BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041573
(238 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 120 bits (300), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 90/147 (61%), Gaps = 4/147 (2%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
AAR+G V+ IL++N VN++DK TPLHLAA G E+V L K ADV A D
Sbjct: 9 AARAGQDDEVR-ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD 67
Query: 71 DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
+ +H A+++GHLE+V L+ +G + A + G PLH A + HLE+V+ LL+ GA +
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Query: 131 TAKTKAGKTPLDLA---RNEEIRSFLE 154
A+ K GKTP DLA NE+I L+
Sbjct: 128 NAQDKFGKTPFDLAIDNGNEDIAEVLQ 154
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 78 ASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAG 137
A++ G + VR L+++G + A + G PLH A + HLE+V+ LL+ GA + AK K G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 138 KTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKAGESETKL 178
TPL LA E +E ++ ++N K+K G + L
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAG--ADVNAKDKDGYTPLHL 107
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 90/150 (60%), Gaps = 1/150 (0%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
AAR+G V+ IL++N VN++DK TPLHLAA G E+V L K ADV A D
Sbjct: 9 AARAGQDDEVR-ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD 67
Query: 71 DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
+ +H A+++GHLE+V L+ +G + A + G PLH A + HLE+V+ LL+ GA +
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Query: 131 TAKTKAGKTPLDLARNEEIRSFLEEWEQSS 160
A+ K GKTP DLA E E ++++
Sbjct: 128 NAQDKFGKTPFDLAIREGHEDIAEVLQKAA 157
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH AAR G L+ V+ +L+ VN++DK TPLHLAA G E+V L K ADV A
Sbjct: 39 LHLAAREGHLEIVE-VLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 97
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYL 123
D + +H A+++GHLE+V L+ +G + A + G P A++ H ++ + L
Sbjct: 98 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 71/142 (50%), Gaps = 16/142 (11%)
Query: 78 ASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAG 137
A++ G + VR L+++G + A + G PLH A + HLE+V+ LL+ GA + AK K G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 138 KTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKAGESETKLG-------------DSGVE 184
TPL LA E +E ++ ++N K+K G + L +G +
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAG--ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126
Query: 185 VSASSPDGKRDENLK-RKGDED 205
V+A GK +L R+G ED
Sbjct: 127 VNAQDKFGKTPFDLAIREGHED 148
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCK 59
LH AAR G L+ V+ +L+ VN++DK +TP LA G ++ L K
Sbjct: 105 LHLAAREGHLEIVE-VLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQK 155
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 84/147 (57%), Gaps = 4/147 (2%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
AA +G+ V+ LI N VN+ D RTPLH AA G E+V L ADV A D
Sbjct: 11 AAENGNKDRVKD-LIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSD 69
Query: 71 DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
+ +H+A+++GH E+V+ L+S G + A G PLHYA + H E+VK L+ KGA +
Sbjct: 70 GRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV 129
Query: 131 TAKTKAGKTPLDLAR---NEEIRSFLE 154
G+TPLDLAR NEEI LE
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEIVKLLE 156
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 68/123 (55%), Gaps = 1/123 (0%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH AA+ G K + +LIS VN++D RTPLH AA G E+V L ADV A
Sbjct: 41 LHYAAKEGH-KEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK 99
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
D + +H+A+++GH E+V+ L+S G + G PL A + + E+VK L ++G
Sbjct: 100 DSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Query: 128 ASL 130
L
Sbjct: 160 GWL 162
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 86/148 (58%), Gaps = 4/148 (2%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
AAR+G V+ IL++N VN+ D TPLHLAAW G E+V L K+ ADV A D
Sbjct: 21 AARAGQDDEVR-ILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTD 79
Query: 71 DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
+ +H A+ GHLE+V L+ G + A GL PLH A HLE+V+ LL+ GA +
Sbjct: 80 GWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADV 139
Query: 131 TAKTKAGKTPLDLA---RNEEIRSFLEE 155
A+ K GKT D++ NE++ L++
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 114 bits (284), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 89/147 (60%), Gaps = 4/147 (2%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
AAR+G V+ IL++N VN++DK TPLHLAA G E+V L K ADV A D
Sbjct: 21 AARAGQDDEVR-ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD 79
Query: 71 DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
+ +H A+++GHLE+V L+ +G + A + G PLH A + HLE+V+ LL+ GA +
Sbjct: 80 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 139
Query: 131 TAKTKAGKTPLDLA---RNEEIRSFLE 154
A+ K GKT D++ NE++ L+
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 78 ASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAG 137
A++ G + VR L+++G + A + G PLH A + HLE+V+ LL+ GA + AK K G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 138 KTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKAGESETKL 178
TPL LA E +E ++ ++N K+K G + L
Sbjct: 81 YTPLHLAAREGHLEIVEVLLKAG--ADVNAKDKDGYTPLHL 119
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 83/147 (56%), Gaps = 4/147 (2%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
AA +G+ V+ LI N VN+ D RTPLH AA +G EVV L ADV A D
Sbjct: 11 AAENGNKDRVKD-LIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD 69
Query: 71 DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
+ +H A++ GH EVV+ L+S G + A G PLH+A + H E+VK L+ KGA +
Sbjct: 70 GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV 129
Query: 131 TAKTKAGKTPLDLAR---NEEIRSFLE 154
G+TPLDLAR NEE+ LE
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEVVKLLE 156
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH AA +G K V +LIS VN++D RTPLH AA +G EVV L ADV A
Sbjct: 41 LHHAAENGH-KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK 99
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
D + +H A++ GH EVV+ L+S G + G PL A + + E+VK L ++G
Sbjct: 100 DSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Query: 128 ASL 130
L
Sbjct: 160 GWL 162
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 89/148 (60%), Gaps = 4/148 (2%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
AAR+G V+ IL++N VN+RD TPLHLAA G E+V L KN ADV A
Sbjct: 21 AARAGQDDEVR-ILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSL 79
Query: 71 DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
++ +H A+++GHLE+V L+ +G + A G PLH A + HLE+V+ LL+ GA +
Sbjct: 80 GVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADV 139
Query: 131 TAKTKAGKTPLDLA---RNEEIRSFLEE 155
A+ K GKT D++ NE++ L++
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 87/147 (59%), Gaps = 4/147 (2%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
AAR+G V+ IL++N VN+ D TPLHLAA +G E+V L KN ADV A+ +
Sbjct: 21 AARAGQDDEVR-ILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLT 79
Query: 71 DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
++ +H A+ GHLE+V L+ G + A G PLH A + HLE+V+ LL+ GA +
Sbjct: 80 GITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADV 139
Query: 131 TAKTKAGKTPLDLA---RNEEIRSFLE 154
A+ K GKT D++ NE++ L+
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQ 166
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 110 bits (275), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 87/148 (58%), Gaps = 4/148 (2%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
AAR+G V+ IL++N VN+ D TPLHLAA+ G E+V L KN ADV A
Sbjct: 21 AARAGQDDEVR-ILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSL 79
Query: 71 DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
++ +H A+ +GHLEVV L+ +G + A G PLH A HLE+V+ LL+ GA +
Sbjct: 80 GVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADV 139
Query: 131 TAKTKAGKTPLDLA---RNEEIRSFLEE 155
A+ K GKT D++ NE++ L++
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 86/149 (57%), Gaps = 4/149 (2%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
AAR+G V+ IL++N VN+ D +TPLHLAA G E+V L K+ ADV AA
Sbjct: 21 AARAGQDDEVR-ILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKM 79
Query: 71 DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
+ +H A+ GHLE+V L+ +G + A G PLH A HLE+V+ LL+ GA +
Sbjct: 80 GDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADV 139
Query: 131 TAKTKAGKTPLDLA---RNEEIRSFLEEW 156
A+ K GKT D++ NE++ L++
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQKL 168
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 90/148 (60%), Gaps = 4/148 (2%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
AAR+G V+ IL++N VN+ D TPLHLAA+SG E+V L K+ ADV A+ +
Sbjct: 21 AARAGQDDEVR-ILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVF 79
Query: 71 DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
+ +H A+ GHLE+V L+ +G + A G+ PLH A + +LE+V+ LL+ GA +
Sbjct: 80 GYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADV 139
Query: 131 TAKTKAGKTPLDLA---RNEEIRSFLEE 155
A+ K GKT D++ NE++ L++
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 85/147 (57%), Gaps = 4/147 (2%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
AAR+G V+ IL++N VN+ D + TPLHLAA G E+V L KN ADV A
Sbjct: 21 AARAGQDDEVR-ILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFS 79
Query: 71 DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
+ +H A+++GHLE+V L+ G + A G PLH A HLE+V+ LL+ GA +
Sbjct: 80 GSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADV 139
Query: 131 TAKTKAGKTPLDLA---RNEEIRSFLE 154
A+ K GKT D++ NE++ L+
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQ 166
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 80/147 (54%), Gaps = 4/147 (2%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
AA +G+ V+ +L N N+ D RTPLH AA +G E+V L AD A D
Sbjct: 11 AAENGNKDRVKDLL-ENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSD 69
Query: 71 DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
+ +H+A++ GH E+V+ L+S G A G PLHYA + H E+VK LL KGA
Sbjct: 70 GRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADP 129
Query: 131 TAKTKAGKTPLDLAR---NEEIRSFLE 154
G+TPLDLAR NEEI LE
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEIVKLLE 156
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 1/123 (0%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH AA +G K + +L+S N++D RTPLH AA +G E+V L AD A
Sbjct: 41 LHYAAENGH-KEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK 99
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
D + +H+A++ GH E+V+ L+S G G PL A + + E+VK L ++G
Sbjct: 100 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Query: 128 ASL 130
L
Sbjct: 160 GWL 162
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
AAR+G V+ ILI+N VN+ D TPLHLAA SG E+V L K+ ADV AA +
Sbjct: 21 AARAGQDDEVR-ILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVY 79
Query: 71 DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
+ +H A+ GHLE+V L+ G + A G PLH A HLE+V+ LL+ GA +
Sbjct: 80 GFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADV 139
Query: 131 TAKTKAGKTPLDLA 144
A+ K GKT D++
Sbjct: 140 NAQDKFGKTAFDIS 153
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 70/133 (52%), Gaps = 8/133 (6%)
Query: 45 AAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKG 104
AA +GQ + V L N ADV A ++ +H A+ GHLE+V L+ G + A G
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 105 LNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNE---EIRSFLEEWEQSSK 161
PLH A HLE+V+ LL+ GA + A G TPL LA +E EI L ++
Sbjct: 81 FTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKY----- 135
Query: 162 KPNLNGKEKAGES 174
++N ++K G++
Sbjct: 136 GADVNAQDKFGKT 148
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH AA SG L+ V+ +L+ + V++ D + TPLHLAA +G E+V L K ADV A
Sbjct: 51 LHLAAVSGHLEIVE-VLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAF 109
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVK 121
M + +H A+ +GHLE+V L+ G + A + G ++ + +L K
Sbjct: 110 DMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAK 163
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 87/148 (58%), Gaps = 4/148 (2%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
AAR+G V+ IL++N VN+ D TPLHLAA++G E+V L KN ADV A
Sbjct: 21 AARAGRDDEVR-ILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHA 79
Query: 71 DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
M+ + A+ GHLE+V L+ +G + A +G PLH A HLE+V+ LL+ GA +
Sbjct: 80 GMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV 139
Query: 131 TAKTKAGKTPLDLA---RNEEIRSFLEE 155
A+ K GKT D++ NE++ L++
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 85/147 (57%), Gaps = 4/147 (2%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
AAR+G V+ IL++N N+ D + RTPLH+AA G E+V L +N ADV A +
Sbjct: 9 AARAGQDDEVR-ILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN 67
Query: 71 DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
+ +H A+ GHLE+V L+ G + A G+ PL+ A HLE+V+ LL+ GA +
Sbjct: 68 GTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADV 127
Query: 131 TAKTKAGKTPLDLA---RNEEIRSFLE 154
A+ K GKT D++ NE++ L+
Sbjct: 128 NAQDKFGKTAFDISIDIGNEDLAEILQ 154
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 80/147 (54%), Gaps = 4/147 (2%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
AA +G+ V+ +L N VN+ D +TPLHLAA +G EVV L AD A D
Sbjct: 11 AAENGNKDRVKDLL-ENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSD 69
Query: 71 DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
+ +H A++ GH EVV+ L+S G A G PLH A + H E+VK LL +GA
Sbjct: 70 GKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP 129
Query: 131 TAKTKAGKTPLDLAR---NEEIRSFLE 154
G+TPLDLAR NEE+ LE
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEVVKLLE 156
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 65/123 (52%), Gaps = 1/123 (0%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH AA +G K V +L+S N++D +TPLHLAA +G EVV L AD A
Sbjct: 41 LHLAAENGH-KEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK 99
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
D + +H A++ GH EVV+ L+S G G PL A + + E+VK L ++G
Sbjct: 100 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Query: 128 ASL 130
L
Sbjct: 160 GWL 162
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 80/136 (58%), Gaps = 1/136 (0%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
AAR+G V+ IL++N VN+ D TPLHLAA+ G E+V L KN ADV A
Sbjct: 21 AARAGRDDEVR-ILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTL 79
Query: 71 DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
+ +H A+ GHLE+V L+ +G + A G+ PLH A HLE+V+ LL+ GA +
Sbjct: 80 GSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADV 139
Query: 131 TAKTKAGKTPLDLARN 146
A+ K GKT D++ N
Sbjct: 140 NAQDKFGKTAFDISIN 155
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 74/125 (59%)
Query: 23 ILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG 82
