Query 041570
Match_columns 394
No_of_seqs 349 out of 4281
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 08:30:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041570.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041570hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.2E-43 4.8E-48 368.7 29.1 341 28-389 27-373 (968)
2 PLN00113 leucine-rich repeat r 100.0 6.5E-35 1.4E-39 305.1 22.4 306 71-389 93-421 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.1E-29 2.4E-34 232.0 6.2 296 72-386 79-406 (873)
4 KOG4194 Membrane glycoprotein 100.0 6.2E-30 1.3E-34 233.6 4.0 300 69-386 123-430 (873)
5 KOG0444 Cytoskeletal regulator 99.9 1E-28 2.2E-33 227.5 -6.3 289 73-385 57-352 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 5.9E-27 1.3E-31 216.0 -5.1 288 71-382 78-372 (1255)
7 PLN03210 Resistant to P. syrin 99.9 5.5E-22 1.2E-26 208.8 22.8 287 72-383 612-904 (1153)
8 KOG0472 Leucine-rich repeat pr 99.9 3.3E-26 7.2E-31 200.7 -7.7 270 97-385 111-541 (565)
9 PRK15370 E3 ubiquitin-protein 99.9 1.6E-21 3.6E-26 193.1 18.1 320 24-385 57-428 (754)
10 PRK15387 E3 ubiquitin-protein 99.9 1.3E-21 2.9E-26 192.7 16.1 261 73-390 203-463 (788)
11 PLN03210 Resistant to P. syrin 99.9 2.4E-20 5.2E-25 196.5 22.4 292 70-386 531-884 (1153)
12 KOG0472 Leucine-rich repeat pr 99.9 1.1E-24 2.5E-29 191.2 -10.7 261 73-360 47-310 (565)
13 KOG0618 Serine/threonine phosp 99.8 2.2E-22 4.8E-27 193.4 -0.8 264 100-383 219-487 (1081)
14 PRK15387 E3 ubiquitin-protein 99.8 1.5E-19 3.2E-24 178.4 15.4 244 71-368 222-465 (788)
15 KOG0618 Serine/threonine phosp 99.8 1.6E-21 3.4E-26 187.6 -0.3 177 196-386 242-466 (1081)
16 cd00116 LRR_RI Leucine-rich re 99.8 1.6E-20 3.5E-25 172.3 6.1 266 96-384 19-319 (319)
17 cd00116 LRR_RI Leucine-rich re 99.8 7.5E-20 1.6E-24 167.9 10.1 261 105-387 3-293 (319)
18 PRK15370 E3 ubiquitin-protein 99.8 1.2E-19 2.6E-24 180.0 11.9 254 62-360 171-428 (754)
19 KOG4237 Extracellular matrix p 99.8 7E-20 1.5E-24 160.9 0.3 233 62-308 49-358 (498)
20 KOG4237 Extracellular matrix p 99.7 1.9E-19 4E-24 158.3 -2.2 277 100-390 67-364 (498)
21 KOG0617 Ras suppressor protein 99.6 4.8E-18 1E-22 133.1 -5.7 158 219-389 32-190 (264)
22 KOG0617 Ras suppressor protein 99.6 2.7E-17 5.9E-22 128.9 -6.0 165 124-318 29-194 (264)
23 PLN03150 hypothetical protein; 99.5 2.5E-13 5.5E-18 134.3 13.3 148 25-185 367-526 (623)
24 KOG1909 Ran GTPase-activating 99.5 1.5E-14 3.2E-19 125.9 2.6 235 98-332 28-310 (382)
25 KOG1909 Ran GTPase-activating 99.4 1.1E-13 2.4E-18 120.5 3.9 235 122-359 24-310 (382)
26 COG4886 Leucine-rich repeat (L 99.3 6.2E-12 1.3E-16 118.9 7.7 186 156-354 97-286 (394)
27 KOG3207 Beta-tubulin folding c 99.3 8.6E-13 1.9E-17 118.2 1.4 211 149-385 118-339 (505)
28 KOG1259 Nischarin, modulator o 99.3 8.8E-13 1.9E-17 112.8 1.0 133 243-388 281-415 (490)
29 PLN03150 hypothetical protein; 99.3 8.4E-12 1.8E-16 123.6 7.7 112 274-389 420-532 (623)
30 COG4886 Leucine-rich repeat (L 99.3 8E-12 1.7E-16 118.1 7.2 195 104-314 97-295 (394)
31 KOG3207 Beta-tubulin folding c 99.2 1.5E-12 3.2E-17 116.7 0.3 205 125-333 118-339 (505)
32 KOG0532 Leucine-rich repeat (L 99.2 2.9E-13 6.2E-18 125.0 -5.0 192 174-383 75-271 (722)
33 PF14580 LRR_9: Leucine-rich r 99.2 1.5E-11 3.4E-16 100.4 5.4 126 218-352 17-147 (175)
34 KOG0532 Leucine-rich repeat (L 99.1 1.8E-12 3.9E-17 119.8 -4.8 186 133-330 80-270 (722)
35 PF14580 LRR_9: Leucine-rich r 99.1 7.7E-11 1.7E-15 96.3 5.1 126 242-378 15-146 (175)
36 KOG1259 Nischarin, modulator o 99.0 1.2E-10 2.6E-15 99.9 1.5 18 316-333 395-412 (490)
37 KOG2120 SCF ubiquitin ligase, 98.9 6.3E-11 1.4E-15 101.4 -3.8 196 174-376 185-391 (419)
38 COG5238 RNA1 Ran GTPase-activa 98.9 8.8E-10 1.9E-14 93.3 2.1 88 99-186 29-132 (388)
39 PF13855 LRR_8: Leucine rich r 98.9 1.8E-09 4E-14 72.6 3.2 58 273-330 2-59 (61)
40 KOG0531 Protein phosphatase 1, 98.9 1.6E-10 3.5E-15 109.5 -2.8 242 98-360 70-318 (414)
41 KOG0531 Protein phosphatase 1, 98.8 3.4E-10 7.5E-15 107.3 -1.5 191 129-333 73-268 (414)
42 KOG4658 Apoptotic ATPase [Sign 98.8 3.3E-09 7.2E-14 107.8 4.2 81 124-205 567-652 (889)
43 KOG2120 SCF ubiquitin ligase, 98.8 3.4E-10 7.4E-15 97.0 -3.4 179 195-382 185-373 (419)
44 PF13855 LRR_8: Leucine rich r 98.8 8E-09 1.7E-13 69.4 3.8 59 321-383 2-60 (61)
45 KOG4658 Apoptotic ATPase [Sign 98.8 4.1E-09 8.9E-14 107.2 3.4 229 91-333 562-807 (889)
46 KOG4579 Leucine-rich repeat (L 98.7 4.7E-10 1E-14 85.2 -2.8 141 247-394 28-168 (177)
47 PF08263 LRRNT_2: Leucine rich 98.6 3.9E-08 8.4E-13 60.6 4.0 39 29-67 2-43 (43)
48 COG5238 RNA1 Ran GTPase-activa 98.6 1.6E-08 3.5E-13 85.9 3.0 236 122-360 24-316 (388)
49 KOG4341 F-box protein containi 98.6 6.3E-09 1.4E-13 93.3 -0.9 279 101-383 139-437 (483)
50 KOG1859 Leucine-rich repeat pr 98.6 1.3E-09 2.8E-14 104.0 -6.2 128 247-387 165-294 (1096)
51 KOG2982 Uncharacterized conser 98.5 5.8E-08 1.3E-12 83.6 3.3 61 126-186 69-133 (418)
52 KOG2982 Uncharacterized conser 98.5 4.1E-08 9E-13 84.5 1.3 103 128-230 45-156 (418)
53 KOG1859 Leucine-rich repeat pr 98.4 4.9E-09 1.1E-13 100.1 -6.0 124 130-259 166-292 (1096)
54 KOG4341 F-box protein containi 98.3 5.5E-08 1.2E-12 87.4 -1.8 299 71-377 138-457 (483)
55 KOG3665 ZYG-1-like serine/thre 98.1 2.9E-06 6.3E-11 84.5 3.8 155 220-379 122-282 (699)
56 PF12799 LRR_4: Leucine Rich r 98.0 8.9E-06 1.9E-10 50.1 4.2 37 129-166 2-38 (44)
57 KOG3665 ZYG-1-like serine/thre 98.0 3.2E-06 6.9E-11 84.2 2.5 156 193-353 120-283 (699)
58 PF12799 LRR_4: Leucine Rich r 98.0 1.8E-05 3.9E-10 48.7 4.6 36 247-285 2-37 (44)
59 KOG1644 U2-associated snRNP A' 97.9 2.5E-05 5.5E-10 63.9 6.0 103 247-354 43-149 (233)
60 KOG4579 Leucine-rich repeat (L 97.9 5.5E-07 1.2E-11 68.8 -3.5 90 243-338 50-140 (177)
61 PRK15386 type III secretion pr 97.9 5.2E-05 1.1E-09 70.1 8.0 132 193-354 50-186 (426)
62 KOG1644 U2-associated snRNP A' 97.8 3.4E-05 7.5E-10 63.1 5.7 103 155-257 45-151 (233)
63 PRK15386 type III secretion pr 97.8 6.5E-05 1.4E-09 69.4 8.2 139 147-306 47-187 (426)
64 PF13306 LRR_5: Leucine rich r 97.5 0.00042 9.2E-09 54.1 7.7 82 268-354 31-112 (129)
65 PF13306 LRR_5: Leucine rich r 97.5 0.00037 7.9E-09 54.4 7.3 125 213-348 5-129 (129)
66 KOG2739 Leucine-rich acidic nu 97.5 5.1E-05 1.1E-09 64.7 1.6 39 271-309 64-104 (260)
67 KOG2123 Uncharacterized conser 97.3 9.8E-06 2.1E-10 69.5 -4.0 96 71-180 19-123 (388)
68 KOG1947 Leucine rich repeat pr 97.3 6.1E-05 1.3E-09 73.2 0.7 85 193-278 241-327 (482)
69 KOG2739 Leucine-rich acidic nu 97.2 0.00015 3.2E-09 62.0 1.3 104 269-380 40-151 (260)
70 KOG2123 Uncharacterized conser 97.1 2.4E-05 5.1E-10 67.2 -4.4 95 99-201 18-123 (388)
71 KOG1947 Leucine rich repeat pr 96.3 0.002 4.3E-08 62.6 1.7 137 217-354 185-330 (482)
72 KOG4308 LRR-containing protein 96.2 4.5E-05 9.7E-10 72.9 -9.5 205 102-306 89-328 (478)
73 PF00560 LRR_1: Leucine Rich R 95.5 0.0063 1.4E-07 31.1 1.0 19 130-149 2-20 (22)
74 PF00560 LRR_1: Leucine Rich R 95.5 0.0064 1.4E-07 31.0 0.8 16 322-338 2-17 (22)
75 KOG4308 LRR-containing protein 94.6 0.00064 1.4E-08 65.1 -8.0 210 73-283 89-329 (478)
76 KOG3864 Uncharacterized conser 93.6 0.022 4.7E-07 47.1 0.3 79 248-328 103-184 (221)
77 PF13504 LRR_7: Leucine rich r 92.9 0.069 1.5E-06 25.2 1.3 7 324-330 5-11 (17)
78 KOG3864 Uncharacterized conser 92.8 0.023 4.9E-07 47.0 -0.8 81 273-354 102-185 (221)
79 PF13516 LRR_6: Leucine Rich r 90.9 0.11 2.4E-06 26.9 0.8 14 297-310 3-16 (24)
80 PF13516 LRR_6: Leucine Rich r 90.3 0.12 2.6E-06 26.8 0.6 16 128-143 2-17 (24)
81 smart00370 LRR Leucine-rich re 89.1 0.43 9.4E-06 25.2 2.3 16 273-288 3-18 (26)
82 smart00369 LRR_TYP Leucine-ric 89.1 0.43 9.4E-06 25.2 2.3 16 273-288 3-18 (26)
83 KOG0473 Leucine-rich repeat pr 88.1 0.0095 2.1E-07 50.3 -7.0 86 69-166 40-125 (326)
84 KOG0473 Leucine-rich repeat pr 87.7 0.014 2.9E-07 49.4 -6.3 87 268-360 38-124 (326)
85 KOG4242 Predicted myosin-I-bin 84.1 8.3 0.00018 36.6 9.0 111 69-187 163-281 (553)
86 smart00368 LRR_RI Leucine rich 72.5 3.5 7.6E-05 22.2 1.9 13 297-309 3-15 (28)
87 KOG3763 mRNA export factor TAP 71.3 3.2 6.9E-05 40.1 2.5 65 244-310 216-284 (585)
88 smart00365 LRR_SD22 Leucine-ri 69.4 4.8 0.0001 21.4 1.9 14 296-309 2-15 (26)
89 KOG4242 Predicted myosin-I-bin 66.5 28 0.00062 33.2 7.5 65 100-165 214-281 (553)
90 PF07172 GRP: Glycine rich pro 64.9 3 6.5E-05 30.4 0.8 20 1-20 1-20 (95)
91 smart00364 LRR_BAC Leucine-ric 62.4 5.5 0.00012 21.1 1.3 17 346-366 3-19 (26)
92 KOG3763 mRNA export factor TAP 62.0 5.4 0.00012 38.6 2.1 14 195-208 270-283 (585)
93 smart00367 LRR_CC Leucine-rich 54.2 8.3 0.00018 20.1 1.2 13 371-383 1-13 (26)
94 PF15240 Pro-rich: Proline-ric 26.5 44 0.00095 27.4 1.7 17 7-23 1-17 (179)
95 PF07723 LRR_2: Leucine Rich R 23.2 50 0.0011 17.3 1.0 11 248-258 2-12 (26)
96 TIGR00864 PCC polycystin catio 20.6 73 0.0016 37.7 2.5 32 252-285 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.2e-43 Score=368.68 Aligned_cols=341 Identities=26% Similarity=0.381 Sum_probs=231.4
Q ss_pred CHHHHHHHHHhhhhcCCCC-CCCCCCCCCCCCCccceeEecCCCCcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEe
Q 041570 28 LEHERFALLRLRHFFSSPS-RLQNWEDEQGDFCQWESVECSNTTGRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLI 106 (394)
Q Consensus 28 ~~~~~~al~~~~~~~~~~~-~~~~W~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~ 106 (394)
.++|+.||++|++++.+|. .+.+|.. ..++|.|.||+|+. .++|+.++++++++.... +..+..+++|+.|+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~-~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~-----~~~~~~l~~L~~L~ 99 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNS-SADVCLWQGITCNN-SSRVVSIDLSGKNISGKI-----SSAIFRLPYIQTIN 99 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCC-CCCCCcCcceecCC-CCcEEEEEecCCCccccC-----ChHHhCCCCCCEEE
Confidence 5689999999999998776 7889975 67899999999984 679999999998875322 23467788888888
Q ss_pred ccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeecccc--ccCCCCCCEEEcCCC
Q 041570 107 LSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIE--VKGSSKLQSLDLSHN 184 (394)
Q Consensus 107 l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n 184 (394)
+++|.+++.+|... +..+++|++|++++|.+++.+|. +.+++|++|++++|.+++.+| +..+++|++|++++|
T Consensus 100 Ls~n~~~~~ip~~~---~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n 174 (968)
T PLN00113 100 LSNNQLSGPIPDDI---FTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN 174 (968)
T ss_pred CCCCccCCcCChHH---hccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccC
Confidence 88888887777642 44677777777777777666654 346667777777766665555 455666667777666
Q ss_pred CCCccccc---cCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCC
Q 041570 185 NLNRIILS---SLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDG 261 (394)
Q Consensus 185 ~l~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 261 (394)
.+.+..|. ++++|++|++++|.+.+.+| ..++++++|++|++++|.+. +.+|. .+..+++|++|++++|.+++.
T Consensus 175 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~-~~~p~-~l~~l~~L~~L~L~~n~l~~~ 251 (968)
T PLN00113 175 VLVGKIPNSLTNLTSLEFLTLASNQLVGQIP-RELGQMKSLKWIYLGYNNLS-GEIPY-EIGGLTSLNHLDLVYNNLTGP 251 (968)
T ss_pred cccccCChhhhhCcCCCeeeccCCCCcCcCC-hHHcCcCCccEEECcCCccC-CcCCh-hHhcCCCCCEEECcCceeccc
Confidence 66665554 55666666666666666655 56666666666666666665 44444 556666666666666666655
Q ss_pred hhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhc
Q 041570 262 SELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGF 341 (394)
Q Consensus 262 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~ 341 (394)
+|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+.+|..+.++++|++|++++|.+.+.+|. .+
T Consensus 252 --~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~~ 328 (968)
T PLN00113 252 --IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV-AL 328 (968)
T ss_pred --cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh-hH
Confidence 566666666666666666666666666666666666666666666666666666666666666666666665555 55
Q ss_pred cCCCCCcEEEcCCCCcccCCccccccccccCCCcEEeccccccceeEe
Q 041570 342 LNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLSYSILNANCT 389 (394)
Q Consensus 342 ~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~l~g~~~ 389 (394)
..+++|+.|++++ |.++ +.+|..++.+++|+.|++++|+++|.+|
T Consensus 329 ~~l~~L~~L~L~~--n~l~-~~~p~~l~~~~~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 329 TSLPRLQVLQLWS--NKFS-GEIPKNLGKHNNLTVLDLSTNNLTGEIP 373 (968)
T ss_pred hcCCCCCEEECcC--CCCc-CcCChHHhCCCCCcEEECCCCeeEeeCC
Confidence 5666666666666 5565 5666666666666666666666655544
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.5e-35 Score=305.06 Aligned_cols=306 Identities=26% Similarity=0.313 Sum_probs=166.2
Q ss_pred CcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccc------------------hhhhhcCCCCCcE
Q 041570 71 GRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENE------------------GLEMLSRLSNLKF 132 (394)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~------------------~~~~l~~l~~L~~ 132 (394)
.+++.|+++++++.. .++...+..+++|++|++++|.+++.+|.. ....++++++|++
T Consensus 93 ~~L~~L~Ls~n~~~~----~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 168 (968)
T PLN00113 93 PYIQTINLSNNQLSG----PIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV 168 (968)
T ss_pred CCCCEEECCCCccCC----cCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence 367788888887642 233334445666666666666666554421 0111444455555
Q ss_pred EEcccccCCccchHhhhcCCCCCEEEcCCceeecccc--ccCCCCCCEEEcCCCCCCccccc---cCCCCcEEEccCccc
Q 041570 133 LDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIE--VKGSSKLQSLDLSHNNLNRIILS---SLTTLSELYLSGMGF 207 (394)
Q Consensus 133 L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~---~l~~L~~L~l~~~~~ 207 (394)
|++++|.+.+.+|..++++++|++|++++|.+.+.+| +..+++|++|++++|.+.+.+|. .+++|++|++++|.+
T Consensus 169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248 (968)
T ss_pred EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee
Confidence 5555555444445455555555555555555444443 34445555555555555544443 445555555555555
Q ss_pred CCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCcc
Q 041570 208 EGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTAT 287 (394)
Q Consensus 208 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 287 (394)
++.+| ..++++++|++|++++|.+. +.+|. .+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+++.
T Consensus 249 ~~~~p-~~l~~l~~L~~L~L~~n~l~-~~~p~-~l~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~l~~n~~~~~ 323 (968)
T PLN00113 249 TGPIP-SSLGNLKNLQYLFLYQNKLS-GPIPP-SIFSLQKLISLDLSDNSLSGE--IPELVIQLQNLEILHLFSNNFTGK 323 (968)
T ss_pred ccccC-hhHhCCCCCCEEECcCCeee-ccCch-hHhhccCcCEEECcCCeeccC--CChhHcCCCCCcEEECCCCccCCc
Confidence 55444 44555555555555555554 33333 445555566666665555554 555555555666666666666555
Q ss_pred chhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCcccccc
Q 041570 288 TTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQII 367 (394)
Q Consensus 288 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~ 367 (394)
.|..+..+++|+.|++++|.+++.+|..++.+++|+.|++++|.+.+.+|. .+..+++|+.|++++ |.+. +.+|..
T Consensus 324 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~-~~~~~~~L~~L~l~~--n~l~-~~~p~~ 399 (968)
T PLN00113 324 IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE-GLCSSGNLFKLILFS--NSLE-GEIPKS 399 (968)
T ss_pred CChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh-hHhCcCCCCEEECcC--CEec-ccCCHH
Confidence 555555566666666666666655666666666666666666666555554 444444455555554 4444 445555
Q ss_pred ccccCCCcEEeccccccceeEe
Q 041570 368 GESMASLKHLSLSYSILNANCT 389 (394)
Q Consensus 368 ~~~~~~L~~L~l~~n~l~g~~~ 389 (394)
+..+++|+.|++++|+++|.+|
T Consensus 400 ~~~~~~L~~L~L~~n~l~~~~p 421 (968)
T PLN00113 400 LGACRSLRRVRLQDNSFSGELP 421 (968)
T ss_pred HhCCCCCCEEECcCCEeeeECC
Confidence 5555555555555555555444
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=1.1e-29 Score=232.00 Aligned_cols=296 Identities=24% Similarity=0.306 Sum_probs=205.0
Q ss_pred cEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcC-CCCCcEEEcccccCCccchHhhhc
Q 041570 72 RVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSR-LSNLKFLDLRMNLFKNSISSSLAR 150 (394)
Q Consensus 72 ~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~-l~~L~~L~L~~n~~~~~~p~~l~~ 150 (394)
.+..+++++|.+.+.. ...|.++++|+++++.+|.++ .+|. ++. ..+|+.|+|.+|.++..-.++++.
T Consensus 79 ~t~~LdlsnNkl~~id-----~~~f~nl~nLq~v~l~~N~Lt-~IP~-----f~~~sghl~~L~L~~N~I~sv~se~L~~ 147 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHID-----FEFFYNLPNLQEVNLNKNELT-RIPR-----FGHESGHLEKLDLRHNLISSVTSEELSA 147 (873)
T ss_pred ceeeeeccccccccCc-----HHHHhcCCcceeeeeccchhh-hccc-----ccccccceeEEeeeccccccccHHHHHh
Confidence 4567999999875433 345788999999999999886 4444 444 456999999999998777778888
Q ss_pred CCCCCEEEcCCceeecccc---ccCCCCCCEEEcCCCCCCcccc---ccCCCCcEEEccCcccCCccChhhhcCCCCCCE
Q 041570 151 LSSLISLSLSHNKLEGSIE---VKGSSKLQSLDLSHNNLNRIIL---SSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEE 224 (394)
Q Consensus 151 l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~---~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 224 (394)
++.|++|||+.|.++. ++ +..-.++++|+|++|.++.... ..+.+|..|.|+.|+++ .+|...|.++++|+.
T Consensus 148 l~alrslDLSrN~is~-i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 148 LPALRSLDLSRNLISE-IPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLES 225 (873)
T ss_pred Hhhhhhhhhhhchhhc-ccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhh
Confidence 9999999999999876 44 4444789999999999887643 36778888889998888 666678888888888
Q ss_pred EECCCCCCCCC----------------------cccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCC
Q 041570 225 LYLSNNKGINN----------------------FVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEAN 282 (394)
Q Consensus 225 L~l~~n~~~~~----------------------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n 282 (394)
|+|..|++.-- .+....|-.+.++++|+|+.|++... --.++..+++|+.|++++|
T Consensus 226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v--n~g~lfgLt~L~~L~lS~N 303 (873)
T KOG4194|consen 226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV--NEGWLFGLTSLEQLDLSYN 303 (873)
T ss_pred hhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh--hcccccccchhhhhccchh
Confidence 88888876410 11112333445555666666665544 2345556666666666666
Q ss_pred CCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCc
Q 041570 283 NFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNAS 362 (394)
Q Consensus 283 ~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g 362 (394)
.+....++.+..+++|+.|+|++|.++.-.+.+|..+..|+.|+|+.|.++ .+.+..|..+++|++|||++ |.++ +
T Consensus 304 aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~--N~ls-~ 379 (873)
T KOG4194|consen 304 AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRS--NELS-W 379 (873)
T ss_pred hhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcC--CeEE-E
Confidence 666666666666666666666666666555556666666666666666665 44444566666777777777 6666 5
Q ss_pred ccc---ccccccCCCcEEeccccccce
Q 041570 363 FLQ---IIGESMASLKHLSLSYSILNA 386 (394)
Q Consensus 363 ~l~---~~~~~~~~L~~L~l~~n~l~g 386 (394)
.|. ..|..+++|+.|++.+|++..
