Confidence 444566666666666554322223466666666665531 111 4456777777777653 221111114555555555
Q ss_pred cCCCceEEEeCCCccEEEEeeCc
Q 041569 192 CYGLNALDVDAPRLLSFIFDLNP 214 (285)
Q Consensus 192 ~~~~~~~~~~~p~L~~l~~~~~~ 214 (285)
+. +..+....++|++|+++++.
T Consensus 267 N~-l~~l~~~~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 267 NY-LTDLPELPQSLTFLDVSENI 288 (454)
T ss_dssp SC-CSCCCCCCTTCCEEECCSSC
T ss_pred Cc-ccccCcccCcCCEEECcCCc
Confidence 53 22222223445555554443
No 105
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.19 E-value=2.3e-07 Score=77.34 Aligned_cols=35 Identities=20% Similarity=0.466 Sum_probs=33.1
Q ss_pred cCCCCCHHHHHHHhcCCChhhHHhhhhcccchhhc
Q 041569 7 QISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQF 41 (285)
Q Consensus 7 ~~~~LP~~il~~I~s~L~~~~~~~~~~vskrWr~l 41 (285)
.|+.||+||+.+||+||+++|+++++.|||+||.+
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l 38 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET 38 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 47789999999999999999999999999999986
No 106
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.14 E-value=1e-06 Score=74.08 Aligned_cols=36 Identities=17% Similarity=0.557 Sum_probs=34.2
Q ss_pred CcCCCCCHHHHHHHhcCCChhhHH-hhhhcccchhhc
Q 041569 6 DQISDLPPSIIHHIMTYLSAKEVT-RTSILSTSWNQF 41 (285)
Q Consensus 6 d~~~~LP~~il~~I~s~L~~~~~~-~~~~vskrWr~l 41 (285)
..+..||+|++.+||++||+++++ ++++|||+|+.+
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l 85 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL 85 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence 468899999999999999999999 999999999987
No 107
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.13 E-value=2.1e-07 Score=81.75 Aligned_cols=128 Identities=17% Similarity=0.124 Sum_probs=81.1
Q ss_pred HHHHHHCCCceEEEEeeeCCCcc---ccCCccccC-cCCccEEEEcCeeecC-----CCccccccceEEeeeeecChHHH
Q 041569 83 IELATENGLEVLDFMVIADENTY---YALPQTIFS-AKLLTSLKLVGCKLEL-----PSFTCAHLKKLLLSEFPLNDREL 153 (285)
Q Consensus 83 l~~~~~~~l~~L~l~~~~~~~~~---~~l~~~~~~-~~~L~~L~L~~~~~~~-----~~~~~~~L~~L~L~~~~~~~~~l 153 (285)
+...+.++++.++++. +.... ..+...+.. +++|++|+|++|.+.. ....+++|++|+|+++.+++...
T Consensus 66 l~~~~~~~L~~L~Ls~--n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~ 143 (372)
T 3un9_A 66 FSAEVLSSLRQLNLAG--VRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEAC 143 (372)
T ss_dssp HHHHHHTTCCEEECTT--SCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHH
T ss_pred HHHHHHhhCCEEEecC--CCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHH
Confidence 3334567888888766 22221 122233332 3689999999998754 33457889999999999877666
Q ss_pred HHHH----hCCCccceeeeecCCCcCeEE---E----c-cCCcceEEEeecCCCce-----EE---EeCCCccEEEEeeC
Q 041569 154 HHLI----SKCPLLEDLSISHCHSLGRIM---I----S-SNKLEHLLISSCYGLNA-----LD---VDAPRLLSFIFDLN 213 (285)
Q Consensus 154 ~~l~----~~cp~Le~L~l~~c~~~~~~~---i----~-~~~L~~L~l~~~~~~~~-----~~---~~~p~L~~l~~~~~ 213 (285)
..+. ..+++|++|++++|. ++... + . .++|++|++++|. +.. +. ...++|++|+++++
T Consensus 144 ~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 144 KDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred HHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 5543 357889999999885 32211 1 1 2678888888875 221 10 13457777777776
Q ss_pred c
Q 041569 214 P 214 (285)
Q Consensus 214 ~ 214 (285)
.
T Consensus 222 ~ 222 (372)
T 3un9_A 222 G 222 (372)
T ss_dssp C
T ss_pred C
Confidence 5
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.13 E-value=1.9e-07 Score=77.99 Aligned_cols=138 Identities=15% Similarity=0.158 Sum_probs=97.4
Q ss_pred CCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEE-Ecc-CCcceEEEee
Q 041569 116 KLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIM-ISS-NKLEHLLISS 191 (285)
Q Consensus 116 ~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~-i~~-~~L~~L~l~~ 191 (285)
.++..+.++++.+.. ....+++|++|++.++.+++-. -+..+++|+.|++++|. ++.+. +.. ++|+.|++++
T Consensus 19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA---GMQFFTNLKELHLSHNQ-ISDLSPLKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT---TGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCS
T ss_pred HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch---HHhhCCCCCEEECCCCc-cCCChhhccCCCCCEEECCC
Confidence 445556666665554 2346899999999999885422 26679999999999985 33221 333 8999999999
Q ss_pred cCCCceEE-EeCCCccEEEEeeCcEe----eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCcc
Q 041569 192 CYGLNALD-VDAPRLLSFIFDLNPIP----IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVET 266 (285)
Q Consensus 192 ~~~~~~~~-~~~p~L~~l~~~~~~~~----~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~ 266 (285)
+. +..+. +..++|++|+++++.+. +...++|+.++++...+...+ .+..+++|+.|+++.+....
T Consensus 95 N~-l~~l~~~~~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~---------~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 95 NR-LKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV---------MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp SC-CSCCTTCCCSSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG---------GGGGCTTCCEEECTTSCCCB
T ss_pred Cc-cCCcCccccCcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh---------HHccCCCCCEEECCCCcCcc
Confidence 96 22221 11289999999998742 334568888888876665442 35678999999998888876
Q ss_pred C
Q 041569 267 N 267 (285)
Q Consensus 267 ~ 267 (285)
.
T Consensus 165 ~ 165 (263)
T 1xeu_A 165 T 165 (263)
T ss_dssp C
T ss_pred h
Confidence 5
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.12 E-value=3e-06 Score=78.39 Aligned_cols=156 Identities=15% Similarity=0.077 Sum_probs=97.8
Q ss_pred CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecCCCccccccceEEeeeeecChHHHHHHHhCCCccceeee
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLELPSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSI 168 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l 168 (285)
++++.|+++. .... .+| ..+++|+.|++++|.+...+.-..+|++|+|.++.++. +.. .+++|+.|++
T Consensus 80 ~~L~~L~Ls~--N~l~--~ip---~~l~~L~~L~Ls~N~l~~ip~l~~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQ--NALI--SLP---ELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTM--LPE---LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCS--SCCS--CCC---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC--CCC---CCTTCCEEEC
T ss_pred CCCCEEECcC--CCCc--ccc---cccCCCCEEEccCCCCCCcchhhcCCCEEECCCCcCCC--CCC---cCccccEEeC
Confidence 4688887766 2222 455 23688999999988776522212288999998887743 111 5788999999
Q ss_pred ecCCCcCeEEEccCCcceEEEeecCCCceEEEeCCCccEEEEeeCcEeee--cCCCc-------ccceeccccCCCCChh
Q 041569 169 SHCHSLGRIMISSNKLEHLLISSCYGLNALDVDAPRLLSFIFDLNPIPII--STNAL-------CPWNVTLDCDSNLDCD 239 (285)
Q Consensus 169 ~~c~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~p~L~~l~~~~~~~~~~--~~~~L-------~~l~i~~~~~~~~~~~ 239 (285)
+++. ++.+.-..++|+.|+++++. +..+....++|+.|+++++.+... ..++| +.++++.+.+..++..
T Consensus 148 s~N~-l~~lp~~l~~L~~L~Ls~N~-L~~lp~l~~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~ 225 (571)
T 3cvr_A 148 DNNQ-LTMLPELPTSLEVLSVRNNQ-LTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPEN 225 (571)
T ss_dssp CSSC-CSCCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCCCCCCGG
T ss_pred CCCc-cCcCCCcCCCcCEEECCCCC-CCCcchhhCCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCcceecCHH
Confidence 8875 33222223788899988885 222221227899998888863210 22256 7777777666655441
Q ss_pred hHHHHHHHhccCCCceEEEEEeCCCcc
Q 041569 240 WFLSLKEFLGASSQIERLCIDFSSVET 266 (285)
Q Consensus 240 ~~~~l~~~l~~~~~L~~L~L~~~~~~~ 266 (285)
+..+++|+.|+|+.+....
T Consensus 226 --------l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 226 --------ILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp --------GGGSCTTEEEECCSSSCCH
T ss_pred --------HhcCCCCCEEEeeCCcCCC
Confidence 2348889999888877753
No 110
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.07 E-value=1.7e-06 Score=80.59 Aligned_cols=95 Identities=18% Similarity=0.172 Sum_probs=49.6
Q ss_pred CccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEcc----CCcceEE
Q 041569 117 LLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISS----NKLEHLL 188 (285)
Q Consensus 117 ~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~----~~L~~L~ 188 (285)
++++|+|+++.+.. ...++++|++|+|+++.++.-. ...+..+++|++|+++++. ++.+.... ++|++|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEE
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEE
Confidence 56667777665543 1234666777777666542100 0113456667777776663 44332211 5666666
Q ss_pred EeecCCCceE---EE-eCCCccEEEEeeCc
Q 041569 189 ISSCYGLNAL---DV-DAPRLLSFIFDLNP 214 (285)
Q Consensus 189 l~~~~~~~~~---~~-~~p~L~~l~~~~~~ 214 (285)
+.++. +..+ .+ ..++|++|++.++.
