Query 041574
Match_columns 292
No_of_seqs 251 out of 1305
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 08:33:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041574.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041574hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03547 Mem_trans: Membrane t 100.0 1.9E-28 4.2E-33 234.2 16.8 225 10-241 2-229 (385)
2 COG0679 Predicted permeases [G 99.8 3.9E-20 8.5E-25 174.9 16.1 151 7-158 2-154 (311)
3 TIGR00946 2a69 he Auxin Efflux 99.8 9.5E-20 2.1E-24 171.9 12.9 146 1-152 1-155 (321)
4 PRK09903 putative transporter 99.8 6.2E-19 1.3E-23 166.4 15.3 142 9-153 4-152 (314)
5 KOG2722 Predicted membrane pro 98.7 6.5E-08 1.4E-12 93.5 8.2 111 13-124 16-131 (408)
6 TIGR00841 bass bile acid trans 97.2 0.011 2.3E-07 55.7 13.8 137 6-147 132-272 (286)
7 PF13593 DUF4137: SBF-like CPA 94.5 1.2 2.6E-05 42.6 14.2 113 13-127 163-283 (313)
8 COG0798 ACR3 Arsenite efflux p 92.4 3.5 7.6E-05 40.3 13.4 122 10-134 182-312 (342)
9 PF05684 DUF819: Protein of un 92.4 2.6 5.7E-05 41.6 12.8 73 10-83 21-96 (378)
10 TIGR00832 acr3 arsenical-resis 90.4 1.6 3.4E-05 42.1 8.9 52 77-129 254-305 (328)
11 COG0385 Predicted Na+-dependen 87.3 19 0.00042 35.0 13.8 111 10-125 163-278 (319)
12 TIGR00783 ccs citrate carrier 78.9 8.2 0.00018 37.9 7.6 99 17-116 207-315 (347)
13 PRK04972 putative transporter; 73.9 54 0.0012 34.0 12.4 37 83-120 104-140 (558)
14 TIGR00807 malonate_madL malona 70.0 35 0.00076 28.7 8.1 82 14-97 37-120 (125)
15 COG3329 Predicted permease [Ge 68.5 82 0.0018 30.9 11.3 113 12-129 14-130 (372)
16 PF03817 MadL: Malonate transp 63.1 58 0.0013 27.5 8.1 80 14-95 37-118 (125)
17 COG5505 Predicted integral mem 62.0 1.7E+02 0.0036 28.9 12.8 134 14-153 31-174 (384)
18 PF05982 DUF897: Domain of unk 55.3 1.2E+02 0.0026 29.7 10.0 134 16-153 1-140 (327)
19 TIGR03802 Asp_Ala_antiprt aspa 55.1 1.1E+02 0.0025 31.7 10.6 107 11-119 9-137 (562)
20 PF03390 2HCT: 2-hydroxycarbox 53.8 1.1E+02 0.0024 30.9 9.8 80 18-98 63-150 (414)
21 COG2991 Uncharacterized protei 51.6 15 0.00034 28.2 2.7 36 7-45 4-39 (77)
22 PLN03159 cation/H(+) antiporte 49.8 1.3E+02 0.0028 32.9 10.4 115 36-152 313-437 (832)
23 TIGR00383 corA magnesium Mg(2+ 49.5 2.2E+02 0.0048 26.5 10.9 29 38-67 257-285 (318)
24 PF03390 2HCT: 2-hydroxycarbox 45.2 1.2E+02 0.0027 30.6 8.6 82 16-97 272-361 (414)
25 PF11712 Vma12: Endoplasmic re 44.5 1.5E+02 0.0034 24.8 8.1 24 6-29 78-101 (142)
26 PRK09528 lacY galactoside perm 39.0 3.5E+02 0.0075 25.7 12.2 19 148-166 400-418 (420)
27 TIGR00659 conserved hypothetic 39.0 3.2E+02 0.007 25.3 11.6 113 35-153 50-167 (226)
28 COG0598 CorA Mg2+ and Co2+ tra 38.9 2.6E+02 0.0056 26.6 9.6 61 5-71 233-296 (322)
29 PF03616 Glt_symporter: Sodium 36.4 2E+02 0.0043 28.3 8.5 53 46-98 280-336 (368)
30 PRK09546 zntB zinc transporter 35.8 81 0.0018 29.9 5.6 24 44-67 268-291 (324)
31 PF04172 LrgB: LrgB-like famil 35.1 3.6E+02 0.0077 24.7 11.2 116 34-154 39-158 (215)
32 PF07889 DUF1664: Protein of u 33.9 42 0.00092 28.3 3.0 21 13-33 8-28 (126)
33 COG1346 LrgB Putative effector 32.3 4.2E+02 0.0091 24.7 11.6 106 43-154 61-171 (230)
34 PF11120 DUF2636: Protein of u 31.6 80 0.0017 23.6 3.8 27 3-31 2-28 (62)
35 PF01544 CorA: CorA-like Mg2+ 30.0 43 0.00094 30.3 2.6 29 38-67 233-261 (292)
36 PRK12460 2-keto-3-deoxyglucona 28.8 3.4E+02 0.0073 26.5 8.5 49 50-98 197-248 (312)
37 PRK04288 antiholin-like protei 28.2 4.9E+02 0.011 24.2 11.9 111 37-153 58-173 (232)
38 PF09323 DUF1980: Domain of un 27.3 2.8E+02 0.006 24.2 7.2 51 44-94 3-55 (182)
39 PF06826 Asp-Al_Ex: Predicted 27.0 4.3E+02 0.0093 23.1 11.8 117 15-138 28-156 (169)
40 PF11014 DUF2852: Protein of u 26.8 95 0.002 25.9 3.8 29 125-153 4-32 (115)
41 PRK10711 hypothetical protein; 26.4 5.3E+02 0.011 24.0 11.2 107 42-154 58-169 (231)
42 PF03812 KdgT: 2-keto-3-deoxyg 26.1 2.5E+02 0.0054 27.4 7.1 108 7-127 168-279 (314)
43 PRK11085 magnesium/nickel/coba 25.4 2E+02 0.0043 27.8 6.4 23 45-67 261-283 (316)
44 PF03956 DUF340: Membrane prot 25.3 4.9E+02 0.011 23.2 9.5 82 69-153 56-137 (191)
45 PF03601 Cons_hypoth698: Conse 25.0 4.8E+02 0.01 25.0 8.9 133 14-152 26-170 (305)
46 PF10215 Ost4: Oligosaccaryltr 24.9 1.4E+02 0.003 19.8 3.6 25 1-25 1-25 (35)
47 PF12971 NAGLU_N: Alpha-N-acet 24.7 55 0.0012 25.3 2.0 44 154-204 3-46 (86)
48 TIGR00783 ccs citrate carrier 23.5 7.2E+02 0.016 24.5 9.9 102 31-132 6-119 (347)
49 PRK11281 hypothetical protein; 22.3 6.9E+02 0.015 28.6 10.5 22 44-65 624-645 (1113)
50 TIGR00840 b_cpa1 sodium/hydrog 21.5 4.1E+02 0.0089 27.7 8.2 30 43-72 65-96 (559)
51 PRK05326 potassium/proton anti 21.2 9E+02 0.02 24.8 13.8 48 17-65 247-294 (562)
52 KOG1650 Predicted K+/H+-antipo 21.1 3E+02 0.0065 29.9 7.3 114 37-152 302-422 (769)
53 TIGR03802 Asp_Ala_antiprt aspa 20.9 9.5E+02 0.021 24.9 10.9 117 14-139 419-548 (562)
No 1
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.96 E-value=1.9e-28 Score=234.22 Aligned_cols=225 Identities=29% Similarity=0.432 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhhcCCCChhhHhHHHHHHHHHHHHHHHHHHhhcCCCCC-c-hhHHHHHH-HHHHHHHHHHH
Q 041574 10 VMCAMVPLYFAMLIAYGSVKWWRIFTPQQCSGINRFVAVFAVPVLSFHFIAQNNPYQ-M-DTKFILAD-TLSKVLVLVLL 86 (292)
Q Consensus 10 vl~~IlPlfllIlLGyll~R~~~il~~~~~~~LnklV~~vaLPaLIF~sl~~~~~~~-l-~~~~ila~-~l~~li~~ll~ 86 (292)
++++++|+++++++||+++| +|++++++.+.++++|+|+++|||+|.++++....+ . ++.++... .+..++.+++.
T Consensus 2 v~~~i~~i~~ii~~G~~~~~-~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (385)
T PF03547_consen 2 VFSAILPIFLIILLGYLLGR-FGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLLG 80 (385)
T ss_pred cHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999 899999999999999999999999999999865433 2 33333222 23334444556
Q ss_pred HHHHHHHhCCcchhhheeeeeeccchhhhHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhccCCC
Q 041574 87 SVWAIFFKGGLDWLITLFSVATLPNTLVMGIPLLSAMYGEFTQSLMVQLVVLQCIIWYTLLLFLFEYRAATVLIQTQFPG 166 (292)
Q Consensus 87 ~L~~rl~k~~~~~~~~l~~ls~f~NtgfmGiPLv~alfGe~gl~l~v~ivv~q~ii~~tl~l~lle~~~ak~~i~~~~~~ 166 (292)
+++.|++|.+.++.......++|+|++++|+|++.++||++++.++..+.+.+++++|+++..+++.++++....++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~ 160 (385)
T PF03547_consen 81 FLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQALFGERGVAYAIIFDVVNNIILWSLGYFLLESRSEKEDKSEEEPS 160 (385)
T ss_pred HHHHHhcCCCcccceEEEecccCCcchhhHHHHHHHHhcchhhhhehHHHHhhHHHHHHHHHHhhccccccccccccccc
Confidence 66677777555442333334899999999999999999999999999999999999999999999999998888888886
Q ss_pred ccccceeeeeeCCcccccCCCCcccccccccCCCceEEEEeccCCCCCCccccCcccCCCCCCCCCcceeeeccC
Q 041574 167 PAAASIAKFELDNDVISLDGRDPLKTESETDGNGRIRVRIRRSTSSAPDSALSSSICLTPRASNLSNAEIFSINT 241 (292)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (292)
.+.+..+.+.|+|..+.+++++.++|.|+++|++.|...+++.+++++... .+|+++|.+++|.++.++
T Consensus 161 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 229 (385)
T PF03547_consen 161 -SAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPSQSSASAPSSVS-----TSPSPSNSTGAEQKSSNS 229 (385)
T ss_pred -ccccccccccCCccccCCcccccccccccccCCcccccccccccccchhhc-----cCCcccccchhhhhhhhh
Confidence 788999999999999999999999999999999999988877766554433 579999999998777643
No 2
>COG0679 Predicted permeases [General function prediction only]
Probab=99.84 E-value=3.9e-20 Score=174.92 Aligned_cols=151 Identities=21% Similarity=0.411 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcCCCChhhHhHHHHHHHHHHHHHHHHHHhhcCCCCCc-hhHHHHHHHHHHHHHHHH
Q 041574 7 FYKVMCAMVPLYFAMLIAYGSVKWWRIFTPQQCSGINRFVAVFAVPVLSFHFIAQNNPYQM-DTKFILADTLSKVLVLVL 85 (292)
Q Consensus 7 m~~vl~~IlPlfllIlLGyll~R~~~il~~~~~~~LnklV~~vaLPaLIF~sl~~~~~~~l-~~~~ila~~l~~li~~ll 85 (292)
|..++..++|+|++|++||+++| ++.++++.++.+|++|+|+++|||+|+++.+++.+.. +...+.+..++.++.++.