IL++N VN+ D + TPLHLAA +GQ E+V L KN ADV A+ ++ +H A+ G
Sbjct: 24 ILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDG 83
Query: 83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLD 142
HLE+V L+ G + A R G PLH A LE+V+ LL+ GA + A+ G T D
Sbjct: 84 HLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFD 143
Query: 143 LARNE 147
++ N+
Sbjct: 144 ISINQ 148
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH AA +G L+ V+ +L+ N VN+ D TPLHLAA+ G E+V L K+ ADV A
Sbjct: 43 LHLAAANGQLEIVE-VLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAY 101
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYL 123
+ +H A+ G LE+V L+ G + A GL ++ +L + L
Sbjct: 102 DRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 103 bits (258), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 85/148 (57%), Gaps = 4/148 (2%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
AAR+G V+ IL++N VN+ D TPLHL +G E++ L K ADV A+
Sbjct: 21 AARAGQDDEVR-ILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKS 79
Query: 71 DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
+ +H A+ +GHLE+V L+ G + A +G PLH A + HLE+V+ LL+ GA +
Sbjct: 80 GWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADV 139
Query: 131 TAKTKAGKTPLDLA---RNEEIRSFLEE 155
A+ K GKT D++ NE++ L++
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 84/148 (56%), Gaps = 4/148 (2%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
AAR+G V+ IL++N VN+ D TPLHLAA +G E+V L K ADV A
Sbjct: 21 AARAGQDDEVR-ILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNY 79
Query: 71 DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
+ +H A+ GHLE+V L+ G + A +G PLH A HLE+V+ LL+ GA +
Sbjct: 80 GATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADV 139
Query: 131 TAKTKAGKTPLDLA---RNEEIRSFLEE 155
A+ K GKT D++ NE++ L++
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 78/126 (61%), Gaps = 1/126 (0%)
Query: 3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA 62
N LH AAR+G L+ V+ +L+ VN++DK+ RTPLHLAA +G EVV L + A
Sbjct: 1 NGRTPLHLAARNGHLEVVK-LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 63 DVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKY 122
DV A + + +H A++ GHLEVV+ L+ +G + A + G PLH A + HLE+VK
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 123 LLRKGA 128
LL GA
Sbjct: 120 LLEAGA 125
Score = 100 bits (248), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 74/121 (61%), Gaps = 4/121 (3%)
Query: 38 SRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSI 97
RTPLHLAA +G EVV L + ADV A + + +H A++ GHLEVV+ L+ +G +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 98 KACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDL-ARN---EEIRSFL 153
A + G PLH A + HLE+VK LL GA + AK K G+TPL L ARN E ++ L
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 154 E 154
E
Sbjct: 122 E 122
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 84/148 (56%), Gaps = 4/148 (2%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
AAR+G V+ IL++N VN+ D TPLHLAA G E+V L K+ ADV A +
Sbjct: 21 AARAGQDDEVR-ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIX 79
Query: 71 DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
+ +H A+ GHLE+V L+ G + A G PLH A HLE+V+ LL+ GA +
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Query: 131 TAKTKAGKTPLDLA---RNEEIRSFLEE 155
A+ K GKT D++ NE++ L++
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 84/148 (56%), Gaps = 4/148 (2%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
AAR+G V+ IL++N VN+ D TPLHLAA G E+V L K+ ADV A +
Sbjct: 21 AARAGQDDEVR-ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIM 79
Query: 71 DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
+ +H A+ GHLE+V L+ G + A G PLH A HLE+V+ LL+ GA +
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Query: 131 TAKTKAGKTPLDLA---RNEEIRSFLEE 155
A+ K GKT D++ NE++ L++
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 82/161 (50%), Gaps = 1/161 (0%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH A+ G L V+++L S N + TPLH+AA +G TEV YL +NKA V A
Sbjct: 18 LHVASFMGHLPIVKNLL-QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 76
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
A DD + +H A++ GH +V+ L+ + + T G PLH A + H+E V LL K
Sbjct: 77 AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 136
Query: 128 ASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGK 168
AS TK G TPL +A E + PN GK
Sbjct: 137 ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK 177
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 82/162 (50%), Gaps = 1/162 (0%)
Query: 3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA 62
N LH AA+ ++ +S+L S N+ TPLHLAA G E+V+ L +A
Sbjct: 211 NGYTPLHIAAKQNQVEVARSLLQYGG-SANAESVQGVTPLHLAAQEGHAEMVALLLSKQA 269
Query: 63 DVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKY 122
+ ++ +H +Q+GH+ V L+ GV + A TR G PLH A +++LVK+
Sbjct: 270 NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKF 329
Query: 123 LLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPN 164
LL+ A + AKTK G +PL A + + ++ PN
Sbjct: 330 LLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN 371
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 82/166 (49%), Gaps = 4/166 (2%)
Query: 5 EEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADV 64
E LH AAR+G + V L+ N VN++ K +TPLH AA G T +V L +N A+
Sbjct: 48 ETPLHMAARAGHTE-VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP 106
Query: 65 GAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLL 124
A + +H A+++GH+E V L+ S T+KG PLH A + + + + LL
Sbjct: 107 NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLL 166
Query: 125 RKGASLTAKTKAGKTPLDLA---RNEEIRSFLEEWEQSSKKPNLNG 167
+ A A K G TPL +A N +I L S P NG
Sbjct: 167 ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNG 212
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH AA+ G + V ++L+S + N +K TPLHL A G V L K+ V A
Sbjct: 249 LHLAAQEGHAEMV-ALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT 307
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
+ +H AS G++++V+ L+ + A T+ G +PLH A Q H ++V LL+ G
Sbjct: 308 TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 367
Query: 128 ASLTAKTKAGKTPLDLAR 145
AS + G TPL +A+
Sbjct: 368 ASPNEVSSDGTTPLAIAK 385
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 84/170 (49%), Gaps = 9/170 (5%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH A +L V+ +L+ S +S + TPLH+AA Q EV L + A
Sbjct: 183 LHVAVHHNNLDIVK-LLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE 241
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
++ ++ +H A+Q+GH E+V L+S + + GL PLH Q H+ + L++ G
Sbjct: 242 SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG 301
Query: 128 ASLTAKTKAGKTPLDLAR---NEEIRSFLEEWEQSSKKPNLNGKEKAGES 174
+ A T+ G TPL +A N ++ FL + + ++N K K G S
Sbjct: 302 VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA-----DVNAKTKLGYS 346
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 72/140 (51%), Gaps = 1/140 (0%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH AA+ G ++ V +L+ N+ K+ TPLH+A ++V L +
Sbjct: 150 LHVAAKYGKVR-VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP 208
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
A + + +H A+++ +EV R+L+ G S A + +G+ PLH A Q H E+V LL K
Sbjct: 209 AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 268
Query: 128 ASLTAKTKAGKTPLDLARNE 147
A+ K+G TPL L E
Sbjct: 269 ANGNLGNKSGLTPLHLVAQE 288
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 1/140 (0%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH AAR G ++ V ++L S K TPLH+AA G+ V L + A AA
Sbjct: 117 LHIAAREGHVETVLALL-EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA 175
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
+ ++ +H A +L++V+ L+ G S + G PLH A + + +E+ + LL+ G
Sbjct: 176 GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 235
Query: 128 ASLTAKTKAGKTPLDLARNE 147
S A++ G TPL LA E
Sbjct: 236 GSANAESVQGVTPLHLAAQE 255
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 1 MGNRE--EELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLC 58
+GN+ LH A+ G + V +LI + + V++ + TPLH+A+ G ++V +L
Sbjct: 273 LGNKSGLTPLHLVAQEGHVP-VADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 331
Query: 59 KNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPL 108
+++ADV A S +H A+Q+GH ++V L+ +G S + G PL
Sbjct: 332 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPL 381
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%)
Query: 72 MSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLT 131
++ +H AS GHL +V+ L+ G S K PLH A + H E+ KYLL+ A +
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 132 AKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNL 165
AK K +TPL A + ++ +++ PNL
Sbjct: 75 AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL 108
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 75/150 (50%), Gaps = 6/150 (4%)
Query: 1 MGNRE--EELHAAARSGDLKAVQSILISNPLSVNSRDKHSR--TPLHLAAWSGQTEVVSY 56
MGN E +L AA++GD++ V+ + SVN RD R TPLH AA + VV Y
Sbjct: 3 MGNSEADRQLLEAAKAGDVETVKKLCTVQ--SVNCRDIEGRQSTPLHFAAGYNRVSVVEY 60
Query: 57 LCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSH 116
L ++ ADV A + +H A GH EV LV G + PLH A
Sbjct: 61 LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK 120
Query: 117 LELVKYLLRKGASLTAKTKAGKTPLDLARN 146
E+ K LL+ GA T K + G TPLDL ++
Sbjct: 121 YEICKLLLQHGADPTKKNRDGNTPLDLVKD 150
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 3/129 (2%)
Query: 2 GNREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNK 61
G + LH AA + V+ L+ + V+++DK PLH A G EV L K+
Sbjct: 40 GRQSTPLHFAAGYNRVSVVE-YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG 98
Query: 62 ADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVK 121
A V A + + +H A+ KG E+ + L+ G R G PL G ++
Sbjct: 99 AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGD--TDIQ 156
Query: 122 YLLRKGASL 130
LLR A+L
Sbjct: 157 DLLRGDAAL 165
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 75/150 (50%), Gaps = 6/150 (4%)
Query: 1 MGNRE--EELHAAARSGDLKAVQSILISNPLSVNSRDKHSR--TPLHLAAWSGQTEVVSY 56
+GN E +L AA++GD++ V+ + SVN RD R TPLH AA + VV Y
Sbjct: 7 LGNSEADRQLLEAAKAGDVETVKKLCTVQ--SVNCRDIEGRQSTPLHFAAGYNRVSVVEY 64
Query: 57 LCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSH 116
L ++ ADV A + +H A GH EV LV G + PLH A
Sbjct: 65 LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK 124
Query: 117 LELVKYLLRKGASLTAKTKAGKTPLDLARN 146
E+ K LL+ GA T K + G TPLDL ++
Sbjct: 125 YEICKLLLQHGADPTKKNRDGNTPLDLVKD 154
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 3/129 (2%)
Query: 2 GNREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNK 61
G + LH AA + V+ L+ + V+++DK PLH A G EV L K+
Sbjct: 44 GRQSTPLHFAAGYNRVSVVE-YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG 102
Query: 62 ADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVK 121
A V A + + +H A+ KG E+ + L+ G R G PL G ++
Sbjct: 103 AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGD--TDIQ 160
Query: 122 YLLRKGASL 130
LLR A+L
Sbjct: 161 DLLRGDAAL 169
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 2 GNRE--EELHAAARSGDLKAVQSILISNPLSVNSRDKHSR--TPLHLAAWSGQTEVVSYL 57
GN E +L AA++GD++ V+ + SVN RD R TPLH AA + VV YL
Sbjct: 6 GNSEADRQLLEAAKAGDVETVKKLCTVQ--SVNCRDIEGRQSTPLHFAAGYNRVSVVEYL 63
Query: 58 CKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHL 117
++ ADV A + +H A GH EV LV G + PLH A
Sbjct: 64 LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKY 123
Query: 118 ELVKYLLRKGASLTAKTKAGKTPLDLARN 146
E+ K LL+ GA T K + G TPLDL ++
Sbjct: 124 EICKLLLQHGADPTKKNRDGNTPLDLVKD 152
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 3/129 (2%)
Query: 2 GNREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNK 61
G + LH AA + V+ L+ + V+++DK PLH A G EV L K+
Sbjct: 42 GRQSTPLHFAAGYNRVSVVE-YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG 100
Query: 62 ADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVK 121
A V A + + +H A+ KG E+ + L+ G R G PL G ++
Sbjct: 101 AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGD--TDIQ 158
Query: 122 YLLRKGASL 130
LLR A+L
Sbjct: 159 DLLRGDAAL 167
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 66/115 (57%), Gaps = 3/115 (2%)
Query: 45 AAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKG 104
AA +GQ + V L N ADV A D ++ +H A+Q GHLE+V L+ G + A G
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 105 LNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA---RNEEIRSFLEEW 156
+ PLH A HLE+V+ LL+ GA + A+ K GKT D++ NE++ L++
Sbjct: 81 ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
AAR+G V+ IL++N VN+ D+ TPLHLAA G E+V L K ADV A
Sbjct: 21 AARAGQDDEVR-ILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNF 79
Query: 71 DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYL 123
++ +H A+ +GHLE+V L+ G + A + G ++ + +L + L
Sbjct: 80 GITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCK 59
LH AA G L+ V+ +L+ + VN++DK +T ++ +G ++ L K
Sbjct: 84 LHLAAIRGHLEIVE-VLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 56/91 (61%)
Query: 38 SRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSI 97
RTPLHLAA +G EVV L + ADV A + + +H A++ GHLEVV+ L+ +G +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 98 KACTRKGLNPLHYAVQGSHLELVKYLLRKGA 128
A + G PLH A + HLE+VK LL GA
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Query: 3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA 62
N LH AAR+G L+ V+ +L+ VN++DK+ RTPLHLAA +G EVV L + A
Sbjct: 1 NGRTPLHLAARNGHLEVVK-LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 63 DVGAAAMDDMSAIHFASQKGHLEVVRTLVSSG 94
DV A + + +H A++ GHLEVV+ L+ +G
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 54/86 (62%), Gaps = 4/86 (4%)
Query: 73 SAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTA 132
+ +H A++ GHLEVV+ L+ +G + A + G PLH A + HLE+VK LL GA + A
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 133 KTKAGKTPLDL-ARN---EEIRSFLE 154
K K G+TPL L ARN E ++ LE
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 10/79 (12%)
Query: 104 GLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDL-ARN---EEIRSFLEEWEQS 159
G PLH A + HLE+VK LL GA + AK K G+TPL L ARN E ++ LE
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG--- 58
Query: 160 SKKPNLNGKEKAGESETKL 178
++N K+K G + L
Sbjct: 59 ---ADVNAKDKNGRTPLHL 74
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 63/121 (52%)
Query: 31 VNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTL 90
+N D+ TPL AA GQ VV +L +N AD SA+ A KG+ ++V+ L
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88
Query: 91 VSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIR 150
+ GV + G PL YAV G+H++ VK LL GA T +T +G +DLA R
Sbjct: 89 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 148
Query: 151 S 151
S
Sbjct: 149 S 149
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 63/121 (52%)
Query: 31 VNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTL 90
+N D+ TPL AA GQ VV +L +N AD SA+ A KG+ ++V+ L
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 104
Query: 91 VSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIR 150
+ GV + G PL YAV G+H++ VK LL GA T +T +G +DLA R
