Query 041574
Match_columns 292
No_of_seqs 251 out of 1305
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 14:25:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041574.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041574hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u00a2 b.130.1.1 (A:389-503) 45.0 11 0.00077 27.9 4.1 41 171-211 62-102 (115)
2 d1dkza2 b.130.1.1 (A:389-506) 35.8 20 0.0015 26.4 4.5 41 171-211 65-105 (118)
3 d1n7ea_ b.36.1.1 (A:) Glutamat 20.8 11 0.00079 26.5 0.3 58 157-214 29-92 (95)
4 d1i16a_ b.36.1.2 (A:) Interleu 19.8 44 0.0032 24.3 3.7 55 157-211 58-119 (130)
5 d1uepa_ b.36.1.1 (A:) Membrane 18.5 7.5 0.00055 27.8 -1.1 58 157-214 35-100 (103)
6 d2iuba2 f.17.3.1 (A:286-349) M 18.1 42 0.003 21.6 2.9 21 45-65 11-31 (64)
7 d1whaa_ b.36.1.1 (A:) Scribble 17.4 34 0.0025 24.1 2.5 57 157-213 39-101 (105)
8 d1pv7a_ f.38.1.2 (A:) Lactose 16.5 2.2E+02 0.016 21.8 8.8 12 18-29 274-285 (417)
9 d1vb7a_ b.36.1.1 (A:) PDZ-LIM 15.0 26 0.0019 24.3 1.2 53 158-211 32-90 (94)
10 d2e74f1 f.23.25.1 (F:1-32) Pet 14.5 96 0.007 17.4 3.4 20 10-29 5-24 (32)
No 1
>d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}
Probab=44.96 E-value=11 Score=27.88 Aligned_cols=41 Identities=20% Similarity=0.304 Sum_probs=29.8
Q ss_pred ceeeeeeCCcccccCCCCcccccccccCCCceEEEEeccCC
Q 041574 171 SIAKFELDNDVISLDGRDPLKTESETDGNGRIRVRIRRSTS 211 (292)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (292)
-+..|+++.--=.-.|..+++..-++++||.|||+.+--.+
T Consensus 62 ~lg~~~l~~ip~~p~G~~~I~Vtf~id~nGiL~V~A~d~~t 102 (115)
T d1u00a2 62 SLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKST 102 (115)
T ss_dssp EEEEEEECCCCCCSTTCSCEEEEEEECTTCCEEEEEEETTT
T ss_pred EeeEEEEeCcccCccccccEEEEEEccCCceEEEEEEECCC
Confidence 35666666433344667778888999999999999986543
No 2
>d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]}
Probab=35.84 E-value=20 Score=26.37 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=30.3
Q ss_pred ceeeeeeCCcccccCCCCcccccccccCCCceEEEEeccCC
Q 041574 171 SIAKFELDNDVISLDGRDPLKTESETDGNGRIRVRIRRSTS 211 (292)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (292)
.+..|+++..--.-.|...++..-++++||.|+|+.+--.+
T Consensus 65 ~lg~~~i~~ip~~p~G~~~I~Vtf~iD~nGiL~V~a~d~~t 105 (118)
T d1dkza2 65 SLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNS 105 (118)
T ss_dssp EEEEEEEECCCSCCTTCSCEEEEEEECTTCCEEEEEEETTT
T ss_pred EEEEEEEcCCccCCCCCcEEEEEEEecCCCeEEEEEEECCC
Confidence 46777776544444566668888999999999999975543
No 3
>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.80 E-value=11 Score=26.50 Aligned_cols=58 Identities=10% Similarity=0.275 Sum_probs=39.4
Q ss_pred ccchhccCCCccccceeeeeeCCcccccCCCCcc-----cccccc-cCCCceEEEEeccCCCCC
Q 041574 157 TVLIQTQFPGPAAASIAKFELDNDVISLDGRDPL-----KTESET-DGNGRIRVRIRRSTSSAP 214 (292)
Q Consensus 157 k~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~ 214 (292)
...|+++.|+..|..-..+++.+-+++.||.+-. ++..-+ ...++++++|+|...+++
T Consensus 29 ~v~I~~I~~g~~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~l~v~r~~~~~p 92 (95)
T d1n7ea_ 29 PIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQP 92 (95)
T ss_dssp CCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEECCCCCCC
T ss_pred CEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCCCcC
Confidence 3578888898555554569999999999995411 112223 236789999999875543
No 4
>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.78 E-value=44 Score=24.29 Aligned_cols=55 Identities=20% Similarity=0.355 Sum_probs=38.2
Q ss_pred ccchhccCCCccccceeeeeeCCcccccCCCCccc-cc----cccc--CCCceEEEEeccCC
Q 041574 157 TVLIQTQFPGPAAASIAKFELDNDVISLDGRDPLK-TE----SETD--GNGRIRVRIRRSTS 211 (292)
Q Consensus 157 k~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~--~~~~~~~~~~~~~~ 211 (292)
.+.|+++.|+..|..-..+++.+-++..||..-.. +. .-+. .+|.+.++|+|...
