Query 041570
Match_columns 394
No_of_seqs 349 out of 4281
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 14:20:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041570.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041570hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.7E-46 5.8E-51 381.7 23.0 349 24-389 6-385 (768)
2 1ogq_A PGIP-2, polygalacturona 100.0 3.3E-42 1.1E-46 313.8 19.2 291 26-354 2-300 (313)
3 4eco_A Uncharacterized protein 100.0 4.7E-42 1.6E-46 341.7 18.8 342 25-389 25-529 (636)
4 4ecn_A Leucine-rich repeat pro 100.0 6.6E-40 2.3E-44 332.4 23.3 243 24-285 263-632 (876)
5 3rgz_A Protein brassinosteroid 100.0 1.2E-39 4.1E-44 331.3 22.2 308 71-391 318-723 (768)
6 3v47_A TOLL-like receptor 5B a 100.0 2E-38 6.7E-43 304.1 22.8 319 56-390 5-413 (455)
7 2id5_A Lingo-1, leucine rich r 100.0 7.5E-36 2.6E-40 287.9 26.3 312 61-390 13-338 (477)
8 3t6q_A CD180 antigen; protein- 100.0 9.2E-35 3.1E-39 288.5 27.1 300 72-390 255-565 (606)
9 3v47_A TOLL-like receptor 5B a 100.0 4E-34 1.4E-38 274.2 24.2 294 75-389 14-388 (455)
10 3t6q_A CD180 antigen; protein- 100.0 2.2E-33 7.4E-38 278.7 28.1 310 61-388 14-416 (606)
11 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-33 4.9E-38 279.9 26.7 86 71-165 32-117 (606)
12 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.2E-33 7.5E-38 276.0 25.6 165 217-391 350-516 (562)
13 2z7x_B TOLL-like receptor 1, v 100.0 2.4E-33 8.3E-38 273.3 24.5 164 217-390 321-486 (520)
14 2z81_A CD282 antigen, TOLL-lik 100.0 1.8E-33 6.3E-38 275.9 23.3 314 58-390 3-515 (549)
15 4eco_A Uncharacterized protein 100.0 1.3E-33 4.5E-38 280.9 21.9 303 70-390 205-583 (636)
16 3o6n_A APL1; leucine-rich repe 100.0 9.6E-34 3.3E-38 266.1 19.8 288 72-388 46-355 (390)
17 2id5_A Lingo-1, leucine rich r 100.0 6.9E-33 2.4E-37 267.1 24.2 294 75-389 15-313 (477)
18 3vq2_A TLR4, TOLL-like recepto 100.0 8E-33 2.7E-37 274.6 25.3 167 216-390 395-563 (606)
19 3oja_B Anopheles plasmodium-re 100.0 1.4E-32 4.9E-37 271.8 23.8 287 73-388 53-361 (597)
20 3j0a_A TOLL-like receptor 5; m 100.0 9.5E-33 3.2E-37 283.4 22.8 309 59-386 14-376 (844)
21 2z7x_B TOLL-like receptor 1, v 100.0 2.8E-32 9.4E-37 265.8 24.9 295 71-389 21-460 (520)
22 4fcg_A Uncharacterized protein 100.0 1.3E-33 4.4E-38 258.5 14.2 277 24-354 21-310 (328)
23 4ecn_A Leucine-rich repeat pro 100.0 3.1E-32 1.1E-36 276.3 25.0 301 71-390 448-823 (876)
24 1xku_A Decorin; proteoglycan, 100.0 2.8E-31 9.5E-36 243.6 27.3 267 100-383 52-330 (330)
25 2z63_A TOLL-like receptor 4, v 100.0 2.2E-32 7.6E-37 269.4 21.0 168 215-391 368-537 (570)
26 4fmz_A Internalin; leucine ric 100.0 4.8E-31 1.6E-35 243.8 28.7 278 72-385 67-346 (347)
27 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-31 5.5E-36 268.7 27.6 307 73-390 250-627 (680)
28 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-31 4.3E-36 269.5 25.9 297 71-384 25-365 (680)
29 4g8a_A TOLL-like receptor 4; l 100.0 2.2E-31 7.4E-36 265.4 27.2 304 71-390 52-585 (635)
30 3oja_B Anopheles plasmodium-re 100.0 1.5E-31 5.1E-36 264.5 25.4 267 71-360 75-358 (597)
31 4fmz_A Internalin; leucine ric 100.0 1.2E-30 4.2E-35 241.0 29.4 284 70-389 43-328 (347)
32 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.6E-31 5.5E-36 262.7 24.5 295 71-389 52-489 (562)
33 2z63_A TOLL-like receptor 4, v 100.0 1.3E-31 4.3E-36 264.0 21.5 129 71-208 28-162 (570)
34 2ft3_A Biglycan; proteoglycan, 100.0 6.9E-31 2.4E-35 241.2 23.3 266 100-383 54-331 (332)
35 1o6v_A Internalin A; bacterial 100.0 4.9E-30 1.7E-34 246.4 29.7 281 71-386 68-389 (466)
36 1ogq_A PGIP-2, polygalacturona 100.0 5.9E-32 2E-36 246.0 14.8 250 100-386 50-306 (313)
37 1o6v_A Internalin A; bacterial 100.0 1.3E-29 4.4E-34 243.5 30.8 215 124-360 173-388 (466)
38 3bz5_A Internalin-J, INLJ; leu 100.0 4.5E-30 1.6E-34 245.2 26.9 257 97-386 82-353 (457)
39 1xku_A Decorin; proteoglycan, 100.0 4.6E-30 1.6E-34 235.5 25.9 268 100-385 31-306 (330)
40 3o6n_A APL1; leucine-rich repe 100.0 4.2E-30 1.5E-34 241.2 24.9 267 98-387 43-333 (390)
41 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-30 4.1E-35 267.8 22.6 279 99-389 23-355 (844)
42 2z80_A TOLL-like receptor 2, v 100.0 2.3E-31 7.9E-36 246.4 15.1 279 55-365 26-318 (353)
43 2z81_A CD282 antigen, TOLL-lik 100.0 1.7E-30 5.8E-35 254.9 22.0 171 76-260 10-210 (549)
44 3bz5_A Internalin-J, INLJ; leu 100.0 1.2E-29 3.9E-34 242.4 26.9 257 97-386 61-332 (457)
45 2ft3_A Biglycan; proteoglycan, 100.0 5.3E-30 1.8E-34 235.2 22.1 267 100-385 33-307 (332)
46 2z66_A Variable lymphocyte rec 100.0 5.1E-29 1.7E-33 226.1 19.1 275 75-390 11-292 (306)
47 2z66_A Variable lymphocyte rec 100.0 6E-29 2.1E-33 225.6 18.6 252 102-390 9-266 (306)
48 1jl5_A Outer protein YOPM; leu 100.0 5.1E-28 1.7E-32 230.8 24.2 253 100-390 131-416 (454)
49 3o53_A Protein LRIM1, AGAP0063 100.0 4.4E-30 1.5E-34 234.1 9.0 241 96-354 30-271 (317)
50 4g8a_A TOLL-like receptor 4; l 100.0 8.9E-28 3.1E-32 239.3 26.4 282 100-391 52-561 (635)
51 3zyj_A Leucine-rich repeat-con 100.0 1.2E-27 4.3E-32 227.9 24.7 224 100-333 64-292 (440)
52 1z7x_W Ribonuclease inhibitor; 100.0 7.1E-30 2.4E-34 245.0 9.1 312 71-387 56-413 (461)
53 4fcg_A Uncharacterized protein 100.0 1.4E-28 4.8E-33 225.0 15.8 136 242-385 179-314 (328)
54 3o53_A Protein LRIM1, AGAP0063 100.0 1.4E-29 4.9E-34 230.8 9.1 267 102-389 12-280 (317)
55 3zyi_A Leucine-rich repeat-con 100.0 1.6E-27 5.4E-32 228.0 22.9 244 101-360 55-303 (452)
56 3g06_A SSPH2 (leucine-rich rep 100.0 6.2E-28 2.1E-32 237.2 20.3 284 49-390 13-302 (622)
57 3oja_A Leucine-rich immune mol 100.0 8.5E-29 2.9E-33 238.4 13.4 236 100-380 34-270 (487)
58 1ozn_A Reticulon 4 receptor; N 100.0 2.2E-27 7.4E-32 213.1 21.7 247 131-390 14-266 (285)
59 3zyi_A Leucine-rich repeat-con 100.0 4.3E-27 1.5E-31 225.0 24.9 244 74-335 57-305 (452)
60 3zyj_A Leucine-rich repeat-con 100.0 3.2E-27 1.1E-31 225.1 23.7 244 101-360 44-292 (440)
61 1wwl_A Monocyte differentiatio 100.0 2.5E-29 8.6E-34 228.6 7.0 253 97-387 40-311 (312)
62 1z7x_W Ribonuclease inhibitor; 100.0 2.8E-29 9.5E-34 240.9 7.0 308 72-386 29-384 (461)
63 1ozn_A Reticulon 4 receptor; N 100.0 1.6E-27 5.6E-32 213.9 17.5 224 74-335 14-240 (285)
64 3oja_A Leucine-rich immune mol 100.0 4.9E-28 1.7E-32 233.0 13.4 231 72-328 35-270 (487)
65 1jl5_A Outer protein YOPM; leu 99.9 8.3E-26 2.8E-30 215.5 25.7 266 71-389 91-376 (454)
66 1wwl_A Monocyte differentiatio 99.9 7.7E-28 2.6E-32 218.8 8.6 276 48-360 21-309 (312)
67 2z80_A TOLL-like receptor 2, v 99.9 1.6E-26 5.4E-31 214.0 16.7 252 71-337 52-318 (353)
68 2o6q_A Variable lymphocyte rec 99.9 6.5E-25 2.2E-29 195.3 20.3 216 56-310 2-219 (270)
69 2z62_A TOLL-like receptor 4, v 99.9 8.8E-25 3E-29 195.1 19.7 187 194-390 51-242 (276)
70 2o6q_A Variable lymphocyte rec 99.9 2E-24 6.7E-29 192.2 21.0 205 176-389 18-222 (270)
71 1p9a_G Platelet glycoprotein I 99.9 1.1E-24 3.8E-29 195.6 18.9 203 174-389 10-212 (290)
72 3rfs_A Internalin B, repeat mo 99.9 3.7E-25 1.3E-29 197.1 14.1 227 129-373 20-247 (272)
73 3rfs_A Internalin B, repeat mo 99.9 7.5E-25 2.6E-29 195.1 15.8 208 124-346 37-247 (272)
74 3g06_A SSPH2 (leucine-rich rep 99.9 9.9E-24 3.4E-28 207.4 23.8 248 71-372 61-308 (622)
75 2ca6_A RAN GTPase-activating p 99.9 1.1E-25 3.6E-30 210.9 7.5 240 119-360 23-316 (386)
76 2ca6_A RAN GTPase-activating p 99.9 2.4E-25 8.2E-30 208.5 8.2 259 96-354 28-339 (386)
77 2ast_B S-phase kinase-associat 99.9 1.6E-25 5.5E-30 205.7 6.4 234 58-330 36-282 (336)
78 2ast_B S-phase kinase-associat 99.9 1.2E-24 4.1E-29 199.8 12.0 250 128-391 47-312 (336)
79 2z62_A TOLL-like receptor 4, v 99.9 1.4E-23 4.9E-28 187.2 18.4 204 128-360 28-237 (276)
80 1p9a_G Platelet glycoprotein I 99.9 1E-22 3.6E-27 182.7 21.5 201 96-309 6-208 (290)
81 3ogk_B Coronatine-insensitive 99.9 1.9E-25 6.6E-30 220.8 3.9 208 174-387 293-528 (592)
82 3goz_A Leucine-rich repeat-con 99.9 7.9E-25 2.7E-29 203.1 7.7 248 104-360 2-297 (362)
83 4glp_A Monocyte differentiatio 99.9 3E-24 1E-28 194.9 10.5 230 128-386 64-308 (310)
84 1h6u_A Internalin H; cell adhe 99.9 5.1E-22 1.8E-26 179.9 18.6 193 97-333 38-230 (308)
85 3ogk_B Coronatine-insensitive 99.9 9.6E-24 3.3E-28 208.7 6.7 285 98-387 162-503 (592)
86 3goz_A Leucine-rich repeat-con 99.9 1.8E-23 6.3E-28 193.9 8.1 257 76-338 3-302 (362)
87 1h6u_A Internalin H; cell adhe 99.9 7.6E-22 2.6E-26 178.8 18.3 207 132-360 23-230 (308)
88 3m19_A Variable lymphocyte rec 99.9 9.2E-22 3.2E-26 172.9 18.0 179 174-360 14-192 (251)
89 4glp_A Monocyte differentiatio 99.9 4.8E-22 1.6E-26 180.4 13.6 225 100-334 64-308 (310)
90 3m19_A Variable lymphocyte rec 99.9 4.2E-21 1.4E-25 168.7 19.0 178 152-335 14-194 (251)
91 2xwt_C Thyrotropin receptor; s 99.9 9.5E-22 3.2E-26 171.6 13.7 175 193-382 53-236 (239)
92 2p1m_B Transport inhibitor res 99.9 2E-22 6.8E-27 199.3 6.1 207 173-386 288-520 (594)
93 2xwt_C Thyrotropin receptor; s 99.9 3.8E-21 1.3E-25 167.8 13.4 62 101-166 32-95 (239)
94 2o6s_A Variable lymphocyte rec 99.9 5.6E-21 1.9E-25 163.0 13.8 180 178-373 11-190 (208)
95 2o6s_A Variable lymphocyte rec 99.8 3.1E-20 1E-24 158.4 14.0 174 198-390 10-183 (208)
96 3cvr_A Invasion plasmid antige 99.8 3.2E-20 1.1E-24 180.4 15.5 186 153-370 60-252 (571)
97 3cvr_A Invasion plasmid antige 99.8 5.4E-20 1.9E-24 178.8 17.0 183 174-390 59-248 (571)
98 2p1m_B Transport inhibitor res 99.8 3.7E-22 1.3E-26 197.4 1.7 304 71-387 105-496 (594)
99 1m9s_A Internalin B; cell inva 99.8 8.7E-20 3E-24 179.2 16.2 172 125-311 40-212 (605)
100 4ay9_X Follicle-stimulating ho 99.8 1.4E-19 4.9E-24 166.9 15.9 233 76-330 14-256 (350)
101 1h6t_A Internalin B; cell adhe 99.8 3.6E-19 1.2E-23 159.7 17.9 184 157-360 29-213 (291)
102 2v70_A SLIT-2, SLIT homolog 2 99.8 1.3E-19 4.4E-24 155.8 13.6 153 198-360 14-166 (220)
103 2v9t_B SLIT homolog 2 protein 99.8 2.7E-19 9.2E-24 153.8 14.1 148 198-354 14-161 (220)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 6.9E-19 2.4E-23 151.2 15.8 156 178-337 15-170 (220)
105 3e6j_A Variable lymphocyte rec 99.8 6.1E-19 2.1E-23 152.6 15.3 133 220-360 40-172 (229)
106 2xot_A Amphoterin-induced prot 99.8 2.1E-19 7.2E-24 166.4 13.2 180 198-390 21-207 (361)
107 1m9s_A Internalin B; cell inva 99.8 6.5E-19 2.2E-23 173.0 16.6 191 128-335 21-212 (605)
108 4ezg_A Putative uncharacterize 99.8 3E-19 1E-23 150.8 12.1 155 217-386 41-195 (197)
109 1h6t_A Internalin B; cell adhe 99.8 6.7E-19 2.3E-23 158.0 14.4 189 129-334 25-214 (291)
110 4ay9_X Follicle-stimulating ho 99.8 9.3E-19 3.2E-23 161.4 13.1 235 131-382 12-256 (350)
111 4b8c_D Glucose-repressible alc 99.8 2.2E-20 7.7E-25 187.7 1.9 226 27-314 129-359 (727)
112 2v9t_B SLIT homolog 2 protein 99.8 4.8E-18 1.6E-22 145.9 14.7 153 177-334 14-166 (220)
113 2xot_A Amphoterin-induced prot 99.8 2.2E-18 7.6E-23 159.5 13.4 174 155-334 21-203 (361)
114 3e6j_A Variable lymphocyte rec 99.8 1.6E-17 5.4E-22 143.6 16.2 155 176-336 21-175 (229)
115 1dce_A Protein (RAB geranylger 99.8 7.6E-21 2.6E-25 185.6 -6.0 203 125-352 346-567 (567)
116 4ezg_A Putative uncharacterize 99.8 7.4E-18 2.5E-22 142.3 13.1 152 193-360 42-194 (197)
117 1xeu_A Internalin C; cellular 99.7 2.9E-18 1E-22 151.4 9.5 171 169-360 14-185 (263)
118 1dce_A Protein (RAB geranylger 99.7 1.1E-20 3.8E-25 184.4 -7.5 122 247-379 442-567 (567)
119 1w8a_A SLIT protein; signaling 99.7 1E-17 3.5E-22 140.7 11.0 132 223-365 11-143 (192)
120 1xeu_A Internalin C; cellular 99.7 1.4E-17 4.8E-22 147.1 9.1 170 150-335 17-187 (263)
121 2je0_A Acidic leucine-rich nuc 99.7 1.1E-16 3.8E-21 128.6 9.7 126 247-380 18-148 (149)
122 3sb4_A Hypothetical leucine ri 99.7 4.3E-16 1.5E-20 142.3 14.2 261 99-379 24-328 (329)
123 2je0_A Acidic leucine-rich nuc 99.7 2.7E-16 9.3E-21 126.3 11.2 129 220-353 17-148 (149)
124 1w8a_A SLIT protein; signaling 99.7 4.5E-16 1.5E-20 130.6 12.7 114 221-337 30-143 (192)
125 2o6r_A Variable lymphocyte rec 99.7 3.9E-16 1.3E-20 129.3 12.1 128 223-360 10-137 (177)
126 2ell_A Acidic leucine-rich nuc 99.7 1.2E-16 4.1E-21 131.2 8.6 135 219-360 23-160 (168)
127 2ell_A Acidic leucine-rich nuc 99.7 2.9E-16 1E-20 128.8 10.1 138 193-338 22-164 (168)
128 2wfh_A SLIT homolog 2 protein 99.7 4.4E-16 1.5E-20 130.7 11.3 127 223-360 13-139 (193)
129 4b8c_D Glucose-repressible alc 99.6 5.2E-17 1.8E-21 163.3 3.2 188 174-382 173-369 (727)
130 2o6r_A Variable lymphocyte rec 99.6 1.3E-14 4.5E-19 120.0 14.9 131 177-312 10-140 (177)
131 1a9n_A U2A', U2A'; complex (nu 99.6 1.7E-15 5.9E-20 125.2 8.9 129 216-354 15-149 (176)
132 2wfh_A SLIT homolog 2 protein 99.6 9.6E-15 3.3E-19 122.5 13.1 128 198-334 13-140 (193)
133 3sb4_A Hypothetical leucine ri 99.6 2.3E-15 7.7E-20 137.5 8.9 103 245-352 225-328 (329)
134 1a9n_A U2A', U2A'; complex (nu 99.5 1.4E-14 4.8E-19 119.7 8.9 104 273-383 43-151 (176)
135 4fdw_A Leucine rich hypothetic 99.5 7.8E-13 2.7E-17 123.5 21.7 263 97-384 110-382 (401)
136 3g39_A Variable lymphocyte rec 99.5 9.5E-14 3.2E-18 113.9 9.3 106 247-360 10-115 (170)
137 4fdw_A Leucine rich hypothetic 99.5 2.5E-12 8.4E-17 120.1 19.5 247 91-360 127-383 (401)
138 1ds9_A Outer arm dynein; leuci 99.5 2E-16 6.7E-21 133.6 -8.1 150 193-351 16-180 (198)
139 1ds9_A Outer arm dynein; leuci 99.5 3.8E-16 1.3E-20 131.8 -6.5 151 217-378 15-180 (198)
140 2r9u_A Variable lymphocyte rec 99.4 2.7E-13 9.1E-18 111.6 9.6 105 248-360 14-118 (174)
141 3g39_A Variable lymphocyte rec 99.4 5.8E-13 2E-17 109.2 10.5 109 222-337 11-119 (170)
142 2r9u_A Variable lymphocyte rec 99.4 9.8E-13 3.4E-17 108.2 10.6 107 222-335 14-120 (174)
143 3un9_A NLR family member X1; l 99.4 4.7E-14 1.6E-18 130.5 2.2 158 174-333 72-252 (372)
144 3un9_A NLR family member X1; l 99.4 1.1E-13 3.7E-18 128.1 3.1 189 193-387 70-285 (372)
145 2ifg_A High affinity nerve gro 99.3 7E-12 2.4E-16 115.1 8.2 103 224-333 12-116 (347)
146 2ifg_A High affinity nerve gro 99.3 1.5E-11 5E-16 113.0 10.0 104 249-360 11-116 (347)
147 4fs7_A Uncharacterized protein 99.2 1.2E-09 4E-14 102.1 20.7 132 237-382 244-376 (394)
148 4fs7_A Uncharacterized protein 99.1 2.4E-09 8.1E-14 100.0 17.6 263 94-382 65-353 (394)
149 4gt6_A Cell surface protein; l 99.1 1.8E-08 6.1E-13 94.0 20.9 130 241-383 260-389 (394)
150 2ra8_A Uncharacterized protein 99.0 6.2E-10 2.1E-14 102.1 9.6 67 245-313 251-324 (362)
151 4gt6_A Cell surface protein; l 99.0 7E-08 2.4E-12 89.9 23.3 109 266-383 259-368 (394)
152 2ra8_A Uncharacterized protein 99.0 1.9E-10 6.6E-15 105.5 5.1 160 144-307 164-341 (362)
153 1io0_A Tropomodulin; LRR prote 98.9 2.5E-09 8.7E-14 88.6 7.4 116 267-385 31-164 (185)
154 4h09_A Hypothetical leucine ri 98.8 6.7E-07 2.3E-11 82.8 22.5 129 217-354 214-342 (379)
155 1io0_A Tropomodulin; LRR prote 98.8 7.5E-09 2.6E-13 85.7 7.0 113 244-359 34-163 (185)
156 4h09_A Hypothetical leucine ri 98.6 1.1E-05 3.9E-10 74.4 22.6 282 72-382 47-343 (379)
157 3rw6_A Nuclear RNA export fact 98.4 4.9E-08 1.7E-12 85.0 1.7 80 270-351 168-257 (267)
158 3rw6_A Nuclear RNA export fact 98.4 3.6E-07 1.2E-11 79.5 6.4 82 244-326 168-257 (267)
159 3e4g_A ATP synthase subunit S, 98.4 2.2E-07 7.6E-12 75.1 4.5 82 247-330 62-149 (176)
160 3e4g_A ATP synthase subunit S, 98.3 6.1E-07 2.1E-11 72.6 5.5 87 272-360 61-153 (176)
161 1pgv_A TMD-1, tropomodulin TMD 98.1 1.1E-05 3.8E-10 66.4 8.5 115 269-383 38-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.9 1.2E-05 4.1E-10 66.2 5.8 109 245-354 40-166 (197)
163 3rfe_A Platelet glycoprotein I 96.6 0.0036 1.2E-07 47.9 5.7 55 250-309 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.5 0.0044 1.5E-07 47.4 5.8 57 275-333 11-68 (130)
165 2lz0_A Uncharacterized protein 39.4 39 0.0013 23.7 4.2 39 214-255 14-52 (100)
166 2lz0_A Uncharacterized protein 37.4 30 0.001 24.3 3.4 38 267-305 15-52 (100)
167 1skh_A Major prion protein 2; 21.5 1E+02 0.0034 16.2 2.7 19 1-19 1-19 (30)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.7e-46 Score=381.74 Aligned_cols=349 Identities=24% Similarity=0.260 Sum_probs=223.1
Q ss_pred CCccCHHHHHHHHHhhhhcCCCCCCCCCCCCCCCCCccceeEecCCCCcEEEEecCCCCCCCCCCCcccc----------
Q 041570 24 SEGCLEHERFALLRLRHFFSSPSRLQNWEDEQGDFCQWESVECSNTTGRVIGLDLSDTRNEDLGEGYLNA---------- 93 (394)
Q Consensus 24 ~~~~~~~~~~al~~~~~~~~~~~~~~~W~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~l~~---------- 93 (394)
++++.++|++||++||+++.+|..+++|.. +.+||.|.||+|+ .++|+++++++.++..... .+++
T Consensus 6 ~~~~~~~~~~all~~k~~~~~~~~l~~W~~-~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~-~l~~~l~~L~~L~~ 81 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLPDKNLLPDWSS-NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFS-AVSSSLLSLTGLES 81 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCSCTTSSTTCCT-TSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHH-HHHHHTTTCTTCCE
T ss_pred cccCCHHHHHHHHHHHhhCCCcccccCCCC-CCCCcCCcceEEC--CCcEEEEECCCCCcCCccC-ccChhHhccCcccc
Confidence 355578899999999999998777889974 7799999999997 6899999999987643100 0111
Q ss_pred ------------ccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhh-hcCCCCCEEEcC
Q 041570 94 ------------FLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSL-ARLSSLISLSLS 160 (394)
Q Consensus 94 ------------~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l-~~l~~L~~L~l~ 160 (394)
..+..+++|++|+|++|.++|.+|.. ..++++++|++|++++|.+.+.+|..+ .++++|++|+++
T Consensus 82 l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls 159 (768)
T 3rgz_A 82 LFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTL--TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159 (768)
T ss_dssp EECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGG--GGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECC
T ss_pred cCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCCh--HHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECC
Confidence 23455666666666666666555431 125556666666666665555555443 455555566665
Q ss_pred Cceeecccc-----ccCCCCCCEEEcCCCCCCccccc-cCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCC
Q 041570 161 HNKLEGSIE-----VKGSSKLQSLDLSHNNLNRIILS-SLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGIN 234 (394)
Q Consensus 161 ~n~l~~~~~-----~~~~~~L~~L~l~~n~l~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 234 (394)
+|.+++..+ +..+++|++|++++|.+.+..+. .+++|++|++++|.+.+.++ . ++++++|++|++++|.+.
T Consensus 160 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~-l~~l~~L~~L~Ls~n~l~- 236 (768)
T 3rgz_A 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP-F-LGDCSALQHLDISGNKLS- 236 (768)
T ss_dssp SSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCC-B-CTTCCSCCEEECCSSCCC-
T ss_pred CCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCc-c-cccCCCCCEEECcCCcCC-
Confidence 555555443 34445555555555555554433 55666666666666665554 2 566666666666666655
Q ss_pred CcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCC-CCCCEEEcCCCcCChhhh
Q 041570 235 NFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNF-TNLEFLNLRHSSLDINLL 313 (394)
Q Consensus 235 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~ 313 (394)
+.++. .+..+++|++|++++|.+++. +|.. .+++|++|++++|.+++.+|..+... ++|++|++++|.+++.+|
T Consensus 237 ~~~~~-~l~~l~~L~~L~Ls~n~l~~~--~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p 311 (768)
T 3rgz_A 237 GDFSR-AISTCTELKLLNISSNQFVGP--IPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311 (768)
T ss_dssp SCHHH-HTTTCSSCCEEECCSSCCEES--CCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC
T ss_pred CcccH-HHhcCCCCCEEECCCCcccCc--cCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccc
Confidence 44443 556666666666666665544 3322 45566666666666665666665553 777777777777777777
Q ss_pred hchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccccccccccC-CCcEEeccccccceeEe
Q 041570 314 KTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMA-SLKHLSLSYSILNANCT 389 (394)
Q Consensus 314 ~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~-~L~~L~l~~n~l~g~~~ 389 (394)
..++++++|++|++++|.++|.+|...+..+++|++|++++ |.++ |.+|..+..++ +|++|++++|+++|.+|
T Consensus 312 ~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~--n~l~-~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~ 385 (768)
T 3rgz_A 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF--NEFS-GELPESLTNLSASLLTLDLSSNNFSGPIL 385 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS--SEEE-ECCCTTHHHHTTTCSEEECCSSEEEEECC
T ss_pred hHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC--CccC-ccccHHHHhhhcCCcEEEccCCCcCCCcC
Confidence 77777777777777777777777764467777777777777 7776 67776666665 66666666666666554
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.3e-42 Score=313.76 Aligned_cols=291 Identities=21% Similarity=0.344 Sum_probs=183.2
Q ss_pred ccCHHHHHHHHHhhhhcCCCCCCCCCCCCCCCCCc--cceeEecCCC--CcEEEEecCCCCCCCCCCCccccccCCCCCC
Q 041570 26 GCLEHERFALLRLRHFFSSPSRLQNWEDEQGDFCQ--WESVECSNTT--GRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQ 101 (394)
Q Consensus 26 ~~~~~~~~al~~~~~~~~~~~~~~~W~~~~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~ 101 (394)
.|.++|++||++||+++.+|..+.+|.. +.+||. |.||+|+... ++|+.++++++++... ..++ ..+..+++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~-~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~--~~~~-~~l~~l~~ 77 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWLP-TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP--YPIP-SSLANLPY 77 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCT-TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSC--EECC-GGGGGCTT
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCCC-CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCC--cccC-hhHhCCCC
Confidence 5899999999999999988767789975 678998 9999998544 7899999988877420 0111 23566777
Q ss_pred CCEEeccC-CcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeecccc--ccCCCCCCE
Q 041570 102 LESLILSN-NSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIE--VKGSSKLQS 178 (394)
Q Consensus 102 L~~L~l~~-~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~ 178 (394)
|++|++++ |.+.+.+|.. ++++++|++|++++|.+++.+|..+.++++|++|++++|.+++.+| +..+
T Consensus 78 L~~L~L~~~n~l~~~~p~~----l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l----- 148 (313)
T 1ogq_A 78 LNFLYIGGINNLVGPIPPA----IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL----- 148 (313)
T ss_dssp CSEEEEEEETTEESCCCGG----GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC-----
T ss_pred CCeeeCCCCCcccccCChh----HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC-----
Confidence 77777774 7777666654 6677777777777777777777777777777777777777765443 2222
Q ss_pred EEcCCCCCCccccccCCCCcEEEccCcccCCccChhhhcCCC-CCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCC
Q 041570 179 LDLSHNNLNRIILSSLTTLSELYLSGMGFEGTFDVQEFDSLS-NLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVG 257 (394)
Q Consensus 179 L~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~ 257 (394)
++|++|++++|.+++.+| ..++.++ +|++|++++|.+. +.++. .+..++ |++|++++|.
T Consensus 149 ----------------~~L~~L~L~~N~l~~~~p-~~l~~l~~~L~~L~L~~N~l~-~~~~~-~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 149 ----------------PNLVGITFDGNRISGAIP-DSYGSFSKLFTSMTISRNRLT-GKIPP-TFANLN-LAFVDLSRNM 208 (313)
T ss_dssp ----------------TTCCEEECCSSCCEEECC-GGGGCCCTTCCEEECCSSEEE-EECCG-GGGGCC-CSEEECCSSE
T ss_pred ----------------CCCCeEECcCCcccCcCC-HHHhhhhhcCcEEECcCCeee-ccCCh-HHhCCc-ccEEECcCCc
Confidence 333333333333333444 4455555 6666666666655 34443 444444 6666666666
Q ss_pred CCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeec
Q 041570 258 IRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLD 337 (394)
Q Consensus 258 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip 337 (394)
+++. .|..+..+++|++|++++|.+++.+|. +..+++|++|++++|.+++.+|..+..+++|++|++++|.++|.+|
T Consensus 209 l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 209 LEGD--ASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp EEEC--CGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred ccCc--CCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence 5554 555555556666666666665554443 4555555666666555555555555555555555555555555555
Q ss_pred hhhccCCCCCcEEEcCC
Q 041570 338 GQGFLNFKSLERLDMGG 354 (394)
Q Consensus 338 ~~~~~~~~~L~~L~l~~ 354 (394)
. . ..+++|+.+++++
T Consensus 286 ~-~-~~l~~L~~l~l~~ 300 (313)
T 1ogq_A 286 Q-G-GNLQRFDVSAYAN 300 (313)
T ss_dssp C-S-TTGGGSCGGGTCS
T ss_pred C-C-ccccccChHHhcC
Confidence 5 2 4455555555555
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.7e-42 Score=341.65 Aligned_cols=342 Identities=15% Similarity=0.210 Sum_probs=246.0
Q ss_pred CccCHHHHHHHHHhhhhcCCCC-C--------CCCCCCCCCCCCcc---ceeEecCCCCcEEEEecCCCCCCCCCCCccc
Q 041570 25 EGCLEHERFALLRLRHFFSSPS-R--------LQNWEDEQGDFCQW---ESVECSNTTGRVIGLDLSDTRNEDLGEGYLN 92 (394)
Q Consensus 25 ~~~~~~~~~al~~~~~~~~~~~-~--------~~~W~~~~~~~c~w---~gv~c~~~~~~v~~l~l~~~~~~~~~~~~l~ 92 (394)
.+....|++||.+++.++.++. . ..+|.. +.++|.| .||+|+. .+||++|+|+++++.. .++
T Consensus 25 ~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~-~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~g----~lp 98 (636)
T 4eco_A 25 TAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF-NKELDMWGAQPGVSLNS-NGRVTGLSLEGFGASG----RVP 98 (636)
T ss_dssp CCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCC-SSCGGGTTCCTTEEECT-TCCEEEEECTTSCCEE----EEC
T ss_pred hhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCC-CCCcccccCCCCeEEcC-CCCEEEEEecCcccCC----cCC
Confidence 3445679999999999988765 2 237975 6899999 9999984 4899999999998742 233
Q ss_pred cccCCCCCCCCEEeccCCcC------CC----------------------------------------------------
Q 041570 93 AFLFTPFQQLESLILSNNSI------AG---------------------------------------------------- 114 (394)
Q Consensus 93 ~~~~~~l~~L~~L~l~~~~l------~~---------------------------------------------------- 114 (394)
..++.+++|++|+|++|.+ .+
T Consensus 99 -~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~ 177 (636)
T 4eco_A 99 -DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK 177 (636)
T ss_dssp -GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC
T ss_pred -hHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccc
Confidence 3578999999999998854 11
Q ss_pred ----------------ccccchhhhhcCCCCCcEEEcccccCCcc-----------------chHhhh--cCCCCCEEEc
Q 041570 115 ----------------CVENEGLEMLSRLSNLKFLDLRMNLFKNS-----------------ISSSLA--RLSSLISLSL 159 (394)
Q Consensus 115 ----------------~~~~~~~~~l~~l~~L~~L~L~~n~~~~~-----------------~p~~l~--~l~~L~~L~l 159 (394)
.+.. +...++++++|++|+|++|.+++. +|..++ ++++|++|++
T Consensus 178 ~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L 256 (636)
T 4eco_A 178 SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256 (636)
T ss_dssp CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEe
Confidence 0000 223488899999999999999986 899988 9999999999
Q ss_pred CCceeecccc--ccCCCCCCEEEcCCCC-CCc-cccc---cC------CCCcEEEccCcccCCccChh--hhcCCCCCCE
Q 041570 160 SHNKLEGSIE--VKGSSKLQSLDLSHNN-LNR-IILS---SL------TTLSELYLSGMGFEGTFDVQ--EFDSLSNLEE 224 (394)
Q Consensus 160 ~~n~l~~~~~--~~~~~~L~~L~l~~n~-l~~-~~~~---~l------~~L~~L~l~~~~~~~~~~~~--~~~~l~~L~~ 224 (394)
++|.+.+.+| +..+++|++|++++|+ +++ .+|. .+ ++|++|++++|.++ .+| . .++++++|++
T Consensus 257 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip-~~~~l~~l~~L~~ 334 (636)
T 4eco_A 257 YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFP-VETSLQKMKKLGM 334 (636)
T ss_dssp ECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCC-CHHHHTTCTTCCE
T ss_pred cCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccC-chhhhccCCCCCE
Confidence 9999998888 6778999999999998 988 6665 33 89999999999998 777 5 7899999999
Q ss_pred EECCCCCCCCCcccCcCCCCCCC------------------------cCEEEcCCCCCCCChhhhhhcCCCC--CCCEEe
Q 041570 225 LYLSNNKGINNFVVPQDYRGLSK------------------------LKRLDLSGVGIRDGSELLRSMGSFP--SLKTLF 278 (394)
Q Consensus 225 L~l~~n~~~~~~~~~~~~~~l~~------------------------L~~L~l~~n~~~~~~~~~~~l~~~~--~L~~L~ 278 (394)
|++++|.+. |.+| .+..+++ |++|++++|.++. +|..+...+ +|++|+
T Consensus 335 L~L~~N~l~-g~ip--~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~---lp~~~~~~~l~~L~~L~ 408 (636)
T 4eco_A 335 LECLYNQLE-GKLP--AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY---IPNIFDAKSVSVMSAID 408 (636)
T ss_dssp EECCSCCCE-EECC--CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS---CCSCCCTTCSSCEEEEE
T ss_pred EeCcCCcCc-cchh--hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcc---cchhhhhcccCccCEEE
Confidence 999999887 5665 4444444 4455555544442 344433322 455555
Q ss_pred CcCCCCCccchhhcC-------CCCCCCEEEcCCCcCChhhhhc-hhccCCCCeEecCCcccceeechhhccCCC-----
Q 041570 279 LEANNFTATTTQELH-------NFTNLEFLNLRHSSLDINLLKT-IASFTSLKNLSMVSCEVNGVLDGQGFLNFK----- 345 (394)
Q Consensus 279 l~~n~~~~~~~~~l~-------~~~~L~~L~l~~n~l~~~~~~~-l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~----- 345 (394)
+++|.+++..|..+. .+++|+.|++++|.++ .+|.. +..+++|++|++++|.++ .+|...+....
T Consensus 409 Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~ 486 (636)
T 4eco_A 409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKN 486 (636)
T ss_dssp CCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTT
T ss_pred CcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccc
Confidence 555555555555555 4556666666666666 33333 344667777777777776 66653333222
Q ss_pred --CCcEEEcCCCCcccCCcccccccc--ccCCCcEEeccccccceeEe
Q 041570 346 --SLERLDMGGARNALNASFLQIIGE--SMASLKHLSLSYSILNANCT 389 (394)
Q Consensus 346 --~L~~L~l~~~~n~l~~g~l~~~~~--~~~~L~~L~l~~n~l~g~~~ 389 (394)
+|++|++++ |.++ .+|..+. .+++|+.|++++|++++ +|
T Consensus 487 l~~L~~L~Ls~--N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip 529 (636)
T 4eco_A 487 TYLLTSIDLRF--NKLT--KLSDDFRATTLPYLVGIDLSYNSFSK-FP 529 (636)
T ss_dssp GGGCCEEECCS--SCCC--BCCGGGSTTTCTTCCEEECCSSCCSS-CC
T ss_pred cCCccEEECcC--CcCC--ccChhhhhccCCCcCEEECCCCCCCC-cC
Confidence 777777777 7776 6776665 77888888888888877 54
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.6e-40 Score=332.38 Aligned_cols=243 Identities=18% Similarity=0.231 Sum_probs=178.3
Q ss_pred CCccCHHHHHHHHHhhhhcCCCCCCCCCCCCC----CCC--Ccc------------ceeEecCCCCcEEEEecCCCCCCC
Q 041570 24 SEGCLEHERFALLRLRHFFSSPSRLQNWEDEQ----GDF--CQW------------ESVECSNTTGRVIGLDLSDTRNED 85 (394)
Q Consensus 24 ~~~~~~~~~~al~~~~~~~~~~~~~~~W~~~~----~~~--c~w------------~gv~c~~~~~~v~~l~l~~~~~~~ 85 (394)
.+++..+|+.||++||+++.+| +|...+ .++ |.| .||.|+. .+||++|+|+++++..
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G 337 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKG 337 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEE
T ss_pred ccccchHHHHHHHHHHHHcCCC----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCC
Confidence 3456678999999999999876 565322 355 999 9999984 7899999999998742
Q ss_pred CCCCccccccCCCCCCCCEEec-cCCcCCCccccc---------------------------------------------
Q 041570 86 LGEGYLNAFLFTPFQQLESLIL-SNNSIAGCVENE--------------------------------------------- 119 (394)
Q Consensus 86 ~~~~~l~~~~~~~l~~L~~L~l-~~~~l~~~~~~~--------------------------------------------- 119 (394)
.++ ..++.+++|++|+| ++|.++|..+-.
T Consensus 338 ----~ip-~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~ 412 (876)
T 4ecn_A 338 ----RVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP 412 (876)
T ss_dssp ----EEC-GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCT
T ss_pred ----cCc-hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCc
Confidence 233 34678888888888 666554431100
Q ss_pred ---------------------------hhhhhcCCCCCcEEEcccccCCc-----------------cchHhhh--cCCC
Q 041570 120 ---------------------------GLEMLSRLSNLKFLDLRMNLFKN-----------------SISSSLA--RLSS 153 (394)
Q Consensus 120 ---------------------------~~~~l~~l~~L~~L~L~~n~~~~-----------------~~p~~l~--~l~~ 153 (394)
+...++++++|++|+|++|.+++ .+|..++ ++++
T Consensus 413 ~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~ 492 (876)
T 4ecn_A 413 EMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKD 492 (876)
T ss_dssp TSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT
T ss_pred cccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCC
Confidence 22347788888888888888887 3788776 8888
Q ss_pred CCEEEcCCceeecccc--ccCCCCCCEEEcCCCC-CCc-cccc----------cCCCCcEEEccCcccCCccChh--hhc
Q 041570 154 LISLSLSHNKLEGSIE--VKGSSKLQSLDLSHNN-LNR-IILS----------SLTTLSELYLSGMGFEGTFDVQ--EFD 217 (394)
Q Consensus 154 L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~-l~~-~~~~----------~l~~L~~L~l~~~~~~~~~~~~--~~~ 217 (394)
|++|++++|.+.+.+| +..+++|++|++++|+ +++ .+|. .+++|++|++++|.++ .+| . .++
T Consensus 493 L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip-~~~~l~ 570 (876)
T 4ecn_A 493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFP-ASASLQ 570 (876)
T ss_dssp CCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCC-CHHHHT
T ss_pred CCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccC-Chhhhh
Confidence 8888888888888777 6677888888888887 887 5554 2348888888888887 676 4 788
Q ss_pred CCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCC-CCEEeCcCCCCC
Q 041570 218 SLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPS-LKTLFLEANNFT 285 (394)
Q Consensus 218 ~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~-L~~L~l~~n~~~ 285 (394)
++++|++|++++|.+. .+| .+..+++|++|++++|.++ . +|..+..+++ |++|++++|.++
T Consensus 571 ~L~~L~~L~Ls~N~l~--~lp--~~~~L~~L~~L~Ls~N~l~-~--lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 571 KMVKLGLLDCVHNKVR--HLE--AFGTNVKLTDLKLDYNQIE-E--IPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp TCTTCCEEECTTSCCC--BCC--CCCTTSEESEEECCSSCCS-C--CCTTSCEECTTCCEEECCSSCCC
T ss_pred cCCCCCEEECCCCCcc--cch--hhcCCCcceEEECcCCccc-c--chHHHhhccccCCEEECcCCCCC
Confidence 8888888888888775 455 5667777777777777666 2 5656666666 666666666655
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-39 Score=331.35 Aligned_cols=308 Identities=26% Similarity=0.273 Sum_probs=258.7
Q ss_pred CcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhh---------------------hcC--C
Q 041570 71 GRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEM---------------------LSR--L 127 (394)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~---------------------l~~--l 127 (394)
..++.++++++.+.. .++...+..+++|++|++++|.+++.+|...... +.. +
T Consensus 318 ~~L~~L~L~~n~l~~----~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 393 (768)
T 3rgz_A 318 SLLESLALSSNNFSG----ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393 (768)
T ss_dssp TTCCEEECCSSEEEE----ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTT
T ss_pred CCccEEECCCCcccC----cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhccc
Confidence 357778888776531 1223335566666666666666665555432111 222 5
Q ss_pred CCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeecccc--ccCCCCCCEEEcCCCCCCccccc---cCCCCcEEEc
Q 041570 128 SNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIE--VKGSSKLQSLDLSHNNLNRIILS---SLTTLSELYL 202 (394)
Q Consensus 128 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~---~l~~L~~L~l 202 (394)
++|++|++++|.+++.+|..++++++|++|++++|.+++.+| +..+++|++|++++|.+.+.+|. .+++|++|++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence 678888888888888888889999999999999999988776 67789999999999999988776 7889999999
Q ss_pred cCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCC
Q 041570 203 SGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEAN 282 (394)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n 282 (394)
++|.+++.+| ..++++++|++|++++|++. +.+|. .+..+++|++|++++|.+++. +|..+..+++|++|++++|
T Consensus 474 ~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~-~~~p~-~~~~l~~L~~L~L~~N~l~~~--~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 474 DFNDLTGEIP-SGLSNCTNLNWISLSNNRLT-GEIPK-WIGRLENLAILKLSNNSFSGN--IPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp CSSCCCSCCC-GGGGGCTTCCEEECCSSCCC-SCCCG-GGGGCTTCCEEECCSSCCEEE--CCGGGGGCTTCCEEECCSS
T ss_pred cCCcccCcCC-HHHhcCCCCCEEEccCCccC-CcCCh-HHhcCCCCCEEECCCCcccCc--CCHHHcCCCCCCEEECCCC
Confidence 9999998888 78999999999999999988 67765 788999999999999999987 8889999999999999999
Q ss_pred CCCccchhhc----------------------------------------------------------------------
Q 041570 283 NFTATTTQEL---------------------------------------------------------------------- 292 (394)
Q Consensus 283 ~~~~~~~~~l---------------------------------------------------------------------- 292 (394)
.++|.+|..+
T Consensus 549 ~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~ 628 (768)
T 3rgz_A 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628 (768)
T ss_dssp EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh
Confidence 9887766543
Q ss_pred CCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccccccccccC
Q 041570 293 HNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMA 372 (394)
Q Consensus 293 ~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~ 372 (394)
..+++|+.|++++|.++|.+|..++.+++|+.|++++|.++|.+|. .++.+++|+.||+++ |.++ |.+|..+..++
T Consensus 629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~-~l~~L~~L~~LdLs~--N~l~-g~ip~~l~~l~ 704 (768)
T 3rgz_A 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD-EVGDLRGLNILDLSS--NKLD-GRIPQAMSALT 704 (768)
T ss_dssp SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCS--SCCE-ECCCGGGGGCC
T ss_pred hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh-HHhCCCCCCEEECCC--Cccc-CcCChHHhCCC
Confidence 2346789999999999999999999999999999999999999999 899999999999999 9999 99999999999
Q ss_pred CCcEEeccccccceeEeec
Q 041570 373 SLKHLSLSYSILNANCTIL 391 (394)
Q Consensus 373 ~L~~L~l~~n~l~g~~~~~ 391 (394)
+|++|++++|+++|.||..
T Consensus 705 ~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 705 MLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CCSEEECCSSEEEEECCSS
T ss_pred CCCEEECcCCcccccCCCc
Confidence 9999999999999999964
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2e-38 Score=304.13 Aligned_cols=319 Identities=23% Similarity=0.272 Sum_probs=261.1
Q ss_pred CCCCccce--eEecCC--------CCcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhc
Q 041570 56 GDFCQWES--VECSNT--------TGRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLS 125 (394)
Q Consensus 56 ~~~c~w~g--v~c~~~--------~~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~ 125 (394)
...|.|.+ +.|+.. ..+++.++++++.+++.. +..+..+++|++|++++|.+.+.++.. .+.
T Consensus 5 ~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~-----~~~~~~l~~L~~L~L~~n~~~~~i~~~---~~~ 76 (455)
T 3v47_A 5 TSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELN-----ETSFSRLQDLQFLKVEQQTPGLVIRNN---TFR 76 (455)
T ss_dssp --CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEEC-----TTTTSSCTTCCEEECCCCSTTCEECTT---TTT
T ss_pred cceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCC-----hhHhccCccccEEECcCCcccceECcc---ccc
Confidence 34565555 778642 257899999999886433 345788999999999999988776542 378
Q ss_pred CCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeecccc----ccCCCCCCEEEcCCCCCCccccc----cCCCC
Q 041570 126 RLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIE----VKGSSKLQSLDLSHNNLNRIILS----SLTTL 197 (394)
Q Consensus 126 ~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~~~~----~l~~L 197 (394)
++++|++|++++|.+++..|..++++++|++|++++|.+++..+ +..+++|++|++++|.+++..|. .+++|
T Consensus 77 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 156 (455)
T 3v47_A 77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF 156 (455)
T ss_dssp TCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTC
T ss_pred ccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcc
Confidence 89999999999999998888899999999999999999987443 66779999999999999887654 78999
Q ss_pred cEEEccCcccCCccChhhhcC----------------------------------CCCCCEEECCCCCCCCCcccC----
Q 041570 198 SELYLSGMGFEGTFDVQEFDS----------------------------------LSNLEELYLSNNKGINNFVVP---- 239 (394)
Q Consensus 198 ~~L~l~~~~~~~~~~~~~~~~----------------------------------l~~L~~L~l~~n~~~~~~~~~---- 239 (394)
++|++++|.+.+..+ ..+.. +++|++|++++|.+. +..+.
T Consensus 157 ~~L~L~~n~l~~~~~-~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~ 234 (455)
T 3v47_A 157 HVLDLTFNKVKSICE-EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK-ESMAKRFFD 234 (455)
T ss_dssp CEEECTTCCBSCCCT-TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCC-HHHHHHHHH
T ss_pred cEEeCCCCcccccCh-hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCccc-ccchhhhhc
Confidence 999999999886655 44433 356778888877664 22211
Q ss_pred --------------------------------cCCC--CCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCC
Q 041570 240 --------------------------------QDYR--GLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFT 285 (394)
Q Consensus 240 --------------------------------~~~~--~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 285 (394)
..+. ..++|++|++++|.+++. .|..+..+++|++|++++|+++
T Consensus 235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~ 312 (455)
T 3v47_A 235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL--LKSVFSHFTDLEQLTLAQNEIN 312 (455)
T ss_dssp HTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE--CTTTTTTCTTCCEEECTTSCCC
T ss_pred cccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccccc--chhhcccCCCCCEEECCCCccc
Confidence 0011 125789999999998876 7788899999999999999999
Q ss_pred ccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCcccc
Q 041570 286 ATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQ 365 (394)
Q Consensus 286 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~ 365 (394)
+..|..|..+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|. .+..+++|++|++++ |.++ +..+
T Consensus 313 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~--N~l~-~~~~ 388 (455)
T 3v47_A 313 KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ-SFLGLPNLKELALDT--NQLK-SVPD 388 (455)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCS--SCCS-CCCT
T ss_pred ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChh-hccccccccEEECCC--Cccc-cCCH
Confidence 99899999999999999999999988889999999999999999999977677 889999999999999 9998 5444
Q ss_pred ccccccCCCcEEeccccccceeEee
Q 041570 366 IIGESMASLKHLSLSYSILNANCTI 390 (394)
Q Consensus 366 ~~~~~~~~L~~L~l~~n~l~g~~~~ 390 (394)
..+..+++|+.|++++|+++|.||.
T Consensus 389 ~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 389 GIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hHhccCCcccEEEccCCCcccCCCc
Confidence 6778999999999999999999984
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.5e-36 Score=287.87 Aligned_cols=312 Identities=24% Similarity=0.284 Sum_probs=270.7
Q ss_pred cceeEecC---------CCCcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCc
Q 041570 61 WESVECSN---------TTGRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLK 131 (394)
Q Consensus 61 w~gv~c~~---------~~~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~ 131 (394)
|..|.|.. ....++.|++++++++... ...|..+++|++|++++|.+++..+.. +.++++|+
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~ 83 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLN-----QDEFASFPHLEELELNENIVSAVEPGA----FNNLFNLR 83 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEEC-----TTTTTTCTTCCEEECTTSCCCEECTTT----TTTCTTCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceEC-----HhHccCCCCCCEEECCCCccCEeChhh----hhCCccCC
Confidence 56777753 2346889999999886543 345788999999999999998776654 89999999
Q ss_pred EEEcccccCCccchHhhhcCCCCCEEEcCCceeecccc--ccCCCCCCEEEcCCCCCCccccc---cCCCCcEEEccCcc
Q 041570 132 FLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIE--VKGSSKLQSLDLSHNNLNRIILS---SLTTLSELYLSGMG 206 (394)
Q Consensus 132 ~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~---~l~~L~~L~l~~~~ 206 (394)
+|+|++|.+++..+..|.++++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+. .+++|++|++++|.
T Consensus 84 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 163 (477)
T 2id5_A 84 TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN 163 (477)
T ss_dssp EEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC
T ss_pred EEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc
Confidence 99999999986555678999999999999999988655 67889999999999999887664 78899999999999
Q ss_pred cCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCc
Q 041570 207 FEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTA 286 (394)
Q Consensus 207 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 286 (394)
+++ ++...+..+++|++|++++|.+. .++...+..+++|++|++++|...+. ++.......+|++|++++|++++
T Consensus 164 l~~-~~~~~l~~l~~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~n~l~~ 238 (477)
T 2id5_A 164 LTS-IPTEALSHLHGLIVLRLRHLNIN--AIRDYSFKRLYRLKVLEISHWPYLDT--MTPNCLYGLNLTSLSITHCNLTA 238 (477)
T ss_dssp CSS-CCHHHHTTCTTCCEEEEESCCCC--EECTTCSCSCTTCCEEEEECCTTCCE--ECTTTTTTCCCSEEEEESSCCCS
T ss_pred Ccc-cChhHhcccCCCcEEeCCCCcCc--EeChhhcccCcccceeeCCCCccccc--cCcccccCccccEEECcCCcccc
Confidence 985 44478999999999999999987 45556899999999999999988776 67666667799999999999998
Q ss_pred cchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccccc
Q 041570 287 TTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQI 366 (394)
Q Consensus 287 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~ 366 (394)
..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..|. .+..+++|++|++++ |.++ +..+.
T Consensus 239 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~--N~l~-~~~~~ 314 (477)
T 2id5_A 239 VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY-AFRGLNYLRVLNVSG--NQLT-TLEES 314 (477)
T ss_dssp CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT-TBTTCTTCCEEECCS--SCCS-CCCGG
T ss_pred cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH-HhcCcccCCEEECCC--CcCc-eeCHh
Confidence 7778899999999999999999988888899999999999999999977677 899999999999999 9998 54456
Q ss_pred cccccCCCcEEeccccccceeEee
Q 041570 367 IGESMASLKHLSLSYSILNANCTI 390 (394)
Q Consensus 367 ~~~~~~~L~~L~l~~n~l~g~~~~ 390 (394)
.+..+++|+.|++++|+++|.|++
T Consensus 315 ~~~~l~~L~~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 315 VFHSVGNLETLILDSNPLACDCRL 338 (477)
T ss_dssp GBSCGGGCCEEECCSSCEECSGGG
T ss_pred HcCCCcccCEEEccCCCccCccch
Confidence 788999999999999999998864
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.2e-35 Score=288.53 Aligned_cols=300 Identities=22% Similarity=0.257 Sum_probs=266.3
Q ss_pred cEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcC
Q 041570 72 RVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARL 151 (394)
Q Consensus 72 ~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l 151 (394)
.++.++++++.+.... ...|..+++|++|++++|.++ .+|.. +..+++|++|++++|.+.+..|..+.++
T Consensus 255 ~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~-~lp~~----l~~l~~L~~L~l~~n~l~~~~~~~~~~l 324 (606)
T 3t6q_A 255 SVESINLQKHYFFNIS-----SNTFHCFSGLQELDLTATHLS-ELPSG----LVGLSTLKKLVLSANKFENLCQISASNF 324 (606)
T ss_dssp EEEEEECTTCCCSSCC-----TTTTTTCTTCSEEECTTSCCS-CCCSS----CCSCTTCCEEECTTCCCSBGGGGCGGGC
T ss_pred ceeEEEeecCccCccC-----HHHhccccCCCEEeccCCccC-CCChh----hcccccCCEEECccCCcCcCchhhhhcc
Confidence 6899999999885443 345788999999999999998 45543 7899999999999999998888899999
Q ss_pred CCCCEEEcCCceeecccc---ccCCCCCCEEEcCCCCCCccc--c---ccCCCCcEEEccCcccCCccChhhhcCCCCCC
Q 041570 152 SSLISLSLSHNKLEGSIE---VKGSSKLQSLDLSHNNLNRII--L---SSLTTLSELYLSGMGFEGTFDVQEFDSLSNLE 223 (394)
Q Consensus 152 ~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~--~---~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 223 (394)
++|++|++++|.+.+.++ +..+++|++|++++|.+.+.. + ..+++|++|++++|.+.+..+ ..+..+++|+
T Consensus 325 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~ 403 (606)
T 3t6q_A 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT-EAFKECPQLE 403 (606)
T ss_dssp TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT-TTTTTCTTCS
T ss_pred CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH-HHhcCCccCC
Confidence 999999999999987666 567799999999999998875 3 278999999999999986665 7899999999
Q ss_pred EEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCcc---chhhcCCCCCCCE
Q 041570 224 ELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTAT---TTQELHNFTNLEF 300 (394)
Q Consensus 224 ~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~---~~~~l~~~~~L~~ 300 (394)
+|++++|.+. +..+...+..+++|++|++++|.+.+. .|..+..+++|++|++++|++++. .+..+..+++|+.
T Consensus 404 ~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~ 480 (606)
T 3t6q_A 404 LLDLAFTRLK-VKDAQSPFQNLHLLKVLNLSHSLLDIS--SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480 (606)
T ss_dssp EEECTTCCEE-CCTTCCTTTTCTTCCEEECTTCCCBTT--CTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCE
T ss_pred eEECCCCcCC-CcccchhhhCcccCCEEECCCCccCCc--CHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccE
Confidence 9999999987 555555689999999999999999887 678889999999999999999873 2356889999999
Q ss_pred EEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccccccccccCCCcEEecc
Q 041570 301 LNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLS 380 (394)
Q Consensus 301 L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~ 380 (394)
|++++|.+++..|..+..+++|++|++++|.+++..|. .+..++.| +|++++ |.++ +..|..+..+++|+.|+++
T Consensus 481 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~l~~L-~L~L~~--N~l~-~~~~~~~~~l~~L~~L~l~ 555 (606)
T 3t6q_A 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE-ALSHLKGI-YLNLAS--NHIS-IILPSLLPILSQQRTINLR 555 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGG-GGTTCCSC-EEECCS--SCCC-CCCGGGHHHHHTSSEEECT
T ss_pred EECCCCccCccChhhhccccCCCEEECCCCccCcCChh-HhCccccc-EEECcC--Cccc-ccCHhhcccCCCCCEEeCC
Confidence 99999999988899999999999999999999988887 89999999 999999 9999 7778889999999999999
Q ss_pred ccccceeEee
Q 041570 381 YSILNANCTI 390 (394)
Q Consensus 381 ~n~l~g~~~~ 390 (394)
+|+++|+|+.