Sbjct: 105 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 164
Query: 151 S 151
S
Sbjct: 165 S 165
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 63/121 (52%)
Query: 31 VNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTL 90
+N D+ TPL AA GQ VV +L +N AD SA+ A KG+ ++V+ L
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 86
Query: 91 VSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIR 150
+ GV + G PL YAV G+H++ VK LL GA T +T +G +DLA R
Sbjct: 87 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 146
Query: 151 S 151
S
Sbjct: 147 S 147
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 33/71 (46%)
Query: 74 AIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAK 133
++H + +G + + T + I +G PL +A + +V++LL+ GA
Sbjct: 4 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 63
Query: 134 TKAGKTPLDLA 144
K ++ L LA
Sbjct: 64 GKGRESALSLA 74
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 73/137 (53%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
+H A G+L ++ L VN D+ TPL A+ G+ E V +L + AD
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
A + SA+ AS G+ ++V L+ V I G PL YAV+G+H++ V+ LL +G
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG 125
Query: 128 ASLTAKTKAGKTPLDLA 144
A LT + +G TP+DLA
Sbjct: 126 ADLTTEADSGYTPMDLA 142
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 72/137 (52%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
+H A G+L ++ L VN D+ TPL A+ G+ E V +L + AD
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
A + SA+ AS G+ ++V L+ V I G PL YAV G+H++ V+ LL +G
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARG 125
Query: 128 ASLTAKTKAGKTPLDLA 144
A LT + +G TP+DLA
Sbjct: 126 ADLTTEADSGYTPMDLA 142
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 45 AAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKG 104
AA +GQ + V L N ADV A + +H A+ GHLE+V L+ +G + A G
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 105 LNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA---RNEEIRSFLEE 155
PLH A HLE+V+ LL+ GA + A+ K GKT D++ NE++ L++
Sbjct: 81 RTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
AAR+G V+ IL +N VN+ D TPLHLAA G E+V L KN ADV A
Sbjct: 21 AARAGQDDEVR-ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNT 79
Query: 71 DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYL 123
+ +H A+ HLE+V L+ G + A + G ++ + +L + L
Sbjct: 80 GRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 59/113 (52%)
Query: 29 LSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVR 88
L VN + +PLH+AA G+ +++ L K+ A+ GA D +H A Q+GH +VV+
Sbjct: 77 LGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVK 136
Query: 89 TLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPL 141
L+ S G PL YA G H ELV LL+ GAS+ A G T L
Sbjct: 137 CLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTAL 189
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 2/148 (1%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH AA G + +L+ + + +R+ PLHLA G +VV L + A
Sbjct: 90 LHVAALHGRADLI-PLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKK 148
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
+ + + +A GH E+V L+ G SI A KG LH AV H+ +V+ LL G
Sbjct: 149 DLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHG 208
Query: 128 ASLTAKTKAGKTPLDLA-RNEEIRSFLE 154
AS+ K +T +D A +N +I L+
Sbjct: 209 ASVQVLNKRQRTAVDCAEQNSKIMELLQ 236
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%)
Query: 92 SSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRS 151
+SG+ + ++ G +PLH A +L+ LL+ GA+ A+ PL LA +
Sbjct: 74 ASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQ 133
Query: 152 FLEEWEQSSKKPN 164
++ S+ KPN
Sbjct: 134 VVKCLLDSNAKPN 146
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 66/116 (56%), Gaps = 7/116 (6%)
Query: 45 AAWSGQTEVVSYLCKNKADVGAAAMDD--MSAIHFASQKGHLEVVRTLVSSGVSIKACTR 102
A +GQ + V L N ADV A MDD ++ +H A+++GHLE+V L+ G + A
Sbjct: 21 ATRAGQDDEVRILMANGADVNA--MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDS 78
Query: 103 KGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA---RNEEIRSFLEE 155
G PLH A HLE+V+ LL GA + A+ K GKT D++ NE++ L++
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
A R+G V+ IL++N VN+ D TPLHLAA G E+V L K+ ADV A+
Sbjct: 21 ATRAGQDDEVR-ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSW 79
Query: 71 DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYL 123
+ +H A+ GHLE+V L+ G + A + G ++ + +L + L
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCK 59
LH AA G L+ V+ +L+ VN++DK +T ++ +G ++ L K
Sbjct: 84 LHLAATVGHLEIVE-VLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 77.0 bits (188), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 66/116 (56%), Gaps = 7/116 (6%)
Query: 45 AAWSGQTEVVSYLCKNKADVGAAAMDD--MSAIHFASQKGHLEVVRTLVSSGVSIKACTR 102
A +GQ + V L N ADV A MDD ++ +H A+++GHLE+V L+ G + A
Sbjct: 21 ATRAGQDDEVRILMANGADVNA--MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDI 78
Query: 103 KGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA---RNEEIRSFLEE 155
G PLH A HLE+V+ LL GA + A+ K GKT D++ NE++ L++
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 1/113 (0%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
A R+G V+ IL++N VN+ D TPLHLAA G E+V L K+ ADV A+ +
Sbjct: 21 ATRAGQDDEVR-ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIW 79
Query: 71 DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYL 123
+ +H A+ GHLE+V L+ G + A + G ++ + +L + L
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCK 59
LH AA G L+ V+ +L+ VN++DK +T ++ +G ++ L K
Sbjct: 84 LHLAATVGHLEIVE-VLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 76/152 (50%), Gaps = 4/152 (2%)
Query: 4 REEELHAAARSGDLKAVQSILISNPLSVNSR--DKHSRTPLHLAAWSGQTEVVSYLCKNK 61
+++EL AARSG+ + + ++L PL+VN D TPLHLAA + +V L ++
Sbjct: 24 KKDELLEAARSGNEEKLMALL--TPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG 81
Query: 62 ADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVK 121
ADV A + +H A GH EV L+ G + A PLH A + +E+
Sbjct: 82 ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCS 141
Query: 122 YLLRKGASLTAKTKAGKTPLDLARNEEIRSFL 153
LL GA T GK+ +D+A E+R L
Sbjct: 142 LLLSHGADPTLVNCHGKSAVDMAPTPELRERL 173
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 5/148 (3%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWS---GQTEVVSYLCKNKADVGAA 67
AAR DL V+ L ++ H T LH A S + +V L + A+V
Sbjct: 185 AAREADLAKVKKTLALEIINFKQPQSH-ETALHCAVASLHPKRKQVAELLLRKGANVNEK 243
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
D M+ +H A+++ H +V+ L G + A G LH A HL+ + LL G
Sbjct: 244 NKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYG 303
Query: 128 ASLTAKTKAGKTPLDLARNEEIRSFLEE 155
+ + + G T + NE ++ L E
Sbjct: 304 SDPSIISLQGFTAAQMG-NEAVQQILSE 330
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 3 NREEELHAAARS--GDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKN 60
+ E LH A S K V +L+ +VN ++K TPLH+AA +V+ L K+
Sbjct: 210 SHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKH 269
Query: 61 KADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSG 94
A + A +A+H A+ GHL+ R L+S G
Sbjct: 270 GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYG 303
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 2 GNREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNK 61
G + LH AA ++ VQ +L+ + V+++DK PLH A G EV L K+
Sbjct: 56 GRKSTPLHLAAGYNRVRIVQ-LLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHG 114
Query: 62 ADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSG 94
A V A + + +H A+ K +EV L+S G
Sbjct: 115 ACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHG 147
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 72/182 (39%), Gaps = 27/182 (14%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH A G + V +L+ + VN+ D TPLH AA + EV S L + AD
Sbjct: 95 LHNACSYGHYE-VTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV 153
Query: 68 AMDDMSAIHFASQ-----------KGH-----------LEVVRTLVSSGVSIKACTRKGL 105
SA+ A KGH +V +TL ++ K +
Sbjct: 154 NCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQ-PQSHE 212
Query: 106 NPLHYAVQGSHL---ELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKK 162
LH AV H ++ + LLRKGA++ K K TPL +A +E + K
Sbjct: 213 TALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK 272
Query: 163 PN 164
N
Sbjct: 273 MN 274
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 66/116 (56%), Gaps = 7/116 (6%)
Query: 45 AAWSGQTEVVSYLCKNKADVGAAAMDD--MSAIHFASQKGHLEVVRTLVSSGVSIKACTR 102
A +GQ + V L N ADV A MDD ++ +H A+++GHLE+V L+ G + A
Sbjct: 21 ATRAGQDDEVRILMANGADVNA--MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDI 78
Query: 103 KGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA---RNEEIRSFLEE 155
G PLH A HLE+V+ LL GA + A+ K GKT D++ NE++ L++
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
A R+G V+ IL++N VN+ D TPLHLAA G E+V L K+ ADV A +
Sbjct: 21 ATRAGQDDEVR-ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIW 79
Query: 71 DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYL 123
+ +H A+ GHLE+V L+ G + A + G ++ + +L + L
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCK 59
LH AA G L+ V+ +L+ VN++DK +T ++ +G ++ L K
Sbjct: 84 LHLAATVGHLEIVE-VLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
Query: 45 AAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKG 104
AA +GQ + V L N ADV A ++ +H A+ HLE+V L+ +G + A G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 105 LNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA---RNEEIRSFLEEW 156
PLH HLE+V+ LL+ GA + A+ K GKT D++ NE++ L++
Sbjct: 81 ETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
AAR+G V+ IL++N VN+ DK TPLHLAA + E+V L KN ADV A
Sbjct: 21 AARAGQDDEVR-ILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAI 79
Query: 71 DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYL 123
+ +H + GHLE+V L+ G + A + G ++ + +L + L
Sbjct: 80 GETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 5 EEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCK 59
E LH A G L+ V+ +L+ + VN++DK +T ++ +G ++ L K
Sbjct: 81 ETPLHLVAMYGHLEIVE-VLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 45 AAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKG 104
AA +GQ + V L N ADV A ++ ++ A+ GHLE+V L+ +G + A G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 105 LNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA---RNEEIRSFLEEW 156
PLH A HLE+ + LL+ GA + A+ K GKT D++ NE++ L++
Sbjct: 81 FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 1/113 (0%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
AAR+G V+ IL++N VN++D++ TPL+LA G E+V L KN ADV A
Sbjct: 21 AARAGQDDEVR-ILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAI 79
Query: 71 DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYL 123
+ +H A+ GHLE+ L+ G + A + G ++ + +L + L
Sbjct: 80 GFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCK 59
LH AA G L+ + +L+ + VN++DK +T ++ +G ++ L K
Sbjct: 84 LHLAAFIGHLE-IAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
Query: 45 AAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKG 104
AA +GQ + V L N ADV A + +H A+ HLE+V L+ G + A G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 105 LNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA---RNEEIRSFLEEW 156
PLH A HLE+V+ LL+ GA + A+ K GKT D++ NE++ L++
Sbjct: 81 STPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 1/113 (0%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
AAR+G V+ IL++N VN+ D+ TPLHLAA E+V L K+ ADV A D
Sbjct: 21 AARAGQDDEVR-ILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDND 79
Query: 71 DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYL 123
+ +H A+ GHLE+V L+ G + A + G ++ + +L + L
Sbjct: 80 GSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCK 59
LH AA G L+ V+ +L+ + VN++DK +T ++ +G ++ L K
Sbjct: 84 LHLAALFGHLEIVE-VLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 76/138 (55%), Gaps = 1/138 (0%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH AA +G + V+++L+ VN+ +++ TPLH AA + E+ L + A+ A
Sbjct: 77 LHIAASAGXDEIVKALLVKGA-HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK 135
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
D +A+H A+ KG+L++V L+ S +G PLH A +E K+L+ +G
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG 195
Query: 128 ASLTAKTKAGKTPLDLAR 145
AS+ + K KTPL +A+
Sbjct: 196 ASIYIENKEEKTPLQVAK 213
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 1/141 (0%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH A +G + V+ L+ + VN +D +PLH+AA +G E+V L A V A
Sbjct: 44 LHWACSAGHTEIVE-FLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAV 102
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
+ + +H+A+ K E+ L+ G + A +H A +L++V LL
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK 162
Query: 128 ASLTAKTKAGKTPLDLARNEE 148
AS + G TPL LA +EE
Sbjct: 163 ASTNIQDTEGNTPLHLACDEE 183
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 62/130 (47%)
Query: 12 ARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDD 71
A SG L ++ ++++ D+ SRT LH A +G TE+V +L + V
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 72 MSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLT 131
S +H A+ G E+V+ L+ G + A + G PLHYA + E+ LL GA+
Sbjct: 74 WSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 132 AKTKAGKTPL 141
AK T +
Sbjct: 134 AKDHYDATAM 143
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 40/75 (53%)
Query: 70 DDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS 129
D +A+H+A GH E+V L+ GV + G +PLH A E+VK LL KGA
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH 98
Query: 130 LTAKTKAGKTPLDLA 144
+ A + G TPL A
Sbjct: 99 VNAVNQNGCTPLHYA 113
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH AA S + + +L+ + +++D + T +H AA G ++V L KA
Sbjct: 110 LHYAA-SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ 168
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLEL 119
+ + +H A + +E + LV+ G SI ++ PL A G L L
Sbjct: 169 DTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLIL 220
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 76/138 (55%), Gaps = 1/138 (0%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH AA +G + V+++L+ VN+ +++ TPLH AA + E+ L + A+ A
Sbjct: 77 LHIAASAGRDEIVKALLVKGA-HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK 135
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
D +A+H A+ KG+L++V L+ S +G PLH A +E K+L+ +G
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG 195
Query: 128 ASLTAKTKAGKTPLDLAR 145
AS+ + K KTPL +A+
Sbjct: 196 ASIYIENKEEKTPLQVAK 213
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 1/141 (0%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH A +G + V+ L+ + VN +D +PLH+AA +G+ E+V L A V A
Sbjct: 44 LHWACSAGHTEIVE-FLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAV 102
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
+ + +H+A+ K E+ L+ G + A +H A +L++V LL
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK 162
Query: 128 ASLTAKTKAGKTPLDLARNEE 148
AS + G TPL LA +EE
Sbjct: 163 ASTNIQDTEGNTPLHLACDEE 183
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 62/130 (47%)
Query: 12 ARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDD 71