T Consensus 131 Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~ 159 (635)
T 4g8a_A 131 AVETN-LASLENFPIGHLKTLKELNVAHNL 159 (635)
T ss_dssp CTTSC-CCCSTTCCCTTCTTCCEEECCSSC
T ss_pred CCCCc-CCCCChhhhhcCcccCeeccccCc
Confidence 66653 2211 12 34666666666654
No 111
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.07 E-value=1.6e-06 Score=80.10 Aligned_cols=153 Identities=12% Similarity=0.069 Sum_probs=105.8
Q ss_pred CCccEEEEcCeeecC-C-CccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEE-----Ecc-CCcceE
Q 041569 116 KLLTSLKLVGCKLEL-P-SFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIM-----ISS-NKLEHL 187 (285)
Q Consensus 116 ~~L~~L~L~~~~~~~-~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~-----i~~-~~L~~L 187 (285)
.+|++|+++++.+.. . ...+++|++|++.++.+++... ..+..+++|+.|+++++. ++.+. +.. ++|+.|
T Consensus 331 ~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L 408 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVF-QGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETL 408 (562)
T ss_dssp CCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTT-TTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEE
T ss_pred CcceEEEccCCCcccccCccCCCCceEEECCCCccccchh-hhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEE
Confidence 458888888887665 2 2578999999999998865322 224679999999999985 33221 222 899999
Q ss_pred EEeecCCCce-EE----EeCCCccEEEEeeCcEee----ecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEE
Q 041569 188 LISSCYGLNA-LD----VDAPRLLSFIFDLNPIPI----ISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLC 258 (285)
Q Consensus 188 ~l~~~~~~~~-~~----~~~p~L~~l~~~~~~~~~----~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~ 258 (285)
+++++. +.. +. ...++|+.|+++++.+.- ...++|+.++++...+..++. .+ ..+++|+.|+
T Consensus 409 ~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~-------~~-~~l~~L~~L~ 479 (562)
T 3a79_B 409 DVSLNS-LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPK-------DV-THLQALQELN 479 (562)
T ss_dssp ECTTSC-CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCT-------TT-TSSCCCSEEE
T ss_pred ECCCCc-CCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccCh-------hh-cCCCCCCEEE
Confidence 999986 222 21 246899999999987421 111589999998876665544 22 2789999999
Q ss_pred EEeCCCccCCCchhhhhhhhee
Q 041569 259 IDFSSVETNSEDATLHFLYKLR 280 (285)
Q Consensus 259 L~~~~~~~~~~~~~f~~L~~L~ 280 (285)
|+.+.....+.. .|..+++|+
T Consensus 480 L~~N~l~~l~~~-~~~~l~~L~ 500 (562)
T 3a79_B 480 VASNQLKSVPDG-VFDRLTSLQ 500 (562)
T ss_dssp CCSSCCCCCCTT-STTTCTTCC
T ss_pred CCCCCCCCCCHH-HHhcCCCCC
Confidence 999888865443 244555544
No 112
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.06 E-value=1.8e-07 Score=70.87 Aligned_cols=55 Identities=16% Similarity=0.068 Sum_probs=39.1
Q ss_pred cCCccEEEEcCeeec--C---CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCC
Q 041569 115 AKLLTSLKLVGCKLE--L---PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCH 172 (285)
Q Consensus 115 ~~~L~~L~L~~~~~~--~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~ 172 (285)
.++|+.|++++|.+. . ....+++|++|++.++.++.. ..+..+++|+.|++++|.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~ 75 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNR 75 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCc
Confidence 367888888888776 2 224578888888888877443 345667888888887775
No 113
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.05 E-value=1.4e-05 Score=72.04 Aligned_cols=55 Identities=20% Similarity=0.066 Sum_probs=26.0
Q ss_pred ccCcCCccEEEEcCeeecCCCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecC
Q 041569 112 IFSAKLLTSLKLVGCKLELPSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHC 171 (285)
Q Consensus 112 ~~~~~~L~~L~L~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 171 (285)
+..+++|+.|++++|.+...+...++|++|++.++.++. +-...++|+.|++++|
T Consensus 233 ~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~-----l~~~~~~L~~L~ls~N 287 (454)
T 1jl5_A 233 LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTD-----LPELPQSLTFLDVSEN 287 (454)
T ss_dssp CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSS
T ss_pred cCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccc-----cCcccCcCCEEECcCC
Confidence 334555666666555544322223555555555554422 0112355555555554
No 114
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.04 E-value=5.3e-06 Score=72.44 Aligned_cols=127 Identities=20% Similarity=0.150 Sum_probs=78.2
Q ss_pred HCCCceEEEEeeeCCC------ccccCCccccCcCCccEEEEcCee-ecCCCccccccceEEeeeeecChHHHHHHHh-C
Q 041569 88 ENGLEVLDFMVIADEN------TYYALPQTIFSAKLLTSLKLVGCK-LELPSFTCAHLKKLLLSEFPLNDRELHHLIS-K 159 (285)
Q Consensus 88 ~~~l~~L~l~~~~~~~------~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~-~ 159 (285)
.++++.|.+....... ....+...+..+|+|++|.|+++. +.......++|++|.|..+.++++.+..+.. .
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~ 217 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSD 217 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHHHSB
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHHHcc
Confidence 4799999875421100 011233444567999999999873 2223345899999999999999998888764 6
Q ss_pred CCccceeeeecCCC-------cCeE--EEc---cCCcceEEEeecCCC----ceEE--EeCCCccEEEEeeCc
Q 041569 160 CPLLEDLSISHCHS-------LGRI--MIS---SNKLEHLLISSCYGL----NALD--VDAPRLLSFIFDLNP 214 (285)
Q Consensus 160 cp~Le~L~l~~c~~-------~~~~--~i~---~~~L~~L~l~~~~~~----~~~~--~~~p~L~~l~~~~~~ 214 (285)
+|+|++|+|..+.+ +..+ .+. .|+|+.|.+.+|... ..+. -..|+|++|+++.+.
T Consensus 218 lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp CTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred CCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 99999999964321 1110 111 267777777776411 0010 024566666665543
No 115
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.02 E-value=1.5e-06 Score=67.75 Aligned_cols=126 Identities=16% Similarity=0.101 Sum_probs=71.4
Q ss_pred cCcCCccEEEEcCeeecC-C-Ccc-ccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEE---cc-CCcc
Q 041569 113 FSAKLLTSLKLVGCKLEL-P-SFT-CAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMI---SS-NKLE 185 (285)
Q Consensus 113 ~~~~~L~~L~L~~~~~~~-~-~~~-~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i---~~-~~L~ 185 (285)
..+++|+.|++++|.+.. . ... .++|+.|+++++.+++- ..+..+++|+.|+++++. ++.+.. .. ++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCc-ccccCcchhhcCCCCC
Confidence 456788888888887665 2 122 34788888888876542 235567788888887764 333221 11 5666
Q ss_pred eEEEeecCCCceEE----E-eCCCccEEEEeeCcEeeecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEE
Q 041569 186 HLLISSCYGLNALD----V-DAPRLLSFIFDLNPIPIISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCID 260 (285)
Q Consensus 186 ~L~l~~~~~~~~~~----~-~~p~L~~l~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~ 260 (285)
.|+++++. +..+. + ..|+|+.|++.++. +...+... ...+..+|+|+.|+++
T Consensus 92 ~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~------------------i~~~~~~~----~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 92 ELILTNNS-LVELGDLDPLASLKSLTYLCILRNP------------------VTNKKHYR----LYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp EEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG------------------GGGSTTHH----HHHHHHCTTCSEETTE
T ss_pred EEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC------------------CCCcHhHH----HHHHHHCCccceeCCC
Confidence 66666653 11111 1 34555555555543 22111111 1356778888888887
Q ss_pred eCCCc
Q 041569 261 FSSVE 265 (285)
Q Consensus 261 ~~~~~ 265 (285)
.....
T Consensus 149 ~n~~~ 153 (176)
T 1a9n_A 149 KVKLK 153 (176)
T ss_dssp ECCHH
T ss_pred cCCHH
Confidence 76654
No 116
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.01 E-value=6.7e-06 Score=71.38 Aligned_cols=179 Identities=16% Similarity=0.088 Sum_probs=101.8
Q ss_pred CCCceEEEEeeeCCCccccCCccc-cCcCCccEEEEcCeeecC--C---CccccccceEE-eeeeecChHHHHHHHhCCC
Q 041569 89 NGLEVLDFMVIADENTYYALPQTI-FSAKLLTSLKLVGCKLEL--P---SFTCAHLKKLL-LSEFPLNDRELHHLISKCP 161 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~--~---~~~~~~L~~L~-L~~~~~~~~~l~~l~~~cp 161 (285)
.++++|+++. . .-..+|... ..+++|++|+|++|.+.. . ..++++++++. +.+..++.-. ...+..++
T Consensus 30 ~~l~~L~Ls~--N--~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~ 104 (350)
T 4ay9_X 30 RNAIELRFVL--T--KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLP 104 (350)
T ss_dssp TTCSEEEEES--C--CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC-TTSBCCCT
T ss_pred CCCCEEEccC--C--cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC-chhhhhcc
Confidence 4688888776 2 223455544 447899999999886532 2 23456666544 4444332110 11245688
Q ss_pred ccceeeeecCCCcCeEE----EccCCcceEEEeecCCCceEEEe-----CCCccEEEEeeCcEeeecC-----CCcccce
Q 041569 162 LLEDLSISHCHSLGRIM----ISSNKLEHLLISSCYGLNALDVD-----APRLLSFIFDLNPIPIIST-----NALCPWN 227 (285)
Q Consensus 162 ~Le~L~l~~c~~~~~~~----i~~~~L~~L~l~~~~~~~~~~~~-----~p~L~~l~~~~~~~~~~~~-----~~L~~l~ 227 (285)
+|+.|+++++. ++.+. ....++..|.+..+..+..+... ...++.|.+.++.+..... .+++.+.
T Consensus 105 ~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~ 183 (350)
T 4ay9_X 105 NLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELN 183 (350)
T ss_dssp TCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEE
T ss_pred ccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHh
Confidence 99999998874 22211 12256667777666555555421 2457778887776432211 2455555
Q ss_pred ecc-ccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCccCCCchhhhhhhheee
Q 041569 228 VTL-DCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKLRL 281 (285)
Q Consensus 228 i~~-~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~f~~L~~L~l 281 (285)
+.. ..++.++. +.++.+++|+.|+|+.+.+...+... |.+|++|+.
T Consensus 184 l~~~n~l~~i~~-------~~f~~l~~L~~LdLs~N~l~~lp~~~-~~~L~~L~~ 230 (350)
T 4ay9_X 184 LSDNNNLEELPN-------DVFHGASGPVILDISRTRIHSLPSYG-LENLKKLRA 230 (350)
T ss_dssp CTTCTTCCCCCT-------TTTTTEECCSEEECTTSCCCCCCSSS-CTTCCEEEC
T ss_pred hccCCcccCCCH-------HHhccCcccchhhcCCCCcCccChhh-hccchHhhh
Confidence 543 34444443 34566788888888877777655433 555666654
No 117
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.99 E-value=1.1e-06 Score=76.84 Aligned_cols=77 Identities=22% Similarity=0.286 Sum_probs=40.4
Q ss_pred ccccceEEeeeeecC--------hHHHHHHHhCCCccceeeeecCCCcCeEEEccCCcceEEEeecCC----CceEEE-e
Q 041569 135 CAHLKKLLLSEFPLN--------DRELHHLISKCPLLEDLSISHCHSLGRIMISSNKLEHLLISSCYG----LNALDV-D 201 (285)
Q Consensus 135 ~~~L~~L~L~~~~~~--------~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~~~L~~L~l~~~~~----~~~~~~-~ 201 (285)
+++|+.|.+..+... ...+..++..+|+|++|.+.+|.+..-..+..++|++|++..|.- +..+.. .
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~ 217 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSD 217 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHHHSB
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHHHcc
Confidence 555666655443221 123556667777777777776633221122346777777766541 111111 3
Q ss_pred CCCccEEEEe
Q 041569 202 APRLLSFIFD 211 (285)
Q Consensus 202 ~p~L~~l~~~ 211 (285)
.|+|++|++.
T Consensus 218 lp~L~~L~L~ 227 (362)
T 2ra8_A 218 LPNLEKLVLY 227 (362)
T ss_dssp CTTCCEEEEE
T ss_pred CCCCcEEEEe
Confidence 5777777764
No 118
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.95 E-value=3.6e-07 Score=72.79 Aligned_cols=103 Identities=20% Similarity=0.231 Sum_probs=56.5
Q ss_pred CCccccCcCCccEEEEcCeeecC-C-CccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEE-Ecc-CC
Q 041569 108 LPQTIFSAKLLTSLKLVGCKLEL-P-SFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIM-ISS-NK 183 (285)
Q Consensus 108 l~~~~~~~~~L~~L~L~~~~~~~-~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~-i~~-~~ 183 (285)
+|..+..+++|+.|++++|.+.. + ...+++|+.|++.++.++. +......+|+|+.|++++|. ++.+. +.. ++
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~-l~~l~~~~~l~~ 116 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQ-IASLSGIEKLVN 116 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEE-CCCHHHHHHHHH
T ss_pred hhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCc-CCcCCccccCCC
Confidence 33355556777777777776654 2 2246777777777776642 22233445777777777763 22211 111 56
Q ss_pred cceEEEeecCCCceEE----E-eCCCccEEEEeeCc
Q 041569 184 LEHLLISSCYGLNALD----V-DAPRLLSFIFDLNP 214 (285)
Q Consensus 184 L~~L~l~~~~~~~~~~----~-~~p~L~~l~~~~~~ 214 (285)
|+.|++.++. +..+. + ..|+|++|++.++.