T Consensus 556 ~N~~~c~c~~ 565 (606)
T 3t6q_A 556 QNPLDCTCSN 565 (606)
T ss_dssp TCCEECSGGG
T ss_pred CCCccccCCc
Confidence 9999999874
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4e-34 Score=274.17 Aligned_cols=294 Identities=25% Similarity=0.256 Sum_probs=246.1
Q ss_pred EEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccc-hHhhhcCCC
Q 041570 75 GLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSI-SSSLARLSS 153 (394)
Q Consensus 75 ~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~-p~~l~~l~~ 153 (394)
.++.++.+++..+. + .++|++|++++|.+++..+.. ++++++|++|++++|.+.+.+ +..|.++++
T Consensus 14 ~~~c~~~~l~~lp~--l-------~~~l~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~ 80 (455)
T 3v47_A 14 NAICINRGLHQVPE--L-------PAHVNYVDLSLNSIAELNETS----FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80 (455)
T ss_dssp EEECCSSCCSSCCC--C-------CTTCCEEECCSSCCCEECTTT----TSSCTTCCEEECCCCSTTCEECTTTTTTCTT
T ss_pred ccCcCCCCcccCCC--C-------CCccCEEEecCCccCcCChhH----hccCccccEEECcCCcccceECccccccccc
Confidence 46667766654433 1 278999999999998776654 899999999999999998666 557899999
Q ss_pred CCEEEcCCceeecccc--ccCCCCCCEEEcCCCCCCccccc-----cCCCCcEEEccCcccCCccChhhhcCCCCCCEEE
Q 041570 154 LISLSLSHNKLEGSIE--VKGSSKLQSLDLSHNNLNRIILS-----SLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELY 226 (394)
Q Consensus 154 L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~-----~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 226 (394)
|++|++++|.+++..| +..+++|++|++++|.+++..+. .+++|++|++++|.+++..+...++++++|++|+
T Consensus 81 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 160 (455)
T 3v47_A 81 LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160 (455)
T ss_dssp CCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEE
T ss_pred CCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEe
Confidence 9999999999988655 77889999999999999985433 6899999999999999777744489999999999
Q ss_pred CCCCCCCCCcccCcCCC----------------------------------CCCCcCEEEcCCCCCCCChhhhhhcC---
Q 041570 227 LSNNKGINNFVVPQDYR----------------------------------GLSKLKRLDLSGVGIRDGSELLRSMG--- 269 (394)
Q Consensus 227 l~~n~~~~~~~~~~~~~----------------------------------~l~~L~~L~l~~n~~~~~~~~~~~l~--- 269 (394)
+++|.+. +..+. .+. .+++|++|++++|.+++. .|..+.
T Consensus 161 L~~n~l~-~~~~~-~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~~~~ 236 (455)
T 3v47_A 161 LTFNKVK-SICEE-DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES--MAKRFFDAI 236 (455)
T ss_dssp CTTCCBS-CCCTT-TSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHH--HHHHHHHHT
T ss_pred CCCCccc-ccChh-hhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCccccc--chhhhhccc
Confidence 9999987 33332 332 336799999999988764 443331
Q ss_pred ------------------------------------CCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhh
Q 041570 270 ------------------------------------SFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLL 313 (394)
Q Consensus 270 ------------------------------------~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 313 (394)
..++|++|++++|.+++..|..+..+++|+.|++++|.+++..|
T Consensus 237 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 316 (455)
T 3v47_A 237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD 316 (455)
T ss_dssp TTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred cccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh
Confidence 12579999999999999999999999999999999999998888
Q ss_pred hchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccccccccccCCCcEEeccccccceeEe
Q 041570 314 KTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLSYSILNANCT 389 (394)
Q Consensus 314 ~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~l~g~~~ 389 (394)
..+..+++|++|++++|.+++..|. .+..+++|++|++++ |.++ +..|..+..+++|++|++++|++++..+
T Consensus 317 ~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~--N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 388 (455)
T 3v47_A 317 NAFWGLTHLLKLNLSQNFLGSIDSR-MFENLDKLEVLDLSY--NHIR-ALGDQSFLGLPNLKELALDTNQLKSVPD 388 (455)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECGG-GGTTCTTCCEEECCS--SCCC-EECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred hHhcCcccCCEEECCCCccCCcChh-HhcCcccCCEEECCC--Cccc-ccChhhccccccccEEECCCCccccCCH
Confidence 8999999999999999999866566 889999999999999 9998 7778899999999999999999997544
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.2e-33 Score=278.66 Aligned_cols=310 Identities=19% Similarity=0.229 Sum_probs=216.9
Q ss_pred cceeEecC---------CCCcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCc
Q 041570 61 WESVECSN---------TTGRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLK 131 (394)
Q Consensus 61 w~gv~c~~---------~~~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~ 131 (394)
+..+.|.. ....++.++++++.++... +..|..+++|++|++++|.+++..|.. ++++++|+
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~-----~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~ 84 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQ-----NTTFSRLINLTFLDLTRCQIYWIHEDT----FQSQHRLD 84 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEEC-----TTTSTTCTTCSEEECTTCCCCEECTTT----TTTCTTCC
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCC-----hhHhccCccceEEECCCCccceeChhh----ccCccccC
Confidence 44577753 2347899999999886443 345788999999999999998776654 88999999
Q ss_pred EEEcccccCCccchHhhhcCCCCCEEEcCCceeecc--ccccCCCCCCEEEcCCCCCCccc-cc--cCCCCcEEEccCcc
Q 041570 132 FLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGS--IEVKGSSKLQSLDLSHNNLNRII-LS--SLTTLSELYLSGMG 206 (394)
Q Consensus 132 ~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~~~-~~--~l~~L~~L~l~~~~ 206 (394)
+|++++|.+.+..|..++++++|++|++++|.+++. .++..+++|++|++++|++.+.. +. .+++|++|++++|.
T Consensus 85 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 164 (606)
T 3t6q_A 85 TLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA 164 (606)
T ss_dssp EEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC
T ss_pred eeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc
Confidence 999999999988888999999999999999999884 44778899999999999998853 33 67899999999998
Q ss_pred cCCccChhhhcCCCCCC--EEECCCCCCCCCccc----------------------------------------------
Q 041570 207 FEGTFDVQEFDSLSNLE--ELYLSNNKGINNFVV---------------------------------------------- 238 (394)
Q Consensus 207 ~~~~~~~~~~~~l~~L~--~L~l~~n~~~~~~~~---------------------------------------------- 238 (394)
+++..+ ..++.+++|+ +|++++|.+. +..+
T Consensus 165 l~~~~~-~~~~~l~~L~~l~L~l~~n~l~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~ 242 (606)
T 3t6q_A 165 IHYLSK-EDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242 (606)
T ss_dssp CCEECH-HHHHTTTTCCSEEEECTTCCCC-EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCC
T ss_pred ccccCh-hhhhhhcccceeEEecCCCccC-ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccc
Confidence 885544 7788888888 7888887765 2211
Q ss_pred ----------------------------CcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchh
Q 041570 239 ----------------------------PQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQ 290 (394)
Q Consensus 239 ----------------------------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 290 (394)
+..+..+++|++|++++|.++. +|..+..+++|++|++++|.+++..|.
T Consensus 243 i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---lp~~l~~l~~L~~L~l~~n~l~~~~~~ 319 (606)
T 3t6q_A 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE---LPSGLVGLSTLKKLVLSANKFENLCQI 319 (606)
T ss_dssp CCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC---CCSSCCSCTTCCEEECTTCCCSBGGGG
T ss_pred cChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCC---CChhhcccccCCEEECccCCcCcCchh
Confidence 1124445556666666665553 455555556666666666666555555
Q ss_pred hcCCCCCCCEEEcCCCcCChhhhhc-hhccCCCCeEecCCcccceee--chhhccCCCCCcEEEcCCCCcccCCcccccc
Q 041570 291 ELHNFTNLEFLNLRHSSLDINLLKT-IASFTSLKNLSMVSCEVNGVL--DGQGFLNFKSLERLDMGGARNALNASFLQII 367 (394)
Q Consensus 291 ~l~~~~~L~~L~l~~n~l~~~~~~~-l~~~~~L~~L~l~~n~l~~~i--p~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~ 367 (394)
.+..+++|+.|++++|.+.+.+|.. +..+++|++|++++|.+++.. +. .+..+++|++|++++ |.+. +..|..
T Consensus 320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~L~l~~--n~l~-~~~~~~ 395 (606)
T 3t6q_A 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL-QLRNLSHLQSLNLSY--NEPL-SLKTEA 395 (606)
T ss_dssp CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT-TTTTCTTCCEEECCS--CSCE-EECTTT
T ss_pred hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcch-hcccCCCCCEEECCC--CcCC-cCCHHH
Confidence 5556666666666666555444433 555666666666666665443 33 455666666666666 6665 455566
Q ss_pred ccccCCCcEEeccccccceeE
Q 041570 368 GESMASLKHLSLSYSILNANC 388 (394)
Q Consensus 368 ~~~~~~L~~L~l~~n~l~g~~ 388 (394)
+..+++|+.|++++|++++..
T Consensus 396 ~~~l~~L~~L~l~~n~l~~~~ 416 (606)
T 3t6q_A 396 FKECPQLELLDLAFTRLKVKD 416 (606)
T ss_dssp TTTCTTCSEEECTTCCEECCT
T ss_pred hcCCccCCeEECCCCcCCCcc
Confidence 666666666666666666543
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.4e-33 Score=279.94 Aligned_cols=86 Identities=27% Similarity=0.250 Sum_probs=45.3
Q ss_pred CcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhc
Q 041570 71 GRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLAR 150 (394)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~ 150 (394)
.+++.++++++.++.... ..|..+++|++|++++|.+++..+.. +.++++|++|++++|.+++..|..|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~Ls~n~l~~i~~~~----~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 102 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKS-----YSFSNFSELQWLDLSRCEIETIEDKA----WHGLHHLSNLILTGNPIQSFSPGSFSG 102 (606)
T ss_dssp TTCCEEECTTSCCCEECT-----TTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred CCcCEEECCCCCcCEeCh-----hhccCCccCcEEeCCCCcccccCHHH----hhchhhcCEeECCCCcccccChhhcCC
Confidence 467777777777643322 23445555555555555555443332 445555555555555555444445555
Q ss_pred CCCCCEEEcCCceee
Q 041570 151 LSSLISLSLSHNKLE 165 (394)
Q Consensus 151 l~~L~~L~l~~n~l~ 165 (394)
+++|++|++++|.++
T Consensus 103 l~~L~~L~L~~n~l~ 117 (606)
T 3vq2_A 103 LTSLENLVAVETKLA 117 (606)
T ss_dssp CTTCCEEECTTSCCC
T ss_pred cccCCEEEccCCccc
Confidence 555555555555443
No 12
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.2e-33 Score=276.00 Aligned_cols=165 Identities=18% Similarity=0.202 Sum_probs=140.4
Q ss_pred cCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccch-hhcCCC
Q 041570 217 DSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTT-QELHNF 295 (394)
Q Consensus 217 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~l~~~ 295 (394)
+.+++|++|++++|.+. +..+. .+..+++|++|++++|.+++...+|..+..+++|++|++++|.+++.+| ..+..+
T Consensus 350 ~~l~~L~~L~l~~n~l~-~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l 427 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFT-DSVFQ-GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA 427 (562)
T ss_dssp SSCCCCCEEECCSSCCC-TTTTT-TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC
T ss_pred cCCCCceEEECCCCccc-cchhh-hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCc
Confidence 56788999999999887 54554 7888999999999999998754467778889999999999999988444 457888
Q ss_pred CCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCcccccc-ccccCCC
Q 041570 296 TNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQII-GESMASL 374 (394)
Q Consensus 296 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~-~~~~~~L 374 (394)
++|+.|++++|.+++.+|..+. ++|++|++++|.++ .+|. .+..+++|++|++++ |.++ .+|.. +..+++|
T Consensus 428 ~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~-~~~~l~~L~~L~L~~--N~l~--~l~~~~~~~l~~L 499 (562)
T 3a79_B 428 ESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPK-DVTHLQALQELNVAS--NQLK--SVPDGVFDRLTSL 499 (562)
T ss_dssp TTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCT-TTTSSCCCSEEECCS--SCCC--CCCTTSTTTCTTC
T ss_pred ccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccCh-hhcCCCCCCEEECCC--CCCC--CCCHHHHhcCCCC
Confidence 9999999999999888777654 78999999999998 8888 455899999999999 9998 67866 8999999
Q ss_pred cEEeccccccceeEeec
Q 041570 375 KHLSLSYSILNANCTIL 391 (394)
Q Consensus 375 ~~L~l~~n~l~g~~~~~ 391 (394)
+.|++++|+++|+||+.
T Consensus 500 ~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 500 QYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp CCEECCSCCBCCCHHHH
T ss_pred CEEEecCCCcCCCcchH
Confidence 99999999999998753
No 13
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.4e-33 Score=273.26 Aligned_cols=164 Identities=18% Similarity=0.234 Sum_probs=136.7
Q ss_pred cCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchh-hcCCC
Q 041570 217 DSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQ-ELHNF 295 (394)
Q Consensus 217 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~-~l~~~ 295 (394)
..+++|++|++++|++. +.++. .+..+++|++|++++|.+++...+|..+..+++|++|++++|.+++.+|. .+..+
T Consensus 321 ~~l~~L~~L~Ls~n~l~-~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l 398 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLT-DTVFE-NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398 (520)
T ss_dssp SSCCCCCEEECCSSCCC-TTTTT-TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC
T ss_pred hhCCcccEEEeECCccC-hhhhh-hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccC
Confidence 56778888888888887 44554 77888899999999998887434677788889999999999998874554 47788
Q ss_pred CCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCcccccc-ccccCCC
Q 041570 296 TNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQII-GESMASL 374 (394)
Q Consensus 296 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~-~~~~~~L 374 (394)
++|+.|++++|.+++.+|..+. ++|++|++++|.++ .+|. .+..+++|++|++++ |.++ .+|.. +..+++|
T Consensus 399 ~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~-~~~~l~~L~~L~L~~--N~l~--~l~~~~~~~l~~L 470 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPK-QVVKLEALQELNVAS--NQLK--SVPDGIFDRLTSL 470 (520)
T ss_dssp TTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCS--SCCC--CCCTTTTTTCTTC
T ss_pred ccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccch-hhhcCCCCCEEECCC--CcCC--ccCHHHhccCCcc
Confidence 8999999999999888877664 78999999999998 8888 556899999999999 9998 67865 8889999
Q ss_pred cEEeccccccceeEee
Q 041570 375 KHLSLSYSILNANCTI 390 (394)
Q Consensus 375 ~~L~l~~n~l~g~~~~ 390 (394)
+.|++++|+++|+|++
T Consensus 471 ~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 471 QKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CEEECCSSCBCCCHHH
T ss_pred cEEECcCCCCcccCCc
Confidence 9999999999998874
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.8e-33 Score=275.92 Aligned_cols=314 Identities=23% Similarity=0.257 Sum_probs=190.0
Q ss_pred CCccceeEecCC-----------CCcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcC
Q 041570 58 FCQWESVECSNT-----------TGRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSR 126 (394)
Q Consensus 58 ~c~w~gv~c~~~-----------~~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~ 126 (394)
.|.|.++ |+.. ..+++.+++++++++...+ ..+..+++|++|++++|.+++..+.. +..
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~ 72 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGH-----GDLRACANLQVLILKSSRINTIEGDA----FYS 72 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECS-----STTSSCTTCCEEECTTSCCCEECTTT----TTT
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccCh-----hhhhcCCcccEEECCCCCcCccChhh----ccc
Confidence 4778887 7531 2378999999998754432 34677888899999888888766544 778
Q ss_pred CCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeecc-cc--ccCCCCCCEEEcCCCCCCccccc----cCCCCcE
Q 041570 127 LSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGS-IE--VKGSSKLQSLDLSHNNLNRIILS----SLTTLSE 199 (394)
Q Consensus 127 l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~-~~--~~~~~~L~~L~l~~n~l~~~~~~----~l~~L~~ 199 (394)
+++|++|++++|.+++..|..++++++|++|++++|.+++. .| +..+++|++|++++|.+.+.++. .+++|++
T Consensus 73 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 152 (549)
T 2z81_A 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152 (549)
T ss_dssp CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCe
Confidence 88888888888888877777788888888888888887752 22 45556666666666653332221 3333344
Q ss_pred EEccCcccCCccChhhh---------------------------------------------------------------
Q 041570 200 LYLSGMGFEGTFDVQEF--------------------------------------------------------------- 216 (394)
Q Consensus 200 L~l~~~~~~~~~~~~~~--------------------------------------------------------------- 216 (394)
|++++|.+++..+ ..+
T Consensus 153 L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~ 231 (549)
T 2z81_A 153 LEIKALSLRNYQS-QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231 (549)
T ss_dssp EEEEETTCCEECT-TTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEE
T ss_pred eeccCCcccccCh-hhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecc
Confidence 4443333332211 111
Q ss_pred --------------------------------------------------------------------------------
Q 041570 217 -------------------------------------------------------------------------------- 216 (394)
Q Consensus 217 -------------------------------------------------------------------------------- 216 (394)
T Consensus 232 ~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~ 311 (549)
T 2z81_A 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK 311 (549)
T ss_dssp SCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTT
T ss_pred ccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhccc
Confidence
Q ss_pred -------------------cCCCCCCEEECCCCCCCCCcccC--cCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCC
Q 041570 217 -------------------DSLSNLEELYLSNNKGINNFVVP--QDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLK 275 (394)
Q Consensus 217 -------------------~~l~~L~~L~l~~n~~~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~ 275 (394)
..+++|++|++++|++. +.++. ..+..+++|++|++++|.+++....+..+..+++|+
T Consensus 312 L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~ 390 (549)
T 2z81_A 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV-EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 390 (549)
T ss_dssp CCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCC-HHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCC
T ss_pred ceEEEeccCccccCCHHHHhcCccccEEEccCCccc-cccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCC
Confidence 22344444444444443 22211 123444455555555555444210112344455555
Q ss_pred EEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChh---hhhc--------------hhccCCCCeEecCCcccceeech
Q 041570 276 TLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDIN---LLKT--------------IASFTSLKNLSMVSCEVNGVLDG 338 (394)
Q Consensus 276 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~---~~~~--------------l~~~~~L~~L~l~~n~l~~~ip~ 338 (394)
+|++++|+++ .+|..+..+++|+.|++++|.+++. +|.. +..+++|++|++++|.++ .+|.
T Consensus 391 ~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~ 468 (549)
T 2z81_A 391 SLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD 468 (549)
T ss_dssp EEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC
T ss_pred EEECCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC
Confidence 5555555555 3344444455555555555554321 1110 124667777777777776 6665
Q ss_pred hhccCCCCCcEEEcCCCCcccCCccccccccccCCCcEEeccccccceeEee
Q 041570 339 QGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLSYSILNANCTI 390 (394)
Q Consensus 339 ~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~l~g~~~~ 390 (394)
...+++|++|++++ |.++ +..|..+..+++|+.|++++|+++|.||.
T Consensus 469 --~~~l~~L~~L~Ls~--N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 469 --ASLFPVLLVMKISR--NQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp --GGGCTTCCEEECCS--SCCC-CCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred --cccCccCCEEecCC--CccC-CcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 24678888888888 8888 66667788899999999999999998874
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.3e-33 Score=280.91 Aligned_cols=303 Identities=16% Similarity=0.148 Sum_probs=203.1
Q ss_pred CCcEEEEecCCCCCCCC--CCC-----------ccccccCC--CCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEE
Q 041570 70 TGRVIGLDLSDTRNEDL--GEG-----------YLNAFLFT--PFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLD 134 (394)
Q Consensus 70 ~~~v~~l~l~~~~~~~~--~~~-----------~l~~~~~~--~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~ 134 (394)
-.+++.++++++.++.. ... .++ ..+. .+++|++|++++|.+.+.+|.. ++++++|++|+
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip-~~l~~~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~ 279 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-EDLKWDNLKDLTDVEVYNCPNLTKLPTF----LKALPEMQLIN 279 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCTTCCEEEEECCTTCSSCCTT----TTTCSSCCEEE
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCc-hhhhhcccCCCCEEEecCCcCCccChHH----HhcCCCCCEEE
Confidence 34688999999988651 000 022 2355 8999999999999999998865 88999999999
Q ss_pred ccccc-CCc-cchHhhhcC------CCCCEEEcCCceeecccc----ccCCCCCCEEEcCCCCCCccccc--cCCCCcEE
Q 041570 135 LRMNL-FKN-SISSSLARL------SSLISLSLSHNKLEGSIE----VKGSSKLQSLDLSHNNLNRIILS--SLTTLSEL 200 (394)
Q Consensus 135 L~~n~-~~~-~~p~~l~~l------~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~~~~--~l~~L~~L 200 (394)
+++|. ++| .+|..++++ ++|++|++++|.++. +| +..+++|++|++++|.++|.+|. .+++|++|
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~-ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L 358 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT-FPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASL 358 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS-CCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEE
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc-cCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEE
Confidence 99998 988 899888876 899999999999984 54 46778999999999998877664 45667777
Q ss_pred EccCcccCCccChhhhcCCCC-CCEEECCCCCCCCCcccCcCCCCCC--CcCEEEcCCCCCCCChhhhhhcC-------C
Q 041570 201 YLSGMGFEGTFDVQEFDSLSN-LEELYLSNNKGINNFVVPQDYRGLS--KLKRLDLSGVGIRDGSELLRSMG-------S 270 (394)
Q Consensus 201 ~l~~~~~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~l~-------~ 270 (394)
++++|.++ .+| ..+..+++ |++|++++|.+. .+|. .+...+ +|++|++++|.+++. +|..+. .
T Consensus 359 ~L~~N~l~-~lp-~~l~~l~~~L~~L~Ls~N~l~--~lp~-~~~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~~~~~~~~ 431 (636)
T 4eco_A 359 NLAYNQIT-EIP-ANFCGFTEQVENLSFAHNKLK--YIPN-IFDAKSVSVMSAIDFSYNEIGSV--DGKNFDPLDPTPFK 431 (636)
T ss_dssp ECCSSEEE-ECC-TTSEEECTTCCEEECCSSCCS--SCCS-CCCTTCSSCEEEEECCSSCTTTT--TTCSSCTTCSSCCC
T ss_pred ECCCCccc-ccc-HhhhhhcccCcEEEccCCcCc--ccch-hhhhcccCccCEEECcCCcCCCc--chhhhccccccccc
Confidence 77777766 555 55666666 777777776664 3443 333332 455555555555544 343333 3
Q ss_pred ------------------------CCCCCEEeCcCCCCCccchhhcCCC-------CCCCEEEcCCCcCChhhhhchh--
Q 041570 271 ------------------------FPSLKTLFLEANNFTATTTQELHNF-------TNLEFLNLRHSSLDINLLKTIA-- 317 (394)
Q Consensus 271 ------------------------~~~L~~L~l~~n~~~~~~~~~l~~~-------~~L~~L~l~~n~l~~~~~~~l~-- 317 (394)
+++|++|++++|+++...+..+... ++|+.|++++|.++ .+|..+.
T Consensus 432 ~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~ 510 (636)
T 4eco_A 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRAT 510 (636)
T ss_dssp CCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTT
T ss_pred CCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhc
Confidence 4445555555555542222222111 16666666666666 5555554
Q ss_pred ccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCC----cccCCccccccccccCCCcEEeccccccceeEee
Q 041570 318 SFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGAR----NALNASFLQIIGESMASLKHLSLSYSILNANCTI 390 (394)
Q Consensus 318 ~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~----n~l~~g~l~~~~~~~~~L~~L~l~~n~l~g~~~~ 390 (394)
.+++|++|++++|.+++ +|. .+..+++|++|++++++ |.+. +.+|..+..+++|+.|++++|++ +.+|.
T Consensus 511 ~l~~L~~L~Ls~N~l~~-ip~-~~~~l~~L~~L~Ls~N~~ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~ 583 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSK-FPT-QPLNSSTLKGFGIRNQRDAQGNRTL-REWPEGITLCPSLTQLQIGSNDI-RKVNE 583 (636)
T ss_dssp TCTTCCEEECCSSCCSS-CCC-GGGGCSSCCEEECCSCBCTTCCBCC-CCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred cCCCcCEEECCCCCCCC-cCh-hhhcCCCCCEEECCCCcccccCccc-ccChHHHhcCCCCCEEECCCCcC-CccCH
Confidence 67777777777777775 666 56667777777774311 5566 67777777777777777777777 55553
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=9.6e-34 Score=266.06 Aligned_cols=288 Identities=22% Similarity=0.214 Sum_probs=212.5
Q ss_pred cEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcC
Q 041570 72 RVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARL 151 (394)
Q Consensus 72 ~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l 151 (394)
.++.++++++.++. ++...+..+++|++|++++|.+++..+.. +..+++|++|++++|.+++..|..++++
T Consensus 46 ~l~~l~l~~~~l~~-----l~~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l 116 (390)
T 3o6n_A 46 NQKIVTFKNSTMRK-----LPAALLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQKLYMGFNAIRYLPPHVFQNV 116 (390)
T ss_dssp CCSEEEEESCEESE-----ECTHHHHHCCCCSEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CceEEEecCCchhh-----CChhHhcccccCcEEECCCCcccccChhh----ccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence 44556666665532 33444677888888888888887655543 7888888888888888887777778888
Q ss_pred CCCCEEEcCCceeecccc--ccCCCCCCEEEcCCCCCCccccc---cCCCCcEEEccCcccCCccChhhhcCCCCCCEEE
Q 041570 152 SSLISLSLSHNKLEGSIE--VKGSSKLQSLDLSHNNLNRIILS---SLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELY 226 (394)
Q Consensus 152 ~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 226 (394)
++|++|++++|.++...+ +..+++|++|++++|.+.+..+. .+++|++|++++|.+++. + ++.+++|++++
T Consensus 117 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~---~~~l~~L~~L~ 192 (390)
T 3o6n_A 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D---LSLIPSLFHAN 192 (390)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C---GGGCTTCSEEE
T ss_pred CCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c---cccccccceee
Confidence 888888888888876333 45678888888888888877654 678888888888887743 2 34455555555
Q ss_pred CCCCCCCCC-----------------cccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccch
Q 041570 227 LSNNKGINN-----------------FVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTT 289 (394)
Q Consensus 227 l~~n~~~~~-----------------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 289 (394)
+++|.+..- .++. ...++|++|++++|.+++. +.+..+++|++|++++|.+++..|
T Consensus 193 l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~Ls~n~l~~~~~ 265 (390)
T 3o6n_A 193 VSYNLLSTLAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT----AWLLNYPGLVEVDLSYNELEKIMY 265 (390)
T ss_dssp CCSSCCSEEECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCEEES
T ss_pred cccccccccCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc----HHHcCCCCccEEECCCCcCCCcCh
Confidence 555544310 1121 1235788888888888764 356778888888888888888888
Q ss_pred hhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCcccccccc
Q 041570 290 QELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGE 369 (394)
Q Consensus 290 ~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~ 369 (394)
..+..+++|+.|++++|.+++ +|..+..+++|++|++++|.+. .+|. .+..+++|++|++++ |.++ .++ +.
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~~l~~L~~L~L~~--N~i~--~~~--~~ 336 (390)
T 3o6n_A 266 HPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVER-NQPQFDRLENLYLDH--NSIV--TLK--LS 336 (390)
T ss_dssp GGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGG-GHHHHTTCSEEECCS--SCCC--CCC--CC
T ss_pred hHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCc-cccccCcCCEEECCC--Cccc--eeC--ch
Confidence 888888888888888888874 5666677888888888888887 5666 566778888888888 8887 444 66
Q ss_pred ccCCCcEEeccccccceeE
Q 041570 370 SMASLKHLSLSYSILNANC 388 (394)
Q Consensus 370 ~~~~L~~L~l~~n~l~g~~ 388 (394)
.+++|+.|++++|++++.+
T Consensus 337 ~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 337 THHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp TTCCCSEEECCSSCEEHHH
T ss_pred hhccCCEEEcCCCCccchh
Confidence 7888899999998888764
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.9e-33 Score=267.13 Aligned_cols=294 Identities=20% Similarity=0.178 Sum_probs=254.4
Q ss_pred EEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCCC
Q 041570 75 GLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSSL 154 (394)
Q Consensus 75 ~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L 154 (394)
.++.++.+++..+.. -.+++++|++++|.+++..+.. +.++++|++|+|++|.+++..|..|.++++|
T Consensus 15 ~v~c~~~~l~~ip~~--------~~~~l~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 82 (477)
T 2id5_A 15 AVLCHRKRFVAVPEG--------IPTETRLLDLGKNRIKTLNQDE----FASFPHLEELELNENIVSAVEPGAFNNLFNL 82 (477)
T ss_dssp EEECCSCCCSSCCSC--------CCTTCSEEECCSSCCCEECTTT----TTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred EEEeCCCCcCcCCCC--------CCCCCcEEECCCCccceECHhH----ccCCCCCCEEECCCCccCEeChhhhhCCccC
Confidence 566777776554431 1358999999999998776654 8899999999999999998889999999999
Q ss_pred CEEEcCCceeecccc--ccCCCCCCEEEcCCCCCCccccc---cCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCC
Q 041570 155 ISLSLSHNKLEGSIE--VKGSSKLQSLDLSHNNLNRIILS---SLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSN 229 (394)
Q Consensus 155 ~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 229 (394)
++|++++|.+++..+ +..+++|++|++++|.+.+..+. .+++|++|++++|.+.+..+ ..+..+++|++|++++
T Consensus 83 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~ 161 (477)
T 2id5_A 83 RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-RAFSGLNSLEQLTLEK 161 (477)
T ss_dssp CEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-TSSTTCTTCCEEEEES
T ss_pred CEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh-hhccCCCCCCEEECCC
Confidence 999999999987444 56789999999999999988665 78999999999999986555 7899999999999999
Q ss_pred CCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCC
Q 041570 230 NKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLD 309 (394)
Q Consensus 230 n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 309 (394)
|.+. .++...+..+++|++|++++|.+.+. .+..+..+++|++|++++|...+.+|.......+|+.|++++|.++
T Consensus 162 n~l~--~~~~~~l~~l~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 237 (477)
T 2id5_A 162 CNLT--SIPTEALSHLHGLIVLRLRHLNINAI--RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237 (477)
T ss_dssp CCCS--SCCHHHHTTCTTCCEEEEESCCCCEE--CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC
T ss_pred CcCc--ccChhHhcccCCCcEEeCCCCcCcEe--ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc
Confidence 9987 45555788999999999999999876 5667889999999999999988887777767779999999999999
Q ss_pred hhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccccccccccCCCcEEeccccccceeEe
Q 041570 310 INLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLSYSILNANCT 389 (394)
Q Consensus 310 ~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~l~g~~~ 389 (394)
+..+..+..+++|++|++++|.+++..+. .+..+++|++|++++ |.++ +..|..+..+++|+.|++++|++++..+
T Consensus 238 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~--n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 313 (477)
T 2id5_A 238 AVPYLAVRHLVYLRFLNLSYNPISTIEGS-MLHELLRLQEIQLVG--GQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEE 313 (477)
T ss_dssp SCCHHHHTTCTTCCEEECCSSCCCEECTT-SCTTCTTCCEEECCS--SCCS-EECTTTBTTCTTCCEEECCSSCCSCCCG
T ss_pred ccCHHHhcCccccCeeECCCCcCCccChh-hccccccCCEEECCC--Cccc-eECHHHhcCcccCCEEECCCCcCceeCH
Confidence 66567789999999999999999955444 889999999999999 9999 7778899999999999999999987554
No 18
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8e-33 Score=274.57 Aligned_cols=167 Identities=23% Similarity=0.237 Sum_probs=104.4
Q ss_pred hcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCc-cchhhcCC
Q 041570 216 FDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTA-TTTQELHN 294 (394)
Q Consensus 216 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~-~~~~~l~~ 294 (394)
+..+++|++|++++|.+. +..+...+..+++|++|++++|.+++. .|..+..+++|++|++++|.+++ .+|..+..
T Consensus 395 ~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 471 (606)
T 3vq2_A 395 FMGLEELQHLDFQHSTLK-RVTEFSAFLSLEKLLYLDISYTNTKID--FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471 (606)
T ss_dssp CTTCTTCCEEECTTSEEE-STTTTTTTTTCTTCCEEECTTSCCEEC--CTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred ccCCCCCCeeECCCCccC-CccChhhhhccccCCEEECcCCCCCcc--chhhhcCCCCCCEEECCCCcCCCcchHHhhcc
Confidence 333444444444444443 222223455556666666666666554 55556666666666666666665 35666666
Q ss_pred CCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccccccccccC-C
Q 041570 295 FTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMA-S 373 (394)
Q Consensus 295 ~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~-~ 373 (394)
+++|+.|++++|.+++..|..+..+++|++|++++|.+++.+|. .+..+++|++|++++ |.++ .+|..+..++ +
T Consensus 472 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~l~~--N~l~--~~p~~~~~l~~~ 546 (606)
T 3vq2_A 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS-HYNQLYSLSTLDCSF--NRIE--TSKGILQHFPKS 546 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGG-GTTTCTTCCEEECTT--SCCC--CEESCGGGSCTT
T ss_pred CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHH-HccCCCcCCEEECCC--CcCc--ccCHhHhhhccc
Confidence 67777777777777766666667777777777777777766565 666677777777777 6666 6666666665 4
Q ss_pred CcEEeccccccceeEee
Q 041570 374 LKHLSLSYSILNANCTI 390 (394)
Q Consensus 374 L~~L~l~~n~l~g~~~~ 390 (394)
|++|++++|++.|.|+.
T Consensus 547 L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 547 LAFFNLTNNSVACICEH 563 (606)
T ss_dssp CCEEECCSCCCCCSSTT
T ss_pred CcEEEccCCCcccCCcc
Confidence 77777777777776653
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.4e-32 Score=271.78 Aligned_cols=287 Identities=22% Similarity=0.212 Sum_probs=215.9
Q ss_pred EEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCC
Q 041570 73 VIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLS 152 (394)
Q Consensus 73 v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~ 152 (394)
++.++++++.+. .++...+..+++|++|++++|.+++..+.. ++.+++|++|+|++|.+++..|..|++++
T Consensus 53 l~~l~l~~~~l~-----~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 123 (597)
T 3oja_B 53 QKIVTFKNSTMR-----KLPAALLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123 (597)
T ss_dssp CSEEEESSCEES-----EECTHHHHHCCCCSEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ceEEEeeCCCCC-----CcCHHHHccCCCCcEEECCCCCCCCCChHH----hcCCCCCCEEECCCCcCCCCCHHHHcCCC
Confidence 344555555442 234445677888999999988888766543 78888899999999888877777788888
Q ss_pred CCCEEEcCCceeecccc--ccCCCCCCEEEcCCCCCCccccc---cCCCCcEEEccCcccCCccChhhhcCCCCCCEEEC
Q 041570 153 SLISLSLSHNKLEGSIE--VKGSSKLQSLDLSHNNLNRIILS---SLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYL 227 (394)
Q Consensus 153 ~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 227 (394)
+|++|++++|.+++..+ +..+++|++|++++|.+++..+. .+++|++|++++|.+++. + ++.+++|++|++
T Consensus 124 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~---~~~l~~L~~L~l 199 (597)
T 3oja_B 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D---LSLIPSLFHANV 199 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C---GGGCTTCSEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C---hhhhhhhhhhhc
Confidence 99999999988886444 46778899999998888887664 678888889888888743 2 344556666666
Q ss_pred CCCCCCCC-----------------cccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchh
Q 041570 228 SNNKGINN-----------------FVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQ 290 (394)
Q Consensus 228 ~~n~~~~~-----------------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 290 (394)
++|.+..- .++. ...++|+.|++++|.+++. ..+..+++|++|++++|.+++..|.
T Consensus 200 ~~n~l~~l~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~L~~n~l~~~----~~l~~l~~L~~L~Ls~N~l~~~~~~ 272 (597)
T 3oja_B 200 SYNLLSTLAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT----AWLLNYPGLVEVDLSYNELEKIMYH 272 (597)
T ss_dssp CSSCCSEEECCTTCSEEECCSSCCCEEEC---SCCSCCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred ccCccccccCCchhheeeccCCccccccc---ccCCCCCEEECCCCCCCCC----hhhccCCCCCEEECCCCccCCCCHH
Confidence 65554410 1111 1124688888888888763 4567788899999999988888888
Q ss_pred hcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccccccccc
Q 041570 291 ELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGES 370 (394)
Q Consensus 291 ~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~ 370 (394)
.|..+++|+.|++++|.+++ +|..+..+++|++|++++|.++ .+|. .+..+++|++|++++ |.++ .++ +..
T Consensus 273 ~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~-~~~~l~~L~~L~L~~--N~l~--~~~--~~~ 343 (597)
T 3oja_B 273 PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVER-NQPQFDRLENLYLDH--NSIV--TLK--LST 343 (597)
T ss_dssp GGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGG-GHHHHTTCSEEECCS--SCCC--CCC--CCT
T ss_pred HhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCc-ccccCCCCCEEECCC--CCCC--CcC--hhh
Confidence 88888889999999988885 5666677888999999998888 6776 567788899999988 8887 444 667
Q ss_pred cCCCcEEeccccccceeE
Q 041570 371 MASLKHLSLSYSILNANC 388 (394)
Q Consensus 371 ~~~L~~L~l~~n~l~g~~ 388 (394)
+++|+.|++++|+++|.+
T Consensus 344 ~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 344 HHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp TCCCSEEECCSSCEEHHH
T ss_pred cCCCCEEEeeCCCCCChh
Confidence 788999999999888865
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.5e-33 Score=283.45 Aligned_cols=309 Identities=20% Similarity=0.232 Sum_probs=247.4
Q ss_pred CccceeEecCCCCcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccc
Q 041570 59 CQWESVECSNTTGRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMN 138 (394)
Q Consensus 59 c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n 138 (394)
|.|..|.+ ...+++.|++++|.++... +..|..+++|++|++++|...+.++. ..++++++|++|+|++|
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~-----~~~~~~l~~L~~LdLs~n~~~~~i~~---~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVT-----ASSFPFLEQLQLLELGSQYTPLTIDK---EAFRNLPNLRILDLGSS 83 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEEC-----SSSCSSCCSCSEEEECTTCCCCEECT---TTTSSCTTCCEEECTTC
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccC-----hhHCcccccCeEEeCCCCCCccccCH---HHhcCCCCCCEEECCCC
Confidence 45666665 4568999999999886443 33578899999999999977777643 23899999999999999
Q ss_pred cCCccchHhhhcCCCCCEEEcCCceeecccc----ccCCCCCCEEEcCCCCCCcccc----ccCCCCcEEEccCcccCCc
Q 041570 139 LFKNSISSSLARLSSLISLSLSHNKLEGSIE----VKGSSKLQSLDLSHNNLNRIIL----SSLTTLSELYLSGMGFEGT 210 (394)
Q Consensus 139 ~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~~~----~~l~~L~~L~l~~~~~~~~ 210 (394)
.+.+..|..|+++++|++|++++|.+++.++ +..+++|++|++++|.+.+..+ ..+++|++|++++|.+++.
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 9998889999999999999999999987544 6678999999999999988754 3789999999999999877
Q ss_pred cChhhhcCC--CCCCEEECCCCCCCCCcccCcCCCCCCC------cCEEEcCCCCCCCChhhhhhc--------------
Q 041570 211 FDVQEFDSL--SNLEELYLSNNKGINNFVVPQDYRGLSK------LKRLDLSGVGIRDGSELLRSM-------------- 268 (394)
Q Consensus 211 ~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~~~l~~------L~~L~l~~n~~~~~~~~~~~l-------------- 268 (394)
.+ ..+..+ ++|++|+++.|.+. +..+. .+..+.+ |++|++++|.+++. ++..+
T Consensus 164 ~~-~~l~~l~~~~L~~L~L~~n~l~-~~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~~~l~~~~l~~L~l 238 (844)
T 3j0a_A 164 CE-HELEPLQGKTLSFFSLAANSLY-SRVSV-DWGKCMNPFRNMVLEILDVSGNGWTVD--ITGNFSNAISKSQAFSLIL 238 (844)
T ss_dssp CS-GGGHHHHHCSSCCCEECCSBSC-CCCCC-CCCSSSCTTTTCCBSEEBCSSCCSSTT--TTSGGGGTSCSCCBSEEEC
T ss_pred CH-HHcccccCCccceEECCCCccc-ccccc-chhhcCCccccCceeEEecCCCcCchh--HHHHHHhhcCcccccceec
Confidence 66 666666 78999999998887 55444 4444443 88888888876543 22221
Q ss_pred ----------------------CC--CCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCe
Q 041570 269 ----------------------GS--FPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKN 324 (394)
Q Consensus 269 ----------------------~~--~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~ 324 (394)
.. .++|++|++++|.+.+..+..+..+++|+.|++++|.+++..|..+..+++|++
T Consensus 239 ~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 318 (844)
T 3j0a_A 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV 318 (844)
T ss_dssp CSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCE
T ss_pred ccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCE
Confidence 11 257888999999888888888888889999999999988877888888889999
Q ss_pred EecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccccccccccCCCcEEeccccccce
Q 041570 325 LSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLSYSILNA 386 (394)
Q Consensus 325 L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~l~g 386 (394)
|++++|.+++..|. .+..+++|++|++++ |.+. +..+..+..+++|+.|++++|.+++
T Consensus 319 L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~--N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 319 LNLSYNLLGELYSS-NFYGLPKVAYIDLQK--NHIA-IIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp EEEESCCCSCCCSC-SCSSCTTCCEEECCS--CCCC-CCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred EECCCCCCCccCHH-HhcCCCCCCEEECCC--CCCC-ccChhhhcCCCCCCEEECCCCCCCc
Confidence 99999988866566 788888899999988 8887 5545678888888888888888775
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.8e-32 Score=265.80 Aligned_cols=295 Identities=21% Similarity=0.221 Sum_probs=214.1
Q ss_pred CcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhc
Q 041570 71 GRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLAR 150 (394)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~ 150 (394)
.+++.++++++.++... +..|..+++|++|++++|.+++..|.. ++++++|++|++++|.++ .+|.. .
T Consensus 21 ~~L~~L~Ls~n~i~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~-~lp~~--~ 88 (520)
T 2z7x_B 21 QKTTILNISQNYISELW-----TSDILSLSKLRILIISHNRIQYLDISV----FKFNQELEYLDLSHNKLV-KISCH--P 88 (520)
T ss_dssp TTCSEEECCSSCCCCCC-----HHHHTTCTTCCEEECCSSCCCEEEGGG----GTTCTTCCEEECCSSCCC-EEECC--C
T ss_pred ccccEEECCCCcccccC-----hhhccccccccEEecCCCccCCcChHH----hhcccCCCEEecCCCcee-ecCcc--c
Confidence 57888888888775432 234677888999999998888766654 788889999999999887 56665 7
Q ss_pred CCCCCEEEcCCceeec-ccc--ccCCCCCCEEEcCCCCCCccccccCCCC--cEEEccCccc--CCccChhhhcCC----
Q 041570 151 LSSLISLSLSHNKLEG-SIE--VKGSSKLQSLDLSHNNLNRIILSSLTTL--SELYLSGMGF--EGTFDVQEFDSL---- 219 (394)
Q Consensus 151 l~~L~~L~l~~n~l~~-~~~--~~~~~~L~~L~l~~n~l~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~~~~l---- 219 (394)
+++|++|++++|.+++ .+| +..+++|++|++++|.+.+.....+++| ++|++++|.+ .+..| ..+..+
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~-~~l~~l~~~~ 167 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDP-EGLQDFNTES 167 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCT-TTTTTCCEEE
T ss_pred cCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeeccccccccccc-ccccccccce
Confidence 8889999999998876 343 6778889999999988888666677788 9999998887 44444 333332
Q ss_pred -------------------------------------------------------------------------------C
Q 041570 220 -------------------------------------------------------------------------------S 220 (394)
Q Consensus 220 -------------------------------------------------------------------------------~ 220 (394)
+
T Consensus 168 l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 247 (520)
T 2z7x_B 168 LHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247 (520)
T ss_dssp EEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTS
T ss_pred EEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhC
Confidence 2
Q ss_pred CCCEEECCCCCCCCCcccCcC----------------------------------------------------CCCCCCc
Q 041570 221 NLEELYLSNNKGINNFVVPQD----------------------------------------------------YRGLSKL 248 (394)
Q Consensus 221 ~L~~L~l~~n~~~~~~~~~~~----------------------------------------------------~~~l~~L 248 (394)
+|++|++++|++. +.+|... ...+++|
T Consensus 248 ~L~~L~l~~n~l~-~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L 326 (520)
T 2z7x_B 248 TVWYFSISNVKLQ-GQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPF 326 (520)
T ss_dssp SCSEEEEEEEEEE-SCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCC
T ss_pred cccEEEeeccccc-CccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcc
Confidence 5677777776665 4444421 0455667
Q ss_pred CEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCc--cchhhcCCCCCCCEEEcCCCcCChhhhhc-hhccCCCCeE
Q 041570 249 KRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTA--TTTQELHNFTNLEFLNLRHSSLDINLLKT-IASFTSLKNL 325 (394)
Q Consensus 249 ~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~n~l~~~~~~~-l~~~~~L~~L 325 (394)
++|++++|.+++. +|..+..+++|++|++++|++++ .+|..+..+++|+.|++++|.+++.+|.. +..+++|++|
T Consensus 327 ~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L 404 (520)
T 2z7x_B 327 LHLDFSNNLLTDT--VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404 (520)
T ss_dssp CEEECCSSCCCTT--TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEE
T ss_pred cEEEeECCccChh--hhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEE
Confidence 7777777777765 56667777777777777777775 44566777777777777777777645543 6667777777
Q ss_pred ecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccccccccccCCCcEEeccccccceeEe
Q 041570 326 SMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLSYSILNANCT 389 (394)
Q Consensus 326 ~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~l~g~~~ 389 (394)
++++|.+++.+|. .+. ++|++|++++ |.++ .+|..+..+++|+.|++++|++++ +|
T Consensus 405 ~Ls~N~l~~~~~~-~l~--~~L~~L~Ls~--N~l~--~ip~~~~~l~~L~~L~L~~N~l~~-l~ 460 (520)
T 2z7x_B 405 NMSSNILTDTIFR-CLP--PRIKVLDLHS--NKIK--SIPKQVVKLEALQELNVASNQLKS-VP 460 (520)
T ss_dssp ECCSSCCCGGGGG-SCC--TTCCEEECCS--SCCC--CCCGGGGGCTTCCEEECCSSCCCC-CC
T ss_pred ECcCCCCCcchhh-hhc--ccCCEEECCC--Cccc--ccchhhhcCCCCCEEECCCCcCCc-cC
Confidence 7777777766665 332 6788888888 7777 788777788899999999998884 44
No 22
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=1.3e-33 Score=258.54 Aligned_cols=277 Identities=17% Similarity=0.173 Sum_probs=155.7
Q ss_pred CCccCHHHHHHHHHhhhhcC-CCC-CCCCCC---CCCCCCCccceeEecC--------CCCcEEEEecCCCCCCCCCCCc
Q 041570 24 SEGCLEHERFALLRLRHFFS-SPS-RLQNWE---DEQGDFCQWESVECSN--------TTGRVIGLDLSDTRNEDLGEGY 90 (394)
Q Consensus 24 ~~~~~~~~~~al~~~~~~~~-~~~-~~~~W~---~~~~~~c~w~gv~c~~--------~~~~v~~l~l~~~~~~~~~~~~ 90 (394)
..++..+|++||++|+..+. ++. ....|. ....++|.|.|+.|.. ...+|+.+++++++++..+.
T Consensus 21 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~lp~-- 98 (328)
T 4fcg_A 21 GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPD-- 98 (328)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSSCCS--
T ss_pred ccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCchhcCh--
Confidence 45667889999999999884 444 567784 3467899999999952 23566777777666543222
Q ss_pred cccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeeccccc
Q 041570 91 LNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIEV 170 (394)
Q Consensus 91 l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~ 170 (394)
.+..+++|++|++++|.++ .+|.. ++.+++|++|++++|.++ .+|..++++++|++|++++|.+.+.+|.
T Consensus 99 ----~l~~l~~L~~L~L~~n~l~-~lp~~----~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~ 168 (328)
T 4fcg_A 99 ----QAFRLSHLQHMTIDAAGLM-ELPDT----MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE 168 (328)
T ss_dssp ----CGGGGTTCSEEEEESSCCC-CCCSC----GGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCS
T ss_pred ----hhhhCCCCCEEECCCCCcc-chhHH----HhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccCh
Confidence 1344666666666666666 44433 556666666666666666 5566666666666666666655554441
Q ss_pred cCCCCCCEEEcCCCCCCccccccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCE
Q 041570 171 KGSSKLQSLDLSHNNLNRIILSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKR 250 (394)
Q Consensus 171 ~~~~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~ 250 (394)
. +....+ . ..+..+++|++|++++|.+. .+|. .+..+++|++
T Consensus 169 ~----~~~~~~------------------------------~-~~~~~l~~L~~L~L~~n~l~--~lp~-~l~~l~~L~~ 210 (328)
T 4fcg_A 169 P----LASTDA------------------------------S-GEHQGLVNLQSLRLEWTGIR--SLPA-SIANLQNLKS 210 (328)
T ss_dssp C----SEEEC-------------------------------C-CCEEESTTCCEEEEEEECCC--CCCG-GGGGCTTCCE
T ss_pred h----Hhhccc------------------------------h-hhhccCCCCCEEECcCCCcC--cchH-hhcCCCCCCE
Confidence 1 000000 0 12333444444444444443 3332 3444455555
Q ss_pred EEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCc
Q 041570 251 LDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSC 330 (394)
Q Consensus 251 L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n 330 (394)
|++++|.+++ +|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|
T Consensus 211 L~L~~N~l~~---l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 211 LKIRNSPLSA---LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp EEEESSCCCC---CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred EEccCCCCCc---CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence 5555555543 3334445555555555555555555555555555555555555555555555555555555555555
Q ss_pred ccceeechhhccCCCCCcEEEcCC
Q 041570 331 EVNGVLDGQGFLNFKSLERLDMGG 354 (394)
Q Consensus 331 ~l~~~ip~~~~~~~~~L~~L~l~~ 354 (394)
.+.+.+|. .+.++++|+.+++..
T Consensus 288 ~~~~~iP~-~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 288 VNLSRLPS-LIAQLPANCIILVPP 310 (328)
T ss_dssp TTCCCCCG-GGGGSCTTCEEECCG
T ss_pred CchhhccH-HHhhccCceEEeCCH
Confidence 55555555 455555555555554
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.1e-32 Score=276.32 Aligned_cols=301 Identities=19% Similarity=0.209 Sum_probs=210.4
Q ss_pred CcEEEEecCCCCCCCC--CCC-----------cccccc-CCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcc
Q 041570 71 GRVIGLDLSDTRNEDL--GEG-----------YLNAFL-FTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLR 136 (394)
Q Consensus 71 ~~v~~l~l~~~~~~~~--~~~-----------~l~~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~ 136 (394)
.+++.|++++|.++.. ... .++... |..+++|++|++++|.+.+.+|.. ++++++|++|+++
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~----l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF----LYDLPELQSLNIA 523 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG----GGGCSSCCEEECT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH----HhCCCCCCEEECc
Confidence 4688999999988641 000 123322 338999999999999999988865 8889999999999
Q ss_pred ccc-CCc-cchHhhhcCC-------CCCEEEcCCceeecccc----ccCCCCCCEEEcCCCCCCccccc--cCCCCcEEE
Q 041570 137 MNL-FKN-SISSSLARLS-------SLISLSLSHNKLEGSIE----VKGSSKLQSLDLSHNNLNRIILS--SLTTLSELY 201 (394)
Q Consensus 137 ~n~-~~~-~~p~~l~~l~-------~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~~~~--~l~~L~~L~ 201 (394)
+|. ++| .+|..+++++ +|++|++++|.++. +| +..+++|++|++++|+++ .+|. .+++|+.|+
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~-ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~ 601 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLK 601 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB-CCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEE
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc-cCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEE
Confidence 998 888 7888777665 89999999998884 54 467788888888888887 4444 667788888
Q ss_pred ccCcccCCccChhhhcCCCC-CCEEECCCCCCCCCcccCcCCCCCC-------------------------------CcC
Q 041570 202 LSGMGFEGTFDVQEFDSLSN-LEELYLSNNKGINNFVVPQDYRGLS-------------------------------KLK 249 (394)
Q Consensus 202 l~~~~~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~~l~-------------------------------~L~ 249 (394)
+++|.+. .+| ..+..+++ |++|++++|.+. .+|. .+...+ +|+
T Consensus 602 Ls~N~l~-~lp-~~l~~l~~~L~~L~Ls~N~L~--~lp~-~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~ 676 (876)
T 4ecn_A 602 LDYNQIE-EIP-EDFCAFTDQVEGLGFSHNKLK--YIPN-IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676 (876)
T ss_dssp CCSSCCS-CCC-TTSCEECTTCCEEECCSSCCC--SCCS-CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEE
T ss_pred CcCCccc-cch-HHHhhccccCCEEECcCCCCC--cCch-hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcC
Confidence 8888877 666 56777777 888888777765 3443 333332 444
Q ss_pred EEEcCCCCCCCChhhhhhc-CCCCCCCEEeCcCCCCCccchhhcCC-------CCCCCEEEcCCCcCChhhhhchh--cc
Q 041570 250 RLDLSGVGIRDGSELLRSM-GSFPSLKTLFLEANNFTATTTQELHN-------FTNLEFLNLRHSSLDINLLKTIA--SF 319 (394)
Q Consensus 250 ~L~l~~n~~~~~~~~~~~l-~~~~~L~~L~l~~n~~~~~~~~~l~~-------~~~L~~L~l~~n~l~~~~~~~l~--~~ 319 (394)
+|++++|.++. +|..+ ..+++|++|++++|+++...+..+.. +++|+.|++++|.++ .+|..+. .+
T Consensus 677 ~L~Ls~N~L~~---lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l 752 (876)
T 4ecn_A 677 TVTLSYNEIQK---FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTL 752 (876)
T ss_dssp EEECCSSCCCS---CCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTC
T ss_pred EEEccCCcCCc---cCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccC
Confidence 55555554443 33332 25566777777777666332222221 127777777777777 5666665 77
Q ss_pred CCCCeEecCCcccceeechhhccCCCCCcEEEcCCCC----cccCCccccccccccCCCcEEeccccccceeEee
Q 041570 320 TSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGAR----NALNASFLQIIGESMASLKHLSLSYSILNANCTI 390 (394)
Q Consensus 320 ~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~----n~l~~g~l~~~~~~~~~L~~L~l~~n~l~g~~~~ 390 (394)
++|+.|++++|.+++ +|. .+..+++|+.|++++++ |.+. +.+|..+..+++|+.|+|++|++ +.+|.
T Consensus 753 ~~L~~L~Ls~N~L~~-lp~-~l~~L~~L~~L~Ls~N~~ls~N~l~-~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~ 823 (876)
T 4ecn_A 753 PYLSNMDVSYNCFSS-FPT-QPLNSSQLKAFGIRHQRDAEGNRIL-RQWPTGITTCPSLIQLQIGSNDI-RKVDE 823 (876)
T ss_dssp TTCCEEECCSSCCSS-CCC-GGGGCTTCCEEECCCCBCTTCCBCC-CCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred CCcCEEEeCCCCCCc-cch-hhhcCCCCCEEECCCCCCccccccc-ccChHHHhcCCCCCEEECCCCCC-CccCH
Confidence 788888888888775 666 56677888888886533 6666 77777788888888888888887 66664
No 24
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=2.8e-31 Score=243.62 Aligned_cols=267 Identities=19% Similarity=0.196 Sum_probs=226.2
Q ss_pred CCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeeccccccCCCCCCEE
Q 041570 100 QQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIEVKGSSKLQSL 179 (394)
Q Consensus 100 ~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L 179 (394)
+.+++|++++|.+++..+.. ++++++|++|++++|.+++..|..++++++|++|++++|.++. +|....++|++|
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~~L~~L 126 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGD----FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMPKTLQEL 126 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTT----TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCCTTCCEE
T ss_pred CCCeEEECCCCcCCEeChhh----hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhcccccEE
Confidence 68999999999998876644 8899999999999999998879999999999999999999985 664445899999
Q ss_pred EcCCCCCCccccc---cCCCCcEEEccCcccCC--ccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcC
Q 041570 180 DLSHNNLNRIILS---SLTTLSELYLSGMGFEG--TFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLS 254 (394)
Q Consensus 180 ~l~~n~l~~~~~~---~l~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~ 254 (394)
++++|.+.+..+. .+++|++|++++|.+.. ..+ ..+..+++|++|++++|.+. .++. .+. ++|++|+++
T Consensus 127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~l~~n~l~--~l~~-~~~--~~L~~L~l~ 200 (330)
T 1xku_A 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN-GAFQGMKKLSYIRIADTNIT--TIPQ-GLP--PSLTELHLD 200 (330)
T ss_dssp ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCT-TGGGGCTTCCEEECCSSCCC--SCCS-SCC--TTCSEEECT
T ss_pred ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcCh-hhccCCCCcCEEECCCCccc--cCCc-ccc--ccCCEEECC
Confidence 9999999987654 78999999999999863 333 77899999999999999987 4554 222 799999999
Q ss_pred CCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccce
Q 041570 255 GVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNG 334 (394)
Q Consensus 255 ~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 334 (394)
+|.+++. .+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.++
T Consensus 201 ~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~- 276 (330)
T 1xku_A 201 GNKITKV--DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS- 276 (330)
T ss_dssp TSCCCEE--CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC-
T ss_pred CCcCCcc--CHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC-
Confidence 9999886 6778999999999999999999888888999999999999999999 78888999999999999999998
Q ss_pred eechhhccC------CCCCcEEEcCCCCcccCCccc-cccccccCCCcEEeccccc
Q 041570 335 VLDGQGFLN------FKSLERLDMGGARNALNASFL-QIIGESMASLKHLSLSYSI 383 (394)
Q Consensus 335 ~ip~~~~~~------~~~L~~L~l~~~~n~l~~g~l-~~~~~~~~~L~~L~l~~n~ 383 (394)
.++...+.. .+.++.+++++ |.+....+ |..+..+++++.+++++|+
T Consensus 277 ~~~~~~f~~~~~~~~~~~l~~l~l~~--N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 277 AIGSNDFCPPGYNTKKASYSGVSLFS--NPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCCTTSSSCSSCCTTSCCCSEEECCS--SSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccChhhcCCcccccccccccceEeec--CcccccccCccccccccceeEEEecccC
Confidence 444435532 37899999999 88763334 4778889999999999985
No 25
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.2e-32 Score=269.40 Aligned_cols=168 Identities=21% Similarity=0.266 Sum_probs=137.7
Q ss_pred hhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhh-hhcCCCCCCCEEeCcCCCCCccchhhcC
Q 041570 215 EFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELL-RSMGSFPSLKTLFLEANNFTATTTQELH 293 (394)
Q Consensus 215 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~l~ 293 (394)
.+..+++|++|++++|.+. .++. .+..+++|++|++++|.+.+. .+ ..+..+++|++|++++|.+++..|..+.