T Consensus 58 ~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~~~~~t~~eav~~l~~~~~~~v~l~v~r~~~ 119 (130)
T d1i16a_ 58 PLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSL 119 (130)
T ss_dssp CCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEESS
T ss_pred CEEEEEECCCChHHhcCCcccCceeeeECCeecCCCcHHHHHHHHHcCCCCeEEEEEEcCCC
Confidence 46789999995555445689999999999976111 11 1232 47889999998763
No 5
>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.53 E-value=7.5 Score=27.82 Aligned_cols=58 Identities=19% Similarity=0.300 Sum_probs=38.1
Q ss_pred ccchhccCCCccccceeeeeeCCcccccCCCCc--c---ccccc---ccCCCceEEEEeccCCCCC
Q 041574 157 TVLIQTQFPGPAAASIAKFELDNDVISLDGRDP--L---KTESE---TDGNGRIRVRIRRSTSSAP 214 (292)
Q Consensus 157 k~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~---~~~~~~~~~~~~~~~~~~~ 214 (292)
...|+++.|+..|+.-..+++-+-+++.||..- + ++... ...+++++++|+|...+.+
T Consensus 35 ~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~l~~~~~~~~v~l~v~r~~~s~P 100 (103)
T d1uepa_ 35 PILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKVLSGP 100 (103)
T ss_dssp CCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred cEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEEeCCCCCC
Confidence 356888999855554456888888999888541 1 11111 2346789999998765543
No 6
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=18.13 E-value=42 Score=21.64 Aligned_cols=21 Identities=19% Similarity=0.050 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCC
Q 041574 45 FVAVFAVPVLSFHFIAQNNPY 65 (292)
Q Consensus 45 lV~~vaLPaLIF~sl~~~~~~ 65 (292)
.+.-+.+|.-.+.++.+.+..
T Consensus 11 ~it~iflP~t~i~gifGMN~~ 31 (64)
T d2iuba2 11 IIATIFMPLTFIAGIYGMNFE 31 (64)
T ss_dssp HHHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHHHHHhhhccCCC
Confidence 345578888888888777654
No 7
>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.41 E-value=34 Score=24.08 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=37.6
Q ss_pred ccchhccCCCccccceeeeeeCCcccccCCCCcc-----ccccccc-CCCceEEEEeccCCCC
Q 041574 157 TVLIQTQFPGPAAASIAKFELDNDVISLDGRDPL-----KTESETD-GNGRIRVRIRRSTSSA 213 (292)
Q Consensus 157 k~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~ 213 (292)
.+.|+++.|+..|+.-..+++-+-+++.||..-. ++..-+. ..++++++|+|...+.
T Consensus 39 gi~V~~v~~gs~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~l~v~R~~~~~ 101 (105)
T d1whaa_ 39 GIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREAGSG 101 (105)
T ss_dssp SCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSCCSCEEEEEEECCCCC
T ss_pred CEEEEEEcCCCchhhcCCccCCCEEEEECCEEcCCCcHHHHHHHHHcCCCeEEEEEEECCCCc
Confidence 3568999998545444469999999999996511 1112233 3457999999876543
No 8
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=16.50 E-value=2.2e+02 Score=21.76 Aligned_cols=12 Identities=0% Similarity=-0.117 Sum_probs=5.2
Q ss_pred HHHHHHHHHhHh
Q 041574 18 YFAMLIAYGSVK 29 (292)
Q Consensus 18 fllIlLGyll~R 29 (292)
......|++.+|
T Consensus 274 ~~~~~~~~l~~r 285 (417)
T d1pv7a_ 274 SIMFFAPLIINR 285 (417)
T ss_dssp HHHTTHHHHHHH
T ss_pred cchhhhhhhhcc
Confidence 333344444444
No 9
>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.02 E-value=26 Score=24.34 Aligned_cols=53 Identities=15% Similarity=0.352 Sum_probs=35.9
Q ss_pred cchhccCCCccccceeeeeeCCcccccCCCCccc---cc--ccc-cCCCceEEEEeccCC
Q 041574 158 VLIQTQFPGPAAASIAKFELDNDVISLDGRDPLK---TE--SET-DGNGRIRVRIRRSTS 211 (292)
Q Consensus 158 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~-~~~~~~~~~~~~~~~ 211 (292)
+.+.+..|+..|.. ..+++.+-+++.||..-.. .| ..+ ...++++++|+|...
T Consensus 32 i~V~~v~~gs~A~~-~gL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~V~R~~~ 90 (94)
T d1vb7a_ 32 IIVTKVTERGKAEA-ADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRSSG 90 (94)
T ss_dssp EECCCBCTTSSHHH-HTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEECCCC
T ss_pred EEEEeccCCChhhh-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence 56888889855554 7799999999999854111 12 122 234789999998653
No 10
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=14.45 E-value=96 Score=17.44 Aligned_cols=20 Identities=10% Similarity=0.225 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHhHh
Q 041574 10 VMCAMVPLYFAMLIAYGSVK 29 (292)
Q Consensus 10 vl~~IlPlfllIlLGyll~R 29 (292)
++++-+--|.+|++||.++-
T Consensus 5 il~aa~lsfglifvgwglga 24 (32)
T d2e74f1 5 MLYAALLSFGLIFVGWGLGV 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhHHHH
Confidence 44555566788888887754
Done!