T Consensus 117 L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 117 LRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp SSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc
Confidence 6666666653 22110 1 35667777766654
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.95 E-value=3.9e-06 Score=73.19 Aligned_cols=104 Identities=25% Similarity=0.236 Sum_probs=64.7
Q ss_pred ccCCccccCcCCccEEEEcCeeecC----CCc-cccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEc
Q 041569 106 YALPQTIFSAKLLTSLKLVGCKLEL----PSF-TCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMIS 180 (285)
Q Consensus 106 ~~l~~~~~~~~~L~~L~L~~~~~~~----~~~-~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~ 180 (285)
..+|..+ .++++.|+|+++.+.. ... .+++|++|+|.++.++.-.- ..+..+++|+.|+++++. ++.+.-.
T Consensus 31 ~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~ 106 (361)
T 2xot_A 31 PNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS-EAFVPVPNLRYLDLSSNH-LHTLDEF 106 (361)
T ss_dssp SSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSC-CCEECTT
T ss_pred CccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh-hhccCCCCCCEEECCCCc-CCcCCHH
Confidence 3455433 2468889999887765 122 68889999998887642211 124568889999998875 4433221
Q ss_pred ---c-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCc
Q 041569 181 ---S-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNP 214 (285)
Q Consensus 181 ---~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~ 214 (285)
. ++|+.|++.++. +..+. + ..++|+.|+++++.
T Consensus 107 ~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~ 147 (361)
T 2xot_A 107 LFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQ 147 (361)
T ss_dssp TTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred HhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCc
Confidence 1 677777777763 33332 1 34667777776665
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.95 E-value=1.9e-06 Score=69.89 Aligned_cols=96 Identities=13% Similarity=0.187 Sum_probs=57.6
Q ss_pred CCccEEEEcCeeecC--C---CccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEE---Ecc-CCcce
Q 041569 116 KLLTSLKLVGCKLEL--P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIM---ISS-NKLEH 186 (285)
Q Consensus 116 ~~L~~L~L~~~~~~~--~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~---i~~-~~L~~ 186 (285)
+.++.|+|+++.+.. . ...+++|++|+|.++.++.-. ...+..+++|+.|+++++. ++.+. +.. ++|+.
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~ 109 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKT 109 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CCCCCGGGGTTCSSCCE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCc-cCccCHhHhcCCcCCCE
Confidence 457888888887654 1 235788888888888663211 1124567888888888774 23222 111 67777
Q ss_pred EEEeecCCCceEE---E-eCCCccEEEEeeCc
Q 041569 187 LLISSCYGLNALD---V-DAPRLLSFIFDLNP 214 (285)
Q Consensus 187 L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~ 214 (285)
|+++++. +..+. + ..++|+.|+++++.
T Consensus 110 L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 140 (220)
T 2v70_A 110 LMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQ 140 (220)
T ss_dssp EECTTSC-CCCBCTTSSTTCTTCSEEECTTSC
T ss_pred EECCCCc-CCeECHhHcCCCccCCEEECCCCc
Confidence 7777764 22221 1 34666666666654
No 121
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.90 E-value=2.5e-06 Score=76.32 Aligned_cols=39 Identities=28% Similarity=0.488 Sum_probs=36.2
Q ss_pred CCCcCCCCCHHHHHHHhcCCChhhHHhhhhcccchhhcc
Q 041569 4 TVDQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQ 42 (285)
Q Consensus 4 ~~d~~~~LP~~il~~I~s~L~~~~~~~~~~vskrWr~lw 42 (285)
..|.++.||+|++.+||+||+.++++++++|||+|+++.
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~ 49 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKII 49 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHH
T ss_pred ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999999999999999999999863
No 122
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.82 E-value=5e-06 Score=66.47 Aligned_cols=97 Identities=21% Similarity=0.192 Sum_probs=62.6
Q ss_pred cCCccEEEEcCeeecC-C---CccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEE---cc-CCcce
Q 041569 115 AKLLTSLKLVGCKLEL-P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMI---SS-NKLEH 186 (285)
Q Consensus 115 ~~~L~~L~L~~~~~~~-~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i---~~-~~L~~ 186 (285)
.++|++|+++++.+.. . ...+++|++|++.++.++.-. ...+..+++|++|+++++. ++.+.. .. ++|+.
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP-NGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKE 104 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC-hhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCE
Confidence 4589999999997765 2 246899999999998774211 1234578999999999875 332221 11 67777
Q ss_pred EEEeecCCCceEE---E-eCCCccEEEEeeCc
Q 041569 187 LLISSCYGLNALD---V-DAPRLLSFIFDLNP 214 (285)
Q Consensus 187 L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~ 214 (285)
|++.++. +..+. + ..++|++|++.++.
T Consensus 105 L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (208)
T 2o6s_A 105 LALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ 135 (208)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEcCCCc-CcccCHhHhccCCcCCEEECCCCc
Confidence 7777763 22221 1 24666666666654
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.80 E-value=7.4e-06 Score=66.72 Aligned_cols=122 Identities=16% Similarity=0.102 Sum_probs=77.2
Q ss_pred cccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEE-
Q 041569 105 YYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMI- 179 (285)
Q Consensus 105 ~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i- 179 (285)
...+|..+ .++|+.|+|+++.+.. ....+++|++|+|.++.++.-. ...+..+++|+.|+++++. ++.+.-
T Consensus 31 l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~-l~~l~~~ 106 (229)
T 3e6j_A 31 HASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQ-LTVLPSA 106 (229)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred cCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCc-CCccChh
Confidence 34455433 3789999999998765 2346899999999999773211 1224678999999999874 443321
Q ss_pred --cc-CCcceEEEeecCCCceEE---EeCCCccEEEEeeCcEee------ecCCCcccceeccc
Q 041569 180 --SS-NKLEHLLISSCYGLNALD---VDAPRLLSFIFDLNPIPI------ISTNALCPWNVTLD 231 (285)
Q Consensus 180 --~~-~~L~~L~l~~~~~~~~~~---~~~p~L~~l~~~~~~~~~------~~~~~L~~l~i~~~ 231 (285)
.. ++|+.|++.++. +..+. ...++|+.|++.++.+.. ...++|+.+++..+
T Consensus 107 ~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp TTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred HhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 11 788888888874 33332 145777777777765321 12235555555543
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.80 E-value=9.5e-06 Score=70.74 Aligned_cols=120 Identities=21% Similarity=0.208 Sum_probs=76.6
Q ss_pred CCCceEEEEeeeCCCccccCCcccc--CcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCc
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIF--SAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPL 162 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~ 162 (285)
..++.|+++. . ....++...+ .+++|+.|+|++|.+.. ....+++|++|+|.++.++.-. ...+..+++
T Consensus 39 ~~l~~L~Ls~--N--~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~ 113 (361)
T 2xot_A 39 SYTALLDLSH--N--NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLD-EFLFSDLQA 113 (361)
T ss_dssp TTCSEEECCS--S--CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTT
T ss_pred CCCCEEECCC--C--CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCC-HHHhCCCcC
Confidence 4577777665 2 2223333333 67889999999887755 2346789999999988763211 122456899
Q ss_pred cceeeeecCCCcCeEEE---cc-CCcceEEEeecCCCceEE-------EeCCCccEEEEeeCcE
Q 041569 163 LEDLSISHCHSLGRIMI---SS-NKLEHLLISSCYGLNALD-------VDAPRLLSFIFDLNPI 215 (285)
Q Consensus 163 Le~L~l~~c~~~~~~~i---~~-~~L~~L~l~~~~~~~~~~-------~~~p~L~~l~~~~~~~ 215 (285)
|+.|+++++. ++.+.. .. ++|+.|++.++. +..+. ...++|+.|+++++.+
T Consensus 114 L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 114 LEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCEEECCCCc-ccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 9999998875 443321 11 789999998884 33222 2367788888877753
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.77 E-value=1.1e-05 Score=65.32 Aligned_cols=105 Identities=15% Similarity=0.183 Sum_probs=66.5
Q ss_pred cccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEE-
Q 041569 105 YYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMI- 179 (285)
Q Consensus 105 ~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i- 179 (285)
...+|..+. ++|+.|+++++.+.. ....+++|++|+|.++.++.-. ...+..+++|+.|+++++. ++.+.-
T Consensus 23 l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~l~~~ 98 (220)
T 2v9t_B 23 LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNK-ITELPKS 98 (220)
T ss_dssp CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSC-CCCCCTT
T ss_pred cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCc-CCccCHh
Confidence 344555433 689999999987655 2245789999999988774221 1124567899999998874 333221
Q ss_pred --cc-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCc
Q 041569 180 --SS-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNP 214 (285)
Q Consensus 180 --~~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~ 214 (285)
.. ++|+.|++.++. +..+. + ..++|+.|+++++.
T Consensus 99 ~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 139 (220)
T 2v9t_B 99 LFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNK 139 (220)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred HccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCc
Confidence 11 678888887774 22221 1 34677777777765
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.76 E-value=1e-05 Score=65.46 Aligned_cols=121 Identities=12% Similarity=0.111 Sum_probs=78.9
Q ss_pred CCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccce
Q 041569 90 GLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLED 165 (285)
Q Consensus 90 ~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 165 (285)
.+++|+++. .......-+..+..+++|+.|+|+++.+.. ....+++|++|+|.++.++.-. ...+..+++|+.
T Consensus 33 ~~~~L~L~~--N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~ 109 (220)
T 2v70_A 33 YTAELRLNN--NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQ-HKMFKGLESLKT 109 (220)
T ss_dssp TCSEEECCS--SCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCC-GGGGTTCSSCCE
T ss_pred CCCEEEcCC--CcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccC-HhHhcCCcCCCE
Confidence 456666554 222211112234568999999999997765 2346899999999999773221 123567899999
Q ss_pred eeeecCCCcCeEE---Ecc-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCcE
Q 041569 166 LSISHCHSLGRIM---ISS-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNPI 215 (285)
Q Consensus 166 L~l~~c~~~~~~~---i~~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~ 215 (285)
|+++++. ++.+. +.. ++|+.|++.++. +..+. + ..++|++|++.++.+
T Consensus 110 L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 110 LMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp EECTTSC-CCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred EECCCCc-CCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCC
Confidence 9999885 33221 222 789999999884 33321 1 467888888888763
No 127
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.74 E-value=1e-05 Score=64.60 Aligned_cols=134 Identities=20% Similarity=0.191 Sum_probs=84.3
Q ss_pred CCCceEEEEeeeCCCccccCCccc-cCcCCccEEEEcCeeecC-C---CccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569 89 NGLEVLDFMVIADENTYYALPQTI-FSAKLLTSLKLVGCKLEL-P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLL 163 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~-~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 163 (285)
.+++.++++. .. ...++... ..+++|++|+++++.+.. . ...+++|++|++.++.++.-. ...+..+++|
T Consensus 28 ~~l~~L~l~~--n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L 102 (208)
T 2o6s_A 28 AQTTYLDLET--NS--LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP-NGVFDKLTQL 102 (208)
T ss_dssp TTCSEEECCS--SC--CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTC
T ss_pred CCCcEEEcCC--Cc--cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccC-HhHhcCccCC
Confidence 3577777765 22 22344433 457899999999887765 2 245789999999988774211 1224578899
Q ss_pred ceeeeecCCCcCeEEE---cc-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCcEeeecCCCcccceecc
Q 041569 164 EDLSISHCHSLGRIMI---SS-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNPIPIISTNALCPWNVTL 230 (285)
Q Consensus 164 e~L~l~~c~~~~~~~i---~~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~~~~~~~~L~~l~i~~ 230 (285)
++|+++++. ++.+.. .. ++|+.|++.++. +..+. + ..++|++|++.++.+. ...+.++.+.+..