T Consensus 368 ~~~~~~~L~~L~l~~n~l~--~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 442 (570)
T 2z63_A 368 SDFGTTSLKYLDLSFNGVI--TMSS-NFLGLEQLEHLDFQHSNLKQM--SEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442 (570)
T ss_dssp HHHTCSCCCEEECCSCSEE--EEEE-EEETCTTCCEEECTTSEEESC--TTSCTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred cccccCccCEEECCCCccc--cccc-cccccCCCCEEEccCCccccc--cchhhhhcCCCCCEEeCcCCcccccchhhhh
Confidence 3445555555555555544 2333 267778888888888887764 33 3577888999999999999888888899
Q ss_pred CCCCCCEEEcCCCcCC-hhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccccccccccC
Q 041570 294 NFTNLEFLNLRHSSLD-INLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMA 372 (394)
Q Consensus 294 ~~~~L~~L~l~~n~l~-~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~ 372 (394)
.+++|+.|++++|.++ +.+|..+..+++|++|++++|.+++..|. .+..+++|++|++++ |.++ +..|..+..++
T Consensus 443 ~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~--n~l~-~~~~~~~~~l~ 518 (570)
T 2z63_A 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT-AFNSLSSLQVLNMAS--NQLK-SVPDGIFDRLT 518 (570)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCS--SCCS-CCCTTTTTTCT
T ss_pred cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChh-hhhcccCCCEEeCCC--CcCC-CCCHHHhhccc
Confidence 9999999999999997 57888999999999999999999977777 888999999999999 9998 66667889999
Q ss_pred CCcEEeccccccceeEeec
Q 041570 373 SLKHLSLSYSILNANCTIL 391 (394)
Q Consensus 373 ~L~~L~l~~n~l~g~~~~~ 391 (394)
+|+.|++++|+++|.||..
T Consensus 519 ~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 519 SLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp TCCEEECCSSCBCCCTTTT
T ss_pred CCcEEEecCCcccCCCcch
Confidence 9999999999999998853
No 26
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.8e-31 Score=243.76 Aligned_cols=278 Identities=18% Similarity=0.260 Sum_probs=174.0
Q ss_pred cEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcC
Q 041570 72 RVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARL 151 (394)
Q Consensus 72 ~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l 151 (394)
+++.++++++.+++... +..+++|++|++++|.+++. + .+..+++|++|++++|.+.+ ++. +..+
T Consensus 67 ~L~~L~l~~n~i~~~~~-------~~~l~~L~~L~L~~n~i~~~-~-----~~~~l~~L~~L~l~~n~i~~-~~~-~~~l 131 (347)
T 4fmz_A 67 NLEYLNLNGNQITDISP-------LSNLVKLTNLYIGTNKITDI-S-----ALQNLTNLRELYLNEDNISD-ISP-LANL 131 (347)
T ss_dssp TCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSSCCCCC-G-----GGTTCTTCSEEECTTSCCCC-CGG-GTTC
T ss_pred CccEEEccCCccccchh-------hhcCCcCCEEEccCCcccCc-h-----HHcCCCcCCEEECcCCcccC-chh-hccC
Confidence 45666666665543221 45566666666666665542 2 15666666666666666653 232 5566
Q ss_pred CCCCEEEcCCceeecccc-ccCCCCCCEEEcCCCCCCcccc-ccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCC
Q 041570 152 SSLISLSLSHNKLEGSIE-VKGSSKLQSLDLSHNNLNRIIL-SSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSN 229 (394)
Q Consensus 152 ~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 229 (394)
++|++|++++|.....++ +..+++|++|++++|.+.+..+ ..+++|++|++++|.+.+ ++ .+..+++|+++++++
T Consensus 132 ~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~ 208 (347)
T 4fmz_A 132 TKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIED-IS--PLASLTSLHYFTAYV 208 (347)
T ss_dssp TTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCC-CG--GGGGCTTCCEEECCS
T ss_pred CceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccc-cc--cccCCCccceeeccc
Confidence 666666666664333232 5555666666666666655432 266667777777766653 22 156666777777777
Q ss_pred CCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCC
Q 041570 230 NKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLD 309 (394)
Q Consensus 230 n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 309 (394)
|.+. .++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++. +.+..+++|+.|++++|.++
T Consensus 209 n~l~--~~~--~~~~~~~L~~L~l~~n~l~~~---~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~ 278 (347)
T 4fmz_A 209 NQIT--DIT--PVANMTRLNSLKIGNNKITDL---SP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQIS 278 (347)
T ss_dssp SCCC--CCG--GGGGCTTCCEEECCSSCCCCC---GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred CCCC--CCc--hhhcCCcCCEEEccCCccCCC---cc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccC
Confidence 6665 222 156667777777777777663 32 66777777777777777654 34667777777777777777
Q ss_pred hhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccccccccccCCCcEEeccccccc
Q 041570 310 INLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLSYSILN 385 (394)
Q Consensus 310 ~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~l~ 385 (394)
+. +.+..+++|++|++++|.+++..|. .+..+++|++|++++ |.++ +..| +..+++|+.|++++|.++
T Consensus 279 ~~--~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~--n~l~-~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 279 DI--SVLNNLSQLNSLFLNNNQLGNEDME-VIGGLTNLTTLFLSQ--NHIT-DIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCGGGHH-HHHTCTTCSEEECCS--SSCC-CCGG--GGGCTTCSEESSSCC---
T ss_pred CC--hhhcCCCCCCEEECcCCcCCCcChh-HhhccccCCEEEccC--Cccc-cccC--hhhhhccceeehhhhccc
Confidence 53 3466777777777777777755555 667777777777777 7776 4433 667777777777777764
No 27
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.6e-31 Score=268.69 Aligned_cols=307 Identities=25% Similarity=0.255 Sum_probs=174.4
Q ss_pred EEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccch-----------------------------hhh
Q 041570 73 VIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEG-----------------------------LEM 123 (394)
Q Consensus 73 v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~-----------------------------~~~ 123 (394)
++.++++++.+...+ +..+..+++|++|++++|.+++..+... ...
T Consensus 250 L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~ 324 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVG-----NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324 (680)
T ss_dssp CCEEECTTSCCCEEC-----TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTT
T ss_pred CCEEECCCCCcCccC-----cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhh
Confidence 666666666554322 2234556666666666666654433220 002
Q ss_pred hcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeeccc-c---cc--CCCCCCEEEcCCCCCCccccc---cC
Q 041570 124 LSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSI-E---VK--GSSKLQSLDLSHNNLNRIILS---SL 194 (394)
Q Consensus 124 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~-~---~~--~~~~L~~L~l~~n~l~~~~~~---~l 194 (394)
+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.... + +. ..++|+.|++++|++++..+. .+
T Consensus 325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 404 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404 (680)
T ss_dssp TTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTC
T ss_pred cccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCC
Confidence 445566666666666666655556666666666666665432211 1 10 113455555555555554433 45
Q ss_pred CCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCC------------------------CCcccCcCCCCCCCcCE
Q 041570 195 TTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGI------------------------NNFVVPQDYRGLSKLKR 250 (394)
Q Consensus 195 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~------------------------~~~~~~~~~~~l~~L~~ 250 (394)
++|++|++++|.+.+.++...+..+++|++|++++|++. .-...+..+..+++|++
T Consensus 405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence 556666666665554444344555555555555555432 11112224556666666
Q ss_pred EEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccch--------hhcCCCCCCCEEEcCCCcCChhhhhchhccCCC
Q 041570 251 LDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTT--------QELHNFTNLEFLNLRHSSLDINLLKTIASFTSL 322 (394)
Q Consensus 251 L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~--------~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L 322 (394)
|++++|.+++. .+..+..+++|++|++++|++++..+ ..+..+++|+.|++++|.++...+..|..+++|
T Consensus 485 L~Ls~N~l~~i--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L 562 (680)
T 1ziw_A 485 LDLSNNNIANI--NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562 (680)
T ss_dssp EECCSSCCCCC--CTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred EECCCCCCCcC--ChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCc
Confidence 66666666654 34445666666666666666654321 124556666666666666663333346677777
Q ss_pred CeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCcccccccc-ccCCCcEEeccccccceeEee
Q 041570 323 KNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGE-SMASLKHLSLSYSILNANCTI 390 (394)
Q Consensus 323 ~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~-~~~~L~~L~l~~n~l~g~~~~ 390 (394)
++|++++|.++ .+|...+..+++|+.|++++ |.++ +..+..+. .+++|+.+++++|++.|+|+.
T Consensus 563 ~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~L~~--N~l~-~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 563 KIIDLGLNNLN-TLPASVFNNQVSLKSLNLQK--NLIT-SVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CEEECCSSCCC-CCCTTTTTTCTTCCEEECTT--SCCC-BCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred ceeECCCCCCC-cCCHhHhCCCCCCCEEECCC--CcCC-ccChhHhcccccccCEEEccCCCcccCCcc
Confidence 77777777777 44544566777777777777 7777 44445555 677777888888887777764
No 28
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.3e-31 Score=269.46 Aligned_cols=297 Identities=25% Similarity=0.301 Sum_probs=201.6
Q ss_pred CcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhc
Q 041570 71 GRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLAR 150 (394)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~ 150 (394)
.+++.++++++.++... ...|..+++|++|++++|.+++..+.. ++++++|++|++++|.+++..+..|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLP-----AANFTRYSQLTSLDVGFNTISKLEPEL----CQKLPMLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp TTCSEEECCSSCCCCCC-----GGGGGGGTTCSEEECCSSCCCCCCTTH----HHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCcEEECCCCCCCCcC-----HHHHhCCCcCcEEECCCCccCccCHHH----HhcccCcCEEECCCCccCccChhhhcc
Confidence 57899999999875433 345778899999999999988877654 778899999999999888544456888
Q ss_pred CCCCCEEEcCCceeecccc--ccCCCCCCEEEcCCCCCCccccc---cCCCCcEEEccCcccCCccChhhhc--CCCCCC
Q 041570 151 LSSLISLSLSHNKLEGSIE--VKGSSKLQSLDLSHNNLNRIILS---SLTTLSELYLSGMGFEGTFDVQEFD--SLSNLE 223 (394)
Q Consensus 151 l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~--~l~~L~ 223 (394)
+++|++|++++|.+++..+ +..+++|++|++++|.+++..+. .+++|++|++++|.+++..+ ..+. .+++|+
T Consensus 96 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~L~ 174 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS-EELDIFANSSLK 174 (680)
T ss_dssp CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH-HHHGGGTTCEES
T ss_pred CCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCH-HHhhcccccccc
Confidence 9999999999998877544 66778999999999988887655 67888999999888875544 4443 457888
Q ss_pred EEECCCCCCCCCcccCcCCCCC---------------------------CCcCEEEcCCCCCCCChhhhhhcCCCC--CC
Q 041570 224 ELYLSNNKGINNFVVPQDYRGL---------------------------SKLKRLDLSGVGIRDGSELLRSMGSFP--SL 274 (394)
Q Consensus 224 ~L~l~~n~~~~~~~~~~~~~~l---------------------------~~L~~L~l~~n~~~~~~~~~~~l~~~~--~L 274 (394)
+|++++|.+. +..+ ..+..+ ++|++|++++|.+++. .|..+..++ +|
T Consensus 175 ~L~L~~n~l~-~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~--~~~~~~~l~~~~L 250 (680)
T 1ziw_A 175 KLELSSNQIK-EFSP-GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT--SNTTFLGLKWTNL 250 (680)
T ss_dssp EEECTTCCCC-CBCT-TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEE--CTTTTGGGGGSCC
T ss_pred EEECCCCccc-ccCh-hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccccc--ChhHhhccCcCCC
Confidence 8888888776 3222 233322 3456666666666554 444454443 37
Q ss_pred CEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCccccee--------echhhccCCCC
Q 041570 275 KTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGV--------LDGQGFLNFKS 346 (394)
Q Consensus 275 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~--------ip~~~~~~~~~ 346 (394)
++|++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|++|++++|...+. ++...+..+++
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~ 330 (680)
T 1ziw_A 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTT
T ss_pred CEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCC
Confidence 7777777777666666666677777777777777666666666666666666665543321 11123445566
Q ss_pred CcEEEcCCCCcccCCccccccccccCCCcEEecccccc
Q 041570 347 LERLDMGGARNALNASFLQIIGESMASLKHLSLSYSIL 384 (394)
Q Consensus 347 L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~l 384 (394)
|++|++++ |.++ +..+..+..+++|++|++++|.+
T Consensus 331 L~~L~l~~--n~l~-~~~~~~~~~l~~L~~L~Ls~n~~ 365 (680)
T 1ziw_A 331 LEHLNMED--NDIP-GIKSNMFTGLINLKYLSLSNSFT 365 (680)
T ss_dssp CCEEECCS--CCBC-CCCTTTTTTCTTCCEEECTTCBS
T ss_pred CCEEECCC--CccC-CCChhHhccccCCcEEECCCCch
Confidence 66666666 5555 44445555555555555555543
No 29
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.2e-31 Score=265.41 Aligned_cols=304 Identities=25% Similarity=0.260 Sum_probs=228.2
Q ss_pred CcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhc
Q 041570 71 GRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLAR 150 (394)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~ 150 (394)
..++.|+|++|+++... +..|..+++|++|+|++|.+++..+.. |.++++|++|+|++|++++..+..|.+
T Consensus 52 ~~~~~LdLs~N~i~~l~-----~~~f~~l~~L~~L~Ls~N~i~~i~~~~----f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLG-----SYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp TTCCEEECTTSCCCEEC-----TTTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred cCCCEEEeeCCCCCCCC-----HHHHhCCCCCCEEECCCCcCCCcChhH----hcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 46899999999986443 445788999999999999988665543 788999999999999998666667888
Q ss_pred CCCCCEEEcCCceeecccc--ccCCCCCCEEEcCCCCCCcc-ccc---cCCCCcEEEccCcccCCccChhh---------
Q 041570 151 LSSLISLSLSHNKLEGSIE--VKGSSKLQSLDLSHNNLNRI-ILS---SLTTLSELYLSGMGFEGTFDVQE--------- 215 (394)
Q Consensus 151 l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~~---~l~~L~~L~l~~~~~~~~~~~~~--------- 215 (394)
+++|++|++++|.+++..+ +..+++|++|++++|.+.+. .|. .+++|++|++++|.+++..+ ..
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~L~~l~~ 201 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-TDLRVLHQMPL 201 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG-GGGHHHHTCTT
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc-ccccchhhhhh
Confidence 9999999999998887444 66778888888888887654 222 56777777777665432110 00
Q ss_pred --------------------------------------------------------------------------------
Q 041570 216 -------------------------------------------------------------------------------- 215 (394)
Q Consensus 216 -------------------------------------------------------------------------------- 215 (394)
T Consensus 202 ~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l 281 (635)
T 4g8a_A 202 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 281 (635)
T ss_dssp CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGS
T ss_pred hhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccch
Confidence
Q ss_pred ------------------------------------------h-------------------------------------
Q 041570 216 ------------------------------------------F------------------------------------- 216 (394)
Q Consensus 216 ------------------------------------------~------------------------------------- 216 (394)
+
T Consensus 282 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~ 361 (635)
T 4g8a_A 282 TIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 361 (635)
T ss_dssp EEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCS
T ss_pred hhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccC
Confidence 0
Q ss_pred ------cCCCCCCEEECCCCCCCCC------------------------------------------------cccCcCC
Q 041570 217 ------DSLSNLEELYLSNNKGINN------------------------------------------------FVVPQDY 242 (394)
Q Consensus 217 ------~~l~~L~~L~l~~n~~~~~------------------------------------------------~~~~~~~ 242 (394)
..+++|++++++.|.+... ..+...+
T Consensus 362 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 441 (635)
T 4g8a_A 362 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 441 (635)
T ss_dssp CCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTT
T ss_pred CCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccc
Confidence 0123344444444433100 0001123
Q ss_pred CCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCC-CccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCC
Q 041570 243 RGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNF-TATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTS 321 (394)
Q Consensus 243 ~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~-~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 321 (394)
..+++++.++++.|.+.+. .+..+..++++++|++++|.+ .+..|..|..+++|++|++++|++++..|..|.++++
T Consensus 442 ~~l~~l~~l~ls~n~l~~~--~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~ 519 (635)
T 4g8a_A 442 LSLRNLIYLDISHTHTRVA--FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 519 (635)
T ss_dssp TTCTTCCEEECTTSCCEEC--CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred ccccccccccccccccccc--cccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCC
Confidence 3445566666666666655 556677788899999999974 4467888999999999999999999888999999999
Q ss_pred CCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCcccccccccc-CCCcEEeccccccceeEee
Q 041570 322 LKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESM-ASLKHLSLSYSILNANCTI 390 (394)
Q Consensus 322 L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~-~~L~~L~l~~n~l~g~~~~ 390 (394)
|++|+|++|.+++..|. .+..+++|++|++++ |.++ +..|..+..+ ++|++|++++|+++|+|.+
T Consensus 520 L~~L~Ls~N~l~~l~~~-~~~~l~~L~~L~Ls~--N~l~-~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 520 LQVLNMSHNNFFSLDTF-PYKCLNSLQVLDYSL--NHIM-TSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp CCEEECTTSCCCBCCCG-GGTTCTTCCEEECTT--SCCC-BCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred CCEEECCCCcCCCCChh-HHhCCCCCCEEECCC--CcCC-CCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 99999999999965555 889999999999999 9999 7778888887 6899999999999999864
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.5e-31 Score=264.49 Aligned_cols=267 Identities=21% Similarity=0.221 Sum_probs=220.3
Q ss_pred CcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhc
Q 041570 71 GRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLAR 150 (394)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~ 150 (394)
.+++.|+++++.+.... +..|..+++|++|++++|.+++..+.. ++++++|++|+|++|.+++..+..|++
T Consensus 75 ~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~ 145 (597)
T 3oja_B 75 RQVELLNLNDLQIEEID-----TYAFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLERNDLSSLPRGIFHN 145 (597)
T ss_dssp CCCSEEECTTSCCCEEC-----TTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCcEEECCCCCCCCCC-----hHHhcCCCCCCEEECCCCcCCCCCHHH----HcCCCCCCEEEeeCCCCCCCCHHHhcc
Confidence 46788999999875433 335788999999999999999877754 789999999999999999555555789
Q ss_pred CCCCCEEEcCCceeecccc--ccCCCCCCEEEcCCCCCCccccccCCCCcEEEccCcccCCccChhh-------------
Q 041570 151 LSSLISLSLSHNKLEGSIE--VKGSSKLQSLDLSHNNLNRIILSSLTTLSELYLSGMGFEGTFDVQE------------- 215 (394)
Q Consensus 151 l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~------------- 215 (394)
+++|++|++++|.+++..| +..+++|++|++++|.+++..+..+++|+.|++++|.+++...+..
T Consensus 146 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~ 225 (597)
T 3oja_B 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV 225 (597)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCE
T ss_pred CCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccc
Confidence 9999999999999998665 6778999999999999998766677777777777665543110000
Q ss_pred --hcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcC
Q 041570 216 --FDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELH 293 (394)
Q Consensus 216 --~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~ 293 (394)
....++|++|++++|.+. + + ..+..+++|++|++++|.+++. .|..+..+++|++|++++|.+++. |..+.
T Consensus 226 ~~~~~~~~L~~L~L~~n~l~-~--~-~~l~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~ 298 (597)
T 3oja_B 226 VRGPVNVELTILKLQHNNLT-D--T-AWLLNYPGLVEVDLSYNELEKI--MYHPFVKMQRLERLYISNNRLVAL-NLYGQ 298 (597)
T ss_dssp EECSCCSCCCEEECCSSCCC-C--C-GGGGGCTTCSEEECCSSCCCEE--ESGGGTTCSSCCEEECTTSCCCEE-ECSSS
T ss_pred cccccCCCCCEEECCCCCCC-C--C-hhhccCCCCCEEECCCCccCCC--CHHHhcCccCCCEEECCCCCCCCC-Ccccc
Confidence 112357999999999987 3 2 3688999999999999999987 788999999999999999999974 56677
Q ss_pred CCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccC
Q 041570 294 NFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALN 360 (394)
Q Consensus 294 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~ 360 (394)
.+++|+.|++++|.++ .+|..+..+++|++|++++|.+++ +| +..+++|+.|++++ |.++
T Consensus 299 ~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~---~~~~~~L~~L~l~~--N~~~ 358 (597)
T 3oja_B 299 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK---LSTHHTLKNLTLSH--NDWD 358 (597)
T ss_dssp CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC---CCTTCCCSEEECCS--SCEE
T ss_pred cCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC---hhhcCCCCEEEeeC--CCCC
Confidence 8999999999999999 678888999999999999999984 33 46788999999999 8887
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.2e-30 Score=241.00 Aligned_cols=284 Identities=21% Similarity=0.239 Sum_probs=244.1
Q ss_pred CCcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhh
Q 041570 70 TGRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLA 149 (394)
Q Consensus 70 ~~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~ 149 (394)
..+++.++++++.+..... +..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ .+.
T Consensus 43 l~~L~~L~l~~~~i~~~~~-------~~~~~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~L~~n~i~~-~~-~~~ 107 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQG-------IEYLTNLEYLNLNGNQITDISP------LSNLVKLTNLYIGTNKITD-IS-ALQ 107 (347)
T ss_dssp HTTCSEEECCSSCCCCCTT-------GGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCC-CG-GGT
T ss_pred cccccEEEEeCCccccchh-------hhhcCCccEEEccCCccccchh------hhcCCcCCEEEccCCcccC-ch-HHc
Confidence 3468899999988765432 5779999999999999986543 7899999999999999985 44 689
Q ss_pred cCCCCCEEEcCCceeeccccccCCCCCCEEEcCCCCCCccccc--cCCCCcEEEccCcccCCccChhhhcCCCCCCEEEC
Q 041570 150 RLSSLISLSLSHNKLEGSIEVKGSSKLQSLDLSHNNLNRIILS--SLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYL 227 (394)
Q Consensus 150 ~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 227 (394)
++++|++|++++|.+.+..++..+++|++|++++|......+. .+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 108 ~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l 184 (347)
T 4fmz_A 108 NLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSL 184 (347)
T ss_dssp TCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEEEC
T ss_pred CCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh---hccCCCCCEEEc
Confidence 9999999999999999866688899999999999976655544 88999999999999875432 789999999999
Q ss_pred CCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCc
Q 041570 228 SNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSS 307 (394)
Q Consensus 228 ~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 307 (394)
++|.+. .++. +..+++|+++++++|.+.+. +. +..+++|++|++++|.+++..+ +..+++|+.|++++|.
T Consensus 185 ~~n~l~--~~~~--~~~l~~L~~L~l~~n~l~~~---~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 254 (347)
T 4fmz_A 185 NYNQIE--DISP--LASLTSLHYFTAYVNQITDI---TP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQ 254 (347)
T ss_dssp TTSCCC--CCGG--GGGCTTCCEEECCSSCCCCC---GG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred cCCccc--cccc--ccCCCccceeecccCCCCCC---ch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCc
Confidence 999986 3443 78899999999999999875 22 7788999999999999987655 8899999999999999
Q ss_pred CChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccccccccccCCCcEEecccccccee
Q 041570 308 LDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLSYSILNAN 387 (394)
Q Consensus 308 l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~l~g~ 387 (394)
+++. +.+..+++|++|++++|.+++ ++ .+..+++|++|++++ |.++ +..+..+..+++|++|++++|++++.
T Consensus 255 l~~~--~~~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~L~~--n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 255 ISDI--NAVKDLTKLKMLNVGSNQISD-IS--VLNNLSQLNSLFLNN--NQLG-NEDMEVIGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp CCCC--GGGTTCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCS--SCCC-GGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred cCCC--hhHhcCCCcCEEEccCCccCC-Ch--hhcCCCCCCEEECcC--CcCC-CcChhHhhccccCCEEEccCCccccc
Confidence 9863 468899999999999999985 44 478899999999999 9998 77788899999999999999999987
Q ss_pred Ee
Q 041570 388 CT 389 (394)
Q Consensus 388 ~~ 389 (394)
.|
T Consensus 327 ~~ 328 (347)
T 4fmz_A 327 RP 328 (347)
T ss_dssp GG
T ss_pred cC
Confidence 76
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.6e-31 Score=262.72 Aligned_cols=295 Identities=21% Similarity=0.242 Sum_probs=232.1
Q ss_pred CcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhc
Q 041570 71 GRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLAR 150 (394)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~ 150 (394)
.+++.++++++.++... +..|..+++|++|++++|.+++..+.. +.++++|++|++++|.++ .+|.. .
T Consensus 52 ~~L~~L~Ls~N~i~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~-~lp~~--~ 119 (562)
T 3a79_B 52 PRTKALSLSQNSISELR-----MPDISFLSELRVLRLSHNRIRSLDFHV----FLFNQDLEYLDVSHNRLQ-NISCC--P 119 (562)
T ss_dssp TTCCEEECCSSCCCCCC-----GGGTTTCTTCCEEECCSCCCCEECTTT----TTTCTTCCEEECTTSCCC-EECSC--C
T ss_pred CCcCEEECCCCCccccC-----hhhhccCCCccEEECCCCCCCcCCHHH----hCCCCCCCEEECCCCcCC-ccCcc--c
Confidence 57889999999875433 345788999999999999998776654 788999999999999988 67766 7
Q ss_pred CCCCCEEEcCCceeec-ccc--ccCCCCCCEEEcCCCCCCccccccCCCC--cEEEccCccc--CCccChhhhcCCC---
Q 041570 151 LSSLISLSLSHNKLEG-SIE--VKGSSKLQSLDLSHNNLNRIILSSLTTL--SELYLSGMGF--EGTFDVQEFDSLS--- 220 (394)
Q Consensus 151 l~~L~~L~l~~n~l~~-~~~--~~~~~~L~~L~l~~n~l~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~~~~l~--- 220 (394)
+++|++|++++|.+++ ..| +..+++|++|++++|.+++.....+++| ++|++++|.+ ++..+ ..+..+.
T Consensus 120 l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~-~~l~~l~~~~ 198 (562)
T 3a79_B 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGET-ESLQIPNTTV 198 (562)
T ss_dssp CTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSC-CEEEECCEEE
T ss_pred cccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCc-ccccccCcce
Confidence 8999999999999887 333 6778999999999999887666666777 9999999988 54443 3333322
Q ss_pred ------------------------------------------------------------------------------CC
Q 041570 221 ------------------------------------------------------------------------------NL 222 (394)
Q Consensus 221 ------------------------------------------------------------------------------~L 222 (394)
+|
T Consensus 199 l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L 278 (562)
T 3a79_B 199 LHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV 278 (562)
T ss_dssp EEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSE
T ss_pred EEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccc
Confidence 56
Q ss_pred CEEECCCCCCCCCcccCcCC----------------------------------------------------CCCCCcCE
Q 041570 223 EELYLSNNKGINNFVVPQDY----------------------------------------------------RGLSKLKR 250 (394)
Q Consensus 223 ~~L~l~~n~~~~~~~~~~~~----------------------------------------------------~~l~~L~~ 250 (394)
++|++++|.+. +.+|...+ ..+++|++
T Consensus 279 ~~L~l~~n~l~-~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~ 357 (562)
T 3a79_B 279 EYLNIYNLTIT-ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTF 357 (562)
T ss_dssp EEEEEEEEEEC-SCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCE
T ss_pred cEEEEeccEee-ccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceE
Confidence 67777777665 55554221 56778889
Q ss_pred EEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCc--cchhhcCCCCCCCEEEcCCCcCChhhhh-chhccCCCCeEec
Q 041570 251 LDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTA--TTTQELHNFTNLEFLNLRHSSLDINLLK-TIASFTSLKNLSM 327 (394)
Q Consensus 251 L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~n~l~~~~~~-~l~~~~~L~~L~l 327 (394)
|++++|.+++. +|..+..+++|++|++++|++++ ..|..+..+++|+.|++++|.+++.+|. .+..+++|++|++
T Consensus 358 L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l 435 (562)
T 3a79_B 358 LNFTQNVFTDS--VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435 (562)
T ss_dssp EECCSSCCCTT--TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEEC
T ss_pred EECCCCccccc--hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEEC
Confidence 99999988876 77788888899999999998886 3456788889999999999998875555 4777889999999
Q ss_pred CCcccceeechhhccCCCCCcEEEcCCCCcccCCccccccccccCCCcEEeccccccceeEe
Q 041570 328 VSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLSYSILNANCT 389 (394)
Q Consensus 328 ~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~l~g~~~ 389 (394)
++|.+++.+|. .+. ++|++|++++ |.++ .+|..+..+++|++|++++|++++ +|
T Consensus 436 ~~n~l~~~~~~-~l~--~~L~~L~L~~--N~l~--~ip~~~~~l~~L~~L~L~~N~l~~-l~ 489 (562)
T 3a79_B 436 SSNMLTGSVFR-CLP--PKVKVLDLHN--NRIM--SIPKDVTHLQALQELNVASNQLKS-VP 489 (562)
T ss_dssp CSSCCCGGGGS-SCC--TTCSEEECCS--SCCC--CCCTTTTSSCCCSEEECCSSCCCC-CC
T ss_pred CCCCCCcchhh-hhc--CcCCEEECCC--CcCc--ccChhhcCCCCCCEEECCCCCCCC-CC
Confidence 99988877666 332 6899999999 8888 888877799999999999999984 44
No 33
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.98 E-value=1.3e-31 Score=263.99 Aligned_cols=129 Identities=27% Similarity=0.295 Sum_probs=94.8
Q ss_pred CcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhc
Q 041570 71 GRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLAR 150 (394)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~ 150 (394)
.+++.++++++.++..+ ...|..+++|++|++++|.+++..+.. ++++++|++|++++|.+++..|..|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~i~~i~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLG-----SYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSG 98 (570)
T ss_dssp SSCCEEECCSCCCCEEC-----TTTTTTCSSCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccccEEEccCCccCccC-----hhHhhCCCCceEEECCCCcCCccCccc----ccCchhCCEEeCcCCcCCccCHhhhcC
Confidence 46788888888775443 234677888888888888887655543 778888888888888887666677888
Q ss_pred CCCCCEEEcCCceeecccc--ccCCCCCCEEEcCCCCCCcc-ccc---cCCCCcEEEccCcccC
Q 041570 151 LSSLISLSLSHNKLEGSIE--VKGSSKLQSLDLSHNNLNRI-ILS---SLTTLSELYLSGMGFE 208 (394)
Q Consensus 151 l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~~---~l~~L~~L~l~~~~~~ 208 (394)
+++|++|++++|.+++..+ +..+++|++|++++|.+.+. +|. .+++|++|++++|.++
T Consensus 99 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp CTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred ccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence 8888888888888776433 66778888888888877763 343 5677777777777654
No 34
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=6.9e-31 Score=241.16 Aligned_cols=266 Identities=18% Similarity=0.172 Sum_probs=223.1
Q ss_pred CCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeeccccccCCCCCCEE
Q 041570 100 QQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIEVKGSSKLQSL 179 (394)
Q Consensus 100 ~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L 179 (394)
+++++|++++|.+++..+.. +.++++|++|++++|.+++..|..++++++|++|++++|.++. +|....++|++|
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~L~~L 128 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDD----FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLPSSLVEL 128 (332)
T ss_dssp TTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS-CCSSCCTTCCEE
T ss_pred CCCeEEECCCCcCCccCHhH----hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc-cCccccccCCEE
Confidence 68999999999998766644 8899999999999999998889999999999999999999985 554444899999
Q ss_pred EcCCCCCCccccc---cCCCCcEEEccCcccCC--ccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcC
Q 041570 180 DLSHNNLNRIILS---SLTTLSELYLSGMGFEG--TFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLS 254 (394)
Q Consensus 180 ~l~~n~l~~~~~~---~l~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~ 254 (394)
++++|++.+..+. .+++|++|++++|.++. ..+ ..+..+ +|++|++++|++. .+|. .+. ++|++|+++
T Consensus 129 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l-~L~~L~l~~n~l~--~l~~-~~~--~~L~~L~l~ 201 (332)
T 2ft3_A 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP-GAFDGL-KLNYLRISEAKLT--GIPK-DLP--ETLNELHLD 201 (332)
T ss_dssp ECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCT-TSSCSC-CCSCCBCCSSBCS--SCCS-SSC--SSCSCCBCC
T ss_pred ECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCc-ccccCC-ccCEEECcCCCCC--ccCc-ccc--CCCCEEECC
Confidence 9999999877653 78999999999999863 333 667777 9999999999987 4555 332 789999999
Q ss_pred CCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccce
Q 041570 255 GVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNG 334 (394)
Q Consensus 255 ~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 334 (394)
+|.+++. .+..+..+++|++|++++|++++..+..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+++
T Consensus 202 ~n~i~~~--~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 202 HNKIQAI--ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp SSCCCCC--CTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB
T ss_pred CCcCCcc--CHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCc
Confidence 9999986 5678899999999999999999988888999999999999999999 788889999999999999999984
Q ss_pred eechhhccC------CCCCcEEEcCCCCcccCCcc-ccccccccCCCcEEeccccc
Q 041570 335 VLDGQGFLN------FKSLERLDMGGARNALNASF-LQIIGESMASLKHLSLSYSI 383 (394)
Q Consensus 335 ~ip~~~~~~------~~~L~~L~l~~~~n~l~~g~-l~~~~~~~~~L~~L~l~~n~ 383 (394)
++...+.. .+.|+.|++++ |.+.... .|..+..+++|+.+++++|+
T Consensus 279 -~~~~~~~~~~~~~~~~~l~~L~l~~--N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 279 -VGVNDFCPVGFGVKRAYYNGISLFN--NPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp -CCTTSSSCSSCCSSSCCBSEEECCS--SSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred -cChhHccccccccccccccceEeec--CcccccccCcccccccchhhhhhccccc
Confidence 44435543 36799999999 7765333 44778889999999999884
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.98 E-value=4.9e-30 Score=246.35 Aligned_cols=281 Identities=24% Similarity=0.361 Sum_probs=156.0
Q ss_pred CcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhc
Q 041570 71 GRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLAR 150 (394)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~ 150 (394)
.+++.++++++.+++... +..+++|++|++++|.+++..+ +.++++|++|++++|.+++. +. +.+
T Consensus 68 ~~L~~L~Ls~n~l~~~~~-------~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~-~~-~~~ 132 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP-------LKNLTKLVDILMNNNQIADITP------LANLTNLTGLTLFNNQITDI-DP-LKN 132 (466)
T ss_dssp TTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCC-GG-GTT
T ss_pred cCCCEEECCCCccCCchh-------hhccccCCEEECCCCccccChh------hcCCCCCCEEECCCCCCCCC-hH-HcC
Confidence 457777777777654321 4566667777776666655433 45666666666666666533 22 555
Q ss_pred CCCCCEEEcCCceeeccc---------------------cccCCCCCCEEEcCCCCCCcccc-ccCCCCcEEEccCcccC
Q 041570 151 LSSLISLSLSHNKLEGSI---------------------EVKGSSKLQSLDLSHNNLNRIIL-SSLTTLSELYLSGMGFE 208 (394)
Q Consensus 151 l~~L~~L~l~~n~l~~~~---------------------~~~~~~~L~~L~l~~n~l~~~~~-~~l~~L~~L~l~~~~~~ 208 (394)
+++|++|++++|.+.+.. ++..+++|++|++++|.+.+... ..+++|++|++++|.+.
T Consensus 133 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~ 212 (466)
T 1o6v_A 133 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS 212 (466)
T ss_dssp CTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC
T ss_pred CCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccc
Confidence 666666666665554421 12334555555555555544321 14445555555555444
Q ss_pred CccC-------------------hhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcC
Q 041570 209 GTFD-------------------VQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMG 269 (394)
Q Consensus 209 ~~~~-------------------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~ 269 (394)
+..+ ...+..+++|++|++++|.+. + .+ .+..+++|++|++++|.+++. +. +.
T Consensus 213 ~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~-~-~~--~~~~l~~L~~L~l~~n~l~~~---~~-~~ 284 (466)
T 1o6v_A 213 DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS-N-LA--PLSGLTKLTELKLGANQISNI---SP-LA 284 (466)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC-C-CG--GGTTCTTCSEEECCSSCCCCC---GG-GT
T ss_pred ccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccc-c-ch--hhhcCCCCCEEECCCCccCcc---cc-cc
Confidence 3222 012344444555555544443 1 11 144555555555555555543 22 45
Q ss_pred CCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcE
Q 041570 270 SFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLER 349 (394)
Q Consensus 270 ~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~ 349 (394)
.+++|++|++++|++++..+ +..+++|+.|++++|.+++..| +..+++|++|++++|.+++. + .+..+++|++
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~--~l~~l~~L~~ 357 (466)
T 1o6v_A 285 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-S--SLANLTNINW 357 (466)
T ss_dssp TCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-G--GGTTCTTCCE
T ss_pred CCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-h--hhccCCCCCE
Confidence 55566666666666555433 4556666666666666665444 45666666666666666643 2 3566677777
Q ss_pred EEcCCCCcccCCccccccccccCCCcEEeccccccce
Q 041570 350 LDMGGARNALNASFLQIIGESMASLKHLSLSYSILNA 386 (394)
Q Consensus 350 L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~l~g 386 (394)
|++++ |.++ +..| +..+++|+.|++++|.+++
T Consensus 358 L~l~~--n~l~-~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 358 LSAGH--NQIS-DLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp EECCS--SCCC-BCGG--GTTCTTCCEEECCCEEEEC
T ss_pred EeCCC--CccC-ccch--hhcCCCCCEEeccCCcccC
Confidence 77777 6666 5554 6667777777777777766
No 36
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=5.9e-32 Score=246.00 Aligned_cols=250 Identities=20% Similarity=0.271 Sum_probs=210.1
Q ss_pred CCCCEEeccCCcCCC--ccccchhhhhcCCCCCcEEEccc-ccCCccchHhhhcCCCCCEEEcCCceeecccc--ccCCC
Q 041570 100 QQLESLILSNNSIAG--CVENEGLEMLSRLSNLKFLDLRM-NLFKNSISSSLARLSSLISLSLSHNKLEGSIE--VKGSS 174 (394)
Q Consensus 100 ~~L~~L~l~~~~l~~--~~~~~~~~~l~~l~~L~~L~L~~-n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~ 174 (394)
.++++|+++++.+++ .+|.. +.++++|++|++++ |.+.+.+|..++++++|++|++++|.+++.+| +.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~----l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--- 122 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS----LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS--- 122 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG----GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG---
T ss_pred ceEEEEECCCCCccCCcccChh----HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh---
Confidence 467778888887777 55543 67778888888874 77777777777777888888777777776554 33
Q ss_pred CCCEEEcCCCCCCccccccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCC-CcCEEEc
Q 041570 175 KLQSLDLSHNNLNRIILSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLS-KLKRLDL 253 (394)
Q Consensus 175 ~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~-~L~~L~l 253 (394)
.+++|++|++++|.+++.+| ..++.+++|++|++++|++. +.+|. .+..++ +|++|++
T Consensus 123 ------------------~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~-~~~p~-~l~~l~~~L~~L~L 181 (313)
T 1ogq_A 123 ------------------QIKTLVTLDFSYNALSGTLP-PSISSLPNLVGITFDGNRIS-GAIPD-SYGSFSKLFTSMTI 181 (313)
T ss_dssp ------------------GCTTCCEEECCSSEEESCCC-GGGGGCTTCCEEECCSSCCE-EECCG-GGGCCCTTCCEEEC
T ss_pred ------------------CCCCCCEEeCCCCccCCcCC-hHHhcCCCCCeEECcCCccc-CcCCH-HHhhhhhcCcEEEC
Confidence 44556666666666666666 78899999999999999987 67776 788887 9999999
Q ss_pred CCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccc
Q 041570 254 SGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVN 333 (394)
Q Consensus 254 ~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 333 (394)
++|.+++. +|..+..++ |++|++++|.+++..|..+..+++|+.|++++|.+++.+|. +..+++|++|++++|.++
T Consensus 182 ~~N~l~~~--~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~ 257 (313)
T 1ogq_A 182 SRNRLTGK--IPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp CSSEEEEE--CCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCE
T ss_pred cCCeeecc--CChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCccc
Confidence 99999877 788888887 99999999999999999999999999999999999977776 788999999999999999
Q ss_pred eeechhhccCCCCCcEEEcCCCCcccCCccccccccccCCCcEEeccccc-cce
Q 041570 334 GVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLSYSI-LNA 386 (394)
Q Consensus 334 ~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~-l~g 386 (394)
+.+|. .+..+++|++|++++ |.++ |.+|.. ..+++|+.+++++|+ +.|
T Consensus 258 ~~~p~-~l~~l~~L~~L~Ls~--N~l~-~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 258 GTLPQ-GLTQLKFLHSLNVSF--NNLC-GEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp ECCCG-GGGGCTTCCEEECCS--SEEE-EECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred CcCCh-HHhcCcCCCEEECcC--Cccc-ccCCCC-ccccccChHHhcCCCCccC
Confidence 99998 889999999999999 9999 999976 889999999999997 555
No 37
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=1.3e-29 Score=243.46 Aligned_cols=215 Identities=26% Similarity=0.348 Sum_probs=170.3
Q ss_pred hcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeeccccccCCCCCCEEEcCCCCCCccc-cccCCCCcEEEc
Q 041570 124 LSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIEVKGSSKLQSLDLSHNNLNRII-LSSLTTLSELYL 202 (394)
Q Consensus 124 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~L~~L~l 202 (394)
+.++++|++|++++|.+.+ ++ .+.++++|++|++++|.+.+..++..+++|++|++++|++.+.. ...+++|++|++
T Consensus 173 ~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l 250 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSD-IS-VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDL 250 (466)
T ss_dssp GTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred hccCCCCCEEECcCCcCCC-Ch-hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEEC
Confidence 3445555555666555543 22 35566667777777776666555666677777777777776642 227889999999
Q ss_pred cCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCC
Q 041570 203 SGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEAN 282 (394)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n 282 (394)
++|.+.+..+ +..+++|++|++++|.+. .+++ +..+++|++|++++|.+++. +. +..+++|++|++++|
T Consensus 251 ~~n~l~~~~~---~~~l~~L~~L~l~~n~l~--~~~~--~~~l~~L~~L~L~~n~l~~~---~~-~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 251 ANNQISNLAP---LSGLTKLTELKLGANQIS--NISP--LAGLTALTNLELNENQLEDI---SP-ISNLKNLTYLTLYFN 319 (466)
T ss_dssp CSSCCCCCGG---GTTCTTCSEEECCSSCCC--CCGG--GTTCTTCSEEECCSSCCSCC---GG-GGGCTTCSEEECCSS
T ss_pred CCCccccchh---hhcCCCCCEEECCCCccC--cccc--ccCCCccCeEEcCCCcccCc---hh-hcCCCCCCEEECcCC
Confidence 9999886543 788999999999999987 3343 78899999999999999885 32 778999999999999
Q ss_pred CCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccC
Q 041570 283 NFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALN 360 (394)
Q Consensus 283 ~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~ 360 (394)
++++..| +..+++|+.|++++|.+++. ..+..+++|++|++++|.+++..| +..+++|++|++++ |.++
T Consensus 320 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~--n~~~ 388 (466)
T 1o6v_A 320 NISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLND--QAWT 388 (466)
T ss_dssp CCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG---GTTCTTCCEEECCC--EEEE
T ss_pred cCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch---hhcCCCCCEEeccC--Cccc
Confidence 9998876 77899999999999999965 468899999999999999997766 67899999999999 8887
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=4.5e-30 Score=245.16 Aligned_cols=257 Identities=20% Similarity=0.219 Sum_probs=145.5
Q ss_pred CCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeeccccccCCCCC
Q 041570 97 TPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIEVKGSSKL 176 (394)
Q Consensus 97 ~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L 176 (394)
..+++|++|++++|.+++. + ++.+++|++|++++|.+++ +| ++++++|++|++++|.+++ +++..+++|
T Consensus 82 ~~l~~L~~L~Ls~N~l~~~-~------~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~l~~l~~L 150 (457)
T 3bz5_A 82 SQNTNLTYLACDSNKLTNL-D------VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-IDVSHNTQL 150 (457)
T ss_dssp TTCTTCSEEECCSSCCSCC-C------CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CCCTTCTTC
T ss_pred ccCCCCCEEECcCCCCcee-e------cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-eccccCCcC
Confidence 3444444444444444432 1 3444444444444444443 22 4444445555555544444 344444455
Q ss_pred CEEEcCCCCCCccc-cccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCC
Q 041570 177 QSLDLSHNNLNRII-LSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSG 255 (394)
Q Consensus 177 ~~L~l~~n~l~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~ 255 (394)
++|++++|...+.+ ...+++|++|++++|.+++ ++ ++.+++|++|++++|.+. + + .+..+++|++|++++
T Consensus 151 ~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~-~-~---~l~~l~~L~~L~Ls~ 221 (457)
T 3bz5_A 151 TELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNIT-K-L---DLNQNIQLTFLDCSS 221 (457)
T ss_dssp CEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCS-C-C---CCTTCTTCSEEECCS
T ss_pred CEEECCCCCcccccccccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCC-e-e---ccccCCCCCEEECcC
Confidence 55555544322222 2244555555555555543 22 445555555665555554 1 1 255556666666666
Q ss_pred CCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCC-------CCCEEEcCCCcCChhhhhchhccCCCCeEecC
Q 041570 256 VGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFT-------NLEFLNLRHSSLDINLLKTIASFTSLKNLSMV 328 (394)
Q Consensus 256 n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~-------~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~ 328 (394)
|.+++ +| +..+++|++|++++|++++..+..+..+. +|+.|++++|.+.+.+| ++.+++|+.|+++
T Consensus 222 N~l~~---ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls 294 (457)
T 3bz5_A 222 NKLTE---ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVT 294 (457)
T ss_dssp SCCSC---CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCT
T ss_pred Ccccc---cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECC
Confidence 66665 33 55566666666666666655444333332 34455555555555554 3566788888888
Q ss_pred Ccccceeechh-------hccCCCCCcEEEcCCCCcccCCccccccccccCCCcEEeccccccce
Q 041570 329 SCEVNGVLDGQ-------GFLNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLSYSILNA 386 (394)
Q Consensus 329 ~n~l~~~ip~~-------~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~l~g 386 (394)
+|...+.+|.. .+..+++|++|++++ |.++ + ++ +..+++|+.|++++|+++|
T Consensus 295 ~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~--N~l~-~-l~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 295 HNTQLYLLDCQAAGITELDLSQNPKLVYLYLNN--TELT-E-LD--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp TCTTCCEEECTTCCCSCCCCTTCTTCCEEECTT--CCCS-C-CC--CTTCTTCSEEECCSSCCCB
T ss_pred CCcccceeccCCCcceEechhhcccCCEEECCC--Cccc-c-cc--cccCCcCcEEECCCCCCCC
Confidence 88777776641 245667889999999 8888 5 54 8889999999999999887
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4.6e-30 Score=235.48 Aligned_cols=268 Identities=21% Similarity=0.245 Sum_probs=227.0
Q ss_pred CCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeecccc--ccCCCCCC
Q 041570 100 QQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIE--VKGSSKLQ 177 (394)
Q Consensus 100 ~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~ 177 (394)
++++.++++++.++. +|.. + .+.+++|++++|.+++..+..++++++|++|++++|.+++..| +..+++|+
T Consensus 31 c~l~~l~~~~~~l~~-lp~~----~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (330)
T 1xku_A 31 CHLRVVQCSDLGLEK-VPKD----L--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103 (330)
T ss_dssp EETTEEECTTSCCCS-CCCS----C--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CCCeEEEecCCCccc-cCcc----C--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCC
Confidence 467888888877764 3332 2 3689999999999997777789999999999999999998655 67889999
Q ss_pred EEEcCCCCCCccccccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCC
Q 041570 178 SLDLSHNNLNRIILSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVG 257 (394)
Q Consensus 178 ~L~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~ 257 (394)
+|++++|.++.......++|++|++++|.+.+.. ...+..+++|++|++++|.+.........+..+++|++|++++|.
T Consensus 104 ~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 104 RLYLSKNQLKELPEKMPKTLQELRVHENEITKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp EEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred EEECCCCcCCccChhhcccccEEECCCCcccccC-HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 9999999998655456689999999999998544 478999999999999999986323444578899999999999999
Q ss_pred CCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeec
Q 041570 258 IRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLD 337 (394)
Q Consensus 258 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip 337 (394)
+++ +|..+. ++|++|++++|++++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|.++ .+|
T Consensus 183 l~~---l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp 256 (330)
T 1xku_A 183 ITT---IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP 256 (330)
T ss_dssp CCS---CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCC
T ss_pred ccc---CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCC
Confidence 986 455443 79999999999999988999999999999999999999887888999999999999999999 888
Q ss_pred hhhccCCCCCcEEEcCCCCcccCCccccccccc------cCCCcEEeccccccc
Q 041570 338 GQGFLNFKSLERLDMGGARNALNASFLQIIGES------MASLKHLSLSYSILN 385 (394)
Q Consensus 338 ~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~------~~~L~~L~l~~n~l~ 385 (394)
. .+..+++|++|++++ |.++ +.-+..++. .++|+.+++++|.+.
T Consensus 257 ~-~l~~l~~L~~L~l~~--N~i~-~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 257 G-GLADHKYIQVVYLHN--NNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp T-TTTTCSSCCEEECCS--SCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred h-hhccCCCcCEEECCC--CcCC-ccChhhcCCcccccccccccceEeecCccc
Confidence 8 788999999999999 9998 333344432 478999999999875
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=4.2e-30 Score=241.23 Aligned_cols=267 Identities=19% Similarity=0.204 Sum_probs=220.7
Q ss_pred CCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeecccc--ccCCCC
Q 041570 98 PFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIE--VKGSSK 175 (394)
Q Consensus 98 ~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~ 175 (394)
.+++++.|+++++.++...+. .+..+++|++|++++|.+.+..+..++++++|++|++++|.+++..| +..+++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~----~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAA----LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp GGCCCSEEEEESCEESEECTH----HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccCCceEEEecCCchhhCChh----HhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 468999999999988654433 26789999999999999997777789999999999999999998655 578899
Q ss_pred CCEEEcCCCCCCccccc---cCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCC-----
Q 041570 176 LQSLDLSHNNLNRIILS---SLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSK----- 247 (394)
Q Consensus 176 L~~L~l~~n~l~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~----- 247 (394)
|++|++++|+++...+. .+++|++|++++|.+.+..+ ..++.+++|++|++++|.+. + ++ +..+++
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~-~-~~---~~~l~~L~~L~ 192 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLT-H-VD---LSLIPSLFHAN 192 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTSSCTTCCEEECCSSCCS-B-CC---GGGCTTCSEEE
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccCh-hhccCCCCCCEEECCCCcCC-c-cc---cccccccceee
Confidence 99999999999876543 68999999999999986555 77999999999999999987 2 22 233344
Q ss_pred --------------cCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhh
Q 041570 248 --------------LKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLL 313 (394)
Q Consensus 248 --------------L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 313 (394)
|++|++++|.+.. +|. ...++|++|++++|.+++. ..+..+++|+.|++++|.+++..|
T Consensus 193 l~~n~l~~~~~~~~L~~L~l~~n~l~~---~~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~ 265 (390)
T 3o6n_A 193 VSYNLLSTLAIPIAVEELDASHNSINV---VRG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY 265 (390)
T ss_dssp CCSSCCSEEECCSSCSEEECCSSCCCE---EEC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES
T ss_pred cccccccccCCCCcceEEECCCCeeee---ccc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcCh
Confidence 5555555555543 222 2246899999999998865 468889999999999999998889
Q ss_pred hchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccccccccccCCCcEEecccccccee
Q 041570 314 KTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLSYSILNAN 387 (394)
Q Consensus 314 ~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~l~g~ 387 (394)
..+..+++|++|++++|.++ .+|. .+..+++|++|++++ |.++ .+|..+..+++|+.|++++|+++..
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~-~~~~-~~~~l~~L~~L~L~~--n~l~--~~~~~~~~l~~L~~L~L~~N~i~~~ 333 (390)
T 3o6n_A 266 HPFVKMQRLERLYISNNRLV-ALNL-YGQPIPTLKVLDLSH--NHLL--HVERNQPQFDRLENLYLDHNSIVTL 333 (390)
T ss_dssp GGGTTCSSCCEEECCSSCCC-EEEC-SSSCCTTCCEEECCS--SCCC--CCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred hHccccccCCEEECCCCcCc-ccCc-ccCCCCCCCEEECCC--Ccce--ecCccccccCcCCEEECCCCcccee
Confidence 99999999999999999998 4666 567889999999999 8887 7888888999999999999998764
No 41
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=1.2e-30 Score=267.83 Aligned_cols=279 Identities=20% Similarity=0.241 Sum_probs=239.3
Q ss_pred CCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccc-hHhhhcCCCCCEEEcCCceeecccc--ccCCCC
Q 041570 99 FQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSI-SSSLARLSSLISLSLSHNKLEGSIE--VKGSSK 175 (394)
Q Consensus 99 l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~-p~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~ 175 (394)
.+++++|+|++|.+++..+.. +.++++|++|++++|...+.+ |..|.++++|++|++++|.+.+..| +..+++
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~----~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASS----FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSS----CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred CCCcCEEECCCCcCCccChhH----CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence 368999999999998776654 899999999999999777677 7789999999999999999998766 778899
Q ss_pred CCEEEcCCCCCCccccc-----cCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCC--CCc
Q 041570 176 LQSLDLSHNNLNRIILS-----SLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGL--SKL 248 (394)
Q Consensus 176 L~~L~l~~n~l~~~~~~-----~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l--~~L 248 (394)
|++|++++|.+++..+. .+++|++|++++|.+.+..+...++++++|++|++++|.+. +..+ ..+..+ ++|
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~-~~~~-~~l~~l~~~~L 176 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCE-HELEPLQGKTL 176 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC-CCCS-GGGHHHHHCSS
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC-eeCH-HHcccccCCcc
Confidence 99999999999986543 78999999999999987665467999999999999999987 4443 366666 899
Q ss_pred CEEEcCCCCCCCChhhhhhcCCCCC------CCEEeCcCCCCCccchhhcCC----------------------------
Q 041570 249 KRLDLSGVGIRDGSELLRSMGSFPS------LKTLFLEANNFTATTTQELHN---------------------------- 294 (394)
Q Consensus 249 ~~L~l~~n~~~~~~~~~~~l~~~~~------L~~L~l~~n~~~~~~~~~l~~---------------------------- 294 (394)
++|++++|.+.+. .|..+..+++ |++|++++|.+++..+..+..
T Consensus 177 ~~L~L~~n~l~~~--~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~ 254 (844)
T 3j0a_A 177 SFFSLAANSLYSR--VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254 (844)
T ss_dssp CCCEECCSBSCCC--CCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTT
T ss_pred ceEECCCCccccc--cccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCC
Confidence 9999999999886 6666665554 999999999877655443321
Q ss_pred ----------CCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccc
Q 041570 295 ----------FTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFL 364 (394)
Q Consensus 295 ----------~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l 364 (394)
.++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..|. .+..+++|++|++++ |.++ +..
T Consensus 255 ~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~--N~l~-~~~ 330 (844)
T 3j0a_A 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE-AFYGLDNLQVLNLSY--NLLG-ELY 330 (844)
T ss_dssp GGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT-TTTTCSSCCEEEEES--CCCS-CCC
T ss_pred CChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH-HhcCCCCCCEEECCC--CCCC-ccC
Confidence 26899999999999988888999999999999999999977676 889999999999999 9998 777
Q ss_pred cccccccCCCcEEeccccccceeEe
Q 041570 365 QIIGESMASLKHLSLSYSILNANCT 389 (394)
Q Consensus 365 ~~~~~~~~~L~~L~l~~n~l~g~~~ 389 (394)
|..+..+++|+.|++++|++++..+
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~~~~ 355 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAIIQD 355 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCCCCS
T ss_pred HHHhcCCCCCCEEECCCCCCCccCh
Confidence 8899999999999999999877554
No 42
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=2.3e-31 Score=246.44 Aligned_cols=279 Identities=22% Similarity=0.214 Sum_probs=187.1
Q ss_pred CCCCCccceeEecCCCCcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEE
Q 041570 55 QGDFCQWESVECSNTTGRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLD 134 (394)
Q Consensus 55 ~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~ 134 (394)
....|.|.++ |+ .++++++..+. . -.++|++|++++|.+++..+.. +.++++|++|+
T Consensus 26 ~~~~C~~~~~-c~----------~~~~~l~~iP~-----~---~~~~L~~L~l~~n~i~~~~~~~----~~~l~~L~~L~ 82 (353)
T 2z80_A 26 ASLSCDRNGI-CK----------GSSGSLNSIPS-----G---LTEAVKSLDLSNNRITYISNSD----LQRCVNLQALV 82 (353)
T ss_dssp -CCEECTTSE-EE----------CCSTTCSSCCT-----T---CCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEE
T ss_pred cCCCCCCCeE-ee----------CCCCCcccccc-----c---ccccCcEEECCCCcCcccCHHH----hccCCCCCEEE
Confidence 4567888887 64 24444443332 1 1258999999999998655533 78899999999
Q ss_pred cccccCCccchHhhhcCCCCCEEEcCCceeecccc--ccCCCCCCEEEcCCCCCCcccc----ccCCCCcEEEccCcccC
Q 041570 135 LRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIE--VKGSSKLQSLDLSHNNLNRIIL----SSLTTLSELYLSGMGFE 208 (394)
Q Consensus 135 L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~----~~l~~L~~L~l~~~~~~ 208 (394)
+++|.+++..|..++++++|++|++++|.+++..+ +..+++|++|++++|++++... ..+++|++|++++|...