A SG L ++ ++++ D+ SRT LH A +G TE+V +L + V
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 72 MSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLT 131
S +H A+ G E+V+ L+ G + A + G PLHYA + E+ LL GA+
Sbjct: 74 WSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 132 AKTKAGKTPL 141
AK T +
Sbjct: 134 AKDHYDATAM 143
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 40/75 (53%)
Query: 70 DDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS 129
D +A+H+A GH E+V L+ GV + G +PLH A E+VK LL KGA
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAH 98
Query: 130 LTAKTKAGKTPLDLA 144
+ A + G TPL A
Sbjct: 99 VNAVNQNGCTPLHYA 113
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH AA S + + +L+ + +++D + T +H AA G ++V L KA
Sbjct: 110 LHYAA-SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ 168
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLEL 119
+ + +H A + +E + LV+ G SI ++ PL A G L L
Sbjct: 169 DTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLIL 220
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 56/99 (56%)
Query: 36 KHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGV 95
K TPLH AA +G E V L ADV A + D + +H A++ GH E+V+ L++ G
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 96 SIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKT 134
+ A ++ G P H A + H E+VK L KGA + A++
Sbjct: 67 DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 70 DDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS 129
D + +H A++ GH E V+ L+S G + A ++ G PLH A + H E+VK LL KGA
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 130 LTAKTKAGKTPLDLAR---NEEIRSFLE 154
+ A++K G TP LA+ + EI L+
Sbjct: 68 VNARSKDGNTPEHLAKKNGHHEIVKLLD 95
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH AA++G + V+ +L S VN+R K TPLHLAA +G E+V L ADV A
Sbjct: 13 LHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR 71
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKA 99
+ D + H A + GH E+V+ L + G + A
Sbjct: 72 SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 28/44 (63%)
Query: 101 TRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
++ G PLH A + H E VK LL KGA + A++K G TPL LA
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLA 49
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 73/132 (55%), Gaps = 2/132 (1%)
Query: 3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA 62
N+ LHAAA +G + + +L+ ++++ + RTPL AA + E V YL K A
Sbjct: 10 NKRSPLHAAAEAGHVD-ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68
Query: 63 DVGAAAMDDMSAIHFASQKGHLEVVRTLVSSG-VSIKACTRKGLNPLHYAVQGSHLELVK 121
V + + +H A++KGH EVV+ L+S+G + + G P+ +A + H++LVK
Sbjct: 69 LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 128
Query: 122 YLLRKGASLTAK 133
LL KG+ + +
Sbjct: 129 LLLSKGSDINIR 140
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 74/148 (50%), Gaps = 1/148 (0%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH AA+ G + VQ +L + + VN +D TP+ A ++V L +D+
Sbjct: 81 LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIR 140
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
++ +H+A+ G +++ L+++ + A G +PLH A + + + V L +
Sbjct: 141 DNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRD 200
Query: 128 ASLTAKTKAGKTPLDLAR-NEEIRSFLE 154
+ +T K K G+TPL A N ++ S L+
Sbjct: 201 SDVTLKNKEGETPLQCASLNSQVWSALQ 228
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 73 SAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTA 132
S +H A++ GH+++ LV +G +I C+ PL A + +HLE VKYL++ GA +
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 133 KTKAGKTPLDLA 144
K G T L LA
Sbjct: 73 KDAEGSTCLHLA 84
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 36 KHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGV 95
++ R+PLH AA +G ++ L + A++ + D + + A++ HLE V+ L+ +G
Sbjct: 9 QNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68
Query: 96 SIKACTRKGLNPLHYAVQGSHLELVKYLLRKG-ASLTAKTKAGKTPL 141
+ +G LH A + H E+V+YLL G + + G TP+
Sbjct: 69 LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM 115
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 1/150 (0%)
Query: 6 EELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVG 65
+++ R G+ AV+ L + +N D H +PLH A G++ VV L A +
Sbjct: 2 DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN 61
Query: 66 AAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLR 125
D + +H A+ GH ++V+ L+ I A G PLHYA ++ + L+
Sbjct: 62 VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVA 121
Query: 126 KGASLTAKTKAGKTPLDLARNEEIRSFLEE 155
GA ++ K G+ P+D A+ +R L E
Sbjct: 122 NGALVSICNKYGEMPVDKAK-APLRELLRE 150
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 1/150 (0%)
Query: 6 EELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVG 65
+++ R G+ AV+ L + +N D H +PLH A G++ VV L A +
Sbjct: 7 DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN 66
Query: 66 AAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLR 125
D + +H A+ GH ++V+ L+ I A G PLHYA ++ + L+
Sbjct: 67 VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVA 126
Query: 126 KGASLTAKTKAGKTPLDLARNEEIRSFLEE 155
GA ++ K G+ P+D A+ +R L E
Sbjct: 127 NGALVSICNKYGEMPVDKAK-APLRELLRE 155
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%)
Query: 48 SGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNP 107
SG TE V L + AD+ A +D ++A+H A ++++V+ LV +G +I +G P
Sbjct: 50 SGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIP 109
Query: 108 LHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDL 143
LH A +L++ +YL+ +GA + A G TPLD+
Sbjct: 110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 73 SAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTA 132
+A+H A+ KG+ EV++ L+ + + G PLH A E + L+ + A
Sbjct: 201 TALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA 260
Query: 133 KTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEK 170
K G+T D+A +E+I +LEE + KK NL EK
Sbjct: 261 VNKVGQTAFDVA-DEDILGYLEELQ---KKQNLLHSEK 294
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 10 AAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAM 69
AA SGD + V +L +N + T LH A ++V +L +N A++
Sbjct: 46 AACSSGDTEEVLRLL-ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN 104
Query: 70 DDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPL 108
+ +H A+ G+L++ L+S G + A +G PL
Sbjct: 105 EGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPL 143
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%)
Query: 69 MDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGA 128
DD + A G E V L+ G I GL LH A ++++VK+L+ GA
Sbjct: 38 FDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGA 97
Query: 129 SLTAKTKAGKTPL 141
++ G PL
Sbjct: 98 NINQPDNEGWIPL 110
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%)
Query: 12 ARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDD 71
A SG L+ ++ ++++ D+ SRT LH A +G TE+V +L + V
Sbjct: 15 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 74
Query: 72 MSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLT 131
S +H A+ G E+V+ L+ G + A + G PLHYA + E+ LL GA+
Sbjct: 75 WSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 134
Query: 132 AK 133
AK
Sbjct: 135 AK 136
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 1/141 (0%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH A +G + V+ L+ + VN +D +PLH+AA +G+ E+V L A V A
Sbjct: 45 LHWACSAGHTEIVE-FLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV 103
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
+ + +H+A+ K E+ L+ G + A +H A +L+++ LL
Sbjct: 104 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYK 163
Query: 128 ASLTAKTKAGKTPLDLARNEE 148
AS + G TPL LA +EE
Sbjct: 164 ASTNIQDTEGNTPLHLACDEE 184
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 1/138 (0%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH AA +G + V+++L VN+ +++ TPLH AA + E+ L + A+ A
Sbjct: 78 LHIAASAGRDEIVKALL-GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK 136
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
+ +A+H A+ KG+L+++ L+ S +G PLH A +E K L+ +G
Sbjct: 137 DHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG 196
Query: 128 ASLTAKTKAGKTPLDLAR 145
AS+ + K KTPL +A+
Sbjct: 197 ASIYIENKEEKTPLQVAK 214
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 40/75 (53%)
Query: 70 DDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS 129
D +A+H+A GH E+V L+ GV + G +PLH A E+VK LL KGA
Sbjct: 40 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQ 99
Query: 130 LTAKTKAGKTPLDLA 144
+ A + G TPL A
Sbjct: 100 VNAVNQNGCTPLHYA 114
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH AA S + + +L+ + +++D + T +H AA G +++ L KA
Sbjct: 111 LHYAA-SKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQ 169
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLEL 119
+ + +H A + +E + LVS G SI ++ PL A G L L
Sbjct: 170 DTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLIL 221
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%)
Query: 12 ARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDD 71
A SG L+ ++ ++++ D+ SRT LH A +G TE+V +L + V
Sbjct: 14 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 72 MSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLT 131
S +H A+ G E+V+ L+ G + A + G PLHYA + E+ LL GA+
Sbjct: 74 WSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 132 AK 133
AK
Sbjct: 134 AK 135
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 1/141 (0%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH A +G + V+ L+ + VN +D +PLH+AA +G+ E+V L A V A
Sbjct: 44 LHWACSAGHTEIVE-FLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV 102
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
+ + +H+A+ K E+ L+ G + A +H A +L+++ LL
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYK 162
Query: 128 ASLTAKTKAGKTPLDLARNEE 148
AS + G TPL LA +EE
Sbjct: 163 ASTNIQDTEGNTPLHLACDEE 183
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 1/138 (0%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH AA +G + V+++L VN+ +++ TPLH AA + E+ L + A+ A
Sbjct: 77 LHIAASAGRDEIVKALL-GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK 135
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
+ +A+H A+ KG+L+++ L+ S +G PLH A +E K L+ +G
Sbjct: 136 DHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG 195
Query: 128 ASLTAKTKAGKTPLDLAR 145
AS+ + K KTPL +A+
Sbjct: 196 ASIYIENKEEKTPLQVAK 213
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 40/75 (53%)
Query: 70 DDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS 129
D +A+H+A GH E+V L+ GV + G +PLH A E+VK LL KGA
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQ 98
Query: 130 LTAKTKAGKTPLDLA 144
+ A + G TPL A
Sbjct: 99 VNAVNQNGCTPLHYA 113
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH AA S + + +L+ + +++D + T +H AA G +++ L KA
Sbjct: 110 LHYAA-SKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQ 168
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLEL 119
+ + +H A + +E + LVS G SI ++ PL A G L L
Sbjct: 169 DTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLIL 220
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 56/114 (49%)
Query: 40 TPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKA 99
T LH+A+ G V YL +N +D + +H A GHL+VV L+ +
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71
Query: 100 CTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFL 153
+ +PLH A + H+++VK LL GAS A G P+D +E ++S L
Sbjct: 72 TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLL 125
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Query: 5 EEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADV 64
E LH A+ GD+ +V+ L+ N N +D TPLH A G +VV L ++KA V
Sbjct: 11 ETLLHIASIKGDIPSVE-YLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 65 GAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYA 111
+ S +H A++ GH+++V+ L+S G S A GL P+ Y
Sbjct: 70 NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYT 116
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 102 RKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNE 147
+G LH A + V+YLL+ G+ K AG TPL A N
Sbjct: 8 HRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNH 53
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH A + VQ +L S P + +D+ R PLH + E+ S+L +V
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 68 AMDD---MSAIHFASQKGHLEVVRTLVSSGV--SIKACTRKGLNPLHYAVQGSHLELVKY 122
D + H A G+LEVV++L + + T +G+ LH AV E+ ++
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 123 LLRKGASLTAKTKAGKTPL 141
L+ GAS+ K K + PL
Sbjct: 126 LIENGASVRIKDKFNQIPL 144
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 6/128 (4%)
Query: 20 VQSILISNPLSVN---SRDKHSRTPLHLAAWSGQTEVVSYLCKN--KADVGAAAMDDMSA 74
+ S L+S +VN D TP H+A G EVV L K D+ ++
Sbjct: 51 ITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTC 110
Query: 75 IHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS-LTAK 133
+H A K EV + L+ +G S++ + PLH A L+L++ L G S + +
Sbjct: 111 LHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQ 170
Query: 134 TKAGKTPL 141
K G TPL
Sbjct: 171 DKQGWTPL 178
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 33/135 (24%)
Query: 20 VQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFAS 79
V LI N SV +DK ++ PLH AA G +++ LC +G +A++
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC----GLGKSAVNWQD------ 171
Query: 80 QKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK-GASLTAKTKAGK 138
++G PL +A+ H + L+ K GA G
Sbjct: 172 ----------------------KQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGA 209
Query: 139 TPLDLARNEEIRSFL 153
D+A NE+++ F
Sbjct: 210 KAEDVALNEQVKKFF 224
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH A + VQ +L S P + +D+ R PLH + E+ S+L +V
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 68 AMDD---MSAIHFASQKGHLEVVRTLVSSGV--SIKACTRKGLNPLHYAVQGSHLELVKY 122
D + H A G+LEVV++L + + T +G+ LH AV E+ ++
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 123 LLRKGASLTAKTKAGKTPL 141
L+ GAS+ K K + PL
Sbjct: 126 LIENGASVRIKDKFNQIPL 144
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 6/128 (4%)
Query: 20 VQSILISNPLSVN---SRDKHSRTPLHLAAWSGQTEVVSYLCKN--KADVGAAAMDDMSA 74
+ S L+S +VN D TP H+A G EVV L K D+ ++
Sbjct: 51 ITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTC 110
Query: 75 IHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS-LTAK 133
+H A K EV + L+ +G S++ + PLH A L+L++ L G S + +
Sbjct: 111 LHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQ 170
Query: 134 TKAGKTPL 141
K G TPL
Sbjct: 171 DKQGWTPL 178
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 33/135 (24%)
Query: 20 VQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFAS 79
V LI N SV +DK ++ PLH AA G +++ LC +G +A++
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC----GLGKSAVNWQD------ 171
Query: 80 QKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK-GASLTAKTKAGK 138
++G PL +A+ H + L+ K GA G
Sbjct: 172 ----------------------KQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGA 209
Query: 139 TPLDLARNEEIRSFL 153
D+A NE+++ F
Sbjct: 210 KAEDVALNEQVKKFF 224
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH A + VQ +L S P + +D+ R PLH + E+ S+L +V
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 68 AMDD---MSAIHFASQKGHLEVVRTLVSSGV--SIKACTRKGLNPLHYAVQGSHLELVKY 122