T Consensus 103 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~-~~~~~l~~L~~~~ 174 (208)
T 2o6s_A 103 KELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD-CTCPGIRYLSEWI 174 (208)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC-CCTTTTHHHHHHH
T ss_pred CEEEcCCCc-CcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee-cCCCCHHHHHHHH
Confidence 999998874 333221 12 789999998874 33222 1 3678888888887532 1234566555443
No 128
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.72 E-value=1.3e-05 Score=65.21 Aligned_cols=121 Identities=20% Similarity=0.134 Sum_probs=82.4
Q ss_pred CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC-C---CccccccceEEeeeeecChHHHHHHHhCCCccc
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL-P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLLE 164 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 164 (285)
.+++.|+++.. ... ...+..+..+++|+.|+|+++.+.. . ...+++|+.|+|+++.++.-. ...+..+++|+
T Consensus 40 ~~L~~L~Ls~n--~i~-~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~ 115 (229)
T 3e6j_A 40 TNAQILYLHDN--QIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP-SAVFDRLVHLK 115 (229)
T ss_dssp TTCSEEECCSS--CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCC
T ss_pred CCCCEEEcCCC--ccC-ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccC-hhHhCcchhhC
Confidence 57888887762 211 1223445568999999999998765 2 246899999999999774211 12245789999
Q ss_pred eeeeecCCCcCeEE--Ecc-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCcE
Q 041569 165 DLSISHCHSLGRIM--ISS-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNPI 215 (285)
Q Consensus 165 ~L~l~~c~~~~~~~--i~~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~ 215 (285)
.|+++++. ++.+. +.. ++|+.|++.++. +..+. + ..++|+.|++.++.+
T Consensus 116 ~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 116 ELFMCCNK-LTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp EEECCSSC-CCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred eEeccCCc-ccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCc
Confidence 99999875 33321 112 899999999884 33332 2 468999999998863
No 129
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.72 E-value=1.5e-05 Score=70.87 Aligned_cols=38 Identities=21% Similarity=0.417 Sum_probs=36.0
Q ss_pred CCCcCCCCCHHHHHHHhcCCChhhHHhhhhcccchhhc
Q 041569 4 TVDQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQF 41 (285)
Q Consensus 4 ~~d~~~~LP~~il~~I~s~L~~~~~~~~~~vskrWr~l 41 (285)
..|.++.||+|++.+||+||+.++++++++|||+|+.+
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 46899999999999999999999999999999999875
No 130
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.70 E-value=1e-05 Score=65.40 Aligned_cols=120 Identities=13% Similarity=0.154 Sum_probs=78.8
Q ss_pred CCCceEEEEeeeCCCccccCCc-cccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569 89 NGLEVLDFMVIADENTYYALPQ-TIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLL 163 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 163 (285)
.++++|++.. .. ...++. .+..+++|+.|+|+++.+.. ....+++|++|+|+++.++.-. ..++..+++|
T Consensus 32 ~~l~~L~l~~--n~--i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L 106 (220)
T 2v9t_B 32 ETITEIRLEQ--NT--IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP-KSLFEGLFSL 106 (220)
T ss_dssp TTCCEEECCS--SC--CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCC-TTTTTTCTTC
T ss_pred cCCCEEECCC--Cc--CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccC-HhHccCCCCC
Confidence 3577777665 21 223333 34457899999999987654 2346889999999999774211 1224568999
Q ss_pred ceeeeecCCCcCeEEEc---c-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCcE
Q 041569 164 EDLSISHCHSLGRIMIS---S-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNPI 215 (285)
Q Consensus 164 e~L~l~~c~~~~~~~i~---~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~ 215 (285)
+.|+++++. ++.+... . ++|+.|++.++. +..+. + ..++|++|++.++.+
T Consensus 107 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 107 QLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCc
Confidence 999999875 3333211 2 789999999885 33322 1 357888888888763
No 131
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.68 E-value=6.7e-06 Score=73.13 Aligned_cols=38 Identities=29% Similarity=0.607 Sum_probs=35.6
Q ss_pred CCCcCCCCCHH----HHHHHhcCCChhhHHhhhhcccchhhc
Q 041569 4 TVDQISDLPPS----IIHHIMTYLSAKEVTRTSILSTSWNQF 41 (285)
Q Consensus 4 ~~d~~~~LP~~----il~~I~s~L~~~~~~~~~~vskrWr~l 41 (285)
..|.++.||+| |+.+||+||+.++++++++|||+|+.+
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~ 48 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV 48 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 46889999999 999999999999999999999999965
No 132
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.67 E-value=1.3e-06 Score=76.79 Aligned_cols=57 Identities=19% Similarity=0.103 Sum_probs=27.7
Q ss_pred CCccEEEEcCeeecC-----CC----ccccccceEEeeeeecChHHHHH---HHhCCCccceeeeecCC
Q 041569 116 KLLTSLKLVGCKLEL-----PS----FTCAHLKKLLLSEFPLNDRELHH---LISKCPLLEDLSISHCH 172 (285)
Q Consensus 116 ~~L~~L~L~~~~~~~-----~~----~~~~~L~~L~L~~~~~~~~~l~~---l~~~cp~Le~L~l~~c~ 172 (285)
++|++|+|++|.+.. .. ...++|++|+|.+|.+++.+... .+..+++|++|++++|.
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG 194 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC
Confidence 455555555555433 00 12345555555555554433222 23445555555555553
No 133
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.58 E-value=1.4e-05 Score=74.44 Aligned_cols=120 Identities=20% Similarity=0.276 Sum_probs=82.4
Q ss_pred CCCceEEEEeeeCCCccccCCc-cccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569 89 NGLEVLDFMVIADENTYYALPQ-TIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLL 163 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 163 (285)
..+++|+++. . .-..++. .+..+++|+.|+|++|.+.. ...++++|++|+|.++.++.-. ...+.++++|
T Consensus 52 ~~~~~LdLs~--N--~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~-~~~f~~L~~L 126 (635)
T 4g8a_A 52 FSTKNLDLSF--N--PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSL 126 (635)
T ss_dssp TTCCEEECTT--S--CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-GGGGTTCTTC
T ss_pred cCCCEEEeeC--C--CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC-HHHhcCCCCC
Confidence 3678888765 2 2234444 44568999999999997754 2346899999999999773211 1235678999
Q ss_pred ceeeeecCCCcCeE---EEcc-CCcceEEEeecCCCceEE-----EeCCCccEEEEeeCcE
Q 041569 164 EDLSISHCHSLGRI---MISS-NKLEHLLISSCYGLNALD-----VDAPRLLSFIFDLNPI 215 (285)
Q Consensus 164 e~L~l~~c~~~~~~---~i~~-~~L~~L~l~~~~~~~~~~-----~~~p~L~~l~~~~~~~ 215 (285)
++|++++|. ++.+ .+.. ++|+.|++.++. +..+. -..++|++|++.++.+
T Consensus 127 ~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 127 QKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp CEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CEEECCCCc-CCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccc
Confidence 999999884 3322 2333 789999999885 33222 2468899999988763
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.51 E-value=8.9e-06 Score=63.27 Aligned_cols=118 Identities=14% Similarity=0.088 Sum_probs=74.1
Q ss_pred CCceEEEEeeeCCCccccCCccccC-cCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCcccee
Q 041569 90 GLEVLDFMVIADENTYYALPQTIFS-AKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDL 166 (285)
Q Consensus 90 ~l~~L~l~~~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 166 (285)
+++++.++. .... .++. +.. .++|+.|++++|.+.. ....+++|++|+++++.++.-. ..++..+|+|+.|
T Consensus 20 ~L~~L~l~~--n~l~--~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L 93 (176)
T 1a9n_A 20 RDRELDLRG--YKIP--VIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIG-EGLDQALPDLTEL 93 (176)
T ss_dssp SCEEEECTT--SCCC--SCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEEC-SCHHHHCTTCCEE
T ss_pred CceEEEeeC--CCCc--hhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccC-cchhhcCCCCCEE
Confidence 566666654 2222 3343 334 4599999999987765 3356889999999999774311 1224568999999
Q ss_pred eeecCCCcCeEE----Ecc-CCcceEEEeecC--CCce----EEEeCCCccEEEEeeCc
Q 041569 167 SISHCHSLGRIM----ISS-NKLEHLLISSCY--GLNA----LDVDAPRLLSFIFDLNP 214 (285)
Q Consensus 167 ~l~~c~~~~~~~----i~~-~~L~~L~l~~~~--~~~~----~~~~~p~L~~l~~~~~~ 214 (285)
+++++. ++.+. +.. ++|+.|++.++. .... +....|+|+.|++.++.
T Consensus 94 ~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 94 ILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 999885 33222 222 789999999885 1111 11246777777666653
No 135
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.39 E-value=7.6e-05 Score=64.63 Aligned_cols=165 Identities=17% Similarity=0.162 Sum_probs=97.1
Q ss_pred cccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEc
Q 041569 105 YYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMIS 180 (285)
Q Consensus 105 ~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~ 180 (285)
...+|..+ .+++++|+|+++.+.. ...++++|++|+|+++.+....=...+.++++|.++...++..++.+.-.
T Consensus 21 Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 21 VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp CCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred CCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch
Confidence 34556544 3689999999998765 23468999999999986521100112456788887777666667655322
Q ss_pred ---c-CCcceEEEeecCCCceEE----EeCCCccEEEEeeCc-Ee-eec------CCCcccceeccccCCCCChhhHHHH
Q 041569 181 ---S-NKLEHLLISSCYGLNALD----VDAPRLLSFIFDLNP-IP-IIS------TNALCPWNVTLDCDSNLDCDWFLSL 244 (285)
Q Consensus 181 ---~-~~L~~L~l~~~~~~~~~~----~~~p~L~~l~~~~~~-~~-~~~------~~~L~~l~i~~~~~~~~~~~~~~~l 244 (285)
. ++|+.|++.++. +..+. ....++..+.+.+.. +. +.. ...++.++++...+..++...
T Consensus 99 ~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~---- 173 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA---- 173 (350)
T ss_dssp SBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS----
T ss_pred hhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhh----
Confidence 2 799999999985 22221 245567777776643 21 111 124556666665555443321
Q ss_pred HHHhccCCCceEEEEE-eCCCccCCCchhhhhhhheee
Q 041569 245 KEFLGASSQIERLCID-FSSVETNSEDATLHFLYKLRL 281 (285)
Q Consensus 245 ~~~l~~~~~L~~L~L~-~~~~~~~~~~~~f~~L~~L~l 281 (285)
+ ..++|++|.+. .+.....+.. .|..+++|+.