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~r-~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLKR-FGILDEEAARGLSRLVVYVALPALLFNSIATADLSGLADLGLIVASLVATLLAFFL 80 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-hcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999 9999999999999999999999999999999998877 677777766666666666
Q ss_pred HHHHHH-HHhCCcchhhheeeeeeccchhhhHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 041574 86 LSVWAI-FFKGGLDWLITLFSVATLPNTLVMGIPLLSAMYGEFTQSLMVQLVVLQCIIWYTLLLFLFEYRAATV 158 (292)
Q Consensus 86 ~~L~~r-l~k~~~~~~~~l~~ls~f~NtgfmGiPLv~alfGe~gl~l~v~ivv~q~ii~~tl~l~lle~~~ak~ 158 (292)
.+++.+ +++++.++....+..+.|+|++|+|+|++..+|||+++.+++.+...+.+..++++.+.++..+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~~G~~gl~~~~i~~~~~~~~~~~~g~~~l~~~~~~~ 154 (311)
T COG0679 81 LALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVALSLFGEKGLAYAVIFLIIGLFLMFTLGVILLARSGGGT 154 (311)
T ss_pred HHHHHHHHhccchhhHHHHHHHHHhcccchhhHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 666554 4555555433333349999999999999999999999999999999998888899988887655433
No 3
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.82 E-value=9.5e-20 Score=171.92 Aligned_cols=146 Identities=28% Similarity=0.390 Sum_probs=111.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHh-HhhcCCCChhhHhHHHHHHHHHHHHHHHHHHhhcCCCC--Cc-hhHHHHHHH
Q 041574 1 MITGNDFYKVMCAMVPLYFAMLIAYGS-VKWWRIFTPQQCSGINRFVAVFAVPVLSFHFIAQNNPY--QM-DTKFILADT 76 (292)
Q Consensus 1 mi~~~dm~~vl~~IlPlfllIlLGyll-~R~~~il~~~~~~~LnklV~~vaLPaLIF~sl~~~~~~--~l-~~~~ila~~ 76 (292)
||.+ .++++++|+|+++++||++ +| +|++++++.+.+|++++|+++||++|+++.+.+.+ .. ...++....
T Consensus 1 ~~~~----~~~~~ilpv~~ii~lG~~~~~r-~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~ 75 (321)
T TIGR00946 1 MITY----VILETVLPILVVILLGYILGKR-FGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLW 75 (321)
T ss_pred CccH----HHHHHHHHHHHHHHHHHHHHHH-hCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555 4567899999999999999 78 99999999999999999999999999999987664 22 344444444
Q ss_pred HHHHHHHHHHHHHHH-HHhCCcchhhheee-eeeccchhhhHHHHHHHhcCcch---hHHHHHHHHHHHHHHHHHHHHHH
Q 041574 77 LSKVLVLVLLSVWAI-FFKGGLDWLITLFS-VATLPNTLVMGIPLLSAMYGEFT---QSLMVQLVVLQCIIWYTLLLFLF 151 (292)
Q Consensus 77 l~~li~~ll~~L~~r-l~k~~~~~~~~l~~-ls~f~NtgfmGiPLv~alfGe~g---l~l~v~ivv~q~ii~~tl~l~ll 151 (292)
+..++.+++.++..| ++|++.++ ...+. .++++|++|+|+|++.++||+++ +.+++.+.+.+.+..++++.++.
T Consensus 76 ~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~N~~~~GlPl~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (321)
T TIGR00946 76 GAFSGSYALIWLITKPLFKADYGK-LSGFLLVSALPNTAFIGYPLLLSLFGEEGAKILIAALFIDTGAVLMTIALGLFLV 154 (321)
T ss_pred HHHHHHHHHHHHHHHHHHhcccch-hhHHHHHhhhccceeehHHHHHHHhcccchhhhHHHHHHHhccchhHHHHHHHHh
Confidence 444555666677666 66655433 23333 38999999999999999999999 55555666677777788887765
Q ss_pred H
Q 041574 152 E 152 (292)
Q Consensus 152 e 152 (292)
.
T Consensus 155 ~ 155 (321)
T TIGR00946 155 S 155 (321)
T ss_pred c
Confidence 4
No 4
>PRK09903 putative transporter YfdV; Provisional
Probab=99.80 E-value=6.2e-19 Score=166.38 Aligned_cols=142 Identities=21% Similarity=0.338 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhcCCCChhhHhHHHHHHHHHHHHHHHHHHhhcCCCCCc--hhHHHHHHHHHHHHHHHHH
Q 041574 9 KVMCAMVPLYFAMLIAYGSVKWWRIFTPQQCSGINRFVAVFAVPVLSFHFIAQNNPYQM--DTKFILADTLSKVLVLVLL 86 (292)
Q Consensus 9 ~vl~~IlPlfllIlLGyll~R~~~il~~~~~~~LnklV~~vaLPaLIF~sl~~~~~~~l--~~~~ila~~l~~li~~ll~ 86 (292)
.++++++|+|++|++||+++| +|+++++..+.+||+++|+++||++|+++++.+.+.. ++.+.+...+..++.+++.
T Consensus 4 ~~~~~ilpif~ii~lG~~~~r-~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (314)
T PRK09903 4 FFIGDLLPIIVIMLLGYFSGR-RETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFADTRLTLVSLVVIVGCFFFS 82 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 567889999999999999999 9999999999999999999999999999998765433 3444444444445555555
Q ss_pred HHHHH-HHhCCcchhhheee-eeeccchhhhHHHHHHHhcCcch---hHHHHHHHHHHHHHHHHHHHHHHHh
Q 041574 87 SVWAI-FFKGGLDWLITLFS-VATLPNTLVMGIPLLSAMYGEFT---QSLMVQLVVLQCIIWYTLLLFLFEY 153 (292)
Q Consensus 87 ~L~~r-l~k~~~~~~~~l~~-ls~f~NtgfmGiPLv~alfGe~g---l~l~v~ivv~q~ii~~tl~l~lle~ 153 (292)
++..+ ++|++.+. ..... .++++|+||+|+|+++++||+++ +.+++ +...++++.+++++++++.
T Consensus 83 ~~~~~~~~~~~~~~-~~~~~~~~~~~N~gf~G~Pl~~~~~G~~~~~~~~~a~-~~~~~~~~~~~~g~~~~~~ 152 (314)
T PRK09903 83 WFGCYKFFKRTHAE-AAVCALIAGSPTIGFLGFAVLDPIYGDSVSTGLVVAI-ISIIVNAITIPIGLYLLNP 152 (314)
T ss_pred HHHHHHHhcCCcch-hhHhhhhhcCCCcccccHHHHHHHcCchhhhhhHHHH-HHHHHHHHHHHHHHHHHcc
Confidence 55543 44544322 12223 37889999999999999999994 43333 3445677778888888864
No 5
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=98.66 E-value=6.5e-08 Score=93.53 Aligned_cols=111 Identities=13% Similarity=0.122 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHhHhhc--CCCChhhHhHHHHHHHHHHHHHHHHHHhhcCC-CCCc-hhHHHHH-HHHHHHHHHHHHH
Q 041574 13 AMVPLYFAMLIAYGSVKWW--RIFTPQQCSGINRFVAVFAVPVLSFHFIAQNN-PYQM-DTKFILA-DTLSKVLVLVLLS 87 (292)
Q Consensus 13 ~IlPlfllIlLGyll~R~~--~il~~~~~~~LnklV~~vaLPaLIF~sl~~~~-~~~l-~~~~ila-~~l~~li~~ll~~ 87 (292)
.++-++++-.+||++.+ . ++++++..|.+|++|+++..|||+|..+++.- .+.+ +|.++-. ..+..++..+++|
T Consensus 16 pvlqvl~i~~~G~~lA~-~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVnv~Lt~~ig~liG~ 94 (408)
T KOG2722|consen 16 PVLQVLLITLVGFLLAS-DYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVNVGLTFIIGSLIGW 94 (408)
T ss_pred cHHHHHHHHHHHHHHhc-cccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 46678889999999976 5 99999999999999999999999999998653 4444 7777743 3456677777889
Q ss_pred HHHHHHhCCcchhhheeeeeeccchhhhHHHHHHHhc
Q 041574 88 VWAIFFKGGLDWLITLFSVATLPNTLVMGIPLLSAMY 124 (292)
Q Consensus 88 L~~rl~k~~~~~~~~l~~ls~f~NtgfmGiPLv~alf 124 (292)
++.+++|.+++......+++.++|.|.+-+-++.++-
T Consensus 95 lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~alc 131 (408)
T KOG2722|consen 95 LVVKILRPPPQLRGFIIACCAFGNSGNLPLILVPALC 131 (408)
T ss_pred HHhheecCChhhcCeEEEEeecCCcCCcHHHHhHHHh
Confidence 9999888555432445556999999999999999984
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=97.16 E-value=0.011 Score=55.71 Aligned_cols=137 Identities=9% Similarity=-0.007 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhcCCCChhh--HhHHHHHHHHHHHHHHHHHHhhcCC--CCCchhHHHHHHHHHHHH
Q 041574 6 DFYKVMCAMVPLYFAMLIAYGSVKWWRIFTPQQ--CSGINRFVAVFAVPVLSFHFIAQNN--PYQMDTKFILADTLSKVL 81 (292)
Q Consensus 6 dm~~vl~~IlPlfllIlLGyll~R~~~il~~~~--~~~LnklV~~vaLPaLIF~sl~~~~--~~~l~~~~ila~~l~~li 81 (292)
|+..++..++-+++=+++|.+++||++.+.+.. .+.++.+.+. ++++..+..+. .....+..+.+..+..++
T Consensus 132 ~~~~i~~~~~~v~vPl~lG~~~r~~~p~~~~~~~~~~~~s~~~l~----liv~~~~~~~~~~i~~~~~~~~~~~~ll~~~ 207 (286)
T TIGR00841 132 PYLGIGLSLVAVLIPVSIGMLVKHKLPQIAKIILKVGLISVFLLS----VIIAVVGGINVENLATIGPLLLLVGILLPLA 207 (286)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCchHHHHHHH----HHHHHHHHhhHHHHHHhhHHHHHHHHHHHHH
Confidence 444454446677788899999998553322211 1122222222 22232222211 111123333444444556
Q ss_pred HHHHHHHHHHHHhCCcchhhheeeeeeccchhhhHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHH
Q 041574 82 VLVLLSVWAIFFKGGLDWLITLFSVATLPNTLVMGIPLLSAMYGEFTQSLMVQLVVLQCIIWYTLL 147 (292)
Q Consensus 82 ~~ll~~L~~rl~k~~~~~~~~l~~ls~f~NtgfmGiPLv~alfGe~gl~l~v~ivv~q~ii~~tl~ 147 (292)
.++++++++|.+|.+.++..++-..++..|++ +|++++...|+++.....+.+.+.+.+....+.
T Consensus 208 ~~~~g~~~a~~~~l~~~~~~t~~~~~g~qN~~-lal~la~~~f~~~~a~~~~~~~v~~~~~~~~~a 272 (286)
T TIGR00841 208 GFLLGYLLAKLAGLPWARCRTISIEVGMQNSQ-LCSTIAQLSFSPEVAVPSAIFPLIYALFQLAFA 272 (286)
T ss_pred HHHHHHHHHHHhCCCHhhheeeeeeeecccHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888888875442223332237778998 999999999986554444444445554443333
No 7
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=94.54 E-value=1.2 Score=42.63 Aligned_cols=113 Identities=12% Similarity=0.168 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHhHhhcCCCChhhHhHHHHHHHHHHHHHHHHHHhhcC---C-CCCchhHHHHHH-HHHH---HHHHH
Q 041574 13 AMVPLYFAMLIAYGSVKWWRIFTPQQCSGINRFVAVFAVPVLSFHFIAQN---N-PYQMDTKFILAD-TLSK---VLVLV 84 (292)
Q Consensus 13 ~IlPlfllIlLGyll~R~~~il~~~~~~~LnklV~~vaLPaLIF~sl~~~---~-~~~l~~~~ila~-~l~~---li~~l 84 (292)
..+-+++=+++|.+++||.+-..+. .+..-+.+-..++-.+++.++.+. + ..+.+...++.. .+.. ++.+.