T Consensus 83 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~ 162 (353)
T 2z80_A 83 LTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 162 (353)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC
T ss_pred CCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccc
Confidence 99999997777889999999999999999987444 5677888888888888876544 25677777777777433
Q ss_pred CccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhh-cCCCCCCCEEeCcCCCCCcc
Q 041570 209 GTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRS-MGSFPSLKTLFLEANNFTAT 287 (394)
Q Consensus 209 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-l~~~~~L~~L~l~~n~~~~~ 287 (394)
+.++...++.+++|++|++++|.+. +..+ ..+..+++|++|++++|.++. +|.. +..+++|++|++++|.+++.
T Consensus 163 ~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~-~~l~~l~~L~~L~l~~n~l~~---~~~~~~~~~~~L~~L~L~~n~l~~~ 237 (353)
T 2z80_A 163 TKIQRKDFAGLTFLEELEIDASDLQ-SYEP-KSLKSIQNVSHLILHMKQHIL---LLEIFVDVTSSVECLELRDTDLDTF 237 (353)
T ss_dssp CEECTTTTTTCCEEEEEEEEETTCC-EECT-TTTTTCSEEEEEEEECSCSTT---HHHHHHHHTTTEEEEEEESCBCTTC
T ss_pred cccCHHHccCCCCCCEEECCCCCcC-ccCH-HHHhccccCCeecCCCCcccc---chhhhhhhcccccEEECCCCccccc
Confidence 3444356777777777777777765 3323 367777777777777777654 3332 33466777777777777665
Q ss_pred chhhcC---CCCCCCEEEcCCCcCCh----hhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccC
Q 041570 288 TTQELH---NFTNLEFLNLRHSSLDI----NLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALN 360 (394)
Q Consensus 288 ~~~~l~---~~~~L~~L~l~~n~l~~----~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~ 360 (394)
.+..+. ....++.++++++.+++ .+|..+..+++|++|++++|.++ .+|...+..+++|++|++++ |.+.
T Consensus 238 ~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~--N~~~ 314 (353)
T 2z80_A 238 HFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHT--NPWD 314 (353)
T ss_dssp CCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS--SCBC
T ss_pred cccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeC--CCcc
Confidence 443332 24556666666666665 34555666666666666666666 55553445666666666666 6665
Q ss_pred Ccccc
Q 041570 361 ASFLQ 365 (394)
Q Consensus 361 ~g~l~ 365 (394)
+..|
T Consensus 315 -~~~~ 318 (353)
T 2z80_A 315 -CSCP 318 (353)
T ss_dssp -CCHH
T ss_pred -CcCC
Confidence 4433
No 43
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1.7e-30 Score=254.85 Aligned_cols=171 Identities=24% Similarity=0.266 Sum_probs=139.2
Q ss_pred EecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCCCC
Q 041570 76 LDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSSLI 155 (394)
Q Consensus 76 l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~ 155 (394)
.+.++++++..+.. . .++|++|++++|.+++..+.. +.++++|++|++++|.+++..|..|+++++|+
T Consensus 10 c~~~~~~l~~ip~~-----~---~~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 77 (549)
T 2z81_A 10 CDGRSRSFTSIPSG-----L---TAAMKSLDLSFNKITYIGHGD----LRACANLQVLILKSSRINTIEGDAFYSLGSLE 77 (549)
T ss_dssp EECTTSCCSSCCSC-----C---CTTCCEEECCSSCCCEECSST----TSSCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred EECCCCcccccccc-----C---CCCccEEECcCCccCccChhh----hhcCCcccEEECCCCCcCccChhhccccccCC
Confidence 57777777654431 1 278999999999998776654 89999999999999999988888999999999
Q ss_pred EEEcCCceeecccc--ccCCCCCCEEEcCCCCCCcc-cc---ccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCC
Q 041570 156 SLSLSHNKLEGSIE--VKGSSKLQSLDLSHNNLNRI-IL---SSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSN 229 (394)
Q Consensus 156 ~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~---~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 229 (394)
+|++++|.+++..+ +..+++|++|++++|.+++. .+ ..+++|++|++++|.+.+.++...++.+++|++|++++
T Consensus 78 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157 (549)
T ss_dssp EEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence 99999999998666 78889999999999999864 22 37899999999999976677767899999999999999
Q ss_pred CCCCCCcccCcCCCC------------------------CCCcCEEEcCCCCCCC
Q 041570 230 NKGINNFVVPQDYRG------------------------LSKLKRLDLSGVGIRD 260 (394)
Q Consensus 230 n~~~~~~~~~~~~~~------------------------l~~L~~L~l~~n~~~~ 260 (394)
|.+. +..+. .+.. +++|++|++++|.+++
T Consensus 158 n~l~-~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 158 LSLR-NYQSQ-SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp TTCC-EECTT-TTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred Cccc-ccChh-hhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence 9987 44443 4544 4566666666666554
No 44
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=1.2e-29 Score=242.35 Aligned_cols=257 Identities=22% Similarity=0.205 Sum_probs=118.1
Q ss_pred CCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeeccccccCCCCC
Q 041570 97 TPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIEVKGSSKL 176 (394)
Q Consensus 97 ~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L 176 (394)
..+++|++|++++|.+++. + ++.+++|++|++++|.+++. + ++++++|++|++++|.+++ +++..+++|
T Consensus 61 ~~l~~L~~L~Ls~n~l~~~-~------~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~~~~l~~L 129 (457)
T 3bz5_A 61 EKLTGLTKLICTSNNITTL-D------LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LDVSQNPLL 129 (457)
T ss_dssp GGCTTCSEEECCSSCCSCC-C------CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CCCTTCTTC
T ss_pred cccCCCCEEEccCCcCCeE-c------cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ecCCCCCcC
Confidence 4445555555555554442 1 34445555555555555432 2 4445555555555555544 344444555
Q ss_pred CEEEcCCCCCCccccccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCC
Q 041570 177 QSLDLSHNNLNRIILSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGV 256 (394)
Q Consensus 177 ~~L~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n 256 (394)
++|++++|++++.....+++|++|++++|...+.++ ++.+++|++|++++|++. + ++ +..+++|++|++++|
T Consensus 130 ~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~-~-l~---l~~l~~L~~L~l~~N 201 (457)
T 3bz5_A 130 TYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKIT-E-LD---VSQNKLLNRLNCDTN 201 (457)
T ss_dssp CEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCC-C-CC---CTTCTTCCEEECCSS
T ss_pred CEEECCCCccceeccccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccc-e-ec---cccCCCCCEEECcCC
Confidence 555555555554433344555555555554333332 344455555555555544 1 21 344445555555555
Q ss_pred CCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccC-------CCCeEecCC
Q 041570 257 GIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFT-------SLKNLSMVS 329 (394)
Q Consensus 257 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~-------~L~~L~l~~ 329 (394)
.+++. .+..+++|++|++++|++++ +| +..+++|+.|++++|.+++..+..+.+++ +|+.|++++
T Consensus 202 ~l~~~-----~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~ 273 (457)
T 3bz5_A 202 NITKL-----DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTH 273 (457)
T ss_dssp CCSCC-----CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTT
T ss_pred cCCee-----ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCC
Confidence 55442 14444555555555555544 22 44445555555555555443322222222 334444444
Q ss_pred cccceeechhhccCCCCCcEEEcCCCCcccCCccccc--------cccccCCCcEEeccccccce
Q 041570 330 CEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQI--------IGESMASLKHLSLSYSILNA 386 (394)
Q Consensus 330 n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~--------~~~~~~~L~~L~l~~n~l~g 386 (394)
|.+.|.+|. ..+++|+.|++++ |... |.+|. .+..+++|+.|++++|+++|
T Consensus 274 n~~~~~~~~---~~l~~L~~L~Ls~--n~~l-~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 274 NTQLIYFQA---EGCRKIKELDVTH--NTQL-YLLDCQAAGITELDLSQNPKLVYLYLNNTELTE 332 (457)
T ss_dssp CTTCCEEEC---TTCTTCCCCCCTT--CTTC-CEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC
T ss_pred CccCCcccc---cccccCCEEECCC--Cccc-ceeccCCCcceEechhhcccCCEEECCCCcccc
Confidence 444444432 2344555555555 4333 33332 12334455555555555544
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=5.3e-30 Score=235.24 Aligned_cols=267 Identities=21% Similarity=0.248 Sum_probs=227.0
Q ss_pred CCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeecccc--ccCCCCCC
Q 041570 100 QQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIE--VKGSSKLQ 177 (394)
Q Consensus 100 ~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~ 177 (394)
++++.++++++.++ .+|.. + .++|++|++++|.+.+..|..+.++++|++|++++|.+++..| +..+++|+
T Consensus 33 c~l~~l~~~~~~l~-~ip~~----~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 105 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-AVPKE----I--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105 (332)
T ss_dssp EETTEEECCSSCCS-SCCSC----C--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCC
T ss_pred ccCCEEECCCCCcc-ccCCC----C--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCC
Confidence 46888999988886 34432 2 3789999999999997777789999999999999999998655 77889999
Q ss_pred EEEcCCCCCCccccccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCC
Q 041570 178 SLDLSHNNLNRIILSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVG 257 (394)
Q Consensus 178 ~L~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~ 257 (394)
+|++++|.++.......++|++|++++|.+.+ ++...+..+++|++|++++|.+......+..+..+ +|++|++++|.
T Consensus 106 ~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~ 183 (332)
T 2ft3_A 106 KLYISKNHLVEIPPNLPSSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK 183 (332)
T ss_dssp EEECCSSCCCSCCSSCCTTCCEEECCSSCCCC-CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred EEECCCCcCCccCccccccCCEEECCCCccCc-cCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence 99999999986555555899999999999985 44477999999999999999986323444577777 99999999999
Q ss_pred CCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeec
Q 041570 258 IRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLD 337 (394)
Q Consensus 258 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip 337 (394)
+++ +|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.++ .+|
T Consensus 184 l~~---l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp 257 (332)
T 2ft3_A 184 LTG---IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVP 257 (332)
T ss_dssp CSS---CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCC
T ss_pred CCc---cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecC
Confidence 987 555543 78999999999999988889999999999999999999888888999999999999999999 888
Q ss_pred hhhccCCCCCcEEEcCCCCcccCCccccccccc------cCCCcEEeccccccc
Q 041570 338 GQGFLNFKSLERLDMGGARNALNASFLQIIGES------MASLKHLSLSYSILN 385 (394)
Q Consensus 338 ~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~------~~~L~~L~l~~n~l~ 385 (394)
. .+..+++|++|++++ |.++ +.-+..+.. .++|+.|++++|.+.
T Consensus 258 ~-~l~~l~~L~~L~l~~--N~l~-~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 258 A-GLPDLKLLQVVYLHT--NNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp T-TGGGCTTCCEEECCS--SCCC-BCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred h-hhhcCccCCEEECCC--CCCC-ccChhHccccccccccccccceEeecCccc
Confidence 8 688999999999999 9998 433345543 467999999999876
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=5.1e-29 Score=226.09 Aligned_cols=275 Identities=20% Similarity=0.196 Sum_probs=169.3
Q ss_pred EEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCc--cchHhhhcCC
Q 041570 75 GLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKN--SISSSLARLS 152 (394)
Q Consensus 75 ~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~--~~p~~l~~l~ 152 (394)
.++.++.+++..+.. -.++|++|++++|.++...+. .+.++++|++|++++|.++. ..+..+..++
T Consensus 11 ~l~c~~~~l~~ip~~--------~~~~l~~L~L~~n~l~~i~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 78 (306)
T 2z66_A 11 EIRCNSKGLTSVPTG--------IPSSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78 (306)
T ss_dssp EEECCSSCCSSCCSC--------CCTTCCEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCEEEEEEHHHHSCS
T ss_pred EEEcCCCCcccCCCC--------CCCCCCEEECCCCccCccCHh----HhhccccCCEEECCCCccCcccCccccccccc
Confidence 577777776544431 136789999999988754433 26788899999999988873 3366777788
Q ss_pred CCCEEEcCCceeecccc-ccCCCCCCEEEcCCCCCCccccccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCC
Q 041570 153 SLISLSLSHNKLEGSIE-VKGSSKLQSLDLSHNNLNRIILSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNK 231 (394)
Q Consensus 153 ~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 231 (394)
+|++|++++|.+....+ +..+++|++|++++|++++..+ ...+..+++|++|++++|.
T Consensus 79 ~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~---------------------~~~~~~l~~L~~L~l~~n~ 137 (306)
T 2z66_A 79 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE---------------------FSVFLSLRNLIYLDISHTH 137 (306)
T ss_dssp CCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTT---------------------TTTTTTCTTCCEEECTTSC
T ss_pred ccCEEECCCCccccChhhcCCCCCCCEEECCCCccccccc---------------------chhhhhccCCCEEECCCCc
Confidence 88888888888876322 4555666666666665544321 1345556666666666665
Q ss_pred CCCCcccCcCCCCCCCcCEEEcCCCCCCC-ChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCCh
Q 041570 232 GINNFVVPQDYRGLSKLKRLDLSGVGIRD-GSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDI 310 (394)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~ 310 (394)
+. + .++..+..+++|++|++++|.+++ . +|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++
T Consensus 138 l~-~-~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 138 TR-V-AFNGIFNGLSSLEVLKMAGNSFQENF--LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp CE-E-CSTTTTTTCTTCCEEECTTCEEGGGE--ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB
T ss_pred CC-c-cchhhcccCcCCCEEECCCCcccccc--chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc
Confidence 54 2 222355566666666666666554 2 45555666666666666666666656666666666666666666665
Q ss_pred hhhhchhccCCCCeEecCCcccceeechhhccCCC-CCcEEEcCCCCcccCCcccc--ccccccCCCcEEecccccccee
Q 041570 311 NLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFK-SLERLDMGGARNALNASFLQ--IIGESMASLKHLSLSYSILNAN 387 (394)
Q Consensus 311 ~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~-~L~~L~l~~~~n~l~~g~l~--~~~~~~~~L~~L~l~~n~l~g~ 387 (394)
..+..+..+++|++|++++|.+++..|. .+..++ +|++|++++ |.++ +..+ .....+...+.+.+..+.+.|.
T Consensus 214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~~~~L~~L~L~~--N~~~-~~c~~~~~~~~l~~~~~~~~~~~~~~C~ 289 (306)
T 2z66_A 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQ-ELQHFPSSLAFLNLTQ--NDFA-CTCEHQSFLQWIKDQRQLLVEVERMECA 289 (306)
T ss_dssp CCSGGGTTCTTCCEEECTTSCCCBCSSS-SCCCCCTTCCEEECTT--CCEE-CSGGGHHHHHHHHHTGGGBSCGGGCBEE
T ss_pred cChhhccCcccCCEeECCCCCCcccCHH-HHHhhhccCCEEEccC--CCee-cccChHHHHHHHHhhhhhhccccccccC
Confidence 5555566666666666666666655555 455553 666666666 6665 3321 1222233444455555666666
Q ss_pred Eee
Q 041570 388 CTI 390 (394)
Q Consensus 388 ~~~ 390 (394)
.|.
T Consensus 290 ~p~ 292 (306)
T 2z66_A 290 TPS 292 (306)
T ss_dssp ESG
T ss_pred Cch
Confidence 554
No 47
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=6e-29 Score=225.61 Aligned_cols=252 Identities=23% Similarity=0.218 Sum_probs=196.3
Q ss_pred CCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeeccc--c--ccCCCCCC
Q 041570 102 LESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSI--E--VKGSSKLQ 177 (394)
Q Consensus 102 L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~--~--~~~~~~L~ 177 (394)
-+.++++++.++.. |.. -.++|++|++++|.++...+..+.++++|++|++++|.++... + +..+
T Consensus 9 ~~~l~c~~~~l~~i-p~~------~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~---- 77 (306)
T 2z66_A 9 GTEIRCNSKGLTSV-PTG------IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT---- 77 (306)
T ss_dssp TTEEECCSSCCSSC-CSC------CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSC----
T ss_pred CCEEEcCCCCcccC-CCC------CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccc----
Confidence 35677777766543 321 1257778888877777333334677777777777777765321 1 2334
Q ss_pred EEEcCCCCCCccccccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCC
Q 041570 178 SLDLSHNNLNRIILSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVG 257 (394)
Q Consensus 178 ~L~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~ 257 (394)
++|++|++++|.+. .++ ..+..+++|++|++++|.+. +..+...+..+++|++|++++|.
T Consensus 78 -----------------~~L~~L~Ls~n~i~-~l~-~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~ 137 (306)
T 2z66_A 78 -----------------TSLKYLDLSFNGVI-TMS-SNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTH 137 (306)
T ss_dssp -----------------SCCCEEECCSCSEE-EEE-EEEETCTTCCEEECTTSEEE-SSTTTTTTTTCTTCCEEECTTSC
T ss_pred -----------------cccCEEECCCCccc-cCh-hhcCCCCCCCEEECCCCccc-ccccchhhhhccCCCEEECCCCc
Confidence 44555555555544 333 45778899999999999887 33232478899999999999999
Q ss_pred CCCChhhhhhcCCCCCCCEEeCcCCCCCc-cchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceee
Q 041570 258 IRDGSELLRSMGSFPSLKTLFLEANNFTA-TTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVL 336 (394)
Q Consensus 258 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~i 336 (394)
+.+. .+..+..+++|++|++++|.+++ ..|..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++..
T Consensus 138 l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 215 (306)
T 2z66_A 138 TRVA--FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215 (306)
T ss_dssp CEEC--STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred CCcc--chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC
Confidence 9876 67788899999999999999987 67888999999999999999999888899999999999999999999554
Q ss_pred chhhccCCCCCcEEEcCCCCcccCCccccccccccC-CCcEEeccccccceeEee
Q 041570 337 DGQGFLNFKSLERLDMGGARNALNASFLQIIGESMA-SLKHLSLSYSILNANCTI 390 (394)
Q Consensus 337 p~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~-~L~~L~l~~n~l~g~~~~ 390 (394)
+. .+..+++|++|++++ |.++ +..|..+..++ +|++|++++|+++|.|+.
T Consensus 216 ~~-~~~~l~~L~~L~L~~--N~l~-~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 216 TF-PYKCLNSLQVLDYSL--NHIM-TSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp SG-GGTTCTTCCEEECTT--SCCC-BCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred hh-hccCcccCCEeECCC--CCCc-ccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 44 788999999999999 9999 88888888885 999999999999998753
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=5.1e-28 Score=230.81 Aligned_cols=253 Identities=23% Similarity=0.207 Sum_probs=160.0
Q ss_pred CCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeeccccccCCCCCCEE
Q 041570 100 QQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIEVKGSSKLQSL 179 (394)
Q Consensus 100 ~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L 179 (394)
++|++|++++|.+++ +|. ++++++|++|++++|.+++ +|.. .++|++|++++|.+++...+..+++|++|
T Consensus 131 ~~L~~L~L~~n~l~~-lp~-----~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l~~~~~l~~L~~L 200 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LPE-----LQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEELPELQNLPFLTAI 200 (454)
T ss_dssp TTCCEEECCSSCCSS-CCC-----CTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSCCCCTTCTTCCEE
T ss_pred CCCCEEECcCCCCCC-Ccc-----cCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcCccccCCCCCCEE
Confidence 577777777777765 442 6777788888888887774 4533 24778888888877773336667888888
Q ss_pred EcCCCCCCccccccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCC
Q 041570 180 DLSHNNLNRIILSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIR 259 (394)
Q Consensus 180 ~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 259 (394)
++++|++++ +|...++|++|++++|.+. .+| .++.+++|++|++++|++. .++. .+++|++|++++|.++
T Consensus 201 ~l~~N~l~~-l~~~~~~L~~L~l~~n~l~-~lp--~~~~l~~L~~L~l~~N~l~--~l~~----~~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 201 YADNNSLKK-LPDLPLSLESIVAGNNILE-ELP--ELQNLPFLTTIYADNNLLK--TLPD----LPPSLEALNVRDNYLT 270 (454)
T ss_dssp ECCSSCCSS-CCCCCTTCCEEECCSSCCS-SCC--CCTTCTTCCEEECCSSCCS--SCCS----CCTTCCEEECCSSCCS
T ss_pred ECCCCcCCc-CCCCcCcccEEECcCCcCC-ccc--ccCCCCCCCEEECCCCcCC--cccc----cccccCEEECCCCccc
Confidence 888888776 3444567888888888777 565 2778888888888888776 2332 2356777777777666
Q ss_pred CChhhhhhcCCCCCCCEEeCcCCCCCcc--chhhc-------------CCC-CCCCEEEcCCCcCChhhhhchhccCCCC
Q 041570 260 DGSELLRSMGSFPSLKTLFLEANNFTAT--TTQEL-------------HNF-TNLEFLNLRHSSLDINLLKTIASFTSLK 323 (394)
Q Consensus 260 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~--~~~~l-------------~~~-~~L~~L~l~~n~l~~~~~~~l~~~~~L~ 323 (394)
+ +|.. +++|++|++++|++++. .|..+ ..+ ++|+.|++++|.+++ +|.. +++|+
T Consensus 271 ~---l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~ 340 (454)
T 1jl5_A 271 D---LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLE 340 (454)
T ss_dssp C---CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCC
T ss_pred c---cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCC
Confidence 5 2322 24566666666665541 11111 122 478888888888775 5543 57888
Q ss_pred eEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCc--ccccccccc-------------CCCcEEeccccccce--
Q 041570 324 NLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNAS--FLQIIGESM-------------ASLKHLSLSYSILNA-- 386 (394)
Q Consensus 324 ~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g--~l~~~~~~~-------------~~L~~L~l~~n~l~g-- 386 (394)
+|++++|.++ .+|. .+++|++|++++ |.++ + .+|..+..+ ++|+.|++++|+++|
T Consensus 341 ~L~L~~N~l~-~lp~----~l~~L~~L~L~~--N~l~-~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~ 412 (454)
T 1jl5_A 341 RLIASFNHLA-EVPE----LPQNLKQLHVEY--NPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFP 412 (454)
T ss_dssp EEECCSSCCS-CCCC----CCTTCCEEECCS--SCCS-SCCCCCTTCCEEECCC--------------------------
T ss_pred EEECCCCccc-cccc----hhhhccEEECCC--CCCC-cCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccc
Confidence 9999988888 5666 367899999999 8888 7 688888777 889999999999988
Q ss_pred eEee
Q 041570 387 NCTI 390 (394)
Q Consensus 387 ~~~~ 390 (394)
.+|.
T Consensus 413 ~iP~ 416 (454)
T 1jl5_A 413 DIPE 416 (454)
T ss_dssp ----
T ss_pred cchh
Confidence 6663
No 49
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=4.4e-30 Score=234.14 Aligned_cols=241 Identities=20% Similarity=0.235 Sum_probs=137.2
Q ss_pred CCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeeccccccCCCC
Q 041570 96 FTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIEVKGSSK 175 (394)
Q Consensus 96 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 175 (394)
+..+++|++|++++|.+++..+.. +..+++|++|++++|.+++..+ +..+++|++|++++|.+++.. ..++
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~---~~~~ 100 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAAD----LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL---VGPS 100 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHH----HTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE---ECTT
T ss_pred hccCCCCCEEECcCCccCcCCHHH----hhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc---CCCC
Confidence 344566777777777666554432 5666777777777776664443 666677777777777666522 2256
Q ss_pred CCEEEcCCCCCCccccccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCC
Q 041570 176 LQSLDLSHNNLNRIILSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSG 255 (394)
Q Consensus 176 L~~L~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~ 255 (394)
|++|++++|.+++..+..+++|++|++++|.+++..+ ..++.+++|++|++++|.+. +..+......+++|++|++++
T Consensus 101 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~l~~L~~L~L~~ 178 (317)
T 3o53_A 101 IETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTLEHLNLQY 178 (317)
T ss_dssp CCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGG-BCTGGGSSEEEEECTTSCCC-EEEGGGGGGGTTTCCEEECTT
T ss_pred cCEEECCCCccCCcCccccCCCCEEECCCCCCCCccc-hhhhccCCCCEEECCCCCCC-cccHHHHhhccCcCCEEECCC
Confidence 6666666666666655556666666666666654333 45555666666666666655 222221223455666666666
Q ss_pred CCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccc-e
Q 041570 256 VGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVN-G 334 (394)
Q Consensus 256 n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~-~ 334 (394)
|.+++. + ....+++|++|++++|++++..+ .+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+. +
T Consensus 179 N~l~~~---~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 179 NFIYDV---K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG 252 (317)
T ss_dssp SCCCEE---E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHH
T ss_pred CcCccc---c-cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCc
Confidence 665542 2 22235556666666666554333 2555556666666666655 34555555556666666666555 3
Q ss_pred eechhhccCCCCCcEEEcCC
Q 041570 335 VLDGQGFLNFKSLERLDMGG 354 (394)
Q Consensus 335 ~ip~~~~~~~~~L~~L~l~~ 354 (394)
.+|. .+..+++|+.+++++
T Consensus 253 ~~~~-~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 253 TLRD-FFSKNQRVQTVAKQT 271 (317)
T ss_dssp HHHH-HHHTCHHHHHHHHHH
T ss_pred CHHH-HHhccccceEEECCC
Confidence 3444 455555555555553
No 50
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=8.9e-28 Score=239.30 Aligned_cols=282 Identities=23% Similarity=0.215 Sum_probs=209.2
Q ss_pred CCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeecccc--ccCCCCCC
Q 041570 100 QQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIE--VKGSSKLQ 177 (394)
Q Consensus 100 ~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~ 177 (394)
+.+++|+|++|.+++..+.. |.++++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+ +..+++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~----f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 127 (635)
T ss_dssp TTCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCC
T ss_pred cCCCEEEeeCCCCCCCCHHH----HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCC
Confidence 47999999999998766644 8999999999999999997767789999999999999999988554 67889999
Q ss_pred EEEcCCCCCCccccc---cCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCC------------
Q 041570 178 SLDLSHNNLNRIILS---SLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDY------------ 242 (394)
Q Consensus 178 ~L~l~~n~l~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~------------ 242 (394)
+|++++|++++..+. .+++|++|++++|.+.+...+..++.+++|++|++++|++. +..+. .+
T Consensus 128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~-~l~~L~~l~~~~~~ 205 (635)
T 4g8a_A 128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCT-DLRVLHQMPLLNLS 205 (635)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC-EECGG-GGHHHHTCTTCCCE
T ss_pred EEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc-ccccc-cccchhhhhhhhhh
Confidence 999999999887653 78999999999999976433378899999999999998764 11000 00
Q ss_pred --------------------------------------------------------------------------------
Q 041570 243 -------------------------------------------------------------------------------- 242 (394)
Q Consensus 243 -------------------------------------------------------------------------------- 242 (394)
T Consensus 206 ~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 285 (635)
T 4g8a_A 206 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 285 (635)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEE
T ss_pred hhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhh
Confidence
Q ss_pred ---------------------------------------C----------------------------------------
Q 041570 243 ---------------------------------------R---------------------------------------- 243 (394)
Q Consensus 243 ---------------------------------------~---------------------------------------- 243 (394)
.
T Consensus 286 l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 365 (635)
T 4g8a_A 286 FRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 365 (635)
T ss_dssp EEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBC
T ss_pred hhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCc
Confidence 0
Q ss_pred ---CCCCcCEEEcCCCCCCCChhhh------------------------------------------------hhcCCCC
Q 041570 244 ---GLSKLKRLDLSGVGIRDGSELL------------------------------------------------RSMGSFP 272 (394)
Q Consensus 244 ---~l~~L~~L~l~~n~~~~~~~~~------------------------------------------------~~l~~~~ 272 (394)
.+++|+++++++|.+......+ ..+..++
T Consensus 366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~ 445 (635)
T 4g8a_A 366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 445 (635)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT
T ss_pred ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccc
Confidence 0112233333333221100000 0112223
Q ss_pred CCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCC-hhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEE
Q 041570 273 SLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLD-INLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLD 351 (394)
Q Consensus 273 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~-~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~ 351 (394)
+++.++++.|.+.+..+..+..++.++.|++++|.+. +.+|..+..+++|++|++++|.+++..|. .+..+++|++|+
T Consensus 446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~-~f~~l~~L~~L~ 524 (635)
T 4g8a_A 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT-AFNSLSSLQVLN 524 (635)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEE
T ss_pred ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChH-HHcCCCCCCEEE
Confidence 3344444444444444555566678888888888754 45677888999999999999999976676 889999999999
Q ss_pred cCCCCcccCCccccccccccCCCcEEeccccccceeEeec
Q 041570 352 MGGARNALNASFLQIIGESMASLKHLSLSYSILNANCTIL 391 (394)
Q Consensus 352 l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~l~g~~~~~ 391 (394)
|++ |.++ +..|..+..+++|++|+|++|++++..|-.
T Consensus 525 Ls~--N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 561 (635)
T 4g8a_A 525 MSH--NNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561 (635)
T ss_dssp CTT--SCCC-BCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred CCC--CcCC-CCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence 999 9998 666678999999999999999999987643
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.2e-27 Score=227.93 Aligned_cols=224 Identities=23% Similarity=0.236 Sum_probs=173.3
Q ss_pred CCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeecccc--ccCCCCCC
Q 041570 100 QQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIE--VKGSSKLQ 177 (394)
Q Consensus 100 ~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~ 177 (394)
++++.|+|++|.+++..+.. +.++++|++|+|++|.+++..+..|.++++|++|++++|.+++..+ +..+++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 139 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNS----FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLK 139 (440)
T ss_dssp TTCSEEECCSCCCCEECTTT----TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCC
T ss_pred CCCcEEEccCCcCCeeCHHH----hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCc
Confidence 67899999999988766544 7889999999999999987777888999999999999999887444 56778888
Q ss_pred EEEcCCCCCCccccc---cCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcC
Q 041570 178 SLDLSHNNLNRIILS---SLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLS 254 (394)
Q Consensus 178 ~L~l~~n~l~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~ 254 (394)
+|++++|.+....+. .+++|++|++++|...+.++...+..+++|++|++++|.+. .++ .+..+++|++|+++
T Consensus 140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~--~~~--~~~~l~~L~~L~Ls 215 (440)
T 3zyj_A 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR--EIP--NLTPLIKLDELDLS 215 (440)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS--SCC--CCTTCSSCCEEECT
T ss_pred eeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc--ccc--ccCCCcccCEEECC
Confidence 888888888766543 66778888887765555666556777788888888887775 444 46777778888888
Q ss_pred CCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccc
Q 041570 255 GVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVN 333 (394)
Q Consensus 255 ~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 333 (394)
+|.+++. .|..+..+++|++|++++|++++..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 216 ~N~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 216 GNHLSAI--RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TSCCCEE--CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCccCcc--ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 8877765 5667777778888888888877777777777788888888888877666666777778888888777654
No 52
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=7.1e-30 Score=244.98 Aligned_cols=312 Identities=22% Similarity=0.191 Sum_probs=211.5
Q ss_pred CcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhc
Q 041570 71 GRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLAR 150 (394)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~ 150 (394)
.+++.++++++.+.+.+...+........++|++|++++|.++..........+..+++|++|++++|.+++..+..+..
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 135 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE 135 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH
Confidence 45778888887765433222211111111268888888887765432233445778888888888888876554544432
Q ss_pred -----CCCCCEEEcCCceeeccc----c--ccCCCCCCEEEcCCCCCCccccc--------cCCCCcEEEccCcccCCc-
Q 041570 151 -----LSSLISLSLSHNKLEGSI----E--VKGSSKLQSLDLSHNNLNRIILS--------SLTTLSELYLSGMGFEGT- 210 (394)
Q Consensus 151 -----l~~L~~L~l~~n~l~~~~----~--~~~~~~L~~L~l~~n~l~~~~~~--------~l~~L~~L~l~~~~~~~~- 210 (394)
.++|++|++++|.+++.. + +..+++|++|++++|.+++..+. ..++|++|++++|.+++.
T Consensus 136 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 215 (461)
T 1z7x_W 136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN 215 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH
Confidence 457888888888877632 2 44567888888888887665332 355888888888887753
Q ss_pred ---cChhhhcCCCCCCEEECCCCCCCCCc---ccCcCCCCCCCcCEEEcCCCCCCCC--hhhhhhcCCCCCCCEEeCcCC
Q 041570 211 ---FDVQEFDSLSNLEELYLSNNKGINNF---VVPQDYRGLSKLKRLDLSGVGIRDG--SELLRSMGSFPSLKTLFLEAN 282 (394)
Q Consensus 211 ---~~~~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~l~~~~~L~~L~l~~n 282 (394)
++ ..+..+++|++|++++|.+.... +....+..+++|++|++++|.+++. ..++..+..+++|++|++++|
T Consensus 216 ~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 216 CRDLC-GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp HHHHH-HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred HHHHH-HHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 33 55677888888888888765111 1122334577888888888887642 124566666788888888888
Q ss_pred CCCccchhhcCC-----CCCCCEEEcCCCcCChh----hhhchhccCCCCeEecCCcccceeechhhcc-----CCCCCc
Q 041570 283 NFTATTTQELHN-----FTNLEFLNLRHSSLDIN----LLKTIASFTSLKNLSMVSCEVNGVLDGQGFL-----NFKSLE 348 (394)
Q Consensus 283 ~~~~~~~~~l~~-----~~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~-----~~~~L~ 348 (394)
.+++..+..+.. .++|+.|++++|.+++. ++..+..+++|++|++++|.+++..+. .+. ..++|+
T Consensus 295 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~-~l~~~l~~~~~~L~ 373 (461)
T 1z7x_W 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR-ELCQGLGQPGSVLR 373 (461)
T ss_dssp CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH-HHHHHHTSTTCCCC
T ss_pred CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH-HHHHHHcCCCCceE
Confidence 887654444432 26888888888888764 566677788888888888888755443 222 156888
Q ss_pred EEEcCCCCcccCCc----cccccccccCCCcEEecccccccee
Q 041570 349 RLDMGGARNALNAS----FLQIIGESMASLKHLSLSYSILNAN 387 (394)
Q Consensus 349 ~L~l~~~~n~l~~g----~l~~~~~~~~~L~~L~l~~n~l~g~ 387 (394)
+|++++ |.++ + .+|..+..+++|++|++++|++++.
T Consensus 374 ~L~L~~--n~i~-~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 374 VLWLAD--CDVS-DSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp EEECTT--SCCC-HHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred EEECCC--CCCC-hhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 899988 7777 5 6777788888899999988888764
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.4e-28 Score=225.04 Aligned_cols=136 Identities=24% Similarity=0.282 Sum_probs=125.6
Q ss_pred CCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCC
Q 041570 242 YRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTS 321 (394)
Q Consensus 242 ~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 321 (394)
+..+++|++|++++|.++. +|..+..+++|++|++++|.+++. |..+..+++|+.|++++|.+.+.+|..++.+++
T Consensus 179 ~~~l~~L~~L~L~~n~l~~---lp~~l~~l~~L~~L~L~~N~l~~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 254 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIRS---LPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254 (328)
T ss_dssp EEESTTCCEEEEEEECCCC---CCGGGGGCTTCCEEEEESSCCCCC-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCC
T ss_pred hccCCCCCEEECcCCCcCc---chHhhcCCCCCCEEEccCCCCCcC-chhhccCCCCCEEECcCCcchhhhHHHhcCCCC
Confidence 5568999999999999984 788899999999999999999964 556899999999999999999999999999999
Q ss_pred CCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccccccccccCCCcEEeccccccc
Q 041570 322 LKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLSYSILN 385 (394)
Q Consensus 322 L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~l~ 385 (394)
|++|++++|.+.+.+|. .+..+++|++|++++ |.+. +.+|..+..+++|+.+++..+.+.
T Consensus 255 L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~L~~--n~~~-~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 255 LKRLILKDCSNLLTLPL-DIHRLTQLEKLDLRG--CVNL-SRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCEEECTTCTTCCBCCT-TGGGCTTCCEEECTT--CTTC-CCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCEEECCCCCchhhcch-hhhcCCCCCEEeCCC--CCch-hhccHHHhhccCceEEeCCHHHHH
Confidence 99999999999999998 789999999999999 8888 899999999999999999987654
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=1.4e-29 Score=230.78 Aligned_cols=267 Identities=19% Similarity=0.214 Sum_probs=221.6
Q ss_pred CCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeeccccccCCCCCCEEEc
Q 041570 102 LESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIEVKGSSKLQSLDL 181 (394)
Q Consensus 102 L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l 181 (394)
++..+++.+.+...+. ..+..+++|++|++++|.+++..|..+.++++|++|++++|.+++..++..+++|++|++
T Consensus 12 l~i~~ls~~~l~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L 87 (317)
T 3o53_A 12 YKIEKVTDSSLKQALA----SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDL 87 (317)
T ss_dssp EEEESCCTTTHHHHHH----HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEEC
T ss_pred eeEeeccccchhhhHH----HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEEC
Confidence 4445555555532222 335677899999999999998888899999999999999999998788889999999999
Q ss_pred CCCCCCccccccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCC
Q 041570 182 SHNNLNRIILSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDG 261 (394)
Q Consensus 182 ~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 261 (394)
++|.+++.. ..++|++|++++|.+++..+ ..+++|++|++++|++. .+++..+..+++|++|++++|.+++.
T Consensus 88 s~n~l~~l~--~~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQELL--VGPSIETLHAANNNISRVSC----SRGQGKKNIYLANNKIT--MLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEEEEE--ECTTCCEEECCSSCCSEEEE----CCCSSCEEEECCSSCCC--SGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cCCcccccc--CCCCcCEEECCCCccCCcCc----cccCCCCEEECCCCCCC--CccchhhhccCCCCEEECCCCCCCcc
Confidence 999998765 34899999999999985443 34788999999999997 34445788999999999999999876
Q ss_pred hhhhhhc-CCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhh
Q 041570 262 SELLRSM-GSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQG 340 (394)
Q Consensus 262 ~~~~~~l-~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~ 340 (394)
.+..+ ..+++|++|++++|.+++..+ ...+++|+.|++++|.+++ +|..+..+++|++|++++|.++ .+|. .
T Consensus 160 --~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~-~ 232 (317)
T 3o53_A 160 --NFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEK-A 232 (317)
T ss_dssp --EGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECT-T
T ss_pred --cHHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhh-H
Confidence 45555 468999999999999987633 3458999999999999995 5556899999999999999999 6888 6
Q ss_pred ccCCCCCcEEEcCCCCcccCCccccccccccCCCcEEecccc-ccceeEe
Q 041570 341 FLNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLSYS-ILNANCT 389 (394)
Q Consensus 341 ~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n-~l~g~~~ 389 (394)
+..+++|+.|++++ |.+..+.+|..+..+++|+.++++++ .++|..|
T Consensus 233 ~~~l~~L~~L~l~~--N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 233 LRFSQNLEHFDLRG--NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp CCCCTTCCEEECTT--CCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred hhcCCCCCEEEccC--CCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 88999999999999 98886778888999999999999854 5666543
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.6e-27 Score=228.01 Aligned_cols=244 Identities=23% Similarity=0.327 Sum_probs=169.7
Q ss_pred CCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeecccc--ccCCCCCCE
Q 041570 101 QLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIE--VKGSSKLQS 178 (394)
Q Consensus 101 ~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~ 178 (394)
..+.++.++..++. +|.. + .+++++|+|++|.+++..+..|.++++|++|++++|.+++..+ +..+++|++
T Consensus 55 ~~~~v~c~~~~l~~-iP~~----~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 127 (452)
T 3zyi_A 55 QFSKVVCTRRGLSE-VPQG----I--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNT 127 (452)
T ss_dssp SSCEEECCSSCCSS-CCSC----C--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCcEEEECCCCcCc-cCCC----C--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCE
Confidence 45678888887764 4432 2 3689999999999998878889999999999999999987554 667788888
Q ss_pred EEcCCCCCCccccc---cCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCC
Q 041570 179 LDLSHNNLNRIILS---SLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSG 255 (394)
Q Consensus 179 L~l~~n~l~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~ 255 (394)
|++++|++++..+. .+++|++|++++|.+. .++...+..+++|++|++++|... +.++...+..+++|++|++++
T Consensus 128 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l-~~i~~~~~~~l~~L~~L~L~~ 205 (452)
T 3zyi_A 128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKL-EYISEGAFEGLFNLKYLNLGM 205 (452)
T ss_dssp EECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTC-CEECTTTTTTCTTCCEEECTT
T ss_pred EECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCc-cccChhhccCCCCCCEEECCC
Confidence 88888888765543 5667777777777766 344356677777777777765444 455555666777777777777
Q ss_pred CCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCccccee
Q 041570 256 VGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGV 335 (394)
Q Consensus 256 n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 335 (394)
|.+++. | .+..+++|++|++++|++++..|..|..+++|+.|++++|.+++..+..+..+++|++|++++|.++ .
T Consensus 206 n~l~~~---~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ 280 (452)
T 3zyi_A 206 CNIKDM---P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-S 280 (452)
T ss_dssp SCCSSC---C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-C
T ss_pred Cccccc---c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-c
Confidence 776653 3 3556666777777777776666666666677777777777666666666666666666666666666 3
Q ss_pred echhhccCCCCCcEEEcCCCCcccC
Q 041570 336 LDGQGFLNFKSLERLDMGGARNALN 360 (394)
Q Consensus 336 ip~~~~~~~~~L~~L~l~~~~n~l~ 360 (394)
+|...+..+++|+.|++++ |.+.
T Consensus 281 ~~~~~~~~l~~L~~L~L~~--Np~~ 303 (452)
T 3zyi_A 281 LPHDLFTPLRYLVELHLHH--NPWN 303 (452)
T ss_dssp CCTTSSTTCTTCCEEECCS--SCEE
T ss_pred cChHHhccccCCCEEEccC--CCcC
Confidence 3333556666666666666 5544
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=6.2e-28 Score=237.24 Aligned_cols=284 Identities=19% Similarity=0.138 Sum_probs=228.6
Q ss_pred CCCCCCCCCCCccceeEe------cCCCCcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhh
Q 041570 49 QNWEDEQGDFCQWESVEC------SNTTGRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLE 122 (394)
Q Consensus 49 ~~W~~~~~~~c~w~gv~c------~~~~~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~ 122 (394)
..|.. ..++|.|.+..+ ......++.+++++++++.++. .. .++|++|++++|.++. +|.
T Consensus 13 ~~W~~-~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~~lp~-----~l---~~~L~~L~L~~N~l~~-lp~---- 78 (622)
T 3g06_A 13 SAWRR-AAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPD-----CL---PAHITTLVIPDNNLTS-LPA---- 78 (622)
T ss_dssp HHHHH-TCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCSCCCS-----CC---CTTCSEEEECSCCCSC-CCC----
T ss_pred HHHHh-cCCcchhccccccCcccccccCCCCcEEEecCCCcCccCh-----hh---CCCCcEEEecCCCCCC-CCC----
Confidence 45654 567899966322 1122358899999998865443 11 2799999999999984 332
Q ss_pred hhcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeeccccccCCCCCCEEEcCCCCCCccccccCCCCcEEEc
Q 041570 123 MLSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIEVKGSSKLQSLDLSHNNLNRIILSSLTTLSELYL 202 (394)
Q Consensus 123 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~L~~L~l 202 (394)
.+++|++|++++|.++ .+|. .+++|++|++++|.+++ +|. .+++|+.|++++|++++ +|..+++|++|++
T Consensus 79 ---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~-~l~~L~~L~L~~N~l~~-lp~~l~~L~~L~L 148 (622)
T 3g06_A 79 ---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA-LPSGLCKLWIFGNQLTS-LPVLPPGLQELSV 148 (622)
T ss_dssp ---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC-CCTTCCEEECCSSCCSC-CCCCCTTCCEEEC
T ss_pred ---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC-CCCCcCEEECCCCCCCc-CCCCCCCCCEEEC
Confidence 4689999999999998 5665 78999999999999988 443 67899999999999987 4557799999999
Q ss_pred cCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCC
Q 041570 203 SGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEAN 282 (394)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n 282 (394)
++|.+++ ++ . .+++|+.|++++|.+. .++ ..+++|++|++++|.+++ +|.. +++|+.|++++|
T Consensus 149 s~N~l~~-l~-~---~~~~L~~L~L~~N~l~--~l~----~~~~~L~~L~Ls~N~l~~---l~~~---~~~L~~L~L~~N 211 (622)
T 3g06_A 149 SDNQLAS-LP-A---LPSELCKLWAYNNQLT--SLP----MLPSGLQELSVSDNQLAS---LPTL---PSELYKLWAYNN 211 (622)
T ss_dssp CSSCCSC-CC-C---CCTTCCEEECCSSCCS--CCC----CCCTTCCEEECCSSCCSC---CCCC---CTTCCEEECCSS
T ss_pred cCCcCCC-cC-C---ccCCCCEEECCCCCCC--CCc----ccCCCCcEEECCCCCCCC---CCCc---cchhhEEECcCC
Confidence 9999884 44 2 4578999999999987 344 456899999999999987 4432 478999999999
Q ss_pred CCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCc
Q 041570 283 NFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNAS 362 (394)
Q Consensus 283 ~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g 362 (394)
.++.. |. .+++|+.|++++|.+++ +| ..+++|++|++++|.++ .+|. .+++|+.|++++ |.++
T Consensus 212 ~l~~l-~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~--N~L~-- 274 (622)
T 3g06_A 212 RLTSL-PA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYR--NQLT-- 274 (622)
T ss_dssp CCSSC-CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCS--SCCC--
T ss_pred ccccc-CC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCC--CCCC--
Confidence 99854 33 34889999999999995 55 45689999999999998 6776 568899999999 9998
Q ss_pred cccccccccCCCcEEeccccccceeEee
Q 041570 363 FLQIIGESMASLKHLSLSYSILNANCTI 390 (394)
Q Consensus 363 ~l~~~~~~~~~L~~L~l~~n~l~g~~~~ 390 (394)
.+|..+..+++|+.|++++|+++|.+|-
T Consensus 275 ~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 275 RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 8899999999999999999999987653
No 57
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=8.5e-29 Score=238.37 Aligned_cols=236 Identities=20% Similarity=0.260 Sum_probs=115.3
Q ss_pred CCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeeccccccCCCCCCEE
Q 041570 100 QQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIEVKGSSKLQSL 179 (394)
Q Consensus 100 ~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L 179 (394)
++|++|++++|.+++..+.. ++.+++|++|+|++|.+++..| ++.+++|++|++++|.+++..+. ++|++|
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~---~~L~~L 104 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAAD----LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG---PSIETL 104 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGG----GTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC---TTCCEE
T ss_pred CCccEEEeeCCcCCCCCHHH----HhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC---CCcCEE
Confidence 35555555555555444332 4555555555555555554333 55555555555555555542211 445555
Q ss_pred EcCCCCCCccccccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCC
Q 041570 180 DLSHNNLNRIILSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIR 259 (394)
Q Consensus 180 ~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 259 (394)
++++|.+++..+..+++|+.|++++|.+++..+ . .+..+++|++|++++|.++
T Consensus 105 ~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~-~--------------------------~~~~l~~L~~L~Ls~N~l~ 157 (487)
T 3oja_A 105 HAANNNISRVSCSRGQGKKNIYLANNKITMLRD-L--------------------------DEGCRSRVQYLDLKLNEID 157 (487)
T ss_dssp ECCSSCCCCEEECCCSSCEEEECCSSCCCSGGG-B--------------------------CGGGGSSEEEEECTTSCCC
T ss_pred ECcCCcCCCCCccccCCCCEEECCCCCCCCCCc-h--------------------------hhcCCCCCCEEECCCCCCC
Confidence 555555554444444444444444444443332 3 4444455555555555554
Q ss_pred CChhhhhhcC-CCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeech
Q 041570 260 DGSELLRSMG-SFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDG 338 (394)
Q Consensus 260 ~~~~~~~~l~-~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~ 338 (394)
+. .|..+. .+++|++|++++|.+++..+ +..+++|+.|++++|.+++ +|..+..+++|+.|++++|.++ .+|.
T Consensus 158 ~~--~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~ 231 (487)
T 3oja_A 158 TV--NFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEK 231 (487)
T ss_dssp EE--EGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECT
T ss_pred Cc--ChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccch
Confidence 43 333332 34555555555555544422 2234555555555555553 2223455555555555555555 2444
Q ss_pred hhccCCCCCcEEEcCCCCcccCCccccccccccCCCcEEecc
Q 041570 339 QGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLS 380 (394)
Q Consensus 339 ~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~ 380 (394)
.+..+++|+.|++++ |.+..+.+|..+..++.|+.++++
T Consensus 232 -~l~~l~~L~~L~l~~--N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 232 -ALRFSQNLEHFDLRG--NGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp -TCCCCTTCCEEECTT--CCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred -hhccCCCCCEEEcCC--CCCcCcchHHHHHhCCCCcEEecc
Confidence 344555555555555 555434444445555555555543
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=2.2e-27 Score=213.11 Aligned_cols=247 Identities=18% Similarity=0.196 Sum_probs=180.7
Q ss_pred cEEEcccccCCccchHhhhcCCCCCEEEcCCceeecccc--ccCCCCCCEEEcCCCCCCccccc---cCCCCcEEEccCc
Q 041570 131 KFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIE--VKGSSKLQSLDLSHNNLNRIILS---SLTTLSELYLSGM 205 (394)
Q Consensus 131 ~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~---~l~~L~~L~l~~~ 205 (394)
++++.+++.++ .+|..+ .++|++|++++|.+++..+ +..+++|++|++++|.+++..+. .+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 67888888887 566543 4689999999999887544 66778888999988888877554 6778888888888
Q ss_pred c-cCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCC
Q 041570 206 G-FEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNF 284 (394)
Q Consensus 206 ~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~ 284 (394)
. +. .+++..+..+++|++|++++|.+. .+++..+..+++|++|++++|.+++. .+..+..+++|++|++++|++
T Consensus 91 ~~l~-~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l 165 (285)
T 1ozn_A 91 AQLR-SVDPATFHGLGRLHTLHLDRCGLQ--ELGPGLFRGLAALQYLYLQDNALQAL--PDDTFRDLGNLTHLFLHGNRI 165 (285)
T ss_dssp TTCC-CCCTTTTTTCTTCCEEECTTSCCC--CCCTTTTTTCTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSCC
T ss_pred CCcc-ccCHHHhcCCcCCCEEECCCCcCC--EECHhHhhCCcCCCEEECCCCccccc--CHhHhccCCCccEEECCCCcc
Confidence 7 44 443367788888888888888876 34444677888888888888888765 445577788888888888888
Q ss_pred CccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccc
Q 041570 285 TATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFL 364 (394)
Q Consensus 285 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l 364 (394)
++..+..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++ ++...+..+++|++|++++ |.+. ...
T Consensus 166 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~--N~~~-c~~ 241 (285)
T 1ozn_A 166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLND--NPWV-CDC 241 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCS--SCEE-CSG
T ss_pred cccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccC--CCcc-CCC
Confidence 87766677788888888888888887777788888888888888888875 4433677788888888888 7776 333
Q ss_pred cccccccCCCcEEeccccccceeEee
Q 041570 365 QIIGESMASLKHLSLSYSILNANCTI 390 (394)
Q Consensus 365 ~~~~~~~~~L~~L~l~~n~l~g~~~~ 390 (394)
+.. .....++.+..+.+.+.|..|.
T Consensus 242 ~~~-~~~~~l~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 242 RAR-PLWAWLQKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp GGH-HHHHHHHHCCSEECCCBEEESG
T ss_pred CcH-HHHHHHHhcccccCccccCCch
Confidence 311 1112345555667777777764
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=4.3e-27 Score=224.98 Aligned_cols=244 Identities=21% Similarity=0.173 Sum_probs=212.1
Q ss_pred EEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCC
Q 041570 74 IGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSS 153 (394)
Q Consensus 74 ~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~ 153 (394)
..++.++.+++..+.. -.+++++|++++|.+++..+.. +.++++|++|+|++|.+++..+..|.++++
T Consensus 57 ~~v~c~~~~l~~iP~~--------~~~~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 124 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQG--------IPSNTRYLNLMENNIQMIQADT----FRHLHHLEVLQLGRNSIRQIEVGAFNGLAS 124 (452)
T ss_dssp CEEECCSSCCSSCCSC--------CCTTCSEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred cEEEECCCCcCccCCC--------CCCCccEEECcCCcCceECHHH----cCCCCCCCEEECCCCccCCcChhhccCccc
Confidence 3566777766544431 1268999999999998876654 889999999999999999888889999999
Q ss_pred CCEEEcCCceeecccc--ccCCCCCCEEEcCCCCCCccccc---cCCCCcEEEccCcccCCccChhhhcCCCCCCEEECC
Q 041570 154 LISLSLSHNKLEGSIE--VKGSSKLQSLDLSHNNLNRIILS---SLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLS 228 (394)
Q Consensus 154 L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 228 (394)
|++|++++|.+++..+ +..+++|++|++++|+++...+. .+++|++|++++|...+.++...+..+++|++|+++
T Consensus 125 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 204 (452)
T 3zyi_A 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204 (452)
T ss_dssp CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECC
Confidence 9999999999987554 66789999999999999876553 789999999999776667776789999999999999
Q ss_pred CCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcC
Q 041570 229 NNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSL 308 (394)
Q Consensus 229 ~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 308 (394)
+|++. .++ .+..+++|++|++++|.+++. .|..+..+++|++|++++|++++..+..|..+++|+.|++++|.+
T Consensus 205 ~n~l~--~~~--~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 278 (452)
T 3zyi_A 205 MCNIK--DMP--NLTPLVGLEELEMSGNHFPEI--RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278 (452)
T ss_dssp TSCCS--SCC--CCTTCTTCCEEECTTSCCSEE--CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCccc--ccc--cccccccccEEECcCCcCccc--CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC
Confidence 99987 344 588999999999999999987 688899999999999999999999999999999999999999999
Q ss_pred ChhhhhchhccCCCCeEecCCccccee
Q 041570 309 DINLLKTIASFTSLKNLSMVSCEVNGV 335 (394)
Q Consensus 309 ~~~~~~~l~~~~~L~~L~l~~n~l~~~ 335 (394)
++..+..+..+++|++|++++|.+...
T Consensus 279 ~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 279 SSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp SCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred CccChHHhccccCCCEEEccCCCcCCC
Confidence 977777889999999999999987643
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=3.2e-27 Score=225.11 Aligned_cols=244 Identities=23% Similarity=0.355 Sum_probs=179.1
Q ss_pred CCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeecccc--ccCCCCCCE
Q 041570 101 QLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIE--VKGSSKLQS 178 (394)
Q Consensus 101 ~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~ 178 (394)
..+.++.++..++. +|.. + .+++++|+|++|.+.+..+..|.++++|++|++++|.+++..+ +..+++|++
T Consensus 44 ~~~~v~c~~~~l~~-iP~~----~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~ 116 (440)
T 3zyj_A 44 QFSKVICVRKNLRE-VPDG----I--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNT 116 (440)
T ss_dssp TSCEEECCSCCCSS-CCSC----C--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCE
T ss_pred CCCEEEeCCCCcCc-CCCC----C--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCE
Confidence 45688888888864 4432 2 3689999999999998777889999999999999999987543 667788888
Q ss_pred EEcCCCCCCccccc---cCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCC
Q 041570 179 LDLSHNNLNRIILS---SLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSG 255 (394)
Q Consensus 179 L~l~~n~l~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~ 255 (394)
|++++|++++..+. .+++|++|++++|.+. .++...+..+++|++|++++|+.. +.++...+..+++|++|++++
T Consensus 117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l-~~i~~~~~~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRL-SYISEGAFEGLSNLRYLNLAM 194 (440)
T ss_dssp EECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTC-CEECTTTTTTCSSCCEEECTT
T ss_pred EECCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCc-ceeCcchhhcccccCeecCCC
Confidence 88888888766543 6677788888887776 333366777777888888775554 456655677777777777777
Q ss_pred CCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCccccee
Q 041570 256 VGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGV 335 (394)
Q Consensus 256 n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 335 (394)
|.++. +| .+..+++|++|++++|++++..|..|..+++|+.|++++|.+++..+..|..+++|++|+|++|.++ .
T Consensus 195 n~l~~---~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ 269 (440)
T 3zyj_A 195 CNLRE---IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-L 269 (440)
T ss_dssp SCCSS---CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-C
T ss_pred CcCcc---cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-c
Confidence 77765 33 3566777777777777777776777777777777777777777666666777777777777777777 3
Q ss_pred echhhccCCCCCcEEEcCCCCcccC
Q 041570 336 LDGQGFLNFKSLERLDMGGARNALN 360 (394)
Q Consensus 336 ip~~~~~~~~~L~~L~l~~~~n~l~ 360 (394)
+|...+..+++|+.|++++ |.+.