T Consensus 174 ---f-~~~~L~~l~l~~~n~l~~i~~~-~f~~l~~L~~ 206 (350)
T 4ay9_X 174 ---F-NGTQLDELNLSDNNNLEELPND-VFHGASGPVI 206 (350)
T ss_dssp ---S-TTEEEEEEECTTCTTCCCCCTT-TTTTEECCSE
T ss_pred ---c-cccchhHHhhccCCcccCCCHH-HhccCcccch
Confidence 1 23567777774 3445544433 3555655543
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.36 E-value=0.00013 Score=57.53 Aligned_cols=64 Identities=20% Similarity=0.133 Sum_probs=30.2
Q ss_pred cCCccccCcCCccEEEEcCeeecC-C---CccccccceEEeeeeecChHHHHHHHhCCCccceeeeecC
Q 041569 107 ALPQTIFSAKLLTSLKLVGCKLEL-P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHC 171 (285)
Q Consensus 107 ~l~~~~~~~~~L~~L~L~~~~~~~-~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 171 (285)
.+|..+...++|+.|+|+++.+.. . ..++++|++|+|+++.++.-.- ..+..+++|+.|+++++
T Consensus 45 ~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 45 LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP-RTFDGLKSLRLLSLHGN 112 (193)
T ss_dssp SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSS
T ss_pred hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCH-HHhCCCCCCCEEECCCC
Confidence 344444445566666666555443 1 2235555666665554421110 11234555555555554
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.36 E-value=0.00019 Score=56.53 Aligned_cols=104 Identities=20% Similarity=0.192 Sum_probs=60.5
Q ss_pred ccCCccccCcCCccEEEEcCeeecC--C---CccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEc
Q 041569 106 YALPQTIFSAKLLTSLKLVGCKLEL--P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMIS 180 (285)
Q Consensus 106 ~~l~~~~~~~~~L~~L~L~~~~~~~--~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~ 180 (285)
..+|..+. ++|+.|.++++.+.. . ...+++|++|+|.++.++.-. ...+..+++|+.|+++++. ++.+...
T Consensus 21 ~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~ 96 (192)
T 1w8a_A 21 KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENK-IKEISNK 96 (192)
T ss_dssp SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCC-CCEECSS
T ss_pred CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC-HhHcCCcccCCEEECCCCc-CCccCHH
Confidence 34554433 378888888887655 1 235788888888888764221 1124567888888888764 3332221
Q ss_pred ---c-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCc
Q 041569 181 ---S-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNP 214 (285)
Q Consensus 181 ---~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~ 214 (285)
. ++|+.|++.++. +..+. + ..|+|++|++.++.
T Consensus 97 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 97 MFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp SSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCC
T ss_pred HhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCC
Confidence 1 567777776663 33221 1 24566666665554
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.34 E-value=0.00012 Score=57.80 Aligned_cols=104 Identities=23% Similarity=0.227 Sum_probs=62.2
Q ss_pred ccCCccccCcCCccEEEEcCeeecC---CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEE---
Q 041569 106 YALPQTIFSAKLLTSLKLVGCKLEL---PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMI--- 179 (285)
Q Consensus 106 ~~l~~~~~~~~~L~~L~L~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i--- 179 (285)
..+|..+ .++|+.|.++++.+.. ....+++|++|+|+++.++.-. ...+..+++|+.|+++++. ++.+..
T Consensus 23 ~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f 98 (193)
T 2wfh_A 23 KVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLS-NQSFSNMTQLLTLILSYNR-LRCIPPRTF 98 (193)
T ss_dssp SSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCBCCTTTT
T ss_pred CcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeC-HhHccCCCCCCEEECCCCc-cCEeCHHHh
Confidence 3445433 2578888888887765 2235788888888888763211 1124567888888888774 333221
Q ss_pred cc-CCcceEEEeecCCCceEEE----eCCCccEEEEeeCc
Q 041569 180 SS-NKLEHLLISSCYGLNALDV----DAPRLLSFIFDLNP 214 (285)
Q Consensus 180 ~~-~~L~~L~l~~~~~~~~~~~----~~p~L~~l~~~~~~ 214 (285)
.. ++|+.|++.++. +..+.. ..++|+.|++.++.
T Consensus 99 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 99 DGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 11 677777777763 332221 24666666666654
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.33 E-value=0.00013 Score=56.62 Aligned_cols=96 Identities=22% Similarity=0.220 Sum_probs=54.9
Q ss_pred CCccEEEEcCeeecC-C---CccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEE---cc-CCcceE
Q 041569 116 KLLTSLKLVGCKLEL-P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMI---SS-NKLEHL 187 (285)
Q Consensus 116 ~~L~~L~L~~~~~~~-~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i---~~-~~L~~L 187 (285)
++|+.|+++++.+.. . ...+++|++|++.++.++.-. ...+..+++|+.|+++++. ++.+.. .. ++|+.|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP-DGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC-hhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCEE
Confidence 578888888876654 1 235678888888877663211 1223567888888888764 332211 11 566666
Q ss_pred EEeecCCCceEEE----eCCCccEEEEeeCc
Q 041569 188 LISSCYGLNALDV----DAPRLLSFIFDLNP 214 (285)
Q Consensus 188 ~l~~~~~~~~~~~----~~p~L~~l~~~~~~ 214 (285)
++.++. +..+.. ..++|++|++.++.
T Consensus 106 ~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 106 ALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp ECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence 666663 222221 24556666666553
No 140
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.23 E-value=4.6e-05 Score=70.51 Aligned_cols=53 Identities=23% Similarity=0.091 Sum_probs=23.9
Q ss_pred CccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecC
Q 041569 117 LLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHC 171 (285)
Q Consensus 117 ~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 171 (285)
.|+.|+|++|.+.. ....+++|+.|+|+++.++ .+-..+..+++|+.|+++++
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N 496 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDN 496 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCC
Confidence 34555555554433 1123455555555555443 11112344555555555544
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.15 E-value=0.00049 Score=58.90 Aligned_cols=90 Identities=12% Similarity=0.071 Sum_probs=57.3
Q ss_pred CCcceEEEeecCCCceEEE----eCCCccEEEEeeCcEee-----ecCCCcc-cceeccccCCCCChhhHHHHHHHhccC
Q 041569 182 NKLEHLLISSCYGLNALDV----DAPRLLSFIFDLNPIPI-----ISTNALC-PWNVTLDCDSNLDCDWFLSLKEFLGAS 251 (285)
Q Consensus 182 ~~L~~L~l~~~~~~~~~~~----~~p~L~~l~~~~~~~~~-----~~~~~L~-~l~i~~~~~~~~~~~~~~~l~~~l~~~ 251 (285)
++|+++++.++ .+..+.- .+++|+++++.+....+ ...++|+ .+.++. .+..++. ..+.+|
T Consensus 226 ~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~-------~aF~~c 296 (329)
T 3sb4_A 226 PNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTAIEF-------GAFMGC 296 (329)
T ss_dssp TTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCCEECT-------TTTTTC
T ss_pred CCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc-cceEEch-------hhhhCC
Confidence 57788877765 3444431 46788888887753222 2334677 777765 3333333 456789
Q ss_pred CCceEEEEEeCCCccCCCchhhhhhhheee
Q 041569 252 SQIERLCIDFSSVETNSEDATLHFLYKLRL 281 (285)
Q Consensus 252 ~~L~~L~L~~~~~~~~~~~~~f~~L~~L~l 281 (285)
++|+.+++.-+.+...+... |.++++|+.
T Consensus 297 ~~L~~l~l~~n~i~~I~~~a-F~~~~~L~~ 325 (329)
T 3sb4_A 297 DNLRYVLATGDKITTLGDEL-FGNGVPSKL 325 (329)
T ss_dssp TTEEEEEECSSCCCEECTTT-TCTTCCCCE
T ss_pred ccCCEEEeCCCccCccchhh-hcCCcchhh
Confidence 99999999777776655443 777777764
No 142
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.13 E-value=0.00013 Score=67.54 Aligned_cols=96 Identities=20% Similarity=0.209 Sum_probs=67.7
Q ss_pred CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC---CCccccccceEEeeeeecChHHHHHHHhCCCccce
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL---PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLED 165 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 165 (285)
..++.|+++. . ....+|. +..+++|+.|+|++|.+.. ....+++|++|+|+++.++. +. -+..+++|+.
T Consensus 441 ~~L~~L~Ls~--n--~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~ 512 (567)
T 1dce_A 441 ADVRVLHLAH--K--DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQE 512 (567)
T ss_dssp TTCSEEECTT--S--CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCE
T ss_pred cCceEEEecC--C--CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcE
Confidence 3577777655 2 2234665 7778999999999998765 23468999999999998854 22 4678999999
Q ss_pred eeeecCCCcCeEE----Ecc-CCcceEEEeecC
Q 041569 166 LSISHCHSLGRIM----ISS-NKLEHLLISSCY 193 (285)
Q Consensus 166 L~l~~c~~~~~~~----i~~-~~L~~L~l~~~~ 193 (285)
|+++++. ++.+. +.. ++|+.|+++++.
T Consensus 513 L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 513 LLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp EECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred EECCCCC-CCCCCCcHHHhcCCCCCEEEecCCc
Confidence 9999885 33221 111 566666666664
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.13 E-value=0.00026 Score=55.74 Aligned_cols=98 Identities=17% Similarity=0.118 Sum_probs=66.5
Q ss_pred CCceEEEEeeeCCCccccCCc--cccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569 90 GLEVLDFMVIADENTYYALPQ--TIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLL 163 (285)
Q Consensus 90 ~l~~L~l~~~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 163 (285)
+++++.+.. .. ...++. .+...++|+.|+|+++.+.. ....+++|++|+|+++.++.-.- ..+...++|
T Consensus 30 ~l~~L~l~~--n~--i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L 104 (192)
T 1w8a_A 30 HTTELLLND--NE--LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN-KMFLGLHQL 104 (192)
T ss_dssp TCSEEECCS--CC--CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECS-SSSTTCTTC
T ss_pred CCCEEECCC--Cc--CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCH-HHhcCCCCC
Confidence 577777665 22 223333 25568999999999998765 23468999999999997743211 124568999
Q ss_pred ceeeeecCCCcCeEEE---cc-CCcceEEEeecC
Q 041569 164 EDLSISHCHSLGRIMI---SS-NKLEHLLISSCY 193 (285)
Q Consensus 164 e~L~l~~c~~~~~~~i---~~-~~L~~L~l~~~~ 193 (285)
+.|+++++. ++.+.. .. ++|+.|++.++.