T Consensus 163 L~~~vllP~~~Gq~~r~~~~~~~~~-~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 241 (313)
T PF13593_consen 163 LVLTVLLPLVLGQLLRRWVPKWVAR-HKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVLV 241 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444555567788888764422222 244455556667777777766554 1 112222222221 1111 12222
Q ss_pred HHHHHHHHHhCCcchhhheeeeeeccchhhhHHHHHHHhcCcc
Q 041574 85 LLSVWAIFFKGGLDWLITLFSVATLPNTLVMGIPLLSAMYGEF 127 (292)
Q Consensus 85 l~~L~~rl~k~~~~~~~~l~~ls~f~NtgfmGiPLv~alfGe~ 127 (292)
+.+...|.++-++++..++.. ++--.+.-+|+|++..+|++.
T Consensus 242 ~~~~~~r~~~~~~~d~iA~~F-~gs~Ksl~~gvpl~~~lf~~~ 283 (313)
T PF13593_consen 242 LGWLAARLLGFSRPDRIAVLF-CGSQKSLALGVPLASILFPGH 283 (313)
T ss_pred HHHHHHhhcCCChhhEEEEEE-EcCcCcchhHHHHHHHHcccc
Confidence 445566776644422133332 444688899999999999875
No 8
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=92.41 E-value=3.5 Score=40.26 Aligned_cols=122 Identities=15% Similarity=0.066 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhhcCCCChhhHhHHHHHHHHHHHHHHHHHHhh--cCCCCCc--hhHHHH----HHHHHHHH
Q 041574 10 VMCAMVPLYFAMLIAYGSVKWWRIFTPQQCSGINRFVAVFAVPVLSFHFIA--QNNPYQM--DTKFIL----ADTLSKVL 81 (292)
Q Consensus 10 vl~~IlPlfllIlLGyll~R~~~il~~~~~~~LnklV~~vaLPaLIF~sl~--~~~~~~l--~~~~il----a~~l~~li 81 (292)
++...+|+.+-++.=|++.||+|. +...+.+-..+--+++++|++.-+. ..+-+.. ++.-++ ...+...+
T Consensus 182 ~lyl~iPli~G~lTR~i~~k~kg~--~~~~~~f~p~ispi~ligLl~TivliF~~qg~~Iv~~p~~i~liAIpl~iy~~~ 259 (342)
T COG0798 182 LLYLGIPLIAGVLTRYILIKKKGR--EWYESRFLPKISPIALIGLLLTIVLIFAFQGEQIVEQPLDILLIAIPLLIYFLL 259 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc--hHHHHHHHhhcChHHHHHHHHHHHHHHHHhHHHHHhChHHHHHHHHHHHHHHHH
Confidence 344566776666666777774441 2233444444445666776665331 1111111 221111 22234445
Q ss_pred HHHHHHHHHHHHhCCcchhhheeeeeeccchhhhHHHHHHHhcC-cchhHHHHH
Q 041574 82 VLVLLSVWAIFFKGGLDWLITLFSVATLPNTLVMGIPLLSAMYG-EFTQSLMVQ 134 (292)
Q Consensus 82 ~~ll~~L~~rl~k~~~~~~~~l~~ls~f~NtgfmGiPLv~alfG-e~gl~l~v~ 134 (292)
++.+.+++.|..+-+.+. ..-.++++-+|+-=+.++++.++|| +.+.+.+..
T Consensus 260 ~~~i~~~i~k~lgl~y~~-~~~~~ft~aSNnfeLAiAvAi~lfG~~s~aA~a~v 312 (342)
T COG0798 260 MFFISYFIAKALGLPYED-AAALVFTGASNNFELAIAVAIALFGLTSGAALATV 312 (342)
T ss_pred HHHHHHHHHHHhCCChhh-hhceeeeeccccHHHHHHHHHHhcCccccchhhhh
Confidence 555666667777744433 2333346778999999999999999 555444433
No 9
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=92.36 E-value=2.6 Score=41.58 Aligned_cols=73 Identities=12% Similarity=0.147 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhhcCCCChhhHhHHHHHHHHHHHHHHHHHHhhcCCCCCc---hhHHHHHHHHHHHHHH
Q 041574 10 VMCAMVPLYFAMLIAYGSVKWWRIFTPQQCSGINRFVAVFAVPVLSFHFIAQNNPYQM---DTKFILADTLSKVLVL 83 (292)
Q Consensus 10 vl~~IlPlfllIlLGyll~R~~~il~~~~~~~LnklV~~vaLPaLIF~sl~~~~~~~l---~~~~ila~~l~~li~~ 83 (292)
++..+-|+.+++++|.++.- .|+++.+..+.+-+.+..+.+|+.++.-+.+.|.... ..+.++++.++.+.+.
T Consensus 21 ~f~~l~~~vl~~~~~~~lsn-lgli~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~v 96 (378)
T PF05684_consen 21 FFKYLPGAVLCYLLGMLLSN-LGLIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGTV 96 (378)
T ss_pred hHhhcCHHHHHHHHHHHHHH-CCCcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34566678899999999998 9999656667788999999999999999988888765 4566666665544433
No 10
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=90.42 E-value=1.6 Score=42.10 Aligned_cols=52 Identities=10% Similarity=-0.004 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCcchhhheeeeeeccchhhhHHHHHHHhcCcchh
Q 041574 77 LSKVLVLVLLSVWAIFFKGGLDWLITLFSVATLPNTLVMGIPLLSAMYGEFTQ 129 (292)
Q Consensus 77 l~~li~~ll~~L~~rl~k~~~~~~~~l~~ls~f~NtgfmGiPLv~alfGe~gl 129 (292)
+-.++.+.+.++.+|.+|.+.+...++....+..|. -+|++++...||+.+.
T Consensus 254 l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~-~lai~lA~~~f~~~~~ 305 (328)
T TIGR00832 254 IYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNF-ELAIAVAISLFGLNSG 305 (328)
T ss_pred HHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhH-HHHHHHHHHhCCCCcc
Confidence 334455566777788887444332333222454555 7999999999987543
No 11
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=87.31 E-value=19 Score=34.96 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhhcCCCChhhHhHHHH---HHHHHHHHHHHHHHhhcCCCCCchhHHH--HHHHHHHHHHHH
Q 041574 10 VMCAMVPLYFAMLIAYGSVKWWRIFTPQQCSGINR---FVAVFAVPVLSFHFIAQNNPYQMDTKFI--LADTLSKVLVLV 84 (292)
Q Consensus 10 vl~~IlPlfllIlLGyll~R~~~il~~~~~~~Lnk---lV~~vaLPaLIF~sl~~~~~~~l~~~~i--la~~l~~li~~l 84 (292)
+.+.++.+++=+.+|-++++|.+ +..+...+ .+-..++=+.++...+..........+. ++..+-.++.++
T Consensus 163 ~~~i~~~vllP~~LG~~~r~~~~----~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~~~~~~~v~~~v~~~n~lg~~ 238 (319)
T COG0385 163 FLSILLQVLLPFVLGQLLRPLLP----KWVERLKKALPPVSVLSILLIVYAAFSAAVENGIWSGLLIFVAVILHNLLGLL 238 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 33445556666777888877433 22333332 2333344444444444332222222222 233333445556
Q ss_pred HHHHHHHHHhCCcchhhheeeeeeccchhhhHHHHHHHhcC
Q 041574 85 LLSVWAIFFKGGLDWLITLFSVATLPNTLVMGIPLLSAMYG 125 (292)
Q Consensus 85 l~~L~~rl~k~~~~~~~~l~~ls~f~NtgfmGiPLv~alfG 125 (292)
+.+...|++|.+.+...++....+--|. =.|.|+...-+|
T Consensus 239 ~gy~~ar~~g~~~a~~iti~ie~g~qn~-~lg~alA~~f~~ 278 (319)
T COG0385 239 LGYFGARLLGFDKADEITIAIEGGMQNL-GLGAALAAAFFG 278 (319)
T ss_pred HHHHHHHHhCCChhheeeEEEeeccccH-HHHHHHHHhcCC
Confidence 6777788888554222344333555566 689999999444
No 12
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=78.90 E-value=8.2 Score=37.87 Aligned_cols=99 Identities=11% Similarity=0.024 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhHhhcCCCChhh---HhHHHHHHHHHHHHHHHH-HHhhcCCCCCc----hhHHHHHHHHHHHHHHHHHHH
Q 041574 17 LYFAMLIAYGSVKWWRIFTPQQ---CSGINRFVAVFAVPVLSF-HFIAQNNPYQM----DTKFILADTLSKVLVLVLLSV 88 (292)
Q Consensus 17 lfllIlLGyll~R~~~il~~~~---~~~LnklV~~vaLPaLIF-~sl~~~~~~~l----~~~~ila~~l~~li~~ll~~L 88 (292)
...++++|.+++. .++++++- .+...+|+.+...+++++ ..+...+++++ .+.+++......+.+.+..++
T Consensus 207 ~v~mII~~vi~k~-~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s~l 285 (347)
T TIGR00783 207 YAFMILIAAALKA-FGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILGGAF 285 (347)
T ss_pred HHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHHHHH
Confidence 5567788888898 99999864 455666777666666666 46776777654 244444444444444455677
Q ss_pred HHHHHhCCc-chhhhe-eeeeeccchhhhH
Q 041574 89 WAIFFKGGL-DWLITL-FSVATLPNTLVMG 116 (292)
Q Consensus 89 ~~rl~k~~~-~~~~~l-~~ls~f~NtgfmG 116 (292)
+.|+++-.+ |-..+. .+++..+-+|-++
T Consensus 286 vGKllG~YPiE~aItagLC~~~~GGtGDva 315 (347)
T TIGR00783 286 LGKLMGMYPVESAITAGLCNSGMGGTGDVA 315 (347)
T ss_pred HHHHhCCChHHHHHHHhhhccCCCCCCcee
Confidence 889888555 421111 1125555555444
No 13
>PRK04972 putative transporter; Provisional
Probab=73.87 E-value=54 Score=34.04 Aligned_cols=37 Identities=14% Similarity=0.061 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhCCcchhhheeeeeeccchhhhHHHHH
Q 041574 83 LVLLSVWAIFFKGGLDWLITLFSVATLPNTLVMGIPLL 120 (292)
Q Consensus 83 ~ll~~L~~rl~k~~~~~~~~l~~ls~f~NtgfmGiPLv 120 (292)
.++.+.+.++++-+......+++ ....|+.-+|...-
T Consensus 104 ~~~~~~~~~~~~~~~~~~~G~~a-Ga~T~tp~l~~a~~ 140 (558)
T PRK04972 104 LVIALGLGKLFGWDIGLTAGMLA-GSMTSTPVLVGAGD 140 (558)
T ss_pred HHHHHHHHHHhCCCHHHHHHHhh-ccccCcHHHHHHHH
Confidence 33445556777755544355555 67789988887754
No 14
>TIGR00807 malonate_madL malonate transporter, MadL subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=70.00 E-value=35 Score=28.73 Aligned_cols=82 Identities=11% Similarity=0.107 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhHhhcCCCChhhHhHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHH--HHHHHHHHHHHHHHHHHHH
Q 041574 14 MVPLYFAMLIAYGSVKWWRIFTPQQCSGINRFVAVFAVPVLSFHFIAQNNPYQMDTKFI--LADTLSKVLVLVLLSVWAI 91 (292)
Q Consensus 14 IlPlfllIlLGyll~R~~~il~~~~~~~LnklV~~vaLPaLIF~sl~~~~~~~l~~~~i--la~~l~~li~~ll~~L~~r 91 (292)
=+.++++|++...++| +|+++++..+++.-.-. .=.|..+--+-.++-...++...+ ++-..+..+++++.-++.|
T Consensus 37 GiAMlLLi~~~~~l~k-~G~l~~~te~Gi~FW~a-MYIPIVVAMAA~QNVv~Al~gG~~Allagi~av~~~~~~i~~l~r 114 (125)
T TIGR00807 37 GIAMILLIISKELLAK-RGHLPQVTQFGVGFWSA-MYIPIVVAMAAGQNVVAALSGGMLALLASVAALIVTVLVIRWISK 114 (125)
T ss_pred HHHHHHHHHHHHHHHH-cCCCChhHHhHHHHHHc-cHhHHHHHHhhhchhHHHhcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999 99999999999884332 224666655555544444433322 2323344444444444556
Q ss_pred HHhCCc
Q 041574 92 FFKGGL 97 (292)
Q Consensus 92 l~k~~~ 97 (292)
+.++..