T Consensus 270 ~~~~~~~~l~~L~~L~L~~--Np~~ 292 (440)
T 3zyj_A 270 LPHDLFTPLHHLERIHLHH--NPWN 292 (440)
T ss_dssp CCTTTTSSCTTCCEEECCS--SCEE
T ss_pred cChhHhccccCCCEEEcCC--CCcc
Confidence 4443666677777777777 6554
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=2.5e-29 Score=228.63 Aligned_cols=253 Identities=19% Similarity=0.196 Sum_probs=165.4
Q ss_pred CCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCC-ccchHhhh-------cCCCCCEEEcCCceeeccc
Q 041570 97 TPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFK-NSISSSLA-------RLSSLISLSLSHNKLEGSI 168 (394)
Q Consensus 97 ~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~-~~~p~~l~-------~l~~L~~L~l~~n~l~~~~ 168 (394)
...++|+++++++|.+ .+|..... . |++|++++|.+. ..+|..+. ++++|++|++++|.+++.+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~----~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 111 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTD----I--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTA 111 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHH----H--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCC
T ss_pred ccCCCceeEeeccccc--ccHHHHHH----H--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchh
Confidence 3445566666666665 33432211 1 555566665552 33444433 4556666666666555544
Q ss_pred cccCCCCCCEEEcCCCCCCccccccCCCCcEEEccCcccCCccChhhhcCC-----CCCCEEECCCCCCCCCcccCcCCC
Q 041570 169 EVKGSSKLQSLDLSHNNLNRIILSSLTTLSELYLSGMGFEGTFDVQEFDSL-----SNLEELYLSNNKGINNFVVPQDYR 243 (394)
Q Consensus 169 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~~ 243 (394)
|..- ....+++|++|++++|.+++. | ..++.+ ++|++|++++|++. .+++..+.
T Consensus 112 ~~~~-----------------~~~~l~~L~~L~Ls~N~l~~~-~-~~~~~l~~~~~~~L~~L~L~~N~l~--~~~~~~~~ 170 (312)
T 1wwl_A 112 PPPL-----------------LEATGPDLNILNLRNVSWATR-D-AWLAELQQWLKPGLKVLSIAQAHSL--NFSCEQVR 170 (312)
T ss_dssp CCCS-----------------SSCCSCCCSEEEEESCBCSSS-S-SHHHHHHTTCCTTCCEEEEESCSCC--CCCTTTCC
T ss_pred HHHH-----------------HHhcCCCccEEEccCCCCcch-h-HHHHHHHHhhcCCCcEEEeeCCCCc--cchHHHhc
Confidence 4100 001344555555555555544 3 444444 78888888888876 34444778
Q ss_pred CCCCcCEEEcCCCCCCCChhhhhhc--CCCCCCCEEeCcCCCCCcc---chhhcCCCCCCCEEEcCCCcCChhhh-hchh
Q 041570 244 GLSKLKRLDLSGVGIRDGSELLRSM--GSFPSLKTLFLEANNFTAT---TTQELHNFTNLEFLNLRHSSLDINLL-KTIA 317 (394)
Q Consensus 244 ~l~~L~~L~l~~n~~~~~~~~~~~l--~~~~~L~~L~l~~n~~~~~---~~~~l~~~~~L~~L~l~~n~l~~~~~-~~l~ 317 (394)
.+++|++|++++|.+.+...++..+ ..+++|++|++++|++++. ....+..+++|+.|++++|.+++.+| ..+.
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 8888888888888876542234444 6778888888888888732 22444677888888888888887664 4456
Q ss_pred ccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccccccccccCCCcEEecccccccee
Q 041570 318 SFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLSYSILNAN 387 (394)
Q Consensus 318 ~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~l~g~ 387 (394)
.+++|++|++++|.++ .+|. .+. ++|++|++++ |.++ .+|. +..+++|++|++++|+++++
T Consensus 251 ~l~~L~~L~Ls~N~l~-~ip~-~~~--~~L~~L~Ls~--N~l~--~~p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLK-QVPK-GLP--AKLSVLDLSY--NRLD--RNPS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CCTTCCEEECTTSCCS-SCCS-SCC--SEEEEEECCS--SCCC--SCCC-TTTSCEEEEEECTTCTTTCC
T ss_pred hcCCCCEEECCCCccC-hhhh-hcc--CCceEEECCC--CCCC--CChh-HhhCCCCCEEeccCCCCCCC
Confidence 6788999999999888 7777 443 7899999999 8888 4466 88889999999999988763
No 62
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=2.8e-29 Score=240.86 Aligned_cols=308 Identities=20% Similarity=0.140 Sum_probs=177.1
Q ss_pred cEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCC-CCcEEEcccccCCc----cchH
Q 041570 72 RVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLS-NLKFLDLRMNLFKN----SISS 146 (394)
Q Consensus 72 ~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~-~L~~L~L~~n~~~~----~~p~ 146 (394)
+++.++++++++++.+...++ ..+..+++|++|++++|.+++..+...+..+.... +|++|++++|.+++ .++.
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CccEEEccCCCCCHHHHHHHH-HHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 455666666655432211111 22455566777777766665433332222222211 57777777776663 4466
Q ss_pred hhhcCCCCCEEEcCCceeecccc-------ccCCCCCCEEEcCCCCCCcccc----c---cCCCCcEEEccCcccCCccC
Q 041570 147 SLARLSSLISLSLSHNKLEGSIE-------VKGSSKLQSLDLSHNNLNRIIL----S---SLTTLSELYLSGMGFEGTFD 212 (394)
Q Consensus 147 ~l~~l~~L~~L~l~~n~l~~~~~-------~~~~~~L~~L~l~~n~l~~~~~----~---~l~~L~~L~l~~~~~~~~~~ 212 (394)
.+.++++|++|++++|.+++..+ ....++|++|++++|++++..+ . .+++|++|++++|.++...+
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence 66667777777777776654222 1223567777777776665432 1 45677777777776653222
Q ss_pred hhhhc-----CCCCCCEEECCCCCCCCCc---ccCcCCCCCCCcCEEEcCCCCCCCC--hhhhh-hcCCCCCCCEEeCcC
Q 041570 213 VQEFD-----SLSNLEELYLSNNKGINNF---VVPQDYRGLSKLKRLDLSGVGIRDG--SELLR-SMGSFPSLKTLFLEA 281 (394)
Q Consensus 213 ~~~~~-----~l~~L~~L~l~~n~~~~~~---~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~-~l~~~~~L~~L~l~~ 281 (394)
..+. ..++|++|++++|.+.... ++. .+..+++|++|++++|.+++. ..+.+ ....+++|++|++++
T Consensus 188 -~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~ 265 (461)
T 1z7x_W 188 -RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG-IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265 (461)
T ss_dssp -HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH-HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred -HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH-HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcC
Confidence 2222 2456777777777665111 222 455667777777777766532 11112 223466777777777
Q ss_pred CCCCcc----chhhcCCCCCCCEEEcCCCcCChhhhhchhc-----cCCCCeEecCCccccee----echhhccCCCCCc
Q 041570 282 NNFTAT----TTQELHNFTNLEFLNLRHSSLDINLLKTIAS-----FTSLKNLSMVSCEVNGV----LDGQGFLNFKSLE 348 (394)
Q Consensus 282 n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~-----~~~L~~L~l~~n~l~~~----ip~~~~~~~~~L~ 348 (394)
|.+++. ++..+..+++|+.|++++|.+++..+..+.. .++|++|++++|.+++. ++. .+..+++|+
T Consensus 266 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~ 344 (461)
T 1z7x_W 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS-VLAQNRFLL 344 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH-HHHHCSSCC
T ss_pred CCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH-HHhhCCCcc
Confidence 777654 4555666777777777777776554444432 25777777777777654 344 556667788
Q ss_pred EEEcCCCCcccCCccccccccc-----cCCCcEEeccccccce
Q 041570 349 RLDMGGARNALNASFLQIIGES-----MASLKHLSLSYSILNA 386 (394)
Q Consensus 349 ~L~l~~~~n~l~~g~l~~~~~~-----~~~L~~L~l~~n~l~g 386 (394)
+|++++ |.++ +..+..+.. .++|++|++++|++++
T Consensus 345 ~L~Ls~--n~i~-~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 345 ELQISN--NRLE-DAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp EEECCS--SBCH-HHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred EEEccC--Cccc-cccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 888887 7776 333333322 5678888888887775
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.6e-27 Score=213.89 Aligned_cols=224 Identities=21% Similarity=0.228 Sum_probs=133.8
Q ss_pred EEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCC
Q 041570 74 IGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSS 153 (394)
Q Consensus 74 ~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~ 153 (394)
+.++.++.+++..+. .-.++|++|++++|.+++..+.. +..+++|++|++++|.+++..|..+.++++
T Consensus 14 ~~~~c~~~~l~~ip~--------~~~~~l~~L~l~~n~i~~~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 81 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV--------GIPAASQRIFLHGNRISHVPAAS----FRACRNLTILWLHSNVLARIDAAAFTGLAL 81 (285)
T ss_dssp CEEECCSSCCSSCCT--------TCCTTCSEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred eEEEcCcCCcccCCc--------CCCCCceEEEeeCCcCCccCHHH----cccCCCCCEEECCCCccceeCHhhcCCccC
Confidence 455566666544332 12367888888888887655443 778888888888888888766778888888
Q ss_pred CCEEEcCCce-eecccc--ccCCCCCCEEEcCCCCCCccccccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCC
Q 041570 154 LISLSLSHNK-LEGSIE--VKGSSKLQSLDLSHNNLNRIILSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNN 230 (394)
Q Consensus 154 L~~L~l~~n~-l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n 230 (394)
|++|++++|. +....+ +..+++|++|++++|.+++..+ ..+..+++|++|++++|
T Consensus 82 L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------------------~~~~~l~~L~~L~l~~n 139 (285)
T 1ozn_A 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP----------------------GLFRGLAALQYLYLQDN 139 (285)
T ss_dssp CCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCT----------------------TTTTTCTTCCEEECCSS
T ss_pred CCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECH----------------------hHhhCCcCCCEEECCCC
Confidence 8888888886 554323 4455666666666665554433 34455555555555555
Q ss_pred CCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCCh
Q 041570 231 KGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDI 310 (394)
Q Consensus 231 ~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~ 310 (394)
.+. .++...+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++
T Consensus 140 ~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 215 (285)
T 1ozn_A 140 ALQ--ALPDDTFRDLGNLTHLFLHGNRISSV--PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215 (285)
T ss_dssp CCC--CCCTTTTTTCTTCCEEECCSSCCCEE--CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred ccc--ccCHhHhccCCCccEEECCCCccccc--CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc
Confidence 554 23333455555555555555555542 22234555555555555555555555555555555555555555555
Q ss_pred hhhhchhccCCCCeEecCCccccee
Q 041570 311 NLLKTIASFTSLKNLSMVSCEVNGV 335 (394)
Q Consensus 311 ~~~~~l~~~~~L~~L~l~~n~l~~~ 335 (394)
..+..+..+++|++|++++|.+...
T Consensus 216 ~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 216 LPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp CCHHHHTTCTTCCEEECCSSCEECS
T ss_pred CCHHHcccCcccCEEeccCCCccCC
Confidence 4444455555555555555555543
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=4.9e-28 Score=233.04 Aligned_cols=231 Identities=23% Similarity=0.212 Sum_probs=196.6
Q ss_pred cEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcC
Q 041570 72 RVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARL 151 (394)
Q Consensus 72 ~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l 151 (394)
+++.|+++++.+.... +..|..+++|++|+|++|.+++..+ +..+++|++|++++|.+++. | ..
T Consensus 35 ~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~l-~----~~ 98 (487)
T 3oja_A 35 NVKELDLSGNPLSQIS-----AADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQEL-L----VG 98 (487)
T ss_dssp GCCEEECCSSCCCCCC-----GGGGTTCTTCCEEECTTSCCEEEEE------CTTCTTCCEEECCSSEEEEE-E----EC
T ss_pred CccEEEeeCCcCCCCC-----HHHHhCCCCCCEEEeeCCCCCCCcc------cccCCCCCEEEecCCcCCCC-C----CC
Confidence 7999999999886533 3457889999999999999987665 78899999999999999843 3 34
Q ss_pred CCCCEEEcCCceeeccccccCCCCCCEEEcCCCCCCccccc---cCCCCcEEEccCcccCCccChhhh-cCCCCCCEEEC
Q 041570 152 SSLISLSLSHNKLEGSIEVKGSSKLQSLDLSHNNLNRIILS---SLTTLSELYLSGMGFEGTFDVQEF-DSLSNLEELYL 227 (394)
Q Consensus 152 ~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l 227 (394)
++|++|++++|.+++. +...+++|++|++++|.+++..+. .+++|++|++++|.+++..+ ..+ ..+++|++|++
T Consensus 99 ~~L~~L~L~~N~l~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 99 PSIETLHAANNNISRV-SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNL 176 (487)
T ss_dssp TTCCEEECCSSCCCCE-EECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG-GGGGGGTTTCCEEEC
T ss_pred CCcCEEECcCCcCCCC-CccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh-HHHhhhCCcccEEec
Confidence 8999999999999884 445678999999999999998765 68999999999999998776 555 48999999999
Q ss_pred CCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCc
Q 041570 228 SNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSS 307 (394)
Q Consensus 228 ~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 307 (394)
++|.+. .++ ....+++|++|++++|.+++ +|+.+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.
T Consensus 177 s~N~l~--~~~--~~~~l~~L~~L~Ls~N~l~~---~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 177 QYNFIY--DVK--GQVVFAKLKTLDLSSNKLAF---MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp TTSCCC--EEE--CCCCCTTCCEEECCSSCCCE---ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCC
T ss_pred CCCccc--ccc--ccccCCCCCEEECCCCCCCC---CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCC
Confidence 999987 334 34468999999999999987 55568889999999999999996 56678889999999999999
Q ss_pred CC-hhhhhchhccCCCCeEecC
Q 041570 308 LD-INLLKTIASFTSLKNLSMV 328 (394)
Q Consensus 308 l~-~~~~~~l~~~~~L~~L~l~ 328 (394)
+. +.+|..+..++.|+.+++.
T Consensus 249 l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 249 FHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp BCHHHHHHHHTTCHHHHHHHHH
T ss_pred CcCcchHHHHHhCCCCcEEecc
Confidence 98 7788888888888888875
No 65
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=8.3e-26 Score=215.51 Aligned_cols=266 Identities=21% Similarity=0.228 Sum_probs=191.3
Q ss_pred CcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhc
Q 041570 71 GRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLAR 150 (394)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~ 150 (394)
.+++.++++++.++..+. ..++|++|++++|.+++.. . + .++|++|++++|.+++ +| .+++
T Consensus 91 ~~L~~L~l~~n~l~~lp~---------~~~~L~~L~l~~n~l~~l~-~-----~--~~~L~~L~L~~n~l~~-lp-~~~~ 151 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPE---------LPQSLKSLLVDNNNLKALS-D-----L--PPLLEYLGVSNNQLEK-LP-ELQN 151 (454)
T ss_dssp TTCSEEECCSSCCSSCCC---------CCTTCCEEECCSSCCSCCC-S-----C--CTTCCEEECCSSCCSS-CC-CCTT
T ss_pred CCCCEEEccCCcCCcccc---------ccCCCcEEECCCCccCccc-C-----C--CCCCCEEECcCCCCCC-Cc-ccCC
Confidence 456777777776654221 1367888888888776522 1 1 2678888888888885 66 5888
Q ss_pred CCCCCEEEcCCceeeccccccCCCCCCEEEcCCCCCCccccc--cCCCCcEEEccCcccCCccChhhhcCCCCCCEEECC
Q 041570 151 LSSLISLSLSHNKLEGSIEVKGSSKLQSLDLSHNNLNRIILS--SLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLS 228 (394)
Q Consensus 151 l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 228 (394)
+++|++|++++|.+++ +|. ...+|++|++++|++++. |. .+++|++|++++|.+++ +| . ..++|++|+++
T Consensus 152 l~~L~~L~l~~N~l~~-lp~-~~~~L~~L~L~~n~l~~l-~~~~~l~~L~~L~l~~N~l~~-l~-~---~~~~L~~L~l~ 223 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKK-LPD-LPPSLEFIAAGNNQLEEL-PELQNLPFLTAIYADNNSLKK-LP-D---LPLSLESIVAG 223 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSSC-CCCTTCTTCCEEECCSSCCSS-CC-C---CCTTCCEEECC
T ss_pred CCCCCEEECCCCcCcc-cCC-CcccccEEECcCCcCCcC-ccccCCCCCCEEECCCCcCCc-CC-C---CcCcccEEECc
Confidence 8888888888888876 442 235888888888888774 33 77888888888888874 43 2 22578888888
Q ss_pred CCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcC
Q 041570 229 NNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSL 308 (394)
Q Consensus 229 ~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 308 (394)
+|.+. .+| .+..+++|++|++++|.+++ +|.. +++|++|++++|++++ +|.. .++|+.|++++|.+
T Consensus 224 ~n~l~--~lp--~~~~l~~L~~L~l~~N~l~~---l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l 289 (454)
T 1jl5_A 224 NNILE--ELP--ELQNLPFLTTIYADNNLLKT---LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIF 289 (454)
T ss_dssp SSCCS--SCC--CCTTCTTCCEEECCSSCCSS---CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCC
T ss_pred CCcCC--ccc--ccCCCCCCCEEECCCCcCCc---cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCcc
Confidence 88876 455 37888999999999998886 3432 3789999999998886 3332 36788888888877
Q ss_pred Ch--hhhhchh-------------cc-CCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccccccccccC
Q 041570 309 DI--NLLKTIA-------------SF-TSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMA 372 (394)
Q Consensus 309 ~~--~~~~~l~-------------~~-~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~ 372 (394)
++ .+|..+. .+ ++|++|++++|.+++ +|. . +++|++|++++ |.++ .+|. .++
T Consensus 290 ~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~-~---~~~L~~L~L~~--N~l~--~lp~---~l~ 357 (454)
T 1jl5_A 290 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPA-L---PPRLERLIASF--NHLA--EVPE---LPQ 357 (454)
T ss_dssp SEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCC-C---CTTCCEEECCS--SCCS--CCCC---CCT
T ss_pred CcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-ccc-c---CCcCCEEECCC--Cccc--cccc---hhh
Confidence 76 3332221 12 477888888887774 665 2 47889999998 8887 6776 468
Q ss_pred CCcEEeccccccce--eEe
Q 041570 373 SLKHLSLSYSILNA--NCT 389 (394)
Q Consensus 373 ~L~~L~l~~n~l~g--~~~ 389 (394)
+|++|++++|+++| .+|
T Consensus 358 ~L~~L~L~~N~l~~l~~ip 376 (454)
T 1jl5_A 358 NLKQLHVEYNPLREFPDIP 376 (454)
T ss_dssp TCCEEECCSSCCSSCCCCC
T ss_pred hccEEECCCCCCCcCCCCh
Confidence 99999999999998 555
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=7.7e-28 Score=218.80 Aligned_cols=276 Identities=16% Similarity=0.096 Sum_probs=191.5
Q ss_pred CCCCCCCCCCCCccceeEecCCCCcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCC-Cccccchh---hh
Q 041570 48 LQNWEDEQGDFCQWESVECSNTTGRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIA-GCVENEGL---EM 123 (394)
Q Consensus 48 ~~~W~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~---~~ 123 (394)
...|.. ...|+.+..+.......+++.++++++.+ ..+ .... ..|++|++++|.++ +.++.... ..
T Consensus 21 ~~~~~~-~~~c~~~~~~~~~~~~~~L~~l~l~~n~l-~~p-----~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 90 (312)
T 1wwl_A 21 KPDWSS-AFNCLGAADVELYGGGRSLEYLLKRVDTE-ADL-----GQFT---DIIKSLSLKRLTVRAARIPSRILFGALR 90 (312)
T ss_dssp SCCGGG-GGGSSSCSEEEEEEEEEECTTHHHHCCTT-CCC-----HHHH---HHHHHCCCCEEEEEEEECBHHHHHHHHH
T ss_pred ccchHH-HhhhhccccEEEEccCCCceeEeeccccc-ccH-----HHHH---HHHhhcccccccccCCCcCHHHHHHHHH
Confidence 456753 34455555544322334567777887776 221 1111 12888899999884 34444210 11
Q ss_pred hcCCCCCcEEEcccccCCccchHhh--hcCCCCCEEEcCCceeecccc--ccCCCCCCEEEcCCCCCCccccccCCCCcE
Q 041570 124 LSRLSNLKFLDLRMNLFKNSISSSL--ARLSSLISLSLSHNKLEGSIE--VKGSSKLQSLDLSHNNLNRIILSSLTTLSE 199 (394)
Q Consensus 124 l~~l~~L~~L~L~~n~~~~~~p~~l--~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~l~~L~~ 199 (394)
+.++++|++|++++|.+++.+|..+ +.+++|++|++++|.+++. | +..+ .....++|++
T Consensus 91 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l----------------~~~~~~~L~~ 153 (312)
T 1wwl_A 91 VLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL----------------QQWLKPGLKV 153 (312)
T ss_dssp HHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH----------------HTTCCTTCCE
T ss_pred hcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH----------------HHhhcCCCcE
Confidence 1268999999999999999898876 8899999999999988874 3 1111 0001255666
Q ss_pred EEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCc--ccC-cCCCCCCCcCEEEcCCCCCCCChhhhhh-cCCCCCCC
Q 041570 200 LYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNF--VVP-QDYRGLSKLKRLDLSGVGIRDGSELLRS-MGSFPSLK 275 (394)
Q Consensus 200 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~-l~~~~~L~ 275 (394)
|++++|.+.+..+ ..++.+++|++|++++|++. +. .+. ..+..+++|++|++++|.+++...++.. +..+++|+
T Consensus 154 L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~ 231 (312)
T 1wwl_A 154 LSIAQAHSLNFSC-EQVRVFPALSTLDLSDNPEL-GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQ 231 (312)
T ss_dssp EEEESCSCCCCCT-TTCCCCSSCCEEECCSCTTC-HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCS
T ss_pred EEeeCCCCccchH-HHhccCCCCCEEECCCCCcC-cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCC
Confidence 6666666654444 67788888888888888876 43 122 1237888899999999988853224433 35678899
Q ss_pred EEeCcCCCCCccch-hhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCC
Q 041570 276 TLFLEANNFTATTT-QELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGG 354 (394)
Q Consensus 276 ~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~ 354 (394)
+|++++|++++..| ..+..+++|+.|++++|.++ .+|..+. ++|++|++++|.+++. |. +..+++|++|++++
T Consensus 232 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~--~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS--PDELPQVGNLSLKG 305 (312)
T ss_dssp EEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC--TTTSCEEEEEECTT
T ss_pred EEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh--HhhCCCCCEEeccC
Confidence 99999999888664 45566789999999999998 6777665 7899999999999854 55 67888999999999
Q ss_pred CCcccC
Q 041570 355 ARNALN 360 (394)
Q Consensus 355 ~~n~l~ 360 (394)
|.++
T Consensus 306 --N~l~ 309 (312)
T 1wwl_A 306 --NPFL 309 (312)
T ss_dssp --CTTT
T ss_pred --CCCC
Confidence 8887
No 67
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.6e-26 Score=213.95 Aligned_cols=252 Identities=23% Similarity=0.240 Sum_probs=209.0
Q ss_pred CcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhc
Q 041570 71 GRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLAR 150 (394)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~ 150 (394)
.+++.+++++++++..+ ...+..+++|++|++++|.+++..+.. +.++++|++|++++|.+++..+..+++
T Consensus 52 ~~L~~L~l~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 122 (353)
T 2z80_A 52 EAVKSLDLSNNRITYIS-----NSDLQRCVNLQALVLTSNGINTIEEDS----FSSLGSLEHLDLSYNYLSNLSSSWFKP 122 (353)
T ss_dssp TTCCEEECTTSCCCEEC-----TTTTTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCSSCCHHHHTT
T ss_pred ccCcEEECCCCcCcccC-----HHHhccCCCCCEEECCCCccCccCHhh----cCCCCCCCEEECCCCcCCcCCHhHhCC
Confidence 47999999999886433 335788999999999999998766654 889999999999999999655556899
Q ss_pred CCCCCEEEcCCceeecccc---ccCCCCCCEEEcCCCC-CCccccc---cCCCCcEEEccCcccCCccChhhhcCCCCCC
Q 041570 151 LSSLISLSLSHNKLEGSIE---VKGSSKLQSLDLSHNN-LNRIILS---SLTTLSELYLSGMGFEGTFDVQEFDSLSNLE 223 (394)
Q Consensus 151 l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~-l~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 223 (394)
+++|++|++++|.+++..+ +..+++|++|++++|+ +.+..+. .+++|++|++++|.+.+..+ ..++.+++|+
T Consensus 123 l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~ 201 (353)
T 2z80_A 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP-KSLKSIQNVS 201 (353)
T ss_dssp CTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT-TTTTTCSEEE
T ss_pred CccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH-HHHhccccCC
Confidence 9999999999999987433 5677999999999995 6655443 78899999999999987666 7899999999
Q ss_pred EEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhh---cCCCCCCCEEeCcCCCCCc----cchhhcCCCC
Q 041570 224 ELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRS---MGSFPSLKTLFLEANNFTA----TTTQELHNFT 296 (394)
Q Consensus 224 ~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~---l~~~~~L~~L~l~~n~~~~----~~~~~l~~~~ 296 (394)
+|++++|.+. .++...+..+++|++|++++|.+++. .+.. ....+.++.++++++.+++ .+|..+..++
T Consensus 202 ~L~l~~n~l~--~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~ 277 (353)
T 2z80_A 202 HLILHMKQHI--LLLEIFVDVTSSVECLELRDTDLDTF--HFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS 277 (353)
T ss_dssp EEEEECSCST--THHHHHHHHTTTEEEEEEESCBCTTC--CCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCT
T ss_pred eecCCCCccc--cchhhhhhhcccccEEECCCCccccc--cccccccccccchhhccccccccccCcchhhhHHHHhccc
Confidence 9999999975 55554566789999999999999874 2222 2345679999999999886 3678889999
Q ss_pred CCCEEEcCCCcCChhhhhc-hhccCCCCeEecCCcccceeec
Q 041570 297 NLEFLNLRHSSLDINLLKT-IASFTSLKNLSMVSCEVNGVLD 337 (394)
Q Consensus 297 ~L~~L~l~~n~l~~~~~~~-l~~~~~L~~L~l~~n~l~~~ip 337 (394)
+|+.|++++|.++ .+|.. +..+++|++|++++|.+.+..|
T Consensus 278 ~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 278 GLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 9999999999999 56655 5899999999999999998776
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=6.5e-25 Score=195.31 Aligned_cols=216 Identities=22% Similarity=0.277 Sum_probs=146.2
Q ss_pred CCCCccceeEecCCCCcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEc
Q 041570 56 GDFCQWESVECSNTTGRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDL 135 (394)
Q Consensus 56 ~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L 135 (394)
.+.|.|.|+.|.. .+..+.+++++++++..+.. -.+++++|++++|.+++..+.. +.++++|++|++
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~~ip~~--------~~~~l~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l 68 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSKKLTAIPSN--------IPADTKKLDLQSNKLSSLPSKA----FHRLTKLRLLYL 68 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTSCCSSCCSC--------CCTTCSEEECCSSCCSCCCTTS----SSSCTTCCEEEC
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCCCCCccCCC--------CCCCCCEEECcCCCCCeeCHHH----hcCCCCCCEEEC
Confidence 4789999999863 33456788888877544321 1246788888888777655433 677778888888
Q ss_pred ccccCCccchHhhhcCCCCCEEEcCCceeecccc--ccCCCCCCEEEcCCCCCCccccccCCCCcEEEccCcccCCccCh
Q 041570 136 RMNLFKNSISSSLARLSSLISLSLSHNKLEGSIE--VKGSSKLQSLDLSHNNLNRIILSSLTTLSELYLSGMGFEGTFDV 213 (394)
Q Consensus 136 ~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~ 213 (394)
++|.++...+..+.++++|++|++++|.+++..+ +. .+++|++|++++|.+++..+
T Consensus 69 ~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---------------------~l~~L~~L~l~~n~l~~~~~- 126 (270)
T 2o6q_A 69 NDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFD---------------------QLVNLAELRLDRNQLKSLPP- 126 (270)
T ss_dssp CSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTT---------------------TCSSCCEEECCSSCCCCCCT-
T ss_pred CCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcc---------------------cccCCCEEECCCCccCeeCH-
Confidence 8877774444445667777777777776655222 22 33445555555555543333
Q ss_pred hhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcC
Q 041570 214 QEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELH 293 (394)
Q Consensus 214 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~ 293 (394)
..++.+++|++|++++|.+. .++...+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..+..+.
T Consensus 127 ~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 202 (270)
T 2o6q_A 127 RVFDSLTKLTYLSLGYNELQ--SLPKGVFDKLTSLKELRLYNNQLKRV--PEGAFDKLTELKTLKLDNNQLKRVPEGAFD 202 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCSCC--CTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred HHhCcCcCCCEEECCCCcCC--ccCHhHccCCcccceeEecCCcCcEe--ChhHhccCCCcCEEECCCCcCCcCCHHHhc
Confidence 56777888888888888776 45554677788888888888887765 444567777888888888888776666677
Q ss_pred CCCCCCEEEcCCCcCCh
Q 041570 294 NFTNLEFLNLRHSSLDI 310 (394)
Q Consensus 294 ~~~~L~~L~l~~n~l~~ 310 (394)
.+++|+.|++++|.+..
T Consensus 203 ~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 203 SLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TCTTCCEEECCSSCBCC
T ss_pred cccCCCEEEecCCCeeC
Confidence 77888888888887653
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=8.8e-25 Score=195.13 Aligned_cols=187 Identities=22% Similarity=0.263 Sum_probs=125.7
Q ss_pred CCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCC
Q 041570 194 LTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPS 273 (394)
Q Consensus 194 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~ 273 (394)
+++|++|++++|.+++..+ ..+..+++|++|++++|.+. .+++..+..+++|++|++++|.+.+. .+..+..+++
T Consensus 51 l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~ 125 (276)
T 2z62_A 51 FPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQ--SLALGAFSGLSSLQKLVAVETNLASL--ENFPIGHLKT 125 (276)
T ss_dssp CTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCC--EECTTTTTTCTTCCEEECTTSCCCCS--TTCCCTTCTT
T ss_pred ccCCcEEECCCCcCCccCH-HHccCCcCCCEEECCCCccC--ccChhhhcCCccccEEECCCCCcccc--CchhcccCCC
Confidence 4444555555554442222 45667777777777777765 34444677777777777777777664 3335667777
Q ss_pred CCEEeCcCCCCCcc-chhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCC----eEecCCcccceeechhhccCCCCCc
Q 041570 274 LKTLFLEANNFTAT-TTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLK----NLSMVSCEVNGVLDGQGFLNFKSLE 348 (394)
Q Consensus 274 L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~----~L~l~~n~l~~~ip~~~~~~~~~L~ 348 (394)
|++|++++|.+++. +|..+..+++|+.|++++|.+++..+..+..+++|+ +|++++|.+++ ++...+ ...+|+
T Consensus 126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~-~~~~~~-~~~~L~ 203 (276)
T 2z62_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAF-KEIRLK 203 (276)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCE-ECTTSS-CSCCEE
T ss_pred CCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccc-cCcccc-CCCccc
Confidence 88888888777663 467777778888888888887766666666666666 77888888774 444233 334788
Q ss_pred EEEcCCCCcccCCccccccccccCCCcEEeccccccceeEee
Q 041570 349 RLDMGGARNALNASFLQIIGESMASLKHLSLSYSILNANCTI 390 (394)
Q Consensus 349 ~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~l~g~~~~ 390 (394)
+|++++ |.++ +..+..+..+++|+.|++++|+++|.||.
T Consensus 204 ~L~L~~--n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 204 ELALDT--NQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp EEECCS--SCCS-CCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred EEECCC--Ccee-ecCHhHhcccccccEEEccCCcccccCCc
Confidence 888888 7777 43335567788888888888888887763
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=2e-24 Score=192.19 Aligned_cols=205 Identities=21% Similarity=0.271 Sum_probs=115.4
Q ss_pred CCEEEcCCCCCCccccccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCC
Q 041570 176 LQSLDLSHNNLNRIILSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSG 255 (394)
Q Consensus 176 L~~L~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~ 255 (394)
.+.++++++.++.....-.+++++|++++|.+++. +...+..+++|++|++++|.+. .++...+..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~--~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQ--TLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCCS--CCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCccCCCCCCCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCccC--eeChhhhcCCCCCCEEECCC
Confidence 34444444444432211223455555555555432 2245566666666666666654 34444455666666666666
Q ss_pred CCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCccccee
Q 041570 256 VGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGV 335 (394)
Q Consensus 256 n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 335 (394)
|.+++. .+..+..+++|++|++++|++++..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|.+++
T Consensus 95 n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~- 171 (270)
T 2o6q_A 95 NKLQAL--PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR- 171 (270)
T ss_dssp SCCCCC--CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-
T ss_pred CcCCcC--CHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE-
Confidence 666553 33345556666666666666666655556666666666666666665444445666666666666666663
Q ss_pred echhhccCCCCCcEEEcCCCCcccCCccccccccccCCCcEEeccccccceeEe
Q 041570 336 LDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLSYSILNANCT 389 (394)
Q Consensus 336 ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~l~g~~~ 389 (394)
++...+..+++|++|++++ |.++ +..+..+..+++|+.|++++|.+.+.|+
T Consensus 172 ~~~~~~~~l~~L~~L~L~~--N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDN--NQLK-RVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CCTTTTTTCTTCCEEECCS--SCCS-CCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred eChhHhccCCCcCEEECCC--CcCC-cCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 3332555666666666666 6665 3323445566666666666666666554
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=1.1e-24 Score=195.57 Aligned_cols=203 Identities=18% Similarity=0.104 Sum_probs=142.1
Q ss_pred CCCCEEEcCCCCCCccccccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEc
Q 041570 174 SKLQSLDLSHNNLNRIILSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDL 253 (394)
Q Consensus 174 ~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l 253 (394)
+++++++++++.++...+.-.++++.|++++|.+++..+ ..+..+++|++|++++|.+. .++. ...+++|++|++
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~--~~~~--~~~l~~L~~L~L 84 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSL-ATLMPYTRLTQLNLDRAELT--KLQV--DGTLPVLGTLDL 84 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEG-GGGTTCTTCCEEECTTSCCC--EEEC--CSCCTTCCEEEC
T ss_pred CCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCH-HHhhcCCCCCEEECCCCccC--cccC--CCCCCcCCEEEC
Confidence 444444444444443322233455566666666553333 56777778888888887775 3443 267777888888
Q ss_pred CCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccc
Q 041570 254 SGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVN 333 (394)
Q Consensus 254 ~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 333 (394)
++|.++. +|..+..+++|++|++++|++++..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|.++
T Consensus 85 s~N~l~~---l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 85 SHNQLQS---LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp CSSCCSS---CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCcCCc---CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 8887764 5666677778888888888887777777778888888888888887666666777888888888888887
Q ss_pred eeechhhccCCCCCcEEEcCCCCcccCCccccccccccCCCcEEeccccccceeEe
Q 041570 334 GVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLSYSILNANCT 389 (394)
Q Consensus 334 ~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~l~g~~~ 389 (394)
.+|...+..+++|++|++++ |.++ .+|..+...++|+.+++++|.+.+.|.
T Consensus 162 -~l~~~~~~~l~~L~~L~L~~--N~l~--~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 162 -ELPAGLLNGLENLDTLLLQE--NSLY--TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp -CCCTTTTTTCTTCCEEECCS--SCCC--CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred -ccCHHHhcCcCCCCEEECCC--CcCC--ccChhhcccccCCeEEeCCCCccCcCc
Confidence 55554667778888888888 8777 777777777788888888888877664
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=3.7e-25 Score=197.06 Aligned_cols=227 Identities=19% Similarity=0.201 Sum_probs=148.7
Q ss_pred CCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeeccccccCCCCCCEEEcCCCCCCccc-cccCCCCcEEEccCccc
Q 041570 129 NLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIEVKGSSKLQSLDLSHNNLNRII-LSSLTTLSELYLSGMGF 207 (394)
Q Consensus 129 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~L~~L~l~~~~~ 207 (394)
.+..+++..+.+.+.. .+..+++|+.|++++|.+.....+..+++|++|++++|.+.+.. ...+++|++|++++|.+
T Consensus 20 ~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l 97 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQL 97 (272)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCC
T ss_pred HHHHHHhcCccccccc--ccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCcc
Confidence 4445666666665443 34577889999999988876444667788888888888777642 12666777777777776
Q ss_pred CCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCcc
Q 041570 208 EGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTAT 287 (394)
Q Consensus 208 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 287 (394)
++..+ ..++.+++|++|++++|++. .+++..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++.
T Consensus 98 ~~~~~-~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 98 QSLPN-GVFDKLTNLKELVLVENQLQ--SLPDGVFDKLTNLTYLNLAHNQLQSL--PKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp CCCCT-TTTTTCTTCCEEECTTSCCC--CCCTTTTTTCTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CccCh-hHhcCCcCCCEEECCCCcCC--ccCHHHhccCCCCCEEECCCCccCcc--CHHHhccCccCCEEECCCCCcCcc
Confidence 64333 55666777777777777665 34443566667777777777766654 344456666777777777777666
Q ss_pred chhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCcccccc
Q 041570 288 TTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQII 367 (394)
Q Consensus 288 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~ 367 (394)
.+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+. +++++.++++. |.++ |.+|..
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~--------~~~l~~l~~~~--n~~~-g~ip~~ 241 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT--------CPGIRYLSEWI--NKHS-GVVRNS 241 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC--------TTTTHHHHHHH--HHTG-GGBBCT
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc--------CcHHHHHHHHH--HhCC-CcccCc
Confidence 666666667777777777777665555566677777777777765533 34566666666 6666 666666
Q ss_pred ccccCC
Q 041570 368 GESMAS 373 (394)
Q Consensus 368 ~~~~~~ 373 (394)
++.++.
T Consensus 242 ~~~~~~ 247 (272)
T 3rfs_A 242 AGSVAP 247 (272)
T ss_dssp TSCBCG
T ss_pred ccccCC
Confidence 655443
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=7.5e-25 Score=195.07 Aligned_cols=208 Identities=24% Similarity=0.254 Sum_probs=159.0
Q ss_pred hcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeeccccccCCCCCCEEEcCCCCCCccccc---cCCCCcEE
Q 041570 124 LSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIEVKGSSKLQSLDLSHNNLNRIILS---SLTTLSEL 200 (394)
Q Consensus 124 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~l~~L~~L 200 (394)
+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++...+..+++|++|++++|.+++..+. .+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 345566777777777665 222 4666777777777777766643356667777777777777665543 56778888
Q ss_pred EccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCc
Q 041570 201 YLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLE 280 (394)
Q Consensus 201 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~ 280 (394)
++++|.+++..+ ..++.+++|++|++++|.+. .+++..+..+++|++|++++|.+++. .+..+..+++|++|+++
T Consensus 115 ~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 115 VLVENQLQSLPD-GVFDKLTNLTYLNLAHNQLQ--SLPKGVFDKLTNLTELDLSYNQLQSL--PEGVFDKLTQLKDLRLY 189 (272)
T ss_dssp ECTTSCCCCCCT-TTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEECC
T ss_pred ECCCCcCCccCH-HHhccCCCCCEEECCCCccC--ccCHHHhccCccCCEEECCCCCcCcc--CHHHhcCCccCCEEECC
Confidence 888888775444 66888999999999999887 45555788899999999999999876 55567888999999999
Q ss_pred CCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCC
Q 041570 281 ANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKS 346 (394)
Q Consensus 281 ~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~ 346 (394)
+|++++..+..+..+++|+.|++++|.+.+ .+++|++++++.|.++|.+|. .++.++.
T Consensus 190 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~-~~~~~~~ 247 (272)
T 3rfs_A 190 QNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRN-SAGSVAP 247 (272)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBC-TTSCBCG
T ss_pred CCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccC-cccccCC
Confidence 999998888888999999999999998874 355788999999999999998 5555443
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=9.9e-24 Score=207.41 Aligned_cols=248 Identities=21% Similarity=0.182 Sum_probs=205.4
Q ss_pred CcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhc
Q 041570 71 GRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLAR 150 (394)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~ 150 (394)
.+++.|++++|+++.++. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .
T Consensus 61 ~~L~~L~L~~N~l~~lp~---------~l~~L~~L~Ls~N~l~~-lp~-------~l~~L~~L~Ls~N~l~~-l~~---~ 119 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---------LPPELRTLEVSGNQLTS-LPV-------LPPGLLELSIFSNPLTH-LPA---L 119 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---------CCTTCCEEEECSCCCSC-CCC-------CCTTCCEEEECSCCCCC-CCC---C
T ss_pred CCCcEEEecCCCCCCCCC---------cCCCCCEEEcCCCcCCc-CCC-------CCCCCCEEECcCCcCCC-CCC---C
Confidence 478999999998864332 46899999999999875 332 57899999999999984 554 6
Q ss_pred CCCCCEEEcCCceeeccccccCCCCCCEEEcCCCCCCccccccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCC
Q 041570 151 LSSLISLSLSHNKLEGSIEVKGSSKLQSLDLSHNNLNRIILSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNN 230 (394)
Q Consensus 151 l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n 230 (394)
+++|++|++++|.+++ +|. .+++|++|++++|.+++. |..+++|+.|++++|.+++ ++ ..+++|++|++++|
T Consensus 120 l~~L~~L~L~~N~l~~-lp~-~l~~L~~L~Ls~N~l~~l-~~~~~~L~~L~L~~N~l~~-l~----~~~~~L~~L~Ls~N 191 (622)
T 3g06_A 120 PSGLCKLWIFGNQLTS-LPV-LPPGLQELSVSDNQLASL-PALPSELCKLWAYNNQLTS-LP----MLPSGLQELSVSDN 191 (622)
T ss_dssp CTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSCC-CCCCTTCCEEECCSSCCSC-CC----CCCTTCCEEECCSS
T ss_pred CCCcCEEECCCCCCCc-CCC-CCCCCCEEECcCCcCCCc-CCccCCCCEEECCCCCCCC-Cc----ccCCCCcEEECCCC
Confidence 7899999999999987 443 348999999999999874 4567899999999999984 54 45789999999999
Q ss_pred CCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCCh
Q 041570 231 KGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDI 310 (394)
Q Consensus 231 ~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~ 310 (394)
.+. .++. .+++|+.|++++|.++. +|. .+++|++|++++|.+++. | ..+++|+.|++++|.++
T Consensus 192 ~l~--~l~~----~~~~L~~L~L~~N~l~~---l~~---~~~~L~~L~Ls~N~L~~l-p---~~l~~L~~L~Ls~N~L~- 254 (622)
T 3g06_A 192 QLA--SLPT----LPSELYKLWAYNNRLTS---LPA---LPSGLKELIVSGNRLTSL-P---VLPSELKELMVSGNRLT- 254 (622)
T ss_dssp CCS--CCCC----CCTTCCEEECCSSCCSS---CCC---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCS-
T ss_pred CCC--CCCC----ccchhhEEECcCCcccc---cCC---CCCCCCEEEccCCccCcC-C---CCCCcCcEEECCCCCCC-
Confidence 987 3443 34789999999999986 453 347899999999999874 4 45689999999999998
Q ss_pred hhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccccccccccC
Q 041570 311 NLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMA 372 (394)
Q Consensus 311 ~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~ 372 (394)
.+|. .+++|++|++++|.++ .+|. .+.++++|+.|++++ |.++ +.+|..+..++
T Consensus 255 ~lp~---~~~~L~~L~Ls~N~L~-~lp~-~l~~l~~L~~L~L~~--N~l~-~~~~~~l~~L~ 308 (622)
T 3g06_A 255 SLPM---LPSGLLSLSVYRNQLT-RLPE-SLIHLSSETTVNLEG--NPLS-ERTLQALREIT 308 (622)
T ss_dssp CCCC---CCTTCCEEECCSSCCC-SCCG-GGGGSCTTCEEECCS--CCCC-HHHHHHHHHHH
T ss_pred cCCc---ccccCcEEeCCCCCCC-cCCH-HHhhccccCEEEecC--CCCC-CcCHHHHHhcc
Confidence 4665 6789999999999999 8888 789999999999999 9999 88887665443
No 75
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.92 E-value=1.1e-25 Score=210.94 Aligned_cols=240 Identities=21% Similarity=0.259 Sum_probs=131.6
Q ss_pred chhhhhcCCCCCcEEEcccccCCccchH----hhhcCCCCCEEEcCCce---eecccc---------ccCCCCCCEEEcC
Q 041570 119 EGLEMLSRLSNLKFLDLRMNLFKNSISS----SLARLSSLISLSLSHNK---LEGSIE---------VKGSSKLQSLDLS 182 (394)
Q Consensus 119 ~~~~~l~~l~~L~~L~L~~n~~~~~~p~----~l~~l~~L~~L~l~~n~---l~~~~~---------~~~~~~L~~L~l~ 182 (394)
.+...+..+++|++|++++|.+++..+. .+..+++|++|++++|. +.+.+| +..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 3344567778888888888888765443 35578888888888753 333333 2456777777777
Q ss_pred CCCCCcc----ccc---cCCCCcEEEccCcccCCccC---hhhhcCC---------CCCCEEECCCCCCCCCcccC--cC
Q 041570 183 HNNLNRI----ILS---SLTTLSELYLSGMGFEGTFD---VQEFDSL---------SNLEELYLSNNKGINNFVVP--QD 241 (394)
Q Consensus 183 ~n~l~~~----~~~---~l~~L~~L~l~~~~~~~~~~---~~~~~~l---------~~L~~L~l~~n~~~~~~~~~--~~ 241 (394)
+|.+++. ++. .+++|++|++++|.+++..+ ...+..+ ++|++|++++|++..+.++. ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 7777662 222 55666666666666542211 0112222 56666666666554222221 13
Q ss_pred CCCCCCcCEEEcCCCCCC--CChh-hhhhcCCCCCCCEEeCcCCCCC----ccchhhcCCCCCCCEEEcCCCcCChh---
Q 041570 242 YRGLSKLKRLDLSGVGIR--DGSE-LLRSMGSFPSLKTLFLEANNFT----ATTTQELHNFTNLEFLNLRHSSLDIN--- 311 (394)
Q Consensus 242 ~~~l~~L~~L~l~~n~~~--~~~~-~~~~l~~~~~L~~L~l~~n~~~----~~~~~~l~~~~~L~~L~l~~n~l~~~--- 311 (394)
+..+++|++|++++|.++ |... ++..+..+++|++|+|++|.++ ..+|..+..+++|+.|++++|.+++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 444556666666666554 2111 1224455556666666666554 34455555555666666666665543
Q ss_pred -hhhchhc--cCCCCeEecCCcccce----eechhhccCCCCCcEEEcCCCCcccC
Q 041570 312 -LLKTIAS--FTSLKNLSMVSCEVNG----VLDGQGFLNFKSLERLDMGGARNALN 360 (394)
Q Consensus 312 -~~~~l~~--~~~L~~L~l~~n~l~~----~ip~~~~~~~~~L~~L~l~~~~n~l~ 360 (394)
++..+.. +++|++|++++|.+++ .+|.....++++|++|++++ |.++
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~--N~l~ 316 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG--NRFS 316 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT--SBSC
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC--CcCC
Confidence 3344422 5556666666665554 24442224455566666655 5555
No 76
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=2.4e-25 Score=208.53 Aligned_cols=259 Identities=19% Similarity=0.197 Sum_probs=190.1
Q ss_pred CCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccc---cCCccchHhh-------hcCCCCCEEEcCCceee
Q 041570 96 FTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMN---LFKNSISSSL-------ARLSSLISLSLSHNKLE 165 (394)
Q Consensus 96 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n---~~~~~~p~~l-------~~l~~L~~L~l~~n~l~ 165 (394)
+..+++|++|++++|.+++..+..+...+..+++|++|+|++| .+.+.+|..+ ..+++|++|++++|.++
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 4667889999999998887666555556788899999999885 4455666554 67899999999999887
Q ss_pred c----ccc--ccCCCCCCEEEcCCCCCCccccc-------cC---------CCCcEEEccCcccCC-ccCh--hhhcCCC
Q 041570 166 G----SIE--VKGSSKLQSLDLSHNNLNRIILS-------SL---------TTLSELYLSGMGFEG-TFDV--QEFDSLS 220 (394)
Q Consensus 166 ~----~~~--~~~~~~L~~L~l~~n~l~~~~~~-------~l---------~~L~~L~l~~~~~~~-~~~~--~~~~~l~ 220 (394)
+ .++ +..+++|++|++++|.+++..+. .+ ++|++|++++|.++. .++. ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 7 233 56778999999999988755332 22 889999999998873 3321 3566788
Q ss_pred CCCEEECCCCCCCCCc---ccCcCCCCCCCcCEEEcCCCCCCC--ChhhhhhcCCCCCCCEEeCcCCCCCcc----chhh
Q 041570 221 NLEELYLSNNKGINNF---VVPQDYRGLSKLKRLDLSGVGIRD--GSELLRSMGSFPSLKTLFLEANNFTAT----TTQE 291 (394)
Q Consensus 221 ~L~~L~l~~n~~~~~~---~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~l~~~~~L~~L~l~~n~~~~~----~~~~ 291 (394)
+|++|++++|.+.... +.+..+..+++|++|++++|.++. ...+|..+..+++|++|++++|.+++. ++..
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 267 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence 9999999999876211 222267788899999999998851 122777888888999999999998866 4566
Q ss_pred c--CCCCCCCEEEcCCCcCCh----hhhhch-hccCCCCeEecCCcccceeec--hhhccCCCCCcEEEcCC
Q 041570 292 L--HNFTNLEFLNLRHSSLDI----NLLKTI-ASFTSLKNLSMVSCEVNGVLD--GQGFLNFKSLERLDMGG 354 (394)
Q Consensus 292 l--~~~~~L~~L~l~~n~l~~----~~~~~l-~~~~~L~~L~l~~n~l~~~ip--~~~~~~~~~L~~L~l~~ 354 (394)
+ +.+++|+.|++++|.+++ .+|..+ .++++|++|++++|.+++..+ ......++.++.+++..
T Consensus 268 l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred HhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 6 338899999999999987 477777 668999999999999887664 21222334444444444
No 77
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=1.6e-25 Score=205.71 Aligned_cols=234 Identities=21% Similarity=0.235 Sum_probs=135.2
Q ss_pred CCccceeEecCCCCcEEEEecCCCCCCCCCCCccccccCCCC--CCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEc
Q 041570 58 FCQWESVECSNTTGRVIGLDLSDTRNEDLGEGYLNAFLFTPF--QQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDL 135 (394)
Q Consensus 58 ~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~l~~~~~~~l--~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L 135 (394)
|..|.++.|+ ...++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++
T Consensus 36 c~~W~~~~~~--~~~~~~l~l~~~~~~--------~~~~~~~~~~~l~~L~l~~n~l~~~~~~-----~~~~~~L~~L~L 100 (336)
T 2ast_B 36 CKRWYRLASD--ESLWQTLDLTGKNLH--------PDVTGRLLSQGVIAFRCPRSFMDQPLAE-----HFSPFRVQHMDL 100 (336)
T ss_dssp CHHHHHHHTC--STTSSEEECTTCBCC--------HHHHHHHHHTTCSEEECTTCEECSCCCS-----CCCCBCCCEEEC
T ss_pred HHHHHHHhcC--chhheeeccccccCC--------HHHHHhhhhccceEEEcCCccccccchh-----hccCCCCCEEEc
Confidence 4468888774 334678888877653 1223444 7889999999988877665 567888999999
Q ss_pred ccccCCcc-chHhhhcCCCCCEEEcCCceeecccc--ccCCCCCCEEEcCCC-CCCccccccCCCCcEEEccCcccCCcc
Q 041570 136 RMNLFKNS-ISSSLARLSSLISLSLSHNKLEGSIE--VKGSSKLQSLDLSHN-NLNRIILSSLTTLSELYLSGMGFEGTF 211 (394)
Q Consensus 136 ~~n~~~~~-~p~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n-~l~~~~~~~l~~L~~L~l~~~~~~~~~ 211 (394)
++|.+++. ++..+.++++|++|++++|.+++..+ +..+++|++|++++| .+++.. +
T Consensus 101 ~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~--------------------l 160 (336)
T 2ast_B 101 SNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA--------------------L 160 (336)
T ss_dssp TTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHH--------------------H
T ss_pred cCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHH--------------------H
Confidence 99888765 77788888899999998888876554 555677777777777 455421 1
Q ss_pred ChhhhcCCCCCCEEECCCC-CCCCCc-ccCcCCCCCC-CcCEEEcCCC--CCCCChhhhhhcCCCCCCCEEeCcCCC-CC
Q 041570 212 DVQEFDSLSNLEELYLSNN-KGINNF-VVPQDYRGLS-KLKRLDLSGV--GIRDGSELLRSMGSFPSLKTLFLEANN-FT 285 (394)
Q Consensus 212 ~~~~~~~l~~L~~L~l~~n-~~~~~~-~~~~~~~~l~-~L~~L~l~~n--~~~~~~~~~~~l~~~~~L~~L~l~~n~-~~ 285 (394)
+ ..+..+++|++|++++| .+. +. ++. .+..++ +|++|++++| .+++ ..++..+..+++|++|++++|. ++
T Consensus 161 ~-~~~~~~~~L~~L~l~~~~~l~-~~~~~~-~~~~l~~~L~~L~l~~~~~~~~~-~~l~~~~~~~~~L~~L~l~~~~~l~ 236 (336)
T 2ast_B 161 Q-TLLSSCSRLDELNLSWCFDFT-EKHVQV-AVAHVSETITQLNLSGYRKNLQK-SDLSTLVRRCPNLVHLDLSDSVMLK 236 (336)
T ss_dssp H-HHHHHCTTCCEEECCCCTTCC-HHHHHH-HHHHSCTTCCEEECCSCGGGSCH-HHHHHHHHHCTTCSEEECTTCTTCC
T ss_pred H-HHHhcCCCCCEEcCCCCCCcC-hHHHHH-HHHhcccCCCEEEeCCCcccCCH-HHHHHHHhhCCCCCEEeCCCCCcCC
Confidence 1 22334444444444444 333 11 111 233444 4444444444 2221 1134444445555555555554 44
Q ss_pred ccchhhcCCCCCCCEEEcCCC-cCChhhhhchhccCCCCeEecCCc
Q 041570 286 ATTTQELHNFTNLEFLNLRHS-SLDINLLKTIASFTSLKNLSMVSC 330 (394)
Q Consensus 286 ~~~~~~l~~~~~L~~L~l~~n-~l~~~~~~~l~~~~~L~~L~l~~n 330 (394)
+..+..+..+++|+.|++++| .+.......+.++++|++|++++|
T Consensus 237 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 237 NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 444444555555555555555 222222223444555555555555
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=1.2e-24 Score=199.83 Aligned_cols=250 Identities=20% Similarity=0.241 Sum_probs=192.9
Q ss_pred CCCcEEEcccccCCccchHhhhcC--CCCCEEEcCCceeecccc-ccCCCCCCEEEcCCCCCCcc-ccc---cCCCCcEE
Q 041570 128 SNLKFLDLRMNLFKNSISSSLARL--SSLISLSLSHNKLEGSIE-VKGSSKLQSLDLSHNNLNRI-ILS---SLTTLSEL 200 (394)
Q Consensus 128 ~~L~~L~L~~n~~~~~~p~~l~~l--~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~-~~~---~l~~L~~L 200 (394)
..++.++++++.+. +..+..+ ++++.|++++|.+.+..+ ...+++|++|++++|.+++. .+. .+++|++|
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 34778888887765 3455555 778888888888877655 55668888888888887765 333 78889999
Q ss_pred EccCcccCCccChhhhcCCCCCCEEECCCC-CCCCCc-ccCcCCCCCCCcCEEEcCCC-CCCCChhhhhhcCCCC-CCCE
Q 041570 201 YLSGMGFEGTFDVQEFDSLSNLEELYLSNN-KGINNF-VVPQDYRGLSKLKRLDLSGV-GIRDGSELLRSMGSFP-SLKT 276 (394)
Q Consensus 201 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~-~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~l~~~~-~L~~ 276 (394)
++++|.+++..+ ..++.+++|++|++++| .+. +. ++ ..+..+++|++|++++| .+++. .++..+..++ +|++
T Consensus 124 ~L~~~~l~~~~~-~~l~~~~~L~~L~L~~~~~l~-~~~l~-~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~l~~~L~~ 199 (336)
T 2ast_B 124 SLEGLRLSDPIV-NTLAKNSNLVRLNLSGCSGFS-EFALQ-TLLSSCSRLDELNLSWCFDFTEK-HVQVAVAHVSETITQ 199 (336)
T ss_dssp ECTTCBCCHHHH-HHHTTCTTCSEEECTTCBSCC-HHHHH-HHHHHCTTCCEEECCCCTTCCHH-HHHHHHHHSCTTCCE
T ss_pred eCcCcccCHHHH-HHHhcCCCCCEEECCCCCCCC-HHHHH-HHHhcCCCCCEEcCCCCCCcChH-HHHHHHHhcccCCCE
Confidence 999998876665 67888999999999999 565 32 33 35788999999999999 88753 1566778889 9999
Q ss_pred EeCcCC--CCC-ccchhhcCCCCCCCEEEcCCCc-CChhhhhchhccCCCCeEecCCcc-cceeechhhccCCCCCcEEE
Q 041570 277 LFLEAN--NFT-ATTTQELHNFTNLEFLNLRHSS-LDINLLKTIASFTSLKNLSMVSCE-VNGVLDGQGFLNFKSLERLD 351 (394)
Q Consensus 277 L~l~~n--~~~-~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~L~~L~l~~n~-l~~~ip~~~~~~~~~L~~L~ 351 (394)
|++++| .++ +.++..+..+++|+.|++++|. +++..+..+.++++|++|++++|. +...... .+..+++|++|+
T Consensus 200 L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~l~~~~~L~~L~ 278 (336)
T 2ast_B 200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL-ELGEIPTLKTLQ 278 (336)
T ss_dssp EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGG-GGGGCTTCCEEE
T ss_pred EEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHH-HHhcCCCCCEEe
Confidence 999999 566 5567778889999999999999 788888899999999999999995 3322222 577899999999
Q ss_pred cCCCCcccCCccccccccccCCCcEEeccccccceeEeec
Q 041570 352 MGGARNALNASFLQIIGESMASLKHLSLSYSILNANCTIL 391 (394)
Q Consensus 352 l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~l~g~~~~~ 391 (394)
+++ + +++..+.... .+++.|++++|++++..|..