T Consensus 105 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 105 KTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CEEECCSSC-CCEECTTSSTTCTTCCEEECTTCC
T ss_pred CEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCC
Confidence 999999875 443321 12 789999998875
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.13 E-value=3.9e-05 Score=60.28 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=17.5
Q ss_pred ccccceEEeeeeecChHHHH---HHHhCCCccceeeeecC
Q 041569 135 CAHLKKLLLSEFPLNDRELH---HLISKCPLLEDLSISHC 171 (285)
Q Consensus 135 ~~~L~~L~L~~~~~~~~~l~---~l~~~cp~Le~L~l~~c 171 (285)
.++|++|+|+++.+++++.. ..+..++.|++|++++|
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 34555555555555443322 22333455555555554
No 145
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.09 E-value=0.00014 Score=57.10 Aligned_cols=94 Identities=13% Similarity=0.093 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHH--CCCceEEEEeeeC-CCcc---ccCCccccCcCCccEEEEcCeeecC-----CC---ccccccceEE
Q 041569 77 PLFDKWIELATE--NGLEVLDFMVIAD-ENTY---YALPQTIFSAKLLTSLKLVGCKLEL-----PS---FTCAHLKKLL 142 (285)
Q Consensus 77 ~~~~~~l~~~~~--~~l~~L~l~~~~~-~~~~---~~l~~~~~~~~~L~~L~L~~~~~~~-----~~---~~~~~L~~L~ 142 (285)
..+...+..+.. +.+++|++.. + .... ..+...+..+++|++|+|++|.+.. .+ ...++|++|+
T Consensus 22 ~~~~~~l~~~l~~~~~L~~L~L~~--n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~ 99 (185)
T 1io0_A 22 TDVEETLKRIQNNDPDLEEVNLNN--IMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLN 99 (185)
T ss_dssp CCHHHHHHHHHTTCTTCCEEECTT--CTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEE
T ss_pred cHHHHHHHHHHhcCCCCCEEEecC--CCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEE
Confidence 345666766665 4688888765 3 2222 2344455567899999999998765 11 2357899999
Q ss_pred eeeeecChHHHHHH---HhCCCccceeee--ecCC
Q 041569 143 LSEFPLNDRELHHL---ISKCPLLEDLSI--SHCH 172 (285)
Q Consensus 143 L~~~~~~~~~l~~l---~~~cp~Le~L~l--~~c~ 172 (285)
|+++.+++++...+ +..++.|++|++ .++.
T Consensus 100 L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 100 VESNFISGSGILALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp CCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred CcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 99999988775544 566889999999 6553
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.06 E-value=0.00037 Score=53.91 Aligned_cols=99 Identities=18% Similarity=0.231 Sum_probs=68.2
Q ss_pred CCCceEEEEeeeCCCccccCCccc-cCcCCccEEEEcCeeecC-C---CccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569 89 NGLEVLDFMVIADENTYYALPQTI-FSAKLLTSLKLVGCKLEL-P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLL 163 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~-~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 163 (285)
.+++++++.. .. ...++... ..+++|++|+++++.+.. . ...+++|++|++.++.++.-. ...+..+++|
T Consensus 28 ~~l~~L~l~~--n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L 102 (177)
T 2o6r_A 28 SSATRLELES--NK--LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP-NGVFDKLTQL 102 (177)
T ss_dssp TTCSEEECCS--SC--CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTC
T ss_pred CCCcEEEeCC--Cc--ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccC-HHHhhCCccc
Confidence 4678887765 22 22444443 457999999999998765 2 246899999999999774211 1234578999
Q ss_pred ceeeeecCCCcCeEEE---cc-CCcceEEEeecC
Q 041569 164 EDLSISHCHSLGRIMI---SS-NKLEHLLISSCY 193 (285)
Q Consensus 164 e~L~l~~c~~~~~~~i---~~-~~L~~L~l~~~~ 193 (285)
+.|+++++. ++.+.. .. ++|+.|++.++.
T Consensus 103 ~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 103 KELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence 999999884 443322 11 789999998875
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.91 E-value=0.0023 Score=54.65 Aligned_cols=70 Identities=13% Similarity=0.090 Sum_probs=40.6
Q ss_pred CCCccEEEEeeCcEee------ecCCCcccceeccccCCCCChhhHHHHHHHhccCCCce-EEEEEeCCCccCCCchhhh
Q 041569 202 APRLLSFIFDLNPIPI------ISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIE-RLCIDFSSVETNSEDATLH 274 (285)
Q Consensus 202 ~p~L~~l~~~~~~~~~------~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~-~L~L~~~~~~~~~~~~~f~ 274 (285)
+++|+++++.++.+.. ....+|+.+.++.. +..++. ..+.+|++|+ .+.+.- .+...+.. .|.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~-------~aF~~~~~L~~~l~l~~-~l~~I~~~-aF~ 294 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQ-------RVFSNCGRLAGTLELPA-SVTAIEFG-AFM 294 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECT-------TTTTTCTTCCEEEEECT-TCCEECTT-TTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehH-------HHhhCChhccEEEEEcc-cceEEchh-hhh
Confidence 6788888887754221 22346777776543 333333 4467788888 888865 44333333 355
Q ss_pred hhhheee
Q 041569 275 FLYKLRL 281 (285)
Q Consensus 275 ~L~~L~l 281 (285)
++++|+-
T Consensus 295 ~c~~L~~ 301 (329)
T 3sb4_A 295 GCDNLRY 301 (329)
T ss_dssp TCTTEEE
T ss_pred CCccCCE
Confidence 5666554
No 148
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.83 E-value=0.00014 Score=69.44 Aligned_cols=102 Identities=22% Similarity=0.244 Sum_probs=66.2
Q ss_pred CccccCcCCccEEEEcCeeecC---CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEE--Ecc-C
Q 041569 109 PQTIFSAKLLTSLKLVGCKLEL---PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIM--ISS-N 182 (285)
Q Consensus 109 ~~~~~~~~~L~~L~L~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~--i~~-~ 182 (285)
+..+...++|+.|+|++|.+.. ....+++|++|+|.++.++ .+-.-+..+++|+.|+|+++. ++.+. +.. +
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCc-CCccChhhcCCC
Confidence 3444557888999999887655 2346788899999888775 222225678889999998875 43321 111 6
Q ss_pred CcceEEEeecCCCceEE--E-eCCCccEEEEeeCc
Q 041569 183 KLEHLLISSCYGLNALD--V-DAPRLLSFIFDLNP 214 (285)
Q Consensus 183 ~L~~L~l~~~~~~~~~~--~-~~p~L~~l~~~~~~ 214 (285)
+|+.|++.++. +..+. + ..++|+.|+++++.
T Consensus 294 ~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 294 QLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp TCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSC
T ss_pred CCCEEECCCCC-CCccChhhhcCCCccEEeCCCCc
Confidence 88888888874 33332 2 45788888887776
No 149
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.83 E-value=0.00056 Score=53.97 Aligned_cols=97 Identities=18% Similarity=0.126 Sum_probs=70.1
Q ss_pred HCCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC-CC--ccccccceEEeeeeecChHHHHHHHhCCCccc
Q 041569 88 ENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL-PS--FTCAHLKKLLLSEFPLNDRELHHLISKCPLLE 164 (285)
Q Consensus 88 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~--~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 164 (285)
.++++.++++.. . ...+| .+..+++|+.|++++|.+.. +. ..+++|++|++.++.++.- . -+..+++|+
T Consensus 47 l~~L~~L~ls~n--~--l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l--~-~~~~l~~L~ 118 (198)
T 1ds9_A 47 LKACKHLALSTN--N--IEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL--S-GIEKLVNLR 118 (198)
T ss_dssp TTTCSEEECSEE--E--ESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCH--H-HHHHHHHSS
T ss_pred CCCCCEEECCCC--C--Ccccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcC--C-ccccCCCCC
Confidence 468899988763 2 22255 66678999999999998876 22 2468999999999988542 2 256789999
Q ss_pred eeeeecCCCcCeEE----Ecc-CCcceEEEeecC
Q 041569 165 DLSISHCHSLGRIM----ISS-NKLEHLLISSCY 193 (285)
Q Consensus 165 ~L~l~~c~~~~~~~----i~~-~~L~~L~l~~~~ 193 (285)
.|+++++. ++.+. +.. ++|+.|++.++.
T Consensus 119 ~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 119 VLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred EEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc
Confidence 99999885 33221 222 789999999875
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.80 E-value=0.0022 Score=56.62 Aligned_cols=93 Identities=15% Similarity=0.220 Sum_probs=51.0
Q ss_pred CcCCccEEEEcCeeecC---CCccccccceEEeeee--ecChHHHHHHHhCCCccceeeeecCCCcCeEEEcc---CCcc
Q 041569 114 SAKLLTSLKLVGCKLEL---PSFTCAHLKKLLLSEF--PLNDRELHHLISKCPLLEDLSISHCHSLGRIMISS---NKLE 185 (285)
Q Consensus 114 ~~~~L~~L~L~~~~~~~---~~~~~~~L~~L~L~~~--~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~---~~L~ 185 (285)
.|++|+.+.+.++.+.. .++.+.+|+.+.|... .++... ...|++|+.+.+.. +++.+.-.+ .+|+
T Consensus 178 ~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~a----F~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~ 251 (401)
T 4fdw_A 178 YCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQA----FLKTSQLKTIEIPE--NVSTIGQEAFRESGIT 251 (401)
T ss_dssp TCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTT----TTTCTTCCCEECCT--TCCEECTTTTTTCCCS
T ss_pred CcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhH----hhCCCCCCEEecCC--CccCccccccccCCcc
Confidence 36777777777654433 3334567777777543 233332 45688888888764 233222211 5666
Q ss_pred eEEEeecCCCceEE---E-eCCCccEEEEeeCc
Q 041569 186 HLLISSCYGLNALD---V-DAPRLLSFIFDLNP 214 (285)
Q Consensus 186 ~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~ 214 (285)
.+.+.. .+..+. + .+++|+++.+.+..
T Consensus 252 ~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 252 TVKLPN--GVTNIASRAFYYCPELAEVTTYGST 282 (401)
T ss_dssp EEEEET--TCCEECTTTTTTCTTCCEEEEESSC
T ss_pred EEEeCC--CccEEChhHhhCCCCCCEEEeCCcc
Confidence 666633 233332 1 45677777765543
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.75 E-value=0.0011 Score=51.05 Aligned_cols=56 Identities=18% Similarity=0.099 Sum_probs=31.7
Q ss_pred CCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCC
Q 041569 116 KLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCH 172 (285)
Q Consensus 116 ~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~ 172 (285)
++|+.|+|+++.+.. ....+++|++|+|.++.++.-. ...+..+++|+.|+++++.
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP-AGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC-hhhccCCCCCCEEECCCCc
Confidence 567777777766554 1234667777777776553111 1123456667777776653
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.64 E-value=0.0015 Score=50.44 Aligned_cols=55 Identities=15% Similarity=0.077 Sum_probs=30.8
Q ss_pred CCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecC
Q 041569 116 KLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHC 171 (285)
Q Consensus 116 ~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 171 (285)
++|+.|+|+++.+.. ....+++|++|+|.++.++.-. ..++..+++|+.|+++++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCC
Confidence 567777777766544 1234666777777766553210 112345666666666665
No 153
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.52 E-value=0.00038 Score=66.32 Aligned_cols=98 Identities=21% Similarity=0.217 Sum_probs=71.2
Q ss_pred CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC-C--CccccccceEEeeeeecChHHHHHHHhCCCccce
Q 041569 89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL-P--SFTCAHLKKLLLSEFPLNDRELHHLISKCPLLED 165 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~--~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 165 (285)
..++.|+++. . ....+|..++.+++|++|+|++|.+.. + ...+++|++|+|+++.++ .+-.-+..+++|+.
T Consensus 224 ~~L~~L~Ls~--n--~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 224 QLWHALDLSN--L--QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKY 297 (727)
T ss_dssp CCCCEEECTT--S--CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSE
T ss_pred CCCcEEECCC--C--CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCE
Confidence 4566666654 2 233678888889999999999998765 2 246899999999999875 22223567899999
Q ss_pred eeeecCCCcCeEE--Ecc-CCcceEEEeecC
Q 041569 166 LSISHCHSLGRIM--ISS-NKLEHLLISSCY 193 (285)
Q Consensus 166 L~l~~c~~~~~~~--i~~-~~L~~L~l~~~~ 193 (285)
|++++|. ++.+. +.. ++|+.|++.++.