T Consensus 115 ~g~~~~ 120 (125)
T TIGR00807 115 SSYGTY 120 (125)
T ss_pred hCCCCC
Confidence 555433
No 15
>COG3329 Predicted permease [General function prediction only]
Probab=68.52 E-value=82 Score=30.88 Aligned_cols=113 Identities=9% Similarity=0.043 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHhHhhcCCCChhhHhHHHHHHHHHHHHHHHHHHhhcCCCCCc---hhHHHHHHHHHHHHHHHHHHH
Q 041574 12 CAMVPLYFAMLIAYGSVKWWRIFTPQQCSGINRFVAVFAVPVLSFHFIAQNNPYQM---DTKFILADTLSKVLVLVLLSV 88 (292)
Q Consensus 12 ~~IlPlfllIlLGyll~R~~~il~~~~~~~LnklV~~vaLPaLIF~sl~~~~~~~l---~~~~ila~~l~~li~~ll~~L 88 (292)
+.+-|..+...+|.+..- .|- +-+.-+.+.+-+....+=|.=|+.=.....+.+ -........+..++.+...++
T Consensus 14 nL~sP~llFf~~Gmlia~-~ks-dl~iP~~i~~~lslyLL~aIG~kGGveir~snl~a~v~~~~~~~aL~~li~~ia~f~ 91 (372)
T COG3329 14 NLLSPTLLFFILGMLIAA-FKS-DLEIPEAIYQALSLYLLLAIGFKGGVEIRNSNLTAMVLPVALGVALGFLIVFIAYFL 91 (372)
T ss_pred hhccchHHHHHHHHHHHH-Hhc-cccCchHHHHHHHHHHHHHHhcccceeeecCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 445578888888888765 332 223334555555555555666664433333333 233334555666666666666
Q ss_pred HHHHHhCCc-chhhheeeeeeccchhhhHHHHHHHhcCcchh
Q 041574 89 WAIFFKGGL-DWLITLFSVATLPNTLVMGIPLLSAMYGEFTQ 129 (292)
Q Consensus 89 ~~rl~k~~~-~~~~~l~~ls~f~NtgfmGiPLv~alfGe~gl 129 (292)
.+|+.|-+. +. ++.- ..|+.+.-.-+.-+....-+.++
T Consensus 92 l~kl~~vdtvda-aA~a--g~yGsvS~~Tfaaa~t~Lee~gi 130 (372)
T COG3329 92 LRKLPKVDTVDA-AATA--GTYGSVSAVTFAAAVTFLEESGI 130 (372)
T ss_pred HHHccccchHHH-HHHH--hhccchhHHHHHHHHHHHHHcCc
Confidence 777766333 32 2221 45555555555556666655555
No 16
>PF03817 MadL: Malonate transporter MadL subunit; InterPro: IPR004690 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=63.12 E-value=58 Score=27.45 Aligned_cols=80 Identities=13% Similarity=0.137 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhHhhcCCCChhhHhHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHH--HHHHHHHHHHHHHHHHHHH
Q 041574 14 MVPLYFAMLIAYGSVKWWRIFTPQQCSGINRFVAVFAVPVLSFHFIAQNNPYQMDTKFI--LADTLSKVLVLVLLSVWAI 91 (292)
Q Consensus 14 IlPlfllIlLGyll~R~~~il~~~~~~~LnklV~~vaLPaLIF~sl~~~~~~~l~~~~i--la~~l~~li~~ll~~L~~r 91 (292)
=+.++++|++...+.| ++.++++..+++.-.-. .=.|..+--+-.++-...++...+ ++-..+.++.+++.-++.|
T Consensus 37 GiAMlLLI~~~~~l~k-~g~l~~~te~Gi~FW~a-mYIPIVVAMAA~QNVv~Al~gG~~Allagi~av~~~~~~ip~lsr 114 (125)
T PF03817_consen 37 GIAMLLLIFARLWLQK-KGLLSKPTEQGIEFWSA-MYIPIVVAMAAQQNVVAALSGGPVALLAGIGAVAVCFLLIPLLSR 114 (125)
T ss_pred HHHHHHHHHHHHHHHH-cCCCChHHHhHHHHHHc-cHHHHHHHHhhhhhhHHhhcCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 3567889999999999 99999999999884332 235766665555554444433322 2223333444444444455
Q ss_pred HHhC
Q 041574 92 FFKG 95 (292)
Q Consensus 92 l~k~ 95 (292)
+-++
T Consensus 115 ~g~~ 118 (125)
T PF03817_consen 115 IGRK 118 (125)
T ss_pred cCCC
Confidence 4443
No 17
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=62.00 E-value=1.7e+02 Score=28.87 Aligned_cols=134 Identities=13% Similarity=0.086 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHh-HhhcCCCChhhHhHHHHHHHHHHHHHHHHHHhhcCCCCCc---hhHHHHHHHHHHHHHHHHHHHH
Q 041574 14 MVPLYFAMLIAYGS-VKWWRIFTPQQCSGINRFVAVFAVPVLSFHFIAQNNPYQM---DTKFILADTLSKVLVLVLLSVW 89 (292)
Q Consensus 14 IlPlfllIlLGyll-~R~~~il~~~~~~~LnklV~~vaLPaLIF~sl~~~~~~~l---~~~~ila~~l~~li~~ll~~L~ 89 (292)
.+|-.+++-+|-.. .. .|.|+ .++....-|-+..+|++++.-+.+-|..+. ..+++..++.+.+..++-..++
T Consensus 31 ~Vpa~v~iy~gamff~t-~Glfs--~~S~~y~~v~n~llpamI~lmLlqcd~Rki~Klg~rll~ifli~sv~~vlGfIl~ 107 (384)
T COG5505 31 AVPAAVIIYAGAMFFTT-VGLFS--VESPVYDTVWNYLLPAMIPLMLLQCDVRKIFKLGRRLLFIFLISSVGTVLGFILA 107 (384)
T ss_pred hhhHHHHHHHHHHHHhh-ccccc--ccCcHHHHHHHHHHHHHHHHHHHHccHHHHHhhcchhhHHHHHHHHHHHHHHHHH
Confidence 34555555555444 44 78884 677778888888999999998888877655 4455555544433333322333
Q ss_pred HHHHh---CCc-chhhheeeeeeccchhhhHHHHHHHhcCcch--hHHHHHHHHHHHHHHHHHHHHHHHh
Q 041574 90 AIFFK---GGL-DWLITLFSVATLPNTLVMGIPLLSAMYGEFT--QSLMVQLVVLQCIIWYTLLLFLFEY 153 (292)
Q Consensus 90 ~rl~k---~~~-~~~~~l~~ls~f~NtgfmGiPLv~alfGe~g--l~l~v~ivv~q~ii~~tl~l~lle~ 153 (292)
...+| .+. +-...+.+ +.-+-..+| .-+++.+--.+ ..++.....+..-+|+.+.+.+..+
T Consensus 108 yp~~ksf~gd~Wka~gmi~g-SytGGSaNm--AAmqaaLeVP~~~fsatlaaDtv~ySll~~lli~iVpy 174 (384)
T COG5505 108 YPLLKSFIGDLWKAGGMISG-SYTGGSANM--AAMQAALEVPGEYFSATLAADTVMYSLLFFLLISIVPY 174 (384)
T ss_pred HHHHhhhcchHHhhhhheee-eeeCCcchH--HHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 211 11122222 222333333 23445553222 2343445555556777777766654
No 18
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=55.29 E-value=1.2e+02 Score=29.74 Aligned_cols=134 Identities=12% Similarity=0.106 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhHhhcCCCChhhHhHHHHHHHHHHHHHHHHH---HhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 041574 16 PLYFAMLIAYGSVKWWRIFTPQQCSGINRFVAVFAVPVLSFH---FIAQNNPYQMDTKFILADTLSKVLVLVLLSVWAIF 92 (292)
Q Consensus 16 PlfllIlLGyll~R~~~il~~~~~~~LnklV~~vaLPaLIF~---sl~~~~~~~l~~~~ila~~l~~li~~ll~~L~~rl 92 (292)
|..+..++|.++.. .|- |-+.-+.+.|++-.+.+=+.=|+ .+.+.+....-...+.+..++.++-+....+.+|+
T Consensus 1 P~vLFF~LG~~A~~-~kS-dL~iP~~i~k~lsiyLLlaIGlkGG~~l~~~~~~~~~~~~~~~~~lg~liPl~~~~iLr~~ 78 (327)
T PF05982_consen 1 PVVLFFILGIIAAL-LKS-DLEIPEAIYKFLSIYLLLAIGLKGGVELAHSGLTALLLPLLAAVLLGILIPLIAFPILRRL 78 (327)
T ss_pred CchHHHHHHHHHHH-HcC-CCcCChhHHHHHHHHHHHHHhcccHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44455666777765 332 33455667777776766666666 33333332222222233334434444444555666
Q ss_pred HhCCcchhhheeeeeeccchhhhHHHHHHHhcCcchh---HHHHHHHHHHHHHHHHHHHHHHHh
Q 041574 93 FKGGLDWLITLFSVATLPNTLVMGIPLLSAMYGEFTQ---SLMVQLVVLQCIIWYTLLLFLFEY 153 (292)
Q Consensus 93 ~k~~~~~~~~l~~ls~f~NtgfmGiPLv~alfGe~gl---~l~v~ivv~q~ii~~tl~l~lle~ 153 (292)
.|-++...+.+ + +.|+...-.-+-...+....+++ .++..++.+--..=.-+++++.+.
T Consensus 79 ~~l~~~daaAi-A-AhYGSVSavTF~~a~~~L~~~gi~yeg~m~a~~alME~PAIival~L~~~ 140 (327)
T PF05982_consen 79 GKLDRADAAAI-A-AHYGSVSAVTFAAALAFLESQGISYEGYMVALLALMESPAIIVALLLARL 140 (327)
T ss_pred cCCChhhHHHH-H-HHcCchHHHHHHHHHHHHHHCCCCccccHHHHHHHHhhhHHHHHHHHHHH
Confidence 66444221222 2 45556555556666666655555 344333333322223344555443
No 19
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=55.08 E-value=1.1e+02 Score=31.66 Aligned_cols=107 Identities=16% Similarity=0.097 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhcCCCChhhH----------------hHHHHHHHHHHHHHHHHHHhhcCCCCC---c---h
Q 041574 11 MCAMVPLYFAMLIAYGSVKWWRIFTPQQC----------------SGINRFVAVFAVPVLSFHFIAQNNPYQ---M---D 68 (292)
Q Consensus 11 l~~IlPlfllIlLGyll~R~~~il~~~~~----------------~~LnklV~~vaLPaLIF~sl~~~~~~~---l---~ 68 (292)
-+.++-+|+.+++||+++| .|+-.=..- -.+...+..+.+=..+|.-=.+..+.- + .
T Consensus 9 ~~p~l~lfl~i~lG~~lG~-iki~~~~LG~~~gvLfvgl~~G~~g~~i~~~v~~~gl~lFvy~vG~~~Gp~Ff~~l~~~g 87 (562)
T TIGR03802 9 SNPEIALFLSLALGYLIGK-IKFGSFQLGGVAGSLIVAVLIGQLGIQIDPGVKAVFFALFIFAIGYEVGPQFFASLKKDG 87 (562)
T ss_pred HCHHHHHHHHHHHhHhhcc-eEEeeeecchHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhhccCHHHHHHHHhcc
Confidence 3558889999999999998 665221111 012222333333222222112221111 1 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhhheeeeeeccchhhhHHHH
Q 041574 69 TKFILADTLSKVLVLVLLSVWAIFFKGGLDWLITLFSVATLPNTLVMGIPL 119 (292)
Q Consensus 69 ~~~ila~~l~~li~~ll~~L~~rl~k~~~~~~~~l~~ls~f~NtgfmGiPL 119 (292)
+++.+...+..++.+++.+.+.++++-+....+.+++ ....||--+|-..