T Consensus 279 l~~--~-i~~~~~~~l~---~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 279 VFG--I-VPDGTLQLLK---EALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp CTT--S-SCTTCHHHHH---HHSTTSEESCCCSCCTTCSS
T ss_pred ccC--c-cCHHHHHHHH---hhCcceEEecccCccccCCc
Confidence 999 6 5523333222 23566668999999988754
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.4e-23 Score=187.22 Aligned_cols=204 Identities=21% Similarity=0.227 Sum_probs=127.3
Q ss_pred CCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeecccc--ccCCCCCCEEEcCCCCCCccccccCCCCcEEEccCc
Q 041570 128 SNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIE--VKGSSKLQSLDLSHNNLNRIILSSLTTLSELYLSGM 205 (394)
Q Consensus 128 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~~ 205 (394)
++|++|++++|.+++..+..+.++++|++|++++|.+++..+ +..+++|++|++++|.+++..+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------- 93 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-------------- 93 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT--------------
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh--------------
Confidence 468888888888876656577788888888888887776443 4455666666666665554332
Q ss_pred ccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCC
Q 041570 206 GFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFT 285 (394)
Q Consensus 206 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 285 (394)
..+..+++|++|++++|.+. .++...+..+++|++|++++|.+++.. +|..+..+++|++|++++|+++
T Consensus 94 --------~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~-l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 94 --------GAFSGLSSLQKLVAVETNLA--SLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp --------TTTTTCTTCCEEECTTSCCC--CSTTCCCTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCCEEECCSSCCC
T ss_pred --------hhhcCCccccEEECCCCCcc--ccCchhcccCCCCCEEECcCCccceec-CchhhccCCCCCEEECCCCCCC
Confidence 44556666666666666655 233334666666666666666665421 3556666666777777777666
Q ss_pred ccchhhcCCCCCCC----EEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccC
Q 041570 286 ATTTQELHNFTNLE----FLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALN 360 (394)
Q Consensus 286 ~~~~~~l~~~~~L~----~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~ 360 (394)
+..+..+..+++|+ .|++++|.+++..+..+ ...+|++|++++|.++ .+|...+..+++|++|++++ |.++
T Consensus 163 ~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~--N~~~ 237 (276)
T 2z62_A 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHT--NPWD 237 (276)
T ss_dssp EECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCS--SCBC
T ss_pred cCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCcee-ecCHhHhcccccccEEEccC--Cccc
Confidence 65555555444444 66777777664333333 3346777777777766 33443556667777777777 6666
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=1e-22 Score=182.71 Aligned_cols=201 Identities=22% Similarity=0.225 Sum_probs=144.3
Q ss_pred CCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeeccccccCCCC
Q 041570 96 FTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIEVKGSSK 175 (394)
Q Consensus 96 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 175 (394)
+..++++++++++++.++..++. + .+.+++|++++|.+++..+..+.++++|++|++++|.+++..+...+++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~-----~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~ 78 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPD-----L--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV 78 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSC-----C--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTT
T ss_pred ccccCCccEEECCCCCCCcCCCC-----C--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCc
Confidence 45678889999999888754332 2 3688999999999987778888999999999999999887555666788
Q ss_pred CCEEEcCCCCCCcccc--ccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEc
Q 041570 176 LQSLDLSHNNLNRIIL--SSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDL 253 (394)
Q Consensus 176 L~~L~l~~n~l~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l 253 (394)
|++|++++|+++.... ..+++|++|++++|.+++..+ ..+..+++|++|++++|++. .+++..+..+++|++|++
T Consensus 79 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNELK--TLPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp CCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCS-STTTTCTTCCEEECTTSCCC--CCCTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCH-HHHcCCCCCCEEECCCCCCC--ccChhhcccccCCCEEEC
Confidence 8888888888774322 256677777777777764333 56777777777777777765 445546677777777777
Q ss_pred CCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCC
Q 041570 254 SGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLD 309 (394)
Q Consensus 254 ~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 309 (394)
++|++++. .+..+..+++|++|++++|+++ .+|..+....+|+.+++++|.+.
T Consensus 156 ~~N~l~~l--~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 156 ANNNLTEL--PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTSCCSCC--CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCCcCCcc--CHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 77777654 2334566777777777777776 44555556667777777777765
No 81
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.91 E-value=1.9e-25 Score=220.83 Aligned_cols=208 Identities=14% Similarity=0.027 Sum_probs=128.6
Q ss_pred CCCCEEEcCCCCCCcccc----ccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCC-----------CCCCCCccc
Q 041570 174 SKLQSLDLSHNNLNRIIL----SSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSN-----------NKGINNFVV 238 (394)
Q Consensus 174 ~~L~~L~l~~n~l~~~~~----~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-----------n~~~~~~~~ 238 (394)
++|++|++++|.+++..+ ..+++|++|++++ .+...........+++|++|++++ +.+. +...
T Consensus 293 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~-~~~~ 370 (592)
T 3ogk_B 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS-QRGL 370 (592)
T ss_dssp GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCC-HHHH
T ss_pred CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccC-HHHH
Confidence 455555555555444322 2455555555552 222111112334566677777662 2332 1111
Q ss_pred CcCCCCCCCcCEEEcCCCCCCCChhhhhhcCC-CCCCCEEeCc----CCCCCcc-----chhhcCCCCCCCEEEcCCCc-
Q 041570 239 PQDYRGLSKLKRLDLSGVGIRDGSELLRSMGS-FPSLKTLFLE----ANNFTAT-----TTQELHNFTNLEFLNLRHSS- 307 (394)
Q Consensus 239 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~-~~~L~~L~l~----~n~~~~~-----~~~~l~~~~~L~~L~l~~n~- 307 (394)
......+++|++|+++.+.+++. .+..+.. +++|++|+++ .|.+++. ++..+..+++|+.|++++|.
T Consensus 371 ~~l~~~~~~L~~L~l~~~~l~~~--~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~ 448 (592)
T 3ogk_B 371 IALAQGCQELEYMAVYVSDITNE--SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQG 448 (592)
T ss_dssp HHHHHHCTTCSEEEEEESCCCHH--HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGG
T ss_pred HHHHhhCccCeEEEeecCCccHH--HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCC
Confidence 11234467777777777777654 4444443 6778888885 5566653 33445667888888887543
Q ss_pred -CChhhhhchhc-cCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccccccccccCCCcEEeccccccc
Q 041570 308 -LDINLLKTIAS-FTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLSYSILN 385 (394)
Q Consensus 308 -l~~~~~~~l~~-~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~l~ 385 (394)
+++..+..+.. +++|++|++++|.+++......+..+++|++|++++ |.+++..++.....+++|+.|++++|+++
T Consensus 449 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~--n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 449 GLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRG--CCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp GCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEES--CCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred CccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccC--CCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 66666555543 788999999999887633332567889999999999 66773446666678899999999999887
Q ss_pred ee
Q 041570 386 AN 387 (394)
Q Consensus 386 g~ 387 (394)
+.
T Consensus 527 ~~ 528 (592)
T 3ogk_B 527 MT 528 (592)
T ss_dssp TT
T ss_pred HH
Confidence 64
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=7.9e-25 Score=203.13 Aligned_cols=248 Identities=23% Similarity=0.201 Sum_probs=165.0
Q ss_pred EEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccch----HhhhcCC-CCCEEEcCCceeecccc--cc----C
Q 041570 104 SLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSIS----SSLARLS-SLISLSLSHNKLEGSIE--VK----G 172 (394)
Q Consensus 104 ~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p----~~l~~l~-~L~~L~l~~n~l~~~~~--~~----~ 172 (394)
...++.|.+++.+|.. +...++|++|++++|.+++..+ ..+.+++ +|++|++++|.+++..+ +. .
T Consensus 2 ~~~ls~n~~~~~~~~~----~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 77 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEF----TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77 (362)
T ss_dssp EEECCCCTTCCHHHHH----HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred ccccccccchHHHHHH----HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhc
Confidence 4578888888877753 5556669999999999886666 6677888 89999999998877443 22 2
Q ss_pred C-CCCCEEEcCCCCCCccccc-------cC-CCCcEEEccCcccCCccChhhh----cC-CCCCCEEECCCCCCCCCccc
Q 041570 173 S-SKLQSLDLSHNNLNRIILS-------SL-TTLSELYLSGMGFEGTFDVQEF----DS-LSNLEELYLSNNKGINNFVV 238 (394)
Q Consensus 173 ~-~~L~~L~l~~n~l~~~~~~-------~l-~~L~~L~l~~~~~~~~~~~~~~----~~-l~~L~~L~l~~n~~~~~~~~ 238 (394)
. ++|++|++++|.+++..+. .+ ++|++|++++|.+++..+ ..+ .. .++|++|++++|.+. ....
T Consensus 78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~~~l~~~~~~L~~L~Ls~N~l~-~~~~ 155 (362)
T 3goz_A 78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS-SEFKQAFSNLPASITSLNLRGNDLG-IKSS 155 (362)
T ss_dssp SCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH-HHHHHHHTTSCTTCCEEECTTSCGG-GSCH
T ss_pred cCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH-HHHHHHHHhCCCceeEEEccCCcCC-HHHH
Confidence 2 7888999998888776543 33 688888888888764433 332 33 357888888888765 2111
Q ss_pred C---cCCCCCC-CcCEEEcCCCCCCCCh--hhhhhcCCC-CCCCEEeCcCCCCCcc----chhhcCC-CCCCCEEEcCCC
Q 041570 239 P---QDYRGLS-KLKRLDLSGVGIRDGS--ELLRSMGSF-PSLKTLFLEANNFTAT----TTQELHN-FTNLEFLNLRHS 306 (394)
Q Consensus 239 ~---~~~~~l~-~L~~L~l~~n~~~~~~--~~~~~l~~~-~~L~~L~l~~n~~~~~----~~~~l~~-~~~L~~L~l~~n 306 (394)
. ..+...+ +|++|++++|.+++.. .+...+..+ ++|++|++++|.+++. ++..+.. .++|+.|++++|
T Consensus 156 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 156 DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred HHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC
Confidence 1 1233443 7888888888776541 122334444 4788888888877653 3444444 357888888888
Q ss_pred cCChhhh----hchhccCCCCeEecCCccccee-------echhhccCCCCCcEEEcCCCCcccC
Q 041570 307 SLDINLL----KTIASFTSLKNLSMVSCEVNGV-------LDGQGFLNFKSLERLDMGGARNALN 360 (394)
Q Consensus 307 ~l~~~~~----~~l~~~~~L~~L~l~~n~l~~~-------ip~~~~~~~~~L~~L~l~~~~n~l~ 360 (394)
.+++..+ ..+..+++|++|++++|.+.+. ++. .+..+++|++||+++ |.+.
T Consensus 236 ~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~-~~~~l~~L~~LdL~~--N~l~ 297 (362)
T 3goz_A 236 CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGA-AFPNIQKIILVDKNG--KEIH 297 (362)
T ss_dssp CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHT-TSTTCCEEEEECTTS--CBCC
T ss_pred CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHH-HhccCCceEEEecCC--CcCC
Confidence 8775433 3345667788888888874421 222 455667778888888 7776
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=3e-24 Score=194.90 Aligned_cols=230 Identities=18% Similarity=0.174 Sum_probs=138.1
Q ss_pred CCCcEEEcccccCCccchH---hhhcCCCCCEEEcCCceeecccc--c--cCCCCCCEEEcCCCCCCccccccCCCCcEE
Q 041570 128 SNLKFLDLRMNLFKNSISS---SLARLSSLISLSLSHNKLEGSIE--V--KGSSKLQSLDLSHNNLNRIILSSLTTLSEL 200 (394)
Q Consensus 128 ~~L~~L~L~~n~~~~~~p~---~l~~l~~L~~L~l~~n~l~~~~~--~--~~~~~L~~L~l~~n~l~~~~~~~l~~L~~L 200 (394)
..++.+.+.++.++..... .+..+++|++|++++|.+++..| + ..+++|++|++++|.+++..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~-------- 135 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW-------- 135 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS--------
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh--------
Confidence 4567777777766532111 12235678888888888887666 2 4456666666666666543221
Q ss_pred EccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhh--cCCCCCCCEEe
Q 041570 201 YLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRS--MGSFPSLKTLF 278 (394)
Q Consensus 201 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--l~~~~~L~~L~ 278 (394)
++...+..+++|++|++++|.+. .+++..+..+++|++|++++|.+.+...++.. +..+++|++|+
T Consensus 136 ----------~~~~~~~~~~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~ 203 (310)
T 4glp_A 136 ----------LAELQQWLKPGLKVLSIAQAHSP--AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLA 203 (310)
T ss_dssp ----------HHHHHTTBCSCCCEEEEECCSSC--CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCB
T ss_pred ----------hHHHHhhhccCCCEEEeeCCCcc--hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEE
Confidence 11122345666666666666664 33333566666666666666665542212212 24566677777
Q ss_pred CcCCCCCccch--h-hcCCCCCCCEEEcCCCcCChhhhhchhcc---CCCCeEecCCcccceeechhhccCCCCCcEEEc
Q 041570 279 LEANNFTATTT--Q-ELHNFTNLEFLNLRHSSLDINLLKTIASF---TSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDM 352 (394)
Q Consensus 279 l~~n~~~~~~~--~-~l~~~~~L~~L~l~~n~l~~~~~~~l~~~---~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l 352 (394)
+++|+++...+ . .+..+++|++|++++|.+++..|..+..+ ++|++|++++|.++ .+|. .+. ++|++|++
T Consensus 204 Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~-~~~--~~L~~L~L 279 (310)
T 4glp_A 204 LRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPK-GLP--AKLRVLDL 279 (310)
T ss_dssp CCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCS-CCC--SCCSCEEC
T ss_pred CCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhh-hhc--CCCCEEEC
Confidence 77776653221 1 23556677777777777776656555554 57777777777777 6666 332 67777777
Q ss_pred CCCCcccCCccccccccccCCCcEEeccccccce
Q 041570 353 GGARNALNASFLQIIGESMASLKHLSLSYSILNA 386 (394)
Q Consensus 353 ~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~l~g 386 (394)
++ |.++ .+|. +..+++|+.|++++|+++.
T Consensus 280 s~--N~l~--~~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 280 SS--NRLN--RAPQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CS--CCCC--SCCC-TTSCCCCSCEECSSTTTSC
T ss_pred CC--CcCC--CCch-hhhCCCccEEECcCCCCCC
Confidence 77 7777 3343 4566777777777777764
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=5.1e-22 Score=179.87 Aligned_cols=193 Identities=22% Similarity=0.348 Sum_probs=105.3
Q ss_pred CCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeeccccccCCCCC
Q 041570 97 TPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIEVKGSSKL 176 (394)
Q Consensus 97 ~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L 176 (394)
..+++|++|++++|.++.. +. +..+++|++|++++|.+.+. +. +.++++|++|++++|.+++...+..+++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~l-~~-----~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L 109 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTI-EG-----VQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNVSAIAGLQSI 109 (308)
T ss_dssp HHHHTCCEEECTTSCCCCC-TT-----GGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCCGGGTTCTTC
T ss_pred HHcCCcCEEEeeCCCccCc-hh-----hhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCchhhcCCCCC
Confidence 3456666666666665532 22 55566666666666666533 22 56666666666666666553334444555
Q ss_pred CEEEcCCCCCCccccccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCC
Q 041570 177 QSLDLSHNNLNRIILSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGV 256 (394)
Q Consensus 177 ~~L~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n 256 (394)
++|++++|++++. + .+..+++|++|++++|.+. .++. +..+++|++|++++|
T Consensus 110 ~~L~l~~n~l~~~----------------------~--~l~~l~~L~~L~l~~n~l~--~~~~--l~~l~~L~~L~l~~n 161 (308)
T 1h6u_A 110 KTLDLTSTQITDV----------------------T--PLAGLSNLQVLYLDLNQIT--NISP--LAGLTNLQYLSIGNA 161 (308)
T ss_dssp CEEECTTSCCCCC----------------------G--GGTTCTTCCEEECCSSCCC--CCGG--GGGCTTCCEEECCSS
T ss_pred CEEECCCCCCCCc----------------------h--hhcCCCCCCEEECCCCccC--cCcc--ccCCCCccEEEccCC
Confidence 5555555544432 1 2455555566666555554 2221 455555666666666
Q ss_pred CCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccc
Q 041570 257 GIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVN 333 (394)
Q Consensus 257 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 333 (394)
.+++. +. +..+++|++|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|.++
T Consensus 162 ~l~~~---~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 162 QVSDL---TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCCC---GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred cCCCC---hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 55542 22 5555566666666666554433 4555566666666666654332 455566666666666555
No 85
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=9.6e-24 Score=208.69 Aligned_cols=285 Identities=13% Similarity=0.074 Sum_probs=159.7
Q ss_pred CCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCC----ccchHhhhcCCCCCEEEcCCceeecccc-ccC
Q 041570 98 PFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFK----NSISSSLARLSSLISLSLSHNKLEGSIE-VKG 172 (394)
Q Consensus 98 ~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~----~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~ 172 (394)
.+++|++|++++|.+++.....+...+..+++|++|++++|.++ +.++..+.++++|++|++++|.+.+... +..
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 44555566665555544322111122344555555555555554 2333444455566666666555444111 223
Q ss_pred CCCCCEEEcCCCCC--------------------------Ccccc---ccCCCCcEEEccCcccCCccChhhhcCCCCCC
Q 041570 173 SSKLQSLDLSHNNL--------------------------NRIIL---SSLTTLSELYLSGMGFEGTFDVQEFDSLSNLE 223 (394)
Q Consensus 173 ~~~L~~L~l~~n~l--------------------------~~~~~---~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 223 (394)
+++|++|+++.... .+.++ ..+++|++|++++|.+++......+..+++|+
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 33444444432110 00111 13445555555555543322222345555566
Q ss_pred EEECCCCCCCCCcccCcCCCCCCCcCEEEcCC-----------CCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhc
Q 041570 224 ELYLSNNKGINNFVVPQDYRGLSKLKRLDLSG-----------VGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQEL 292 (394)
Q Consensus 224 ~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~-----------n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l 292 (394)
+|++. +.+..+.++ .....+++|++|++++ +.+++. .++.....+++|++|+++.+.+++..+..+
T Consensus 322 ~L~L~-~~~~~~~l~-~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l 398 (592)
T 3ogk_B 322 VLETR-NVIGDRGLE-VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR-GLIALAQGCQELEYMAVYVSDITNESLESI 398 (592)
T ss_dssp EEEEE-GGGHHHHHH-HHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH-HHHHHHHHCTTCSEEEEEESCCCHHHHHHH
T ss_pred EEecc-CccCHHHHH-HHHHhCCCCCEEEeecCccccccccccCccCHH-HHHHHHhhCccCeEEEeecCCccHHHHHHH
Confidence 66555 222211111 1234566777777773 344432 133334456778888887777777666666
Q ss_pred CC-CCCCCEEEcC----CCcCCh-----hhhhchhccCCCCeEecCCcc--cceeechhhccCCCCCcEEEcCCCCcccC
Q 041570 293 HN-FTNLEFLNLR----HSSLDI-----NLLKTIASFTSLKNLSMVSCE--VNGVLDGQGFLNFKSLERLDMGGARNALN 360 (394)
Q Consensus 293 ~~-~~~L~~L~l~----~n~l~~-----~~~~~l~~~~~L~~L~l~~n~--l~~~ip~~~~~~~~~L~~L~l~~~~n~l~ 360 (394)
.. +++|+.|+++ .|.+++ .++..+.++++|++|+++.|. +++..+......+++|++|++++ |.++
T Consensus 399 ~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~--n~l~ 476 (592)
T 3ogk_B 399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGY--VGES 476 (592)
T ss_dssp HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECS--CCSS
T ss_pred HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccC--CCCC
Confidence 55 7788888885 566765 255556778888888887543 55555543445588999999999 8887
Q ss_pred CccccccccccCCCcEEecccccccee
Q 041570 361 ASFLQIIGESMASLKHLSLSYSILNAN 387 (394)
Q Consensus 361 ~g~l~~~~~~~~~L~~L~l~~n~l~g~ 387 (394)
+..++..+..+++|++|++++|++++.
T Consensus 477 ~~~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 477 DEGLMEFSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp HHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred HHHHHHHHhcCcccCeeeccCCCCcHH
Confidence 335677778899999999999998654
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=1.8e-23 Score=193.90 Aligned_cols=257 Identities=18% Similarity=0.124 Sum_probs=191.5
Q ss_pred EecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCC-CCcEEEcccccCCccchHhhhcC---
Q 041570 76 LDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLS-NLKFLDLRMNLFKNSISSSLARL--- 151 (394)
Q Consensus 76 l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~-~L~~L~L~~n~~~~~~p~~l~~l--- 151 (394)
.+++.++++.. .+..+...++|++|++++|.+++..+......+..++ +|++|++++|.+++..+..+..+
T Consensus 3 ~~ls~n~~~~~-----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 77 (362)
T 3goz_A 3 YKLTLHPGSNP-----VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77 (362)
T ss_dssp EECCCCTTCCH-----HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred cccccccchHH-----HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhc
Confidence 45666665322 1223344566999999999998877766667788888 89999999999988777777764
Q ss_pred --CCCCEEEcCCceeecccc------ccCC-CCCCEEEcCCCCCCccccc-------c-CCCCcEEEccCcccCCccC--
Q 041570 152 --SSLISLSLSHNKLEGSIE------VKGS-SKLQSLDLSHNNLNRIILS-------S-LTTLSELYLSGMGFEGTFD-- 212 (394)
Q Consensus 152 --~~L~~L~l~~n~l~~~~~------~~~~-~~L~~L~l~~n~l~~~~~~-------~-l~~L~~L~l~~~~~~~~~~-- 212 (394)
++|++|++++|.+++..+ +..+ ++|++|++++|++++..+. . .++|++|++++|.+++...
T Consensus 78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp SCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred cCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 999999999999987544 3444 7999999999999887654 2 3699999999999875332
Q ss_pred -hhhhcCCC-CCCEEECCCCCCCCCcccC---cCCCCC-CCcCEEEcCCCCCCCC--hhhhhhcCC-CCCCCEEeCcCCC
Q 041570 213 -VQEFDSLS-NLEELYLSNNKGINNFVVP---QDYRGL-SKLKRLDLSGVGIRDG--SELLRSMGS-FPSLKTLFLEANN 283 (394)
Q Consensus 213 -~~~~~~l~-~L~~L~l~~n~~~~~~~~~---~~~~~l-~~L~~L~l~~n~~~~~--~~~~~~l~~-~~~L~~L~l~~n~ 283 (394)
...+...+ +|++|++++|.+. +..+. ..+... ++|++|++++|.+++. ..++..+.. .++|++|++++|.
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLA-SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGG-GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred HHHHHhcCCccccEeeecCCCCc-hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 13345555 9999999999886 32221 133445 5999999999998752 225556655 4589999999999
Q ss_pred CCccch----hhcCCCCCCCEEEcCCCcCCh-------hhhhchhccCCCCeEecCCcccceeech
Q 041570 284 FTATTT----QELHNFTNLEFLNLRHSSLDI-------NLLKTIASFTSLKNLSMVSCEVNGVLDG 338 (394)
Q Consensus 284 ~~~~~~----~~l~~~~~L~~L~l~~n~l~~-------~~~~~l~~~~~L~~L~l~~n~l~~~ip~ 338 (394)
+++..+ ..+..+++|+.|++++|.+.+ .++..+..+++|++|++++|.+.+..+.
T Consensus 237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 987654 345677899999999998432 3345677888999999999998866443
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=7.6e-22 Score=178.76 Aligned_cols=207 Identities=19% Similarity=0.231 Sum_probs=155.6
Q ss_pred EEEcccccCCccchHhhhcCCCCCEEEcCCceeeccccccCCCCCCEEEcCCCCCCcccc-ccCCCCcEEEccCcccCCc
Q 041570 132 FLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIEVKGSSKLQSLDLSHNNLNRIIL-SSLTTLSELYLSGMGFEGT 210 (394)
Q Consensus 132 ~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~L~~L~l~~~~~~~~ 210 (394)
.+.+..+.+.+.+. ..++++|++|++++|.+.....+..+++|++|++++|.+.+..+ ..+++|++|++++|.+.+
T Consensus 23 ~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~- 99 (308)
T 1h6u_A 23 KIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN- 99 (308)
T ss_dssp HHHTTCSSTTSEEC--HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC-
T ss_pred HHHhCCCCcCceec--HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCC-
Confidence 34555666654333 45678999999999988774346777899999999998877653 377888888888888774
Q ss_pred cChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchh
Q 041570 211 FDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQ 290 (394)
Q Consensus 211 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 290 (394)
+ ..+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++..+
T Consensus 100 ~--~~~~~l~~L~~L~l~~n~l~--~~~--~l~~l~~L~~L~l~~n~l~~~---~~-l~~l~~L~~L~l~~n~l~~~~~- 168 (308)
T 1h6u_A 100 V--SAIAGLQSIKTLDLTSTQIT--DVT--PLAGLSNLQVLYLDLNQITNI---SP-LAGLTNLQYLSIGNAQVSDLTP- 168 (308)
T ss_dssp C--GGGTTCTTCCEEECTTSCCC--CCG--GGTTCTTCCEEECCSSCCCCC---GG-GGGCTTCCEEECCSSCCCCCGG-
T ss_pred c--hhhcCCCCCCEEECCCCCCC--Cch--hhcCCCCCCEEECCCCccCcC---cc-ccCCCCccEEEccCCcCCCChh-
Confidence 3 35778888888888888876 233 377888888888888888764 32 6777888888888888876544
Q ss_pred hcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccC
Q 041570 291 ELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALN 360 (394)
Q Consensus 291 ~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~ 360 (394)
+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++. +. +..+++|++|++++ |.++
T Consensus 169 -l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~-~~--l~~l~~L~~L~l~~--N~i~ 230 (308)
T 1h6u_A 169 -LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV-SP--LANTSNLFIVTLTN--QTIT 230 (308)
T ss_dssp -GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBC-GG--GTTCTTCCEEEEEE--EEEE
T ss_pred -hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcc-cc--ccCCCCCCEEEccC--Ceee
Confidence 7788888888888888875443 67788888888888888743 33 57788888888888 7776
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=9.2e-22 Score=172.94 Aligned_cols=179 Identities=20% Similarity=0.279 Sum_probs=137.2
Q ss_pred CCCCEEEcCCCCCCccccccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEc
Q 041570 174 SKLQSLDLSHNNLNRIILSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDL 253 (394)
Q Consensus 174 ~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l 253 (394)
.+.++++++++.++.....-.++++.|++++|.+.+..+ ..++.+++|++|++++|.+. .+++..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSD-ATFRGLTKLTWLNLDYNQLQ--TLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCC--CCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCH-hHhcCcccCCEEECCCCcCC--ccCHhHhccCCcCCEEEC
Confidence 356778888888876554445678888888888876554 67788888888888888876 344446788888888888
Q ss_pred CCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccc
Q 041570 254 SGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVN 333 (394)
Q Consensus 254 ~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 333 (394)
++|.+++. .+..+..+++|++|++++|++++..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|.++
T Consensus 91 ~~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 91 ANNQLASL--PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp TTSCCCCC--CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCccccc--ChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 88888765 4556677888888888888888777777778888888888888888666667788888888888888888
Q ss_pred eeechhhccCCCCCcEEEcCCCCcccC
Q 041570 334 GVLDGQGFLNFKSLERLDMGGARNALN 360 (394)
Q Consensus 334 ~~ip~~~~~~~~~L~~L~l~~~~n~l~ 360 (394)
+..+. .+..+++|++|++++ |.++
T Consensus 169 ~~~~~-~~~~l~~L~~L~l~~--N~~~ 192 (251)
T 3m19_A 169 SVPHG-AFDRLGKLQTITLFG--NQFD 192 (251)
T ss_dssp CCCTT-TTTTCTTCCEEECCS--CCBC
T ss_pred ccCHH-HHhCCCCCCEEEeeC--Ccee
Confidence 44443 677788888888888 7777
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=4.8e-22 Score=180.39 Aligned_cols=225 Identities=17% Similarity=0.107 Sum_probs=170.4
Q ss_pred CCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhh--hcCCCCCEEEcCCceeecccc------cc
Q 041570 100 QQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSL--ARLSSLISLSLSHNKLEGSIE------VK 171 (394)
Q Consensus 100 ~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l--~~l~~L~~L~l~~n~l~~~~~------~~ 171 (394)
..++.+.+.++.++......... ...+++|++|++++|.+.+..|..+ .++++|++|++++|.+++..+ +.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 45778888887765332221111 2234679999999999988888877 889999999999999887433 34
Q ss_pred CCCCCCEEEcCCCCCCccccc---cCCCCcEEEccCcccCCc--c-ChhhhcCCCCCCEEECCCCCCCCCcccC---cCC
Q 041570 172 GSSKLQSLDLSHNNLNRIILS---SLTTLSELYLSGMGFEGT--F-DVQEFDSLSNLEELYLSNNKGINNFVVP---QDY 242 (394)
Q Consensus 172 ~~~~L~~L~l~~n~l~~~~~~---~l~~L~~L~l~~~~~~~~--~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~---~~~ 242 (394)
.+++|++|++++|++.+..+. .+++|++|++++|.+.+. + +...++.+++|++|++++|++. .++. ..+
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~ 220 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME--TPTGVCAALA 220 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC--CHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC--chHHHHHHHH
Confidence 678999999999999887665 788899999999987642 2 1123468889999999999886 2222 124
Q ss_pred CCCCCcCEEEcCCCCCCCChhhhhhcCCC---CCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhcc
Q 041570 243 RGLSKLKRLDLSGVGIRDGSELLRSMGSF---PSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASF 319 (394)
Q Consensus 243 ~~l~~L~~L~l~~n~~~~~~~~~~~l~~~---~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~ 319 (394)
..+++|++|++++|.+++. .|..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|.+++. |. +..+
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~--~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l 293 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRAT--VNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDEL 293 (310)
T ss_dssp HHTCCCSSEECTTSCCCCC--CCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSC
T ss_pred hcCCCCCEEECCCCCCCcc--chhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhC
Confidence 6778999999999999886 56666665 68999999999998 5566554 7999999999999863 33 5778
Q ss_pred CCCCeEecCCcccce
Q 041570 320 TSLKNLSMVSCEVNG 334 (394)
Q Consensus 320 ~~L~~L~l~~n~l~~ 334 (394)
++|++|++++|.++.
T Consensus 294 ~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 294 PEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCSCEECSSTTTSC
T ss_pred CCccEEECcCCCCCC
Confidence 999999999998863
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=4.2e-21 Score=168.71 Aligned_cols=178 Identities=20% Similarity=0.233 Sum_probs=154.0
Q ss_pred CCCCEEEcCCceeeccccccCCCCCCEEEcCCCCCCccccc---cCCCCcEEEccCcccCCccChhhhcCCCCCCEEECC
Q 041570 152 SSLISLSLSHNKLEGSIEVKGSSKLQSLDLSHNNLNRIILS---SLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLS 228 (394)
Q Consensus 152 ~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 228 (394)
...++++++++.++. +|..-.++++.|++++|.+++..+. .+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~-~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDS-VPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA-GVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSS-CCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccc-cCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH-hHhccCCcCCEEECC
Confidence 457889999998886 5544447999999999999987664 78899999999999986555 778999999999999
Q ss_pred CCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcC
Q 041570 229 NNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSL 308 (394)
Q Consensus 229 ~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 308 (394)
+|.+. .+++..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..+..|..+++|+.|++++|.+
T Consensus 92 ~n~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 167 (251)
T 3m19_A 92 NNQLA--SLPLGVFDHLTQLDKLYLGGNQLKSL--PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167 (251)
T ss_dssp TSCCC--CCCTTTTTTCTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCccc--ccChhHhcccCCCCEEEcCCCcCCCc--ChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcC
Confidence 99987 55655789999999999999999875 445578899999999999999988887899999999999999999
Q ss_pred ChhhhhchhccCCCCeEecCCccccee
Q 041570 309 DINLLKTIASFTSLKNLSMVSCEVNGV 335 (394)
Q Consensus 309 ~~~~~~~l~~~~~L~~L~l~~n~l~~~ 335 (394)
++..+..+..+++|++|++++|.+.+.
T Consensus 168 ~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 168 QSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 977777889999999999999999876
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=9.5e-22 Score=171.56 Aligned_cols=175 Identities=18% Similarity=0.255 Sum_probs=115.7
Q ss_pred cCCCCcEEEccCcc-cCCccChhhhcCCCCCCEEECCC-CCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCC
Q 041570 193 SLTTLSELYLSGMG-FEGTFDVQEFDSLSNLEELYLSN-NKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGS 270 (394)
Q Consensus 193 ~l~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~ 270 (394)
.+++|++|++++|. ++ .++...+..+++|++|++++ |.+. .+++..|..+++|++|++++|.+++ +|. +..
T Consensus 53 ~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~--~i~~~~f~~l~~L~~L~l~~n~l~~---lp~-~~~ 125 (239)
T 2xwt_C 53 NLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLT--YIDPDALKELPLLKFLGIFNTGLKM---FPD-LTK 125 (239)
T ss_dssp TCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCC--EECTTSEECCTTCCEEEEEEECCCS---CCC-CTT
T ss_pred CCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCee--EcCHHHhCCCCCCCEEeCCCCCCcc---ccc-ccc
Confidence 34455555555554 33 33334566777777777776 6665 4554466777777777777777766 343 666
Q ss_pred CCCCC---EEeCcCC-CCCccchhhcCCCCCCC-EEEcCCCcCChhhhhchhccCCCCeEecCCcc-cceeechhhccCC
Q 041570 271 FPSLK---TLFLEAN-NFTATTTQELHNFTNLE-FLNLRHSSLDINLLKTIASFTSLKNLSMVSCE-VNGVLDGQGFLNF 344 (394)
Q Consensus 271 ~~~L~---~L~l~~n-~~~~~~~~~l~~~~~L~-~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~-l~~~ip~~~~~~~ 344 (394)
+++|+ +|++++| .+++..+..|..+++|+ .|++++|.++ .+|......++|++|++++|. ++ .+|...+..+
T Consensus 126 l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~-~i~~~~~~~l 203 (239)
T 2xwt_C 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLT-VIDKDAFGGV 203 (239)
T ss_dssp CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCC-EECTTTTTTC
T ss_pred ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcc-cCCHHHhhcc
Confidence 66666 7777777 77766666677777777 7888777777 444433333678888888884 66 5554467777
Q ss_pred -CCCcEEEcCCCCcccCCccccccccccCCCcEEecccc
Q 041570 345 -KSLERLDMGGARNALNASFLQIIGESMASLKHLSLSYS 382 (394)
Q Consensus 345 -~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n 382 (394)
++|++|++++ |.++ .+|.. .+++|+.|+++++
T Consensus 204 ~~~L~~L~l~~--N~l~--~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 204 YSGPSLLDVSQ--TSVT--ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp SBCCSEEECTT--CCCC--CCCCT--TCTTCSEEECTTC
T ss_pred ccCCcEEECCC--Cccc--cCChh--HhccCceeeccCc
Confidence 7788888888 7776 55544 5677778877765
No 92
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.85 E-value=2e-22 Score=199.28 Aligned_cols=207 Identities=15% Similarity=0.125 Sum_probs=135.2
Q ss_pred CCCCCEEEcCCCCCCcccc----ccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCC---------CCCCCCcccC
Q 041570 173 SSKLQSLDLSHNNLNRIIL----SSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSN---------NKGINNFVVP 239 (394)
Q Consensus 173 ~~~L~~L~l~~n~l~~~~~----~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~---------n~~~~~~~~~ 239 (394)
+++|++|++++|.+++..+ ..+++|++|++++| ++..........+++|++|++.. +.+. +....
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~-~~~l~ 365 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALT-EQGLV 365 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCC-HHHHH
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCC-HHHHH
Confidence 4677777777777665432 26777777777776 32111112233577788887733 2222 11111
Q ss_pred cCCCCCCCcCEEEcCCCCCCCChhhhhhcC-CCCCCCEEeCc--C----CCCCcc-----chhhcCCCCCCCEEEcCCCc
Q 041570 240 QDYRGLSKLKRLDLSGVGIRDGSELLRSMG-SFPSLKTLFLE--A----NNFTAT-----TTQELHNFTNLEFLNLRHSS 307 (394)
Q Consensus 240 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~-~~~~L~~L~l~--~----n~~~~~-----~~~~l~~~~~L~~L~l~~n~ 307 (394)
.....+++|++|.++.+.+++. .+..+. .+++|++|+++ + +.+++. ++..+..+++|+.|++++ .
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~--~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~ 442 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNA--ALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-L 442 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHH--HHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-S
T ss_pred HHHHhchhHHHHHHhcCCcCHH--HHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-c
Confidence 1123467888888877777654 333443 47889999998 3 455521 223356678899999977 7
Q ss_pred CChhhhhchhc-cCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccccccccccCCCcEEeccccccce
Q 041570 308 LDINLLKTIAS-FTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLSYSILNA 386 (394)
Q Consensus 308 l~~~~~~~l~~-~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~l~g 386 (394)
+++..+..+.. +++|++|++++|.+++..+......+++|++|++++ |.+++..++.....+++|+.|++++|+++.
T Consensus 443 l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~--n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 443 LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRD--CPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEES--CSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred ccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcC--CCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 77766666665 889999999999887655542336789999999999 777622333455678999999999998743
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=3.8e-21 Score=167.75 Aligned_cols=62 Identities=16% Similarity=0.251 Sum_probs=39.9
Q ss_pred CCCEEeccCCcCCCccccchhhhhcCCCCCcEEEccccc-CCccchHhhhcCCCCCEEEcCC-ceeec
Q 041570 101 QLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNL-FKNSISSSLARLSSLISLSLSH-NKLEG 166 (394)
Q Consensus 101 ~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~-~~~~~p~~l~~l~~L~~L~l~~-n~l~~ 166 (394)
++++|++++|.+++..+.. +.++++|++|++++|. +++..+..|.++++|++|++++ |.+++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~----~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~ 95 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHA----FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95 (239)
T ss_dssp TCCEEEEESCCCSEECTTT----TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE
T ss_pred cccEEEEeCCcceEECHHH----ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE
Confidence 6777777777776554432 6667777777777775 6544444566666666666665 55554
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=5.6e-21 Score=162.96 Aligned_cols=180 Identities=18% Similarity=0.164 Sum_probs=108.9
Q ss_pred EEEcCCCCCCccccccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCC
Q 041570 178 SLDLSHNNLNRIILSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVG 257 (394)
Q Consensus 178 ~L~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~ 257 (394)
.++.+++.++.......++|++|++++|.+++ ++...++.+++|++|++++|++. .++...+..+++|++|++++|.
T Consensus 11 ~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGIPAQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQ--SLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCccCCCCCCCCCCcEEEcCCCccCc-CChhhhcccccCcEEECCCCccC--ccChhhcCCCCCcCEEECCCCc
Confidence 44444444444333334456666666666553 33245666667777777776665 3444455666677777777776
Q ss_pred CCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeec
Q 041570 258 IRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLD 337 (394)
Q Consensus 258 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip 337 (394)
+++. .+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 88 l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--- 162 (208)
T 2o6s_A 88 LQSL--PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--- 162 (208)
T ss_dssp CCCC--CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred CCcc--CHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence 6654 33345666677777777777666655556666777777777777665555556666777777777765542
Q ss_pred hhhccCCCCCcEEEcCCCCcccCCccccccccccCC
Q 041570 338 GQGFLNFKSLERLDMGGARNALNASFLQIIGESMAS 373 (394)
Q Consensus 338 ~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~ 373 (394)
.+++|++|+++. |.++ |.+|..++.++.
T Consensus 163 -----~~~~l~~L~~~~--n~~~-g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 -----TCPGIRYLSEWI--NKHS-GVVRNSAGSVAP 190 (208)
T ss_dssp -----CTTTTHHHHHHH--HHCT-TTBBCTTSSBCT
T ss_pred -----CCCCHHHHHHHH--HhCC-ceeeccCccccC
Confidence 234566666666 6666 777766665544
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=3.1e-20 Score=158.40 Aligned_cols=174 Identities=17% Similarity=0.137 Sum_probs=147.8
Q ss_pred cEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEE
Q 041570 198 SELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTL 277 (394)
Q Consensus 198 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L 277 (394)
+.++.+++.++ .+| . +..++|++|++++|++. .++...+..+++|++|++++|.+++. .+..+..+++|++|
T Consensus 10 ~~v~c~~~~l~-~~p-~--~~~~~l~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L 81 (208)
T 2o6s_A 10 TTVECYSQGRT-SVP-T--GIPAQTTYLDLETNSLK--SLPNGVFDELTSLTQLYLGGNKLQSL--PNGVFNKLTSLTYL 81 (208)
T ss_dssp TEEECCSSCCS-SCC-S--CCCTTCSEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCCC--CTTTTTTCTTCCEE
T ss_pred CEEEecCCCcc-CCC-C--CCCCCCcEEEcCCCccC--cCChhhhcccccCcEEECCCCccCcc--ChhhcCCCCCcCEE
Confidence 56777777766 444 2 23568999999999987 45665789999999999999999875 44557889999999
Q ss_pred eCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCc
Q 041570 278 FLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARN 357 (394)
Q Consensus 278 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n 357 (394)
++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++ ++...+..+++|++|++++ |
T Consensus 82 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~--N 158 (208)
T 2o6s_A 82 NLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHD--N 158 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCS--C
T ss_pred ECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce-eCHHHhccCCCccEEEecC--C
Confidence 999999998888888999999999999999997777778999999999999999994 5554788999999999999 8
Q ss_pred ccCCccccccccccCCCcEEeccccccceeEee
Q 041570 358 ALNASFLQIIGESMASLKHLSLSYSILNANCTI 390 (394)
Q Consensus 358 ~l~~g~l~~~~~~~~~L~~L~l~~n~l~g~~~~ 390 (394)
.+. + .+++|+.|+++.|+++|.+|.
T Consensus 159 ~~~-~-------~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 159 PWD-C-------TCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp CBC-C-------CTTTTHHHHHHHHHCTTTBBC
T ss_pred Cee-c-------CCCCHHHHHHHHHhCCceeec
Confidence 777 4 457899999999999999984
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=3.2e-20 Score=180.37 Aligned_cols=186 Identities=16% Similarity=0.151 Sum_probs=85.3
Q ss_pred CCCEEEcCCceeeccccccCCCCCCEEEcCCCCCCccccccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCC
Q 041570 153 SLISLSLSHNKLEGSIEVKGSSKLQSLDLSHNNLNRIILSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKG 232 (394)
Q Consensus 153 ~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 232 (394)
+|+.|++++|.+++ +|..-.++|++|++++|+++. +|..+++|++|++++|.+++ +| . +.. +|++|++++|.+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~~~L~~L~Ls~N~l~~-ip~~l~~L~~L~Ls~N~l~~-ip-~-l~~--~L~~L~Ls~N~l 132 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLPPQITVLEITQNALIS-LPELPASLEYLDACDNRLST-LP-E-LPA--SLKHLDVDNNQL 132 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCCTTCSEEECCSSCCSC-CCCCCTTCCEEECCSSCCSC-CC-C-CCT--TCCEEECCSSCC
T ss_pred CccEEEeCCCCCCc-cCHhHcCCCCEEECcCCCCcc-cccccCCCCEEEccCCCCCC-cc-h-hhc--CCCEEECCCCcC
Confidence 44444444444443 332122444444444444442 22344445555555554443 33 2 222 455555555554
Q ss_pred CCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhh
Q 041570 233 INNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINL 312 (394)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 312 (394)
. + +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++ .+
T Consensus 133 ~-~-lp~----~l~~L~~L~Ls~N~l~~---lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 133 T-M-LPE----LPALLEYINADNNQLTM---LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp S-C-CCC----CCTTCCEEECCSSCCSC---CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred C-C-CCC----cCccccEEeCCCCccCc---CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 4 2 332 34455555555555544 232 23455555555555554 233 33 45555555555555 33
Q ss_pred hhchhccCCC-------CeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccccccccc
Q 041570 313 LKTIASFTSL-------KNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGES 370 (394)
Q Consensus 313 ~~~l~~~~~L-------~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~ 370 (394)
|. +.. +| +.|++++|.++ .+|. .+..+++|+.|++++ |.++ +.+|..+..
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~-~l~~l~~L~~L~L~~--N~l~-~~~p~~l~~ 252 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPE-NILSLDPTCTIILED--NPLS-SRIRESLSQ 252 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCG-GGGGSCTTEEEECCS--SSCC-HHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCH-HHhcCCCCCEEEeeC--CcCC-CcCHHHHHH
Confidence 33 322 34 55555555555 4554 333455555555555 5555 555544443
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=5.4e-20 Score=178.76 Aligned_cols=183 Identities=17% Similarity=0.148 Sum_probs=155.3
Q ss_pred CCCCEEEcCCCCCCccccccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEc
Q 041570 174 SKLQSLDLSHNNLNRIILSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDL 253 (394)
Q Consensus 174 ~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l 253 (394)
.+++.|++++|.+++..+.-+++|++|++++|.++ .+| ..+++|++|++++|++. + +|. +.. +|++|++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~-~-ip~--l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLPPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLS-T-LPE--LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCS-C-CCC--CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCccCHhHcCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCC-C-cch--hhc--CCCEEEC
Confidence 48999999999999844436689999999999998 566 45799999999999997 3 665 544 9999999
Q ss_pred CCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccc
Q 041570 254 SGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVN 333 (394)
Q Consensus 254 ~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 333 (394)
++|.+++ +|. .+++|++|++++|.+++ +|. .+++|+.|++++|.+++ +|. +. ++|++|++++|.++
T Consensus 128 s~N~l~~---lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 128 DNNQLTM---LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp CSSCCSC---CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred CCCcCCC---CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence 9999988 565 57899999999999997 444 57899999999999996 666 65 89999999999999
Q ss_pred eeechhhccCCCCC-------cEEEcCCCCcccCCccccccccccCCCcEEeccccccceeEee
Q 041570 334 GVLDGQGFLNFKSL-------ERLDMGGARNALNASFLQIIGESMASLKHLSLSYSILNANCTI 390 (394)
Q Consensus 334 ~~ip~~~~~~~~~L-------~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~l~g~~~~ 390 (394)
.+|. +.. +| +.|++++ |.++ .+|..+..+++|+.|+|++|+++|.+|.
T Consensus 194 -~lp~--~~~--~L~~~~~~L~~L~Ls~--N~l~--~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 194 -SLPA--VPV--RNHHSEETEIFFRCRE--NRIT--HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp -SCCC--CC----------CCEEEECCS--SCCC--CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred -chhh--HHH--hhhcccccceEEecCC--Ccce--ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 7777 332 66 9999999 9998 7999888899999999999999997763
No 98
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=3.7e-22 Score=197.38 Aligned_cols=304 Identities=18% Similarity=0.133 Sum_probs=158.3
Q ss_pred CcEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCC-cCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhh
Q 041570 71 GRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNN-SIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLA 149 (394)
Q Consensus 71 ~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~ 149 (394)
.+++.++++++.+++.+... ....+++|++|++++| .++..... ....++++|++|++++|.+++..+..+.
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~----l~~~~~~L~~L~L~~~~~~~~~~l~---~~~~~~~~L~~L~L~~~~i~~~~~~~l~ 177 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLEL----IAKSFKNFKVLVLSSCEGFSTDGLA---AIAATCRNLKELDLRESDVDDVSGHWLS 177 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHH----HHHHCTTCCEEEEESCEEEEHHHHH---HHHHHCTTCCEEECTTCEEECCCGGGGG
T ss_pred CCCCeEEeeCcEEcHHHHHH----HHHhCCCCcEEeCCCcCCCCHHHHH---HHHHhCCCCCEEeCcCCccCCcchHHHH
Confidence 46788888887654332211 1124667777777776 33221111 1133567777777777766544333332
Q ss_pred ----cCCCCCEEEcCCce--eecc-cc--ccCCCCCCEEEcCCCCCCccccc---cC-----------------------
Q 041570 150 ----RLSSLISLSLSHNK--LEGS-IE--VKGSSKLQSLDLSHNNLNRIILS---SL----------------------- 194 (394)
Q Consensus 150 ----~l~~L~~L~l~~n~--l~~~-~~--~~~~~~L~~L~l~~n~l~~~~~~---~l----------------------- 194 (394)
.+++|++|++++|. +... ++ ...+++|++|++++|...+.++. .+
T Consensus 178 ~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l 257 (594)
T 2p1m_B 178 HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL 257 (594)
T ss_dssp GSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHH
T ss_pred HHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHH
Confidence 45577777777665 2111 11 22346666666666521111111 33
Q ss_pred -------------------------------CCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCC
Q 041570 195 -------------------------------TTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYR 243 (394)
Q Consensus 195 -------------------------------~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 243 (394)
++|++|++++|.+++......+..+++|++|++.+| +....+. ....
T Consensus 258 ~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~-~l~~ 335 (594)
T 2p1m_B 258 SVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLE-VLAS 335 (594)
T ss_dssp HHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHH-HHHH
T ss_pred HHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHH-HHHH
Confidence 444444444444332211122334444444444444 1100111 1122
Q ss_pred CCCCcCEEEcCC---------CCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcC-CCCCCCEEEcC--C----Cc
Q 041570 244 GLSKLKRLDLSG---------VGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELH-NFTNLEFLNLR--H----SS 307 (394)
Q Consensus 244 ~l~~L~~L~l~~---------n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L~l~--~----n~ 307 (394)
.+++|++|++++ +.+++. .+......+++|++|.+..+.+++..+..+. .+++|+.|+++ + +.
T Consensus 336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~-~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~ 414 (594)
T 2p1m_B 336 TCKDLRELRVFPSEPFVMEPNVALTEQ-GLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY 414 (594)
T ss_dssp HCTTCCEEEEECSCTTCSSCSSCCCHH-HHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCT
T ss_pred hCCCCCEEEEecCcccccccCCCCCHH-HHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccc
Confidence 345556665522 233221 0111112356666666666666655544443 46778888877 3 44
Q ss_pred CC-----hhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccccccccccCCCcEEecccc
Q 041570 308 LD-----INLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLSYS 382 (394)
Q Consensus 308 l~-----~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n 382 (394)
++ ..++..+..+++|++|++++ .+++..+......+++|++|++++ |.+++..++.....+++|+.|++++|
T Consensus 415 l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~--~~i~~~~~~~l~~~~~~L~~L~L~~n 491 (594)
T 2p1m_B 415 LTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAF--AGDSDLGMHHVLSGCDSLRKLEIRDC 491 (594)
T ss_dssp TTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEES--CCSSHHHHHHHHHHCTTCCEEEEESC
T ss_pred ccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccC--CCCcHHHHHHHHhcCCCcCEEECcCC
Confidence 54 13344456777888888866 555444441222378899999998 77772333343467899999999999
Q ss_pred cccee
Q 041570 383 ILNAN 387 (394)
Q Consensus 383 ~l~g~ 387 (394)
.+++.
T Consensus 492 ~~~~~ 496 (594)
T 2p1m_B 492 PFGDK 496 (594)
T ss_dssp SCCHH
T ss_pred CCcHH
Confidence 88543
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=8.7e-20 Score=179.17 Aligned_cols=172 Identities=26% Similarity=0.335 Sum_probs=110.5
Q ss_pred cCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeeccccccCCCCCCEEEcCCCCCCccc-cccCCCCcEEEcc
Q 041570 125 SRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIEVKGSSKLQSLDLSHNNLNRII-LSSLTTLSELYLS 203 (394)
Q Consensus 125 ~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~L~~L~l~ 203 (394)
..+++|++|++++|.+. .++ .+..+++|++|+|++|.+++..++..+++|+.|++++|.+.+.. ...+++|+.|+++
T Consensus 40 ~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLE 117 (605)
T ss_dssp HHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECT
T ss_pred hcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChhhccCCCCCEEEec
Confidence 44566666666666665 233 45666666666666666666555555566666666666655431 1155666666666
Q ss_pred CcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCC
Q 041570 204 GMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANN 283 (394)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~ 283 (394)
+|.+.+ + ..+..+++|+.|+|++|.+. + + ..+..+++|+.|+|++|.+.+. .| +..+++|++|+|++|+
T Consensus 118 ~N~l~~-l--~~l~~l~~L~~L~Ls~N~l~-~-l--~~l~~l~~L~~L~Ls~N~l~~~--~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 118 HNGISD-I--NGLVHLPQLESLYLGNNKIT-D-I--TVLSRLTKLDTLSLEDNQISDI--VP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp TSCCCC-C--GGGGGCTTCSEEECCSSCCC-C-C--GGGGSCTTCSEEECCSSCCCCC--GG--GTTCTTCCEEECCSSC
T ss_pred CCCCCC-C--ccccCCCccCEEECCCCccC-C-c--hhhcccCCCCEEECcCCcCCCc--hh--hccCCCCCEEECcCCC
Confidence 666653 2 34667777778888777776 2 2 2567777777777777777764 33 6777777777777777
Q ss_pred CCccchhhcCCCCCCCEEEcCCCcCChh
Q 041570 284 FTATTTQELHNFTNLEFLNLRHSSLDIN 311 (394)
Q Consensus 284 ~~~~~~~~l~~~~~L~~L~l~~n~l~~~ 311 (394)
+++. ..+..+++|+.|+|++|.+.+.
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 7754 3467777777777777777643
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.4e-19 Score=166.86 Aligned_cols=233 Identities=15% Similarity=0.105 Sum_probs=147.1
Q ss_pred EecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchH-hhhcCCCC
Q 041570 76 LDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISS-SLARLSSL 154 (394)
Q Consensus 76 l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~-~l~~l~~L 154 (394)
++.++++++.++.. . .+++++|+|++|+++...+.. |.++++|++|+|++|.+.+.+|. .|.+++++
T Consensus 14 v~C~~~~Lt~iP~~-----l---~~~l~~L~Ls~N~i~~i~~~~----f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l 81 (350)
T 4ay9_X 14 FLCQESKVTEIPSD-----L---PRNAIELRFVLTKLRVIQKGA----FSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81 (350)
T ss_dssp EEEESTTCCSCCTT-----C---CTTCSEEEEESCCCSEECTTS----STTCTTCCEEEEECCTTCCEECTTSBCSCTTC
T ss_pred EEecCCCCCccCcC-----c---CCCCCEEEccCCcCCCcCHHH----HcCCCCCCEEECcCCCCCCccChhHhhcchhh
Confidence 55666666544321 1 257888999998887544433 78888899999999888766654 56778777
Q ss_pred CE-EEcCCceeecccc--ccCCCCCCEEEcCCCCCCccccc---cCCCCcEEEccCcccCCccChhhhcCCC-CCCEEEC
Q 041570 155 IS-LSLSHNKLEGSIE--VKGSSKLQSLDLSHNNLNRIILS---SLTTLSELYLSGMGFEGTFDVQEFDSLS-NLEELYL 227 (394)
Q Consensus 155 ~~-L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l 227 (394)
++ +.+.+|.++...| +..+++|++|++++|++....+. ...++..+++.++.....++...+..+. .+++|++
T Consensus 82 ~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L 161 (350)
T 4ay9_X 82 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 161 (350)
T ss_dssp CEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred hhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcc
Confidence 65 5556677776444 56678888888888887765443 3445666777554333344434454443 5777777
Q ss_pred CCCCCCCCcccCcCCCCCCCcCEEEcCC-CCCCCChhhh-hhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCC
Q 041570 228 SNNKGINNFVVPQDYRGLSKLKRLDLSG-VGIRDGSELL-RSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRH 305 (394)
Q Consensus 228 ~~n~~~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 305 (394)
++|++. .++...+ ...+|+++++++ |.++. +| ..+..+++|++|++++|+++..++.. +.+|+.|.+.+
T Consensus 162 ~~N~i~--~i~~~~f-~~~~L~~l~l~~~n~l~~---i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~ 232 (350)
T 4ay9_X 162 NKNGIQ--EIHNSAF-NGTQLDELNLSDNNNLEE---LPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARS 232 (350)
T ss_dssp CSSCCC--EECTTSS-TTEEEEEEECTTCTTCCC---CCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTT
T ss_pred cccccc--CCChhhc-cccchhHHhhccCCcccC---CCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhcc
Confidence 777775 4555333 445677777764 44444 44 34567777777777777777554433 34556665555
Q ss_pred CcCChhhhhchhccCCCCeEecCCc
Q 041570 306 SSLDINLLKTIASFTSLKNLSMVSC 330 (394)
Q Consensus 306 n~l~~~~~~~l~~~~~L~~L~l~~n 330 (394)
+.--..+| .+..+++|+.+++.++
T Consensus 233 ~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 233 TYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred CCCcCcCC-CchhCcChhhCcCCCC
Confidence 43333455 3566777777777654
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=3.6e-19 Score=159.72 Aligned_cols=184 Identities=22% Similarity=0.357 Sum_probs=125.2
Q ss_pred EEcCCceeeccccccCCCCCCEEEcCCCCCCccc-cccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCC
Q 041570 157 LSLSHNKLEGSIEVKGSSKLQSLDLSHNNLNRII-LSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINN 235 (394)
Q Consensus 157 L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 235 (394)
+.+..+.+.+..+...+++|++|++++|.+.... ...+++|++|++++|.+++. + . +..+++|++|++++|.+.