T Consensus 380 ~IEDaa~~f~gl~~LrkL~l~gNqlk~ 406 (873)
T KOG4194|consen 380 CIEDAAVAFNGLPSLRKLRLTGNQLKS 406 (873)
T ss_pred EEecchhhhccchhhhheeecCceeee
Confidence 554 345556777777777776643
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=6.2e-30 Score=233.58 Aligned_cols=300 Identities=27% Similarity=0.320 Sum_probs=196.2
Q ss_pred CCCcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhh
Q 041570 69 TTGRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSL 148 (394)
Q Consensus 69 ~~~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l 148 (394)
..||++.++|..|.+.... ...++.++.||.|||+.|.++...... +..-.++++|+|++|.++..-...|
T Consensus 123 ~sghl~~L~L~~N~I~sv~-----se~L~~l~alrslDLSrN~is~i~~~s----fp~~~ni~~L~La~N~It~l~~~~F 193 (873)
T KOG4194|consen 123 ESGHLEKLDLRHNLISSVT-----SEELSALPALRSLDLSRNLISEIPKPS----FPAKVNIKKLNLASNRITTLETGHF 193 (873)
T ss_pred cccceeEEeeecccccccc-----HHHHHhHhhhhhhhhhhchhhcccCCC----CCCCCCceEEeeccccccccccccc
Confidence 3567888888877764322 333455667777777777665332221 4444567777777777765555566
Q ss_pred hcCCCCCEEEcCCceeecccc--ccCCCCCCEEEcCCCCCCcc---ccccCCCCcEEEccCcccCCccChhhhcCCCCCC
Q 041570 149 ARLSSLISLSLSHNKLEGSIE--VKGSSKLQSLDLSHNNLNRI---ILSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLE 223 (394)
Q Consensus 149 ~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 223 (394)
.++.+|.+|.|++|.++...+ +..+++|+.|+|..|++.-. ....+++|+.|.+..|++..... ..|..+.+++
T Consensus 194 ~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~D-G~Fy~l~kme 272 (873)
T KOG4194|consen 194 DSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDD-GAFYGLEKME 272 (873)
T ss_pred cccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccC-cceeeecccc
Confidence 666677777777777765222 44567777777777765432 33466677777777776663333 5566677777
Q ss_pred EEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEc
Q 041570 224 ELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNL 303 (394)
Q Consensus 224 ~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l 303 (394)
+|+|..|++. .+...++-+++.|+.|++++|.+... -++.+..+++|++|+|++|+++...+..|..++.|++|+|
T Consensus 273 ~l~L~~N~l~--~vn~g~lfgLt~L~~L~lS~NaI~ri--h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 273 HLNLETNRLQ--AVNEGWLFGLTSLEQLDLSYNAIQRI--HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNL 348 (873)
T ss_pred eeecccchhh--hhhcccccccchhhhhccchhhhhee--ecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence 7777777765 44445667777777777777777665 4566677777777777777777766777777777777777
Q ss_pred CCCcCChhhhhchhccCCCCeEecCCcccceeech--hhccCCCCCcEEEcCCCCcccCCcccc-ccccccCCCcEEecc
Q 041570 304 RHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDG--QGFLNFKSLERLDMGGARNALNASFLQ-IIGESMASLKHLSLS 380 (394)
Q Consensus 304 ~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~--~~~~~~~~L~~L~l~~~~n~l~~g~l~-~~~~~~~~L~~L~l~ 380 (394)
+.|.++-.--..|..+++|++|||++|.+.+.|-+ ..+..+++|+.|++.+ |++. .|| ..|..++.|+.|||.
T Consensus 349 s~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g--Nqlk--~I~krAfsgl~~LE~LdL~ 424 (873)
T KOG4194|consen 349 SHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG--NQLK--SIPKRAFSGLEALEHLDLG 424 (873)
T ss_pred cccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC--ceee--ecchhhhccCcccceecCC
Confidence 77777643344566677777777777777665543 3556677777777777 7776 555 566677777777777
Q ss_pred ccccce
Q 041570 381 YSILNA 386 (394)
Q Consensus 381 ~n~l~g 386 (394)
+|.+..
T Consensus 425 ~NaiaS 430 (873)
T KOG4194|consen 425 DNAIAS 430 (873)
T ss_pred CCccee
Confidence 776543
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=1e-28 Score=227.55 Aligned_cols=289 Identities=23% Similarity=0.290 Sum_probs=215.3
Q ss_pred EEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCc-cccchhhhhcCCCCCcEEEcccccCCccchHhhhcC
Q 041570 73 VIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGC-VENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARL 151 (394)
Q Consensus 73 v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l 151 (394)
+..+.+..|++..... .+..++.|+.+++..|++... +|.. +-.+..|+.|||+.|++. ..|..+..-
T Consensus 57 LEHLs~~HN~L~~vhG------ELs~Lp~LRsv~~R~N~LKnsGiP~d----iF~l~dLt~lDLShNqL~-EvP~~LE~A 125 (1255)
T KOG0444|consen 57 LEHLSMAHNQLISVHG------ELSDLPRLRSVIVRDNNLKNSGIPTD----IFRLKDLTILDLSHNQLR-EVPTNLEYA 125 (1255)
T ss_pred hhhhhhhhhhhHhhhh------hhccchhhHHHhhhccccccCCCCch----hcccccceeeecchhhhh-hcchhhhhh
Confidence 4455555555432211 256778888888888877532 3333 667888999999999887 788888888
Q ss_pred CCCCEEEcCCceeecccc---ccCCCCCCEEEcCCCCCCccccc--cCCCCcEEEccCcccCCccChhhhcCCCCCCEEE
Q 041570 152 SSLISLSLSHNKLEGSIE---VKGSSKLQSLDLSHNNLNRIILS--SLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELY 226 (394)
Q Consensus 152 ~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 226 (394)
+++-.|+|++|++.. +| +..+..|-.||++.|++....|. .+..|+.|++++|++..... ..+-.+++|+.|.
T Consensus 126 Kn~iVLNLS~N~Iet-IPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQL-rQLPsmtsL~vLh 203 (1255)
T KOG0444|consen 126 KNSIVLNLSYNNIET-IPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQL-RQLPSMTSLSVLH 203 (1255)
T ss_pred cCcEEEEcccCcccc-CCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHH-hcCccchhhhhhh
Confidence 889999999998876 55 56668888889999998888777 88889999999988753222 3445667788888
Q ss_pred CCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCC
Q 041570 227 LSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHS 306 (394)
Q Consensus 227 l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 306 (394)
+++.+-+-..+|. .+..+.+|..+|++.|.+.- +|+.+..+++|+.|+|++|+++.. ......+.+|++|+++.|
T Consensus 204 ms~TqRTl~N~Pt-sld~l~NL~dvDlS~N~Lp~---vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 204 MSNTQRTLDNIPT-SLDDLHNLRDVDLSENNLPI---VPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRN 278 (1255)
T ss_pred cccccchhhcCCC-chhhhhhhhhccccccCCCc---chHHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccc
Confidence 8887655445565 78888889999999888876 688888888899999999888742 233445577888888888
Q ss_pred cCChhhhhchhccCCCCeEecCCcccc-eeechhhccCCCCCcEEEcCCCCcccCCccccccccccCCCcEEeccccccc
Q 041570 307 SLDINLLKTIASFTSLKNLSMVSCEVN-GVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLSYSILN 385 (394)
Q Consensus 307 ~l~~~~~~~l~~~~~L~~L~l~~n~l~-~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~l~ 385 (394)
+++ .+|..+.++++|+.|.+.+|+++ .-||. .++++..|+++..++ |.+. -+|..++.|..|+.|.|++|.+.
T Consensus 279 QLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPS-GIGKL~~Levf~aan--N~LE--lVPEglcRC~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 279 QLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPS-GIGKLIQLEVFHAAN--NKLE--LVPEGLCRCVKLQKLKLDHNRLI 352 (1255)
T ss_pred hhc-cchHHHhhhHHHHHHHhccCcccccCCcc-chhhhhhhHHHHhhc--cccc--cCchhhhhhHHHHHhccccccee
Confidence 887 77888888888888888888654 24566 677777777777777 7776 77777777777777777777654
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=5.9e-27 Score=215.95 Aligned_cols=288 Identities=27% Similarity=0.311 Sum_probs=212.7
Q ss_pred CcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchH-hhh
Q 041570 71 GRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISS-SLA 149 (394)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~-~l~ 149 (394)
.+++.+.+..|++...|. ++. +..+..|..||||.|++...+.. +..-+++-.|+|++|+|. .||. -+.
T Consensus 78 p~LRsv~~R~N~LKnsGi---P~d-iF~l~dLt~lDLShNqL~EvP~~-----LE~AKn~iVLNLS~N~Ie-tIPn~lfi 147 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGI---PTD-IFRLKDLTILDLSHNQLREVPTN-----LEYAKNSIVLNLSYNNIE-TIPNSLFI 147 (1255)
T ss_pred hhhHHHhhhccccccCCC---Cch-hcccccceeeecchhhhhhcchh-----hhhhcCcEEEEcccCccc-cCCchHHH
Confidence 356667777777765553 333 46688888899998888644332 677788888888888887 5554 456
Q ss_pred cCCCCCEEEcCCceeecccc-ccCCCCCCEEEcCCCCCCccccc---cCCCCcEEEccCcccC-CccChhhhcCCCCCCE
Q 041570 150 RLSSLISLSLSHNKLEGSIE-VKGSSKLQSLDLSHNNLNRIILS---SLTTLSELYLSGMGFE-GTFDVQEFDSLSNLEE 224 (394)
Q Consensus 150 ~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~~---~l~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~ 224 (394)
++..|-+|||++|.+....| ...+..|+.|++++|.+...-.. .+++|+.|.+++..-+ ..+| .++..+.+|..
T Consensus 148 nLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~P-tsld~l~NL~d 226 (1255)
T KOG0444|consen 148 NLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIP-TSLDDLHNLRD 226 (1255)
T ss_pred hhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCC-Cchhhhhhhhh
Confidence 78888888888888877555 67778888888888877655333 5566777777776543 2345 56777788888
Q ss_pred EECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcC
Q 041570 225 LYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLR 304 (394)
Q Consensus 225 L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 304 (394)
++++.|++. .+|. .+-++++|+.|+|++|.++.. ........+|++|+++.|+++ .+|+.+..+++|+.|.+.
T Consensus 227 vDlS~N~Lp--~vPe-cly~l~~LrrLNLS~N~iteL---~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n 299 (1255)
T KOG0444|consen 227 VDLSENNLP--IVPE-CLYKLRNLRRLNLSGNKITEL---NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYAN 299 (1255)
T ss_pred ccccccCCC--cchH-HHhhhhhhheeccCcCceeee---eccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhc
Confidence 888888765 3443 677778888888888887752 333445567888888888887 677888888888888888
Q ss_pred CCcCC-hhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccccccccccCCCcEEecccc
Q 041570 305 HSSLD-INLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLSYS 382 (394)
Q Consensus 305 ~n~l~-~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n 382 (394)
+|+++ ..+|..++++.+|+.+...+|.+. -+|. .+..|+.|+.|.|+. |.+- .+|..+--++.|+.||+..|
T Consensus 300 ~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPE-glcRC~kL~kL~L~~--NrLi--TLPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 300 NNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPE-GLCRCVKLQKLKLDH--NRLI--TLPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred cCcccccCCccchhhhhhhHHHHhhccccc-cCch-hhhhhHHHHHhcccc--ccee--echhhhhhcCCcceeeccCC
Confidence 88876 457788888888888888888776 6666 777888888888888 8777 78888888888888888877
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=5.5e-22 Score=208.84 Aligned_cols=287 Identities=22% Similarity=0.195 Sum_probs=204.2
Q ss_pred cEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcC
Q 041570 72 RVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARL 151 (394)
Q Consensus 72 ~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l 151 (394)
.++.|++.++.++.... .+..+++|+.|+++++...+.+|. ++.+++|++|++++|.....+|..++++
T Consensus 612 ~L~~L~L~~s~l~~L~~------~~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L~~lp~si~~L 680 (1153)
T PLN03210 612 NLVKLQMQGSKLEKLWD------GVHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSLVELPSSIQYL 680 (1153)
T ss_pred CCcEEECcCcccccccc------ccccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCccccchhhhcc
Confidence 34455555554433222 135577778888877655555554 6677788888888776556777778888
Q ss_pred CCCCEEEcCCceeeccccc-cCCCCCCEEEcCCCCCCccccccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCC
Q 041570 152 SSLISLSLSHNKLEGSIEV-KGSSKLQSLDLSHNNLNRIILSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNN 230 (394)
Q Consensus 152 ~~L~~L~l~~n~l~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n 230 (394)
++|+.|++++|...+.+|. ..+++|+.|++++|......|...++|++|++++|.+. .+| ..+ .+++|++|.+..+
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP-~~~-~l~~L~~L~l~~~ 757 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE-EFP-SNL-RLENLDELILCEM 757 (1153)
T ss_pred CCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc-ccc-ccc-ccccccccccccc
Confidence 8888888887755555553 35678888888887666666666677888888887765 454 332 4677777777654
Q ss_pred CCCC--C---cccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCC
Q 041570 231 KGIN--N---FVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRH 305 (394)
Q Consensus 231 ~~~~--~---~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 305 (394)
.... + .+++......++|+.|++++|...+. +|..+..+++|+.|++++|...+.+|..+ .+++|+.|++++
T Consensus 758 ~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~ 834 (1153)
T PLN03210 758 KSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSG 834 (1153)
T ss_pred chhhccccccccchhhhhccccchheeCCCCCCccc--cChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCC
Confidence 3210 0 11111223456899999999877666 88889999999999999986555677655 688999999999
Q ss_pred CcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccccccccccCCCcEEeccccc
Q 041570 306 SSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLSYSI 383 (394)
Q Consensus 306 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~ 383 (394)
|..-..+|.. .++|++|++++|.++ .+|. .+..+++|+.|++++| +.+. .+|..+..+++|+.+++++|.
T Consensus 835 c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~-si~~l~~L~~L~L~~C-~~L~--~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 835 CSRLRTFPDI---STNISDLNLSRTGIE-EVPW-WIEKFSNLSFLDMNGC-NNLQ--RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCcccccccc---ccccCEeECCCCCCc-cChH-HHhcCCCCCEEECCCC-CCcC--ccCcccccccCCCeeecCCCc
Confidence 8665556543 368999999999988 7888 7889999999999998 7776 688888888999999998883
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=3.3e-26 Score=200.74 Aligned_cols=270 Identities=29% Similarity=0.367 Sum_probs=173.1
Q ss_pred CCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeecccc-ccCCCC
Q 041570 97 TPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIE-VKGSSK 175 (394)
Q Consensus 97 ~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~ 175 (394)
.....++.+++++|.+....++ ++.+..|..++..+|+++ ..|..+..+.+|..+++.+|.+....| ...++.
T Consensus 111 ~s~~~l~~l~~s~n~~~el~~~-----i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~ 184 (565)
T KOG0472|consen 111 GSLISLVKLDCSSNELKELPDS-----IGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKR 184 (565)
T ss_pred hhhhhhhhhhccccceeecCch-----HHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHH
Confidence 3445555555555555433332 444555555555555554 445555555555555555554444222 122344
Q ss_pred CCEEEcCCCCCCccccc------------------------cCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCC
Q 041570 176 LQSLDLSHNNLNRIILS------------------------SLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNK 231 (394)
Q Consensus 176 L~~L~l~~n~l~~~~~~------------------------~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 231 (394)
|++||.-.|.++..+|. ++..|+++.+..|.+. .+|.+...+++++..||+..|+
T Consensus 185 L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNk 263 (565)
T KOG0472|consen 185 LKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNK 263 (565)
T ss_pred HHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccc
Confidence 55555544444433332 3344444444444443 3444445577777777777777
Q ss_pred CCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccc-----------------------
Q 041570 232 GINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATT----------------------- 288 (394)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~----------------------- 288 (394)
+. +.|. .++.+++|+.||+++|.+++ +|..++++ +|+.|-+.||.+...-
T Consensus 264 lk--e~Pd-e~clLrsL~rLDlSNN~is~---Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dg 336 (565)
T KOG0472|consen 264 LK--EVPD-EICLLRSLERLDLSNNDISS---LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDG 336 (565)
T ss_pred cc--cCch-HHHHhhhhhhhcccCCcccc---CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCC
Confidence 75 5554 66777778888888888777 57777777 6777777776542110
Q ss_pred --------------------------------------------------------------------------------
Q 041570 289 -------------------------------------------------------------------------------- 288 (394)
Q Consensus 289 -------------------------------------------------------------------------------- 288 (394)
T Consensus 337 lS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~ 416 (565)
T KOG0472|consen 337 LSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTD 416 (565)
T ss_pred CCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHH
Confidence
Q ss_pred -----------hhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccc----------------------ee
Q 041570 289 -----------TQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVN----------------------GV 335 (394)
Q Consensus 289 -----------~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~----------------------~~ 335 (394)
|..+..+++|..|++++|.+. .+|..++.+..|+.++++.|.|. +.
T Consensus 417 l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~ 495 (565)
T KOG0472|consen 417 LVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGS 495 (565)
T ss_pred HHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccc
Confidence 223344578888888888777 67888888888999999888774 24
Q ss_pred echhhccCCCCCcEEEcCCCCcccCCccccccccccCCCcEEeccccccc
Q 041570 336 LDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLSYSILN 385 (394)
Q Consensus 336 ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~l~ 385 (394)
++...+.++.+|+.||+.+ |.+. .||..+++|++|++|++++|+|.
T Consensus 496 vd~~~l~nm~nL~tLDL~n--Ndlq--~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 496 VDPSGLKNMRNLTTLDLQN--NDLQ--QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cChHHhhhhhhcceeccCC--Cchh--hCChhhccccceeEEEecCCccC
Confidence 4443577888999999999 9998 99999999999999999999987
No 9
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.88 E-value=1.6e-21 Score=193.07 Aligned_cols=320 Identities=16% Similarity=0.171 Sum_probs=229.4
Q ss_pred CCccCHHHHHHHHHhhhhcCCCCCCC----CCCCCCCCCCccce----------------eEecCCCCcEEEEecCCCCC
Q 041570 24 SEGCLEHERFALLRLRHFFSSPSRLQ----NWEDEQGDFCQWES----------------VECSNTTGRVIGLDLSDTRN 83 (394)
Q Consensus 24 ~~~~~~~~~~al~~~~~~~~~~~~~~----~W~~~~~~~c~w~g----------------v~c~~~~~~v~~l~l~~~~~ 83 (394)
+.+..++|.+.+.+..+.+..|.... .|.. +.++|.-+. |.| ..+.|+.+...+...
T Consensus 57 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~-~~~fc~~~~~~~~~l~~~~~~~~~tv~~--~~~~vt~l~~~g~~~ 133 (754)
T PRK15370 57 PETASPEEIKSKFECLRMLAFPAYADNIQYSRGG-ADQYCILSENSQEILSIVFNTEGYTVEG--GGKSVTYTRVTESEQ 133 (754)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCchhhccccccCC-CCcccccCCcchhhheeeecCCceEEec--CCCcccccccccccc
Confidence 56778999999999999999998444 4876 678885433 666 345666666655322
Q ss_pred CCCC--CCcc--------------cc-------ccC-----CCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEc
Q 041570 84 EDLG--EGYL--------------NA-------FLF-----TPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDL 135 (394)
Q Consensus 84 ~~~~--~~~l--------------~~-------~~~-----~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L 135 (394)
.... .... .. ... .-..+...|+++++.++. +|.. + .+.|+.|++
T Consensus 134 ~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lts-LP~~----I--p~~L~~L~L 206 (754)
T PRK15370 134 ASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLTT-IPAC----I--PEQITTLIL 206 (754)
T ss_pred cccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcCc-CCcc----c--ccCCcEEEe
Confidence 1100 0000 00 000 112457789999988875 3432 2 257999999
Q ss_pred ccccCCccchHhhhcCCCCCEEEcCCceeeccccccCCCCCCEEEcCCCCCCccccccCCCCcEEEccCcccCCccChhh
Q 041570 136 RMNLFKNSISSSLARLSSLISLSLSHNKLEGSIEVKGSSKLQSLDLSHNNLNRIILSSLTTLSELYLSGMGFEGTFDVQE 215 (394)
Q Consensus 136 ~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 215 (394)
++|.++ .+|..+. ++|++|++++|.++. +|.....+|+.|++++|++........++|+.|++++|.+. .+| ..
T Consensus 207 s~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l~~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~-~LP-~~ 280 (754)
T PRK15370 207 DNNELK-SLPENLQ--GNIKTLYANSNQLTS-IPATLPDTIQEMELSINRITELPERLPSALQSLDLFHNKIS-CLP-EN 280 (754)
T ss_pred cCCCCC-cCChhhc--cCCCEEECCCCcccc-CChhhhccccEEECcCCccCcCChhHhCCCCEEECcCCccC-ccc-cc
Confidence 999998 6776654 589999999999885 55433468999999999988543334457999999999988 566 33
Q ss_pred hcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCC
Q 041570 216 FDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNF 295 (394)
Q Consensus 216 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~ 295 (394)
+. ++|+.|++++|++. .+|. .+ .++|+.|++++|.++. +|..+ .++|++|++++|.+++ +|..+.