T Consensus 88 ~~~~~~a~~~~~~~~~~~~~~~~~~g~~~~~~~Gl~a-GalT~tp~l~aA~ 137 (562)
T TIGR03802 88 LREIILALVFAVSGLITVYALAKIFGLDKGTAAGLAA-GGLTQSAVIGTAG 137 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHh-chhhccHHHHHHH
Confidence 3333333333344444556667778765554456666 6778998888764
No 20
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=53.80 E-value=1.1e+02 Score=30.87 Aligned_cols=80 Identities=13% Similarity=0.167 Sum_probs=54.6
Q ss_pred HHHHHHHHHhHhhcCCCChhhHhHHHHHH-----HHHHHHHHHHHHhhcCCCCCc---hhHHHHHHHHHHHHHHHHHHHH
Q 041574 18 YFAMLIAYGSVKWWRIFTPQQCSGINRFV-----AVFAVPVLSFHFIAQNNPYQM---DTKFILADTLSKVLVLVLLSVW 89 (292)
Q Consensus 18 fllIlLGyll~R~~~il~~~~~~~LnklV-----~~vaLPaLIF~sl~~~~~~~l---~~~~ila~~l~~li~~ll~~L~ 89 (292)
.+.++..-.+.- +++++++..+.+++|. .|+..-+|+--++...|.+.+ ..+++...+.+.+..+++..+.
T Consensus 63 il~~f~ps~Lv~-~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklLika~~r~~p~il~g~~~a~~~g~lv 141 (414)
T PF03390_consen 63 ILCIFVPSALVY-FGLIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLLIKAFARFIPPILGGVIGAFLLGGLV 141 (414)
T ss_pred HHHHHHHHHHHH-cCCCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445554 7999998888888876 567788899889988887665 4466666555655555666666
Q ss_pred HHHHhCCcc
Q 041574 90 AIFFKGGLD 98 (292)
Q Consensus 90 ~rl~k~~~~ 98 (292)
..+++.+..
T Consensus 142 G~l~G~~~~ 150 (414)
T PF03390_consen 142 GMLFGYSFK 150 (414)
T ss_pred HHHhCCCHH
Confidence 667765554
No 21
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.64 E-value=15 Score=28.22 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcCCCChhhHhHHHHH
Q 041574 7 FYKVMCAMVPLYFAMLIAYGSVKWWRIFTPQQCSGINRF 45 (292)
Q Consensus 7 m~~vl~~IlPlfllIlLGyll~R~~~il~~~~~~~Lnkl 45 (292)
++..+..++-+.+.|.+||+.+| +-+ +..+.+|..+
T Consensus 4 ~lltFg~Fllvi~gMsiG~I~kr-k~I--~GSCGGi~al 39 (77)
T COG2991 4 FLLTFGIFLLVIAGMSIGYIFKR-KSI--KGSCGGIAAL 39 (77)
T ss_pred HHHHHHHHHHHHHHHhHhhheec-ccc--ccccccHHhh
Confidence 44567778888999999999998 543 2356666544
No 22
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=49.84 E-value=1.3e+02 Score=32.87 Aligned_cols=115 Identities=9% Similarity=0.102 Sum_probs=55.6
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHhhcCCCCCc-hh---HHHHHHHH-HHHHHHHHHHHHHHHHhCCcchhhheeeeeecc
Q 041574 36 PQQCSGINRFVAVFAVPVLSFHFIAQNNPYQM-DT---KFILADTL-SKVLVLVLLSVWAIFFKGGLDWLITLFSVATLP 110 (292)
Q Consensus 36 ~~~~~~LnklV~~vaLPaLIF~sl~~~~~~~l-~~---~~ila~~l-~~li~~ll~~L~~rl~k~~~~~~~~l~~ls~f~ 110 (292)
.+..+.+..++..+.+|......=.+.|+..+ +. .+++...+ +.+.=++..++.+++++-+.+. +...+ ....
T Consensus 313 ~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~e-al~lG-~lm~ 390 (832)
T PLN03159 313 VTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFRE-GITLG-FLMN 390 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH-HHHHH-HHHh
Confidence 44567788889999999988876666666443 21 11111111 1111112234455666644432 22222 1111
Q ss_pred chhhhHHHHHH-----HhcCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 041574 111 NTLVMGIPLLS-----AMYGEFTQSLMVQLVVLQCIIWYTLLLFLFE 152 (292)
Q Consensus 111 NtgfmGiPLv~-----alfGe~gl~l~v~ivv~q~ii~~tl~l~lle 152 (292)
--|.+.+-++. .+.+++....++...++.+.+..++...++.
T Consensus 391 ~kG~~~Lii~~ig~~~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly~ 437 (832)
T PLN03159 391 TKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVYR 437 (832)
T ss_pred cccHHHHHHHHHHHhcCccCchhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 22333333333 3445555444444444556666676666544
No 23
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=49.48 E-value=2.2e+02 Score=26.51 Aligned_cols=29 Identities=17% Similarity=0.014 Sum_probs=20.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 041574 38 QCSGINRFVAVFAVPVLSFHFIAQNNPYQM 67 (292)
Q Consensus 38 ~~~~LnklV~~vaLPaLIF~sl~~~~~~~l 67 (292)
..+.|+ .+.-+++|.-++.++++.++..+
T Consensus 257 ~mk~LT-vvt~IflP~t~IaGiyGMNf~~m 285 (318)
T TIGR00383 257 IMKILT-VVSTIFIPLTFIAGIYGMNFKFM 285 (318)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhCCcccC
Confidence 445554 34457888888888888877644
No 24
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=45.21 E-value=1.2e+02 Score=30.56 Aligned_cols=82 Identities=10% Similarity=-0.009 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhHhhcCCCChh---hHhHHHHHHHHHHHHHHHHH-HhhcCCCCCc----hhHHHHHHHHHHHHHHHHHH
Q 041574 16 PLYFAMLIAYGSVKWWRIFTPQ---QCSGINRFVAVFAVPVLSFH-FIAQNNPYQM----DTKFILADTLSKVLVLVLLS 87 (292)
Q Consensus 16 PlfllIlLGyll~R~~~il~~~---~~~~LnklV~~vaLPaLIF~-sl~~~~~~~l----~~~~ila~~l~~li~~ll~~ 87 (292)
|-++.|.+=....|..++++++ ..+...+|+.+-..|++++- .+.-.|.++. ++.+++......+.+.+..+
T Consensus 272 h~~a~mIi~~~i~K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~ 351 (414)
T PF03390_consen 272 HAYAWMIILVAIVKAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLATVLGAVIGAF 351 (414)
T ss_pred cHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455558999974 56678888888888877776 6665666654 34444443333333344566
Q ss_pred HHHHHHhCCc
Q 041574 88 VWAIFFKGGL 97 (292)
Q Consensus 88 L~~rl~k~~~ 97 (292)
++.|+++-.+
T Consensus 352 ~vG~l~g~YP 361 (414)
T PF03390_consen 352 LVGKLVGFYP 361 (414)
T ss_pred HHHHHhCCCh
Confidence 7788888444
No 25
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=44.52 E-value=1.5e+02 Score=24.84 Aligned_cols=24 Identities=8% Similarity=0.195 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHh
Q 041574 6 DFYKVMCAMVPLYFAMLIAYGSVK 29 (292)
Q Consensus 6 dm~~vl~~IlPlfllIlLGyll~R 29 (292)
++..+++.++.++...+.||++.+
T Consensus 78 qls~v~Nilvsv~~~~~~~~~~~~ 101 (142)
T PF11712_consen 78 QLSTVFNILVSVFAVFFAGWYWAG 101 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677888888888888886655
No 26
>PRK09528 lacY galactoside permease; Reviewed
Probab=38.99 E-value=3.5e+02 Score=25.72 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=12.7
Q ss_pred HHHHHhhhcccchhccCCC
Q 041574 148 LFLFEYRAATVLIQTQFPG 166 (292)
Q Consensus 148 l~lle~~~ak~~i~~~~~~ 166 (292)
....+.++...+.++|.||
T Consensus 400 ~~~~~~~~~~~~~~~~~~~ 418 (420)
T PRK09528 400 VFTLSGDRELSLLRRQVPE 418 (420)
T ss_pred HHHhcCCchhhHHHhhCcc
Confidence 3344445567778999998
No 27
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=38.95 E-value=3.2e+02 Score=25.30 Aligned_cols=113 Identities=13% Similarity=0.089 Sum_probs=66.2
Q ss_pred ChhhHhHHHHHHHHHHHHHHHHHHh--hcCCCCCc--hhHHH-HHHHHHHHHHHHHHHHHHHHHhCCcchhhheeeeeec
Q 041574 35 TPQQCSGINRFVAVFAVPVLSFHFI--AQNNPYQM--DTKFI-LADTLSKVLVLVLLSVWAIFFKGGLDWLITLFSVATL 109 (292)
Q Consensus 35 ~~~~~~~LnklV~~vaLPaLIF~sl--~~~~~~~l--~~~~i-la~~l~~li~~ll~~L~~rl~k~~~~~~~~l~~ls~f 109 (292)
+-++-..=.+++.++.=|+.+--++ ++. .+.+ ++..+ .....+.++.....++++++++.+.+ ...++...
T Consensus 50 ~Y~~Y~~g~~~l~~lLgPAtVALAvPLY~~-~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~---i~~Sl~pk 125 (226)
T TIGR00659 50 PYESYMLGGGVINDLLGPAVVALAIPLYKQ-LPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPE---IIASLLPK 125 (226)
T ss_pred CHHHHHHhhHHHHHhhHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH---HHHHhhhH
Confidence 4333344455666666677666555 222 1122 33333 33344445555556667788875543 23344666
Q ss_pred cchhhhHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 041574 110 PNTLVMGIPLLSAMYGEFTQSLMVQLVVLQCIIWYTLLLFLFEY 153 (292)
Q Consensus 110 ~NtgfmGiPLv~alfGe~gl~l~v~ivv~q~ii~~tl~l~lle~ 153 (292)
+=|.=+++++.+.+=|+.++. +.+++..-++=..++-.+++.