T Consensus 29 ~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~-~-~-l~~l~~L~~L~l~~n~l~-- 103 (291)
T 1h6t_A 29 DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI-K-P-LANLKNLGWLFLDENKVK-- 103 (291)
T ss_dssp HHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC-G-G-GTTCTTCCEEECCSSCCC--
T ss_pred HHhcCCCcccccchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCC-c-c-cccCCCCCEEECCCCcCC--
Confidence 3455555555445556677888888888776542 22667777777777777643 2 2 677777777777777765
Q ss_pred cccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhc
Q 041570 236 FVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKT 315 (394)
Q Consensus 236 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 315 (394)
.++ .+..+++|++|++++|.+++. +.+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+
T Consensus 104 ~~~--~l~~l~~L~~L~L~~n~i~~~----~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-- 173 (291)
T 1h6t_A 104 DLS--SLKDLKKLKSLSLEHNGISDI----NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-- 173 (291)
T ss_dssp CGG--GGTTCTTCCEEECTTSCCCCC----GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred CCh--hhccCCCCCEEECCCCcCCCC----hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--
Confidence 233 367777777777777777663 2456677777777777777755 456677777777777777775444
Q ss_pred hhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccC
Q 041570 316 IASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALN 360 (394)
Q Consensus 316 l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~ 360 (394)
+..+++|++|++++|.++ .++. +..+++|+.|++++ |.++
T Consensus 174 l~~l~~L~~L~L~~N~i~-~l~~--l~~l~~L~~L~l~~--n~i~ 213 (291)
T 1h6t_A 174 LAGLTKLQNLYLSKNHIS-DLRA--LAGLKNLDVLELFS--QECL 213 (291)
T ss_dssp GTTCTTCCEEECCSSCCC-BCGG--GTTCTTCSEEEEEE--EEEE
T ss_pred hcCCCccCEEECCCCcCC-CChh--hccCCCCCEEECcC--Cccc
Confidence 677777777777777776 3443 66777777777777 6665
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=1.3e-19 Score=155.80 Aligned_cols=153 Identities=18% Similarity=0.263 Sum_probs=80.8
Q ss_pred cEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEE
Q 041570 198 SELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTL 277 (394)
Q Consensus 198 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L 277 (394)
+.++++++.++ .+| ..+ .+.+++|++++|.+. +..+...+..+++|++|++++|.+++. .+..+..+++|++|
T Consensus 14 ~~l~~s~n~l~-~iP-~~~--~~~~~~L~L~~N~l~-~~~~~~~~~~l~~L~~L~L~~N~i~~i--~~~~~~~l~~L~~L 86 (220)
T 2v70_A 14 TTVDCSNQKLN-KIP-EHI--PQYTAELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDI--EEGAFEGASGVNEI 86 (220)
T ss_dssp TEEECCSSCCS-SCC-SCC--CTTCSEEECCSSCCC-EECCCCCGGGCTTCCEEECCSSCCCEE--CTTTTTTCTTCCEE
T ss_pred CEeEeCCCCcc-cCc-cCC--CCCCCEEEcCCCcCC-ccCchhhhccCCCCCEEECCCCcCCEE--CHHHhCCCCCCCEE
Confidence 35556555554 334 222 233455666666554 222323455555556666655555543 33345555555555
Q ss_pred eCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCc
Q 041570 278 FLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARN 357 (394)
Q Consensus 278 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n 357 (394)
++++|++++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|. .+..+++|++|++++ |
T Consensus 87 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~--N 163 (220)
T 2v70_A 87 LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG-AFDTLHSLSTLNLLA--N 163 (220)
T ss_dssp ECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT-TTTTCTTCCEEECCS--C
T ss_pred ECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH-HhcCCCCCCEEEecC--c
Confidence 5555555555555555555555555555555555555555555555555555555544344 455555555555555 5
Q ss_pred ccC
Q 041570 358 ALN 360 (394)
Q Consensus 358 ~l~ 360 (394)
.+.
T Consensus 164 ~l~ 166 (220)
T 2v70_A 164 PFN 166 (220)
T ss_dssp CEE
T ss_pred CCc
Confidence 554
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=2.7e-19 Score=153.78 Aligned_cols=148 Identities=18% Similarity=0.312 Sum_probs=72.9
Q ss_pred cEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEE
Q 041570 198 SELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTL 277 (394)
Q Consensus 198 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L 277 (394)
+.++++++.++ .+| ..+ .+++++|++++|.+. .+++..|..+++|++|++++|.+++. .|..+..+++|++|
T Consensus 14 ~~v~c~~~~l~-~iP-~~l--~~~l~~L~l~~n~i~--~i~~~~~~~l~~L~~L~Ls~N~i~~~--~~~~~~~l~~L~~L 85 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIP-TNL--PETITEIRLEQNTIK--VIPPGAFSPYKKLRRIDLSNNQISEL--APDAFQGLRSLNSL 85 (220)
T ss_dssp TEEECTTSCCS-SCC-SSC--CTTCCEEECCSSCCC--EECTTSSTTCTTCCEEECCSSCCCEE--CTTTTTTCSSCCEE
T ss_pred CEEEcCCCCcC-cCC-Ccc--CcCCCEEECCCCcCC--CcCHhHhhCCCCCCEEECCCCcCCCc--CHHHhhCCcCCCEE
Confidence 34455555444 333 212 134555555555554 33333455555555555555555543 34445555555555
Q ss_pred eCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCC
Q 041570 278 FLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGG 354 (394)
Q Consensus 278 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~ 354 (394)
+|++|.++...+..|..+++|+.|++++|.+++..|..|..+++|++|++++|.+++..+. .+..+++|++|++++
T Consensus 86 ~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 86 VLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG-TFSPLRAIQTMHLAQ 161 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCS
T ss_pred ECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH-HHhCCCCCCEEEeCC
Confidence 5555555544444445555555555555555544444555555555555555555532222 444455555555555
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=6.9e-19 Score=151.20 Aligned_cols=156 Identities=21% Similarity=0.257 Sum_probs=105.3
Q ss_pred EEEcCCCCCCccccccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCC
Q 041570 178 SLDLSHNNLNRIILSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVG 257 (394)
Q Consensus 178 ~L~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~ 257 (394)
.+++++|.++.....-.+.+++|++++|.+++..+...+..+++|++|++++|++. .+++..|..+++|++|++++|.
T Consensus 15 ~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~--~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT--DIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC--EECHHHhCCCCCCCEEECCCCc
Confidence 44555555444222223345566666666654433344677777777777777775 4444467777777777777777
Q ss_pred CCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeec
Q 041570 258 IRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLD 337 (394)
Q Consensus 258 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip 337 (394)
+++. .+..+..+++|++|++++|++++..|..|..+++|+.|++++|.+++..|..+..+++|++|++++|.+.+..+
T Consensus 93 l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 93 LENV--QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCC--CGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred cCcc--CHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 7765 45567777777788888777777777777777778888888777777667777777778888887777766544
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=6.1e-19 Score=152.57 Aligned_cols=133 Identities=23% Similarity=0.288 Sum_probs=62.9
Q ss_pred CCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCC
Q 041570 220 SNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLE 299 (394)
Q Consensus 220 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 299 (394)
++|++|++++|.+. + +++..+..+++|++|++++|.+++. .+..+..+++|++|+|++|++++..+..|..+++|+
T Consensus 40 ~~L~~L~Ls~n~i~-~-~~~~~~~~l~~L~~L~L~~N~l~~i--~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 115 (229)
T 3e6j_A 40 TNAQILYLHDNQIT-K-LEPGVFDSLINLKELYLGSNQLGAL--PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK 115 (229)
T ss_dssp TTCSEEECCSSCCC-C-CCTTTTTTCTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCEEEcCCCccC-c-cCHHHhhCccCCcEEECCCCCCCCc--ChhhcccCCCcCEEECCCCcCCccChhHhCcchhhC
Confidence 44555555555544 2 2222444555555555555555432 222334445555555555555544444444455555
Q ss_pred EEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccC
Q 041570 300 FLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALN 360 (394)
Q Consensus 300 ~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~ 360 (394)
.|++++|.++ .+|..+..+++|++|++++|.++ .+|...+..+++|+.|++++ |.+.
T Consensus 116 ~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~--N~~~ 172 (229)
T 3e6j_A 116 ELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFG--NPWD 172 (229)
T ss_dssp EEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECTT--SCBC
T ss_pred eEeccCCccc-ccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeC--CCcc
Confidence 5555555554 34444445555555555555544 22222444445555555555 4444
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=2.1e-19 Score=166.41 Aligned_cols=180 Identities=19% Similarity=0.154 Sum_probs=121.2
Q ss_pred cEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCC-CCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCE
Q 041570 198 SELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYR-GLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKT 276 (394)
Q Consensus 198 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~ 276 (394)
+.++++++.++ .+| ..+ .+.+++|++++|++. .++...+. .+++|++|++++|.+++. .+..+..+++|++
T Consensus 21 ~~l~c~~~~l~-~iP-~~~--~~~l~~L~Ls~N~l~--~l~~~~~~~~l~~L~~L~L~~N~i~~i--~~~~~~~l~~L~~ 92 (361)
T 2xot_A 21 NILSCSKQQLP-NVP-QSL--PSYTALLDLSHNNLS--RLRAEWTPTRLTNLHSLLLSHNHLNFI--SSEAFVPVPNLRY 92 (361)
T ss_dssp TEEECCSSCCS-SCC-SSC--CTTCSEEECCSSCCC--EECTTSSSSCCTTCCEEECCSSCCCEE--CTTTTTTCTTCCE
T ss_pred CEEEeCCCCcC-ccC-ccC--CCCCCEEECCCCCCC--ccChhhhhhcccccCEEECCCCcCCcc--ChhhccCCCCCCE
Confidence 35555555554 344 222 234677777777765 34444555 777777777777777764 3455677777777
Q ss_pred EeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhc---cCCCCCcEEEcC
Q 041570 277 LFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGF---LNFKSLERLDMG 353 (394)
Q Consensus 277 L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~---~~~~~L~~L~l~ 353 (394)
|+|++|++++..+..|..+++|+.|+|++|.+++..|..|..+++|++|+|++|.++ .+|...+ ..+++|+.|+|+
T Consensus 93 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECC
T ss_pred EECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECC
Confidence 777777777666667777777777777777777666777777777888888887777 4555344 457788888888
Q ss_pred CCCcccCCcccc-ccccccCC--CcEEeccccccceeEee
Q 041570 354 GARNALNASFLQ-IIGESMAS--LKHLSLSYSILNANCTI 390 (394)
Q Consensus 354 ~~~n~l~~g~l~-~~~~~~~~--L~~L~l~~n~l~g~~~~ 390 (394)
+ |.++ .+| ..+..++. ++.|++++|.+.++|.+
T Consensus 172 ~--N~l~--~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 172 S--NKLK--KLPLTDLQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp S--SCCC--CCCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred C--CCCC--ccCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence 8 7777 444 55666665 37788888888877653
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=6.5e-19 Score=172.96 Aligned_cols=191 Identities=20% Similarity=0.243 Sum_probs=160.7
Q ss_pred CCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeeccccccCCCCCCEEEcCCCCCCcccc-ccCCCCcEEEccCcc
Q 041570 128 SNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIEVKGSSKLQSLDLSHNNLNRIIL-SSLTTLSELYLSGMG 206 (394)
Q Consensus 128 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~L~~L~l~~~~ 206 (394)
..+..+.+..+.+.+..+ +..+++|+.|++++|.+.....+..+++|+.|++++|++.+..+ ..+++|+.|++++|.
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENK 98 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCC
Confidence 345556777777775444 56789999999999999875557888999999999999988764 388999999999999
Q ss_pred cCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCc
Q 041570 207 FEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTA 286 (394)
Q Consensus 207 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 286 (394)
+.+ + ..+..+++|++|++++|.+. .++ .+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++
T Consensus 99 l~~-l--~~l~~l~~L~~L~Ls~N~l~--~l~--~l~~l~~L~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 99 IKD-L--SSLKDLKKLKSLSLEHNGIS--DIN--GLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CCC-C--TTSTTCTTCCEEECTTSCCC--CCG--GGGGCTTCSEEECCSSCCCCC----GGGGSCTTCSEEECCSSCCCC
T ss_pred CCC-C--hhhccCCCCCEEEecCCCCC--CCc--cccCCCccCEEECCCCccCCc----hhhcccCCCCEEECcCCcCCC
Confidence 885 3 36889999999999999987 233 588899999999999999874 467889999999999999998
Q ss_pred cchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCccccee
Q 041570 287 TTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGV 335 (394)
Q Consensus 287 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 335 (394)
..| +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+.
T Consensus 168 ~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 168 IVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred chh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 776 88999999999999999863 3588999999999999998853
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=3e-19 Score=150.80 Aligned_cols=155 Identities=14% Similarity=0.205 Sum_probs=117.2
Q ss_pred cCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCC
Q 041570 217 DSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFT 296 (394)
Q Consensus 217 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~ 296 (394)
+.+++|++|++++|.+. .++ .+..+++|++|++++|.++.. +.+..+++|++|++++|.+++..+..++.++
T Consensus 41 ~~l~~L~~L~l~~n~i~--~l~--~l~~l~~L~~L~l~~n~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 112 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT--DLT--GIEYAHNIKDLTINNIHATNY----NPISGLSNLERLRIMGKDVTSDKIPNLSGLT 112 (197)
T ss_dssp HHHHTCCEEEEESSCCS--CCT--TGGGCTTCSEEEEESCCCSCC----GGGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred hhcCCccEEeccCCCcc--ChH--HHhcCCCCCEEEccCCCCCcc----hhhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence 55667788888887765 334 467777888888888866542 3677788888888888888877777788888
Q ss_pred CCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccccccccccCCCcE
Q 041570 297 NLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKH 376 (394)
Q Consensus 297 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~ 376 (394)
+|+.|++++|.+++..|..+..+++|++|++++|.+.+.+|. +..+++|++|++++ |.++ .++ .+..+++|+.
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~--n~i~--~~~-~l~~l~~L~~ 185 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQF--DGVH--DYR-GIEDFPKLNQ 185 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTT--BCCC--CCT-TGGGCSSCCE
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCC--CCCc--ChH-HhccCCCCCE
Confidence 888888888888877788888888888888888874446663 67888888888888 8887 455 6778888889
Q ss_pred Eeccccccce
Q 041570 377 LSLSYSILNA 386 (394)
Q Consensus 377 L~l~~n~l~g 386 (394)
|++++|++.+
T Consensus 186 L~l~~N~i~~ 195 (197)
T 4ezg_A 186 LYAFSQTIGG 195 (197)
T ss_dssp EEECBC----
T ss_pred EEeeCcccCC
Confidence 9988888764
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=6.7e-19 Score=157.98 Aligned_cols=189 Identities=21% Similarity=0.248 Sum_probs=159.3
Q ss_pred CCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeeccccccCCCCCCEEEcCCCCCCcccc-ccCCCCcEEEccCccc
Q 041570 129 NLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIEVKGSSKLQSLDLSHNNLNRIIL-SSLTTLSELYLSGMGF 207 (394)
Q Consensus 129 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~L~~L~l~~~~~ 207 (394)
++..+.+..+.+.+..+ +..+++|++|++++|.+.....+..+++|++|++++|++++..+ ..+++|++|++++|.+
T Consensus 25 ~~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred HHHHHHhcCCCcccccc--hhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcC
Confidence 34445666777665433 45788999999999999875457788999999999999988764 4889999999999999
Q ss_pred CCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCcc
Q 041570 208 EGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTAT 287 (394)
Q Consensus 208 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 287 (394)
++ + ..+..+++|++|++++|++. .++ .+..+++|++|++++|.+++. +.+..+++|++|++++|++++.
T Consensus 103 ~~-~--~~l~~l~~L~~L~L~~n~i~--~~~--~l~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 103 KD-L--SSLKDLKKLKSLSLEHNGIS--DIN--GLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp CC-G--GGGTTCTTCCEEECTTSCCC--CCG--GGGGCTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCCC
T ss_pred CC-C--hhhccCCCCCEEECCCCcCC--CCh--hhcCCCCCCEEEccCCcCCcc----hhhccCCCCCEEEccCCccccc
Confidence 85 3 34899999999999999987 333 688899999999999999874 4678899999999999999987
Q ss_pred chhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccce
Q 041570 288 TTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNG 334 (394)
Q Consensus 288 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 334 (394)
.+ +..+++|+.|++++|.+++ ++ .+..+++|+.|++++|.++.
T Consensus 172 ~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 172 VP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred hh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 65 8899999999999999985 44 48899999999999999874
No 110
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=9.3e-19 Score=161.42 Aligned_cols=235 Identities=20% Similarity=0.216 Sum_probs=179.6
Q ss_pred cEEEcccccCCccchHhhhcCCCCCEEEcCCceeecccc--ccCCCCCCEEEcCCCCCCccccc----cCCCCcE-EEcc
Q 041570 131 KFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIE--VKGSSKLQSLDLSHNNLNRIILS----SLTTLSE-LYLS 203 (394)
Q Consensus 131 ~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~----~l~~L~~-L~l~ 203 (394)
++++.++++++ .+|..+ .+++++|+|++|.++...+ +..+++|++|++++|++.+.++. +++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 57888999888 778766 3689999999999987433 67889999999999999877654 5677665 5666
Q ss_pred CcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCC-CCCCCChhhhhhcCCC-CCCCEEeCcC
Q 041570 204 GMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSG-VGIRDGSELLRSMGSF-PSLKTLFLEA 281 (394)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~l~~~-~~L~~L~l~~ 281 (394)
.|.++. +++..+..+++|++|++++|++. .++...+....++..+++.+ +.+... -+..+..+ ..++.|++++
T Consensus 89 ~N~l~~-l~~~~f~~l~~L~~L~l~~n~l~--~~~~~~~~~~~~l~~l~l~~~~~i~~l--~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 89 ANNLLY-INPEAFQNLPNLQYLLISNTGIK--HLPDVHKIHSLQKVLLDIQDNINIHTI--ERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp ETTCCE-ECTTSBCCCTTCCEEEEEEECCS--SCCCCTTCCBSSCEEEEEESCTTCCEE--CTTSSTTSBSSCEEEECCS
T ss_pred CCcccc-cCchhhhhccccccccccccccc--cCCchhhcccchhhhhhhccccccccc--cccchhhcchhhhhhcccc
Confidence 788874 44488999999999999999987 45554666777888999866 455543 22344554 4689999999
Q ss_pred CCCCccchhhcCCCCCCCEEEcCC-CcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccC
Q 041570 282 NNFTATTTQELHNFTNLEFLNLRH-SSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALN 360 (394)
Q Consensus 282 n~~~~~~~~~l~~~~~L~~L~l~~-n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~ 360 (394)
|+++...+..+ ...+|+.+++.+ |.++...+..|..+++|++|++++|.++ .+|... +.+|+.|.+.++ +.++
T Consensus 164 N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~---~~~L~~L~~l~~-~~l~ 237 (350)
T 4ay9_X 164 NGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYG---LENLKKLRARST-YNLK 237 (350)
T ss_dssp SCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSS---CTTCCEEECTTC-TTCC
T ss_pred ccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhh---hccchHhhhccC-CCcC
Confidence 99996655544 457899999986 5565333456899999999999999998 777633 467788887774 4454
Q ss_pred CccccccccccCCCcEEecccc
Q 041570 361 ASFLQIIGESMASLKHLSLSYS 382 (394)
Q Consensus 361 ~g~l~~~~~~~~~L~~L~l~~n 382 (394)
.+| .+..+++|+.++++++
T Consensus 238 --~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 238 --KLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp --CCC-CTTTCCSCCEEECSCH
T ss_pred --cCC-CchhCcChhhCcCCCC
Confidence 777 4788999999999865
No 111
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.78 E-value=2.2e-20 Score=187.70 Aligned_cols=226 Identities=20% Similarity=0.155 Sum_probs=94.0
Q ss_pred cCHHHHHHHHHhhhhcCCCC--CCCCCCCCCCCCCccceeEecCCCCcEEEEecCCCCCCCCCCCccccccCCCCCCCCE
Q 041570 27 CLEHERFALLRLRHFFSSPS--RLQNWEDEQGDFCQWESVECSNTTGRVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLES 104 (394)
Q Consensus 27 ~~~~~~~al~~~~~~~~~~~--~~~~W~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~ 104 (394)
....+++++++++.+...+. ....|.......+.|.++.++ .++++.+++.++.+...+. ..++.
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~~~~~l~L~~n~~~~~~~-----------~~l~~ 195 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVS--TPLTPKIELFANGKDEANQ-----------ALLQH 195 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceec--CCccceEEeeCCCCCcchh-----------hHhhc
Confidence 34567889999998876543 345675545566788888884 4678888888776543221 22344
Q ss_pred EeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeecccc--ccCCCCCCEEEcC
Q 041570 105 LILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIE--VKGSSKLQSLDLS 182 (394)
Q Consensus 105 L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~ 182 (394)
++|+.+.+. .+++..|.+. ..+..+..++.|+.|+|++|.+.. +| +.
T Consensus 196 l~Ls~~~i~------------------~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~----------- 244 (727)
T 4b8c_D 196 KKLSQYSID------------------EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFN-ISANIF----------- 244 (727)
T ss_dssp ---------------------------------------------CCCCCCEEECTTSCCSC-CCGGGG-----------
T ss_pred CccCccccc------------------Ccccccccee-cChhhhccCCCCcEEECCCCCCCC-CChhhc-----------
Confidence 444444332 2233334333 344555566666666666665543 22 11
Q ss_pred CCCCCccccccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCCh
Q 041570 183 HNNLNRIILSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGS 262 (394)
Q Consensus 183 ~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 262 (394)
.+++|++|+|++|.++ .+| ..++.+++|++|+|++|.+. .+|. .+..+++|++|+|++|.++.
T Consensus 245 ----------~l~~L~~L~Ls~N~l~-~lp-~~~~~l~~L~~L~Ls~N~l~--~lp~-~~~~l~~L~~L~L~~N~l~~-- 307 (727)
T 4b8c_D 245 ----------KYDFLTRLYLNGNSLT-ELP-AEIKNLSNLRVLDLSHNRLT--SLPA-ELGSCFQLKYFYFFDNMVTT-- 307 (727)
T ss_dssp ----------GCCSCSCCBCTTSCCS-CCC-GGGGGGTTCCEEECTTSCCS--SCCS-SGGGGTTCSEEECCSSCCCC--
T ss_pred ----------CCCCCCEEEeeCCcCc-ccC-hhhhCCCCCCEEeCcCCcCC--ccCh-hhcCCCCCCEEECCCCCCCc--
Confidence 2334444444444444 445 55677777777777777765 4554 56777777777777776653
Q ss_pred hhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCC-CCCEEEcCCCcCChhhhh
Q 041570 263 ELLRSMGSFPSLKTLFLEANNFTATTTQELHNFT-NLEFLNLRHSSLDINLLK 314 (394)
Q Consensus 263 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~L~l~~n~l~~~~~~ 314 (394)
+|..+..+++|++|+|++|.+++.+|..+.... .+..+++++|.+++.+|.
T Consensus 308 -lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 308 -LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp -CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred -cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 566667777777777777777766666554321 112355666666665554
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=4.8e-18 Score=145.92 Aligned_cols=153 Identities=21% Similarity=0.270 Sum_probs=112.5
Q ss_pred CEEEcCCCCCCccccccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCC
Q 041570 177 QSLDLSHNNLNRIILSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGV 256 (394)
Q Consensus 177 ~~L~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n 256 (394)
+.++++++.++.....-.++++.|++++|.+++. +...+..+++|++|++++|++. .+.+..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i-~~~~~~~l~~L~~L~Ls~N~i~--~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQIS--ELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECCSSCCC--EECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCc-CHhHhhCCCCCCEEECCCCcCC--CcCHHHhhCCcCCCEEECCCC
Confidence 5677777777665433446788888888887743 3366777888888888888776 344447778888888888888
Q ss_pred CCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccce
Q 041570 257 GIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNG 334 (394)
Q Consensus 257 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 334 (394)
.+++. .+..+..+++|++|++++|++++..|..|..+++|+.|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 91 ~l~~l--~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITEL--PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCC--CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCcc--CHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 88764 33445677888888888888887777778888888888888888886666667778888888888887764
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=2.2e-18 Score=159.54 Aligned_cols=174 Identities=24% Similarity=0.229 Sum_probs=120.7
Q ss_pred CEEEcCCceeeccccccCCCCCCEEEcCCCCCCccccc----cCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCC
Q 041570 155 ISLSLSHNKLEGSIEVKGSSKLQSLDLSHNNLNRIILS----SLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNN 230 (394)
Q Consensus 155 ~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n 230 (394)
++++++++.++. +|..-...++.|++++|++++..+. .+++|++|++++|.+++..+ ..+..+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~-iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS-EAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSS-CCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh-hhccCCCCCCEEECCCC
Confidence 578888887776 5544446678888888888776543 56777788887777774433 56777777888888777
Q ss_pred CCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhc---CCCCCCCEEEcCCCc
Q 041570 231 KGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQEL---HNFTNLEFLNLRHSS 307 (394)
Q Consensus 231 ~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l---~~~~~L~~L~l~~n~ 307 (394)
++. .+++..|..+++|++|++++|.+++. .+..+..+++|++|+|++|++++..+..+ ..+++|+.|+|++|.
T Consensus 99 ~l~--~~~~~~~~~l~~L~~L~L~~N~i~~~--~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 99 HLH--TLDEFLFSDLQALEVLLLYNNHIVVV--DRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CCC--EECTTTTTTCTTCCEEECCSSCCCEE--CTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred cCC--cCCHHHhCCCcCCCEEECCCCcccEE--CHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 775 45555677777777777777777765 45667777777777777777776555555 456777777777777
Q ss_pred CChhhhhchhccCC--CCeEecCCcccce
Q 041570 308 LDINLLKTIASFTS--LKNLSMVSCEVNG 334 (394)
Q Consensus 308 l~~~~~~~l~~~~~--L~~L~l~~n~l~~ 334 (394)
+++..+..+..++. ++.|++++|.+..
T Consensus 175 l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 175 LKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCccCHHHhhhccHhhcceEEecCCCccC
Confidence 77555556666665 3677777776653
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=1.6e-17 Score=143.62 Aligned_cols=155 Identities=22% Similarity=0.207 Sum_probs=85.8
Q ss_pred CCEEEcCCCCCCccccccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCC
Q 041570 176 LQSLDLSHNNLNRIILSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSG 255 (394)
Q Consensus 176 L~~L~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~ 255 (394)
.+.++.+++.++.....-.++|++|++++|.+++..+ ..+..+++|++|++++|++. .++...+..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~--~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEP-GVFDSLINLKELYLGSNQLG--ALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCH-HHhhCccCCcEEECCCCCCC--CcChhhcccCCCcCEEECCC
Confidence 3344444444443332233455555555555554333 45556666666666666653 44444555666666666666
Q ss_pred CCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCccccee
Q 041570 256 VGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGV 335 (394)
Q Consensus 256 n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 335 (394)
|.+++. .+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 98 N~l~~l--~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 98 NQLTVL--PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp SCCCCC--CTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CcCCcc--ChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 666553 3334455666666666666665 4445555666666666666666644444555666666666666665544
Q ss_pred e
Q 041570 336 L 336 (394)
Q Consensus 336 i 336 (394)
.
T Consensus 175 c 175 (229)
T 3e6j_A 175 C 175 (229)
T ss_dssp B
T ss_pred c
Confidence 3
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=7.6e-21 Score=185.56 Aligned_cols=203 Identities=16% Similarity=0.127 Sum_probs=146.7
Q ss_pred cCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceee-------------cccc--ccCCCCCCEEE-cCCCCCCc
Q 041570 125 SRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLE-------------GSIE--VKGSSKLQSLD-LSHNNLNR 188 (394)
Q Consensus 125 ~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~-------------~~~~--~~~~~~L~~L~-l~~n~l~~ 188 (394)
..+++|+.|+|++|.+. .+|..++++++|+.|++++|... +..| +..+++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence 56788999999999987 88999999999999999777521 1111 12223333333 222211
Q ss_pred cccccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhc
Q 041570 189 IILSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSM 268 (394)
Q Consensus 189 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l 268 (394)
.+|+.+.+.+|.++. ++ ...|+.|++++|.+. .+|. +..+++|++|++++|.++. +|..+
T Consensus 423 ------~~L~~l~l~~n~i~~-l~------~~~L~~L~Ls~n~l~--~lp~--~~~l~~L~~L~Ls~N~l~~---lp~~~ 482 (567)
T 1dce_A 423 ------DDLRSKFLLENSVLK-ME------YADVRVLHLAHKDLT--VLCH--LEQLLLVTHLDLSHNRLRA---LPPAL 482 (567)
T ss_dssp ------HHHHHHHHHHHHHHH-HH------HTTCSEEECTTSCCS--SCCC--GGGGTTCCEEECCSSCCCC---CCGGG
T ss_pred ------chhhhhhhhcccccc-cC------ccCceEEEecCCCCC--CCcC--ccccccCcEeecCcccccc---cchhh
Confidence 122233333333321 11 125889999999887 3553 8888999999999998884 78888
Q ss_pred CCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhh-hhchhccCCCCeEecCCcccceeech--hhccCCC
Q 041570 269 GSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINL-LKTIASFTSLKNLSMVSCEVNGVLDG--QGFLNFK 345 (394)
Q Consensus 269 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~l~~n~l~~~ip~--~~~~~~~ 345 (394)
..+++|++|+|++|.+++ +| .++.+++|+.|++++|.+++.. |..++.+++|+.|++++|.+++..|. ..+..++
T Consensus 483 ~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp 560 (567)
T 1dce_A 483 AALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 560 (567)
T ss_dssp GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCT
T ss_pred hcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCc
Confidence 899999999999999987 45 7889999999999999998776 88899999999999999999866543 1344578
Q ss_pred CCcEEEc
Q 041570 346 SLERLDM 352 (394)
Q Consensus 346 ~L~~L~l 352 (394)
+|+.|++
T Consensus 561 ~L~~L~l 567 (567)
T 1dce_A 561 SVSSILT 567 (567)
T ss_dssp TCSEEEC
T ss_pred ccCccCC
Confidence 8998875
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=7.4e-18 Score=142.26 Aligned_cols=152 Identities=16% Similarity=0.319 Sum_probs=114.2
Q ss_pred cCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCC
Q 041570 193 SLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFP 272 (394)
Q Consensus 193 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~ 272 (394)
.+++|++|++++|.+. .++ .+..+++|++|++++|.+. . ++ .+..+++|++|++++|.+++. .+..+..++
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~l~~n~~~--~-~~-~l~~l~~L~~L~l~~n~l~~~--~~~~l~~l~ 112 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT--GIEYAHNIKDLTINNIHAT--N-YN-PISGLSNLERLRIMGKDVTSD--KIPNLSGLT 112 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT--TGGGCTTCSEEEEESCCCS--C-CG-GGTTCTTCCEEEEECTTCBGG--GSCCCTTCT
T ss_pred hcCCccEEeccCCCcc-ChH--HHhcCCCCCEEEccCCCCC--c-ch-hhhcCCCCCEEEeECCccCcc--cChhhcCCC
Confidence 5566777777777766 443 4677888888888888654 2 22 577788888888888888765 566778888
Q ss_pred CCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCc-CChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEE
Q 041570 273 SLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSS-LDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLD 351 (394)
Q Consensus 273 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~ 351 (394)
+|++|++++|.+++..|..+..+++|+.|++++|. ++ .+| .+..+++|++|++++|.+++ ++ .+..+++|++|+
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~--~l~~l~~L~~L~ 187 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR--GIEDFPKLNQLY 187 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT--TGGGCSSCCEEE
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH--HhccCCCCCEEE
Confidence 88888888888887777888888888888888887 54 455 57888888888888888874 44 467788888888
Q ss_pred cCCCCcccC
Q 041570 352 MGGARNALN 360 (394)
Q Consensus 352 l~~~~n~l~ 360 (394)
+++ |.+.
T Consensus 188 l~~--N~i~ 194 (197)
T 4ezg_A 188 AFS--QTIG 194 (197)
T ss_dssp ECB--C---
T ss_pred eeC--cccC
Confidence 888 7765
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=2.9e-18 Score=151.42 Aligned_cols=171 Identities=22% Similarity=0.369 Sum_probs=125.2
Q ss_pred cccCCCCCCEEEcCCCCCCccc-cccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCC
Q 041570 169 EVKGSSKLQSLDLSHNNLNRII-LSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSK 247 (394)
Q Consensus 169 ~~~~~~~L~~L~l~~n~l~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~ 247 (394)
|...+.++..++++.+.+++.. ...+++|++|++++|.++ .++ .+..+++|++|++++|.+. .+++ +..+++
T Consensus 14 pd~~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~L~~N~i~--~~~~--l~~l~~ 86 (263)
T 1xeu_A 14 PDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SLA--GMQFFTNLKELHLSHNQIS--DLSP--LKDLTK 86 (263)
T ss_dssp CSHHHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCC--CCGG--GTTCSS
T ss_pred CCHHHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcc-cch--HHhhCCCCCEEECCCCccC--CChh--hccCCC
Confidence 3334456667777888777654 237788888888888776 343 5777888888888888876 3443 778888
Q ss_pred cCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEec
Q 041570 248 LKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSM 327 (394)
Q Consensus 248 L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l 327 (394)
|++|++++|.+++. +. +.. ++|++|++++|++++. +.+..+++|+.|++++|.+++. + .+..+++|++|++
T Consensus 87 L~~L~L~~N~l~~l---~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L 157 (263)
T 1xeu_A 87 LEELSVNRNRLKNL---NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDL 157 (263)
T ss_dssp CCEEECCSSCCSCC---TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEEC
T ss_pred CCEEECCCCccCCc---Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEEC
Confidence 88888888888763 32 223 7788888888888764 3477888888888888888753 3 5777888888888
Q ss_pred CCcccceeechhhccCCCCCcEEEcCCCCcccC
Q 041570 328 VSCEVNGVLDGQGFLNFKSLERLDMGGARNALN 360 (394)
Q Consensus 328 ~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~ 360 (394)
++|.+++. . .+..+++|+.|++++ |.++
T Consensus 158 ~~N~i~~~--~-~l~~l~~L~~L~l~~--N~~~ 185 (263)
T 1xeu_A 158 HGNEITNT--G-GLTRLKKVNWIDLTG--QKCV 185 (263)
T ss_dssp TTSCCCBC--T-TSTTCCCCCEEEEEE--EEEE
T ss_pred CCCcCcch--H-HhccCCCCCEEeCCC--Cccc
Confidence 88888754 3 577788888888888 7776
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.74 E-value=1.1e-20 Score=184.35 Aligned_cols=122 Identities=17% Similarity=0.212 Sum_probs=81.8
Q ss_pred CcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEe
Q 041570 247 KLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLS 326 (394)
Q Consensus 247 ~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ 326 (394)
.|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++|+.|++++|.+++ +| .++.+++|++|+
T Consensus 442 ~L~~L~Ls~n~l~~---lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~ 514 (567)
T 1dce_A 442 DVRVLHLAHKDLTV---LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELL 514 (567)
T ss_dssp TCSEEECTTSCCSS---CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEE
T ss_pred CceEEEecCCCCCC---CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEE
Confidence 46777777777766 444 666777777777777777 556677777777777777777775 55 667777777777
Q ss_pred cCCcccceee-chhhccCCCCCcEEEcCCCCcccCCcccc---ccccccCCCcEEec
Q 041570 327 MVSCEVNGVL-DGQGFLNFKSLERLDMGGARNALNASFLQ---IIGESMASLKHLSL 379 (394)
Q Consensus 327 l~~n~l~~~i-p~~~~~~~~~L~~L~l~~~~n~l~~g~l~---~~~~~~~~L~~L~l 379 (394)
+++|.+++.. |. .+..+++|+.|++++ |.++ +..| ..+..+++|+.|++
T Consensus 515 Ls~N~l~~~~~p~-~l~~l~~L~~L~L~~--N~l~-~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 515 LCNNRLQQSAAIQ-PLVSCPRLVLLNLQG--NSLC-QEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCSSCCCSSSTTG-GGGGCTTCCEEECTT--SGGG-GSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCCCcH-HHhcCCCCCEEEecC--CcCC-CCccHHHHHHHHCcccCccCC
Confidence 7777777554 55 667777777777777 7776 4333 12334677777653
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=1e-17 Score=140.68 Aligned_cols=132 Identities=18% Similarity=0.218 Sum_probs=85.0
Q ss_pred CEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhh-hcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEE
Q 041570 223 EELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLR-SMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFL 301 (394)
Q Consensus 223 ~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L 301 (394)
++++++++.+. .+|. .+. .++++|++++|.+++. .+. .+..+++|++|++++|++++..|..|..+++|+.|
T Consensus 11 ~~l~~s~~~l~--~ip~-~~~--~~l~~L~l~~n~i~~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGRGLK--EIPR-DIP--LHTTELLLNDNELGRI--SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTTSCCS--SCCS-CCC--TTCSEEECCSCCCCSB--CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CEEEcCCCCcC--cCcc-CCC--CCCCEEECCCCcCCcc--CCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence 56677776664 4554 222 2677777777776653 222 25666677777777777776666667777777777
Q ss_pred EcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCcccc
Q 041570 302 NLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQ 365 (394)
Q Consensus 302 ~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~ 365 (394)
++++|.+++..+..+..+++|++|++++|.+++..|. .+..+++|++|++++ |.+. +..+
T Consensus 84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~--N~l~-c~c~ 143 (192)
T 1w8a_A 84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLNLAS--NPFN-CNCH 143 (192)
T ss_dssp ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECTT--CCBC-CSGG
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH-HhhcCCCCCEEEeCC--CCcc-CcCc
Confidence 7777777766666666677777777777777665555 566666777777777 6666 5444
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=1.4e-17 Score=147.06 Aligned_cols=170 Identities=19% Similarity=0.249 Sum_probs=143.4
Q ss_pred cCCCCCEEEcCCceeeccccccCCCCCCEEEcCCCCCCccc-cccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECC
Q 041570 150 RLSSLISLSLSHNKLEGSIEVKGSSKLQSLDLSHNNLNRII-LSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLS 228 (394)
Q Consensus 150 ~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 228 (394)
++.++..++++++.+++...+..+++|++|++++|.++... ...+++|++|++++|.+++. + . +..+++|++|+++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~-~-~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDL-S-P-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC-G-G-GTTCSSCCEEECC
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCC-h-h-hccCCCCCEEECC
Confidence 35567778889998887555777899999999999988653 23889999999999999854 3 2 8899999999999
Q ss_pred CCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcC
Q 041570 229 NNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSL 308 (394)
Q Consensus 229 ~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 308 (394)
+|++. .++. +.. ++|++|++++|.+++. + .+..+++|++|++++|++++. + .+..+++|+.|++++|.+
T Consensus 94 ~N~l~--~l~~--~~~-~~L~~L~L~~N~l~~~---~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 94 RNRLK--NLNG--IPS-ACLSRLFLDNNELRDT---D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp SSCCS--CCTT--CCC-SSCCEEECCSSCCSBS---G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCC
T ss_pred CCccC--CcCc--ccc-CcccEEEccCCccCCC---h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcC
Confidence 99987 3443 333 8999999999999874 3 588899999999999999876 3 688899999999999999
Q ss_pred ChhhhhchhccCCCCeEecCCccccee
Q 041570 309 DINLLKTIASFTSLKNLSMVSCEVNGV 335 (394)
Q Consensus 309 ~~~~~~~l~~~~~L~~L~l~~n~l~~~ 335 (394)
++. ..+..+++|++|++++|.+++.
T Consensus 163 ~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 163 TNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cch--HHhccCCCCCEEeCCCCcccCC
Confidence 976 6788999999999999999854
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=1.1e-16 Score=128.62 Aligned_cols=126 Identities=16% Similarity=0.150 Sum_probs=57.0
Q ss_pred CcCEEEcCCCCCC-CChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeE
Q 041570 247 KLKRLDLSGVGIR-DGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNL 325 (394)
Q Consensus 247 ~L~~L~l~~n~~~-~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L 325 (394)
+|++|++++|.++ +. +|..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..+++|++|
T Consensus 18 ~l~~L~l~~n~l~~~~--~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 18 DVKELVLDNSRSNEGK--LEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GCSEEECTTCBCBTTB--CCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred cCeEEEccCCcCChhH--HHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 4444444444443 22 333344444444444444444433 334444445555555554444444444444555555
Q ss_pred ecCCccccee-echhhccCCCCCcEEEcCCCCcccCCcccc---ccccccCCCcEEecc
Q 041570 326 SMVSCEVNGV-LDGQGFLNFKSLERLDMGGARNALNASFLQ---IIGESMASLKHLSLS 380 (394)
Q Consensus 326 ~l~~n~l~~~-ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~---~~~~~~~~L~~L~l~ 380 (394)
++++|.+++. .+. .+..+++|++|++++ |.++ +..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~-~~~~l~~L~~L~l~~--N~l~-~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIE-PLKKLENLKSLDLFN--CEVT-NLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHG-GGGGCTTCCEEECTT--CGGG-GSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHH-HHhhCCCCCEEeCcC--Cccc-chHHHHHHHHHHCCCcccccCC
Confidence 5555544421 112 344455555555555 4444 2211 244445555555543
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=4.3e-16 Score=142.27 Aligned_cols=261 Identities=14% Similarity=0.104 Sum_probs=157.4
Q ss_pred CCCCCEEeccCCcCCCccccchhhhhcC-CCCCcEEEcccccCC--ccchHhhhcCCCCCEEEcCCceeeccccccC---
Q 041570 99 FQQLESLILSNNSIAGCVENEGLEMLSR-LSNLKFLDLRMNLFK--NSISSSLARLSSLISLSLSHNKLEGSIEVKG--- 172 (394)
Q Consensus 99 l~~L~~L~l~~~~l~~~~~~~~~~~l~~-l~~L~~L~L~~n~~~--~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~--- 172 (394)
+++++.|.++++ +....+..+.. +++|++|||++|.+. ..... .++.++.+.+..+.+.. -.+..
T Consensus 24 ~~~l~~L~l~g~-----i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~~-~aF~~~~~ 94 (329)
T 3sb4_A 24 ANSITHLTLTGK-----LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVPA-YAFSNVVN 94 (329)
T ss_dssp HHHCSEEEEEEE-----ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEECT-TTTEEEET
T ss_pred hCceeEEEEecc-----ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccccCH-HHhccccc
Confidence 456777777653 22222233444 677777888777765 11111 12223444444443321 22444
Q ss_pred -----CCCCCEEEcCCCCCCcccc---ccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCC--CCCcccCcCC
Q 041570 173 -----SSKLQSLDLSHNNLNRIIL---SSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKG--INNFVVPQDY 242 (394)
Q Consensus 173 -----~~~L~~L~l~~n~l~~~~~---~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~--~~~~~~~~~~ 242 (394)
+++|+.|++.. .++.... ..+++|+.+++.+|.+. .++...|..+.++.++....+.. ....+....|
T Consensus 95 ~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f 172 (329)
T 3sb4_A 95 GVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAF 172 (329)
T ss_dssp TEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCE
T ss_pred ccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhcccccccccc
Confidence 67777777766 5544322 25667777777776665 34445566655555555444211 0011111223
Q ss_pred CCCCCcC-EEEc-------------------------CCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCC
Q 041570 243 RGLSKLK-RLDL-------------------------SGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFT 296 (394)
Q Consensus 243 ~~l~~L~-~L~l-------------------------~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~ 296 (394)
..+..|+ .+.+ .++-.... .......+++|+++++++|+++...+..|.+++
T Consensus 173 ~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~--~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~ 250 (329)
T 3sb4_A 173 IEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNAD--FKLIRDYMPNLVSLDISKTNATTIPDFTFAQKK 250 (329)
T ss_dssp EESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHH--HHHHHHHCTTCCEEECTTBCCCEECTTTTTTCT
T ss_pred ccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHH--HHHHHHhcCCCeEEECCCCCcceecHhhhhCCC
Confidence 3333333 2222 22110000 110111378899999999999888888899999
Q ss_pred CCCEEEcCCCcCChhhhhchhccCCCC-eEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCcccc-ccccccCCC
Q 041570 297 NLEFLNLRHSSLDINLLKTIASFTSLK-NLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQ-IIGESMASL 374 (394)
Q Consensus 297 ~L~~L~l~~n~l~~~~~~~l~~~~~L~-~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~-~~~~~~~~L 374 (394)
+|+.+++.+| ++...+.+|.++++|+ .+++.+ .++ .|+...|.++++|+.+++++ |.++ .|+ ..|..|++|
T Consensus 251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~--n~i~--~I~~~aF~~~~~L 323 (329)
T 3sb4_A 251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATG--DKIT--TLGDELFGNGVPS 323 (329)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECS--SCCC--EECTTTTCTTCCC
T ss_pred CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeCC--CccC--ccchhhhcCCcch
Confidence 9999999988 6655566789999999 999988 666 67766899999999999988 8887 666 688899999
Q ss_pred cEEec
Q 041570 375 KHLSL 379 (394)
Q Consensus 375 ~~L~l 379 (394)
+.++.
T Consensus 324 ~~ly~ 328 (329)
T 3sb4_A 324 KLIYK 328 (329)
T ss_dssp CEEEC
T ss_pred hhhcc
Confidence 98863
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=2.7e-16 Score=126.31 Aligned_cols=129 Identities=23% Similarity=0.279 Sum_probs=78.7
Q ss_pred CCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCC
Q 041570 220 SNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLE 299 (394)
Q Consensus 220 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 299 (394)
++|++|++++|.+..+.++. .+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI----ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC----TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred ccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc----hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 45666666666654334443 556666666666666666552 4455666666666666666665566555566667
Q ss_pred EEEcCCCcCChh-hhhchhccCCCCeEecCCcccceeec--hhhccCCCCCcEEEcC
Q 041570 300 FLNLRHSSLDIN-LLKTIASFTSLKNLSMVSCEVNGVLD--GQGFLNFKSLERLDMG 353 (394)
Q Consensus 300 ~L~l~~n~l~~~-~~~~l~~~~~L~~L~l~~n~l~~~ip--~~~~~~~~~L~~L~l~ 353 (394)
.|++++|.+++. .+..+..+++|++|++++|.+++..+ ...+..+++|++|+++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777766666652 34556666777777777776664433 1256666677777665
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=4.5e-16 Score=130.62 Aligned_cols=114 Identities=18% Similarity=0.201 Sum_probs=66.4
Q ss_pred CCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCE
Q 041570 221 NLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEF 300 (394)
Q Consensus 221 ~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 300 (394)
++++|++++|.+. +..+...+..+++|++|++++|.+++. .|..+..+++|++|++++|++++..+..|..+++|+.
T Consensus 30 ~l~~L~l~~n~i~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 106 (192)
T 1w8a_A 30 HTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGI--EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT 106 (192)
T ss_dssp TCSEEECCSCCCC-SBCCSCSGGGCTTCCEEECCSSCCCCB--CTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCE
T ss_pred CCCEEECCCCcCC-ccCCccccccCCCCCEEECCCCCCCCc--CHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence 5556666666554 222212355566666666666666554 4555556666666666666666555555666666666
Q ss_pred EEcCCCcCChhhhhchhccCCCCeEecCCcccceeec
Q 041570 301 LNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLD 337 (394)
Q Consensus 301 L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip 337 (394)
|++++|.+++..|..+..+++|++|++++|.+.+..+
T Consensus 107 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 107 LNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp EECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred EECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 6666666665556666666666666666666655544
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=3.9e-16 Score=129.29 Aligned_cols=128 Identities=18% Similarity=0.180 Sum_probs=69.5
Q ss_pred CEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEE
Q 041570 223 EELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLN 302 (394)
Q Consensus 223 ~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 302 (394)
+.++++++++. .+|. . ..++|++|++++|.+++. .+..+..+++|++|++++|.+++..+..+..+++|+.|+
T Consensus 10 ~~l~~~~~~l~--~~p~-~--~~~~l~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 10 TEIRCNSKGLT--SVPT-G--IPSSATRLELESNKLQSL--PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY 82 (177)
T ss_dssp TEEECCSSCCS--SCCT-T--CCTTCSEEECCSSCCCCC--CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CEEEecCCCCc--cCCC-C--CCCCCcEEEeCCCcccEe--CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence 45555555554 3332 1 124566666666665543 333445556666666666666555555555566666666
Q ss_pred cCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccC
Q 041570 303 LRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALN 360 (394)
Q Consensus 303 l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~ 360 (394)
+++|.+++..+..+..+++|++|++++|.++ .+|...+..+++|++|++++ |.+.
T Consensus 83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~--N~~~ 137 (177)
T 2o6r_A 83 LHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHT--NPWD 137 (177)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCS--SCBC
T ss_pred CCCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecC--CCee
Confidence 6666665444444555556666666666555 33332445555566666665 5555
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=1.2e-16 Score=131.20 Aligned_cols=135 Identities=25% Similarity=0.277 Sum_probs=82.5
Q ss_pred CCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCC
Q 041570 219 LSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNL 298 (394)
Q Consensus 219 l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L 298 (394)
.++|++|++++|.+..+.++. .+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~-~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEG-LTAEFVNLEFLSLINVGLISV----SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSS-CCGGGGGCCEEEEESSCCCCC----SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred cccCCEEECCCCCCChhhHHH-HHHhCCCCCEEeCcCCCCCCh----hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 356777777777665344544 456666777777777766552 455666667777777776666555555556666
Q ss_pred CEEEcCCCcCChh-hhhchhccCCCCeEecCCcccceeec--hhhccCCCCCcEEEcCCCCcccC
Q 041570 299 EFLNLRHSSLDIN-LLKTIASFTSLKNLSMVSCEVNGVLD--GQGFLNFKSLERLDMGGARNALN 360 (394)
Q Consensus 299 ~~L~l~~n~l~~~-~~~~l~~~~~L~~L~l~~n~l~~~ip--~~~~~~~~~L~~L~l~~~~n~l~ 360 (394)
+.|++++|.+++. .+..+..+++|++|++++|.+++..+ ...+..+++|++|++++ |.+.
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~--n~~~ 160 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD--REDQ 160 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE--TTSC
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC--CChh
Confidence 6677766666642 22456666666666666666663333 02455666666666666 5544
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=2.9e-16 Score=128.82 Aligned_cols=138 Identities=25% Similarity=0.224 Sum_probs=114.3
Q ss_pred cCCCCcEEEccCcccC-CccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCC
Q 041570 193 SLTTLSELYLSGMGFE-GTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSF 271 (394)
Q Consensus 193 ~l~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~ 271 (394)
..++|++|++++|.++ +.+| ..+..+++|++|++++|.+. + + ..+..+++|++|++++|.+++. +|..+..+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~-~~~~~l~~L~~L~l~~n~l~-~-~--~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l 94 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIE-GLTAEFVNLEFLSLINVGLI-S-V--SNLPKLPKLKKLELSENRIFGG--LDMLAEKL 94 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCS-SCCGGGGGCCEEEEESSCCC-C-C--SSCCCCSSCCEEEEESCCCCSC--CCHHHHHC
T ss_pred CcccCCEEECCCCCCChhhHH-HHHHhCCCCCEEeCcCCCCC-C-h--hhhccCCCCCEEECcCCcCchH--HHHHHhhC
Confidence 4467788888888776 5666 56788899999999999987 3 3 3788999999999999999886 67777778
Q ss_pred CCCCEEeCcCCCCCccc-hhhcCCCCCCCEEEcCCCcCChhhh---hchhccCCCCeEecCCcccceeech
Q 041570 272 PSLKTLFLEANNFTATT-TQELHNFTNLEFLNLRHSSLDINLL---KTIASFTSLKNLSMVSCEVNGVLDG 338 (394)
Q Consensus 272 ~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~l~~~~~---~~l~~~~~L~~L~l~~n~l~~~ip~ 338 (394)
++|++|++++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+. ++|.
T Consensus 95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 99999999999998753 3778899999999999999986554 47889999999999999887 5554
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=4.4e-16 Score=130.69 Aligned_cols=127 Identities=21% Similarity=0.263 Sum_probs=82.9
Q ss_pred CEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEE
Q 041570 223 EELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLN 302 (394)
Q Consensus 223 ~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 302 (394)
+.++++++.+. .+|. .+ .++|++|++++|.++. +|..+..+++|++|++++|.+++..+..|..+++|+.|+
T Consensus 13 ~~l~~~~~~l~--~ip~-~~--~~~l~~L~L~~n~i~~---ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ 84 (193)
T 2wfh_A 13 TVVRCSNKGLK--VLPK-GI--PRDVTELYLDGNQFTL---VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI 84 (193)
T ss_dssp TEEECTTSCCS--SCCS-CC--CTTCCEEECCSSCCCS---CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCCC--cCCC-CC--CCCCCEEECCCCcCch---hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEE
Confidence 45667766664 4443 22 2467777777777664 456666677777777777777766666677777777777
Q ss_pred cCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccC
Q 041570 303 LRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALN 360 (394)
Q Consensus 303 l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~ 360 (394)
+++|.+++..+..|..+++|++|++++|.++ .+|...+..+++|+.|++++ |.+.
T Consensus 85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~--N~~~ 139 (193)
T 2wfh_A 85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGA--NPLY 139 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCS--SCEE
T ss_pred CCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCC--CCee
Confidence 7777777665666666777777777777766 44443566666777777776 6654
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.63 E-value=5.2e-17 Score=163.28 Aligned_cols=188 Identities=15% Similarity=0.109 Sum_probs=98.9
Q ss_pred CCCCEEEcCCCCCCccccccCCCCcEEEccCcccCC--------ccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCC
Q 041570 174 SKLQSLDLSHNNLNRIILSSLTTLSELYLSGMGFEG--------TFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGL 245 (394)
Q Consensus 174 ~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~--------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l 245 (394)
+.++.|++..|.+...... .++.++|+.+.+.+ .++...+..++.|+.|+|++|.+. .++. .+..+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~---~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~--~l~~-~~~~l 246 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQA---LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF--NISA-NIFKY 246 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS--CCCG-GGGGC
T ss_pred CccceEEeeCCCCCcchhh---HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC--CCCh-hhcCC
Confidence 5577777777776664222 22333333333221 122356777778888888888765 4554 44577
Q ss_pred CCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeE
Q 041570 246 SKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNL 325 (394)
Q Consensus 246 ~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L 325 (394)
++|++|+|++|.++. +|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..|+.+++|++|
T Consensus 247 ~~L~~L~Ls~N~l~~---lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L 321 (727)
T 4b8c_D 247 DFLTRLYLNGNSLTE---LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFL 321 (727)
T ss_dssp CSCSCCBCTTSCCSC---CCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCE
T ss_pred CCCCEEEeeCCcCcc---cChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEE
Confidence 778888888887773 6777777788888888888877 55777777788888888888776 667777778888888
Q ss_pred ecCCcccceeechhhccCCC-CCcEEEcCCCCcccCCccccccccccCCCcEEecccc
Q 041570 326 SMVSCEVNGVLDGQGFLNFK-SLERLDMGGARNALNASFLQIIGESMASLKHLSLSYS 382 (394)
Q Consensus 326 ~l~~n~l~~~ip~~~~~~~~-~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n 382 (394)
+|++|.+++.+|. .+.... .+..+++++ |.++ |.+|. .|+.|+++.|
T Consensus 322 ~L~~N~l~~~~p~-~~~~~~~~~~~l~l~~--N~l~-~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 322 GVEGNPLEKQFLK-ILTEKSVTGLIFYLRD--NRPE-IPLPH------ERRFIEINTD 369 (727)
T ss_dssp ECTTSCCCSHHHH-HHHHHHHHHHHHHHHH--CCCC-CCCCC------C---------
T ss_pred eCCCCccCCCChH-HHhhcchhhhHHhhcc--Cccc-CcCcc------ccceeEeecc
Confidence 8888888777776 443221 123466777 7777 77764 3455666655
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=1.3e-14 Score=119.96 Aligned_cols=131 Identities=19% Similarity=0.205 Sum_probs=68.4
Q ss_pred CEEEcCCCCCCccccccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCC
Q 041570 177 QSLDLSHNNLNRIILSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGV 256 (394)
Q Consensus 177 ~~L~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n 256 (394)
+.+++++++++.......++|++|++++|.+++. +...++.+++|++|++++|.+. .+++..+..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQ--SLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCC--CCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCccCCCCCCCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcce--EeChhHccCCCccCEEECCCC
Confidence 4444444444443322334555555555555432 2244555566666666666554 333334555566666666666
Q ss_pred CCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhh
Q 041570 257 GIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINL 312 (394)
Q Consensus 257 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 312 (394)
.+++. .+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..
T Consensus 87 ~l~~~--~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 87 KLQSL--PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCCC--CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred Ccccc--CHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 65553 3333455556666666666665544444555556666666666555443
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.60 E-value=1.7e-15 Score=125.23 Aligned_cols=129 Identities=22% Similarity=0.212 Sum_probs=66.6
Q ss_pred hcCCCCCCEEECCCCCCCCCcccCcCCCCCC-CcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCC
Q 041570 216 FDSLSNLEELYLSNNKGINNFVVPQDYRGLS-KLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHN 294 (394)
Q Consensus 216 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~ 294 (394)
+.++++|++|++++|.+. .++ .+..+. +|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+..
T Consensus 15 ~~~~~~L~~L~l~~n~l~--~i~--~~~~~~~~L~~L~Ls~N~l~~---~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 86 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP--VIE--NLGATLDQFDAIDFSDNEIRK---L-DGFPLLRRLKTLLVNNNRICRIGEGLDQA 86 (176)
T ss_dssp EECTTSCEEEECTTSCCC--SCC--CGGGGTTCCSEEECCSSCCCE---E-CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred cCCcCCceEEEeeCCCCc--hhH--HhhhcCCCCCEEECCCCCCCc---c-cccccCCCCCEEECCCCcccccCcchhhc
Confidence 344555666666666554 222 222222 56666666665554 2 34455555666666666555444333455
Q ss_pred CCCCCEEEcCCCcCChhhhh--chhccCCCCeEecCCcccceeechh---hccCCCCCcEEEcCC
Q 041570 295 FTNLEFLNLRHSSLDINLLK--TIASFTSLKNLSMVSCEVNGVLDGQ---GFLNFKSLERLDMGG 354 (394)
Q Consensus 295 ~~~L~~L~l~~n~l~~~~~~--~l~~~~~L~~L~l~~n~l~~~ip~~---~~~~~~~L~~L~l~~ 354 (394)
+++|+.|++++|.++ .+|. .+..+++|++|++++|.++ .+|.. .+..+++|++||+++
T Consensus 87 l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 87 LPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp CTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEE
T ss_pred CCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCc
Confidence 555555555555554 2333 4555555555555555554 33431 244555555555555
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=9.6e-15 Score=122.52 Aligned_cols=128 Identities=19% Similarity=0.286 Sum_probs=91.8
Q ss_pred cEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEE
Q 041570 198 SELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTL 277 (394)
Q Consensus 198 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L 277 (394)
+.++++++.++ .+| ..+ .++|++|++++|.+. .++ ..+..+++|++|++++|.+++. .+..+..+++|++|
T Consensus 13 ~~l~~~~~~l~-~ip-~~~--~~~l~~L~L~~n~i~--~ip-~~~~~l~~L~~L~Ls~N~i~~i--~~~~f~~l~~L~~L 83 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLP-KGI--PRDVTELYLDGNQFT--LVP-KELSNYKHLTLIDLSNNRISTL--SNQSFSNMTQLLTL 83 (193)
T ss_dssp TEEECTTSCCS-SCC-SCC--CTTCCEEECCSSCCC--SCC-GGGGGCTTCCEEECCSSCCCCC--CTTTTTTCTTCCEE
T ss_pred CEEEcCCCCCC-cCC-CCC--CCCCCEEECCCCcCc--hhH-HHhhcccCCCEEECCCCcCCEe--CHhHccCCCCCCEE
Confidence 56777777766 455 222 356778888877775 455 3677777888888888877765 45567777778888
Q ss_pred eCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccce
Q 041570 278 FLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNG 334 (394)
Q Consensus 278 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 334 (394)
++++|++++..+..|..+++|+.|++++|.++...+..+..+++|++|++++|.+..