T Consensus 281 l~--~sL~~L~Ls~N~Lt--~LP~-~l--p~sL~~L~Ls~N~Lt~---LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~-- 345 (754)
T PRK15370 281 LP--EELRYLSVYDNSIR--TLPA-HL--PSGITHLNVQSNSLTA---LPETL--PPGLKTLEAGENALTS-LPASLP-- 345 (754)
T ss_pred cC--CCCcEEECCCCccc--cCcc-cc--hhhHHHHHhcCCcccc---CCccc--cccceeccccCCcccc-CChhhc--
Confidence 32 58999999999887 3553 22 2478899999999886 45443 3689999999999886 555554
Q ss_pred CCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCcccccc----cccc
Q 041570 296 TNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQII----GESM 371 (394)
Q Consensus 296 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~----~~~~ 371 (394)
++|+.|++++|.++ .+|..+ .++|++|++++|.++ .+|. .+. ..|+.|++++ |.++ .+|.. ...+
T Consensus 346 ~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~-~l~--~sL~~LdLs~--N~L~--~LP~sl~~~~~~~ 414 (754)
T PRK15370 346 PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPE-NLP--AALQIMQASR--NNLV--RLPESLPHFRGEG 414 (754)
T ss_pred CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCH-hHH--HHHHHHhhcc--CCcc--cCchhHHHHhhcC
Confidence 78999999999998 466655 368999999999998 6777 333 3689999999 8887 56644 3445
Q ss_pred CCCcEEeccccccc
Q 041570 372 ASLKHLSLSYSILN 385 (394)
Q Consensus 372 ~~L~~L~l~~n~l~ 385 (394)
+++..+++.+|+++
T Consensus 415 ~~l~~L~L~~Npls 428 (754)
T PRK15370 415 PQPTRIIVEYNPFS 428 (754)
T ss_pred CCccEEEeeCCCcc
Confidence 88899999999875
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.3e-21 Score=192.71 Aligned_cols=261 Identities=20% Similarity=0.141 Sum_probs=200.2
Q ss_pred EEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCC
Q 041570 73 VIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLS 152 (394)
Q Consensus 73 v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~ 152 (394)
-..++++.++++.++. . + .++|+.|++.+|+++. +|. .+++|++|++++|+++ .+|.. .+
T Consensus 203 ~~~LdLs~~~LtsLP~-----~-l--~~~L~~L~L~~N~Lt~-LP~-------lp~~Lk~LdLs~N~Lt-sLP~l---p~ 262 (788)
T PRK15387 203 NAVLNVGESGLTTLPD-----C-L--PAHITTLVIPDNNLTS-LPA-------LPPELRTLEVSGNQLT-SLPVL---PP 262 (788)
T ss_pred CcEEEcCCCCCCcCCc-----c-h--hcCCCEEEccCCcCCC-CCC-------CCCCCcEEEecCCccC-cccCc---cc
Confidence 3467888887764433 1 1 1479999999999875 343 2578999999999998 56643 46
Q ss_pred CCCEEEcCCceeeccccccCCCCCCEEEcCCCCCCccccccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCC
Q 041570 153 SLISLSLSHNKLEGSIEVKGSSKLQSLDLSHNNLNRIILSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKG 232 (394)
Q Consensus 153 ~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 232 (394)
+|++|++++|.+.. +|. ...+|+.|++++|+++.. |...++|+.|++++|.+.+ +| .. ..+|+.|++++|.+
T Consensus 263 sL~~L~Ls~N~L~~-Lp~-lp~~L~~L~Ls~N~Lt~L-P~~p~~L~~LdLS~N~L~~-Lp-~l---p~~L~~L~Ls~N~L 334 (788)
T PRK15387 263 GLLELSIFSNPLTH-LPA-LPSGLCKLWIFGNQLTSL-PVLPPGLQELSVSDNQLAS-LP-AL---PSELCKLWAYNNQL 334 (788)
T ss_pred ccceeeccCCchhh-hhh-chhhcCEEECcCCccccc-cccccccceeECCCCcccc-CC-CC---cccccccccccCcc
Confidence 89999999999876 332 236789999999998864 4566889999999999884 44 22 34688899999988
Q ss_pred CCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhh
Q 041570 233 INNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINL 312 (394)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 312 (394)
. .+|. ...+|++|++++|.+++ +|.. .++|+.|++++|.++. +|.. ..+|+.|++++|.+++ +
T Consensus 335 ~--~LP~----lp~~Lq~LdLS~N~Ls~---LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-L 397 (788)
T PRK15387 335 T--SLPT----LPSGLQELSVSDNQLAS---LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-L 397 (788)
T ss_pred c--cccc----cccccceEecCCCccCC---CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-C
Confidence 6 3553 22579999999999987 4532 3578899999999885 4442 3579999999999984 5
Q ss_pred hhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccccccccccCCCcEEeccccccceeEee
Q 041570 313 LKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLSYSILNANCTI 390 (394)
Q Consensus 313 ~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~l~g~~~~ 390 (394)
|.. .++|+.|++++|.++ .+|. . ..+|+.|++++ |.++ .+|..++.+++|+.|+|++|+|+|.+|.
T Consensus 398 P~l---~s~L~~LdLS~N~Ls-sIP~-l---~~~L~~L~Ls~--NqLt--~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 398 PVL---PSELKELMVSGNRLT-SLPM-L---PSGLLSLSVYR--NQLT--RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred CCc---ccCCCEEEccCCcCC-CCCc-c---hhhhhhhhhcc--Cccc--ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 543 367999999999998 5776 3 24688999999 9998 8999999999999999999999987654
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=2.4e-20 Score=196.47 Aligned_cols=292 Identities=21% Similarity=0.273 Sum_probs=160.6
Q ss_pred CCcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCC------CccccchhhhhcCC-CCCcEEEcccccCCc
Q 041570 70 TGRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIA------GCVENEGLEMLSRL-SNLKFLDLRMNLFKN 142 (394)
Q Consensus 70 ~~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~------~~~~~~~~~~l~~l-~~L~~L~L~~n~~~~ 142 (394)
+.+|.++.+....+. ...+....|..+++|+.|.+..+... ..+|.. +..+ ++|+.|++.++.+.
T Consensus 531 ~~~v~~i~l~~~~~~---~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~----~~~lp~~Lr~L~~~~~~l~- 602 (1153)
T PLN03210 531 TKKVLGITLDIDEID---ELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEG----FDYLPPKLRLLRWDKYPLR- 602 (1153)
T ss_pred cceeeEEEeccCccc---eeeecHHHHhcCccccEEEEecccccccccceeecCcc----hhhcCcccEEEEecCCCCC-
Confidence 346676666544432 23455666788888888888655321 122321 3333 34666666666554
Q ss_pred cchHhhhcCCCCCEEEcCCceeecccc-ccCCCCCCEEEcCCCCCCccccc--cCCCCcEEEccCcccCCccChhhhcCC
Q 041570 143 SISSSLARLSSLISLSLSHNKLEGSIE-VKGSSKLQSLDLSHNNLNRIILS--SLTTLSELYLSGMGFEGTFDVQEFDSL 219 (394)
Q Consensus 143 ~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~l 219 (394)
.+|..+ ...+|+.|++.+|.+..... +..+++|+.|+++++.....+|. .+++|+.|++++|.....+| ..++++
T Consensus 603 ~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp-~si~~L 680 (1153)
T PLN03210 603 CMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELP-SSIQYL 680 (1153)
T ss_pred CCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccc-hhhhcc
Confidence 455544 34566666666665543211 34455666666665543333333 45566666666655444555 455566
Q ss_pred CCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCC---------------------CCCCChhhhhhc----------
Q 041570 220 SNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGV---------------------GIRDGSELLRSM---------- 268 (394)
Q Consensus 220 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n---------------------~~~~~~~~~~~l---------- 268 (394)
++|++|++++|... ..+|. .+ ++++|+.|++++| .+.. +|..+
T Consensus 681 ~~L~~L~L~~c~~L-~~Lp~-~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~---lP~~~~l~~L~~L~l 754 (1153)
T PLN03210 681 NKLEDLDMSRCENL-EILPT-GI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEE---FPSNLRLENLDELIL 754 (1153)
T ss_pred CCCCEEeCCCCCCc-CccCC-cC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCcccc---ccccccccccccccc
Confidence 66666666655433 33333 11 3444444444444 3322 22111
Q ss_pred --------------------CCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecC
Q 041570 269 --------------------GSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMV 328 (394)
Q Consensus 269 --------------------~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~ 328 (394)
..+++|++|++++|...+.+|.+++++++|+.|++++|..-+.+|..+ .+++|++|+++
T Consensus 755 ~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls 833 (1153)
T PLN03210 755 CEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLS 833 (1153)
T ss_pred cccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECC
Confidence 012345555555555544555556666666666666654333455443 45566666666
Q ss_pred CcccceeechhhccCCCCCcEEEcCCCCcccCCccccccccccCCCcEEecccc-ccce
Q 041570 329 SCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLSYS-ILNA 386 (394)
Q Consensus 329 ~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n-~l~g 386 (394)
+|.....+|. ...+|++|++++ |.++ .+|..+..+++|+.|++++| ++.+
T Consensus 834 ~c~~L~~~p~----~~~nL~~L~Ls~--n~i~--~iP~si~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 834 GCSRLRTFPD----ISTNISDLNLSR--TGIE--EVPWWIEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred CCCccccccc----cccccCEeECCC--CCCc--cChHHHhcCCCCCEEECCCCCCcCc
Confidence 6544334444 124677777777 7776 78888889999999999986 4554
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=1.1e-24 Score=191.16 Aligned_cols=261 Identities=25% Similarity=0.318 Sum_probs=179.0
Q ss_pred EEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCC
Q 041570 73 VIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLS 152 (394)
Q Consensus 73 v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~ 152 (394)
...+.++.|.++...+ -+..+..+.++++.+|.++..++. ++.+..++.++.+.|+++ .+|..++.+.
T Consensus 47 l~~lils~N~l~~l~~------dl~nL~~l~vl~~~~n~l~~lp~a-----ig~l~~l~~l~vs~n~ls-~lp~~i~s~~ 114 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLRE------DLKNLACLTVLNVHDNKLSQLPAA-----IGELEALKSLNVSHNKLS-ELPEQIGSLI 114 (565)
T ss_pred hhhhhhccCchhhccH------hhhcccceeEEEeccchhhhCCHH-----HHHHHHHHHhhcccchHh-hccHHHhhhh
Confidence 4456677776543322 245667777888888877655444 677777778888888776 7777888888
Q ss_pred CCCEEEcCCceeecccc-ccCCCCCCEEEcCCCCCCccccc--cCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCC
Q 041570 153 SLISLSLSHNKLEGSIE-VKGSSKLQSLDLSHNNLNRIILS--SLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSN 229 (394)
Q Consensus 153 ~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 229 (394)
+|..+++++|.+....+ +..+..++.++...|+++...+. ++.+|..+++.+|.+.. .|+..+. ++.|++++...
T Consensus 115 ~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~-m~~L~~ld~~~ 192 (565)
T KOG0472|consen 115 SLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKA-LPENHIA-MKRLKHLDCNS 192 (565)
T ss_pred hhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhh-CCHHHHH-HHHHHhcccch
Confidence 88888888888776444 66667777777777777776555 66677777777777763 3324443 77777777777
Q ss_pred CCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCC
Q 041570 230 NKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLD 309 (394)
Q Consensus 230 n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 309 (394)
|.+. .+|+ .++.+.+|+.|++..|.+.. +| .|..|..|++|+++.|.+.-...+...+++++..||+++|+++
T Consensus 193 N~L~--tlP~-~lg~l~~L~~LyL~~Nki~~---lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk 265 (565)
T KOG0472|consen 193 NLLE--TLPP-ELGGLESLELLYLRRNKIRF---LP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK 265 (565)
T ss_pred hhhh--cCCh-hhcchhhhHHHHhhhccccc---CC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc
Confidence 7664 5665 67777777777777777764 34 5666777777777777766333333346777777777777777
Q ss_pred hhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccC
Q 041570 310 INLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALN 360 (394)
Q Consensus 310 ~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~ 360 (394)
+.|+.+..+++|++||+++|.++ .+|. .++++ .|+.|-+.+ |.+.
T Consensus 266 -e~Pde~clLrsL~rLDlSNN~is-~Lp~-sLgnl-hL~~L~leG--NPlr 310 (565)
T KOG0472|consen 266 -EVPDEICLLRSLERLDLSNNDIS-SLPY-SLGNL-HLKFLALEG--NPLR 310 (565)
T ss_pred -cCchHHHHhhhhhhhcccCCccc-cCCc-ccccc-eeeehhhcC--CchH
Confidence 66777777777777777777777 5555 56776 777777777 6665
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=2.2e-22 Score=193.45 Aligned_cols=264 Identities=24% Similarity=0.276 Sum_probs=207.2
Q ss_pred CCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeecccc--ccCCCCCC
Q 041570 100 QQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIE--VKGSSKLQ 177 (394)
Q Consensus 100 ~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~ 177 (394)
+.|+.|+.+.|.++...+ -..-.+|++++++.|+++ .+|..++.+.+|+.+...+|.++. +| +...++|+
T Consensus 219 ~~l~~L~a~~n~l~~~~~------~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~ 290 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDV------HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVA-LPLRISRITSLV 290 (1081)
T ss_pred cchheeeeccCcceeecc------ccccccceeeecchhhhh-cchHHHHhcccceEecccchhHHh-hHHHHhhhhhHH
Confidence 456666666666652222 233467999999999988 677888999999999999999855 55 56668899
Q ss_pred EEEcCCCCCCccccc--cCCCCcEEEccCcccCCccChhhhcCCCC-CCEEECCCCCCCCCcccCcCCCCCCCcCEEEcC
Q 041570 178 SLDLSHNNLNRIILS--SLTTLSELYLSGMGFEGTFDVQEFDSLSN-LEELYLSNNKGINNFVVPQDYRGLSKLKRLDLS 254 (394)
Q Consensus 178 ~L~l~~n~l~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~ 254 (394)
.|.+..|++....+. .++.|+.|++..|.+. .+|...+..... |+.++.+.|++. ..|...=...+.|+.|++.
T Consensus 291 ~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~--~lp~~~e~~~~~Lq~Lyla 367 (1081)
T KOG0618|consen 291 SLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS--TLPSYEENNHAALQELYLA 367 (1081)
T ss_pred HHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc--ccccccchhhHHHHHHHHh
Confidence 999999988877655 6889999999999887 555344444433 677777777765 3443233455679999999
Q ss_pred CCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccce
Q 041570 255 GVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNG 334 (394)
Q Consensus 255 ~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 334 (394)
+|.++.. ..+.+...++|+.|+|++|++...+...+.++..|+.|+||+|+++ .+|..+..++.|+.|...+|.+.
T Consensus 368 nN~Ltd~--c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~- 443 (1081)
T KOG0618|consen 368 NNHLTDS--CFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL- 443 (1081)
T ss_pred cCccccc--chhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-
Confidence 9999876 4557888899999999999998777778889999999999999998 78899999999999999999988
Q ss_pred eechhhccCCCCCcEEEcCCCCcccCCccccccccccCCCcEEeccccc
Q 041570 335 VLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLSYSI 383 (394)
Q Consensus 335 ~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~ 383 (394)
.+|. +..++.|+.+|++. |.++...+|..... ++|++||+++|.
T Consensus 444 ~fPe--~~~l~qL~~lDlS~--N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 444 SFPE--LAQLPQLKVLDLSC--NNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred echh--hhhcCcceEEeccc--chhhhhhhhhhCCC-cccceeeccCCc
Confidence 7775 67889999999999 99986667765554 899999999984
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=1.5e-19 Score=178.35 Aligned_cols=244 Identities=21% Similarity=0.178 Sum_probs=192.2
Q ss_pred CcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhc
Q 041570 71 GRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLAR 150 (394)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~ 150 (394)
.+++.|++.+|+++.++. ..++|++|++++|.++.. |. ..++|++|++++|.+. .+|..
T Consensus 222 ~~L~~L~L~~N~Lt~LP~---------lp~~Lk~LdLs~N~LtsL-P~-------lp~sL~~L~Ls~N~L~-~Lp~l--- 280 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPA---------LPPELRTLEVSGNQLTSL-PV-------LPPGLLELSIFSNPLT-HLPAL--- 280 (788)
T ss_pred cCCCEEEccCCcCCCCCC---------CCCCCcEEEecCCccCcc-cC-------cccccceeeccCCchh-hhhhc---
Confidence 368899999998865443 247899999999999854 42 1468999999999987 56653
Q ss_pred CCCCCEEEcCCceeeccccccCCCCCCEEEcCCCCCCccccccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCC
Q 041570 151 LSSLISLSLSHNKLEGSIEVKGSSKLQSLDLSHNNLNRIILSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNN 230 (394)
Q Consensus 151 l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n 230 (394)
.++|+.|++++|.++. +|. ..++|+.|++++|++.+. |....+|+.|++++|.++ .+| . ...+|++|++++|
T Consensus 281 p~~L~~L~Ls~N~Lt~-LP~-~p~~L~~LdLS~N~L~~L-p~lp~~L~~L~Ls~N~L~-~LP-~---lp~~Lq~LdLS~N 352 (788)
T PRK15387 281 PSGLCKLWIFGNQLTS-LPV-LPPGLQELSVSDNQLASL-PALPSELCKLWAYNNQLT-SLP-T---LPSGLQELSVSDN 352 (788)
T ss_pred hhhcCEEECcCCcccc-ccc-cccccceeECCCCccccC-CCCcccccccccccCccc-ccc-c---cccccceEecCCC
Confidence 3578899999999986 442 347899999999999874 444567899999999987 455 2 2257999999999
Q ss_pred CCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCCh
Q 041570 231 KGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDI 310 (394)
Q Consensus 231 ~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~ 310 (394)
++. .+|. . ..+|+.|++++|.+++ +|.. ..+|+.|++++|.+++ +|.. .++|+.|++++|.+++
T Consensus 353 ~Ls--~LP~-l---p~~L~~L~Ls~N~L~~---LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss 416 (788)
T PRK15387 353 QLA--SLPT-L---PSELYKLWAYNNRLTS---LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS 416 (788)
T ss_pred ccC--CCCC-C---Ccccceehhhcccccc---Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC
Confidence 987 4554 2 3578899999999986 5543 3579999999999985 4432 3689999999999984
Q ss_pred hhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccccccc
Q 041570 311 NLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIG 368 (394)
Q Consensus 311 ~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~ 368 (394)
+|.. +.+|+.|++++|.++ .+|. .+.++++|+.|++++ |.++ |.++..+
T Consensus 417 -IP~l---~~~L~~L~Ls~NqLt-~LP~-sl~~L~~L~~LdLs~--N~Ls-~~~~~~L 465 (788)
T PRK15387 417 -LPML---PSGLLSLSVYRNQLT-RLPE-SLIHLSSETTVNLEG--NPLS-ERTLQAL 465 (788)
T ss_pred -CCcc---hhhhhhhhhccCccc-ccCh-HHhhccCCCeEECCC--CCCC-chHHHHH
Confidence 6653 347889999999998 8998 788999999999999 9999 8877655
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.81 E-value=1.6e-21 Score=187.63 Aligned_cols=177 Identities=23% Similarity=0.279 Sum_probs=116.6
Q ss_pred CCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccC----------------------cCCCCCCCcCEEEc
Q 041570 196 TLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVP----------------------QDYRGLSKLKRLDL 253 (394)
Q Consensus 196 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~----------------------~~~~~l~~L~~L~l 253 (394)
+|++++++++.++ .+| ++++.+.+|+.++...|++. .+|. ......+.|++|+|
T Consensus 242 nl~~~dis~n~l~-~lp-~wi~~~~nle~l~~n~N~l~--~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 242 NLQYLDISHNNLS-NLP-EWIGACANLEALNANHNRLV--ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred cceeeecchhhhh-cch-HHHHhcccceEecccchhHH--hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeee
Confidence 5666666666666 455 77777777777777777653 2221 13344556666666
Q ss_pred CCCCCCCChhhhhhc--------------------------CCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCc
Q 041570 254 SGVGIRDGSELLRSM--------------------------GSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSS 307 (394)
Q Consensus 254 ~~n~~~~~~~~~~~l--------------------------~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 307 (394)
..|.+... |+.+ ..++.|+.|.+.+|++++...+.+-+..+|+.|+|++|.
T Consensus 318 ~~N~L~~l---p~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 318 QSNNLPSL---PDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR 394 (1081)
T ss_pred hhcccccc---chHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence 66665432 1110 011235556666666666555556667778888888887
Q ss_pred CChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccccccccccCCCcEEeccccccce
Q 041570 308 LDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLSYSILNA 386 (394)
Q Consensus 308 l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~l~g 386 (394)
+.......+.+++.|++|+|++|+++ .+|. .+.+++.|++|...+ |.+. .+| .+..++.|+.+|+|.|+++-
T Consensus 395 L~~fpas~~~kle~LeeL~LSGNkL~-~Lp~-tva~~~~L~tL~ahs--N~l~--~fP-e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 395 LNSFPASKLRKLEELEELNLSGNKLT-TLPD-TVANLGRLHTLRAHS--NQLL--SFP-ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred cccCCHHHHhchHHhHHHhcccchhh-hhhH-HHHhhhhhHHHhhcC--Ccee--ech-hhhhcCcceEEecccchhhh
Confidence 77333334677777888888888877 7776 677777788887777 7776 777 77788999999999998864
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.81 E-value=1.6e-20 Score=172.32 Aligned_cols=266 Identities=26% Similarity=0.252 Sum_probs=144.8
Q ss_pred CCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCC------ccchHhhhcCCCCCEEEcCCceeecccc
Q 041570 96 FTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFK------NSISSSLARLSSLISLSLSHNKLEGSIE 169 (394)
Q Consensus 96 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~------~~~p~~l~~l~~L~~L~l~~n~l~~~~~ 169 (394)
+..+.+|++|+++++.++......+...+...+.+++++++++.+. ..++..+..+++|+.|++++|.+.+..+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 3445557777777776654333333344555666777777666554 1233445556666666666666653222
Q ss_pred --ccCC---CCCCEEEcCCCCCCccccccCCCCcEEEccCcccCCccChhhhcCC-CCCCEEECCCCCCCCCccc---Cc
Q 041570 170 --VKGS---SKLQSLDLSHNNLNRIILSSLTTLSELYLSGMGFEGTFDVQEFDSL-SNLEELYLSNNKGINNFVV---PQ 240 (394)
Q Consensus 170 --~~~~---~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~---~~ 240 (394)
+..+ ++|++|++++|++++... ..+. ..+..+ ++|++|++++|.+. +... ..
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~-----------------~~l~-~~l~~~~~~L~~L~L~~n~l~-~~~~~~~~~ 159 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGL-----------------RLLA-KGLKDLPPALEKLVLGRNRLE-GASCEALAK 159 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHH-----------------HHHH-HHHHhCCCCceEEEcCCCcCC-chHHHHHHH
Confidence 1111 235555555554442110 0111 233444 56666666666655 2111 11
Q ss_pred CCCCCCCcCEEEcCCCCCCCC--hhhhhhcCCCCCCCEEeCcCCCCCccc----hhhcCCCCCCCEEEcCCCcCChhhhh
Q 041570 241 DYRGLSKLKRLDLSGVGIRDG--SELLRSMGSFPSLKTLFLEANNFTATT----TQELHNFTNLEFLNLRHSSLDINLLK 314 (394)
Q Consensus 241 ~~~~l~~L~~L~l~~n~~~~~--~~~~~~l~~~~~L~~L~l~~n~~~~~~----~~~l~~~~~L~~L~l~~n~l~~~~~~ 314 (394)
.+..+++|++|++++|.+++. ..++..+..+++|++|++++|.+++.. +..+..+++|+.|++++|.+++..+.
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 344556677777777766532 113334455567777777777765432 33455667777777777777653333
Q ss_pred chhc-----cCCCCeEecCCcccce----eechhhccCCCCCcEEEcCCCCcccCCcc----cccccccc-CCCcEEecc
Q 041570 315 TIAS-----FTSLKNLSMVSCEVNG----VLDGQGFLNFKSLERLDMGGARNALNASF----LQIIGESM-ASLKHLSLS 380 (394)
Q Consensus 315 ~l~~-----~~~L~~L~l~~n~l~~----~ip~~~~~~~~~L~~L~l~~~~n~l~~g~----l~~~~~~~-~~L~~L~l~ 380 (394)
.+.. .+.|++|++++|.++. .+.. .+..+++|+++++++ |.++ .. +...+... +.|+.+++.
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~-~~~~~~~L~~l~l~~--N~l~-~~~~~~~~~~~~~~~~~~~~~~~~ 315 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAE-VLAEKESLLELDLRG--NKFG-EEGAQLLAESLLEPGNELESLWVK 315 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCCcHHHHHHHH-HHhcCCCccEEECCC--CCCc-HHHHHHHHHHHhhcCCchhhcccC
Confidence 3221 3677777777777752 2223 445557778888887 7776 22 22334444 677777777
Q ss_pred cccc
Q 041570 381 YSIL 384 (394)
Q Consensus 381 ~n~l 384 (394)
+|++
T Consensus 316 ~~~~ 319 (319)
T cd00116 316 DDSF 319 (319)
T ss_pred CCCC
Confidence 7754
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.81 E-value=7.5e-20 Score=167.91 Aligned_cols=261 Identities=25% Similarity=0.235 Sum_probs=169.7
Q ss_pred EeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCcc----chHhhhcCCCCCEEEcCCceeeccccccCCCCCCEEE
Q 041570 105 LILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNS----ISSSLARLSSLISLSLSHNKLEGSIEVKGSSKLQSLD 180 (394)
Q Consensus 105 L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~----~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ 180 (394)
|+|..+.+++.--. ..+..+.+|++|+++++.+++. ++..+...+.|++++++++.+.+...