T Consensus 126 SvTtpiAm~vs~~iGG~~sLt--a~~vvitGi~Ga~~g~~ll~~ 167 (226)
T TIGR00659 126 SVTTPIAMHVSEMIGGIPAVT--AVFVILTGLLGTVFGPMVLRY 167 (226)
T ss_pred HhhHHHHHHHHHHhCChHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 778889999999999988864 445666666665666666654
No 28
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=38.92 E-value=2.6e+02 Score=26.61 Aligned_cols=61 Identities=8% Similarity=0.015 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHhhcCCCChhhHhHHHHHHHHHHHHHHHHHHhhcCCCCCc---hhHH
Q 041574 5 NDFYKVMCAMVPLYFAMLIAYGSVKWWRIFTPQQCSGINRFVAVFAVPVLSFHFIAQNNPYQM---DTKF 71 (292)
Q Consensus 5 ~dm~~vl~~IlPlfllIlLGyll~R~~~il~~~~~~~LnklV~~vaLPaLIF~sl~~~~~~~l---~~~~ 71 (292)
.++...+..++-...=..++.+.-+ . .+..+.++ .+.-+.+|.-++.++++.++..+ ++.+
T Consensus 233 ~~~~~~~~~~l~~l~d~~~s~is~~-~----N~imk~LT-i~s~iflPpTlIagiyGMNf~~mPel~~~~ 296 (322)
T COG0598 233 IEMLEALRERLSSLLDAYLSLINNN-Q----NEIMKILT-IVSTIFLPPTLITGFYGMNFKGMPELDWPY 296 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-H----HHHHHHHH-HHHHHHHhhHHHHcccccCCCCCcCCCCcc
Confidence 3445555555555555666666655 2 12344444 45567888888889988887754 5554
No 29
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=36.37 E-value=2e+02 Score=28.28 Aligned_cols=53 Identities=8% Similarity=0.135 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCc-h-h-HHHHHHHHHHHHHHH-HHHHHHHHHhCCcc
Q 041574 46 VAVFAVPVLSFHFIAQNNPYQM-D-T-KFILADTLSKVLVLV-LLSVWAIFFKGGLD 98 (292)
Q Consensus 46 V~~vaLPaLIF~sl~~~~~~~l-~-~-~~ila~~l~~li~~l-l~~L~~rl~k~~~~ 98 (292)
+-.+++=.++..++.+.+...+ + . .+++...++.+++.+ ..++..|+++++.|
T Consensus 280 I~~~sL~~fl~~almsl~l~~l~~~a~Plliil~~q~i~~~~f~~fv~fr~~gkdyd 336 (368)
T PF03616_consen 280 ISGISLDLFLAMALMSLKLWVLADYALPLLIILAVQTILMVLFAYFVTFRVMGKDYD 336 (368)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCChh
Confidence 4445555566777777776655 2 2 233333344333333 33445677766665
No 30
>PRK09546 zntB zinc transporter; Reviewed
Probab=35.80 E-value=81 Score=29.93 Aligned_cols=24 Identities=13% Similarity=0.048 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCc
Q 041574 44 RFVAVFAVPVLSFHFIAQNNPYQM 67 (292)
Q Consensus 44 klV~~vaLPaLIF~sl~~~~~~~l 67 (292)
+++.-+++|.-++.++++.++..+
T Consensus 268 tilt~IflPlT~IaGiyGMNf~~m 291 (324)
T PRK09546 268 SLMAMVFLPTTFLTGLFGVNLGGI 291 (324)
T ss_pred HHHHHHHHHHHHHHhhhccccCCC
Confidence 345557889999999998887654
No 31
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=35.07 E-value=3.6e+02 Score=24.70 Aligned_cols=116 Identities=11% Similarity=0.039 Sum_probs=70.4
Q ss_pred CChhhHhHHHHHHHHHHHHHHHHHHh--hcCCCCCc-hhHHH-HHHHHHHHHHHHHHHHHHHHHhCCcchhhheeeeeec
Q 041574 34 FTPQQCSGINRFVAVFAVPVLSFHFI--AQNNPYQM-DTKFI-LADTLSKVLVLVLLSVWAIFFKGGLDWLITLFSVATL 109 (292)
Q Consensus 34 l~~~~~~~LnklV~~vaLPaLIF~sl--~~~~~~~l-~~~~i-la~~l~~li~~ll~~L~~rl~k~~~~~~~~l~~ls~f 109 (292)
++-++-..=.+++.++.=|+.+-.++ ++...... ++..+ .....+.++.....+++.++++.+.+ ...++...
T Consensus 39 i~y~~Y~~gg~~l~~lLgPatVALAvPLY~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~---~~~Sl~pk 115 (215)
T PF04172_consen 39 IPYEDYMQGGDILSFLLGPATVALAVPLYRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPE---IILSLAPK 115 (215)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH---HHHHHHHH
Confidence 35455555578888888888776665 33221111 44333 34444555555556666788875443 23334556
Q ss_pred cchhhhHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041574 110 PNTLVMGIPLLSAMYGEFTQSLMVQLVVLQCIIWYTLLLFLFEYR 154 (292)
Q Consensus 110 ~NtgfmGiPLv~alfGe~gl~l~v~ivv~q~ii~~tl~l~lle~~ 154 (292)
+=|.=+++++.+.+=|+.++. +.+++..-++=..++-.+++.-
T Consensus 116 SVTtpiAi~is~~iGG~~sLt--a~~VvitGi~Ga~~g~~llk~~ 158 (215)
T PF04172_consen 116 SVTTPIAIEISEQIGGIPSLT--AVFVVITGILGAVLGPPLLKLL 158 (215)
T ss_pred HhhHHHHHHHHHHhCChHHHH--HHHHHHHhhHHHHhHHHHHhHc
Confidence 677789999999999998864 4455555555555566666543
No 32
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=33.85 E-value=42 Score=28.31 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHhHhhcCC
Q 041574 13 AMVPLYFAMLIAYGSVKWWRI 33 (292)
Q Consensus 13 ~IlPlfllIlLGyll~R~~~i 33 (292)
.++|..++-++||+..||+||
T Consensus 8 ~i~paa~~gavGY~Y~wwKGw 28 (126)
T PF07889_consen 8 LIVPAAAIGAVGYGYMWWKGW 28 (126)
T ss_pred hhhHHHHHHHHHheeeeecCC
Confidence 478999999999999988887
No 33
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=32.34 E-value=4.2e+02 Score=24.71 Aligned_cols=106 Identities=14% Similarity=0.125 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHh--hcCCCCCc--hhHHHH-HHHHHHHHHHHHHHHHHHHHhCCcchhhheeeeeeccchhhhHH
Q 041574 43 NRFVAVFAVPVLSFHFI--AQNNPYQM--DTKFIL-ADTLSKVLVLVLLSVWAIFFKGGLDWLITLFSVATLPNTLVMGI 117 (292)
Q Consensus 43 nklV~~vaLPaLIF~sl--~~~~~~~l--~~~~il-a~~l~~li~~ll~~L~~rl~k~~~~~~~~l~~ls~f~NtgfmGi 117 (292)
++++.++.-|+.+--++ +++ .+.+ +|..++ ...++.++.....++++|+++-+.+ ...++.--+=|.=+++
T Consensus 61 ~~~i~~lLgPAtVAlAvPLYkq-~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~---~~~Sl~PkSvTTpiAm 136 (230)
T COG1346 61 GQWINFLLGPATVALAVPLYKQ-RHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPE---LILSLLPKSVTTPIAM 136 (230)
T ss_pred cHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH---HHHHhcccccccHHHH
Confidence 44555566676665554 222 1222 444443 3344555555566777888875544 2223344455668899
Q ss_pred HHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041574 118 PLLSAMYGEFTQSLMVQLVVLQCIIWYTLLLFLFEYR 154 (292)
Q Consensus 118 PLv~alfGe~gl~l~v~ivv~q~ii~~tl~l~lle~~ 154 (292)
++...+=|...+. +..++..-++=..++-.+++.-
T Consensus 137 ~vs~~iGGip~lt--av~Vi~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 137 EVSESIGGIPALT--AVFVILTGILGAVLGPLLLKLL 171 (230)
T ss_pred HHHHhcCCchHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998988864 3455555566666665555543
No 34
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=31.64 E-value=80 Score=23.55 Aligned_cols=27 Identities=11% Similarity=0.359 Sum_probs=17.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhHhhc
Q 041574 3 TGNDFYKVMCAMVPLYFAMLIAYGSVKWW 31 (292)
Q Consensus 3 ~~~dm~~vl~~IlPlfllIlLGyll~R~~ 31 (292)
+.+|+..++ ++-..+.+.+||++++|.
T Consensus 2 ~i~DiiQii--~l~AlI~~pLGyl~~~~~ 28 (62)
T PF11120_consen 2 NISDIIQII--ILCALIFFPLGYLARRWL 28 (62)
T ss_pred CHHHHHHHH--HHHHHHHHhHHHHHHHHh
Confidence 455655543 334556778899999854
No 35
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=30.00 E-value=43 Score=30.28 Aligned_cols=29 Identities=17% Similarity=-0.011 Sum_probs=18.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 041574 38 QCSGINRFVAVFAVPVLSFHFIAQNNPYQM 67 (292)
Q Consensus 38 ~~~~LnklV~~vaLPaLIF~sl~~~~~~~l 67 (292)
..+.++-+.+ +++|+-++.++.+.++..+
T Consensus 233 ~m~~LT~~t~-iflPlt~i~g~fGMN~~~~ 261 (292)
T PF01544_consen 233 VMKVLTIVTA-IFLPLTFITGIFGMNFKGM 261 (292)
T ss_dssp HHHHHHHHHH-HHHHHHHHTTSTTS-SS--
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhhCCccCC
Confidence 4455554444 5599999999988877643
No 36
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=28.82 E-value=3.4e+02 Score=26.46 Aligned_cols=49 Identities=16% Similarity=0.085 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhcCCCCCc-hh--HHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Q 041574 50 AVPVLSFHFIAQNNPYQM-DT--KFILADTLSKVLVLVLLSVWAIFFKGGLD 98 (292)
Q Consensus 50 aLPaLIF~sl~~~~~~~l-~~--~~ila~~l~~li~~ll~~L~~rl~k~~~~ 98 (292)
.+|...|.-=.+.++++. .. .-++...+..++.+.+.+...|++|.+.+
T Consensus 197 ~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~rllg~~~~ 248 (312)
T PRK12460 197 LIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFADRLVGGTGI 248 (312)
T ss_pred eHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence 677766654455555444 22 22222233334444444555677765443
No 37
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=28.17 E-value=4.9e+02 Score=24.19 Aligned_cols=111 Identities=13% Similarity=0.097 Sum_probs=65.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHh--hcCCCCCc--hhHHH-HHHHHHHHHHHHHHHHHHHHHhCCcchhhheeeeeeccc
Q 041574 37 QQCSGINRFVAVFAVPVLSFHFI--AQNNPYQM--DTKFI-LADTLSKVLVLVLLSVWAIFFKGGLDWLITLFSVATLPN 111 (292)
Q Consensus 37 ~~~~~LnklV~~vaLPaLIF~sl--~~~~~~~l--~~~~i-la~~l~~li~~ll~~L~~rl~k~~~~~~~~l~~ls~f~N 111 (292)
++-..=++++.++.=|+.+--++ ++. .+.+ ++..+ ....++.++..+..++++++++.+.+ ...++..-+=
T Consensus 58 ~~Y~~g~~~l~~lLgPAtVALAvPLY~q-~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~---~~~Sl~pKSV 133 (232)
T PRK04288 58 EEYNIGGDIISFFLEPATIAFAIPLYKK-RDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNA---VMASMLPQAA 133 (232)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH---HHHHHhhHhh
Confidence 33333456666677777766655 332 1222 33333 34444445555556667788875443 2333455566
Q ss_pred hhhhHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 041574 112 TLVMGIPLLSAMYGEFTQSLMVQLVVLQCIIWYTLLLFLFEY 153 (292)
Q Consensus 112 tgfmGiPLv~alfGe~gl~l~v~ivv~q~ii~~tl~l~lle~ 153 (292)
|.=+++++...+=|..++. +.+++..-++=..++-.+++.
T Consensus 134 TtPIAm~is~~iGG~psLt--A~~ViitGi~Gai~g~~llk~ 173 (232)
T PRK04288 134 TTAIALPVSAGIGGIKEIT--SFAVIFNAVIIYALGAKFLKL 173 (232)
T ss_pred hHHHHHHHHHHhCCcHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999988864 445566666666666666654
No 38
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=27.30 E-value=2.8e+02 Score=24.19 Aligned_cols=51 Identities=20% Similarity=0.365 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCc-hhHHHHHHHHHHHHHHHHH-HHHHHHHh
Q 041574 44 RFVAVFAVPVLSFHFIAQNNPYQM-DTKFILADTLSKVLVLVLL-SVWAIFFK 94 (292)
Q Consensus 44 klV~~vaLPaLIF~sl~~~~~~~l-~~~~ila~~l~~li~~ll~-~L~~rl~k 94 (292)
|++..+++=.++++-..+.+.... +.++.....++.++.++++ +-+.++++
T Consensus 3 r~liL~~~~~l~~~l~~sG~i~~YI~P~~~~~~~~a~i~l~ilai~q~~~~~~ 55 (182)
T PF09323_consen 3 RFLILLGFGILLFYLILSGKILLYIHPRYIPLLYFAAILLLILAIVQLWRWFR 55 (182)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666777777777766655444 5555443333333333322 22334454
No 39
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=27.02 E-value=4.3e+02 Score=23.11 Aligned_cols=117 Identities=13% Similarity=0.097 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhHhhcCCC-ChhhHhHHHHHHHHHHHHHH-------HHHHhhcCCCCCchhHHHHHHHHHHHHHHHHH
Q 041574 15 VPLYFAMLIAYGSVKWWRIF-TPQQCSGINRFVAVFAVPVL-------SFHFIAQNNPYQMDTKFILADTLSKVLVLVLL 86 (292)
Q Consensus 15 lPlfllIlLGyll~R~~~il-~~~~~~~LnklV~~vaLPaL-------IF~sl~~~~~~~l~~~~ila~~l~~li~~ll~ 86 (292)
-+++.-+++|++-+| .... +......+.++-+.+.+=+. .|.++.+ ..+++++.-.+..++..++.
