Query 041574
Match_columns 292
No_of_seqs 251 out of 1305
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 14:25:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041574.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041574hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 95.6 0.17 5.7E-06 47.3 13.0 64 78-142 237-302 (332)
2 4ev6_A Magnesium transport pro 31.6 2.8E+02 0.0095 25.0 9.9 28 39-67 279-306 (339)
3 2iub_A CORA, divalent cation t 31.0 1.2E+02 0.0041 27.8 7.4 29 38-67 302-330 (363)
4 2lat_A Dolichyl-diphosphooligo 30.8 67 0.0023 20.6 3.8 25 1-25 1-25 (37)
5 3if4_A Integron cassette prote 28.0 19 0.00065 28.5 1.1 18 189-206 25-42 (119)
6 1wia_A Hypothetical ubiquitin- 19.5 90 0.0031 22.7 3.4 24 190-213 60-83 (95)
7 1rkl_A Dolichyl-diphosphooligo 18.5 87 0.003 20.0 2.6 25 1-25 1-25 (36)
8 3h0x_A 78 kDa glucose-regulate 18.1 97 0.0033 25.1 3.5 39 171-209 64-102 (152)
9 1waz_A MERF; protein structure 17.3 46 0.0016 22.4 1.1 20 16-35 2-21 (46)
10 1q5l_A Chaperone protein DNAK; 16.8 1.2E+02 0.0042 24.0 3.8 39 171-209 81-119 (135)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=95.57 E-value=0.17 Score=47.33 Aligned_cols=64 Identities=14% Similarity=-0.034 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHhCCcchhhheeeeeeccchhhhHHHHHHHhcCcchh--HHHHHHHHHHHHH
Q 041574 78 SKVLVLVLLSVWAIFFKGGLDWLITLFSVATLPNTLVMGIPLLSAMYGEFTQ--SLMVQLVVLQCII 142 (292)
Q Consensus 78 ~~li~~ll~~L~~rl~k~~~~~~~~l~~ls~f~NtgfmGiPLv~alfGe~gl--~l~v~ivv~q~ii 142 (292)
..++.+++.+..+|++|.+.+...++..-++-.|+ -+|+|++...||+... ...+.+.+.|.+.
T Consensus 237 ~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs-~lai~lA~~~F~~~p~~alp~~iy~~~q~i~ 302 (332)
T 3zux_A 237 HNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNS-GLAAALAAAHFAAAPVVAVPGALFSVWHNIS 302 (332)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCH-HHHHHHHHHHSTTCGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 33455556677778877555332332211566787 5999999999964332 2223344444443
No 2
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=31.57 E-value=2.8e+02 Score=25.01 Aligned_cols=28 Identities=11% Similarity=-0.097 Sum_probs=19.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 041574 39 CSGINRFVAVFAVPVLSFHFIAQNNPYQM 67 (292)
Q Consensus 39 ~~~LnklV~~vaLPaLIF~sl~~~~~~~l 67 (292)
.+.|+ .+.-+++|.-++.++++.++..+
T Consensus 279 mk~LT-iit~IflP~T~IaGiyGMNf~~m 306 (339)
T 4ev6_A 279 MKILT-MVTTIFAVPMWITGIYGMNFSYL 306 (339)
T ss_dssp HHHHH-HHHHHSSHHHHHHHHTTCCCSCC
T ss_pred HHHHH-HHHHHHHHHHHHHhhccCcCCCC
Confidence 33443 33447789999999999887643
No 3
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=30.98 E-value=1.2e+02 Score=27.85 Aligned_cols=29 Identities=17% Similarity=0.001 Sum_probs=15.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 041574 38 QCSGINRFVAVFAVPVLSFHFIAQNNPYQM 67 (292)
Q Consensus 38 ~~~~LnklV~~vaLPaLIF~sl~~~~~~~l 67 (292)
..+.|+- +.-+++|.-++.++++.++..+
T Consensus 302 imk~LTi-it~IflP~T~IaGiyGMNf~~m 330 (363)
T 2iub_A 302 VMKVLTI-IATIFMPLTFIAGIYGMNFEYM 330 (363)
T ss_dssp HHHHHHH-HHHHHHHHHHHTTSCC------
T ss_pred HHHHHHH-HHHHHHHHHHHHhhhcccCCCC
Confidence 4444443 4447788888889988887644
No 4
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=30.81 E-value=67 Score=20.65 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=15.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHH
Q 041574 1 MITGNDFYKVMCAMVPLYFAMLIAY 25 (292)
Q Consensus 1 mi~~~dm~~vl~~IlPlfllIlLGy 25 (292)
|||-.+++.+.+.+-....++.+.|
T Consensus 1 MIsD~qL~~lan~lG~~~~~LIVlY 25 (37)
T 2lat_A 1 MITDVQLAIFANMLGVSLFLLVVLY 25 (37)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999998866555544444444444
No 5
>3if4_A Integron cassette protein HFX_CASS5; integron cassette protein mobIle metagenome structural genomics PSI-2 protein structure initiative midwest center for structural genomics; HET: MSE; 2.18A {Unidentified}
Probab=27.96 E-value=19 Score=28.47 Aligned_cols=18 Identities=39% Similarity=0.554 Sum_probs=15.4
Q ss_pred cccccccccCCCceEEEE
Q 041574 189 PLKTESETDGNGRIRVRI 206 (292)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~ 206 (292)
++-+.-|++++|||||+-
T Consensus 25 e~ia~IEvd~~Grihv~p 42 (119)
T 3if4_A 25 EFVAAIEIDGTGRIHVTP 42 (119)
T ss_dssp EEEEEEEECTTSCEEEEE
T ss_pred HHHHHeeeccCCcEEEee
Confidence 456678999999999987
No 6
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=19.54 E-value=90 Score=22.66 Aligned_cols=24 Identities=8% Similarity=0.003 Sum_probs=17.4
Q ss_pred ccccccccCCCceEEEEeccCCCC
Q 041574 190 LKTESETDGNGRIRVRIRRSTSSA 213 (292)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~ 213 (292)
...|..+.++-.||+++|+..+..