T Consensus 3 l~L~~~~l~~~~~~---~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~----------- 68 (319)
T cd00116 3 LSLKGELLKTERAT---ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPR----------- 68 (319)
T ss_pred cccccCcccccchH---HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcch-----------
Confidence 45555655533222 2244556688888888877532 45555666777777777766542000
Q ss_pred cCCCCCCcccc---ccCCCCcEEEccCcccCCccChhhhcCC---CCCCEEECCCCCCCCCccc--CcCCCCC-CCcCEE
Q 041570 181 LSHNNLNRIIL---SSLTTLSELYLSGMGFEGTFDVQEFDSL---SNLEELYLSNNKGINNFVV--PQDYRGL-SKLKRL 251 (394)
Q Consensus 181 l~~n~l~~~~~---~~l~~L~~L~l~~~~~~~~~~~~~~~~l---~~L~~L~l~~n~~~~~~~~--~~~~~~l-~~L~~L 251 (394)
.+ ..++ ..+++|++|++++|.+.+..+ ..+..+ ++|++|++++|++...... ...+..+ ++|++|
T Consensus 69 ----~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L 142 (319)
T cd00116 69 ----GL-QSLLQGLTKGCGLQELDLSDNALGPDGC-GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL 142 (319)
T ss_pred ----HH-HHHHHHHHhcCceeEEEccCCCCChhHH-HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEE
Confidence 00 0000 134455555555555543222 333333 4499999998887621111 1234555 899999
Q ss_pred EcCCCCCCCC--hhhhhhcCCCCCCCEEeCcCCCCCcc----chhhcCCCCCCCEEEcCCCcCChh----hhhchhccCC
Q 041570 252 DLSGVGIRDG--SELLRSMGSFPSLKTLFLEANNFTAT----TTQELHNFTNLEFLNLRHSSLDIN----LLKTIASFTS 321 (394)
Q Consensus 252 ~l~~n~~~~~--~~~~~~l~~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~----~~~~l~~~~~ 321 (394)
++++|.+++. ..++..+..+++|++|++++|.+++. ++..+...++|+.|++++|.+++. ++..+..+++
T Consensus 143 ~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~ 222 (319)
T cd00116 143 VLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS 222 (319)
T ss_pred EcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCC
Confidence 9999999843 22455677778999999999999853 344566678999999999999754 3445677899
Q ss_pred CCeEecCCcccceeechhhcc----CCCCCcEEEcCCCCcccCC---ccccccccccCCCcEEecccccccee
Q 041570 322 LKNLSMVSCEVNGVLDGQGFL----NFKSLERLDMGGARNALNA---SFLQIIGESMASLKHLSLSYSILNAN 387 (394)
Q Consensus 322 L~~L~l~~n~l~~~ip~~~~~----~~~~L~~L~l~~~~n~l~~---g~l~~~~~~~~~L~~L~l~~n~l~g~ 387 (394)
|++|++++|.+++........ ..+.|+.|++++ |.+++ +.+...+..+++|+.+++++|.++.+
T Consensus 223 L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~--n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSC--NDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred CCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccC--CCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 999999999988633321112 247999999999 77752 23445666778999999999998854
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=1.2e-19 Score=179.95 Aligned_cols=254 Identities=21% Similarity=0.244 Sum_probs=191.8
Q ss_pred ceeEecCCCCcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCC
Q 041570 62 ESVECSNTTGRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFK 141 (394)
Q Consensus 62 ~gv~c~~~~~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~ 141 (394)
.-..|- ....+.+++++++++..+.. + .++|+.|++++|.++. +|.. + .++|++|++++|.++
T Consensus 171 r~~~Cl--~~~~~~L~L~~~~LtsLP~~-I-------p~~L~~L~Ls~N~Lts-LP~~----l--~~nL~~L~Ls~N~Lt 233 (754)
T PRK15370 171 RMRDCL--KNNKTELRLKILGLTTIPAC-I-------PEQITTLILDNNELKS-LPEN----L--QGNIKTLYANSNQLT 233 (754)
T ss_pred HHHhhc--ccCceEEEeCCCCcCcCCcc-c-------ccCCcEEEecCCCCCc-CChh----h--ccCCCEEECCCCccc
Confidence 334563 34568899998877654431 1 2579999999999985 4432 2 258999999999998
Q ss_pred ccchHhhhcCCCCCEEEcCCceeeccccccCCCCCCEEEcCCCCCCccccc-cCCCCcEEEccCcccCCccChhhhcCCC
Q 041570 142 NSISSSLARLSSLISLSLSHNKLEGSIEVKGSSKLQSLDLSHNNLNRIILS-SLTTLSELYLSGMGFEGTFDVQEFDSLS 220 (394)
Q Consensus 142 ~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 220 (394)
.+|..+. ++|+.|++++|.+.. +|.....+|+.|++++|++.. +|. -.++|+.|++++|.++ .+| ..+ .+
T Consensus 234 -sLP~~l~--~~L~~L~Ls~N~L~~-LP~~l~s~L~~L~Ls~N~L~~-LP~~l~~sL~~L~Ls~N~Lt-~LP-~~l--p~ 304 (754)
T PRK15370 234 -SIPATLP--DTIQEMELSINRITE-LPERLPSALQSLDLFHNKISC-LPENLPEELRYLSVYDNSIR-TLP-AHL--PS 304 (754)
T ss_pred -cCChhhh--ccccEEECcCCccCc-CChhHhCCCCEEECcCCccCc-cccccCCCCcEEECCCCccc-cCc-ccc--hh
Confidence 6776554 479999999999984 663334689999999999985 444 4458999999999988 455 323 24
Q ss_pred CCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCE
Q 041570 221 NLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEF 300 (394)
Q Consensus 221 ~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 300 (394)
+|++|++++|.+. .+|. .+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++. +|..+. ++|+.
T Consensus 305 sL~~L~Ls~N~Lt--~LP~-~l--~~sL~~L~Ls~N~Lt~---LP~~l~--~sL~~L~Ls~N~L~~-LP~~lp--~~L~~ 371 (754)
T PRK15370 305 GITHLNVQSNSLT--ALPE-TL--PPGLKTLEAGENALTS---LPASLP--PELQVLDVSKNQITV-LPETLP--PTITT 371 (754)
T ss_pred hHHHHHhcCCccc--cCCc-cc--cccceeccccCCcccc---CChhhc--CcccEEECCCCCCCc-CChhhc--CCcCE
Confidence 7899999999987 3554 22 3689999999999886 565553 689999999999984 565554 68999
Q ss_pred EEcCCCcCChhhhhchhccCCCCeEecCCcccceeechh---hccCCCCCcEEEcCCCCcccC
Q 041570 301 LNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQ---GFLNFKSLERLDMGGARNALN 360 (394)
Q Consensus 301 L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~---~~~~~~~L~~L~l~~~~n~l~ 360 (394)
|++++|.++ .+|..+. ..|+.|++++|.+. .+|.. .....+.+..+++.+ |.++
T Consensus 372 LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~--Npls 428 (754)
T PRK15370 372 LDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEY--NPFS 428 (754)
T ss_pred EECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeC--CCcc
Confidence 999999998 5666554 36999999999998 66651 233457889999999 8887
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.76 E-value=7e-20 Score=160.92 Aligned_cols=233 Identities=24% Similarity=0.266 Sum_probs=136.6
Q ss_pred ceeEecC---------CCCcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcE
Q 041570 62 ESVECSN---------TTGRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKF 132 (394)
Q Consensus 62 ~gv~c~~---------~~~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~ 132 (394)
..|+|+. .....++|+|..|.++.+ ++..|+.+++|+.|||+.|.|+...|++ |.+++.|..
T Consensus 49 ~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~i-----P~~aF~~l~~LRrLdLS~N~Is~I~p~A----F~GL~~l~~ 119 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLPPETVEIRLDQNQISSI-----PPGAFKTLHRLRRLDLSKNNISFIAPDA----FKGLASLLS 119 (498)
T ss_pred ceEEccCCCcccCcccCCCcceEEEeccCCcccC-----ChhhccchhhhceecccccchhhcChHh----hhhhHhhhH
Confidence 3477763 234678999999988544 4557899999999999999998777764 888888887
Q ss_pred EEccc-ccCCccchH-hhhcCCCCCEEEcCCceeecc-----------------------cc---ccCCCCCCEEEcCCC
Q 041570 133 LDLRM-NLFKNSISS-SLARLSSLISLSLSHNKLEGS-----------------------IE---VKGSSKLQSLDLSHN 184 (394)
Q Consensus 133 L~L~~-n~~~~~~p~-~l~~l~~L~~L~l~~n~l~~~-----------------------~~---~~~~~~L~~L~l~~n 184 (394)
|.+.+ |+|+ .+|+ .|+++..|+.|.+.-|.+.-. ++ +..+.+++.+.+..|
T Consensus 120 Lvlyg~NkI~-~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 120 LVLYGNNKIT-DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred HHhhcCCchh-hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcC
Confidence 77666 7777 3443 455555555555544443221 11 233344444444443
Q ss_pred CCCcc-----------------------ccc--------------cCCCCcEE--Ec-cCcccCCccChhhhcCCCCCCE
Q 041570 185 NLNRI-----------------------ILS--------------SLTTLSEL--YL-SGMGFEGTFDVQEFDSLSNLEE 224 (394)
Q Consensus 185 ~l~~~-----------------------~~~--------------~l~~L~~L--~l-~~~~~~~~~~~~~~~~l~~L~~ 224 (394)
.+... .|. ....++.+ .+ +.+...+..|...|..+++|++
T Consensus 199 p~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~ 278 (498)
T KOG4237|consen 199 PFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRK 278 (498)
T ss_pred ccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceE
Confidence 31110 000 00001111 01 1111222334455666777777
Q ss_pred EECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcC
Q 041570 225 LYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLR 304 (394)
Q Consensus 225 L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 304 (394)
|++++|+++ .+-..+|.+...+++|.|..|++... --..|..+..|+.|+|.+|+++-..|.+|..+..|.+|.+-
T Consensus 279 lnlsnN~i~--~i~~~aFe~~a~l~eL~L~~N~l~~v--~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 279 LNLSNNKIT--RIEDGAFEGAAELQELYLTRNKLEFV--SSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLL 354 (498)
T ss_pred eccCCCccc--hhhhhhhcchhhhhhhhcCcchHHHH--HHHhhhccccceeeeecCCeeEEEecccccccceeeeeehc
Confidence 777777765 44445667777777777777766543 22345566667777777777776666666666666666665
Q ss_pred CCcC
Q 041570 305 HSSL 308 (394)
Q Consensus 305 ~n~l 308 (394)
.|.+
T Consensus 355 ~Np~ 358 (498)
T KOG4237|consen 355 SNPF 358 (498)
T ss_pred cCcc
Confidence 5543
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.73 E-value=1.9e-19 Score=158.28 Aligned_cols=277 Identities=23% Similarity=0.258 Sum_probs=194.5
Q ss_pred CCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCC-ceeecccc---ccCCCC
Q 041570 100 QQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSH-NKLEGSIE---VKGSSK 175 (394)
Q Consensus 100 ~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~-n~l~~~~~---~~~~~~ 175 (394)
+.-.+|+|..|.|+..++.. |+.+++|++|||+.|.|+-.-|..|.++++|.+|.+.+ |.++. +| +.++.+
T Consensus 67 ~~tveirLdqN~I~~iP~~a----F~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~-l~k~~F~gL~s 141 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGA----FKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD-LPKGAFGGLSS 141 (498)
T ss_pred CcceEEEeccCCcccCChhh----ccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh-hhhhHhhhHHH
Confidence 35678999999998665544 89999999999999999988899999999988887776 77776 44 677778
Q ss_pred CCEEEcCCCCCCccccc---cCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCC-ccc---------CcCC
Q 041570 176 LQSLDLSHNNLNRIILS---SLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINN-FVV---------PQDY 242 (394)
Q Consensus 176 L~~L~l~~n~l~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~---------~~~~ 242 (394)
++-|.+.-|++.-.... .++++..|.+..|.+. .++...+..+..++.+.+..|.+... .++ +..+
T Consensus 142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet 220 (498)
T KOG4237|consen 142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET 220 (498)
T ss_pred HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhc
Confidence 88888887777665443 6777777888887776 44434667777777777777663200 000 0112
Q ss_pred CCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEE--eC-cCCCCCccc-hhhcCCCCCCCEEEcCCCcCChhhhhchhc
Q 041570 243 RGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTL--FL-EANNFTATT-TQELHNFTNLEFLNLRHSSLDINLLKTIAS 318 (394)
Q Consensus 243 ~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L--~l-~~n~~~~~~-~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~ 318 (394)
+...-..-..+.+.++... -+..+.. +++.+ .+ +.+...++. ...|..+++|+.|++++|++++.-+.+|..
T Consensus 221 sgarc~~p~rl~~~Ri~q~--~a~kf~c--~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~ 296 (498)
T KOG4237|consen 221 SGARCVSPYRLYYKRINQE--DARKFLC--SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG 296 (498)
T ss_pred ccceecchHHHHHHHhccc--chhhhhh--hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc
Confidence 2222222222223222221 1111111 12222 11 222233333 356888999999999999999888889999
Q ss_pred cCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccccccccccCCCcEEeccccccceeEee
Q 041570 319 FTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLSYSILNANCTI 390 (394)
Q Consensus 319 ~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~l~g~~~~ 390 (394)
...+++|.|..|++. .+....|..+..|+.|+|.+ |+++ -..|..|....+|.+|.+-.|.|.+.|..
T Consensus 297 ~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~--N~it-~~~~~aF~~~~~l~~l~l~~Np~~CnC~l 364 (498)
T KOG4237|consen 297 AAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYD--NQIT-TVAPGAFQTLFSLSTLNLLSNPFNCNCRL 364 (498)
T ss_pred hhhhhhhhcCcchHH-HHHHHhhhccccceeeeecC--CeeE-EEecccccccceeeeeehccCcccCccch
Confidence 999999999999987 56666888999999999999 9998 66778888999999999999999988754
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=4.8e-18 Score=133.13 Aligned_cols=158 Identities=26% Similarity=0.324 Sum_probs=84.0
Q ss_pred CCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCC
Q 041570 219 LSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNL 298 (394)
Q Consensus 219 l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L 298 (394)
+.+.+.|.++.|+++ .+|+ .+..+.+|+.|++.+|+++. +|..++.+++|+.|+++-|++. ..|..|+.++.|
T Consensus 32 ~s~ITrLtLSHNKl~--~vpp-nia~l~nlevln~~nnqie~---lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT--VVPP-NIAELKNLEVLNLSNNQIEE---LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred hhhhhhhhcccCcee--ecCC-cHHHhhhhhhhhcccchhhh---cChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 344444555555554 3343 45555555555555555544 4555555555555555555554 445555555555
Q ss_pred CEEEcCCCcCCh-hhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccccccccccCCCcEE
Q 041570 299 EFLNLRHSSLDI-NLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKHL 377 (394)
Q Consensus 299 ~~L~l~~n~l~~-~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L 377 (394)
+.||+.+|++.. .+|..|..+..|+-|.++.|.|. .+|. .++++++|+.|.+.+ |.+- ++|..++.++.|+.|
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~-dvg~lt~lqil~lrd--ndll--~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPP-DVGKLTNLQILSLRD--NDLL--SLPKEIGDLTRLREL 178 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCCh-hhhhhcceeEEeecc--Cchh--hCcHHHHHHHHHHHH
Confidence 555555555542 34444555555555555555554 4444 455555555555555 5554 555555555555555
Q ss_pred eccccccceeEe
Q 041570 378 SLSYSILNANCT 389 (394)
Q Consensus 378 ~l~~n~l~g~~~ 389 (394)
++.+|.++--.|
T Consensus 179 hiqgnrl~vlpp 190 (264)
T KOG0617|consen 179 HIQGNRLTVLPP 190 (264)
T ss_pred hcccceeeecCh
Confidence 555555544333
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=2.7e-17 Score=128.92 Aligned_cols=165 Identities=27% Similarity=0.358 Sum_probs=105.8
Q ss_pred hcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeecccc-ccCCCCCCEEEcCCCCCCccccccCCCCcEEEc
Q 041570 124 LSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIE-VKGSSKLQSLDLSHNNLNRIILSSLTTLSELYL 202 (394)
Q Consensus 124 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~l~~L~~L~l 202 (394)
+-++.+.+.|.|+.|.++ .+|+.++.+.+|+.|++++|+++...+ +..+++|++|+++.|++.
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~--------------- 92 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN--------------- 92 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh---------------
Confidence 445677788888888887 777788888888888888888876333 566666666666666543
Q ss_pred cCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCC
Q 041570 203 SGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEAN 282 (394)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n 282 (394)
..| ..|+.++.|+.|++.+|++....+| ..|..+..|+.|++++|.|.- +|+.++.+++|+.|.+.+|
T Consensus 93 -------~lp-rgfgs~p~levldltynnl~e~~lp-gnff~m~tlralyl~dndfe~---lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 93 -------ILP-RGFGSFPALEVLDLTYNNLNENSLP-GNFFYMTTLRALYLGDNDFEI---LPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred -------cCc-cccCCCchhhhhhccccccccccCC-cchhHHHHHHHHHhcCCCccc---CChhhhhhcceeEEeeccC
Confidence 233 5566666666666666666533333 355566666666666666543 5566666666666666666
Q ss_pred CCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhc
Q 041570 283 NFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIAS 318 (394)
Q Consensus 283 ~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~ 318 (394)
.+- .+|..++.+..|+.|.+.+|.++ .+|+.+++
T Consensus 161 dll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 161 DLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred chh-hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence 654 44555666666666666666665 44444443
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.49 E-value=2.5e-13 Score=134.34 Aligned_cols=148 Identities=30% Similarity=0.457 Sum_probs=99.4
Q ss_pred CccCHHHHHHHHHhhhhcCCCCCCCCCCCCCCCCC-----ccceeEecCC--C--CcEEEEecCCCCCCCCCCCcccccc
Q 041570 25 EGCLEHERFALLRLRHFFSSPSRLQNWEDEQGDFC-----QWESVECSNT--T--GRVIGLDLSDTRNEDLGEGYLNAFL 95 (394)
Q Consensus 25 ~~~~~~~~~al~~~~~~~~~~~~~~~W~~~~~~~c-----~w~gv~c~~~--~--~~v~~l~l~~~~~~~~~~~~l~~~~ 95 (394)
..+.+.|.+||+.+|.++..+. ..+|.. ++| .|.||.|+.. . .+|+.|+|+++++... ++ ..
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~-~~~W~g---~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~----ip-~~ 437 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPL-RFGWNG---DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGF----IP-ND 437 (623)
T ss_pred cccCchHHHHHHHHHHhcCCcc-cCCCCC---CCCCCcccccccceeeccCCCCceEEEEEECCCCCcccc----CC-HH
Confidence 4567789999999999987653 247853 455 6999999531 1 2477788877766321 21 23
Q ss_pred CCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeecccc--ccC-
Q 041570 96 FTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIE--VKG- 172 (394)
Q Consensus 96 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~--~~~- 172 (394)
+..+++|+.|+|++|.++|.+|.. ++.+++|++|+|++|.++|.+|..++++++|++|++++|.++|.+| +..
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~iP~~----~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGNIPPS----LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513 (623)
T ss_pred HhCCCCCCEEECCCCcccCcCChH----HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhc
Confidence 566777777777777777777654 6777777777777777777777777777777777777777777666 211
Q ss_pred CCCCCEEEcCCCC
Q 041570 173 SSKLQSLDLSHNN 185 (394)
Q Consensus 173 ~~~L~~L~l~~n~ 185 (394)
..++..+++.+|.
T Consensus 514 ~~~~~~l~~~~N~ 526 (623)
T PLN03150 514 LLHRASFNFTDNA 526 (623)
T ss_pred cccCceEEecCCc
Confidence 1334455555543
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.47 E-value=1.5e-14 Score=125.94 Aligned_cols=235 Identities=21% Similarity=0.230 Sum_probs=98.3
Q ss_pred CCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEccccc---CCccchHh-------hhcCCCCCEEEcCCceeecc
Q 041570 98 PFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNL---FKNSISSS-------LARLSSLISLSLSHNKLEGS 167 (394)
Q Consensus 98 ~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~---~~~~~p~~-------l~~l~~L~~L~l~~n~l~~~ 167 (394)
.+..+++++|++|.|.......+...+.+.+.|+..++++-. ....+|.. +..+++|++++||.|.+...
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 344555555555555433333344445555555555555431 11223322 22345566666666555322
Q ss_pred cc------ccCCCCCCEEEcCCCCCCccccc----------------cCCCCcEEEccCcccCCcc---ChhhhcCCCCC
Q 041570 168 IE------VKGSSKLQSLDLSHNNLNRIILS----------------SLTTLSELYLSGMGFEGTF---DVQEFDSLSNL 222 (394)
Q Consensus 168 ~~------~~~~~~L~~L~l~~n~l~~~~~~----------------~l~~L~~L~l~~~~~~~~~---~~~~~~~l~~L 222 (394)
.+ +..+..|++|.+.+|.+.-.... +-++|+++....|++...- ....+...+.|
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 11 23345555555555544322100 2233444444444432110 01223334455
Q ss_pred CEEECCCCCCCCCc--ccCcCCCCCCCcCEEEcCCCCCC--CChhhhhhcCCCCCCCEEeCcCCCCCccchhhc-----C
Q 041570 223 EELYLSNNKGINNF--VVPQDYRGLSKLKRLDLSGVGIR--DGSELLRSMGSFPSLKTLFLEANNFTATTTQEL-----H 293 (394)
Q Consensus 223 ~~L~l~~n~~~~~~--~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l-----~ 293 (394)
+++.+..|.+.... .....+..+++|++|||.+|.|+ |...+...+..+++|++|++++|.+.......| .
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~ 267 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKE 267 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhc
Confidence 55555555443111 11123444555555555555443 211233344444555555555554433222211 1
Q ss_pred CCCCCCEEEcCCCcCChh----hhhchhccCCCCeEecCCccc
Q 041570 294 NFTNLEFLNLRHSSLDIN----LLKTIASFTSLKNLSMVSCEV 332 (394)
Q Consensus 294 ~~~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l 332 (394)
..++|+.+.+.+|.++.. +...+...+.|..|+|++|.+
T Consensus 268 ~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 268 SAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 134555555555554321 111223344455555555544
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.41 E-value=1.1e-13 Score=120.53 Aligned_cols=235 Identities=29% Similarity=0.347 Sum_probs=136.8
Q ss_pred hhhcCCCCCcEEEcccccCCcc----chHhhhcCCCCCEEEcCCceeec----ccc---------ccCCCCCCEEEcCCC
Q 041570 122 EMLSRLSNLKFLDLRMNLFKNS----ISSSLARLSSLISLSLSHNKLEG----SIE---------VKGSSKLQSLDLSHN 184 (394)
Q Consensus 122 ~~l~~l~~L~~L~L~~n~~~~~----~p~~l~~l~~L~~L~l~~n~l~~----~~~---------~~~~~~L~~L~l~~n 184 (394)
..+..+..+++++|++|.+... +.+.+.+.+.|+..+++.-. +| .+| +..+++|++|+||+|
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f-tGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF-TGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh-cCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 3466788999999999998632 44556677889888887532 33 222 345568889999988
Q ss_pred CCCccccc-------cCCCCcEEEccCcccCCccC------------hhhhcCCCCCCEEECCCCCCCCCcc--cCcCCC
Q 041570 185 NLNRIILS-------SLTTLSELYLSGMGFEGTFD------------VQEFDSLSNLEELYLSNNKGINNFV--VPQDYR 243 (394)
Q Consensus 185 ~l~~~~~~-------~l~~L~~L~l~~~~~~~~~~------------~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~ 243 (394)
-+.-..+. ++..|++|.+.+|++...-. ....+.-++|+.+..++|++.++.. ....|.
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ 182 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence 87665443 67788888888887652110 1123344566666666666653221 112345
Q ss_pred CCCCcCEEEcCCCCCC--CChhhhhhcCCCCCCCEEeCcCCCCCcc----chhhcCCCCCCCEEEcCCCcCChhhhh---
Q 041570 244 GLSKLKRLDLSGVGIR--DGSELLRSMGSFPSLKTLFLEANNFTAT----TTQELHNFTNLEFLNLRHSSLDINLLK--- 314 (394)
Q Consensus 244 ~l~~L~~L~l~~n~~~--~~~~~~~~l~~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~--- 314 (394)
..+.|+.+.++.|.+. |...+...+..+++|+.|||.+|.++.. +...++.+++|+.+++++|.+...-..