D + H A G+LEVV++L + + T +G+ LH AV E+ ++
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 123 LLRKGASLTAKTKAGKTPL 141
L+ GAS+ K K + PL
Sbjct: 126 LIENGASVRIKDKFNQIPL 144
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 6/128 (4%)
Query: 20 VQSILISNPLSVN---SRDKHSRTPLHLAAWSGQTEVVSYLCKN--KADVGAAAMDDMSA 74
+ S L+S +VN D TP H+A G EVV L K D+ ++
Sbjct: 51 ITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTC 110
Query: 75 IHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS-LTAK 133
+H A K EV + L+ +G S++ + PLH A L+L++ L G S + +
Sbjct: 111 LHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQ 170
Query: 134 TKAGKTPL 141
K G TPL
Sbjct: 171 DKQGWTPL 178
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 33/135 (24%)
Query: 20 VQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFAS 79
V LI N SV +DK ++ PLH AA G +++ LC +G +A++
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC----GLGKSAVNWQD------ 171
Query: 80 QKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK-GASLTAKTKAGK 138
++G PL +A+ H + L+ K GA G
Sbjct: 172 ----------------------KQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGA 209
Query: 139 TPLDLARNEEIRSFL 153
D+A NE+++ F
Sbjct: 210 KAEDVALNEQVKKFF 224
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 5/147 (3%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
AAR+G V+ IL++N + D +PLHLAA G L + A
Sbjct: 9 AARAGQDDEVR-ILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKV 66
Query: 71 DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
D + +H A+ +GH +V L+ G + A + LH+A + +H E+V+ L++ GA +
Sbjct: 67 DRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV 126
Query: 131 TAKTKAGKTPLDLAR---NEEIRSFLE 154
++K KT D++ NE++ L+
Sbjct: 127 HTQSKFCKTAFDISIDNGNEDLAEILQ 153
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 83/190 (43%), Gaps = 36/190 (18%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH A G L V+ IL+ + VN TPL A SG + V+ L ++ A V
Sbjct: 96 LHEACLGGHLSCVK-ILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE 154
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSI-------------------KACTRKGL--- 105
+ D S IH A+++GH+E V +L++ G +I +AC +K L
Sbjct: 155 S-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213
Query: 106 ----------NPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEE--IRSFL 153
+PLH V+ + EL L+ GA AK GK P++L E + FL
Sbjct: 214 ADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFL 273
Query: 154 EEWEQSSKKP 163
E S KP
Sbjct: 274 EREGASLPKP 283
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 40/74 (54%)
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
A+ D S +H A+ GH +R L+S G ++ T ++PLH A G HL VK LL+ G
Sbjct: 56 AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG 115
Query: 128 ASLTAKTKAGKTPL 141
A + T TPL
Sbjct: 116 AQVNGVTADWHTPL 129
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 87/202 (43%), Gaps = 14/202 (6%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
+H AA G ++++ LIS +VN +PLH A G V L K+ A V
Sbjct: 63 MHEAAIHGHQLSLRN-LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 121
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
D + + A G + V L+ G S++ + +P+H A + H+E V L+ G
Sbjct: 122 TADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAYG 180
Query: 128 ASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEK-----------AGESET 176
++ K TPL LA + R+ +++ +S N GK + + E
Sbjct: 181 GNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELAC 239
Query: 177 KLGDSGVEVSASSPDGKRDENL 198
L D G + A + +GKR L
Sbjct: 240 LLMDFGADTQAKNAEGKRPVEL 261
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 2/111 (1%)
Query: 24 LISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGH 83
L+SNPL ++ S P+H AA G + L V D +S +H A GH
Sbjct: 47 LLSNPLMGDAVSDWS--PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGH 104
Query: 84 LEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKT 134
L V+ L+ G + T PL A + V LL+ GAS+ ++
Sbjct: 105 LSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES 155
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 78 ASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAG 137
A++ G + VR L+++G + A + G PLH A + HLE+V+ LL+ GA + A+ K G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 138 KTPLDLA---RNEEIRSFLE 154
KT D++ NE++ L+
Sbjct: 69 KTAFDISIDNGNEDLAEILQ 88
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGA 66
AAR+G V+ IL++N VN++DK TPLHLAA G E+V L K ADV A
Sbjct: 9 AARAGQDDEVR-ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 63
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%)
Query: 45 AAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKG 104
AA +GQ + V L N ADV A D + +H A+++GHLE+V L+ +G + A + G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 105 LNPLHYAVQGSHLELVKYL 123
++ + +L + L
Sbjct: 69 KTAFDISIDNGNEDLAEIL 87
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCK 59
LH AAR G L+ V+ +L+ VN++DK +T ++ +G ++ L K
Sbjct: 39 LHLAAREGHLEIVE-VLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 89
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 78 ASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAG 137
A++ G + VR L+++G + A + G PLH A + HLE+VK LL GA + A+ K G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 138 KTPLDLA---RNEEIRSFLE 154
KT D++ NE++ L+
Sbjct: 73 KTAFDISIDNGNEDLAEILQ 92
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%)
Query: 45 AAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKG 104
AA +GQ + V L N ADV A + + +H A++ GHLEVV+ L+ +G + A + G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 105 LNPLHYAVQGSHLELVKYL 123
++ + +L + L
Sbjct: 73 KTAFDISIDNGNEDLAEIL 91
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGA 66
AAR+G V+ IL++N V ++DK+ TPLHLAA +G EVV L + ADV A
Sbjct: 13 AARAGQDDEVR-ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNA 67
Score = 30.4 bits (67), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYL 57
LH AAR+G L+ V+ +L+ VN++DK +T ++ +G ++ L
Sbjct: 43 LHLAARNGHLEVVK-LLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 78 ASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAG 137
A++ G + VR L+++G + A + G PLH A + HLE+VK LL GA + A+ K G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 138 KTPLDLA---RNEEIRSFLE 154
KT D++ NE++ L+
Sbjct: 91 KTAFDISIDNGNEDLAEILQ 110
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%)
Query: 45 AAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKG 104
AA +GQ + V L N ADV A + + +H A++ GHLEVV+ L+ +G + A + G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 105 LNPLHYAVQGSHLELVKYL 123
++ + +L + L
Sbjct: 91 KTAFDISIDNGNEDLAEIL 109
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGA 66
AAR+G V+ IL++N V ++DK+ TPLHLAA +G EVV L + ADV A
Sbjct: 31 AARAGQDDEVR-ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXA 85
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYL 57
N LH AAR+G L+ V+ +L+ V ++DK +T ++ +G ++ L
Sbjct: 56 NGSTPLHLAARNGHLEVVK-LLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 24 LISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD-DMSAIHFASQKG 82
L+ V DK + T LH AA + + ++V Y A V D + + +H+A+++G
Sbjct: 28 LVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQG 87
Query: 83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLD 142
HL +V L+ G +G + +H A Q H +V YL+ KG + + G TPL
Sbjct: 88 HLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLM 147
Query: 143 LA 144
A
Sbjct: 148 WA 149
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 10/164 (6%)
Query: 8 LHAAARSGDLKAVQSILI--SNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVG 65
LH A R G L V ++ ++P + D + +HLAA G T +V+YL DV
Sbjct: 80 LHWATRQGHLSMVVQLMKYGADPSLI---DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD 136
Query: 66 AAAMDDMSAIHFASQKGH-LEVVRTLVSSGVSIKACTRKGLNP-LHYAVQGSHLELVKYL 123
+ M+ + +A+ + H ++ R L++ VS+ + N LH+AV + ++ L
Sbjct: 137 MMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLL 196
Query: 124 LRKGASLTAKTKAGKTPLDLA---RNEEIRSFLEEWEQSSKKPN 164
L GA++ A+ G++ LDLA +N + + L+E Q+ N
Sbjct: 197 LEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 69 MDDMSA--IHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
+DD S I A+Q G E R LV +G ++ ++ + LH+A + ++LVKY + K
Sbjct: 5 IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISK 64
Query: 127 GASL-TAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNL 165
GA + TPL A + S + + + P+L
Sbjct: 65 GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSL 104
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 64/127 (50%), Gaps = 4/127 (3%)
Query: 32 NSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLV 91
N RD ++RTPL +A G + L +N + ++ +A+ +A + L + L+
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 92 SSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA----RNE 147
S G ++ G PL +++ + E+ +LL GA++ + G+TPL +A R+E
Sbjct: 89 SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSE 148
Query: 148 EIRSFLE 154
++ LE
Sbjct: 149 IVKKLLE 155
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%)
Query: 24 LISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGH 83
L+S +VN++D +TPL + G +E+ +L ++ A+V ++ + + AS+ G
Sbjct: 87 LLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGR 146
Query: 84 LEVVRTLVSSGVSIKACTRKGL 105
E+V+ L+ G I A GL
Sbjct: 147 SEIVKKLLELGADISARDLTGL 168
Score = 33.9 bits (76), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 23 ILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG 82
L+ + +VN R+ TPL +A+ G++E+V L + AD+ A + ++A A G
Sbjct: 119 FLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFG 178
Query: 83 HLEVVRTL 90
EV++
Sbjct: 179 RQEVIKIF 186
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 79/181 (43%), Gaps = 36/181 (19%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH A G L V+ IL+ + VN TPL A SG + V+ L ++ A V
Sbjct: 40 LHEACLGGHLSCVK-ILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE 98
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSI-------------------KACTRKGL--- 105
+ D S IH A+++GH+E V +L++ G +I +AC +K L
Sbjct: 99 S-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 157
Query: 106 ----------NPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEE--IRSFL 153
+PLH + + EL L+ GA AK GK P++L E + FL
Sbjct: 158 ADVNQGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFL 217
Query: 154 E 154
E
Sbjct: 218 E 218
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 39/73 (53%)
Query: 69 MDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGA 128
M D S +H A+ GH +R L+S G ++ T ++PLH A G HL VK LL+ GA
Sbjct: 1 MSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 60
Query: 129 SLTAKTKAGKTPL 141
+ T TPL
Sbjct: 61 QVNGVTADWHTPL 73
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 12/201 (5%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
+H AA G ++++ LIS +VN +PLH A G V L K+ A V
Sbjct: 7 MHEAAIHGHQLSLRN-LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 65
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
D + + A G + V L+ G S++ + +P+H A + H+E V L+ G
Sbjct: 66 TADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAYG 124
Query: 128 ASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPN--------LNGKEKAGESE--TK 177
++ K TPL LA + R+ +++ +S N L+ + E
Sbjct: 125 GNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVARTASEELACL 184
Query: 178 LGDSGVEVSASSPDGKRDENL 198
L D G + A + +GKR L
Sbjct: 185 LMDFGADTQAKNAEGKRPVEL 205
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 40/95 (42%)
Query: 40 TPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKA 99
+P+H AA G + L V D +S +H A GHL V+ L+ G +
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 100 CTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKT 134
T PL A + V LL+ GAS+ ++
Sbjct: 65 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES 99
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 52 EVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYA 111
EV Y+ K + DV +H+A+ G LE++ L+ G I A + + PL A
Sbjct: 17 EVKDYVAKGE-DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSA 75
Query: 112 VQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLE 154
V H+ VK LL KGA T K G T L+ N+ I++ L+
Sbjct: 76 VYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQAIKALLQ 118
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 5 EEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADV 64
++E A ++GDL V+ ++ VN + R PLH AA GQ E++ +L AD+
Sbjct: 3 DKEFMWALKNGDLDEVKDY-VAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 61
Query: 65 GAAAMDDMSAIHFASQKGHLEVVRTLVSSG 94
A ++ + A +GH+ V+ L+S G
Sbjct: 62 NAPDKHHITPLLSAVYEGHVSCVKLLLSKG 91
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%)
Query: 77 FASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKA 136
+A + G L+ V+ V+ G + G PLHYA LE++++LL KGA + A K
Sbjct: 8 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 67
Query: 137 GKTPL 141
TPL
Sbjct: 68 HITPL 72
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 34 RDKHSRTPLHL---AAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTL 90
R K + PL L ++ G+ ++V + D + ++A+H A GH E+V+ L
Sbjct: 30 RVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFL 89
Query: 91 VSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKT 134
V GV++ A G PLH A +++++ K+L+ GA++ A T
Sbjct: 90 VQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT 133
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 78 ASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAG 137
+S +G ++V+ ++ +G+ LH AV H E+VK+L++ G ++ A G
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103
Query: 138 KTPLDLA---RNEEIRSFLEE 155
TPL A N ++ FL E
Sbjct: 104 WTPLHCAASCNNVQVCKFLVE 124
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH A +G + V+ L+ ++VN+ D TPLH AA +V +L ++ A V A
Sbjct: 74 LHNAVCAGHTEIVK-FLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM 132
Query: 68 AMDDM 72
DM
Sbjct: 133 TYSDM 137
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 52 EVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYA 111
EV Y+ K + DV +H+A+ G LE++ L+ G I A + + PL A
Sbjct: 22 EVKDYVAKGE-DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSA 80
Query: 112 VQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLE 154
V H+ VK LL KGA T K G T + N+ I++ L+
Sbjct: 81 VYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 5 EEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADV 64
++E A ++GDL V+ ++ VN + R PLH AA GQ E++ +L AD+
Sbjct: 8 DKEFMWALKNGDLDEVKDY-VAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 66
Query: 65 GAAAMDDMSAIHFASQKGHLEVVRTLVSSG 94
A ++ + A +GH+ V+ L+S G
Sbjct: 67 NAPDKHHITPLLSAVYEGHVSCVKLLLSKG 96
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%)
Query: 77 FASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKA 136
+A + G L+ V+ V+ G + G PLHYA LE++++LL KGA + A K
Sbjct: 13 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 72
Query: 137 GKTPL 141
TPL
Sbjct: 73 HITPL 77
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 28/155 (18%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADV------ 64