T Consensus 298 L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 298 FYFFDNM-VTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp EECCSSC-CCCCCSSTTSCTTCCCEECTTSC
T ss_pred EECCCCC-CCccChhhhcCCCccEEeCCCCc
Confidence 9999884 44321 222 789999999886
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.04 E-value=0.0037 Score=48.26 Aligned_cols=79 Identities=16% Similarity=0.056 Sum_probs=56.2
Q ss_pred CCCceEEEEeeeCCCccccC-CccccCcCCccEEEEcCeeecC-C---CccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569 89 NGLEVLDFMVIADENTYYAL-PQTIFSAKLLTSLKLVGCKLEL-P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLL 163 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~-~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 163 (285)
.+++.|+++.. ....+ |..+...++|+.|+|+++.+.. + ...+++|++|+|.++.++.-. ...+..+++|
T Consensus 33 ~~L~~L~Ls~N----~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L 107 (174)
T 2r9u_A 33 TDKQRLWLNNN----QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP-RGAFDNLKSL 107 (174)
T ss_dssp TTCSEEECCSS----CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTC
T ss_pred CCCcEEEeCCC----CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeC-HHHhccccCC
Confidence 46888877652 22334 3445568999999999998876 2 246899999999999774211 1225568999
Q ss_pred ceeeeecCC
Q 041569 164 EDLSISHCH 172 (285)
Q Consensus 164 e~L~l~~c~ 172 (285)
+.|+++++.
T Consensus 108 ~~L~L~~N~ 116 (174)
T 2r9u_A 108 THIYLYNNP 116 (174)
T ss_dssp SEEECCSSC
T ss_pred CEEEeCCCC
Confidence 999999875
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=95.85 E-value=0.0056 Score=46.95 Aligned_cols=79 Identities=19% Similarity=0.142 Sum_probs=55.0
Q ss_pred CCCceEEEEeeeCCCccccC-CccccCcCCccEEEEcCeeecC-C---CccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569 89 NGLEVLDFMVIADENTYYAL-PQTIFSAKLLTSLKLVGCKLEL-P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLL 163 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~-~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 163 (285)
..++.|+++.. ....+ +..+...++|+.|+|+++.+.. . ...+++|++|+|.++.++.-. ...+..+++|
T Consensus 30 ~~l~~L~L~~N----~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L 104 (170)
T 3g39_A 30 TTTQVLYLYDN----QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP-RGAFDNLKSL 104 (170)
T ss_dssp TTCSEEECCSS----CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTC
T ss_pred CCCcEEEcCCC----cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeC-HHHhcCCCCC
Confidence 46777777652 22334 3445568999999999998766 2 246899999999999774211 1225568999
Q ss_pred ceeeeecCC
Q 041569 164 EDLSISHCH 172 (285)
Q Consensus 164 e~L~l~~c~ 172 (285)
+.|+++++.
T Consensus 105 ~~L~L~~N~ 113 (170)
T 3g39_A 105 THIWLLNNP 113 (170)
T ss_dssp CEEECCSSC
T ss_pred CEEEeCCCC
Confidence 999998864
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.71 E-value=0.0053 Score=52.65 Aligned_cols=86 Identities=20% Similarity=0.148 Sum_probs=50.8
Q ss_pred cccCCccccCcCCccEEEEcC-eeecC-C---CccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEE
Q 041569 105 YYALPQTIFSAKLLTSLKLVG-CKLEL-P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMI 179 (285)
Q Consensus 105 ~~~l~~~~~~~~~L~~L~L~~-~~~~~-~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i 179 (285)
...+|. +....+|+.|+|++ +.+.. . ...+++|+.|+|+++.++.-. ...+..+++|+.|+|+++. ++.+..
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~~ 97 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNA-LESLSW 97 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSC-CSCCCS
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC-HHHhcCCcCCCEEeCCCCc-cceeCH
Confidence 345666 66677788888875 66554 2 235778888888887663211 1124567888888887764 332211
Q ss_pred c---cCCcceEEEeecC
Q 041569 180 S---SNKLEHLLISSCY 193 (285)
Q Consensus 180 ~---~~~L~~L~l~~~~ 193 (285)
. ..+|+.|.+.++.
T Consensus 98 ~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 98 KTVQGLSLQELVLSGNP 114 (347)
T ss_dssp TTTCSCCCCEEECCSSC
T ss_pred HHcccCCceEEEeeCCC
Confidence 1 1236677766554
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.48 E-value=0.0062 Score=50.53 Aligned_cols=79 Identities=20% Similarity=0.142 Sum_probs=47.0
Q ss_pred CCCceEEEEeeeCCC-ccccCCccccCcCCccEEEEcCeeecC--CCcccc--ccceEEeeeeecCh------HHHHHHH
Q 041569 89 NGLEVLDFMVIADEN-TYYALPQTIFSAKLLTSLKLVGCKLEL--PSFTCA--HLKKLLLSEFPLND------RELHHLI 157 (285)
Q Consensus 89 ~~l~~L~l~~~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~--~L~~L~L~~~~~~~------~~l~~l~ 157 (285)
+.++.|.++.. .. ....++..+..+++|+.|+|++|.+.. ....+. +|++|.|.++.+.. .-...++
T Consensus 170 ~~L~~L~Ls~N--~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 170 PELLSLNLSNN--RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp TTCCEEECTTS--CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCEEECCCC--CCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 56777776652 21 112344444567888888888877654 112233 78888888776632 2234566
Q ss_pred hCCCccceeeee
Q 041569 158 SKCPLLEDLSIS 169 (285)
Q Consensus 158 ~~cp~Le~L~l~ 169 (285)
..+|+|+.|+=.
T Consensus 248 ~~~P~L~~LDg~ 259 (267)
T 3rw6_A 248 ERFPKLLRLDGH 259 (267)
T ss_dssp HHCTTCCEESSC
T ss_pred HHCcccCeECCc
Confidence 778888877644
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.74 E-value=0.017 Score=50.80 Aligned_cols=109 Identities=14% Similarity=0.141 Sum_probs=51.7
Q ss_pred cCcCCccEEEEcCe--eecC-CCccccccceEEeeeeec---ChHHHHHHHhCCCccceeeeecCCCcCeEEEcc----C
Q 041569 113 FSAKLLTSLKLVGC--KLEL-PSFTCAHLKKLLLSEFPL---NDRELHHLISKCPLLEDLSISHCHSLGRIMISS----N 182 (285)
Q Consensus 113 ~~~~~L~~L~L~~~--~~~~-~~~~~~~L~~L~L~~~~~---~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~----~ 182 (285)
|...+|+++.+... .+.. ...+|++|+.+.+..+.+ +...+. |.+|+.+.+.. +++.+.-.+ +
T Consensus 154 F~~~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-----~~~L~~l~lp~--~l~~I~~~aF~~~~ 226 (401)
T 4fdw_A 154 FFNSTVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-----YAGIEEVLLPV--TLKEIGSQAFLKTS 226 (401)
T ss_dssp TTTCCCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-----TCCCSEEECCT--TCCEECTTTTTTCT
T ss_pred cCCCCceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechhhEe-----ecccCEEEeCC--chheehhhHhhCCC
Confidence 33335666666542 1111 234567777777765422 333321 56677776652 233222221 5
Q ss_pred CcceEEEeecCCCceEEE---eCCCccEEEEeeCcEee-----ecCCCcccceecc
Q 041569 183 KLEHLLISSCYGLNALDV---DAPRLLSFIFDLNPIPI-----ISTNALCPWNVTL 230 (285)
Q Consensus 183 ~L~~L~l~~~~~~~~~~~---~~p~L~~l~~~~~~~~~-----~~~~~L~~l~i~~ 230 (285)
+|+.+.+... +..+.- ...+|+++.+......+ ...++|+.+.+..
T Consensus 227 ~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 227 QLKTIEIPEN--VSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp TCCCEECCTT--CCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEES
T ss_pred CCCEEecCCC--ccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCC
Confidence 6666666542 232221 12467777764433222 2334666666543
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.63 E-value=0.04 Score=43.37 Aligned_cols=116 Identities=16% Similarity=0.219 Sum_probs=62.5
Q ss_pred ccccceEEeeee-ecChHHHHH---HHhCCCccceeeeecCCCcCeEEEc--------cCCcceEEEeecCCCceEEEeC
Q 041569 135 CAHLKKLLLSEF-PLNDRELHH---LISKCPLLEDLSISHCHSLGRIMIS--------SNKLEHLLISSCYGLNALDVDA 202 (285)
Q Consensus 135 ~~~L~~L~L~~~-~~~~~~l~~---l~~~cp~Le~L~l~~c~~~~~~~i~--------~~~L~~L~l~~~~~~~~~~~~~ 202 (285)
-+.|++|+|.++ .+++++... .+..-..|+.|+|++|. +++.... ..+|++|++..+. +..-
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~---- 113 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNF-LTPE---- 113 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHH----
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCc-CCHH----
Confidence 467888888875 776665433 34456778888888774 2211110 1455555555543 1000
Q ss_pred CCccEEEEeeCc---EeeecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCc
Q 041569 203 PRLLSFIFDLNP---IPIISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVE 265 (285)
Q Consensus 203 p~L~~l~~~~~~---~~~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~ 265 (285)
|.. -.+.....|+++++.......++......+.+.+..-+.|++|.++++...
T Consensus 114 ---------Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 114 ---------LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp ---------HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred ---------HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 000 011222346666654321112333344566778888899999999876654
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=91.93 E-value=0.058 Score=46.03 Aligned_cols=78 Identities=19% Similarity=0.158 Sum_probs=46.0
Q ss_pred CCceEEEEeeeCCCccccCC-ccccCcCCccEEEEcCeeecC-C---CccccccceEEeeeeecChHHHHHHHhCCCccc
Q 041569 90 GLEVLDFMVIADENTYYALP-QTIFSAKLLTSLKLVGCKLEL-P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLLE 164 (285)
Q Consensus 90 ~l~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~-~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 164 (285)
+++.|+++. . .....++ ..+...++|+.|+|++|.+.. . ...+++|+.|+|+++.++.-. ..++...+ |+
T Consensus 32 ~L~~L~l~~--~-n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~~-L~ 106 (347)
T 2ifg_A 32 NLTELYIEN--Q-QHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS-WKTVQGLS-LQ 106 (347)
T ss_dssp CCSEEECCS--C-SSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC-STTTCSCC-CC
T ss_pred CeeEEEccC--C-CCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC-HHHcccCC-ce
Confidence 577777652 0 1222334 334457888888888887655 1 245788888888888763211 01122233 88
Q ss_pred eeeeecCC
Q 041569 165 DLSISHCH 172 (285)
Q Consensus 165 ~L~l~~c~ 172 (285)
.|++.++.