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence 5566666666666553 3222445556666666666666666532 234455556666666666666432222
Q ss_pred -ch-hccCCCCeEecCCccccee---echhhccCCCCCcEEEcCCCCccc
Q 041570 315 -TI-ASFTSLKNLSMVSCEVNGV---LDGQGFLNFKSLERLDMGGARNAL 359 (394)
Q Consensus 315 -~l-~~~~~L~~L~l~~n~l~~~---ip~~~~~~~~~L~~L~l~~~~n~l 359 (394)
.+ ...|+|+.+.+.+|.++.. +....+...+.|..|+|++ |.+
T Consensus 263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng--N~l 310 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG--NRL 310 (382)
T ss_pred HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc--ccc
Confidence 22 2345666666666665421 1111233445666666666 555
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.28 E-value=6.2e-12 Score=118.88 Aligned_cols=186 Identities=31% Similarity=0.405 Sum_probs=84.4
Q ss_pred EEEcCCceeec-cccccCCCCCCEEEcCCCCCCccccc--cCC-CCcEEEccCcccCCccChhhhcCCCCCCEEECCCCC
Q 041570 156 SLSLSHNKLEG-SIEVKGSSKLQSLDLSHNNLNRIILS--SLT-TLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNK 231 (394)
Q Consensus 156 ~L~l~~n~l~~-~~~~~~~~~L~~L~l~~n~l~~~~~~--~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 231 (394)
.+++..+.+.. ..+....+.++.+++.+|.++...+. ... +|+.|+++.|.+. .++ ..++.+++|+.|+++.|+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~-~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLP-SPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhh-hhhhccccccccccCCch
Confidence 46666666532 22244445566666666665554433 221 4555555555544 222 234455555555555555
Q ss_pred CCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChh
Q 041570 232 GINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDIN 311 (394)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~ 311 (394)
+. .++. .....++|+.|++++|.+.. +|........|+++.+++|+.. ..+..+..+.++..+.+.+|++. .
T Consensus 175 l~--~l~~-~~~~~~~L~~L~ls~N~i~~---l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~ 246 (394)
T COG4886 175 LS--DLPK-LLSNLSNLNNLDLSGNKISD---LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-D 246 (394)
T ss_pred hh--hhhh-hhhhhhhhhheeccCCcccc---CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-e
Confidence 44 2332 22244455555555555543 3333333334555555555322 12233444444444444444443 1
Q ss_pred hhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCC
Q 041570 312 LLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGG 354 (394)
Q Consensus 312 ~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~ 354 (394)
++..++.++++++|++++|.++ .++. +....+++.|++++
T Consensus 247 ~~~~~~~l~~l~~L~~s~n~i~-~i~~--~~~~~~l~~L~~s~ 286 (394)
T COG4886 247 LPESIGNLSNLETLDLSNNQIS-SISS--LGSLTNLRELDLSG 286 (394)
T ss_pred ccchhccccccceecccccccc-cccc--ccccCccCEEeccC
Confidence 2333444444555555544444 3332 33444445555544
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=8.6e-13 Score=118.21 Aligned_cols=211 Identities=26% Similarity=0.316 Sum_probs=91.3
Q ss_pred hcCCCCCEEEcCCceeeccc---cccCCCCCCEEEcCCCCCCccccccCCCCcEEEccCcccCCccChhhhcCCCCCCEE
Q 041570 149 ARLSSLISLSLSHNKLEGSI---EVKGSSKLQSLDLSHNNLNRIILSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEEL 225 (394)
Q Consensus 149 ~~l~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 225 (394)
+++.+|+.+.|.++...... -...+++++.|+++.|-+....+. ......+++|+.|
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v--------------------~~i~eqLp~Le~L 177 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPV--------------------LKIAEQLPSLENL 177 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHH--------------------HHHHHhcccchhc
Confidence 45667777777666554321 133445555555555544433111 0222344555555
Q ss_pred ECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCC
Q 041570 226 YLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRH 305 (394)
Q Consensus 226 ~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 305 (394)
+++.|++. .......-..++.|+.|.++.|.++- .++...+..+|+|+.|++.+|.....-.....-+..|+.|||++
T Consensus 178 Nls~Nrl~-~~~~s~~~~~l~~lK~L~l~~CGls~-k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~ 255 (505)
T KOG3207|consen 178 NLSSNRLS-NFISSNTTLLLSHLKQLVLNSCGLSW-KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSN 255 (505)
T ss_pred cccccccc-CCccccchhhhhhhheEEeccCCCCH-HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccC
Confidence 55555444 11111122234445555555555541 12333334455555555555532111111122234555555555
Q ss_pred CcCChhh-hhchhccCCCCeEecCCcccce-eech----hhccCCCCCcEEEcCCCCcccCCcccc--ccccccCCCcEE
Q 041570 306 SSLDINL-LKTIASFTSLKNLSMVSCEVNG-VLDG----QGFLNFKSLERLDMGGARNALNASFLQ--IIGESMASLKHL 377 (394)
Q Consensus 306 n~l~~~~-~~~l~~~~~L~~L~l~~n~l~~-~ip~----~~~~~~~~L~~L~l~~~~n~l~~g~l~--~~~~~~~~L~~L 377 (394)
|++...- -...+.++.|+.|+++.+.+.. .+|+ .....+++|++|++.. |.+. ..+ ..+..+++|+.|
T Consensus 256 N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~--N~I~--~w~sl~~l~~l~nlk~l 331 (505)
T KOG3207|consen 256 NNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE--NNIR--DWRSLNHLRTLENLKHL 331 (505)
T ss_pred CcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc--Cccc--cccccchhhccchhhhh
Confidence 5543211 1223445555555555554431 1111 0123445555555555 5554 222 333444455555
Q ss_pred eccccccc
Q 041570 378 SLSYSILN 385 (394)
Q Consensus 378 ~l~~n~l~ 385 (394)
.+..|.|+
T Consensus 332 ~~~~n~ln 339 (505)
T KOG3207|consen 332 RITLNYLN 339 (505)
T ss_pred hccccccc
Confidence 54444443
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.27 E-value=8.8e-13 Score=112.79 Aligned_cols=133 Identities=25% Similarity=0.340 Sum_probs=76.5
Q ss_pred CCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCC
Q 041570 243 RGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSL 322 (394)
Q Consensus 243 ~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L 322 (394)
.....|+++|+++|.++. +.+.+.-.|.++.|++++|.+..+ ..++.+++|+.||+++|.++ .+..+-.++-++
T Consensus 281 dTWq~LtelDLS~N~I~~---iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQ---IDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI 354 (490)
T ss_pred chHhhhhhccccccchhh---hhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCE
Confidence 344456666666666554 344555556666666666666543 22555666666666666665 333333445566
Q ss_pred CeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCcccc--ccccccCCCcEEeccccccceeE
Q 041570 323 KNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQ--IIGESMASLKHLSLSYSILNANC 388 (394)
Q Consensus 323 ~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~--~~~~~~~~L~~L~l~~n~l~g~~ 388 (394)
+.|.++.|.+. .+. .+.++-+|..||+++ |++. .+. ..++++|.|+.+.+.+|.+.+.+
T Consensus 355 KtL~La~N~iE-~LS--GL~KLYSLvnLDl~~--N~Ie--~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 355 KTLKLAQNKIE-TLS--GLRKLYSLVNLDLSS--NQIE--ELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred eeeehhhhhHh-hhh--hhHhhhhheeccccc--cchh--hHHHhcccccccHHHHHhhcCCCccccc
Confidence 66666666554 332 245556666666666 6665 333 45666666666666666666543
No 29
>PLN03150 hypothetical protein; Provisional
Probab=99.26 E-value=8.4e-12 Score=123.63 Aligned_cols=112 Identities=18% Similarity=0.232 Sum_probs=89.6
Q ss_pred CCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcC
Q 041570 274 LKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMG 353 (394)
Q Consensus 274 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~ 353 (394)
++.|+|++|.+.|.+|..+..+++|+.|+|++|.++|.+|..++.+++|+.|++++|.++|.+|. .+.++++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~-~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch-HHhcCCCCCEEECc
Confidence 66788888888888888888888888888888888888888888888888888888888888887 77888888888888
Q ss_pred CCCcccCCcccccccccc-CCCcEEeccccccceeEe
Q 041570 354 GARNALNASFLQIIGESM-ASLKHLSLSYSILNANCT 389 (394)
Q Consensus 354 ~~~n~l~~g~l~~~~~~~-~~L~~L~l~~n~l~g~~~ 389 (394)
+ |.++ |.+|..+... .++..+++.+|...|.+|
T Consensus 499 ~--N~l~-g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 G--NSLS-GRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred C--Cccc-ccCChHHhhccccCceEEecCCccccCCC
Confidence 8 8888 8888776543 466778888886555544
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.26 E-value=8e-12 Score=118.10 Aligned_cols=195 Identities=35% Similarity=0.437 Sum_probs=118.9
Q ss_pred EEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCC-CCCEEEcCCceeecc-ccccCCCCCCEEEc
Q 041570 104 SLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLS-SLISLSLSHNKLEGS-IEVKGSSKLQSLDL 181 (394)
Q Consensus 104 ~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~-~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l 181 (394)
.+++..+.+...... +..++.++.|++.+|.++ .++....... +|+.|++++|.+... .+...+++|+.|++
T Consensus 97 ~l~~~~~~~~~~~~~-----~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l 170 (394)
T COG4886 97 SLDLNLNRLRSNISE-----LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDL 170 (394)
T ss_pred eeeccccccccCchh-----hhcccceeEEecCCcccc-cCccccccchhhcccccccccchhhhhhhhhcccccccccc
Confidence 455555555333222 444566777777777766 5555555553 677777777777653 24666677777777
Q ss_pred CCCCCCccccc--cCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCC
Q 041570 182 SHNNLNRIILS--SLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIR 259 (394)
Q Consensus 182 ~~n~l~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 259 (394)
+.|++....+. ..++|+.|++++|.+. .+| ........|+++.+++|... ..+. .+..+.++..+.+.+|++.
T Consensus 171 ~~N~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~-~~~~~~~~L~~l~~~~N~~~--~~~~-~~~~~~~l~~l~l~~n~~~ 245 (394)
T COG4886 171 SFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLP-PEIELLSALEELDLSNNSII--ELLS-SLSNLKNLSGLELSNNKLE 245 (394)
T ss_pred CCchhhhhhhhhhhhhhhhheeccCCccc-cCc-hhhhhhhhhhhhhhcCCcce--ecch-hhhhcccccccccCCceee
Confidence 77777666554 6667777777777666 444 33344455777777777432 2222 4566666666666666665
Q ss_pred CChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhh
Q 041570 260 DGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLK 314 (394)
Q Consensus 260 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~ 314 (394)
. ++..+..++++++|++++|.++...+ ++...+++.|++++|.+....+.
T Consensus 246 ~---~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 246 D---LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred e---ccchhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 4 24455666667777777777664433 66667777777777766654443
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.5e-12 Score=116.74 Aligned_cols=205 Identities=25% Similarity=0.334 Sum_probs=112.2
Q ss_pred cCCCCCcEEEcccccCCccch--HhhhcCCCCCEEEcCCceeecccc----ccCCCCCCEEEcCCCCCCccccc----cC
Q 041570 125 SRLSNLKFLDLRMNLFKNSIS--SSLARLSSLISLSLSHNKLEGSIE----VKGSSKLQSLDLSHNNLNRIILS----SL 194 (394)
Q Consensus 125 ~~l~~L~~L~L~~n~~~~~~p--~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~~~~----~l 194 (394)
+++++|+.+.|.++.+. ..+ .....|++++.|||++|-+..-.+ ...+++|+.|+++.|.+...... .+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 45566666666666554 222 234456666666666665544222 34456666666666665443222 55
Q ss_pred CCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCC
Q 041570 195 TTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSL 274 (394)
Q Consensus 195 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L 274 (394)
+.|+.|.++.|+++-.........+|+|+.|++..|... .+.......++.|+.|+|++|.+.....+ ...+.++.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~--~~~~~~~~i~~~L~~LdLs~N~li~~~~~-~~~~~l~~L 273 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII--LIKATSTKILQTLQELDLSNNNLIDFDQG-YKVGTLPGL 273 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc--ceecchhhhhhHHhhccccCCcccccccc-cccccccch
Confidence 666777777776652221123445677777777776422 12222344555677777777766542111 345566677
Q ss_pred CEEeCcCCCCCcc-chhh-----cCCCCCCCEEEcCCCcCCh-hhhhchhccCCCCeEecCCcccc
Q 041570 275 KTLFLEANNFTAT-TTQE-----LHNFTNLEFLNLRHSSLDI-NLLKTIASFTSLKNLSMVSCEVN 333 (394)
Q Consensus 275 ~~L~l~~n~~~~~-~~~~-----l~~~~~L~~L~l~~n~l~~-~~~~~l~~~~~L~~L~l~~n~l~ 333 (394)
..|.++.+.++.. .|+. ...+++|++|++..|++.. .....+..+++|+.|.+..|.++
T Consensus 274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 7777777666543 1221 2345677777777777642 12233455566666666666654
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.22 E-value=2.9e-13 Score=124.96 Aligned_cols=192 Identities=23% Similarity=0.259 Sum_probs=129.2
Q ss_pred CCCCEEEcCCCCCCccccc--cCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEE
Q 041570 174 SKLQSLDLSHNNLNRIILS--SLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRL 251 (394)
Q Consensus 174 ~~L~~L~l~~n~l~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L 251 (394)
..-...|++.|++...... .+..|+.+.++.|.+. .+| ..+.++..|++++++.|++. ..|. .++.+ -|+.|
T Consensus 75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip-~~i~~L~~lt~l~ls~NqlS--~lp~-~lC~l-pLkvl 148 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIP-EAICNLEALTFLDLSSNQLS--HLPD-GLCDL-PLKVL 148 (722)
T ss_pred cchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecc-hhhhhhhHHHHhhhccchhh--cCCh-hhhcC-cceeE
Confidence 3444567777777665433 4556777777777766 555 66777778888888888775 3443 44444 47777
Q ss_pred EcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcc
Q 041570 252 DLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCE 331 (394)
Q Consensus 252 ~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~ 331 (394)
.+++|+++. +|+.++..+.|..||.+.|++. .+|..++++.+|+.|.+..|.+. .+|+.+..+ .|..||++.|+
T Consensus 149 i~sNNkl~~---lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNk 222 (722)
T KOG0532|consen 149 IVSNNKLTS---LPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNK 222 (722)
T ss_pred EEecCcccc---CCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCc
Confidence 788877765 5667777777777888887776 45566777777777777777776 456666644 37777887777
Q ss_pred cceeechhhccCCCCCcEEEcCCCCcccCCcccccccc---ccCCCcEEeccccc
Q 041570 332 VNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGE---SMASLKHLSLSYSI 383 (394)
Q Consensus 332 l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~---~~~~L~~L~l~~n~ 383 (394)
+. .||. .|.++..|++|-|.+ |.+. .-|..++ ...-.++|+..-|+
T Consensus 223 is-~iPv-~fr~m~~Lq~l~Len--NPLq--SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 223 IS-YLPV-DFRKMRHLQVLQLEN--NPLQ--SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ee-ecch-hhhhhhhheeeeecc--CCCC--CChHHHHhccceeeeeeecchhcc
Confidence 77 7777 677777788887777 7776 4454433 33344666666554
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.21 E-value=1.5e-11 Score=100.41 Aligned_cols=126 Identities=29% Similarity=0.298 Sum_probs=32.2
Q ss_pred CCCCCCEEECCCCCCCCCcccCcCCC-CCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCC
Q 041570 218 SLSNLEELYLSNNKGINNFVVPQDYR-GLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFT 296 (394)
Q Consensus 218 ~l~~L~~L~l~~n~~~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~ 296 (394)
+..++++|++.+|.+. .+. .++ .+.+|+.|++++|.++.. +.+..++.|++|++++|+++...+.....++
T Consensus 17 n~~~~~~L~L~~n~I~--~Ie--~L~~~l~~L~~L~Ls~N~I~~l----~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp 88 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS--TIE--NLGATLDKLEVLDLSNNQITKL----EGLPGLPRLKTLDLSNNRISSISEGLDKNLP 88 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S------TT----TT--EEE--SS---S-CHHHHHH-T
T ss_pred cccccccccccccccc--ccc--chhhhhcCCCEEECCCCCCccc----cCccChhhhhhcccCCCCCCccccchHHhCC
Confidence 3334555666665554 121 233 345555666666655542 1234455566666666655543221112345
Q ss_pred CCCEEEcCCCcCCh-hhhhchhccCCCCeEecCCcccceeech---hhccCCCCCcEEEc
Q 041570 297 NLEFLNLRHSSLDI-NLLKTIASFTSLKNLSMVSCEVNGVLDG---QGFLNFKSLERLDM 352 (394)
Q Consensus 297 ~L~~L~l~~n~l~~-~~~~~l~~~~~L~~L~l~~n~l~~~ip~---~~~~~~~~L~~L~l 352 (394)
+|+.|++++|++.. .-...+..+++|+.|++.+|.+... +. ..+..+|+|+.||-
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 55666666555542 1123344555555555555555422 21 23344555555553
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.12 E-value=1.8e-12 Score=119.81 Aligned_cols=186 Identities=25% Similarity=0.298 Sum_probs=107.5
Q ss_pred EEcccccCCccchHhhhcCCCCCEEEcCCceeeccc-cccCCCCCCEEEcCCCCCCccccc-cCCCCcEEEccCcccCCc
Q 041570 133 LDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSI-EVKGSSKLQSLDLSHNNLNRIILS-SLTTLSELYLSGMGFEGT 210 (394)
Q Consensus 133 L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~~n~l~~~~~~-~l~~L~~L~l~~~~~~~~ 210 (394)
.|++.|.+. .+|..++.+-.|+.+.++.|.+.... ++..+..|++++++.|+++..... -.--|+.|-+++|+++ .
T Consensus 80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~-~ 157 (722)
T KOG0532|consen 80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLT-S 157 (722)
T ss_pred hhccccccc-cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccc-c
Confidence 344444443 44444444444444444444443311 133334444444444444433222 1123566666666665 4
Q ss_pred cChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchh
Q 041570 211 FDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQ 290 (394)
Q Consensus 211 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 290 (394)
+| ..++....|..|+.+.|.+. .+|+ .++++.+|+.|.++.|++.. +|+.+..++ |..||++.|+++ .+|.
T Consensus 158 lp-~~ig~~~tl~~ld~s~nei~--slps-ql~~l~slr~l~vrRn~l~~---lp~El~~Lp-Li~lDfScNkis-~iPv 228 (722)
T KOG0532|consen 158 LP-EEIGLLPTLAHLDVSKNEIQ--SLPS-QLGYLTSLRDLNVRRNHLED---LPEELCSLP-LIRLDFSCNKIS-YLPV 228 (722)
T ss_pred CC-cccccchhHHHhhhhhhhhh--hchH-HhhhHHHHHHHHHhhhhhhh---CCHHHhCCc-eeeeecccCcee-ecch
Confidence 55 56667777777777777765 4555 67777777777777777765 566666553 777888888776 5667
Q ss_pred hcCCCCCCCEEEcCCCcCChhhhhchh---ccCCCCeEecCCc
Q 041570 291 ELHNFTNLEFLNLRHSSLDINLLKTIA---SFTSLKNLSMVSC 330 (394)
Q Consensus 291 ~l~~~~~L~~L~l~~n~l~~~~~~~l~---~~~~L~~L~l~~n 330 (394)
.|.+++.|++|-|.+|.++ ..|..+. ...-.++|+...|
T Consensus 229 ~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 229 DFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 7777888888888888777 4444442 2233456666555
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.11 E-value=7.7e-11 Score=96.35 Aligned_cols=126 Identities=21% Similarity=0.340 Sum_probs=32.1
Q ss_pred CCCCCCcCEEEcCCCCCCCChhhhhhcC-CCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhch-hcc
Q 041570 242 YRGLSKLKRLDLSGVGIRDGSELLRSMG-SFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTI-ASF 319 (394)
Q Consensus 242 ~~~l~~L~~L~l~~n~~~~~~~~~~~l~-~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l-~~~ 319 (394)
+.++.++++|+|++|.++.. +.++ .+.+|+.|++++|.++.. +.+..++.|++|++++|.++. +.+.+ ..+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I----e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~l 87 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI----ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNL 87 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-
T ss_pred cccccccccccccccccccc----cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhC
Confidence 33444555666666655532 1233 345556666666655533 234455566666666666552 22222 235
Q ss_pred CCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCcccc----ccccccCCCcEEe
Q 041570 320 TSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQ----IIGESMASLKHLS 378 (394)
Q Consensus 320 ~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~----~~~~~~~~L~~L~ 378 (394)
++|++|++++|.+...-.-..+..+++|+.|++.+ |.+. .-+ ..+..+|+|+.||
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~--NPv~--~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEG--NPVC--EKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT---GGG--GSTTHHHHHHHH-TT-SEET
T ss_pred CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccC--Cccc--chhhHHHHHHHHcChhheeC
Confidence 55666666666554211112344555566666665 5554 112 2344555555555
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=1.2e-10 Score=99.92 Aligned_cols=18 Identities=17% Similarity=0.362 Sum_probs=7.5
Q ss_pred hhccCCCCeEecCCcccc
Q 041570 316 IASFTSLKNLSMVSCEVN 333 (394)
Q Consensus 316 l~~~~~L~~L~l~~n~l~ 333 (394)
++++|.|+.+.+.+|.+.
T Consensus 395 IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 395 IGNLPCLETLRLTGNPLA 412 (490)
T ss_pred cccccHHHHHhhcCCCcc
Confidence 344444444444444433
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=6.3e-11 Score=101.44 Aligned_cols=196 Identities=24% Similarity=0.268 Sum_probs=140.7
Q ss_pred CCCCEEEcCCCCCCccc----cccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcC
Q 041570 174 SKLQSLDLSHNNLNRII----LSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLK 249 (394)
Q Consensus 174 ~~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~ 249 (394)
+.|+++|++...++-.. ...+.+|+.|.+.++.+...+. ..+++-.+|+.++++.+.-.+.....-.+.+++.|.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~-~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV-NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH-HHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 56999999998887652 3488999999999999988776 778889999999999876321222223578899999
Q ss_pred EEEcCCCCCCCChhhhhhcCC-CCCCCEEeCcCCCCC---ccchhhcCCCCCCCEEEcCCC-cCChhhhhchhccCCCCe
Q 041570 250 RLDLSGVGIRDGSELLRSMGS-FPSLKTLFLEANNFT---ATTTQELHNFTNLEFLNLRHS-SLDINLLKTIASFTSLKN 324 (394)
Q Consensus 250 ~L~l~~n~~~~~~~~~~~l~~-~~~L~~L~l~~n~~~---~~~~~~l~~~~~L~~L~l~~n-~l~~~~~~~l~~~~~L~~ 324 (394)
+|+++.|.++... +.-.+.. -++|+.|+++++.-. ..+..-...+++|..|||++| .++......|.+++.|++
T Consensus 264 ~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 264 ELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred hcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 9999999886542 2112222 257999999998421 123333467899999999986 567677778889999999
Q ss_pred EecCCcccceeech--hhccCCCCCcEEEcCCCCcccCCccccccccccCCCcE
Q 041570 325 LSMVSCEVNGVLDG--QGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKH 376 (394)
Q Consensus 325 L~l~~n~l~~~ip~--~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~ 376 (394)
|.++.|... +|. ..+...|+|.+||+.+|. +++.+.-....+++|+.