AA +G +K ++ + +S VN D + T AA G+ + + +L K A+V
Sbjct: 79 AAIAGSVKLLK-LFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT 137
Query: 65 ----------GAAAMDDMSAIHFASQKGHLEVVRTLVSS-GVSIKACTRKGLNPLHYAV- 112
GA A+ D A++KGH+EV++ L+ G + AC G N L +A+
Sbjct: 138 KEDQERLRKGGATALMD------AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALL 191
Query: 113 --QGSHLELVKYLLRK-GASLTAKTKAGKTPLDLA 144
S +E + +LL GA + + + GKTPL LA
Sbjct: 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA 226
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 67 AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKG-LNPLHYAVQGSHLELVKYLLR 125
AA++D + A Q +++V+ L+ G ++ +G PLH AVQ S ++V+ LLR
Sbjct: 1 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60
Query: 126 KGASLTAKTKAGKTPLDLA 144
GA + K G TP LA
Sbjct: 61 HGADPVLRKKNGATPFLLA 79
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSR-TPLHLAAWSGQTEVVSYLCKNKADVGAAAM 69
A ++ D+ VQ +L +VN +++ TPLH A + ++V L ++ AD
Sbjct: 12 AVQNEDVDLVQQLL-EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK 70
Query: 70 DDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS 129
+ + A+ G +++++ +S G + C G A ++ +K+L ++GA+
Sbjct: 71 NGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN 130
Query: 130 LTAKTK 135
+ + K
Sbjct: 131 VNLRRK 136
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 2/139 (1%)
Query: 6 EELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVG 65
+ L AA GD++ V+ +L + ++ ++ +T L + + G T + L K A
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPN 62
Query: 66 AAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLR 125
S +H A++ G L+ ++ LV G + G P+H AVQ H +V +L
Sbjct: 63 VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 122
Query: 126 KGASLTAKTKAGKTPLDLA 144
+ + L + G TPL+LA
Sbjct: 123 E-SDLHRRDARGLTPLELA 140
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%)
Query: 49 GQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPL 108
G+ ++V + D + ++A+H A GH E+V+ LV GV++ A G PL
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Query: 109 HYAVQGSHLELVKYLLRKGASLTAKT 134
H A +++++ K+L+ GA++ A T
Sbjct: 108 HCAASCNNVQVCKFLVESGAAVFAMT 133
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 15 GDLKAVQSIL--ISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDM 72
G+ VQ I+ + +P N T LH A +G TE+V +L + +V AA D
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDE---GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGW 104
Query: 73 SAIHFASQKGHLEVVRTLVSSGVSIKACT 101
+ +H A+ +++V + LV SG ++ A T
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGAAVFAMT 133
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 78 ASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAG 137
+S +G ++V+ ++ +G+ LH AV H E+VK+L++ G ++ A G
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103
Query: 138 KTPLDLA---RNEEIRSFLEE 155
TPL A N ++ FL E
Sbjct: 104 WTPLHCAASCNNVQVCKFLVE 124
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH A +G + V+ L+ ++VN+ D TPLH AA +V +L ++ A V A
Sbjct: 74 LHNAVCAGHTEIVK-FLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM 132
Query: 68 AMDDM 72
DM
Sbjct: 133 TYSDM 137
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 28/155 (18%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADV------ 64
AA +G +K ++ + +S VN D + T AA G+ + + +L K A+V
Sbjct: 99 AAIAGSVKLLK-LFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT 157
Query: 65 ----------GAAAMDDMSAIHFASQKGHLEVVRTLVSS-GVSIKACTRKGLNPLHYAV- 112
GA A+ D A++KGH+EV++ L+ G + AC G N L +A+
Sbjct: 158 KEDQERLRKGGATALMD------AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALL 211
Query: 113 --QGSHLELVKY-LLRKGASLTAKTKAGKTPLDLA 144
S +E + + LL GA + + + GKTPL LA
Sbjct: 212 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA 246
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 67 AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKG-LNPLHYAVQGSHLELVKYLLR 125
AA++D + A Q +++V+ L+ G ++ +G PLH AVQ S ++V+ LLR
Sbjct: 21 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 80
Query: 126 KGASLTAKTKAGKTPLDLA 144
GA + K G TP LA
Sbjct: 81 HGADPVLRKKNGATPFILA 99
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
Query: 11 AARSGDLKAVQSILISNPLSVNSRDKHSR-TPLHLAAWSGQTEVVSYLCKNKADVGAAAM 69
A ++ D+ VQ +L +VN +++ TPLH A + ++V L ++ AD
Sbjct: 32 AVQNEDVDLVQQLL-EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK 90
Query: 70 DDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS 129
+ + A+ G +++++ +S G + C G A ++ +K+L ++GA+
Sbjct: 91 NGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN 150
Query: 130 LTAKTK 135
+ + K
Sbjct: 151 VNLRRK 156
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 2/139 (1%)
Query: 6 EELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVG 65
+ L AA GD++ V+ +L + ++ ++ +T L + + G T + L K A
Sbjct: 10 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPN 68
Query: 66 AAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLR 125
S +H A++ G L+ ++ LV G + G P+H AVQ H +V +L
Sbjct: 69 VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 128
Query: 126 KGASLTAKTKAGKTPLDLA 144
+ + L + G TPL+LA
Sbjct: 129 E-SDLHRRDARGLTPLELA 146
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
Query: 4 REEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA- 62
R+ LH A + L +V +L++ S + D+H +T HLA + L + A
Sbjct: 46 RQTPLHLAVIT-TLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAP 104
Query: 63 ---DVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKAC-TRKGLNPLHYAVQGSHLE 118
D+ A D ++A+H A E V+ L+ G I A + G +PL +AV+ + L
Sbjct: 105 GTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS 164
Query: 119 LVKYLLRKGASLTAKTKAGKTPL 141
+V+ LL+ GA++ A+ +G + L
Sbjct: 165 MVQLLLQHGANVNAQMYSGSSAL 187
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Query: 29 LSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDD-MSAIHFASQKGHLEVV 87
L + +R+ T LH+A + E V L + AD+ A + S + A + L +V
Sbjct: 107 LDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV 166
Query: 88 RTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNE 147
+ L+ G ++ A G + LH A L LV+ L+R GA + K TPL +AR+
Sbjct: 167 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR 226
Query: 148 EIRSFL 153
+ L
Sbjct: 227 RVIDIL 232
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRD-KHSRTPLHLAAWSGQTEVVSYLCKNKADVGA 66
LH A + + VQ +L+ +++ D K R+PL A + +V L ++ A+V A
Sbjct: 120 LHVAVNTECQETVQ-LLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA 178
Query: 67 AAMDDMSAIHFASQKGHLEVVRTLVSSGV--SIKAC 100
SA+H AS +G L +VRTLV SG S+K C
Sbjct: 179 QMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC 214
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 52/129 (40%), Gaps = 10/129 (7%)
Query: 35 DKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD-----DMSAIHFASQKGHLEVVRT 89
D+ TPLH+A G V L N G +D + +H A VVR
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLV-NLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL 64
Query: 90 LVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS----LTAKTKAGKTPLDLAR 145
LV++G S A R G H A + ++ LL A L A+ G T L +A
Sbjct: 65 LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 124
Query: 146 NEEIRSFLE 154
N E + ++
Sbjct: 125 NTECQETVQ 133
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 32 NSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA-DVGAAAMDDMSAIHFASQKGHLEVVRTL 90
NS+D RTPLH A + V L +N+A ++ A D + + A++ +V L
Sbjct: 78 NSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDL 137
Query: 91 VSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNE 147
+++ I A G LH+A ++ E V LL A+ A+ +TPL LA E
Sbjct: 138 ITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAARE 194
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 59/137 (43%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LHAA + + Q +L + ++N+R TPL LAA +V L AD+ AA
Sbjct: 88 LHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAA 147
Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
+A+H+A+ + E V L+ + A K PL A + E K LL
Sbjct: 148 DNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNF 207
Query: 128 ASLTAKTKAGKTPLDLA 144
A+ + P D+A
Sbjct: 208 ANREITDHMDRLPRDVA 224
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 72/173 (41%), Gaps = 37/173 (21%)
Query: 6 EELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVG 65
E++H AAR G V+ LI +S +++ T LHLA G + YL A VG
Sbjct: 22 EKIHVAARKGQTDEVRR-LIETGVSPTIQNRFGCTALHLACKFGCVDTAKYL----ASVG 76
Query: 66 A--AAMDDMSAIHFASQKGHLEVVRTLVSS-----------------------GVSIKAC 100
+ IH A ++V LV G +K C
Sbjct: 77 EVHSLWHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHC 136
Query: 101 TRKGLNPLHYAVQ--GSHLELVKYLLRKGASLTAKTKAGKTPLDLA---RNEE 148
KG LH+ V +LE +K L++ GAS TAK KA +TPL A RN E
Sbjct: 137 --KGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNRE 187
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 11/159 (6%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA-DVGA 66
L+ A + D++ ++ LI +N ++ S +P A G+TE+++Y+ K+ D+
Sbjct: 43 LNIAVHNNDIEIAKA-LIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNK 101
Query: 67 AAMDDMSAIHFASQKGHLEVVRTLVSSG-VSIKACTRKGLNPLHYAV---QGSHL--ELV 120
+A+ A++KGH++ V+ L+ G I G L AV +G+ L ++V
Sbjct: 102 HNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV 161
Query: 121 KYLLRKGASLTAKTKAGKTPLDLARNE---EIRSFLEEW 156
K L+ GA + K +G+T +D A + EI L ++
Sbjct: 162 KLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 78 ASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAG 137
A+Q+ +V L + + +G PL+ AV + +E+ K L+ +GA + +
Sbjct: 13 ANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSIS 72
Query: 138 KTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKAG 172
+P L + R+ + + P+LN + G
Sbjct: 73 DSPY-LYAGAQGRTEILAYMLKHATPDLNKHNRYG 106
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 73/140 (52%), Gaps = 3/140 (2%)
Query: 7 ELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGA 66
EL +AA GDL+ + S+L +N +VN+++ RT L + G E+ L A+
Sbjct: 8 ELASAAARGDLEQLTSLLQNNV-NVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL 65
Query: 67 AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
+ IH A++ G L+ ++TL+ + + +G PLH A + HL +V++L++
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 127 GAS-LTAKTKAGKTPLDLAR 145
AS + + G T DLAR
Sbjct: 126 TASNVGHRNHKGDTACDLAR 145
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 3/140 (2%)
Query: 7 ELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGA 66
EL +AA GDL+ + S+L +N +VN+++ RT L + G E+ L A+
Sbjct: 8 ELASAAARGDLEQLTSLLQNNV-NVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL 65
Query: 67 AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
+ IH A++ G L+ ++TL+ + +G PLH A + HL +V++L++
Sbjct: 66 KDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 127 GAS-LTAKTKAGKTPLDLAR 145
AS + + G T DLAR
Sbjct: 126 TASNVGHRNHKGDTACDLAR 145
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 3/140 (2%)
Query: 7 ELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGA 66
EL +AA GDL+ + S+L +N +VN+++ RT L + G E+ L A+
Sbjct: 8 ELASAAARGDLEQLTSLLQNNV-NVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL 65
Query: 67 AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
+ IH A++ G L+ ++TL+ + +G PLH A + HL +V++L++
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 127 GAS-LTAKTKAGKTPLDLAR 145
AS + + G T DLAR
Sbjct: 126 TASNVGHRNHKGDTACDLAR 145
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 3/140 (2%)
Query: 7 ELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGA 66
EL +AA GDL+ + S+L +N +VN+++ RT L + G E+ L A+
Sbjct: 8 ELASAAARGDLEQLTSLLQNNV-NVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL 65
Query: 67 AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
+ IH A++ G L+ ++TL+ + +G PLH A + HL +V++L++
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 127 GAS-LTAKTKAGKTPLDLAR 145
AS + + G T DLAR
Sbjct: 126 TASNVGHRNHKGDTACDLAR 145
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 2/144 (1%)
Query: 5 EEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA-D 63
E LH AAR A + +L ++ N +D RTPLH A + V L +N+A D
Sbjct: 58 ETALHLAARYSRSDAAKRLLEASA-DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 116
Query: 64 VGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYL 123
+ A D + + A++ ++ L++S + A G + LH+A ++++ L
Sbjct: 117 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 176
Query: 124 LRKGASLTAKTKAGKTPLDLARNE 147
L+ GA+ + +TPL LA E
Sbjct: 177 LKNGANKDMQNNREETPLFLAARE 200
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 6/141 (4%)
Query: 8 LHAAARSGDLKAVQSILISN-PLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGA 66
LHAA S D + V ILI N +++R TPL LAA ++ L + ADV
Sbjct: 94 LHAAV-SADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN- 151
Query: 67 AAMDDM--SAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLL 124
A+DD+ SA+H+A+ +++ L+ +G + + PL A + E K LL
Sbjct: 152 -AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 210
Query: 125 RKGASLTAKTKAGKTPLDLAR 145
A+ + P D+A+
Sbjct: 211 DHFANRDITDHMDRLPRDIAQ 231
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 60/151 (39%), Gaps = 15/151 (9%)
Query: 29 LSVNSRDKHSRTPLHLAAWSG---------QTEVVSYLCKNKADVGAAAMDDM-----SA 74
+ VN R TPL +A+ SG + E + + GA+ + +A
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60
Query: 75 IHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS-LTAK 133
+H A++ + + L+ + G PLH AV + + L+R A+ L A+
Sbjct: 61 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120
Query: 134 TKAGKTPLDLARNEEIRSFLEEWEQSSKKPN 164
G TPL LA + LE+ S N
Sbjct: 121 MHDGTTPLILAARLAVEGMLEDLINSHADVN 151
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 2/144 (1%)
Query: 5 EEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA-D 63
E LH AAR A + +L ++ N +D RTPLH A + V L +N+A D
Sbjct: 59 ETALHLAARYSRSDAAKRLLEASA-DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 117
Query: 64 VGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYL 123
+ A D + + A++ ++ L++S + A G + LH+A ++++ L
Sbjct: 118 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 177
Query: 124 LRKGASLTAKTKAGKTPLDLARNE 147
L+ GA+ + +TPL LA E
Sbjct: 178 LKNGANKDMQNNREETPLFLAARE 201
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 10/166 (6%)
Query: 8 LHAAARSGDLKAVQSILISN-PLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGA 66
LHAA S D + V ILI N +++R TPL LAA ++ L + ADV
Sbjct: 95 LHAAV-SADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN- 152
Query: 67 AAMDDM--SAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLL 124
A+DD+ SA+H+A+ +++ L+ +G + + PL A + E K LL
Sbjct: 153 -AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 211
Query: 125 RKGASLTAKTKAGKTPLDLAR---NEEIRSFLEEWEQSSKKPNLNG 167
A+ + P D+A+ + +I L+E+ + P L+G
Sbjct: 212 DHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY-NLVRSPQLHG 256
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 60/165 (36%), Gaps = 42/165 (25%)
Query: 2 GNREEELHAAARSGDLKAVQSILISNPLSV-NSRDKHSRTPLHLAAWSGQTEVVSYLCKN 60
GN EEE D AV S I S+ N D+ T LHLAA +++ L +
Sbjct: 28 GNSEEE-------EDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA 80