T Consensus 60 tL~~y~i~~g~~i~l~~~~~~~~~ 83 (95)
T 1wia_A 60 TLSSLNITNNCVIHCHRSPPGAAV 83 (95)
T ss_dssp BTTTTTCCTTEEEEEECCCCCCCC
T ss_pred CHHHcCCCCCCEEEEEECCCCCCC
Confidence 344677888889999998765443
No 7
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=18.48 E-value=87 Score=19.99 Aligned_cols=25 Identities=12% Similarity=0.377 Sum_probs=14.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHH
Q 041574 1 MITGNDFYKVMCAMVPLYFAMLIAY 25 (292)
Q Consensus 1 mi~~~dm~~vl~~IlPlfllIlLGy 25 (292)
|||..+++.+.+.+-....++.+.|
T Consensus 1 MIsD~qL~~lan~lG~~~~~LIvlY 25 (36)
T 1rkl_A 1 MISDEQLNSLAITFGIVMMTLIVIY 25 (36)
T ss_dssp CCSSCGGGHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888765544444333333444
No 8
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Probab=18.05 E-value=97 Score=25.12 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=26.0
Q ss_pred ceeeeeeCCcccccCCCCcccccccccCCCceEEEEecc
Q 041574 171 SIAKFELDNDVISLDGRDPLKTESETDGNGRIRVRIRRS 209 (292)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (292)
.|.+|+++.=--.-.|...++..-+++.||-|+|..+--
T Consensus 64 ~LG~f~l~gipp~p~G~~~I~Vtf~iD~nGiL~V~a~d~ 102 (152)
T 3h0x_A 64 LLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSATDK 102 (152)
T ss_dssp EEEEEEECCCCCCCTTCSCEEEEEEECTTSEEEEEEEET
T ss_pred EEEEEEEeCCCCCCCCCceEEEEEEEcCCCEEEEEEEEc
Confidence 467777763211123444477788899999999998753
No 9
>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii}
Probab=17.31 E-value=46 Score=22.39 Aligned_cols=20 Identities=15% Similarity=0.155 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhHhhcCCCC
Q 041574 16 PLYFAMLIAYGSVKWWRIFT 35 (292)
Q Consensus 16 PlfllIlLGyll~R~~~il~ 35 (292)
|++++++-+..+.-|.|++|
T Consensus 2 PvLViL~g~vGLsa~vgyLD 21 (46)
T 1waz_A 2 PVLVILLGVVGLSALTGYLD 21 (46)
T ss_dssp HHHHHHHHHHHHHHCCSCCC
T ss_pred ceeehhHHHhhHHHHHHHHH
Confidence 45555555555555556665
No 10
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1
Probab=16.82 E-value=1.2e+02 Score=23.97 Aligned_cols=39 Identities=21% Similarity=0.352 Sum_probs=24.6
Q ss_pred ceeeeeeCCcccccCCCCcccccccccCCCceEEEEecc
Q 041574 171 SIAKFELDNDVISLDGRDPLKTESETDGNGRIRVRIRRS 209 (292)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (292)
.+.+|+++.---.-.|...++..-+++.||-|+|..+--
T Consensus 81 ~Lg~f~l~gipp~p~G~~~IeVtf~iD~nGiL~V~a~d~ 119 (135)
T 1q5l_A 81 SLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDK 119 (135)
T ss_dssp EEEEEECCCCCSCCSSSCCEEEEEEECTTSEEEEEEEET
T ss_pred EEEEEEEeCCCCCCCceeEEEEEEEECCCCEEEEEEEEC
Confidence 355666543111113444577888899999999998743
Done!