T Consensus 343 lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v---sdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 343 LSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV---SDTTMELLKEMLSHLKI 391 (419)
T ss_pred eehhhhcCC--ChHHeeeeccCcceEEEEecccc---CchHHHHHHHhCccccc
Confidence 999999643 343 246778999999998853 22444444445565543
No 38
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.86 E-value=8.8e-10 Score=93.34 Aligned_cols=88 Identities=24% Similarity=0.359 Sum_probs=47.3
Q ss_pred CCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccC---CccchH-------hhhcCCCCCEEEcCCceeeccc
Q 041570 99 FQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLF---KNSISS-------SLARLSSLISLSLSHNKLEGSI 168 (394)
Q Consensus 99 l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~---~~~~p~-------~l~~l~~L~~L~l~~n~l~~~~ 168 (394)
+..+..++||+|.|.......+.+.+.+-++|+..+++.-.. ...++. .+-+||+|+..+||.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 455666666666665444444445555556666666654321 122222 3345666666666666665433
Q ss_pred c------ccCCCCCCEEEcCCCCC
Q 041570 169 E------VKGSSKLQSLDLSHNNL 186 (394)
Q Consensus 169 ~------~~~~~~L~~L~l~~n~l 186 (394)
| +.....|++|.+++|.+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCC
Confidence 3 33445666666666654
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.86 E-value=1.8e-09 Score=72.55 Aligned_cols=58 Identities=24% Similarity=0.365 Sum_probs=25.3
Q ss_pred CCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCc
Q 041570 273 SLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSC 330 (394)
Q Consensus 273 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n 330 (394)
+|++|++++|+++...+..|..+++|++|++++|.++...+..|..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444444444444333344444444444444444444333334444444444444444
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.86 E-value=1.6e-10 Score=109.53 Aligned_cols=242 Identities=26% Similarity=0.266 Sum_probs=130.6
Q ss_pred CCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeeccccccCCCCCC
Q 041570 98 PFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIEVKGSSKLQ 177 (394)
Q Consensus 98 ~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~ 177 (394)
.+..++.+.+..|.+.... ..+..++.|++|++.+|.+. .+...+..+++|++|++++|.++...++..++.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~~~-----~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~ 143 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKIL-----NHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLK 143 (414)
T ss_pred HhHhHHhhccchhhhhhhh-----cccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccchhhccchh
Confidence 3555666666666655311 12566677777777777776 33322566777777777777777766666666677
Q ss_pred EEEcCCCCCCccccc-cCCCCcEEEccCcccCCccChhh-hcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCC
Q 041570 178 SLDLSHNNLNRIILS-SLTTLSELYLSGMGFEGTFDVQE-FDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSG 255 (394)
Q Consensus 178 ~L~l~~n~l~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~ 255 (394)
.|++++|.+....-- .++.|+.+++++|.+.. +. .. ...+.+++.+++.+|.+. .+ ..+..+..+..+++..
T Consensus 144 ~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~-ie-~~~~~~~~~l~~l~l~~n~i~--~i--~~~~~~~~l~~~~l~~ 217 (414)
T KOG0531|consen 144 ELNLSGNLISDISGLESLKSLKLLDLSYNRIVD-IE-NDELSELISLEELDLGGNSIR--EI--EGLDLLKKLVLLSLLD 217 (414)
T ss_pred hheeccCcchhccCCccchhhhcccCCcchhhh-hh-hhhhhhccchHHHhccCCchh--cc--cchHHHHHHHHhhccc
Confidence 777777776654322 46666777777766652 22 11 355666666666666654 11 1233334444446666
Q ss_pred CCCCCChhhhhhcCCCC--CCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccc
Q 041570 256 VGIRDGSELLRSMGSFP--SLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVN 333 (394)
Q Consensus 256 n~~~~~~~~~~~l~~~~--~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 333 (394)
|.++... .+..+. +|+.+++++|.+... +..+..+..+..+++.+|.+...- .+...+.+..+....+.+.
T Consensus 218 n~i~~~~----~l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 218 NKISKLE----GLNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLA 290 (414)
T ss_pred ccceecc----CcccchhHHHHHHhcccCccccc-cccccccccccccchhhccccccc--cccccchHHHhccCcchhc
Confidence 6554321 111222 266677777766532 133455566666666666654211 1223334444445444433
Q ss_pred ee---echhhccCCCCCcEEEcCCCCcccC
Q 041570 334 GV---LDGQGFLNFKSLERLDMGGARNALN 360 (394)
Q Consensus 334 ~~---ip~~~~~~~~~L~~L~l~~~~n~l~ 360 (394)
.. .........+.++.+.+.. |...
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 318 (414)
T KOG0531|consen 291 LSEAISQEYITSAAPTLVTLTLEL--NPIR 318 (414)
T ss_pred chhhhhcccccccccccccccccc--Cccc
Confidence 11 1111134445566666666 5444
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.83 E-value=3.4e-10 Score=107.32 Aligned_cols=191 Identities=30% Similarity=0.365 Sum_probs=81.8
Q ss_pred CCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeecccc-ccCCCCCCEEEcCCCCCCccccc-cCCCCcEEEccCcc
Q 041570 129 NLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIE-VKGSSKLQSLDLSHNNLNRIILS-SLTTLSELYLSGMG 206 (394)
Q Consensus 129 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~~-~l~~L~~L~l~~~~ 206 (394)
.++.+.+..|.+. .+-..+..+.+|+.|++..|.+..... ...+.+|++|++++|.++...+- .++.|+.|++++|.
T Consensus 73 ~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 73 SLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNL 151 (414)
T ss_pred hHHhhccchhhhh-hhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCc
Confidence 3334444444443 222224444555555555555554333 34445555555555555544322 44445555555555
Q ss_pred cCCccChhhhcCCCCCCEEECCCCCCCCCcccC-cCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCC
Q 041570 207 FEGTFDVQEFDSLSNLEELYLSNNKGINNFVVP-QDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFT 285 (394)
Q Consensus 207 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 285 (394)
+... ..+..++.|+.+++++|++. .+.. . ...+.+++.+++.+|.+... ..+..+..+..+++..|.++
T Consensus 152 i~~~---~~~~~l~~L~~l~l~~n~i~--~ie~~~-~~~~~~l~~l~l~~n~i~~i----~~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 152 ISDI---SGLESLKSLKLLDLSYNRIV--DIENDE-LSELISLEELDLGGNSIREI----EGLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred chhc---cCCccchhhhcccCCcchhh--hhhhhh-hhhccchHHHhccCCchhcc----cchHHHHHHHHhhcccccce
Confidence 4421 22333455555555555543 1111 0 24444555555555544322 11222223333344444443
Q ss_pred ccchhhcCCCC--CCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccc
Q 041570 286 ATTTQELHNFT--NLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVN 333 (394)
Q Consensus 286 ~~~~~~l~~~~--~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 333 (394)
..-+ +..+. .|+.+++++|.+. ..+..+..+..+..+++.+|.+.
T Consensus 222 ~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 222 KLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred eccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence 2211 11111 1455555555554 12133344445555555555443
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.80 E-value=3.3e-09 Score=107.82 Aligned_cols=81 Identities=27% Similarity=0.265 Sum_probs=39.9
Q ss_pred hcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeecccc--ccCCCCCCEEEcCCCCCCccccc---cCCCCc
Q 041570 124 LSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIE--VKGSSKLQSLDLSHNNLNRIILS---SLTTLS 198 (394)
Q Consensus 124 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~---~l~~L~ 198 (394)
|..++.|++|||++|.--+.+|..++++-+|++|+++++.+.. +| +..+..|.+|++..+.....++. .+++|+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH-LPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc-cchHHHHHHhhheeccccccccccccchhhhccccc
Confidence 4445555555555554434555555555555555555555543 23 44445555555554443332222 355555
Q ss_pred EEEccCc
Q 041570 199 ELYLSGM 205 (394)
Q Consensus 199 ~L~l~~~ 205 (394)
+|.+...
T Consensus 646 ~L~l~~s 652 (889)
T KOG4658|consen 646 VLRLPRS 652 (889)
T ss_pred EEEeecc
Confidence 5555443
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=3.4e-10 Score=97.04 Aligned_cols=179 Identities=21% Similarity=0.161 Sum_probs=130.5
Q ss_pred CCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCC-CCCCChhhhhhcCCCCC
Q 041570 195 TTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGV-GIRDGSELLRSMGSFPS 273 (394)
Q Consensus 195 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~l~~~~~ 273 (394)
+.|+++|++...++-...-..++.+.+|+.|.+.++++. ..+.. .+..-.+|+.++++.+ .++.. .+--.+..++.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld-D~I~~-~iAkN~~L~~lnlsm~sG~t~n-~~~ll~~scs~ 261 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD-DPIVN-TIAKNSNLVRLNLSMCSGFTEN-ALQLLLSSCSR 261 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC-cHHHH-HHhccccceeeccccccccchh-HHHHHHHhhhh
Confidence 469999999987764433245688899999999999988 55554 6777889999999997 44432 13445678999
Q ss_pred CCEEeCcCCCCCccchh-hcCC-CCCCCEEEcCCCc--C-ChhhhhchhccCCCCeEecCCcc-cceeechhhccCCCCC
Q 041570 274 LKTLFLEANNFTATTTQ-ELHN-FTNLEFLNLRHSS--L-DINLLKTIASFTSLKNLSMVSCE-VNGVLDGQGFLNFKSL 347 (394)
Q Consensus 274 L~~L~l~~n~~~~~~~~-~l~~-~~~L~~L~l~~n~--l-~~~~~~~l~~~~~L~~L~l~~n~-l~~~ip~~~~~~~~~L 347 (394)
|++|+++.|.++..... .+.+ -++|+.|+++++. + ...+..--..+++|.+|||+.|. ++...-. .+.+++.|
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~-~~~kf~~L 340 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFKFNYL 340 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH-HHHhcchh
Confidence 99999999987643322 2222 2689999999863 2 22333334789999999999984 4433333 67789999
Q ss_pred cEEEcCCCCcccCCcccc---ccccccCCCcEEecccc
Q 041570 348 ERLDMGGARNALNASFLQ---IIGESMASLKHLSLSYS 382 (394)
Q Consensus 348 ~~L~l~~~~n~l~~g~l~---~~~~~~~~L~~L~l~~n 382 (394)
++|.++.|. +.+| -.+...|+|.+||+.++
T Consensus 341 ~~lSlsRCY-----~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 341 QHLSLSRCY-----DIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeehhhhc-----CCChHHeeeeccCcceEEEEeccc
Confidence 999999984 4445 45678899999999876
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=8e-09 Score=69.43 Aligned_cols=59 Identities=25% Similarity=0.354 Sum_probs=30.4
Q ss_pred CCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccccccccccCCCcEEeccccc
Q 041570 321 SLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLSYSI 383 (394)
Q Consensus 321 ~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~ 383 (394)
+|++|++++|.++ .+|...+..+++|++|++++ |.++ ..-|..|..+++|+.|++++|+
T Consensus 2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~--N~l~-~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSN--NNLT-SIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTES-EECTTTTTTGTTESEEEETS--SSES-EEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccC--CccC-ccCHHHHcCCCCCCEEeCcCCc
Confidence 4555555555555 44443555555555555555 5554 2222455555555555555554
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.76 E-value=4.1e-09 Score=107.16 Aligned_cols=229 Identities=21% Similarity=0.275 Sum_probs=134.1
Q ss_pred cccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeecccc-
Q 041570 91 LNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIE- 169 (394)
Q Consensus 91 l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~- 169 (394)
++...|..+|.|++|||++|.--+.+|.. ++.+-+|++|+++.+.+. .+|..++++..|.+|++.++.....++
T Consensus 562 is~~ff~~m~~LrVLDLs~~~~l~~LP~~----I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~ 636 (889)
T KOG4658|consen 562 ISGEFFRSLPLLRVLDLSGNSSLSKLPSS----IGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPG 636 (889)
T ss_pred cCHHHHhhCcceEEEECCCCCccCcCChH----HhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccc
Confidence 34445788999999999998777777765 899999999999999998 899999999999999999987666555
Q ss_pred -ccCCCCCCEEEcCCCCCCc--cccc---cCCCCcEEEccCcccCCccChhhhcCCCCCC----EEECCCCCCCCCcccC
Q 041570 170 -VKGSSKLQSLDLSHNNLNR--IILS---SLTTLSELYLSGMGFEGTFDVQEFDSLSNLE----ELYLSNNKGINNFVVP 239 (394)
Q Consensus 170 -~~~~~~L~~L~l~~n~l~~--~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~----~L~l~~n~~~~~~~~~ 239 (394)
...+++|++|.+....... .... .+..|+.+....... .+. ..+..+..|. .+.+.++... ..+
T Consensus 637 i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~-e~l~~~~~L~~~~~~l~~~~~~~~--~~~- 710 (889)
T KOG4658|consen 637 ILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLL-EDLLGMTRLRSLLQSLSIEGCSKR--TLI- 710 (889)
T ss_pred hhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhH-hhhhhhHHHHHHhHhhhhcccccc--eee-
Confidence 4457999999987654222 1222 445555555433222 000 1122222222 2222222221 222
Q ss_pred cCCCCCCCcCEEEcCCCCCCCChhhhhhcCC------CCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhh
Q 041570 240 QDYRGLSKLKRLDLSGVGIRDGSELLRSMGS------FPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLL 313 (394)
Q Consensus 240 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~------~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 313 (394)
..+..+.+|+.|.+.++..... ....... ++++..+.+..+... ..+.+..-.++|+.|.+..+.....+.
T Consensus 711 ~~~~~l~~L~~L~i~~~~~~e~--~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 711 SSLGSLGNLEELSILDCGISEI--VIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred cccccccCcceEEEEcCCCchh--hcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCC
Confidence 2566777788888877766432 1111100 112222222222211 112222234777778777776655555
Q ss_pred hchhccCCCCeEecCCcccc
Q 041570 314 KTIASFTSLKNLSMVSCEVN 333 (394)
Q Consensus 314 ~~l~~~~~L~~L~l~~n~l~ 333 (394)
+....+..+..+.+..+.+.
T Consensus 788 ~~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 788 PKLKALLELKELILPFNKLE 807 (889)
T ss_pred CHHHHhhhcccEEecccccc
Confidence 44455555555445444444
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.75 E-value=4.7e-10 Score=85.23 Aligned_cols=141 Identities=18% Similarity=0.140 Sum_probs=98.6
Q ss_pred CcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEe
Q 041570 247 KLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLS 326 (394)
Q Consensus 247 ~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ 326 (394)
.+..++|+.|.+-...+.+..+.....|+..+|++|.+...++..-...+.++.|++++|+++ .+|..+..++.|+.++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 355677777776543334445555667788888888887665555556678888888888888 6777788888888888
Q ss_pred cCCcccceeechhhccCCCCCcEEEcCCCCcccCCccccccccccCCCcEEeccccccceeEeecccC
Q 041570 327 MVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLSYSILNANCTILNQA 394 (394)
Q Consensus 327 l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~l~g~~~~~~~~ 394 (394)
++.|.+. ..|. .+..+.++-.||..+ |... +||-.+-.-...-..++.++.+.+++|..-||
T Consensus 107 l~~N~l~-~~p~-vi~~L~~l~~Lds~~--na~~--eid~dl~~s~~~al~~lgnepl~~~~~~klqa 168 (177)
T KOG4579|consen 107 LRFNPLN-AEPR-VIAPLIKLDMLDSPE--NARA--EIDVDLFYSSLPALIKLGNEPLGDETKKKLQA 168 (177)
T ss_pred cccCccc-cchH-HHHHHHhHHHhcCCC--Cccc--cCcHHHhccccHHHHHhcCCcccccCcccccc
Confidence 8888887 5566 444577888888887 7765 67744333334445566777888888876654
No 47
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.64 E-value=3.9e-08 Score=60.55 Aligned_cols=39 Identities=33% Similarity=0.802 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhhhcCC-CC-CCCCCCCCC-CCCCccceeEec
Q 041570 29 EHERFALLRLRHFFSS-PS-RLQNWEDEQ-GDFCQWESVECS 67 (394)
Q Consensus 29 ~~~~~al~~~~~~~~~-~~-~~~~W~~~~-~~~c~w~gv~c~ 67 (394)
++|++||++||.++.+ +. .+.+|.... .++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 6799999999999995 54 899998743 899999999995
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.64 E-value=1.6e-08 Score=85.85 Aligned_cols=236 Identities=22% Similarity=0.173 Sum_probs=140.8
Q ss_pred hhhcCCCCCcEEEcccccCCccchH----hhhcCCCCCEEEcCCceeec---ccc---------ccCCCCCCEEEcCCCC
Q 041570 122 EMLSRLSNLKFLDLRMNLFKNSISS----SLARLSSLISLSLSHNKLEG---SIE---------VKGSSKLQSLDLSHNN 185 (394)
Q Consensus 122 ~~l~~l~~L~~L~L~~n~~~~~~p~----~l~~l~~L~~L~l~~n~l~~---~~~---------~~~~~~L~~L~l~~n~ 185 (394)
..+.-+..++.++||+|.|...-.. .+.+-.+|+..+++.-.... .++ ..+|+.|+.+++|.|.
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 3356688999999999998754333 44556788888877543221 111 4678999999999998
Q ss_pred CCccccc-------cCCCCcEEEccCcccCCccChh-------------hhcCCCCCCEEECCCCCCCCCccc--CcCCC
Q 041570 186 LNRIILS-------SLTTLSELYLSGMGFEGTFDVQ-------------EFDSLSNLEELYLSNNKGINNFVV--PQDYR 243 (394)
Q Consensus 186 l~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~-------------~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~ 243 (394)
|....|. ..+.|++|.+++|++. .+.-. -..+-|.|+.+....|++.+|..- ...+.
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~ 182 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLE 182 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHH
Confidence 8777554 5678888888888764 22111 123456788888888877644221 11233
Q ss_pred CCCCcCEEEcCCCCCC--CChhh-hhhcCCCCCCCEEeCcCCCCCcc----chhhcCCCCCCCEEEcCCCcCChhhhhc-
Q 041570 244 GLSKLKRLDLSGVGIR--DGSEL-LRSMGSFPSLKTLFLEANNFTAT----TTQELHNFTNLEFLNLRHSSLDINLLKT- 315 (394)
Q Consensus 244 ~l~~L~~L~l~~n~~~--~~~~~-~~~l~~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~- 315 (394)
.-.+|+++.+..|.+. |.+.+ ...+..+.+|+.||+.+|.++-. +...+..++.|+.|.+.+|-++.....+
T Consensus 183 sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v 262 (388)
T COG5238 183 SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSV 262 (388)
T ss_pred hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHH
Confidence 3457777777777664 22111 12234556777888887776532 3445556667777777777665432222
Q ss_pred ---h--hccCCCCeEecCCcccceeech------hhccCCCCCcEEEcCCCCcccC
Q 041570 316 ---I--ASFTSLKNLSMVSCEVNGVLDG------QGFLNFKSLERLDMGGARNALN 360 (394)
Q Consensus 316 ---l--~~~~~L~~L~l~~n~l~~~ip~------~~~~~~~~L~~L~l~~~~n~l~ 360 (394)
+ ...++|+.|....|...+.+-. ..-.++|-|..|.+.+ |.++
T Consensus 263 ~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng--Nr~~ 316 (388)
T COG5238 263 LRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG--NRIK 316 (388)
T ss_pred HHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc--Ccch
Confidence 1 1246677777777765543221 1112344455555555 5554
No 49
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.59 E-value=6.3e-09 Score=93.32 Aligned_cols=279 Identities=19% Similarity=0.100 Sum_probs=134.0
Q ss_pred CCCEEeccCCcCCCccccchhhhhcCCCCCcEEEccccc-CCccchHhhh-cCCCCCEEEcCCceeecccc----ccCCC
Q 041570 101 QLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNL-FKNSISSSLA-RLSSLISLSLSHNKLEGSIE----VKGSS 174 (394)
Q Consensus 101 ~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~-~~~~~p~~l~-~l~~L~~L~l~~n~l~~~~~----~~~~~ 174 (394)
.|+.|.+.++.-.+.-+.. ....+++++++|++.++. +++.....++ .+++|+++++..|..-.... ...++
T Consensus 139 ~lk~LSlrG~r~v~~sslr--t~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLR--TFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred ccccccccccccCCcchhh--HHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 4566666666433332221 113456666666666653 3332222332 46667777666643221111 34566
Q ss_pred CCCEEEcCCCC-CCccc----cccCCCCcEEEccCcccCCccC-hhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCc
Q 041570 175 KLQSLDLSHNN-LNRII----LSSLTTLSELYLSGMGFEGTFD-VQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKL 248 (394)
Q Consensus 175 ~L~~L~l~~n~-l~~~~----~~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L 248 (394)
+|++++++++. +++.. ..++..++.+.+.+|.-.+.-. ...-+....+.++++..+...+..-....-..+..|
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 77777776654 33321 1244555555555443211000 011122333444554444322111111122345667
Q ss_pred CEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCC-CCccchhhcC-CCCCCCEEEcCCCcCC--hhhhhchhccCCCCe
Q 041570 249 KRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANN-FTATTTQELH-NFTNLEFLNLRHSSLD--INLLKTIASFTSLKN 324 (394)
Q Consensus 249 ~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~l~-~~~~L~~L~l~~n~l~--~~~~~~l~~~~~L~~ 324 (394)
++++.+++...+...+-..-..+.+|+.+.++.++ ++......++ +++.|+.+++..+... +.+...-.+++.|+.
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ 376 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV 376 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence 77777776543332122222345677777777774 4433333332 3567777777766442 223333345677777
Q ss_pred EecCCcccceee----chhhccCCCCCcEEEcCCCCcccCCccccccccccCCCcEEeccccc
Q 041570 325 LSMVSCEVNGVL----DGQGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLSYSI 383 (394)
Q Consensus 325 L~l~~n~l~~~i----p~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~ 383 (394)
+.++.|....+- ....-.....|+.+.+++|+ .++ ...-..+..|++|+.+++-+++
T Consensus 377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p-~i~-d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP-LIT-DATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred CChhhhhhhhhhhhhhhhhccccccccceeeecCCC-Cch-HHHHHHHhhCcccceeeeechh
Confidence 777766533111 01122334556777777752 333 2333455667777777776664
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.57 E-value=1.3e-09 Score=103.96 Aligned_cols=128 Identities=27% Similarity=0.280 Sum_probs=97.9
Q ss_pred CcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhc-hhccCCCCeE
Q 041570 247 KLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKT-IASFTSLKNL 325 (394)
Q Consensus 247 ~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~-l~~~~~L~~L 325 (394)
.|...+.++|.+.- +...+.-++.++.|+|+.|+++.. +.+..+++|++|||++|.++ .+|.. ...+. |+.|
T Consensus 165 ~L~~a~fsyN~L~~---mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L 237 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL---MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLL 237 (1096)
T ss_pred hHhhhhcchhhHHh---HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heee
Confidence 57788888888865 456777788999999999999866 46888999999999999987 34432 23343 9999
Q ss_pred ecCCcccceeechhhccCCCCCcEEEcCCCCcccCCcccc-ccccccCCCcEEecccccccee
Q 041570 326 SMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQ-IIGESMASLKHLSLSYSILNAN 387 (394)
Q Consensus 326 ~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~-~~~~~~~~L~~L~l~~n~l~g~ 387 (394)
.+++|.++ .+- .+.++.+|+.||+++ |-+. +.-. .-+..+..|+.|+|.+|.+.+.