Query: 61 KADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELV 120
AD A D+M G PLH AV +
Sbjct: 81 SAD--ANIQDNM-------------------------------GRTPLHAAVSADAQGVF 107
Query: 121 KYLLRKGAS-LTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPN 164
+ L+R A+ L A+ G TPL LA + LE+ S N
Sbjct: 108 QILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 152
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 2/144 (1%)
Query: 5 EEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA-D 63
E LH AAR A + +L ++ N +D RTPLH A + V L +N+A D
Sbjct: 26 ETALHLAARYSRSDAAKRLLEASA-DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 84
Query: 64 VGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYL 123
+ A D + + A++ ++ L++S + A G + LH+A ++++ L
Sbjct: 85 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 144
Query: 124 LRKGASLTAKTKAGKTPLDLARNE 147
L+ GA+ + +TPL LA E
Sbjct: 145 LKNGANKDMQNNREETPLFLAARE 168
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 10/166 (6%)
Query: 8 LHAAARSGDLKAVQSILISN-PLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGA 66
LHAA S D + V ILI N +++R TPL LAA ++ L + ADV
Sbjct: 62 LHAAV-SADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN- 119
Query: 67 AAMDDM--SAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLL 124
A+DD+ SA+H+A+ +++ L+ +G + + PL A + E K LL
Sbjct: 120 -AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 178
Query: 125 RKGASLTAKTKAGKTPLDLAR---NEEIRSFLEEWEQSSKKPNLNG 167
A+ + P D+A+ + +I L+E+ + P L+G
Sbjct: 179 DHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY-NLVRSPQLHG 223
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 62/162 (38%), Gaps = 37/162 (22%)
Query: 15 GDLKAVQSILISNPLSV-NSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMS 73
GD AV S I S+ N D+ T LHLAA +++ L + AD A D+M
Sbjct: 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD--ANIQDNM- 57
Query: 74 AIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS-LTA 132
G PLH AV + + L+R A+ L A
Sbjct: 58 ------------------------------GRTPLHAAVSADAQGVFQILIRNRATDLDA 87
Query: 133 KTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKAGES 174
+ G TPL LA + LE+ S ++N + G+S
Sbjct: 88 RMHDGTTPLILAARLAVEGMLEDLINS--HADVNAVDDLGKS 127
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 10/133 (7%)
Query: 31 VNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTL 90
+N ++ +TPLHLA + Q E+ L D + +H A ++G L V L
Sbjct: 38 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 97
Query: 91 VSSGVS------IKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKA-GKTPLDL 143
S + +KA G LH A +L +V+ L+ GA + A+ G+T L L
Sbjct: 98 TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL 157
Query: 144 A---RNEEIRSFL 153
A +N ++ S L
Sbjct: 158 AVDLQNPDLVSLL 170
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 107 PLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLN 166
PLH AV + E+ + LL G + G TPL LA + + + QS P+L+
Sbjct: 48 PLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH 107
Query: 167 GKEKA 171
KA
Sbjct: 108 SILKA 112
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDK-HSRTPLHLAAWSGQTEVVSYLCKNKADV 64
LH A+ G L V+ +L+S VN+++ + RT LHLA ++VS L K ADV
Sbjct: 121 LHLASIHGYLGIVE-LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV 177
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 3/140 (2%)
Query: 7 ELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGA 66
EL +AA GDL+ + S+L +N +VN+++ RT L + G E+ L A+
Sbjct: 8 ELASAAARGDLEQLTSLLQNNV-NVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL 65
Query: 67 AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
+ IH A++ G L+ ++TL+ + +G PLH A + HL +V++L++
Sbjct: 66 KDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 127 GAS-LTAKTKAGKTPLDLAR 145
AS + + G T DLAR
Sbjct: 126 TASNVGHRNHKGDTACDLAR 145
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 71 DMSAIHFASQ---KGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
D +A+H A + + L +V LV + ++ T KG LHY + E +K LLR
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGK 228
Query: 128 ASLTAKTKAGKTPLDLAR 145
AS+ ++G+TPLD+A+
Sbjct: 229 ASIEIANESGETPLDIAK 246
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 40 TPLHLAAWS---GQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVS 96
T LHLA S +V +L +N ++ +A+H+ + E ++ L+ S
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230
Query: 97 IKACTRKGLNPLHYAVQGSH 116
I+ G PL A + H
Sbjct: 231 IEIANESGETPLDIAKRLKH 250
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 10/133 (7%)
Query: 31 VNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTL 90
+N ++ +TPLHLA + Q E+ L D + +H A ++G L V L
Sbjct: 35 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 94
Query: 91 VSSGVS------IKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKA-GKTPLDL 143
S + +KA G LH A +L +V+ L+ GA + A+ G+T L L
Sbjct: 95 TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL 154
Query: 144 A---RNEEIRSFL 153
A +N ++ S L
Sbjct: 155 AVDLQNPDLVSLL 167
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 107 PLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLN 166
PLH AV + E+ + LL G + G TPL LA + + + QS P+L+
Sbjct: 45 PLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH 104
Query: 167 GKEKA 171
KA
Sbjct: 105 SILKA 109
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDK-HSRTPLHLAAWSGQTEVVSYLCKNKADV 64
LH A+ G L V+ +L+S VN+++ + RT LHLA ++VS L K ADV
Sbjct: 118 LHLASIHGYLGIVE-LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV 174
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 18/166 (10%)
Query: 5 EEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADV 64
E L AA+ D++A+ +L V+ R T LH+AA E L + ++
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 65 GAAAM-----DDMSAIHFASQKGHLEVVRTLVSSGVSIKA-------------CTRKGLN 106
M + +A+H A ++ +VR L++ G S+ A G +
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123
Query: 107 PLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSF 152
PL +A E+V+ L+ GA + A+ G T L + + ++F
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTF 169
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 2/144 (1%)
Query: 5 EEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA-D 63
E LH AAR A + +L ++ +D RTPLH A + V L +N+A D
Sbjct: 23 ETALHLAARYSRSDAAKRLLEASA-DAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATD 81
Query: 64 VGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYL 123
+ A D + + A++ ++ L++S + A G + LH+A ++++ L
Sbjct: 82 LDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 141
Query: 124 LRKGASLTAKTKAGKTPLDLARNE 147
L+ GA+ + +TPL LA E
Sbjct: 142 LKNGANKDMQNNKEETPLFLAARE 165
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 9/155 (5%)
Query: 8 LHAAARSGDLKAVQSILISN-PLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGA 66
LHAA S D + V IL+ N +++R TPL LAA ++ L + ADV
Sbjct: 59 LHAAV-SADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVN- 116
Query: 67 AAMDDM--SAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLL 124
A+DD+ SA+H+A+ +++ L+ +G + K PL A + E K LL
Sbjct: 117 -AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLL 175
Query: 125 RKGASLTAKTKAGKTPLDLAR---NEEIRSFLEEW 156
A+ + P D+A+ + +I L+E+
Sbjct: 176 DHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY 210
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 73 SAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS-LT 131
+A+H A++ + + L+ + G PLH AV + + LLR A+ L
Sbjct: 24 TALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLD 83
Query: 132 AKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPN 164
A+ G TPL LA + LE+ S N
Sbjct: 84 ARMHDGTTPLILAARLALEGMLEDLINSHADVN 116
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 86 VVRTLVSSGVSIKACT-RKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPL 141
V+ + G S+ T R G LH A + S + K LL A + G+TPL
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPL 59
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 70/174 (40%), Gaps = 51/174 (29%)
Query: 31 VNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQ---------- 80
VN+ D TPL LA + + +V+YL K AD + SA+H A+
Sbjct: 159 VNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAANRDFGXXVYX 218
Query: 81 ------KGHLEVV-----------------------RTLVSSG--VSIKACTRK------ 103
KG +E + + LV G V RK
Sbjct: 219 LNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYK 278
Query: 104 GLNPLHYAVQGSHLELVKYLL-RKGASLTAKTKAGKTPLDLARNE---EIRSFL 153
G LHYA Q S+ +VKYL+ KG++ + + GKTP+ LA E E+ +L
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYL 332
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
LH AA+ + V+ ++ + + +D+ +TP+ LAA G+ EVV YL + A V A
Sbjct: 283 LHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAV 342
Query: 68 AMDDMSAIHFASQKGHLEVV 87
D +A A H +V
Sbjct: 343 DATDHTARQLAQANNHHNIV 362
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 14/152 (9%)
Query: 8 LHAAARSGDLKAVQSILISNPL--SVNSRDKHSRTPLHLAAWS-GQTEVVS--YLCKNKA 62
LH AA + D L S L + D++ T L + A + G+ +V S L + A
Sbjct: 203 LHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGA 262
Query: 63 DV---GAAAMDD-----MSAIHFASQKGHLEVVRTLVSS-GVSIKACTRKGLNPLHYAVQ 113
V GAA D +A+H+A+Q + +V+ LV G + G P+ A Q
Sbjct: 263 KVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQ 322
Query: 114 GSHLELVKYLLRKGASLTAKTKAGKTPLDLAR 145
+E+V YL+++GAS+ A T LA+
Sbjct: 323 EGRIEVVXYLIQQGASVEAVDATDHTARQLAQ 354
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 32 NSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA-DVGAAAMDDMSAIHFASQKGHLEVVRTL 90
N +D RTPLH A + V L +N+A D+ A D + + A++ ++ L
Sbjct: 84 NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 143
Query: 91 VSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNE 147
++S + A G + LH+A ++++ LL+ GA+ + +TPL LA E
Sbjct: 144 INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAARE 200
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 6/141 (4%)
Query: 8 LHAAARSGDLKAVQSILISN-PLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGA 66
LHAA S D + V ILI N +++R TPL LAA ++ L + ADV
Sbjct: 94 LHAAV-SADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN- 151
Query: 67 AAMDDM--SAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLL 124
A+DD+ SA+H+A+ +++ L+ +G + + PL A + E K LL
Sbjct: 152 -AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 210
Query: 125 RKGASLTAKTKAGKTPLDLAR 145
A+ + P D+A+
Sbjct: 211 DHFANRDITDHMDRLPRDIAQ 231
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 58/156 (37%), Gaps = 25/156 (16%)
Query: 29 LSVNSRDKHSRTPLHLAAWSG-------------QTEVVSYLC------KNKADVGAAAM 69
+ VN R TPL +A+ SG V+S N+ D A
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGA-- 58
Query: 70 DDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS 129
+A+H A+ + + L+ + G PLH AV + + L+R A+
Sbjct: 59 ---TALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 115
Query: 130 -LTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPN 164
L A+ G TPL LA + LE+ S N
Sbjct: 116 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 151
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 40 TPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIK- 98
TP AA + +S L +++ DV A + +A+ F + G + VR L +G +
Sbjct: 47 TPWWTAARKADEQALSQLLEDR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 105
Query: 99 ACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLAR 145
R GL LH A E+V+ L+ GA + + + G T L+LAR
Sbjct: 106 RDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR 152
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 1/116 (0%)
Query: 41 PLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSS-GVSIKA 99
PLH AA G + N+ V +A+++A GH ++V L + + +
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 100 CTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEE 155
+ G LH A + ++V+ LL KGA + K D A N S L++
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATNAACASLLKK 191
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYL 57
L+ A G V+ + + +N ++K T LH AAW G ++V L
Sbjct: 110 LYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLL 159
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 40 TPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIK- 98
TP AA + +S L +++ DV A + +A+ F + G + VR L +G +
Sbjct: 46 TPWWTAARKADEQALSQLLEDR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 104
Query: 99 ACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLAR 145
R GL LH A E+V+ L+ GA + + + G T L+LAR
Sbjct: 105 RDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR 151
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 70 DDMSAIHFASQKGHLEVVRTLVSSGVSI-KACTRKGLNPLHYAVQGSHLELVKYLLRKGA 128
D + +H A E+VR L +G + K G PLH AV+ +++ LL+ GA
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 129 SLTAKTKAGKTPL 141
TA+ G+TPL
Sbjct: 217 DPTARMYGGRTPL 229
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 95 VSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLT-AKTKAGKTPLDLARNEEIRSFL 153
+ ++A G PLH AV E+V+ L GA L + G+TPL LA + S L
Sbjct: 149 LQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVL 208
Query: 154 EEWEQSSKKPN 164
E ++ P
Sbjct: 209 ELLLKAGADPT 219
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 70 DDMSAIHFASQKGHLEVVRTLVSSGVSI-KACTRKGLNPLHYAVQGSHLELVKYLLRKGA 128
D + +H A E+VR L +G + K G PLH AV+ +++ LL+ GA
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 129 SLTAKTKAGKTPL 141
TA+ G+TPL
Sbjct: 217 DPTARMYGGRTPL 229
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 95 VSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLT-AKTKAGKTPLDLARNEEIRSFL 153
+ ++A G PLH AV E+V+ L GA L + G+TPL LA + S L
Sbjct: 149 LQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVL 208
Query: 154 EEWEQSSKKPN 164
E ++ P
Sbjct: 209 ELLLKAGADPT 219
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 44/90 (48%)
Query: 45 AAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKG 104
AA +G+ EVV K D + ++A+H A + +V L+++G ++ + G
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 105 LNPLHYAVQGSHLELVKYLLRKGASLTAKT 134
PLH A + + L++ GA++ A T
Sbjct: 88 WTPLHCAASCNDTVICMALVQHGAAIFATT 117
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 12 ARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDD 71
A G ++ LI+ +VNS D H TPLH AA T + L ++ A + A + D
Sbjct: 61 AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSD 120
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 70 DDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS 129
D+ + + A+ L L+ +G ++ G PLH+A H L L++GA
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 130 LTAKTKAGKTPLDLAR---NEEIRSFL 153
L A+ G+ PL +A N +I + L
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLL 320
Score = 33.9 bits (76), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%)
Query: 23 ILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG 82
L+ N +VN D R PLH A G T + K AD+GA + + A +
Sbjct: 253 FLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETA 312
Query: 83 HLEVVRTL 90
+ ++V L
Sbjct: 313 NADIVTLL 320
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 40 TPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKA 99
TPL A + +L +N A+V A +H A+ GH + + G + A