T Consensus 28 G~L~vgL~~G~~~~~-~~~~~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~-----~G~~~~~~~~~i~~~~~~~~ 101 (169)
T PF06826_consen 28 GVLFVGLILGALGRT-GPIFLPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKR-----GGLKLLLLGVIITLVPLLIA 101 (169)
T ss_pred HHHHHHHHHHHhhhc-cCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHH
Confidence 578888888988877 5444 33333333333333322222 1112211 12333333333334444455
Q ss_pred HHHHH-HHhCCcchhhheeeeeeccchhhhHHHHHH-HhcCcch--hHHHHHHHHH
Q 041574 87 SVWAI-FFKGGLDWLITLFSVATLPNTLVMGIPLLS-AMYGEFT--QSLMVQLVVL 138 (292)
Q Consensus 87 ~L~~r-l~k~~~~~~~~l~~ls~f~NtgfmGiPLv~-alfGe~g--l~l~v~ivv~ 138 (292)
+.+.| ++|.+.......++ ....|+--+|...-. .=-+... +.|.+.+.+.
T Consensus 102 ~~~~~~~~~l~~~~~~G~~a-Ga~T~tp~L~~A~~~~~~~~~~~~~vgYa~~Yp~g 156 (169)
T PF06826_consen 102 LVIGRYLFKLNPGIAAGILA-GALTSTPALAAAQEAISDSGIPAIAVGYAVTYPFG 156 (169)
T ss_pred HHHHHHHcCCCHHHHHHHHH-ccccCcHHHHHHHHhhhcCCCchhhhhHHHHHHHH
Confidence 55565 77755543344444 666788766665544 2233444 4555544433
No 40
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=26.84 E-value=95 Score=25.93 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=20.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 041574 125 GEFTQSLMVQLVVLQCIIWYTLLLFLFEY 153 (292)
Q Consensus 125 Ge~gl~l~v~ivv~q~ii~~tl~l~lle~ 153 (292)
.+.+-..-+..+|+-.++||++|+.++-|
T Consensus 4 ~~~~~~a~Ia~mVlGFi~fWPlGla~Lay 32 (115)
T PF11014_consen 4 DPRWKPAWIAAMVLGFIVFWPLGLALLAY 32 (115)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445667788888899999888865
No 41
>PRK10711 hypothetical protein; Provisional
Probab=26.35 E-value=5.3e+02 Score=23.95 Aligned_cols=107 Identities=13% Similarity=0.025 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHh--hcCCCCCc--hhHHH-HHHHHHHHHHHHHHHHHHHHHhCCcchhhheeeeeeccchhhhH
Q 041574 42 INRFVAVFAVPVLSFHFI--AQNNPYQM--DTKFI-LADTLSKVLVLVLLSVWAIFFKGGLDWLITLFSVATLPNTLVMG 116 (292)
Q Consensus 42 LnklV~~vaLPaLIF~sl--~~~~~~~l--~~~~i-la~~l~~li~~ll~~L~~rl~k~~~~~~~~l~~ls~f~NtgfmG 116 (292)
=.+++.++.=|+.+--++ ++. .+.+ ++..+ ....++.++.....++++++++.+.+ ...++...+=|.=++
T Consensus 58 g~~~l~~lLgPAtVALAvPLY~q-~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~---~~~Sl~pkSVTtPIA 133 (231)
T PRK10711 58 GSEVLNDLLQPAVVALAFPLYEQ-LHQIRARWKSIISICFIGSVVAMVTGTAVALWMGATPE---IAASILPKSVTTPIA 133 (231)
T ss_pred ccHHHHhhhhHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH---HHHHHhhhhhhHHHH
Confidence 345555666676665554 222 1112 33333 33345555555566677788875544 233345556677899
Q ss_pred HHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041574 117 IPLLSAMYGEFTQSLMVQLVVLQCIIWYTLLLFLFEYR 154 (292)
Q Consensus 117 iPLv~alfGe~gl~l~v~ivv~q~ii~~tl~l~lle~~ 154 (292)
+++.+.+=|..++. +.+++..-++=..++-.+++.-
T Consensus 134 m~is~~iGG~~sLt--a~~ViitGi~Ga~~g~~llk~~ 169 (231)
T PRK10711 134 MAVGGSIGGIPAIS--AVCVIFVGILGAVFGHTLLNAM 169 (231)
T ss_pred HHHHHHhCCcHHHH--HHHHHHHHHHHHHHHHHHHHHc
Confidence 99999998988763 4456666666666666666543
No 42
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=26.15 E-value=2.5e+02 Score=27.39 Aligned_cols=108 Identities=15% Similarity=0.166 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcCCCChhhHhHHHHHHHHHHHHHHHHHHhhcCCCCCc-hhHHHHHHHHHH---HHH
Q 041574 7 FYKVMCAMVPLYFAMLIAYGSVKWWRIFTPQQCSGINRFVAVFAVPVLSFHFIAQNNPYQM-DTKFILADTLSK---VLV 82 (292)
Q Consensus 7 m~~vl~~IlPlfllIlLGyll~R~~~il~~~~~~~LnklV~~vaLPaLIF~sl~~~~~~~l-~~~~ila~~l~~---li~ 82 (292)
+..++..++|+.+=|++|-+=+.+++++.+ ...+.+|.+-|.-=++.|+... ...+-.. .++. ++.
T Consensus 168 ~~~lv~~llP~iiG~iLGNLD~~~r~fl~~---------~~~~lIPF~~f~lGa~inl~~i~~aGl~GI-lLgv~~~~vt 237 (314)
T PF03812_consen 168 WMSLVAALLPIIIGMILGNLDPDFRKFLAP---------GVPILIPFFGFALGAGINLSNIIKAGLSGI-LLGVIVVVVT 237 (314)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHhc---------CCCeeeehhhhhhcCCCCHHHHHHhCcchH-HHHHHHHHHH
Confidence 345667788887666666555543443333 2346778887776566665544 2222211 1221 122
Q ss_pred HHHHHHHHHHHhCCcchhhheeeeeeccchhhhHHHHHHHhcCcc
Q 041574 83 LVLLSVWAIFFKGGLDWLITLFSVATLPNTLVMGIPLLSAMYGEF 127 (292)
Q Consensus 83 ~ll~~L~~rl~k~~~~~~~~l~~ls~f~NtgfmGiPLv~alfGe~ 127 (292)
....++.-|+..++... +..-..++-+|. +..|-+.+..-++
T Consensus 238 g~~~~~~dr~i~~~~g~-aG~A~sstAGna--vatPaaiA~~dP~ 279 (314)
T PF03812_consen 238 GIPLYLADRLILKGNGV-AGAAISSTAGNA--VATPAAIAAADPS 279 (314)
T ss_pred hHHHHHHHHHHcCCCCc-eeehHHhhhhhh--hhhhHHHHHhChh
Confidence 22233344554322222 221112454665 5777777766554
No 43
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=25.43 E-value=2e+02 Score=27.75 Aligned_cols=23 Identities=22% Similarity=-0.022 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCc
Q 041574 45 FVAVFAVPVLSFHFIAQNNPYQM 67 (292)
Q Consensus 45 lV~~vaLPaLIF~sl~~~~~~~l 67 (292)
.+.-+.+|.-++.++++.++..+
T Consensus 261 v~s~if~pptliagiyGMNf~~m 283 (316)
T PRK11085 261 VVSVVFLPPTLVASSYGMNFEFM 283 (316)
T ss_pred HHHHHHHHHHHHHhhcccccCCC
Confidence 34457788888888888887644
No 44
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=25.34 E-value=4.9e+02 Score=23.21 Aligned_cols=82 Identities=13% Similarity=0.142 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhhheeeeeeccchhhhHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHH
Q 041574 69 TKFILADTLSKVLVLVLLSVWAIFFKGGLDWLITLFSVATLPNTLVMGIPLLSAMYGEFTQSLMVQLVVLQCIIWYTLLL 148 (292)
Q Consensus 69 ~~~ila~~l~~li~~ll~~L~~rl~k~~~~~~~~l~~ls~f~NtgfmGiPLv~alfGe~gl~l~v~ivv~q~ii~~tl~l 148 (292)
++.++......+..++..++..++++.+.++...+ + ++|+=+.+=| |++..++|.+-...+....+.--++-.-+.-
T Consensus 56 ~~~Llipl~tIlGSllgg~l~~~ll~~~~~~~lav-~-sG~GwYSlsg-~~i~~~~~~~~G~iafl~n~~RE~~a~~~~P 132 (191)
T PF03956_consen 56 KRALLIPLATILGSLLGGLLASLLLGLSLKESLAV-A-SGFGWYSLSG-VLITQLYGPELGTIAFLSNLFREILAIILIP 132 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH-H-ccCcHHHhHH-HHHHhhhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34333333333444445555666666555432222 2 4444443333 4666778887766665666665555545555
Q ss_pred HHHHh
Q 041574 149 FLFEY 153 (292)
Q Consensus 149 ~lle~ 153 (292)
++.++
T Consensus 133 ~~~r~ 137 (191)
T PF03956_consen 133 LLARY 137 (191)
T ss_pred HHHHh
Confidence 55543
No 45
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=24.96 E-value=4.8e+02 Score=24.98 Aligned_cols=133 Identities=14% Similarity=0.141 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhHhhcCCCChhhHhHHH---HHHHHHHHHHHHHHHhhcCCCCCc---hhHHHHHHHHHHHHHHHHHH
Q 041574 14 MVPLYFAMLIAYGSVKWWRIFTPQQCSGIN---RFVAVFAVPVLSFHFIAQNNPYQM---DTKFILADTLSKVLVLVLLS 87 (292)
Q Consensus 14 IlPlfllIlLGyll~R~~~il~~~~~~~Ln---klV~~vaLPaLIF~sl~~~~~~~l---~~~~ila~~l~~li~~ll~~ 87 (292)
+-++.+.+++|.+++.|..-.++...+++. |.+++++.=+|=++- ++.+. .+.-++...+...+.+.+.+
T Consensus 26 l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l----~~~~i~~~G~~~~~~~~~~v~~~~~~~~ 101 (305)
T PF03601_consen 26 LGALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRL----SFSDILALGWKGLLIIIIVVILTFLLTY 101 (305)
T ss_pred ccHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccc----cHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 345677788888887522223444444443 566666665553331 11111 22223333344444444444
Q ss_pred HHH-HHHhCCcchhhheeee--eeccchhhhHHHHHHHhcCcchhHHHHH-HHHHH--HHHHHHHHHHHHH
Q 041574 88 VWA-IFFKGGLDWLITLFSV--ATLPNTLVMGIPLLSAMYGEFTQSLMVQ-LVVLQ--CIIWYTLLLFLFE 152 (292)
Q Consensus 88 L~~-rl~k~~~~~~~~l~~l--s~f~NtgfmGiPLv~alfGe~gl~l~v~-ivv~q--~ii~~tl~l~lle 152 (292)
.+. |++|-+++. ..+.+. +.-+++..+..-=+... .++...+++. +.++. .++.||+..-.+.