T Consensus 84 ~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 84 ILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 888888777777777777788888888887775555567777788888888777654
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.59 E-value=2.3e-15 Score=137.50 Aligned_cols=103 Identities=16% Similarity=0.089 Sum_probs=81.7
Q ss_pred CCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCC-EEEcCCCcCChhhhhchhccCCCC
Q 041570 245 LSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLE-FLNLRHSSLDINLLKTIASFTSLK 323 (394)
Q Consensus 245 l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~-~L~l~~n~l~~~~~~~l~~~~~L~ 323 (394)
+++|+.+++++|.++.. -...|..+++|+++++.+| ++...+.+|.++++|+ .+++.+ .++...+.+|.+|++|+
T Consensus 225 ~~~L~~l~L~~n~i~~I--~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTI--PDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEE--CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCCccee--cHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence 67888888888877764 3356778888888888887 7767777888888888 888887 66655567788888999
Q ss_pred eEecCCcccceeechhhccCCCCCcEEEc
Q 041570 324 NLSMVSCEVNGVLDGQGFLNFKSLERLDM 352 (394)
Q Consensus 324 ~L~l~~n~l~~~ip~~~~~~~~~L~~L~l 352 (394)
.+++++|.++ .|+...|.++++|+.++.
T Consensus 301 ~l~l~~n~i~-~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 301 YVLATGDKIT-TLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEECSSCCC-EECTTTTCTTCCCCEEEC
T ss_pred EEEeCCCccC-ccchhhhcCCcchhhhcc
Confidence 9998888888 666668888888888764
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1.4e-14 Score=119.72 Aligned_cols=104 Identities=12% Similarity=0.061 Sum_probs=45.4
Q ss_pred CCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeech-hhccCCCCCcEEE
Q 041570 273 SLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDG-QGFLNFKSLERLD 351 (394)
Q Consensus 273 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~-~~~~~~~~L~~L~ 351 (394)
+|++|++++|.+++. ..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+. .+|. ..+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 444444444444433 33444444444444444444322222344444444444444443 2332 1334444444444
Q ss_pred cCCCCcccCCcccccc----ccccCCCcEEeccccc
Q 041570 352 MGGARNALNASFLQII----GESMASLKHLSLSYSI 383 (394)
Q Consensus 352 l~~~~n~l~~g~l~~~----~~~~~~L~~L~l~~n~ 383 (394)
+++ |.++ .+|.. +..+++|+.||+++|.
T Consensus 120 l~~--N~i~--~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 120 ILR--NPVT--NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCS--SGGG--GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ecC--CCCC--CcHhHHHHHHHHCCccceeCCCcCC
Confidence 444 4443 33332 4444444444444443
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.54 E-value=7.8e-13 Score=123.50 Aligned_cols=263 Identities=14% Similarity=0.188 Sum_probs=177.3
Q ss_pred CCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeec--cccccCCC
Q 041570 97 TPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEG--SIEVKGSS 174 (394)
Q Consensus 97 ~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~ 174 (394)
..+..++.+.+.++ ++ .++. .+|.++ +|+.+.+..+ +...-...|.+ ++|+.+.+.. .+.. .-.+..+.
T Consensus 110 ~~~~~l~~i~ip~~-i~-~I~~---~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~ 180 (401)
T 4fdw_A 110 EILKGYNEIILPNS-VK-SIPK---DAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCY 180 (401)
T ss_dssp EECSSCSEEECCTT-CC-EECT---TTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCT
T ss_pred EecCCccEEEECCc-cC-EehH---hhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcc
Confidence 34466777776543 32 2222 225554 6888887765 55333445666 4688888875 3332 12266778
Q ss_pred CCCEEEcCCCCCCccccc--cCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEE
Q 041570 175 KLQSLDLSHNNLNRIILS--SLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLD 252 (394)
Q Consensus 175 ~L~~L~l~~n~l~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~ 252 (394)
+|+.+++..|.++..... ..++|+.+.+..+ +. .++...|.++++|+.+.+..+ + ..+....|.+ .+|+.+.
T Consensus 181 ~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l--~~I~~~aF~~-~~L~~i~ 254 (401)
T 4fdw_A 181 NLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-V--STIGQEAFRE-SGITTVK 254 (401)
T ss_dssp TCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-C--CEECTTTTTT-CCCSEEE
T ss_pred cCCeeecCCCcceEechhhEeecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-c--cCcccccccc-CCccEEE
Confidence 888888887777665433 4567888888744 33 455577888888999988875 3 3566666777 6888888
Q ss_pred cCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCC-----ccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEec
Q 041570 253 LSGVGIRDGSELLRSMGSFPSLKTLFLEANNFT-----ATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSM 327 (394)
Q Consensus 253 l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~-----~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l 327 (394)
+.++ ++.. -...|..+++|+.+++.++.+. ...+..|.+|++|+.+++.+ .++......|.+|++|+.+.+
T Consensus 255 lp~~-i~~I--~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 255 LPNG-VTNI--ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp EETT-CCEE--CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEE
T ss_pred eCCC-ccEE--ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEE
Confidence 8543 4432 2456778888999998887664 35567888889999999984 466445667888899999999
Q ss_pred CCcccceeechhhccCCCCCcEEEcCCCCcccCCccccccccccC-CCcEEecccccc
Q 041570 328 VSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMA-SLKHLSLSYSIL 384 (394)
Q Consensus 328 ~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~-~L~~L~l~~n~l 384 (394)
..+ ++ .|....|.++ +|+.+++.+ |... ...+..|..++ +++.|.+..+.+
T Consensus 331 p~~-l~-~I~~~aF~~~-~L~~l~l~~--n~~~-~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 331 PAN-VT-QINFSAFNNT-GIKEVKVEG--TTPP-QVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CTT-CC-EECTTSSSSS-CCCEEEECC--SSCC-BCCCSSCCCSCTTCCEEEECGGGH
T ss_pred Ccc-cc-EEcHHhCCCC-CCCEEEEcC--CCCc-ccccccccCCCCCccEEEeCHHHH
Confidence 655 55 6666688888 899999988 7766 33335666664 788888877643
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=9.5e-14 Score=113.92 Aligned_cols=106 Identities=21% Similarity=0.274 Sum_probs=81.0
Q ss_pred CcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEe
Q 041570 247 KLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLS 326 (394)
Q Consensus 247 ~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ 326 (394)
..+++++++|.++. +|..+ .++|++|++++|++++..|..|..+++|+.|++++|.+++..+..|..+++|++|+
T Consensus 10 ~~~~l~~s~n~l~~---ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 10 SGTTVDCSGKSLAS---VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp ETTEEECTTSCCSS---CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEEeCCCCcCc---cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence 45678888888776 45544 36788888888888887777888888888888888888866666677888888888
Q ss_pred cCCcccceeechhhccCCCCCcEEEcCCCCcccC
Q 041570 327 MVSCEVNGVLDGQGFLNFKSLERLDMGGARNALN 360 (394)
Q Consensus 327 l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~ 360 (394)
+++|.+++ +|...+..+++|++|++++ |.++
T Consensus 85 L~~N~l~~-~~~~~~~~l~~L~~L~L~~--N~~~ 115 (170)
T 3g39_A 85 LNDNQLKS-IPRGAFDNLKSLTHIWLLN--NPWD 115 (170)
T ss_dssp CCSSCCCC-CCTTTTTTCTTCCEEECCS--SCBC
T ss_pred CCCCccCE-eCHHHhcCCCCCCEEEeCC--CCCC
Confidence 88888874 4443677788888888888 7776
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.48 E-value=2.5e-12 Score=120.13 Aligned_cols=247 Identities=10% Similarity=0.102 Sum_probs=184.5
Q ss_pred cccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCceeecccc-
Q 041570 91 LNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHNKLEGSIE- 169 (394)
Q Consensus 91 l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~- 169 (394)
+....|..+ +|+.+.+..+ ++ .+.. .+|.+ .+|+.+.+.. .+...-...|.+|++|+.+++..|.++....
T Consensus 127 I~~~aF~~~-~L~~i~l~~~-i~-~I~~---~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~ 198 (401)
T 4fdw_A 127 IPKDAFRNS-QIAKVVLNEG-LK-SIGD---MAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAS 198 (401)
T ss_dssp ECTTTTTTC-CCSEEECCTT-CC-EECT---TTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTT
T ss_pred ehHhhcccC-CccEEEeCCC-cc-EECH---HhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechh
Confidence 445567764 7999999776 43 3333 23666 4699999986 5664555689999999999999998876322
Q ss_pred ccCCCCCCEEEcCCCCCCccc---cccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCCCCCC
Q 041570 170 VKGSSKLQSLDLSHNNLNRII---LSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDYRGLS 246 (394)
Q Consensus 170 ~~~~~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~ 246 (394)
...+.+|+.+.+..+ +.... ...+++|+.+++..+ ++ .++...|.+ .+|+.+.+..+ +. .++...|.+++
T Consensus 199 aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp~~-i~--~I~~~aF~~c~ 271 (401)
T 4fdw_A 199 TFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLPNG-VT--NIASRAFYYCP 271 (401)
T ss_dssp TTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEETT-CC--EECTTTTTTCT
T ss_pred hEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeCCC-cc--EEChhHhhCCC
Confidence 333689999999854 44332 337889999999875 33 455566777 78999999544 43 67777999999
Q ss_pred CcCEEEcCCCCCC-----CChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCC
Q 041570 247 KLKRLDLSGVGIR-----DGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTS 321 (394)
Q Consensus 247 ~L~~L~l~~n~~~-----~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 321 (394)
+|+.+++.++.+. .. -...|..+++|+.+++.. .++.....+|.++++|+.+.+..+ ++..-..+|.++ +
T Consensus 272 ~L~~l~l~~~~~~~~~~~~I--~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~ 346 (401)
T 4fdw_A 272 ELAEVTTYGSTFNDDPEAMI--HPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-G 346 (401)
T ss_dssp TCCEEEEESSCCCCCTTCEE--CTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-C
T ss_pred CCCEEEeCCccccCCcccEE--CHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-C
Confidence 9999999988664 22 245688899999999994 577677789999999999999665 654556778899 9
Q ss_pred CCeEecCCcccceeechhhccCCC-CCcEEEcCCCCcccC
Q 041570 322 LKNLSMVSCEVNGVLDGQGFLNFK-SLERLDMGGARNALN 360 (394)
Q Consensus 322 L~~L~l~~n~l~~~ip~~~~~~~~-~L~~L~l~~~~n~l~ 360 (394)
|+.+++.+|... .++...+..++ +++.|.+.. +.+.
T Consensus 347 L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l~vp~--~~~~ 383 (401)
T 4fdw_A 347 IKEVKVEGTTPP-QVFEKVWYGFPDDITVIRVPA--ESVE 383 (401)
T ss_dssp CCEEEECCSSCC-BCCCSSCCCSCTTCCEEEECG--GGHH
T ss_pred CCEEEEcCCCCc-ccccccccCCCCCccEEEeCH--HHHH
Confidence 999999999877 55554777774 788999987 5443
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=2e-16 Score=133.58 Aligned_cols=150 Identities=15% Similarity=0.221 Sum_probs=93.8
Q ss_pred cCCCCcEEEccCcccCCccCh-----hhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhh
Q 041570 193 SLTTLSELYLSGMGFEGTFDV-----QEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRS 267 (394)
Q Consensus 193 ~l~~L~~L~l~~~~~~~~~~~-----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 267 (394)
....++.+++..+.+.+.++. ..+..+++|++|++++|.+. + ++ .+..+++|++|++++|.++. +|..
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~-l~--~~~~l~~L~~L~l~~n~l~~---l~~~ 88 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-K-IS--SLSGMENLRILSLGRNLIKK---IENL 88 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-C-CC--CHHHHTTCCEEEEEEEEECS---CSSH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-c-cc--ccccCCCCCEEECCCCCccc---ccch
Confidence 344566666666666655541 25677777777777777765 2 43 56666777777777777664 4545
Q ss_pred cCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhh-hchhccCCCCeEecCCcccceeech--------
Q 041570 268 MGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLL-KTIASFTSLKNLSMVSCEVNGVLDG-------- 338 (394)
Q Consensus 268 l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~ip~-------- 338 (394)
+..+++|++|++++|++++. | .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.+.+|.
T Consensus 89 ~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~ 166 (198)
T 1ds9_A 89 DAVADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYR 166 (198)
T ss_dssp HHHHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHH
T ss_pred hhcCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHH
Confidence 55556677777777777653 3 45666677777777777764222 3566677777777777776655443
Q ss_pred -hhccCCCCCcEEE
Q 041570 339 -QGFLNFKSLERLD 351 (394)
Q Consensus 339 -~~~~~~~~L~~L~ 351 (394)
..+..+++|+.||
T Consensus 167 ~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 167 IEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHCSSCSEEC
T ss_pred HHHHHhCCCcEEEC
Confidence 1245566666665
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=3.8e-16 Score=131.79 Aligned_cols=151 Identities=19% Similarity=0.188 Sum_probs=86.7
Q ss_pred cCCCCCCEEECCCCCCCCCcccC-----cCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhh
Q 041570 217 DSLSNLEELYLSNNKGINNFVVP-----QDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQE 291 (394)
Q Consensus 217 ~~l~~L~~L~l~~n~~~~~~~~~-----~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~ 291 (394)
.....++.+++..+.+. +.++. ..+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..
T Consensus 15 ~~~~~l~~l~l~~~~l~-~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~---l~-~~~~l~~L~~L~l~~n~l~-~l~~~ 88 (198)
T 1ds9_A 15 EERKSVVATEAEKVELH-GMIPPIEKMDATLSTLKACKHLALSTNNIEK---IS-SLSGMENLRILSLGRNLIK-KIENL 88 (198)
T ss_dssp HHTTCCCCTTCSEEECC-BCCTTCCCCHHHHHHTTTCSEEECSEEEESC---CC-CHHHHTTCCEEEEEEEEEC-SCSSH
T ss_pred HhcccccCcchheeEec-cccCcHhhhhHHHhcCCCCCEEECCCCCCcc---cc-ccccCCCCCEEECCCCCcc-cccch
Confidence 33444555555555444 33321 145556667777777766665 33 4555666777777777666 34444
Q ss_pred cCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccccc-----
Q 041570 292 LHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQI----- 366 (394)
Q Consensus 292 l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~----- 366 (394)
+..+++|+.|++++|.+++ +| .+..+++|++|++++|.+++..+...+..+++|++|++++ |.+. +.+|.
T Consensus 89 ~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~--N~l~-~~~~~~~~~~ 163 (198)
T 1ds9_A 89 DAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG--NPLY-NDYKENNATS 163 (198)
T ss_dssp HHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECS--CHHH-HHHHTTTTHH
T ss_pred hhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecC--Cccc-cccccccchH
Confidence 5555667777777776664 33 4566666777777777666321112456666677777766 6665 44333
Q ss_pred -----cccccCCCcEEe
Q 041570 367 -----IGESMASLKHLS 378 (394)
Q Consensus 367 -----~~~~~~~L~~L~ 378 (394)
.+..+++|+.||
T Consensus 164 ~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 164 EYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHHHCSSCSEEC
T ss_pred HHHHHHHHhCCCcEEEC
Confidence 255666676665
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=2.7e-13 Score=111.64 Aligned_cols=105 Identities=16% Similarity=0.236 Sum_probs=83.2
Q ss_pred cCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEec
Q 041570 248 LKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSM 327 (394)
Q Consensus 248 L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l 327 (394)
-+.+++++|.++. +|..+. ++|++|++++|++++..|..|..+++|+.|++++|.+++..+..|..+++|++|++
T Consensus 14 ~~~l~~~~n~l~~---iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 14 QTLVNCQNIRLAS---VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SSEEECCSSCCSS---CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcEEEeCCCCCCc---cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence 4678888888865 565543 78888888888888888888888888888888888888655556778888888888
Q ss_pred CCcccceeechhhccCCCCCcEEEcCCCCcccC
Q 041570 328 VSCEVNGVLDGQGFLNFKSLERLDMGGARNALN 360 (394)
Q Consensus 328 ~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~ 360 (394)
++|.++ .+|...+..+++|++|++++ |.+.
T Consensus 89 ~~N~l~-~l~~~~~~~l~~L~~L~L~~--N~~~ 118 (174)
T 2r9u_A 89 NDNHLK-SIPRGAFDNLKSLTHIYLYN--NPWD 118 (174)
T ss_dssp CSSCCC-CCCTTTTTTCTTCSEEECCS--SCBC
T ss_pred CCCccc-eeCHHHhccccCCCEEEeCC--CCcc
Confidence 888888 45553678888888888888 8776
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=5.8e-13 Score=109.21 Aligned_cols=109 Identities=16% Similarity=0.079 Sum_probs=91.7
Q ss_pred CCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEE
Q 041570 222 LEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFL 301 (394)
Q Consensus 222 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L 301 (394)
.+++++++|.+. .+|. .+ .++|++|++++|.+++. .|..+..+++|++|++++|++++..+..|..+++|+.|
T Consensus 11 ~~~l~~s~n~l~--~ip~-~~--~~~l~~L~L~~N~i~~~--~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 11 GTTVDCSGKSLA--SVPT-GI--PTTTQVLYLYDNQITKL--EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp TTEEECTTSCCS--SCCS-CC--CTTCSEEECCSSCCCCC--CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEEEeCCCCcC--ccCc-cC--CCCCcEEEcCCCcCCcc--ChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence 578999999886 4665 33 37899999999999886 57778889999999999999998888888899999999
Q ss_pred EcCCCcCChhhhhchhccCCCCeEecCCcccceeec
Q 041570 302 NLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLD 337 (394)
Q Consensus 302 ~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip 337 (394)
++++|.+++..+..+..+++|++|++++|.+....+
T Consensus 84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999999997666678899999999999998876543
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=9.8e-13 Score=108.21 Aligned_cols=107 Identities=18% Similarity=0.147 Sum_probs=90.9
Q ss_pred CCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEE
Q 041570 222 LEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFL 301 (394)
Q Consensus 222 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L 301 (394)
-+.++++++.+. .+|. .+. ++|++|++++|.+++. .|..+..+++|++|+|++|++++..+..|..+++|+.|
T Consensus 14 ~~~l~~~~n~l~--~iP~-~~~--~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 14 QTLVNCQNIRLA--SVPA-GIP--TDKQRLWLNNNQITKL--EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL 86 (174)
T ss_dssp SSEEECCSSCCS--SCCS-CCC--TTCSEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CcEEEeCCCCCC--ccCC-CcC--CCCcEEEeCCCCcccc--CHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEE
Confidence 368999999885 6665 332 7899999999999886 67788899999999999999998877778899999999
Q ss_pred EcCCCcCChhhhhchhccCCCCeEecCCccccee
Q 041570 302 NLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGV 335 (394)
Q Consensus 302 ~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 335 (394)
++++|.+++..+..+..+++|++|++++|.+...
T Consensus 87 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 9999999966666688999999999999988744
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.40 E-value=4.7e-14 Score=130.48 Aligned_cols=158 Identities=17% Similarity=0.136 Sum_probs=80.3
Q ss_pred CCCCEEEcCCCCCCccccc--------cCCCCcEEEccCcccCCccChhhhcCCCCCCEEECCCCCCCCCcccCcCC---
Q 041570 174 SKLQSLDLSHNNLNRIILS--------SLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLSNNKGINNFVVPQDY--- 242 (394)
Q Consensus 174 ~~L~~L~l~~n~l~~~~~~--------~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--- 242 (394)
+.|++|++++|.++..... ..++|++|++++|.++..........+++|++|++++|.+. .. ....+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~-~~-~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG-PE-ACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC-HH-HHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC-HH-HHHHHHHH
Confidence 6778888888887664322 23466666666666543222112223445666666666554 11 11011
Q ss_pred --CCCCCcCEEEcCCCCCCC--ChhhhhhcCCCCCCCEEeCcCCCCCccc----hhhcCCCCCCCEEEcCCCcCChh---
Q 041570 243 --RGLSKLKRLDLSGVGIRD--GSELLRSMGSFPSLKTLFLEANNFTATT----TQELHNFTNLEFLNLRHSSLDIN--- 311 (394)
Q Consensus 243 --~~l~~L~~L~l~~n~~~~--~~~~~~~l~~~~~L~~L~l~~n~~~~~~----~~~l~~~~~L~~L~l~~n~l~~~--- 311 (394)
...++|++|++++|.++. ...++..+..+++|++|+|++|.+++.. +..+...++|+.|++++|.+++.
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 234456666666665542 1123334445555666666666554322 33444455566666666655542
Q ss_pred -hhhchhccCCCCeEecCCcccc
Q 041570 312 -LLKTIASFTSLKNLSMVSCEVN 333 (394)
Q Consensus 312 -~~~~l~~~~~L~~L~l~~n~l~ 333 (394)
++..+...++|++|+|++|.++
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHhCCCCCEEeccCCCCC
Confidence 2233344455555555555554
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.38 E-value=1.1e-13 Score=128.06 Aligned_cols=189 Identities=19% Similarity=0.140 Sum_probs=128.4
Q ss_pred cCCCCcEEEccCcccCCccChhhhc-----CCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCC--hhhh
Q 041570 193 SLTTLSELYLSGMGFEGTFDVQEFD-----SLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDG--SELL 265 (394)
Q Consensus 193 ~l~~L~~L~l~~~~~~~~~~~~~~~-----~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~ 265 (394)
..+.|++|++++|.++.... ..+. ..++|++|++++|.+. ..........+++|++|++++|.++.. ..+.
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~-~~l~~~L~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKC-TVVAAVLGSGRHALDEVNLASCQLD-PAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHH-HHHHHHHSSCSSCEEEEECTTCCCC-HHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHH-HHHHHHHhhCCCCceEEEecCCCCC-HHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence 45789999999999874322 2222 2368999999999886 222222334456899999999998753 1122
Q ss_pred hhc-CCCCCCCEEeCcCCCCCcc----chhhcCCCCCCCEEEcCCCcCChh----hhhchhccCCCCeEecCCccccee-
Q 041570 266 RSM-GSFPSLKTLFLEANNFTAT----TTQELHNFTNLEFLNLRHSSLDIN----LLKTIASFTSLKNLSMVSCEVNGV- 335 (394)
Q Consensus 266 ~~l-~~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~- 335 (394)
..+ ...++|++|+|++|.++.. ++..+...++|++|+|++|.+++. ++..+...++|++|+|++|.+++.
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 333 3567899999999998753 344557788999999999999763 356677888999999999998753
Q ss_pred ---echhhccCCCCCcEEEcCCCCcccCCcccccccccc---C--CCcEEe--cccccccee
Q 041570 336 ---LDGQGFLNFKSLERLDMGGARNALNASFLQIIGESM---A--SLKHLS--LSYSILNAN 387 (394)
Q Consensus 336 ---ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~---~--~L~~L~--l~~n~l~g~ 387 (394)
++. .+...++|++|++++ |.++ ..-...+... . .|+.+. +..|.++.+
T Consensus 228 ~~~l~~-~L~~~~~L~~L~Ls~--N~i~-~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 228 ALALAR-AAREHPSLELLHLYF--NELS-SEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHH-HHHHCSSCCEEECTT--SSCC-HHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHH-HHHhCCCCCEEeccC--CCCC-HHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 223 455678999999999 8887 3322233222 2 277777 777766543
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=7e-12 Score=115.14 Aligned_cols=103 Identities=17% Similarity=0.215 Sum_probs=58.1
Q ss_pred EEECCCC-CCCCCcccCcCCCCCCCcCEEEcCC-CCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEE
Q 041570 224 ELYLSNN-KGINNFVVPQDYRGLSKLKRLDLSG-VGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFL 301 (394)
Q Consensus 224 ~L~l~~n-~~~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L 301 (394)
.++++++ .+. .+|. +..+++|++|+|++ |.+++. .+..|..+++|++|+|++|++++..|..|..+++|+.|
T Consensus 12 ~v~~~~~n~l~--~ip~--l~~~~~L~~L~l~~~n~l~~~--~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 85 (347)
T 2ifg_A 12 GLRCTRDGALD--SLHH--LPGAENLTELYIENQQHLQHL--ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85 (347)
T ss_dssp CEECCSSCCCT--TTTT--SCSCSCCSEEECCSCSSCCEE--CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred EEEcCCCCCCC--ccCC--CCCCCCeeEEEccCCCCCCCc--ChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence 3455554 444 3443 55556666666664 666554 33455666666666666666666655566666666666
Q ss_pred EcCCCcCChhhhhchhccCCCCeEecCCcccc
Q 041570 302 NLRHSSLDINLLKTIASFTSLKNLSMVSCEVN 333 (394)
Q Consensus 302 ~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 333 (394)
+|++|.+++..+..+..++ |+.|++.+|.+.
T Consensus 86 ~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 86 NLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp ECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred eCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 6666666643333343333 666666666555
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.26 E-value=1.5e-11 Score=112.98 Aligned_cols=104 Identities=17% Similarity=0.248 Sum_probs=84.9
Q ss_pred CEEEcCCC-CCCCChhhhhhcCCCCCCCEEeCcC-CCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEe
Q 041570 249 KRLDLSGV-GIRDGSELLRSMGSFPSLKTLFLEA-NNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLS 326 (394)
Q Consensus 249 ~~L~l~~n-~~~~~~~~~~~l~~~~~L~~L~l~~-n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ 326 (394)
..++.+++ .+++ +|. +..+++|++|+|++ |.+++..+..|..+++|+.|+|++|.+++..|..|.++++|++|+
T Consensus 11 ~~v~~~~~n~l~~---ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 11 SGLRCTRDGALDS---LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp SCEECCSSCCCTT---TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred CEEEcCCCCCCCc---cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence 35678877 7776 677 88888899999986 888888888888899999999999999888888888899999999
Q ss_pred cCCcccceeechhhccCCCCCcEEEcCCCCcccC
Q 041570 327 MVSCEVNGVLDGQGFLNFKSLERLDMGGARNALN 360 (394)
Q Consensus 327 l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~ 360 (394)
|++|.++ .+|...+..++ |+.|++.+ |.+.
T Consensus 87 l~~N~l~-~~~~~~~~~~~-L~~l~l~~--N~~~ 116 (347)
T 2ifg_A 87 LSFNALE-SLSWKTVQGLS-LQELVLSG--NPLH 116 (347)
T ss_dssp CCSSCCS-CCCSTTTCSCC-CCEEECCS--SCCC
T ss_pred CCCCccc-eeCHHHcccCC-ceEEEeeC--CCcc
Confidence 9999888 45553565554 89999988 8877
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.22 E-value=1.2e-09 Score=102.08 Aligned_cols=132 Identities=15% Similarity=0.134 Sum_probs=74.2
Q ss_pred ccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhch
Q 041570 237 VVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTI 316 (394)
Q Consensus 237 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l 316 (394)
+....+..+..++.+.+..+... . ....+..+..++.+.+....+ ....|..+.+|+.+.+..+ ++.....+|
T Consensus 244 i~~~~f~~~~~l~~~~~~~~~~~-i--~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF 316 (394)
T 4fs7_A 244 LGKSVFYGCTDLESISIQNNKLR-I--GGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAF 316 (394)
T ss_dssp ECSSTTTTCSSCCEEEECCTTCE-E--CSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTT
T ss_pred cccccccccccceeEEcCCCcce-e--eccccccccccceeccCceee---ccccccccccccccccccc-cceechhhh
Confidence 33345667777777777665332 1 123445556666666554432 2234556666776666543 332234456
Q ss_pred hccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCcccc-ccccccCCCcEEecccc
Q 041570 317 ASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQ-IIGESMASLKHLSLSYS 382 (394)
Q Consensus 317 ~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~-~~~~~~~~L~~L~l~~n 382 (394)
.++.+|+.+++..+ ++ .|....|.++.+|+.+++.. + ++ .|+ ..|..|++|+.+++..+
T Consensus 317 ~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~--~-l~--~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 317 ESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPL--S-LR--KIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCT--T-CC--EECTTTBTTCTTCCEEEEEGG
T ss_pred cCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECc--c-cc--EehHHHhhCCCCCCEEEECCC
Confidence 66667777766543 33 55555666666777776665 4 33 343 56666677777766554
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.12 E-value=2.4e-09 Score=100.00 Aligned_cols=263 Identities=13% Similarity=0.107 Sum_probs=140.8
Q ss_pred ccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcCCCCCEEEcCCc-----------
Q 041570 94 FLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARLSSLISLSLSHN----------- 162 (394)
Q Consensus 94 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n----------- 162 (394)
.+|..+.+|+.+.+..+ ++ .+.+ .+|.++++|+.+++..+ ++..-...|.++.+|+.+.+..+
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~-~I~~---~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~ 138 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VR-EIGE---FAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKG 138 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CC-EECT---TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTT
T ss_pred HHhhCCCCceEEEeCCC-cc-Ccch---hHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeec
Confidence 35666777777777532 32 2222 23666777777777544 33222335556666665554432
Q ss_pred ------------eeeccccccCCCCCCEEEcCCCCC--CccccccCCCCcEEEccCcccCCccChhhhcCCCCCCEEECC
Q 041570 163 ------------KLEGSIEVKGSSKLQSLDLSHNNL--NRIILSSLTTLSELYLSGMGFEGTFDVQEFDSLSNLEELYLS 228 (394)
Q Consensus 163 ------------~l~~~~~~~~~~~L~~L~l~~n~l--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 228 (394)
...+...+..+.+|+.+.+..+.. .......+++|+.+.+..+ +. .+....+.++..|+.+.+.
T Consensus 139 ~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 139 CDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFP 216 (394)
T ss_dssp CCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCC
T ss_pred ccccccccCccccccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecC
Confidence 111112234445555555543311 1111124445555555433 11 2222344455555554444
Q ss_pred CCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcC
Q 041570 229 NNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSL 308 (394)
Q Consensus 229 ~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 308 (394)
.+... +.. ......+|+.+.+.... +.. -...+..+..++.+.+..+.. ......|..+..++.+....+.+
T Consensus 217 ~~~~~---i~~-~~~~~~~l~~i~ip~~~-~~i--~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i 288 (394)
T 4fs7_A 217 NSLYY---LGD-FALSKTGVKNIIIPDSF-TEL--GKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIV 288 (394)
T ss_dssp TTCCE---ECT-TTTTTCCCCEEEECTTC-CEE--CSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEE
T ss_pred CCceE---eeh-hhcccCCCceEEECCCc-eec--ccccccccccceeEEcCCCcc-eeeccccccccccceeccCceee
Confidence 33211 111 22233455555554321 111 112345566677777665532 23445566677777777665543
Q ss_pred ChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCcccc-ccccccCCCcEEecccc
Q 041570 309 DINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQ-IIGESMASLKHLSLSYS 382 (394)
Q Consensus 309 ~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~-~~~~~~~~L~~L~l~~n 382 (394)
. ...+..+.+|+.+.+..+ ++ .|+...|.++.+|+.+++.+ + ++ .|+ ..|..|.+|+.+++..+
T Consensus 289 ~---~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~--~-v~--~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 289 P---EKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPY--L-VE--EIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp C---TTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCT--T-CC--EECTTTTTTCTTCCEECCCTT
T ss_pred c---cccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCC--c-cc--EEhHHhccCCCCCCEEEECcc
Confidence 2 234677889999998765 44 67776888999999999976 4 44 554 67888999999998765
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.06 E-value=1.8e-08 Score=93.98 Aligned_cols=130 Identities=12% Similarity=0.180 Sum_probs=65.4
Q ss_pred CCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccC
Q 041570 241 DYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFT 320 (394)
Q Consensus 241 ~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~ 320 (394)
.|.++.+|+.+.+..+... . ....+..+++|+.+.+. +.++......|.++.+|+.+++..+ ++.....+|.+|.
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I--~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-I--GTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-E--CTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred eeeecccccEEecccccce-e--cCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 4555666666666543221 1 12345556666666664 3344444456666666666666543 3322344566666
Q ss_pred CCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCccccccccccCCCcEEeccccc
Q 041570 321 SLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQIIGESMASLKHLSLSYSI 383 (394)
Q Consensus 321 ~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~~~~~~~~~L~~L~l~~n~ 383 (394)
+|+.+.+..+ ++ .|....|.+|++|+.+++.+ +... -..+..+.+|+.+.+..+.
T Consensus 335 ~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~--~~~~----~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 335 QLERIAIPSS-VT-KIPESAFSNCTALNNIEYSG--SRSQ----WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp TCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESS--CHHH----HHTCBCCCCC---------
T ss_pred CCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECC--ceee----hhhhhccCCCCEEEeCCCC
Confidence 6666666543 33 45555666666666666666 4322 1344556666666665553
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.04 E-value=6.2e-10 Score=102.09 Aligned_cols=67 Identities=18% Similarity=0.336 Sum_probs=31.1
Q ss_pred CCCcCEEEcCCCCCCCChhhhhhc---CCCCCCCEEeCcCCCCCccch----hhcCCCCCCCEEEcCCCcCChhhh
Q 041570 245 LSKLKRLDLSGVGIRDGSELLRSM---GSFPSLKTLFLEANNFTATTT----QELHNFTNLEFLNLRHSSLDINLL 313 (394)
Q Consensus 245 l~~L~~L~l~~n~~~~~~~~~~~l---~~~~~L~~L~l~~n~~~~~~~----~~l~~~~~L~~L~l~~n~l~~~~~ 313 (394)
+++|++|++++|.+.+. .+..+ ..+++|++|+|+.|.+++..+ ..+..+++|+.|++++|.+++...
T Consensus 251 ~p~Lr~L~L~~~~i~~~--~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~ 324 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNV--VVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK 324 (362)
T ss_dssp CTTCCEEEEESCTTHHH--HHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred CCCcCEEeCCCCCCchH--HHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence 45566666665555432 11111 234455555555555544322 222233555555555555554333
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.02 E-value=7e-08 Score=89.95 Aligned_cols=109 Identities=15% Similarity=0.168 Sum_probs=85.0
Q ss_pred hhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCC
Q 041570 266 RSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFK 345 (394)
Q Consensus 266 ~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~ 345 (394)
..+..+.+|+.+.+..+.. ......|.+++.|+.+.+.. .++......|.++.+|+.+++..+ ++ .|....|.+|.
T Consensus 259 ~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~ 334 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCE 334 (394)
T ss_dssp TTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCT
T ss_pred ceeeecccccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCC
Confidence 3566788899999876543 35556788899999999964 454344556889999999999765 44 67777899999
Q ss_pred CCcEEEcCCCCcccCCcccc-ccccccCCCcEEeccccc
Q 041570 346 SLERLDMGGARNALNASFLQ-IIGESMASLKHLSLSYSI 383 (394)
Q Consensus 346 ~L~~L~l~~~~n~l~~g~l~-~~~~~~~~L~~L~l~~n~ 383 (394)
+|+.+.+.. + ++ .|. ..|..|++|+.+++.++.
T Consensus 335 ~L~~i~ip~--s-v~--~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 335 QLERIAIPS--S-VT--KIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TCCEEEECT--T-CC--BCCGGGGTTCTTCCEEEESSCH
T ss_pred CCCEEEECc--c-cC--EEhHhHhhCCCCCCEEEECCce
Confidence 999999976 4 44 454 789999999999998874
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.01 E-value=1.9e-10 Score=105.46 Aligned_cols=160 Identities=23% Similarity=0.270 Sum_probs=98.0
Q ss_pred chHhhhcCCCCCEEEcCCceeeccccccCCCCCCEEEcCCCCCCccccc-----cCCCCcEEEccC--cccCCccCh---
Q 041570 144 ISSSLARLSSLISLSLSHNKLEGSIEVKGSSKLQSLDLSHNNLNRIILS-----SLTTLSELYLSG--MGFEGTFDV--- 213 (394)
Q Consensus 144 ~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~-----~l~~L~~L~l~~--~~~~~~~~~--- 213 (394)
+...+..+|+|+.|++++|.-.. ++....++|++|++..+.+...... .+++|++|+|+. +...+....
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~-l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLS-IGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCB-CCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHHHhcCCCCcEEEEeCCCCce-eccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 44555667777777776662111 1212357778887777776654321 577888887753 111111000
Q ss_pred -hhh--cCCCCCCEEECCCCCCCCCcccCc--CCCCCCCcCEEEcCCCCCCCC--hhhhhhcCCCCCCCEEeCcCCCCCc
Q 041570 214 -QEF--DSLSNLEELYLSNNKGINNFVVPQ--DYRGLSKLKRLDLSGVGIRDG--SELLRSMGSFPSLKTLFLEANNFTA 286 (394)
Q Consensus 214 -~~~--~~l~~L~~L~l~~n~~~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~--~~~~~~l~~~~~L~~L~l~~n~~~~ 286 (394)
..+ ..+++|++|++.+|.+. ...... ....+++|++|+|+.|.+.+. ..++..+..+++|+.|++++|.++.
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~-~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQ-NVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTH-HHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCc-hHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 112 35789999999988875 222110 113568999999999988753 1234444456899999999999886
Q ss_pred cchhhcCC-CCCCCEEEcCCCc
Q 041570 287 TTTQELHN-FTNLEFLNLRHSS 307 (394)
Q Consensus 287 ~~~~~l~~-~~~L~~L~l~~n~ 307 (394)
..-..+.. + ...++++.+.
T Consensus 322 ~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 322 EMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHHHc--CCEEEecCCc
Confidence 65555543 2 4667888776
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.90 E-value=2.5e-09 Score=88.56 Aligned_cols=116 Identities=16% Similarity=0.184 Sum_probs=52.7
Q ss_pred hcCCCCCCCEEeCcCC-CCCcc----chhhcCCCCCCCEEEcCCCcCChh----hhhchhccCCCCeEecCCccccee--
Q 041570 267 SMGSFPSLKTLFLEAN-NFTAT----TTQELHNFTNLEFLNLRHSSLDIN----LLKTIASFTSLKNLSMVSCEVNGV-- 335 (394)
Q Consensus 267 ~l~~~~~L~~L~l~~n-~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~-- 335 (394)
.+...++|++|+|++| .+... +...+...++|++|+|++|.+.+. +...+...++|++|+|++|.+...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3444445555555554 44322 222333444555555555555432 222333344555555555554432
Q ss_pred --echhhccCCCCCcEEEc--CCCCcccCCcc---ccccccccCCCcEEeccccccc
Q 041570 336 --LDGQGFLNFKSLERLDM--GGARNALNASF---LQIIGESMASLKHLSLSYSILN 385 (394)
Q Consensus 336 --ip~~~~~~~~~L~~L~l--~~~~n~l~~g~---l~~~~~~~~~L~~L~l~~n~l~ 385 (394)
+.. .+...++|++|++ ++ |.+.+.. +...+...++|++|++++|.+.
T Consensus 111 ~~l~~-~L~~n~~L~~L~L~~~~--N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVE-ALQSNTSLIELRIDNQS--QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHH-GGGGCSSCCEEECCCCS--SCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHH-HHHhCCCceEEEecCCC--CCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 122 3444455555555 44 5554111 2234444555666666655543
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.84 E-value=6.7e-07 Score=82.77 Aligned_cols=129 Identities=13% Similarity=0.161 Sum_probs=62.2
Q ss_pred cCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCC
Q 041570 217 DSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFT 296 (394)
Q Consensus 217 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~ 296 (394)
....+|+.+.+..+- ..+....+..+..|+.+.+..+ ++.. -...+..+.+|+.+.+..+ +.......|.+++
T Consensus 214 ~~~~~l~~i~~~~~~---~~i~~~~f~~~~~L~~i~lp~~-v~~I--~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~ 286 (379)
T 4h09_A 214 SYGKNLKKITITSGV---TTLGDGAFYGMKALDEIAIPKN-VTSI--GSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS 286 (379)
T ss_dssp TTCSSCSEEECCTTC---CEECTTTTTTCSSCCEEEECTT-CCEE--CTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT
T ss_pred ccccccceeeeccce---eEEccccccCCccceEEEcCCC-ccEe--Cccccceeehhcccccccc-ceecccccccccc
Confidence 334445555443331 1233334555555555555443 2211 1223444555555555432 3333334555556
Q ss_pred CCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCC
Q 041570 297 NLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGG 354 (394)
Q Consensus 297 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~ 354 (394)
+|+.+.+.++.++..-...|.+|.+|+.+.+..+ ++ .|....|.++.+|+.+.+..
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECC
Confidence 6666666555554333444555666666666433 33 44444555566666655544
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.80 E-value=7.5e-09 Score=85.71 Aligned_cols=113 Identities=14% Similarity=0.121 Sum_probs=51.2
Q ss_pred CCCCcCEEEcCCC-CCCC--ChhhhhhcCCCCCCCEEeCcCCCCCccc----hhhcCCCCCCCEEEcCCCcCChh----h
Q 041570 244 GLSKLKRLDLSGV-GIRD--GSELLRSMGSFPSLKTLFLEANNFTATT----TQELHNFTNLEFLNLRHSSLDIN----L 312 (394)
Q Consensus 244 ~l~~L~~L~l~~n-~~~~--~~~~~~~l~~~~~L~~L~l~~n~~~~~~----~~~l~~~~~L~~L~l~~n~l~~~----~ 312 (394)
..++|++|++++| .+.. ...+...+...++|++|+|++|.+.... ...+...++|++|+|++|.+++. +
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 3444445555444 4431 1123334444455555555555554322 22233334555555555555432 2
Q ss_pred hhchhccCCCCeEec--CCccccee----echhhccCCCCCcEEEcCCCCccc
Q 041570 313 LKTIASFTSLKNLSM--VSCEVNGV----LDGQGFLNFKSLERLDMGGARNAL 359 (394)
Q Consensus 313 ~~~l~~~~~L~~L~l--~~n~l~~~----ip~~~~~~~~~L~~L~l~~~~n~l 359 (394)
...+...++|++|++ ++|.+... +.. .+...++|++|++++ |.+
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~--n~i 163 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHF--TQQ 163 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCC--SSH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccC--CCC
Confidence 333444455555555 44555432 111 333445566666655 444
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.59 E-value=1.1e-05 Score=74.40 Aligned_cols=282 Identities=12% Similarity=0.115 Sum_probs=170.6
Q ss_pred cEEEEecCCCCCCCCCCCccccccCCCCCCCCEEeccCCcCCCccccchhhhhcCCCCCcEEEcccccCCccchHhhhcC
Q 041570 72 RVIGLDLSDTRNEDLGEGYLNAFLFTPFQQLESLILSNNSIAGCVENEGLEMLSRLSNLKFLDLRMNLFKNSISSSLARL 151 (394)
Q Consensus 72 ~v~~l~l~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l 151 (394)
.++.+.+.. +++ .+...+|..+.+|+.+++..+ ++ .+.+ .++.++ .|+.+.+..+ +...-...|..
T Consensus 47 ~i~~v~ip~-~vt-----~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~---~aF~~c-~l~~i~~~~~-l~~I~~~aF~~- 112 (379)
T 4h09_A 47 RISEVRVNS-GIT-----SIGEANFNSCYNMTKVTVAST-VT-SIGD---GAFADT-KLQSYTGMER-VKKFGDYVFQG- 112 (379)
T ss_dssp GCSEEEECT-TEE-----EECTTTTTTCTTCCEEEECTT-CC-EECT---TTTTTC-CCCEEEECTT-CCEECTTTTTT-
T ss_pred CCEEEEeCC-Ccc-----ChHHHHhhCCCCCCEEEeCCc-ce-Eech---hhhcCC-CCceEECCce-eeEeccceecc-
Confidence 455555543 222 234557899999999999654 33 3333 236666 5777777644 33222234444
Q ss_pred CCCCEEEcCCceeeccccccCCCCCCEEEcCCCC--CCccccccCCCCcEEEccCcccCC------------ccChhhhc
Q 041570 152 SSLISLSLSHNKLEGSIEVKGSSKLQSLDLSHNN--LNRIILSSLTTLSELYLSGMGFEG------------TFDVQEFD 217 (394)
Q Consensus 152 ~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~--l~~~~~~~l~~L~~L~l~~~~~~~------------~~~~~~~~ 217 (394)
++|+.+.+..+-..-........+++.+.+..+- +.......+.+++.+.+....... ... ..+.
T Consensus 113 ~~L~~i~lp~~~~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 191 (379)
T 4h09_A 113 TDLDDFEFPGATTEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTIL-ESYP 191 (379)
T ss_dssp CCCSEEECCTTCCEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEE-EECC
T ss_pred CCcccccCCCccccccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccceeccccccee-cccc
Confidence 4799998876532211112223456665554331 111122255566666554432210 111 2233
Q ss_pred CCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCC
Q 041570 218 SLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTN 297 (394)
Q Consensus 218 ~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~ 297 (394)
....+..+.+.... ..+....+..+.+|+.+.+..+ +... ....+..+..|+.+.+..+ ++......|.++.+
T Consensus 192 ~~~~~~~~~~~~~~---~~i~~~~f~~~~~l~~i~~~~~-~~~i--~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~ 264 (379)
T 4h09_A 192 AAKTGTEFTIPSTV---KTVTAYGFSYGKNLKKITITSG-VTTL--GDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTA 264 (379)
T ss_dssp TTCCCSEEECCTTC---CEECTTTTTTCSSCSEEECCTT-CCEE--CTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTT
T ss_pred ccccccccccccce---eEEeecccccccccceeeeccc-eeEE--ccccccCCccceEEEcCCC-ccEeCccccceeeh
Confidence 44555666554433 2233446677788888888665 2221 2345667888999988765 55555677888889
Q ss_pred CCEEEcCCCcCChhhhhchhccCCCCeEecCCcccceeechhhccCCCCCcEEEcCCCCcccCCcccc-ccccccCCCcE
Q 041570 298 LEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVNGVLDGQGFLNFKSLERLDMGGARNALNASFLQ-IIGESMASLKH 376 (394)
Q Consensus 298 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~l~~~~n~l~~g~l~-~~~~~~~~L~~ 376 (394)
|+.+.+..+ ++......|..+++|+.+.+.++.++ .|+...|.++.+|+.+++.. + ++ .|. ..|..|++|+.
T Consensus 265 l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~--~-l~--~I~~~aF~~C~~L~~ 337 (379)
T 4h09_A 265 LKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPT--A-LK--TIQVYAFKNCKALST 337 (379)
T ss_dssp CCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCT--T-CC--EECTTTTTTCTTCCC
T ss_pred hcccccccc-ceeccccccccccccccccccccccc-eehhhhhcCCCCCCEEEcCc--c-cc--EEHHHHhhCCCCCCE
Confidence 999998654 44333456788899999999888777 67776888999999999976 4 44 555 67888899998
Q ss_pred Eecccc
Q 041570 377 LSLSYS 382 (394)
Q Consensus 377 L~l~~n 382 (394)
+.+..+
T Consensus 338 i~ip~~ 343 (379)
T 4h09_A 338 ISYPKS 343 (379)
T ss_dssp CCCCTT
T ss_pred EEECCc
Confidence 888654
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.43 E-value=4.9e-08 Score=85.03 Aligned_cols=80 Identities=23% Similarity=0.297 Sum_probs=50.4
Q ss_pred CCCCCCEEeCcCCCCCc--cchhhcCCCCCCCEEEcCCCcCChhhhhchhccC--CCCeEecCCcccceeech------h
Q 041570 270 SFPSLKTLFLEANNFTA--TTTQELHNFTNLEFLNLRHSSLDINLLKTIASFT--SLKNLSMVSCEVNGVLDG------Q 339 (394)
Q Consensus 270 ~~~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~--~L~~L~l~~n~l~~~ip~------~ 339 (394)
.+++|++|+|++|++++ .+|..+..+++|+.|+|++|.+++. ..+..+. +|++|++++|.+.+.+|. .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 46677777777777776 3345556677777777777777653 2233333 677777777777665542 2
Q ss_pred hccCCCCCcEEE
Q 041570 340 GFLNFKSLERLD 351 (394)
Q Consensus 340 ~~~~~~~L~~L~ 351 (394)
.+..+|+|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 355666666665
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.40 E-value=3.6e-07 Score=79.54 Aligned_cols=82 Identities=23% Similarity=0.268 Sum_probs=48.3
Q ss_pred CCCCcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCCCCcc-chhhcCCCCCCCEEEcCCCcCChhhh-------hc
Q 041570 244 GLSKLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANNFTAT-TTQELHNFTNLEFLNLRHSSLDINLL-------KT 315 (394)
Q Consensus 244 ~l~~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~l~~~~~-------~~ 315 (394)
++++|+.|+|++|.+++...++..+..+++|+.|+|++|++++. ....+..+ +|++|++++|.+.+.+| ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence 34556666666666655333444555566777777777776654 11222333 67777777777765443 23
Q ss_pred hhccCCCCeEe
Q 041570 316 IASFTSLKNLS 326 (394)
Q Consensus 316 l~~~~~L~~L~ 326 (394)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 56778888776
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.39 E-value=2.2e-07 Score=75.14 Aligned_cols=82 Identities=12% Similarity=0.142 Sum_probs=35.3
Q ss_pred CcCEEEcCCCCCCCChhhhhhcCCCCCCCEEeCcCCC-CCccchhhcCCC----CCCCEEEcCCCc-CChhhhhchhccC
Q 041570 247 KLKRLDLSGVGIRDGSELLRSMGSFPSLKTLFLEANN-FTATTTQELHNF----TNLEFLNLRHSS-LDINLLKTIASFT 320 (394)
Q Consensus 247 ~L~~L~l~~n~~~~~~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~l~~~----~~L~~L~l~~n~-l~~~~~~~l~~~~ 320 (394)
+|+.|++++|.++.. -...+..+++|++|+|++|. +++..-..++.+ ++|+.|+|++|. +++.....+.+++
T Consensus 62 ~L~~LDLs~~~Itd~--GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSI--GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGG--GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred eEeEEeCcCCCccHH--HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 455555555544432 22333444555555555542 443333333332 234444444442 4443333344444
Q ss_pred CCCeEecCCc
Q 041570 321 SLKNLSMVSC 330 (394)
Q Consensus 321 ~L~~L~l~~n 330 (394)
+|++|++++|
T Consensus 140 ~L~~L~L~~c 149 (176)
T 3e4g_A 140 NLKYLFLSDL 149 (176)
T ss_dssp TCCEEEEESC
T ss_pred CCCEEECCCC
Confidence 4444444444
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.32 E-value=6.1e-07 Score=72.56 Aligned_cols=87 Identities=11% Similarity=0.211 Sum_probs=63.0
Q ss_pred CCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCc-CChhhhhchhcc----CCCCeEecCCcc-cceeechhhccCCC
Q 041570 272 PSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSS-LDINLLKTIASF----TSLKNLSMVSCE-VNGVLDGQGFLNFK 345 (394)
Q Consensus 272 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~----~~L~~L~l~~n~-l~~~ip~~~~~~~~ 345 (394)
..|++||++++.++...-..+..+++|+.|+|++|. +++.....+..+ ++|++|++++|. ++..--. .+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCC
Confidence 468888888888877666677788888888888884 777666666653 468888888874 6644333 566778
Q ss_pred CCcEEEcCCCCcccC
Q 041570 346 SLERLDMGGARNALN 360 (394)
Q Consensus 346 ~L~~L~l~~~~n~l~ 360 (394)
+|+.|++++| ..++
T Consensus 140 ~L~~L~L~~c-~~It 153 (176)
T 3e4g_A 140 NLKYLFLSDL-PGVK 153 (176)
T ss_dssp TCCEEEEESC-TTCC
T ss_pred CCCEEECCCC-CCCC
Confidence 8888888887 4444
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.09 E-value=1.1e-05 Score=66.43 Aligned_cols=115 Identities=17% Similarity=0.164 Sum_probs=49.1
Q ss_pred CCCCCCCEEeCcCC-CCCcc----chhhcCCCCCCCEEEcCCCcCChhh----hhchhccCCCCeEecCCcccceeech-
Q 041570 269 GSFPSLKTLFLEAN-NFTAT----TTQELHNFTNLEFLNLRHSSLDINL----LKTIASFTSLKNLSMVSCEVNGVLDG- 338 (394)
Q Consensus 269 ~~~~~L~~L~l~~n-~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~----~~~l~~~~~L~~L~l~~n~l~~~ip~- 338 (394)
..-+.|++|+|++| ++... +.+.+..-+.|+.|+|++|.+.+.. .+.+..-+.|++|+|++|.+...--.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 33344555555443 33321 2233333344555555555554322 22233344555555555554432111
Q ss_pred --hhccCCCCCcEEEcCCCCc-ccCCc---cccccccccCCCcEEeccccc
Q 041570 339 --QGFLNFKSLERLDMGGARN-ALNAS---FLQIIGESMASLKHLSLSYSI 383 (394)
Q Consensus 339 --~~~~~~~~L~~L~l~~~~n-~l~~g---~l~~~~~~~~~L~~L~l~~n~ 383 (394)
+.+..-..|++|+|+++++ .+.+. .+...+...+.|+.|+++.|.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 1333344566666654222 22200 123444455566666665553
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.93 E-value=1.2e-05 Score=66.24 Aligned_cols=109 Identities=13% Similarity=0.152 Sum_probs=50.6
Q ss_pred CCCcCEEEcCCC-CCC--CChhhhhhcCCCCCCCEEeCcCCCCCccc----hhhcCCCCCCCEEEcCCCcCChh----hh
Q 041570 245 LSKLKRLDLSGV-GIR--DGSELLRSMGSFPSLKTLFLEANNFTATT----TQELHNFTNLEFLNLRHSSLDIN----LL 313 (394)
Q Consensus 245 l~~L~~L~l~~n-~~~--~~~~~~~~l~~~~~L~~L~l~~n~~~~~~----~~~l~~~~~L~~L~l~~n~l~~~----~~ 313 (394)
-+.|++|+|++| .+. |...+...+...+.|++|+|++|.+.... .+.+..-+.|+.|+|++|.|.+. +.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 344555555543 442 22223444455555556666555554332 22222335566666666655542 22
Q ss_pred hchhccCCCCeEecCCc---ccce----eechhhccCCCCCcEEEcCC
Q 041570 314 KTIASFTSLKNLSMVSC---EVNG----VLDGQGFLNFKSLERLDMGG 354 (394)
Q Consensus 314 ~~l~~~~~L~~L~l~~n---~l~~----~ip~~~~~~~~~L~~L~l~~ 354 (394)
+.+..-+.|++|+|++| .+.. .+.. .+..-+.|+.|+++.
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISF 166 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCC
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccC
Confidence 33344445666666543 2221 1222 344445566666655
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.57 E-value=0.0036 Score=47.88 Aligned_cols=55 Identities=22% Similarity=0.222 Sum_probs=37.3
Q ss_pred EEEcCCCCCC--CChhhhhhcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCCCcCC
Q 041570 250 RLDLSGVGIR--DGSELLRSMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRHSSLD 309 (394)
Q Consensus 250 ~L~l~~n~~~--~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 309 (394)
.++.+++.++ . +|..+ .++|++|+|++|+++...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~---vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWAS---LPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTT---SCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCcccc---CCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666665 3 45332 246777888888777666667777777888888877764
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.51 E-value=0.0044 Score=47.39 Aligned_cols=57 Identities=11% Similarity=0.042 Sum_probs=41.7
Q ss_pred CEEeCcCCCCC-ccchhhcCCCCCCCEEEcCCCcCChhhhhchhccCCCCeEecCCcccc
Q 041570 275 KTLFLEANNFT-ATTTQELHNFTNLEFLNLRHSSLDINLLKTIASFTSLKNLSMVSCEVN 333 (394)
Q Consensus 275 ~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 333 (394)
..++.+++.++ ..+|..+. ++|+.|+|++|.|+...+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46788888876 24454443 57888888888888655666778888888888888664
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=39.39 E-value=39 Score=23.73 Aligned_cols=39 Identities=21% Similarity=0.352 Sum_probs=17.3
Q ss_pred hhhcCCCCCCEEECCCCCCCCCcccCcCCCCCCCcCEEEcCC
Q 041570 214 QEFDSLSNLEELYLSNNKGINNFVVPQDYRGLSKLKRLDLSG 255 (394)
Q Consensus 214 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~ 255 (394)
..|.++.+|+.+.+-.+- ..+....|.+|.+|+.+.+.+
T Consensus 14 ~aF~~c~~L~~i~iP~~v---~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPNI---GLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTTS---SCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCch---heEcHHHHhccCCccEEEEcC
Confidence 344455555555444332 123333444555555554443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=37.43 E-value=30 Score=24.29 Aligned_cols=38 Identities=16% Similarity=0.125 Sum_probs=19.0
Q ss_pred hcCCCCCCCEEeCcCCCCCccchhhcCCCCCCCEEEcCC
Q 041570 267 SMGSFPSLKTLFLEANNFTATTTQELHNFTNLEFLNLRH 305 (394)
Q Consensus 267 ~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 305 (394)
.|..|.+|+.+.|-.+ ++.....+|.+|.+|+.+.+.+
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3445555555555443 3333334555555555555543
No 167
>1skh_A Major prion protein 2; coil-helix-coil, unknown function; NMR {Bos taurus}
Probab=21.47 E-value=1e+02 Score=16.16 Aligned_cols=19 Identities=26% Similarity=0.097 Sum_probs=12.5
Q ss_pred CCCCCchHHHHHHHHHHHH
Q 041570 1 MGSGSKMVIMLVLSVLLIL 19 (394)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~ 19 (394)
|++.....+++++++....
T Consensus 1 M~k~~~~cwilvLfva~ws 19 (30)
T 1skh_A 1 MVKSKIGSWILVLFVAMWS 19 (30)
T ss_dssp CCTTTTTTHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHh
Confidence 7777777776666655544
Done!