T Consensus 238 ~lrnN~l~-tL~--gie~LksL~~LDlsy--Nll~-~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 238 NLRNNALT-TLR--GIENLKSLYGLDLSY--NLLS-EHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred eecccHHH-hhh--hHHhhhhhhccchhH--hhhh-cchhhhHHHHHHHHHHHhhcCCccccC
Confidence 99999887 433 467888999999999 8887 4322 3445677889999999987653
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=5.8e-08 Score=83.59 Aligned_cols=61 Identities=33% Similarity=0.429 Sum_probs=39.5
Q ss_pred CCCCCcEEEcccccCCc--cchHhhhcCCCCCEEEcCCceeeccccc--cCCCCCCEEEcCCCCC
Q 041570 126 RLSNLKFLDLRMNLFKN--SISSSLARLSSLISLSLSHNKLEGSIEV--KGSSKLQSLDLSHNNL 186 (394)
Q Consensus 126 ~l~~L~~L~L~~n~~~~--~~p~~l~~l~~L~~L~l~~n~l~~~~~~--~~~~~L~~L~l~~n~l 186 (394)
.+++++++||.+|.++. .+-.-+.++|.|++|+++.|.+...+.. ....+|+.|-+.+..+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL 133 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence 46778888888888773 3444556788888888888887664431 2335555555555443
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=4.1e-08 Score=84.47 Aligned_cols=103 Identities=27% Similarity=0.348 Sum_probs=52.8
Q ss_pred CCCcEEEcccccCCc--cchHhhhcCCCCCEEEcCCceeecc--cc--ccCCCCCCEEEcCCCCCCcccc---ccCCCCc
Q 041570 128 SNLKFLDLRMNLFKN--SISSSLARLSSLISLSLSHNKLEGS--IE--VKGSSKLQSLDLSHNNLNRIIL---SSLTTLS 198 (394)
Q Consensus 128 ~~L~~L~L~~n~~~~--~~p~~l~~l~~L~~L~l~~n~l~~~--~~--~~~~~~L~~L~l~~n~l~~~~~---~~l~~L~ 198 (394)
..++.+.+.++.+.. ..-..-..++.++.+||.+|.++.= +. ...++.|+.|+++.|.+...+- ....+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 344455555554432 1111122456677777777776541 11 3455666666666666655432 2445566
Q ss_pred EEEccCcccCCccChhhhcCCCCCCEEECCCC
Q 041570 199 ELYLSGMGFEGTFDVQEFDSLSNLEELYLSNN 230 (394)
Q Consensus 199 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n 230 (394)
.|-+.+..+.=......+..+|.+++|+++.|
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 66665554432222234455556666666555
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.43 E-value=4.9e-09 Score=100.09 Aligned_cols=124 Identities=29% Similarity=0.261 Sum_probs=78.1
Q ss_pred CcEEEcccccCCccchHhhhcCCCCCEEEcCCceeeccccccCCCCCCEEEcCCCCCCccc---cccCCCCcEEEccCcc
Q 041570 130 LKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIEVKGSSKLQSLDLSHNNLNRII---LSSLTTLSELYLSGMG 206 (394)
Q Consensus 130 L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~~~ 206 (394)
|...+.++|.+. .+-.++.-++.|++|+|++|+++..-.+..++.|++||+++|.+.... +..+. |+.|.+.+|.
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~ 243 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA 243 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccH
Confidence 445555666554 444556666777777777777776555666777777777777766542 22343 7777777777
Q ss_pred cCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCC
Q 041570 207 FEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIR 259 (394)
Q Consensus 207 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 259 (394)
++.. ..+.++++|+.||+++|-+. +..-...+..+..|++|+|.+|.+.
T Consensus 244 l~tL---~gie~LksL~~LDlsyNll~-~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 244 LTTL---RGIENLKSLYGLDLSYNLLS-EHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHhh---hhHHhhhhhhccchhHhhhh-cchhhhHHHHHHHHHHHhhcCCccc
Confidence 6632 34667777777777777665 3222224555666777777777654
No 54
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.32 E-value=5.5e-08 Score=87.41 Aligned_cols=299 Identities=19% Similarity=0.157 Sum_probs=161.2
Q ss_pred CcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhh-cCCCCCcEEEcccc-cCCccchHhh
Q 041570 71 GRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEML-SRLSNLKFLDLRMN-LFKNSISSSL 148 (394)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l-~~l~~L~~L~L~~n-~~~~~~p~~l 148 (394)
++.+++.+.|..- .+...+- .....+|+++.|.+.++. .+.+..+..+ ..+++|++|++..+ .++...-+.+
T Consensus 138 g~lk~LSlrG~r~--v~~sslr-t~~~~CpnIehL~l~gc~---~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l 211 (483)
T KOG4341|consen 138 GFLKELSLRGCRA--VGDSSLR-TFASNCPNIEHLALYGCK---KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYL 211 (483)
T ss_pred ccccccccccccc--CCcchhh-HHhhhCCchhhhhhhcce---eccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHH
Confidence 4667777776543 2222121 224678999999999885 2333333334 46899999999985 5554444433
Q ss_pred -hcCCCCCEEEcCCceeecc---cc-ccCCCCCCEEEcCCCCCCcc-c----cccCCCCcEEEccCccc-CCccChhhhc
Q 041570 149 -ARLSSLISLSLSHNKLEGS---IE-VKGSSKLQSLDLSHNNLNRI-I----LSSLTTLSELYLSGMGF-EGTFDVQEFD 217 (394)
Q Consensus 149 -~~l~~L~~L~l~~n~l~~~---~~-~~~~~~L~~L~l~~n~l~~~-~----~~~l~~L~~L~l~~~~~-~~~~~~~~~~ 217 (394)
..+++|++++++.+..... .+ ..++..++.+.+.++.=.+. . ...+..+.++++..|.. +..-....-.
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence 4689999999998754321 12 44555566665555421111 0 11344455555555432 2111111123
Q ss_pred CCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCC-CCCChhhhhhcCCCCCCCEEeCcCCCCCc--cchhhcCC
Q 041570 218 SLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVG-IRDGSELLRSMGSFPSLKTLFLEANNFTA--TTTQELHN 294 (394)
Q Consensus 218 ~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~l~~~~~L~~L~l~~n~~~~--~~~~~l~~ 294 (394)
.+..|+++..+++...+......--.+..+|+++-++.|+ |+.. .+...=.+++.|+.+++..+...- .+...-.+
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~-~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR-GFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh-hhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 4556777777766543122222122455677777777775 3322 111122345677777777775421 12222245
Q ss_pred CCCCCEEEcCCCcC-Chhh----hhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCcccccccc
Q 041570 295 FTNLEFLNLRHSSL-DINL----LKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGE 369 (394)
Q Consensus 295 ~~~L~~L~l~~n~l-~~~~----~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~ 369 (394)
++.|+.+.++.+.. ++.- ...-..+..|+.+.++++..+.+-..+.+..+++|+.+++-+|.+... ..+...-.
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk-~~i~~~~~ 449 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK-EAISRFAT 449 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh-hhhHHHHh
Confidence 67777777777654 2221 111234566777777777654332223556667777777777643333 44444445
Q ss_pred ccCCCcEE
Q 041570 370 SMASLKHL 377 (394)
Q Consensus 370 ~~~~L~~L 377 (394)
.+|++++.
T Consensus 450 ~lp~i~v~ 457 (483)
T KOG4341|consen 450 HLPNIKVH 457 (483)
T ss_pred hCccceeh
Confidence 55655544
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.06 E-value=2.9e-06 Score=84.51 Aligned_cols=155 Identities=21% Similarity=0.276 Sum_probs=97.3
Q ss_pred CCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCC
Q 041570 220 SNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLE 299 (394)
Q Consensus 220 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 299 (394)
.+|++|++++.......-+...-..+|+|+.|.+.+-.+.... +-....++|+|..||+++.+++.. ..++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence 5688888877554311112222345678888888887665432 445566778888888888887754 5577788888
Q ss_pred EEEcCCCcCCh-hhhhchhccCCCCeEecCCccccee--ech---hhccCCCCCcEEEcCCCCcccCCccccccccccCC
Q 041570 300 FLNLRHSSLDI-NLLKTIASFTSLKNLSMVSCEVNGV--LDG---QGFLNFKSLERLDMGGARNALNASFLQIIGESMAS 373 (394)
Q Consensus 300 ~L~l~~n~l~~-~~~~~l~~~~~L~~L~l~~n~l~~~--ip~---~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~ 373 (394)
.|.+.+=.+.. .....+.++++|+.||+|....... +.. +.-..+|+|+.||.|+ +.+....+...+...++
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg--Tdi~~~~le~ll~sH~~ 276 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG--TDINEEILEELLNSHPN 276 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC--cchhHHHHHHHHHhCcc
Confidence 88887766653 2334466788888888887654421 111 1223567888888888 77762333344455666
Q ss_pred CcEEec
Q 041570 374 LKHLSL 379 (394)
Q Consensus 374 L~~L~l 379 (394)
|+.+-+
T Consensus 277 L~~i~~ 282 (699)
T KOG3665|consen 277 LQQIAA 282 (699)
T ss_pred Hhhhhh
Confidence 666553
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=8.9e-06 Score=50.09 Aligned_cols=37 Identities=35% Similarity=0.497 Sum_probs=20.2
Q ss_pred CCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeec
Q 041570 129 NLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEG 166 (394)
Q Consensus 129 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~ 166 (394)
+|++|++++|+++ .+|..++++++|++|++++|.++.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 4556666666665 445455666666666666665553
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.98 E-value=3.2e-06 Score=84.24 Aligned_cols=156 Identities=18% Similarity=0.227 Sum_probs=112.1
Q ss_pred cCCCCcEEEccCcccCCccChhhh-cCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCC
Q 041570 193 SLTTLSELYLSGMGFEGTFDVQEF-DSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSF 271 (394)
Q Consensus 193 ~l~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~ 271 (394)
.-.+|++|++++......-.+..+ ..+|+|+.|.+.+-.+...+.. ....+.++|..||+|++.++.. ..++.+
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~-~lc~sFpNL~sLDIS~TnI~nl----~GIS~L 194 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFS-QLCASFPNLRSLDISGTNISNL----SGISRL 194 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHH-HHhhccCccceeecCCCCccCc----HHHhcc
Confidence 446899999988654322222333 4589999999999877633332 3567889999999999988753 467888
Q ss_pred CCCCEEeCcCCCCCc-cchhhcCCCCCCCEEEcCCCcCChh--hhhc----hhccCCCCeEecCCcccceeechhhccCC
Q 041570 272 PSLKTLFLEANNFTA-TTTQELHNFTNLEFLNLRHSSLDIN--LLKT----IASFTSLKNLSMVSCEVNGVLDGQGFLNF 344 (394)
Q Consensus 272 ~~L~~L~l~~n~~~~-~~~~~l~~~~~L~~L~l~~n~l~~~--~~~~----l~~~~~L~~L~l~~n~l~~~ip~~~~~~~ 344 (394)
++|+.|.+.+-.+.. ..-..+-++++|+.||+|....... +... -..+|+|+.||.++..+++.+-...+..-
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH 274 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSH 274 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhC
Confidence 999999998887753 2223466799999999998765421 2222 24579999999999999887776566666
Q ss_pred CCCcEEEcC
Q 041570 345 KSLERLDMG 353 (394)
Q Consensus 345 ~~L~~L~l~ 353 (394)
|+|+.+-+-
T Consensus 275 ~~L~~i~~~ 283 (699)
T KOG3665|consen 275 PNLQQIAAL 283 (699)
T ss_pred ccHhhhhhh
Confidence 777776654
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.96 E-value=1.8e-05 Score=48.71 Aligned_cols=36 Identities=39% Similarity=0.561 Sum_probs=15.7
Q ss_pred CcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCC
Q 041570 247 KLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFT 285 (394)
Q Consensus 247 ~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 285 (394)
+|++|++++|+++. +|+.+..+++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~---l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD---LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS---HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc---cCchHhCCCCCCEEEecCCCCC
Confidence 34444444444443 3333444444444444444444
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.91 E-value=2.5e-05 Score=63.89 Aligned_cols=103 Identities=24% Similarity=0.310 Sum_probs=70.9
Q ss_pred CcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChh-hhhchhccCCCCeE
Q 041570 247 KLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDIN-LLKTIASFTSLKNL 325 (394)
Q Consensus 247 ~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~-~~~~l~~~~~L~~L 325 (394)
+...+|+++|.+... +.|..++.|.+|.+++|+++.+-|.--.-+++|..|.+.+|.+... -..-+..+|+|++|
T Consensus 43 ~~d~iDLtdNdl~~l----~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL----DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccceecccccchhhc----ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 566788888877543 3566777888888888888876665444557788888888887631 12235677888888
Q ss_pred ecCCcccceeech---hhccCCCCCcEEEcCC
Q 041570 326 SMVSCEVNGVLDG---QGFLNFKSLERLDMGG 354 (394)
Q Consensus 326 ~l~~n~l~~~ip~---~~~~~~~~L~~L~l~~ 354 (394)
.+-+|.++.. .. ..+..+|+|+.||+++
T Consensus 119 tll~Npv~~k-~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHK-KNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcc-cCceeEEEEecCcceEeehhh
Confidence 8888876622 21 3456778888888876
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.90 E-value=5.5e-07 Score=68.81 Aligned_cols=90 Identities=26% Similarity=0.342 Sum_probs=55.8
Q ss_pred CCCCCcCEEEcCCCCCCCChhhhhhcCC-CCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCC
Q 041570 243 RGLSKLKRLDLSGVGIRDGSELLRSMGS-FPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTS 321 (394)
Q Consensus 243 ~~l~~L~~L~l~~n~~~~~~~~~~~l~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 321 (394)
.....|..+++++|.+.. +|+.+.. .+.++.|++++|+++ .+|..+..++.|+.|++++|.+. ..|..+..+.+
T Consensus 50 ~~~~el~~i~ls~N~fk~---fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~ 124 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKK---FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIK 124 (177)
T ss_pred hCCceEEEEecccchhhh---CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHh
Confidence 334456666777776665 3444433 346677777777776 34455777777777777777776 44555555667
Q ss_pred CCeEecCCcccceeech
Q 041570 322 LKNLSMVSCEVNGVLDG 338 (394)
Q Consensus 322 L~~L~l~~n~l~~~ip~ 338 (394)
+..|+..+|... +||.
T Consensus 125 l~~Lds~~na~~-eid~ 140 (177)
T KOG4579|consen 125 LDMLDSPENARA-EIDV 140 (177)
T ss_pred HHHhcCCCCccc-cCcH
Confidence 777777766655 5555
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.87 E-value=5.2e-05 Score=70.08 Aligned_cols=132 Identities=17% Similarity=0.244 Sum_probs=80.3
Q ss_pred cCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCC-CCCCChhhhhhcCCC
Q 041570 193 SLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGV-GIRDGSELLRSMGSF 271 (394)
Q Consensus 193 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~l~~~ 271 (394)
.+.+++.|++++|.+. .+| . -.++|++|.++++... ..+|. .+ ..+|++|++++| .+.. +|
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP-~---LP~sLtsL~Lsnc~nL-tsLP~-~L--P~nLe~L~Ls~Cs~L~s---LP------ 111 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLP-V---LPNELTEITIENCNNL-TTLPG-SI--PEGLEKLTVCHCPEISG---LP------ 111 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccC-C---CCCCCcEEEccCCCCc-ccCCc-hh--hhhhhheEccCcccccc---cc------
Confidence 4688999999998766 444 1 2346999999876543 23442 22 358999999988 4332 44
Q ss_pred CCCCEEeCcCCCCCc--cchhhcCCCCCCCEEEcCCCc-CC-hhhhhchhccCCCCeEecCCcccceeechhhccCCCCC
Q 041570 272 PSLKTLFLEANNFTA--TTTQELHNFTNLEFLNLRHSS-LD-INLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSL 347 (394)
Q Consensus 272 ~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~n~-l~-~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L 347 (394)
++|+.|++..+.... .+| ++|+.|.+.++. .. ..+|.. -.++|++|++++|... .+|. .+. .+|
T Consensus 112 ~sLe~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~-~LP--~SL 179 (426)
T PRK15386 112 ESVRSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPE-KLP--ESL 179 (426)
T ss_pred cccceEEeCCCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCcc-ccc--ccC
Confidence 357778887665432 222 356777775432 11 111211 1257888999888765 3444 232 478
Q ss_pred cEEEcCC
Q 041570 348 ERLDMGG 354 (394)
Q Consensus 348 ~~L~l~~ 354 (394)
+.|+++.
T Consensus 180 k~L~ls~ 186 (426)
T PRK15386 180 QSITLHI 186 (426)
T ss_pred cEEEecc
Confidence 8888876
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.85 E-value=3.4e-05 Score=63.14 Aligned_cols=103 Identities=24% Similarity=0.221 Sum_probs=47.3
Q ss_pred CEEEcCCceeeccccccCCCCCCEEEcCCCCCCccccc---cCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCC
Q 041570 155 ISLSLSHNKLEGSIEVKGSSKLQSLDLSHNNLNRIILS---SLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNK 231 (394)
Q Consensus 155 ~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 231 (394)
..+|+++|.+.....+..++.|..|.++.|+++..-|. .+++|+.|.+.+|.+...-...-+..+++|++|.+-+|.
T Consensus 45 d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 45 DAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred ceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence 33444444433322233334444444444444433332 444455555555544311111235566677777776666
Q ss_pred CCCCc-ccCcCCCCCCCcCEEEcCCCC
Q 041570 232 GINNF-VVPQDYRGLSKLKRLDLSGVG 257 (394)
Q Consensus 232 ~~~~~-~~~~~~~~l~~L~~L~l~~n~ 257 (394)
..+.. .-...+..+++|++||+++-.
T Consensus 125 v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 125 VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred hhcccCceeEEEEecCcceEeehhhhh
Confidence 54211 111234566677777766643
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.84 E-value=6.5e-05 Score=69.44 Aligned_cols=139 Identities=14% Similarity=0.133 Sum_probs=79.1
Q ss_pred hhhcCCCCCEEEcCCceeeccccccCCCCCCEEEcCCCCCCccccc-cCCCCcEEEccCcccCCccChhhhcCCCCCCEE
Q 041570 147 SLARLSSLISLSLSHNKLEGSIEVKGSSKLQSLDLSHNNLNRIILS-SLTTLSELYLSGMGFEGTFDVQEFDSLSNLEEL 225 (394)
Q Consensus 147 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 225 (394)
.+..+.++++|++++|.++. +| .-..+|++|.++++.-....|. -.++|++|++++|.....+| .+|+.|
T Consensus 47 r~~~~~~l~~L~Is~c~L~s-LP-~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP-------~sLe~L 117 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIES-LP-VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLP-------ESVRSL 117 (426)
T ss_pred HHHHhcCCCEEEeCCCCCcc-cC-CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccc-------cccceE
Confidence 35567889999999997766 44 2225789999887543333443 23478888888773322343 346667
Q ss_pred ECCCCCCCCCcccCcCCCCC-CCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcC
Q 041570 226 YLSNNKGINNFVVPQDYRGL-SKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLR 304 (394)
Q Consensus 226 ~l~~n~~~~~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 304 (394)
++..+... .+..+ ++|+.|.+.++.......+|.. -.++|++|++++|... ..|..+. .+|+.|+++
T Consensus 118 ~L~~n~~~-------~L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 118 EIKGSATD-------SIKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH 185 (426)
T ss_pred EeCCCCCc-------ccccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence 76654432 11222 2566777654321110002211 1256888888877654 3344444 577788877
Q ss_pred CC
Q 041570 305 HS 306 (394)
Q Consensus 305 ~n 306 (394)
.+
T Consensus 186 ~n 187 (426)
T PRK15386 186 IE 187 (426)
T ss_pred cc
Confidence 65
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.53 E-value=0.00042 Score=54.08 Aligned_cols=82 Identities=21% Similarity=0.325 Sum_probs=29.0
Q ss_pred cCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCC
Q 041570 268 MGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSL 347 (394)
Q Consensus 268 l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L 347 (394)
+..+++|+.+.+..+ +.......|.++++++.+.+.+ .+.......|..+++|+.+++..+ +. .++...+.++ .+
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~-~i~~~~f~~~-~l 105 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-IT-EIGSSSFSNC-NL 105 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--B-EEHTTTTTT--T-
T ss_pred ccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-cc-EEchhhhcCC-Cc
Confidence 334444444444442 3333333444444455555533 222112223344455555555433 22 3343344444 55
Q ss_pred cEEEcCC
Q 041570 348 ERLDMGG 354 (394)
Q Consensus 348 ~~L~l~~ 354 (394)
+.+.+..
T Consensus 106 ~~i~~~~ 112 (129)
T PF13306_consen 106 KEINIPS 112 (129)
T ss_dssp -EEE-TT
T ss_pred eEEEECC
Confidence 5555543
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.53 E-value=0.00037 Score=54.45 Aligned_cols=125 Identities=17% Similarity=0.259 Sum_probs=60.9
Q ss_pred hhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhc
Q 041570 213 VQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQEL 292 (394)
Q Consensus 213 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l 292 (394)
...|..+++|+.+.+.. .+ ..+....|.++++|+.+.+.++ +... -...+..+++++.+.+.. .+.......|
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~--~~I~~~~F~~~~~l~~i~~~~~-~~~i--~~~~F~~~~~l~~i~~~~-~~~~i~~~~F 77 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TI--KKIGENAFSNCTSLKSINFPNN-LTSI--GDNAFSNCKSLESITFPN-NLKSIGDNAF 77 (129)
T ss_dssp TTTTTT-TT--EEEETS-T----EE-TTTTTT-TT-SEEEESST-TSCE---TTTTTT-TT-EEEEETS-TT-EE-TTTT
T ss_pred HHHHhCCCCCCEEEECC-Ce--eEeChhhccccccccccccccc-cccc--ceeeeecccccccccccc-cccccccccc
Confidence 35567777788887764 23 2566667778878888888764 4432 123466666788888865 4443444567
Q ss_pred CCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCc
Q 041570 293 HNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLE 348 (394)
Q Consensus 293 ~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~ 348 (394)
..+++|+.+++..+ +.......+.++ +|+.+.+.. .+. .++...+.++++|+
T Consensus 78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKLK 129 (129)
T ss_dssp TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG------
T ss_pred cccccccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccCC
Confidence 77788888888665 443334456666 788887765 333 45555666666553
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.46 E-value=5.1e-05 Score=64.72 Aligned_cols=39 Identities=28% Similarity=0.359 Sum_probs=16.8
Q ss_pred CCCCCEEeCcCC--CCCccchhhcCCCCCCCEEEcCCCcCC
Q 041570 271 FPSLKTLFLEAN--NFTATTTQELHNFTNLEFLNLRHSSLD 309 (394)
Q Consensus 271 ~~~L~~L~l~~n--~~~~~~~~~l~~~~~L~~L~l~~n~l~ 309 (394)
+++|+.|.++.| +.++.++.....+++|+++++++|+++
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 344555555555 333322222223345555555555444
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=9.8e-06 Score=69.49 Aligned_cols=96 Identities=30% Similarity=0.310 Sum_probs=69.0
Q ss_pred CcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccch--Hhh
Q 041570 71 GRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSIS--SSL 148 (394)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p--~~l 148 (394)
..|.+|+..|.+++++.. ..+++.|++|.|+-|.++...| +..|++|++|+|..|.|.+ +- ..+
T Consensus 19 ~~vkKLNcwg~~L~DIsi-------c~kMp~lEVLsLSvNkIssL~p------l~rCtrLkElYLRkN~I~s-ldEL~YL 84 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISI-------CEKMPLLEVLSLSVNKISSLAP------LQRCTRLKELYLRKNCIES-LDELEYL 84 (388)
T ss_pred HHhhhhcccCCCccHHHH-------HHhcccceeEEeeccccccchh------HHHHHHHHHHHHHhccccc-HHHHHHH
Confidence 346777777777654432 4678889999999998876555 7788899999999888863 32 246
Q ss_pred hcCCCCCEEEcCCceeecccc-------ccCCCCCCEEE
Q 041570 149 ARLSSLISLSLSHNKLEGSIE-------VKGSSKLQSLD 180 (394)
Q Consensus 149 ~~l~~L~~L~l~~n~l~~~~~-------~~~~~~L~~L~ 180 (394)
.++|+|++|+|..|.-.|.-+ +..+++|+.||
T Consensus 85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 788888988888887766433 34557777765
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.33 E-value=6.1e-05 Score=73.18 Aligned_cols=85 Identities=29% Similarity=0.290 Sum_probs=37.0
Q ss_pred cCCCCcEEEccCcccCCccChhhhc-CCCCCCEEECCCCC-CCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCC
Q 041570 193 SLTTLSELYLSGMGFEGTFDVQEFD-SLSNLEELYLSNNK-GINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGS 270 (394)
Q Consensus 193 ~l~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~-~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~ 270 (394)
.+++|+.++++++..........++ .+++|++|.+.++. +++..+. .....++.|++|+++++...+...+......
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~-~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~ 319 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLV-SIAERCPSLRELDLSGCHGLTDSGLEALLKN 319 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHH-HHHHhcCcccEEeeecCccchHHHHHHHHHh
Confidence 4455566666555521111112222 25566666655554 2311111 1334455566666666544322223333334
Q ss_pred CCCCCEEe
Q 041570 271 FPSLKTLF 278 (394)
Q Consensus 271 ~~~L~~L~ 278 (394)
+++++.+.