T Consensus 102 ~lg~r~~~l~~~~-~~Lia~GtsICG~SAi~A~a~~i~a-~~~~~a~ava~V~lfg~vam~~~P~l~~~l~ 170 (305)
T PF03601_consen 102 WLGRRLFGLDRKL-AILIAAGTSICGASAIAATAPVIKA-KEEDVAYAVATVFLFGTVAMFLYPLLGHALG 170 (305)
T ss_pred HHHHHHhCCCHHH-HHHHHhhcccchHHHHHHHcccccC-CCCceeeeehHHHHHHHHHHHHHHHHHHHhC
Confidence 444 888866554 444442 55566665554333322 2333433332 22222 3344555544443
No 46
>PF10215 Ost4: Oligosaccaryltransferase ; InterPro: IPR018943 Ost4 is a very short, approximately 30 residues, enzyme found from fungi to vertebrates. It is a member of the ER oligosaccaryltansferase complex, 2.4.1.119 from EC, that catalyses the asparagine-linked glycosylation of proteins. It appears to be an integral membrane protein that mediates the en bloc transfer of a pre-assembled high-mannose oligosaccharide onto asparagine residues of nascent polypeptides as they enter the lumen of the rough endoplasmic reticulum. ; PDB: 1RKL_A 2LAT_A.
Probab=24.94 E-value=1.4e+02 Score=19.75 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=13.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHH
Q 041574 1 MITGNDFYKVMCAMVPLYFAMLIAY 25 (292)
Q Consensus 1 mi~~~dm~~vl~~IlPlfllIlLGy 25 (292)
|||..+++.+.+.+-....+..+.|
T Consensus 1 MIsD~qL~~lan~lG~~~~~LIVlY 25 (35)
T PF10215_consen 1 MISDVQLYTLANFLGVAAMVLIVLY 25 (35)
T ss_dssp --SSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888865554444444444444
No 47
>PF12971 NAGLU_N: Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain; InterPro: IPR024240 Alpha-N-acetylglucosaminidase, is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B) characterised by neurological dysfunction but relatively mild somatic manifestations []. The structure shows that the enzyme is composed of three domains. This entry represents the N-terminal domain of Alpha-N-acetylglucosaminidase which has an alpha-beta fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=24.71 E-value=55 Score=25.35 Aligned_cols=44 Identities=34% Similarity=0.490 Sum_probs=25.6
Q ss_pred hhcccchhccCCCccccceeeeeeCCcccccCCCCcccccccccCCCceEE
Q 041574 154 RAATVLIQTQFPGPAAASIAKFELDNDVISLDGRDPLKTESETDGNGRIRV 204 (292)
Q Consensus 154 ~~ak~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (292)
..++.++++++|+ -+.. -.|++.++- +|.|-.+.++ +++|||.+
T Consensus 3 ~a~~~li~Rll~~-~~~~-f~~~~~~~~---~~~d~F~l~~--~~~gki~I 46 (86)
T PF12971_consen 3 SAARGLIERLLPE-HASQ-FTFELIPSS---NGKDVFELSS--ADNGKIVI 46 (86)
T ss_dssp HHHHHHHHHHC-G-GGGG-EEEEE---B---TTBEEEEEEE---SSS-EEE
T ss_pred HHHHHHHHhhccc-ccce-EEEEEecCC---CCCCEEEEEe--CCCCeEEE
Confidence 3457788899998 6666 677777753 3666554444 68899777
No 48
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=23.53 E-value=7.2e+02 Score=24.53 Aligned_cols=102 Identities=14% Similarity=0.220 Sum_probs=63.7
Q ss_pred cCCCChhhHhHHHHHH-----HHHHHHHHHHHHhhcCCCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhhh
Q 041574 31 WRIFTPQQCSGINRFV-----AVFAVPVLSFHFIAQNNPYQM---DTKFILADTLSKVLVLVLLSVWAIFFKGGLDWLIT 102 (292)
Q Consensus 31 ~~il~~~~~~~LnklV-----~~vaLPaLIF~sl~~~~~~~l---~~~~ila~~l~~li~~ll~~L~~rl~k~~~~~~~~ 102 (292)
.++++++..+.++.|. .|+..-||+--++...|.+.+ ..+++...+++.+..+++..+...+++.+..+...
T Consensus 6 ~~~~p~~~~~~~~~fm~~~~Fl~fyIa~LI~GSIL~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~~~~~ 85 (347)
T TIGR00783 6 YNILPQNVIDATSNFMKGSNFLYLYIACLIVGSILGMNRKLLLKALMRFIPPALIGMVLAVIVGILVGTLFGLGFDHSLM 85 (347)
T ss_pred eCCCCHHHHHHHHHHHccCChHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHhhh
Confidence 6889998888888754 467888999999988887665 34666666566555555666666777655543122
Q ss_pred eeee---eeccchhhhHHHHHHH-hcCcchhHHH
Q 041574 103 LFSV---ATLPNTLVMGIPLLSA-MYGEFTQSLM 132 (292)
Q Consensus 103 l~~l---s~f~NtgfmGiPLv~a-lfGe~gl~l~ 132 (292)
...+ +.--+-|-+.+....+ +.|.+.-.+.
T Consensus 86 ~i~lPIm~GG~GaGavPLS~~Y~~~~g~~~~~~~ 119 (347)
T TIGR00783 86 YIVMPIMAGGVGAGIVPLSIIYSAITGRSSEEIF 119 (347)
T ss_pred eeeehhcCCCcccchhhHHHHHHHHhCCCHHHHH
Confidence 2222 2323355555555554 5566655443
No 49
>PRK11281 hypothetical protein; Provisional
Probab=22.26 E-value=6.9e+02 Score=28.60 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC
Q 041574 44 RFVAVFAVPVLSFHFIAQNNPY 65 (292)
Q Consensus 44 klV~~vaLPaLIF~sl~~~~~~ 65 (292)
+....+.+|++....+......
T Consensus 624 ~~~~~~~~pl~~~~~~~~~~~~ 645 (1113)
T PRK11281 624 VRLSLALLPLLFWSVVAELSPL 645 (1113)
T ss_pred HHHHHHHHHHHHHHHHHhhCch
Confidence 3445677788877766654433
No 50
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=21.46 E-value=4.1e+02 Score=27.66 Aligned_cols=30 Identities=7% Similarity=0.088 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCc--hhHHH
Q 041574 43 NRFVAVFAVPVLSFHFIAQNNPYQM--DTKFI 72 (292)
Q Consensus 43 nklV~~vaLPaLIF~sl~~~~~~~l--~~~~i 72 (292)
..+.+.+++|.++|.+=.+.+.... +++.+
T Consensus 65 ~~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~I 96 (559)
T TIGR00840 65 SSYFFLYLLPPIVLDAGYFMPQRNFFENLGSI 96 (559)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3567789999999998888876665 44434
No 51
>PRK05326 potassium/proton antiporter; Reviewed
Probab=21.16 E-value=9e+02 Score=24.77 Aligned_cols=48 Identities=10% Similarity=-0.140 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhHhhcCCCChhhHhHHHHHHHHHHHHHHHHHHhhcCCCC
Q 041574 17 LYFAMLIAYGSVKWWRIFTPQQCSGINRFVAVFAVPVLSFHFIAQNNPY 65 (292)
Q Consensus 17 lfllIlLGyll~R~~~il~~~~~~~LnklV~~vaLPaLIF~sl~~~~~~ 65 (292)
++...+.|..... .+.-..+..+.....+.+++.|.+.+..=...++.
T Consensus 247 ~la~~iaGl~l~n-~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~ 294 (562)
T PRK05326 247 FLAVYLAGLVLGN-RPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPS 294 (562)
T ss_pred HHHHHHHHHHHhC-CcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3445567777765 44444445566666667777776443322333443
No 52
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=21.11 E-value=3e+02 Score=29.90 Aligned_cols=114 Identities=12% Similarity=0.117 Sum_probs=62.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhcCCCCCc-hhHHHHHHHH-HHHHHHHHHHHHHHHHhCCcchhhheeeeeeccchhh
Q 041574 37 QQCSGINRFVAVFAVPVLSFHFIAQNNPYQM-DTKFILADTL-SKVLVLVLLSVWAIFFKGGLDWLITLFSVATLPNTLV 114 (292)
Q Consensus 37 ~~~~~LnklV~~vaLPaLIF~sl~~~~~~~l-~~~~ila~~l-~~li~~ll~~L~~rl~k~~~~~~~~l~~ls~f~Ntgf 114 (292)
.-.+.+..++..+.+|+-+..+-.+.+...+ .+........ ....-++.....+.++|-..++ +...+ ..+.+=|.
T Consensus 302 ~L~ekle~~~~~~llPl~~~~~G~k~di~~i~~~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~-~l~l~-~lm~~kgl 379 (769)
T KOG1650|consen 302 ALIEKLEDLVSGLLLPLYFAISGLKTDISRINKWGALIRTILIFGAVKLLSTLGTSLYCKLPLRD-SLALG-LLMSTKGL 379 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH-HHHHH-HHHHhhhH
Confidence 5577789999999999998888777776544 2222222111 1122222223334556633332 12221 33344555
Q ss_pred hHHHHHHHh-----cCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 041574 115 MGIPLLSAM-----YGEFTQSLMVQLVVLQCIIWYTLLLFLFE 152 (292)
Q Consensus 115 mGiPLv~al-----fGe~gl~l~v~ivv~q~ii~~tl~l~lle 152 (292)
+.+=+.... ..+++...++.+..++..+..++...++.
T Consensus 380 ~el~~~~~~~~~~~~~~~~f~~~vl~alv~t~I~~~~l~~~y~ 422 (769)
T KOG1650|consen 380 VELIVLNTGLDRKILSDEGFTVMVLMALVSTFITPPLLMFLYD 422 (769)
T ss_pred HHHHHHHHHhhcCCcccchHHHHHHHHHHHHhhHHHHHHHhcc
Confidence 555444443 45666666666777777777677666664
No 53
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=20.90 E-value=9.5e+02 Score=24.95 Aligned_cols=117 Identities=12% Similarity=0.125 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHhHhhcCC---CChhhHhHHHHHHHHHHHHHH-------HHHHhhcCCCCCchhHHHHHHHHHHHHHH
Q 041574 14 MVPLYFAMLIAYGSVKWWRI---FTPQQCSGINRFVAVFAVPVL-------SFHFIAQNNPYQMDTKFILADTLSKVLVL 83 (292)
Q Consensus 14 IlPlfllIlLGyll~R~~~i---l~~~~~~~LnklV~~vaLPaL-------IF~sl~~~~~~~l~~~~ila~~l~~li~~ 83 (292)
.-+++.-+++|++-++ ... +++.....+..+=+.+.+=+. .|.++.+ ..+.+++.-.+..++..
T Consensus 419 ~g~l~~gl~~g~~~~~-~~~~~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~-----~G~~~~~~g~~~~~~~~ 492 (562)
T TIGR03802 419 GGALISGLVFGWLRSK-HPTFGNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKE-----MGLTLFLLGIVVTILPL 492 (562)
T ss_pred HHHHHHHHHHHHhccc-CCcceecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHH-----hhHHHHHHHHHHHHHHH
Confidence 3566677777776544 222 455443334443333333222 1222211 12333322222223333
Q ss_pred HHHHHHH-HHHhCCcchhhheeeeeeccchhhhHHHHHHHhcCcc--hhHHHHHHHHHH
Q 041574 84 VLLSVWA-IFFKGGLDWLITLFSVATLPNTLVMGIPLLSAMYGEF--TQSLMVQLVVLQ 139 (292)
Q Consensus 84 ll~~L~~-rl~k~~~~~~~~l~~ls~f~NtgfmGiPLv~alfGe~--gl~l~v~ivv~q 139 (292)
++.+++. +++|-+.......++ ....|+.-++...-. -+++ .+.|++.|-+.+
T Consensus 493 ~~~~~~~~~~~~~~~~~~~G~~a-G~~t~t~~l~~a~~~--~~~~~~~~gYa~~Yp~~~ 548 (562)
T TIGR03802 493 IITMLIGKYVLKYDPALLLGALA-GARTATPALGAVLER--AGSSVPALGYTITYALGN 548 (562)
T ss_pred HHHHHHHHHHhCCCHHHHHHHhh-ccCCCcHHHHHHHHh--cCCCCcccchHhHHHHHH
Confidence 3444444 677755533234443 666788776665432 2443 345555444443
Done!