T Consensus 107 ~l~l~~N~ 114 (347)
T 2ifg_A 107 ELVLSGNP 114 (347)
T ss_dssp EEECCSSC
T ss_pred EEEeeCCC
Confidence 88887653
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=91.84 E-value=0.043 Score=45.41 Aligned_cols=33 Identities=36% Similarity=0.230 Sum_probs=16.1
Q ss_pred CCccEEEEcCeeecC-C---C--ccccccceEEeeeeec
Q 041569 116 KLLTSLKLVGCKLEL-P---S--FTCAHLKKLLLSEFPL 148 (285)
Q Consensus 116 ~~L~~L~L~~~~~~~-~---~--~~~~~L~~L~L~~~~~ 148 (285)
++|++|+|++|.+.. . . ..+++|+.|+|+++.+
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i 208 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL 208 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc
Confidence 455555555555433 0 0 1355555555555554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.87 E-value=0.084 Score=41.50 Aligned_cols=96 Identities=13% Similarity=0.123 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHH--CCCceEEEEee-e-CCCccccCCccccCcCCccEEEEcCeeecC---CC-----ccccccceEEe
Q 041569 76 SPLFDKWIELATE--NGLEVLDFMVI-A-DENTYYALPQTIFSAKLLTSLKLVGCKLEL---PS-----FTCAHLKKLLL 143 (285)
Q Consensus 76 ~~~~~~~l~~~~~--~~l~~L~l~~~-~-~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~---~~-----~~~~~L~~L~L 143 (285)
...++..+..... ..+++|.+... . .......+-..+....+|+.|+|++|.+.+ .+ ..-..|++|+|
T Consensus 26 ~t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L 105 (197)
T 1pgv_A 26 DTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNV 105 (197)
T ss_dssp -CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEEC
T ss_pred CCCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEec
Confidence 3456666766554 35777766431 0 001122333444556788888888888765 11 12467888888
Q ss_pred eeeecChHHHHHHHh---CCCccceeeeecC
Q 041569 144 SEFPLNDRELHHLIS---KCPLLEDLSISHC 171 (285)
Q Consensus 144 ~~~~~~~~~l~~l~~---~cp~Le~L~l~~c 171 (285)
.++.+++.+...+.. .-..|++|++.++
T Consensus 106 ~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 106 ESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 888887776655543 4566888888765
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=77.07 E-value=3.3 Score=35.73 Aligned_cols=32 Identities=6% Similarity=0.033 Sum_probs=19.4
Q ss_pred HHhccCCCceEEEEEeCCCccCCCchhhhhhhhee
Q 041569 246 EFLGASSQIERLCIDFSSVETNSEDATLHFLYKLR 280 (285)
Q Consensus 246 ~~l~~~~~L~~L~L~~~~~~~~~~~~~f~~L~~L~ 280 (285)
..+.+|++|+++++.-+- .... . .|.+.++||
T Consensus 360 ~aF~~C~~L~~i~lp~~~-~~~~-~-~F~~c~~L~ 391 (394)
T 4fs7_A 360 NAFQGCINLKKVELPKRL-EQYR-Y-DFEDTTKFK 391 (394)
T ss_dssp TTBTTCTTCCEEEEEGGG-GGGG-G-GBCTTCEEE
T ss_pred HHhhCCCCCCEEEECCCC-EEhh-h-eecCCCCCc
Confidence 456789999998886432 2221 2 365666665
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=73.57 E-value=2.3 Score=36.75 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=5.2
Q ss_pred HhccCCCceEEEEEeCC
Q 041569 247 FLGASSQIERLCIDFSS 263 (285)
Q Consensus 247 ~l~~~~~L~~L~L~~~~ 263 (285)
-+..+.+|+.+.+.-+.
T Consensus 373 ~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 373 AISTDSGLQNLPVAPGS 389 (394)
T ss_dssp TCBCCCCC---------
T ss_pred hhhccCCCCEEEeCCCC
Confidence 34567788887775443
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=66.10 E-value=3.2 Score=29.78 Aligned_cols=33 Identities=24% Similarity=0.122 Sum_probs=25.2
Q ss_pred CCccEEEEcCeeecC----CCccccccceEEeeeeec
Q 041569 116 KLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPL 148 (285)
Q Consensus 116 ~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~ 148 (285)
++|+.|+|+++.+.. ....+++|++|.|.++.+
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 468899999987765 224578888888888866
No 166
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=57.90 E-value=11 Score=32.25 Aligned_cols=74 Identities=22% Similarity=0.298 Sum_probs=44.4
Q ss_pred cCcCCccEEEEcCe--eecC-CCccccccceEEeeee--ecChHHHHHHHhCCCccceeeeecCCCcCeEEEc----cCC
Q 041569 113 FSAKLLTSLKLVGC--KLEL-PSFTCAHLKKLLLSEF--PLNDRELHHLISKCPLLEDLSISHCHSLGRIMIS----SNK 183 (285)
Q Consensus 113 ~~~~~L~~L~L~~~--~~~~-~~~~~~~L~~L~L~~~--~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~----~~~ 183 (285)
..|++|+.+.+... .+.. ...+|.+|+.+.|... .+++.. ...|.+|+.+.+-. .++.+.-. +.+
T Consensus 285 ~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~a----F~~C~~L~~i~ip~--sv~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 285 MNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILDDA----FAGCEQLERIAIPS--SVTKIPESAFSNCTA 358 (394)
T ss_dssp TTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEEECT--TCCBCCGGGGTTCTT
T ss_pred ccccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehHhH----hhCCCCCCEEEECc--ccCEEhHhHhhCCCC
Confidence 34788888888653 2222 3346788888888643 344443 45688888888853 23322221 156
Q ss_pred cceEEEeec
Q 041569 184 LEHLLISSC 192 (285)
Q Consensus 184 L~~L~l~~~ 192 (285)
|+++.+.+.
T Consensus 359 L~~i~~~~~ 367 (394)
T 4gt6_A 359 LNNIEYSGS 367 (394)
T ss_dssp CCEEEESSC
T ss_pred CCEEEECCc
Confidence 777766553
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=56.74 E-value=8.3 Score=33.14 Aligned_cols=128 Identities=13% Similarity=0.178 Sum_probs=69.9
Q ss_pred cCcCCccEEEEcCeeec--C-CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEcc----CCcc
Q 041569 113 FSAKLLTSLKLVGCKLE--L-PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISS----NKLE 185 (285)
Q Consensus 113 ~~~~~L~~L~L~~~~~~--~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~----~~L~ 185 (285)
..|.+|+.+.+...... . ....+..++........+.+.. ...|.+|+.+.+.. +++.+.-.+ .+|+
T Consensus 250 ~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~----F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~ 323 (394)
T 4fs7_A 250 YGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKT----FYGCSSLTEVKLLD--SVKFIGEEAFESCTSLV 323 (394)
T ss_dssp TTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTT----TTTCTTCCEEEECT--TCCEECTTTTTTCTTCC
T ss_pred cccccceeEEcCCCcceeeccccccccccceeccCceeecccc----cccccccccccccc--ccceechhhhcCCCCCC
Confidence 45788888888765322 2 3345777777777666554332 45678888887753 233222111 4566
Q ss_pred eEEEeecCCCceEE---E-eCCCccEEEEeeCcEe-----eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceE
Q 041569 186 HLLISSCYGLNALD---V-DAPRLLSFIFDLNPIP-----IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIER 256 (285)
Q Consensus 186 ~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~~-----~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~ 256 (285)
++.+.. .++.+. + .|.+|+++.+...... ....++|+.+.++.. +. .+..-+..|++|+.
T Consensus 324 ~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~~-~~--------~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 324 SIDLPY--LVEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINLKKVELPKR-LE--------QYRYDFEDTTKFKW 392 (394)
T ss_dssp EECCCT--TCCEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEGG-GG--------GGGGGBCTTCEEEE
T ss_pred EEEeCC--cccEEhHHhccCCCCCCEEEECccccEehHHHhhCCCCCCEEEECCC-CE--------EhhheecCCCCCcE
Confidence 666532 233333 1 3567777777554322 223357887777541 10 11123567888876
Q ss_pred E
Q 041569 257 L 257 (285)
Q Consensus 257 L 257 (285)
+
T Consensus 393 I 393 (394)
T 4fs7_A 393 I 393 (394)
T ss_dssp E
T ss_pred E
Confidence 4
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=46.82 E-value=14 Score=31.28 Aligned_cols=52 Identities=17% Similarity=0.353 Sum_probs=35.4
Q ss_pred CcCCccEEEEcCee--ecC-CCccccccceEEeeee---ecChHHHHHHHhCCCccceeeee
Q 041569 114 SAKLLTSLKLVGCK--LEL-PSFTCAHLKKLLLSEF---PLNDRELHHLISKCPLLEDLSIS 169 (285)
Q Consensus 114 ~~~~L~~L~L~~~~--~~~-~~~~~~~L~~L~L~~~---~~~~~~l~~l~~~cp~Le~L~l~ 169 (285)
.|.+|+.+.+.... +.. ....|.+|+.+.+... .+++.. ...|.+|+.+.+.
T Consensus 261 ~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~a----F~~c~~L~~i~lp 318 (379)
T 4h09_A 261 NCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRV----FMDCVKLSSVTLP 318 (379)
T ss_dssp TCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTTT----TTTCTTCCEEECC
T ss_pred eeehhccccccccceeccccccccccccccccccccccceehhhh----hcCCCCCCEEEcC
Confidence 47889998887542 222 3456889999998754 234443 4568899988885
No 169
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=45.36 E-value=28 Score=29.37 Aligned_cols=110 Identities=14% Similarity=0.208 Sum_probs=52.3
Q ss_pred CcCCccEEEEcCee--ecC-CCccccccceEEeeee--ecChHHHHHHHhCCCccceeeeecCCCcCeEEEc----cCCc
Q 041569 114 SAKLLTSLKLVGCK--LEL-PSFTCAHLKKLLLSEF--PLNDRELHHLISKCPLLEDLSISHCHSLGRIMIS----SNKL 184 (285)
Q Consensus 114 ~~~~L~~L~L~~~~--~~~-~~~~~~~L~~L~L~~~--~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~----~~~L 184 (285)
.+.+|+.+.+.... +.. ....+..|+.+.+... .+++.. ...|..|+.+.+.. .++.+.-. +.+|
T Consensus 215 ~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~a----F~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 215 YGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKNVTSIGSFL----LQNCTALKTLNFYA--KVKTVPYLLCSGCSNL 288 (379)
T ss_dssp TCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTTCCEECTTT----TTTCTTCCEEEECC--CCSEECTTTTTTCTTC
T ss_pred cccccceeeeccceeEEccccccCCccceEEEcCCCccEeCccc----cceeehhccccccc--cceecccccccccccc
Confidence 35667777665431 111 2345667777766443 223222 34567777766642 12221111 1455
Q ss_pred ceEEEeecCCCceEE---E-eCCCccEEEEeeCcEee-----ecCCCcccceecc
Q 041569 185 EHLLISSCYGLNALD---V-DAPRLLSFIFDLNPIPI-----ISTNALCPWNVTL 230 (285)
Q Consensus 185 ~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~~~-----~~~~~L~~l~i~~ 230 (285)
+++.+..+ .++.+. + .|++|+++.+......+ ....+|+.+.++.
T Consensus 289 ~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 289 TKVVMDNS-AIETLEPRVFMDCVKLSSVTLPTALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CEEEECCT-TCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccc-ccceehhhhhcCCCCCCEEEcCccccEEHHHHhhCCCCCCEEEECC
Confidence 55555443 233332 1 35667777665432222 2234677766643
No 170
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=29.38 E-value=39 Score=19.29 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=9.8
Q ss_pred CcCCCCCHHHHHHHhcC
Q 041569 6 DQISDLPPSIIHHIMTY 22 (285)
Q Consensus 6 d~~~~LP~~il~~I~s~ 22 (285)
+-+..||.||-..|++-
T Consensus 19 eVF~~LP~dIQ~Ells~ 35 (48)
T 2kwv_A 19 EVFKQLPADIQEEILSG 35 (48)
T ss_dssp GGTTTSCHHHHHHHTTC
T ss_pred HHHHHCcHHHHHHHHhc
Confidence 34566666666666553
Done!