T Consensus 320 c~~l~~l~ 327 (482)
T KOG1947|consen 320 CPNLRELK 327 (482)
T ss_pred Ccchhhhh
Confidence 44444433
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.18 E-value=0.00015 Score=61.99 Aligned_cols=104 Identities=19% Similarity=0.221 Sum_probs=74.0
Q ss_pred CCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCC--cCChhhhhchhccCCCCeEecCCcccce--eechhhccCC
Q 041570 269 GSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHS--SLDINLLKTIASFTSLKNLSMVSCEVNG--VLDGQGFLNF 344 (394)
Q Consensus 269 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n--~l~~~~~~~l~~~~~L~~L~l~~n~l~~--~ip~~~~~~~ 344 (394)
.....|+.+++.+..++.. ..+..+++|+.|.++.| .+.+.++.....+++|+++++++|++.. .++ .+..+
T Consensus 40 d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~--pl~~l 115 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR--PLKEL 115 (260)
T ss_pred ccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc--hhhhh
Confidence 3445677777777766543 45677899999999999 6666666666777999999999998762 222 35677
Q ss_pred CCCcEEEcCCCCcccCCcccc----ccccccCCCcEEecc
Q 041570 345 KSLERLDMGGARNALNASFLQ----IIGESMASLKHLSLS 380 (394)
Q Consensus 345 ~~L~~L~l~~~~n~l~~g~l~----~~~~~~~~L~~L~l~ 380 (394)
.+|..||+.+| ..+ + +- ..|.-+++|++||-.
T Consensus 116 ~nL~~Ldl~n~--~~~-~-l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 116 ENLKSLDLFNC--SVT-N-LDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred cchhhhhcccC--Ccc-c-cccHHHHHHHHhhhhcccccc
Confidence 88999999994 333 2 22 455667888887653
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=2.4e-05 Score=67.22 Aligned_cols=95 Identities=22% Similarity=0.225 Sum_probs=71.9
Q ss_pred CCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeecccc---ccCCCC
Q 041570 99 FQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIE---VKGSSK 175 (394)
Q Consensus 99 l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~~ 175 (394)
+.+.++|++-+|.+++.. ....++.|+.|.|+-|.++.. +.+..|++|++|+|..|.+...-. +.++++
T Consensus 18 l~~vkKLNcwg~~L~DIs------ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS------ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPS 89 (388)
T ss_pred HHHhhhhcccCCCccHHH------HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence 456778888888776432 256789999999999998743 346788999999999998876322 567789
Q ss_pred CCEEEcCCCCCCccccc--------cCCCCcEEE
Q 041570 176 LQSLDLSHNNLNRIILS--------SLTTLSELY 201 (394)
Q Consensus 176 L~~L~l~~n~l~~~~~~--------~l~~L~~L~ 201 (394)
|+.|.|..|...|..+. .+|+|+.||
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999999887776543 577777775
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.26 E-value=0.002 Score=62.60 Aligned_cols=137 Identities=26% Similarity=0.212 Sum_probs=69.0
Q ss_pred cCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCC-CCCCC-h-hhhhhcCCCCCCCEEeCcCCC-CCccchhhc
Q 041570 217 DSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGV-GIRDG-S-ELLRSMGSFPSLKTLFLEANN-FTATTTQEL 292 (394)
Q Consensus 217 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~-~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~l 292 (394)
...+.|+.+.+..+......-.......++.|+.|+++++ ..... . ........+++|+.++++++. +++..-..+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 3456777777766643311111114456667777777662 11111 0 011233345667777777766 554433333
Q ss_pred CC-CCCCCEEEcCCCc-CChhh-hhchhccCCCCeEecCCccccee--echhhccCCCCCcEEEcCC
Q 041570 293 HN-FTNLEFLNLRHSS-LDINL-LKTIASFTSLKNLSMVSCEVNGV--LDGQGFLNFKSLERLDMGG 354 (394)
Q Consensus 293 ~~-~~~L~~L~l~~n~-l~~~~-~~~l~~~~~L~~L~l~~n~l~~~--ip~~~~~~~~~L~~L~l~~ 354 (394)
.. +++|+.|.+.++. +++.. -.....++.|++|+++.|..... +.. ...++++++.+.+..
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~-~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEA-LLKNCPNLRELKLLS 330 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHH-HHHhCcchhhhhhhh
Confidence 33 5677777766665 45432 22334566677777776654211 223 234455555555443
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.24 E-value=4.5e-05 Score=72.94 Aligned_cols=205 Identities=29% Similarity=0.225 Sum_probs=126.1
Q ss_pred CCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhh----cC-CCCCEEEcCCceeecccc------c
Q 041570 102 LESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLA----RL-SSLISLSLSHNKLEGSIE------V 170 (394)
Q Consensus 102 L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~----~l-~~L~~L~l~~n~l~~~~~------~ 170 (394)
+..+.|.+|.+.......+..++...+.|..|++++|.+.+.-...+. .. +.+++|++..|.++..-. +
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 777788888887776666777778888888888888887743333222 22 456777777777765221 3
Q ss_pred cCCCCCCEEEcCCCCCCccc--------cc---cCCCCcEEEccCcccCCccC---hhhhcCCCC-CCEEECCCCCCCCC
Q 041570 171 KGSSKLQSLDLSHNNLNRII--------LS---SLTTLSELYLSGMGFEGTFD---VQEFDSLSN-LEELYLSNNKGINN 235 (394)
Q Consensus 171 ~~~~~L~~L~l~~n~l~~~~--------~~---~l~~L~~L~l~~~~~~~~~~---~~~~~~l~~-L~~L~l~~n~~~~~ 235 (394)
.....++.++++.|.+.... +. ...+++.|++.+|.++.... ...+...+. +.++++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 34677778888887764221 11 34567788888877663211 133444555 66788888876521
Q ss_pred cc--cCcCCCCC-CCcCEEEcCCCCCCC--ChhhhhhcCCCCCCCEEeCcCCCCCccch----hhcCCCCCCCEEEcCCC
Q 041570 236 FV--VPQDYRGL-SKLKRLDLSGVGIRD--GSELLRSMGSFPSLKTLFLEANNFTATTT----QELHNFTNLEFLNLRHS 306 (394)
Q Consensus 236 ~~--~~~~~~~l-~~L~~L~l~~n~~~~--~~~~~~~l~~~~~L~~L~l~~n~~~~~~~----~~l~~~~~L~~L~l~~n 306 (394)
.. ....+..+ ..+++++++.|.++. ...+...+..++.++++.++.|.+..... ..+.....+..+.+.++
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~ 328 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGT 328 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcccc
Confidence 00 01134444 577888888888863 33456666777788888888888765422 22233344555555544
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.55 E-value=0.0063 Score=31.06 Aligned_cols=19 Identities=47% Similarity=0.637 Sum_probs=10.0
Q ss_pred CcEEEcccccCCccchHhhh
Q 041570 130 LKFLDLRMNLFKNSISSSLA 149 (394)
Q Consensus 130 L~~L~L~~n~~~~~~p~~l~ 149 (394)
|++|++++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4554443
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.45 E-value=0.0064 Score=31.03 Aligned_cols=16 Identities=13% Similarity=0.281 Sum_probs=6.7
Q ss_pred CCeEecCCcccceeech
Q 041570 322 LKNLSMVSCEVNGVLDG 338 (394)
Q Consensus 322 L~~L~l~~n~l~~~ip~ 338 (394)
|++|++++|.++ .+|.
T Consensus 2 L~~Ldls~n~l~-~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPS 17 (22)
T ss_dssp ESEEEETSSEES-EEGT
T ss_pred ccEEECCCCcCE-eCCh
Confidence 344444444444 3443
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.55 E-value=0.00064 Score=65.15 Aligned_cols=210 Identities=24% Similarity=0.206 Sum_probs=122.0
Q ss_pred EEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCC-CCCcEEEcccccCCc----cchHh
Q 041570 73 VIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRL-SNLKFLDLRMNLFKN----SISSS 147 (394)
Q Consensus 73 v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l-~~L~~L~L~~n~~~~----~~p~~ 147 (394)
...+.|.++.+.+.+...+ ...+...+.|+.|++++|.+.+.-...+.+.+... +.+++|++..|.+++ .+...
T Consensus 89 l~~L~L~~~~l~~~~~~~l-~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEEL-AQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHHHH-HHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 5566777777766544332 22356677888888888888754444433444443 567777887777663 34455
Q ss_pred hhcCCCCCEEEcCCceeec--cc--c--cc----CCCCCCEEEcCCCCCCccccc-------cCCC-CcEEEccCcccCC
Q 041570 148 LARLSSLISLSLSHNKLEG--SI--E--VK----GSSKLQSLDLSHNNLNRIILS-------SLTT-LSELYLSGMGFEG 209 (394)
Q Consensus 148 l~~l~~L~~L~l~~n~l~~--~~--~--~~----~~~~L~~L~l~~n~l~~~~~~-------~l~~-L~~L~l~~~~~~~ 209 (394)
+.....++.++++.|.+.. .. + .. ...++++|.+.++.++..... ..+. +..+++..|.+..
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 6667788888888887742 11 1 22 346788888888877643211 2333 5568888777653
Q ss_pred ccC---hhhhcCC-CCCCEEECCCCCCCCCcc--cCcCCCCCCCcCEEEcCCCCCCCCh--hhhhhcCCCCCCCEEeCcC
Q 041570 210 TFD---VQEFDSL-SNLEELYLSNNKGINNFV--VPQDYRGLSKLKRLDLSGVGIRDGS--ELLRSMGSFPSLKTLFLEA 281 (394)
Q Consensus 210 ~~~---~~~~~~l-~~L~~L~l~~n~~~~~~~--~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~l~~~~~L~~L~l~~ 281 (394)
... ...+..+ ..+++++++.|.+..... ....+..++.++++.+++|.+.... .+...+.....+..+.+.+
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~ 327 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGG 327 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccc
Confidence 311 1223444 566888888888762211 1124456667888888888776431 1222333334455555554
Q ss_pred CC
Q 041570 282 NN 283 (394)
Q Consensus 282 n~ 283 (394)
+.
T Consensus 328 ~~ 329 (478)
T KOG4308|consen 328 TG 329 (478)
T ss_pred cC
Confidence 43
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.63 E-value=0.022 Score=47.15 Aligned_cols=79 Identities=19% Similarity=0.221 Sum_probs=33.9
Q ss_pred cCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCC-ccchhhcCC-CCCCCEEEcCCC-cCChhhhhchhccCCCCe
Q 041570 248 LKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFT-ATTTQELHN-FTNLEFLNLRHS-SLDINLLKTIASFTSLKN 324 (394)
Q Consensus 248 L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~-~~~~~~l~~-~~~L~~L~l~~n-~l~~~~~~~l~~~~~L~~ 324 (394)
++.++-+++.+... -.+.+..++.++.|.+.+|.-- .-.-+.+++ .++|+.|++++| .|+..-...+.++++|+.
T Consensus 103 IeaVDAsds~I~~e--Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 103 IEAVDASDSSIMYE--GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred EEEEecCCchHHHH--HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 44444454444333 2334444455555555544321 111111111 245555555544 344444444455555555
Q ss_pred EecC
Q 041570 325 LSMV 328 (394)
Q Consensus 325 L~l~ 328 (394)
|.+.
T Consensus 181 L~l~ 184 (221)
T KOG3864|consen 181 LHLY 184 (221)
T ss_pred HHhc
Confidence 5544
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.94 E-value=0.069 Score=25.21 Aligned_cols=7 Identities=14% Similarity=0.283 Sum_probs=2.5
Q ss_pred eEecCCc
Q 041570 324 NLSMVSC 330 (394)
Q Consensus 324 ~L~l~~n 330 (394)
.|++++|
T Consensus 5 ~L~l~~n 11 (17)
T PF13504_consen 5 TLDLSNN 11 (17)
T ss_dssp EEEETSS
T ss_pred EEECCCC
Confidence 3333333
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.80 E-value=0.023 Score=47.03 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=42.4
Q ss_pred CCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCCh-hhhhchh-ccCCCCeEecCCc-ccceeechhhccCCCCCcE
Q 041570 273 SLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDI-NLLKTIA-SFTSLKNLSMVSC-EVNGVLDGQGFLNFKSLER 349 (394)
Q Consensus 273 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~-~~~~~l~-~~~~L~~L~l~~n-~l~~~ip~~~~~~~~~L~~ 349 (394)
.++.+|-++..+..+.-+-+.+++.++.|.+.+|+--+ ...+.++ -.++|+.|++++| .|+..--. .+..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~-~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA-CLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH-HHHHhhhhHH
Confidence 35666666666665555666666666666666654322 1122221 2355666666655 34422222 4455556666
Q ss_pred EEcCC
Q 041570 350 LDMGG 354 (394)
Q Consensus 350 L~l~~ 354 (394)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 55554
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.89 E-value=0.11 Score=26.92 Aligned_cols=14 Identities=36% Similarity=0.489 Sum_probs=5.1
Q ss_pred CCCEEEcCCCcCCh
Q 041570 297 NLEFLNLRHSSLDI 310 (394)
Q Consensus 297 ~L~~L~l~~n~l~~ 310 (394)
+|+.|++++|.+++
T Consensus 3 ~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 3 NLETLDLSNNQITD 16 (24)
T ss_dssp T-SEEE-TSSBEHH
T ss_pred CCCEEEccCCcCCH
Confidence 34444444444433
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.30 E-value=0.12 Score=26.79 Aligned_cols=16 Identities=38% Similarity=0.484 Sum_probs=6.5
Q ss_pred CCCcEEEcccccCCcc
Q 041570 128 SNLKFLDLRMNLFKNS 143 (394)
Q Consensus 128 ~~L~~L~L~~n~~~~~ 143 (394)
++|++|++++|.+++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 3444555555544433
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.10 E-value=0.43 Score=25.16 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=7.9
Q ss_pred CCCEEeCcCCCCCccc
Q 041570 273 SLKTLFLEANNFTATT 288 (394)
Q Consensus 273 ~L~~L~l~~n~~~~~~ 288 (394)
+|++|+|++|++....
T Consensus 3 ~L~~L~L~~N~l~~lp 18 (26)
T smart00370 3 NLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCEEECCCCcCCcCC
Confidence 4555555555554433
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.10 E-value=0.43 Score=25.16 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=7.9
Q ss_pred CCCEEeCcCCCCCccc
Q 041570 273 SLKTLFLEANNFTATT 288 (394)
Q Consensus 273 ~L~~L~l~~n~~~~~~ 288 (394)
+|++|+|++|++....
T Consensus 3 ~L~~L~L~~N~l~~lp 18 (26)
T smart00369 3 NLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCEEECCCCcCCcCC
Confidence 4555555555554433
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.08 E-value=0.0095 Score=50.30 Aligned_cols=86 Identities=21% Similarity=0.131 Sum_probs=61.9
Q ss_pred CCCcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhh
Q 041570 69 TTGRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSL 148 (394)
Q Consensus 69 ~~~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l 148 (394)
...+|+.||++.+++...|.. |+.++.+..|+++.|.+.-...+ ++....++.+++..|+.+ ..|.++
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n------~s~~t~~~rl~~sknq~~~~~~d-----~~q~~e~~~~~~~~n~~~-~~p~s~ 107 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKN------FSILTRLVRLDLSKNQIKFLPKD-----AKQQRETVNAASHKNNHS-QQPKSQ 107 (326)
T ss_pred ccceeeeehhhhhHHHhhccc------hHHHHHHHHHhccHhhHhhChhh-----HHHHHHHHHHHhhccchh-hCCccc
Confidence 356788888888876555542 45567778888888777544433 566677778888888776 778888
Q ss_pred hcCCCCCEEEcCCceeec
Q 041570 149 ARLSSLISLSLSHNKLEG 166 (394)
Q Consensus 149 ~~l~~L~~L~l~~n~l~~ 166 (394)
+..++++++++-.|.+..
T Consensus 108 ~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred cccCCcchhhhccCcchH
Confidence 888888888888877654
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.71 E-value=0.014 Score=49.41 Aligned_cols=87 Identities=14% Similarity=0.077 Sum_probs=56.9
Q ss_pred cCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCC
Q 041570 268 MGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSL 347 (394)
Q Consensus 268 l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L 347 (394)
+......+.||++.|++.. ....|+-++.+..|+++.|.+. ..|..++....++.+++..|... ..|. +++..+.+
T Consensus 38 i~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~-s~~k~~~~ 113 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK-SQKKEPHP 113 (326)
T ss_pred hhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc-cccccCCc
Confidence 3444566777777776542 2234455566777777777665 56666676677777777777766 6666 67777777
Q ss_pred cEEEcCCCCcccC
Q 041570 348 ERLDMGGARNALN 360 (394)
Q Consensus 348 ~~L~l~~~~n~l~ 360 (394)
+++++-+ |.+.
T Consensus 114 k~~e~k~--~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKK--TEFF 124 (326)
T ss_pred chhhhcc--Ccch
Confidence 7777777 6554
No 85
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=84.06 E-value=8.3 Score=36.64 Aligned_cols=111 Identities=23% Similarity=0.063 Sum_probs=61.8
Q ss_pred CCCcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhh
Q 041570 69 TTGRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSL 148 (394)
Q Consensus 69 ~~~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l 148 (394)
...++..++++.+.+.+-++.++....+. +.++.|..+...-..... =+.-..+.+++++.|.....+|..+
T Consensus 163 pnpr~r~~dls~npi~dkvpihl~~p~~p-------l~lr~c~lsskfis~l~~-qsg~~~lteldls~n~~Kddip~~~ 234 (553)
T KOG4242|consen 163 PNPRARQHDLSPNPIGDKVPIHLPQPGNP-------LSLRVCELSSKFISKLLI-QSGRLWLTELDLSTNGGKDDIPRTL 234 (553)
T ss_pred CcchhhhhccCCCcccccCCccccCCCCc-------cchhhhhhhhhHHHHhhh-hhccccccccccccCCCCccchhHH
Confidence 34567788888887766666555544332 455555554332221110 0122357788888888887777654
Q ss_pred hc---CCCCCEEEcCCceeecccc-----ccCCCCCCEEEcCCCCCC
Q 041570 149 AR---LSSLISLSLSHNKLEGSIE-----VKGSSKLQSLDLSHNNLN 187 (394)
Q Consensus 149 ~~---l~~L~~L~l~~n~l~~~~~-----~~~~~~L~~L~l~~n~l~ 187 (394)
.. -..++.++.+...+.-..- ...-+.+...+++.|..+
T Consensus 235 n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s 281 (553)
T KOG4242|consen 235 NKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTS 281 (553)
T ss_pred HHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCC
Confidence 32 2356677776655443221 223356666677666543
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=72.54 E-value=3.5 Score=22.21 Aligned_cols=13 Identities=31% Similarity=0.455 Sum_probs=6.7
Q ss_pred CCCEEEcCCCcCC
Q 041570 297 NLEFLNLRHSSLD 309 (394)
Q Consensus 297 ~L~~L~l~~n~l~ 309 (394)
+|+.|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=71.27 E-value=3.2 Score=40.05 Aligned_cols=65 Identities=28% Similarity=0.259 Sum_probs=35.3
Q ss_pred CCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCC--CCCccchhhcCCC--CCCCEEEcCCCcCCh
Q 041570 244 GLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEAN--NFTATTTQELHNF--TNLEFLNLRHSSLDI 310 (394)
Q Consensus 244 ~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n--~~~~~~~~~l~~~--~~L~~L~l~~n~l~~ 310 (394)
+.+.+..+.|++|++.....+...-...|+|+.|+|++| .+... .++... ..|++|.+.+|++..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCcccc
Confidence 344566666777766543323333334567777777777 22211 122222 356777777777654
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=69.38 E-value=4.8 Score=21.37 Aligned_cols=14 Identities=43% Similarity=0.608 Sum_probs=7.0
Q ss_pred CCCCEEEcCCCcCC
Q 041570 296 TNLEFLNLRHSSLD 309 (394)
Q Consensus 296 ~~L~~L~l~~n~l~ 309 (394)
.+|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555543
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=66.45 E-value=28 Score=33.23 Aligned_cols=65 Identities=20% Similarity=0.009 Sum_probs=40.7
Q ss_pred CCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCc---cchHhhhcCCCCCEEEcCCceee
Q 041570 100 QQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKN---SISSSLARLSSLISLSLSHNKLE 165 (394)
Q Consensus 100 ~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~---~~p~~l~~l~~L~~L~l~~n~l~ 165 (394)
..+.+++++.|.....+|... .....-..++.++.+...+.- .-+-..+.-.++.+.+++.|..+
T Consensus 214 ~~lteldls~n~~Kddip~~~-n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s 281 (553)
T KOG4242|consen 214 LWLTELDLSTNGGKDDIPRTL-NKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTS 281 (553)
T ss_pred ccccccccccCCCCccchhHH-HHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCC
Confidence 468899999998888877632 222333456777777665431 11223344567888888887654
No 90
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=64.91 E-value=3 Score=30.35 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=8.7
Q ss_pred CCCCCchHHHHHHHHHHHHh
Q 041570 1 MGSGSKMVIMLVLSVLLILE 20 (394)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~ 20 (394)
|++.+.+++.++++++++++
T Consensus 1 MaSK~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLIS 20 (95)
T ss_pred CchhHHHHHHHHHHHHHHHH
Confidence 77444333333333444443
No 91
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=62.36 E-value=5.5 Score=21.13 Aligned_cols=17 Identities=35% Similarity=0.448 Sum_probs=10.9
Q ss_pred CCcEEEcCCCCcccCCccccc
Q 041570 346 SLERLDMGGARNALNASFLQI 366 (394)
Q Consensus 346 ~L~~L~l~~~~n~l~~g~l~~ 366 (394)
+|+.|++++ |.++ .+|+
T Consensus 3 ~L~~L~vs~--N~Lt--~LPe 19 (26)
T smart00364 3 SLKELNVSN--NQLT--SLPE 19 (26)
T ss_pred ccceeecCC--Cccc--cCcc
Confidence 566677777 6666 5553
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=61.97 E-value=5.4 Score=38.55 Aligned_cols=14 Identities=36% Similarity=0.370 Sum_probs=6.7
Q ss_pred CCCcEEEccCcccC
Q 041570 195 TTLSELYLSGMGFE 208 (394)
Q Consensus 195 ~~L~~L~l~~~~~~ 208 (394)
..|++|-+.+|++.
T Consensus 270 l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 270 LPLEELVLEGNPLC 283 (585)
T ss_pred CCHHHeeecCCccc
Confidence 34445555555443
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=54.25 E-value=8.3 Score=20.15 Aligned_cols=13 Identities=31% Similarity=0.350 Sum_probs=10.2
Q ss_pred cCCCcEEeccccc
Q 041570 371 MASLKHLSLSYSI 383 (394)
Q Consensus 371 ~~~L~~L~l~~n~ 383 (394)
|++|+.|+|++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 5778888888884
No 94
>PF15240 Pro-rich: Proline-rich
Probab=26.47 E-value=44 Score=27.39 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHhhcc
Q 041570 7 MVIMLVLSVLLILEVGW 23 (394)
Q Consensus 7 ~~~~~~~~~~~~~~~~~ 23 (394)
|+++|+.++|++++.+.
T Consensus 1 MLlVLLSvALLALSSAQ 17 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQ 17 (179)
T ss_pred ChhHHHHHHHHHhhhcc
Confidence 56666666666665554
No 95
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=23.24 E-value=50 Score=17.35 Aligned_cols=11 Identities=45% Similarity=0.528 Sum_probs=4.6
Q ss_pred cCEEEcCCCCC
Q 041570 248 LKRLDLSGVGI 258 (394)
Q Consensus 248 L~~L~l~~n~~ 258 (394)
|++|.|....+
T Consensus 2 LKtL~L~~v~f 12 (26)
T PF07723_consen 2 LKTLHLDSVVF 12 (26)
T ss_pred CeEEEeeEEEE
Confidence 34444444433
No 96
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.60 E-value=73 Score=37.72 Aligned_cols=32 Identities=22% Similarity=0.156 Sum_probs=23.4
Q ss_pred EcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCC
Q 041570 252 DLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFT 285 (394)
Q Consensus 252 ~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 285 (394)
||++|+++.. -+..|..+++|++|+|++|.+.
T Consensus 1 DLSnN~LstL--p~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTI--EEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCcc--ChHHhccCCCceEEEeeCCccc
Confidence 4778888765 3456677788888888888765
Done!