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 100 CTRKGLNPLHYAVQGSHLELVKYL----LRKGASLTAKTKAG-KTPLDLARN 146
+G +PL A++ ++ ++V L +R+ + A+ +AG +T LD+ R+
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLLRLAKMREAEA--AQGQAGDETYLDIFRD 346
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 70 DDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS 129
D+ + + A+ L L+ +G ++ G PLH+A H L L++GA
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 130 LTAKTKAGKTPLDLAR---NEEIRSFL 153
L A+ G+ PL +A N +I + L
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLL 320
Score = 33.9 bits (76), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%)
Query: 23 ILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG 82
L+ N +VN D R PLH A G T + K AD+GA + + A +
Sbjct: 253 FLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETA 312
Query: 83 HLEVVRTL 90
+ ++V L
Sbjct: 313 NADIVTLL 320
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 40 TPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKA 99
TPL A + +L +N A+V A +H A+ GH + + G + A
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 100 CTRKGLNPLHYAVQGSHLELVKYL----LRKGASLTAKTKAG-KTPLDLARN 146
+G +PL A++ ++ ++V L +R+ + A+ +AG +T LD+ R+
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLLRLAKMREAEA--AQGQAGDETYLDIFRD 346
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 70 DDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS 129
D+ + + A+ L L+ +G ++ G PLH+A H L L++GA
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 130 LTAKTKAGKTPLDLAR---NEEIRSFL 153
L A+ G+ PL +A N +I + L
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLL 320
Score = 33.5 bits (75), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%)
Query: 23 ILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG 82
L+ N +VN D R PLH A G T + K AD+GA + + A +
Sbjct: 253 FLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETA 312
Query: 83 HLEVVRTL 90
+ ++V L
Sbjct: 313 NADIVTLL 320
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 40 TPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKA 99
TPL A + +L +N A+V A +H A+ GH + + G + A
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 100 CTRKGLNPLHYAVQGSHLELVKYL----LRKGASLTAKTKAG-KTPLDLARN 146
+G +PL A++ ++ ++V L +R+ + A+ +AG +T LD+ R+
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLLRLAKMREAEA--AQGQAGDETYLDIFRD 346
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 19 AVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFA 78
AV L+ S N +D +P+H AA +G + + L ++ ADV A IH A
Sbjct: 57 AVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLA 116
Query: 79 SQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQ 113
++GH VV L + GL PL A Q
Sbjct: 117 IREGHSSVVSFLAPES-DLHHRDASGLTPLELARQ 150
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 19 AVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFA 78
AV L+ S N +D +P+H AA +G + + L ++ ADV A IH A
Sbjct: 55 AVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLA 114
Query: 79 SQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQ 113
++GH VV L + GL PL A Q
Sbjct: 115 IREGHSSVVSFLAPES-DLHHRDASGLTPLELARQ 148
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 74 AIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAK 133
A+ A+Q L +V ++ +G + A G LHYA + + +K LL+ A +
Sbjct: 178 AVKVANQ-ASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTV 236
Query: 134 TKAGKTPLDLARNEEIRSFLEEWEQS 159
+AG+T LD+AR + + E EQ+
Sbjct: 237 NEAGETALDIARKKHHKECEELLEQA 262
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 74 AIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAK 133
A+ A+Q L +V ++ +G + A G LHYA + + +K LL+ A +
Sbjct: 197 AVKVANQAS-LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTV 255
Query: 134 TKAGKTPLDLARNEEIRSFLEEWEQS 159
+AG+T LD+AR + + E EQ+
Sbjct: 256 NEAGETALDIARKKHHKECEELLEQA 281
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
Query: 40 TPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDM--SAIHFASQKGHLEVVRTLVSSGVSI 97
TPL LAA ++ L + ADV A+DD+ SA+H+A+ +++ L+ +G +
Sbjct: 17 TPLILAARLALEGMLEDLINSHADVN--AVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 74
Query: 98 KACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLAR---NEEIRSFLE 154
K PL A + E K LL A+ + P D+A+ + +I L+
Sbjct: 75 DMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 134
Query: 155 E 155
E
Sbjct: 135 E 135
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 22/106 (20%)
Query: 39 RTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIK 98
+T LH+A +V+ L +N ADV AAA D F KG G
Sbjct: 102 QTALHIAIERRNXTLVTLLVENGADVQAAANGDF----FKKTKGR---------PGFYF- 147
Query: 99 ACTRKGLNPLHYAVQGSHLELVKYLLR---KGASLTAKTKAGKTPL 141
G PL A + L +VK+LL+ + A ++A+ G T L
Sbjct: 148 -----GELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVL 188
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 19/105 (18%)
Query: 41 PLHLAAWSGQTEVVSYLCKNK---ADVGAAAMDDMSAIH---------------FASQKG 82
PL LAA + Q +V +L +N AD+ A + +H S
Sbjct: 151 PLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSXYN 210
Query: 83 HLEVVRTLVSSGVSIKACT-RKGLNPLHYAVQGSHLELVKYLLRK 126
+ ++ + + ++ T RKGL PL A + ++ Y+L++
Sbjct: 211 EILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR 255
>pdb|3EDN|A Chain A, Crystal Structure Of The Bacillus Anthracis Phenazine
Biosynthesis Protein, Phzf Family
pdb|3EDN|B Chain B, Crystal Structure Of The Bacillus Anthracis Phenazine
Biosynthesis Protein, Phzf Family
Length = 299
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 123 LLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNG 167
LL + ASLT +TKAG P+ + NE +F++ + + + + G
Sbjct: 89 LLEEKASLTIETKAGILPIQIGVNENGETFIKXRQTAPQFKDFAG 133
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 39 RTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVS-SGVSI 97
+T L LA G+ +VV L +ADV D +A+ A + GH E+ L++ I
Sbjct: 184 QTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDI 243
Query: 98 KACTRKGLNPLHYAVQGSHLELVKYLLRK 126
R G L A+ E+ L +
Sbjct: 244 SLTDRDGSTALMVALDAGQSEIASMLYSR 272
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 73 SAIHFASQKGHLEVVRTLVSSGVS-IKACTRKGLNPLHYAVQGS-----HLELVKYLLRK 126
+A+H++ + VV+ L+ SGV + R G +P+ + +E V L R
Sbjct: 113 TALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRL 172
Query: 127 GASLTAKTKAGKTPLDLA 144
G ++AG+T L LA
Sbjct: 173 GNINAKASQAGQTALMLA 190
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 75 IHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKT 134
+H A+ ++V+ L+ SG+ KG L+YAV + + VK ++K L
Sbjct: 66 LHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFYG 125
Query: 135 KAG 137
K G
Sbjct: 126 KTG 128
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 42/112 (37%), Gaps = 2/112 (1%)
Query: 42 LHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACT 101
L AA GQ E V L + AD A I G +V L+ G
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQV-MMMGSAQVAELLLLHGAEPNCAD 74
Query: 102 RKGLN-PLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSF 152
L P+H A + L+ + L R GA L G+ P+DLA + R
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDI 126
>pdb|3EMC|A Chain A, Crystal Structure Of Xynb, An Intracellular Xylanase From
Paenibacillus Barcinonensis
pdb|3EMQ|A Chain A, Crystal Structure Of Xilanase Xynb From Paenibacillus
Barcelonensis Complexed With An Inhibitor
pdb|3EMZ|A Chain A, Crystal Structure Of Xylanase Xynb From Paenibacillus
Barcinonensis Complexed With A Conduramine Derivative
Length = 331
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 86 VVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLAR 145
+VR+L+ G + +G H+ + G ++ ++ + + ASL + + L + R
Sbjct: 192 LVRSLLDQGAPVHGIGMQG----HWNIHGPSMDEIRQAIERYASLDVQLHVTELDLSVFR 247
Query: 146 NEEIRSFLEE 155
+E+ R+ L E
Sbjct: 248 HEDQRTDLTE 257
>pdb|3BIP|A Chain A, Crystal Structure Of Yeast Spt16 N-Terminal Domain
pdb|3BIP|B Chain B, Crystal Structure Of Yeast Spt16 N-Terminal Domain
pdb|3BIQ|A Chain A, Crystal Structure Of Yeast Spt16 N-Terminal Domain
Length = 467
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 131 TAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGK 168
+AK K + +DL ++ E + LE W++++K+P LN K
Sbjct: 80 SAKAKHLQKAIDLFKDPESKITLELWQRNNKEPELNKK 117
>pdb|3BIT|A Chain A, Crystal Structure Of Yeast Spt16 N-Terminal Domain
pdb|3BIT|B Chain B, Crystal Structure Of Yeast Spt16 N-Terminal Domain
Length = 453
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 131 TAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGK 168
+AK K + +DL ++ E + LE W++++K+P LN K
Sbjct: 80 SAKAKHLQKAIDLFKDPESKITLELWQRNNKEPELNKK 117
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 107 PLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
P+H A + L+ + L R GA L + G+ P+DLA
Sbjct: 81 PVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLA 118
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 107 PLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
P+H A + L+ + L R GA L + G+ P+DLA
Sbjct: 81 PVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLA 118
>pdb|1JKU|A Chain A, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum
pdb|1JKU|B Chain B, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum
pdb|1JKU|C Chain C, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum
pdb|1JKU|D Chain D, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum
pdb|1JKU|E Chain E, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum
pdb|1JKU|F Chain F, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum
pdb|1JKV|A Chain A, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum Comlexed With Azide
pdb|1JKV|B Chain B, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum Comlexed With Azide
pdb|1JKV|C Chain C, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum Comlexed With Azide
pdb|1JKV|D Chain D, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum Comlexed With Azide
pdb|1JKV|E Chain E, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum Comlexed With Azide
pdb|1JKV|F Chain F, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum Comlexed With Azide
Length = 266
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 17/83 (20%)
Query: 47 WSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIK-------- 98
W T ++SYL + A GA D+ + H+E++ T++ G ++
Sbjct: 33 WGETTGMMSYLSQGWASTGAEKYKDLLLDTGTEEMAHVEMISTMI--GYLLEDAPFGPED 90
Query: 99 -------ACTRKGLNPLHYAVQG 114
A T G++P H V G
Sbjct: 91 LKRDPSLATTMAGMDPEHSLVHG 113
>pdb|1AVO|B Chain B, Proteasome Activator Reg(Alpha)
pdb|1AVO|D Chain D, Proteasome Activator Reg(Alpha)
pdb|1AVO|F Chain F, Proteasome Activator Reg(Alpha)
pdb|1AVO|H Chain H, Proteasome Activator Reg(Alpha)
pdb|1AVO|J Chain J, Proteasome Activator Reg(Alpha)
pdb|1AVO|L Chain L, Proteasome Activator Reg(Alpha)
pdb|1AVO|N Chain N, Proteasome Activator Reg(Alpha)
Length = 140
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 92 SSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTP 140
+ GV+++ + + LH ++G H ++ KY +G A TKA K P
Sbjct: 45 NFGVAVQEKVFELMTSLHTKLEGFHTQISKYFSERG---DAVTKAAKQP 90
>pdb|3T8K|A Chain A, The Crystal Structure Of A Functionally Unknown Protein
Lebu_0176 From Leptotrichia Buccalis C-1013-B
pdb|3T8K|B Chain B, The Crystal Structure Of A Functionally Unknown Protein
Lebu_0176 From Leptotrichia Buccalis C-1013-B
Length = 186
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 90 LVSSGVSIKACTRKGLNPLHYAVQGS------HLELVKYLLRKGASLTAKTKAGK 138
L++ G IK+ T++G QG EL K L KGA +TA K K
Sbjct: 61 LINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYK 115
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 104 GLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPL 141
G PLH+ ++LELVK+L++ G++ G++ L
Sbjct: 131 GNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCL 168
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 63/154 (40%), Gaps = 33/154 (21%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSR------DKHSRT-------PLHLAAWSGQTEVV 54
LH A L+ V+ +L+ N V+ R KH T PL LAA + Q +VV
Sbjct: 107 LHIAIEKRSLQCVK-LLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVV 165
Query: 55 SYLCKNKADVGAA-AMDDM------------------SAIHFASQKGHLEVVRTLVSSGV 95
+YL +N + A D + SA+ G L++ L +
Sbjct: 166 TYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQ 225
Query: 96 SIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS 129
+ +GL PL A + +E+ +++L++ S
Sbjct: 226 LEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS 259
>pdb|2EVX|A Chain A, Crystal Structure Of Pumpkin Seed Globulin
pdb|2E9Q|A Chain A, Recombinant Pro-11s Globulin Of Pumpkin
Length = 459
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 144 ARNEEIRSFLEEWEQSSKKPNLNGKEKAGESETKLGDSGVEVSASSPDGKRDENLKRKGD 203
R E++ +EEWE+SS+K + EK+G + D +E A DG LK + D
Sbjct: 181 GRPEQVERGVEEWERSSRKG--SSGEKSGNIFSGFADEFLE-EAFQIDGGLVRKLKGEDD 237
Query: 204 EDD 206
E D
Sbjct: 238 ERD 240
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 63/154 (40%), Gaps = 33/154 (21%)
Query: 8 LHAAARSGDLKAVQSILISNPLSVNSR------DKHSRT-------PLHLAAWSGQTEVV 54
LH A L+ V+ +L+ N V+ R KH T PL LAA + Q +VV
Sbjct: 94 LHIAIEKRSLQCVK-LLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVV 152
Query: 55 SYLCKNKADVGAA-AMDDM------------------SAIHFASQKGHLEVVRTLVSSGV 95
+YL +N + A D + SA+ G L++ L +
Sbjct: 153 TYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQ 212
Query: 96 SIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS 129
+ +GL PL A + +E+ +++L++ S
Sbjct: 213 LEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS 246
>pdb|1O9I|A Chain A, Crystal Structure Of The Y42f Mutant Of Manganese Catalase
From Lactobacillus Plantarum At 1.33a Resolution
pdb|1O9I|B Chain B, Crystal Structure Of The Y42f Mutant Of Manganese Catalase
From Lactobacillus Plantarum At 1.33a Resolution
pdb|1O9I|C Chain C, Crystal Structure Of The Y42f Mutant Of Manganese Catalase
From Lactobacillus Plantarum At 1.33a Resolution
pdb|1O9I|D Chain D, Crystal Structure Of The Y42f Mutant Of Manganese Catalase
From Lactobacillus Plantarum At 1.33a Resolution
pdb|1O9I|E Chain E, Crystal Structure Of The Y42f Mutant Of Manganese Catalase
From Lactobacillus Plantarum At 1.33a Resolution
pdb|1O9I|F Chain F, Crystal Structure Of The Y42f Mutant Of Manganese Catalase
From Lactobacillus Plantarum At 1.33a Resolution
Length = 266
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 47 WSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIK-------- 98
W T ++S+L + A GA D+ + H+E++ T++ +
Sbjct: 33 WGETTGMMSFLSQGWASTGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLK 92
Query: 99 -----ACTRKGLNPLHYAVQG 114
A T G++P H V G
Sbjct: 93 RDPSLATTMAGMDPEHSLVHG 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.126 0.347
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,152,096
Number of Sequences: 62578
Number of extensions: 231155
Number of successful extensions: 983
Number of sequences better than 100.0: 134
Number of HSP's better than 100.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 366
Number of HSP's gapped (non-prelim): 346
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 50 (23.9 bits)