Query 041575
Match_columns 263
No_of_seqs 200 out of 1158
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 14:26:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041575.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041575hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3swz_A Steroid 17-alpha-hydrox 100.0 1.2E-31 4.2E-36 221.0 23.6 251 1-262 18-278 (494)
2 3pm0_A Cypib1, cytochrome P450 100.0 2.8E-30 9.6E-35 213.5 21.6 251 1-262 19-284 (507)
3 3czh_A Cytochrome P450 2R1; vi 100.0 1E-29 3.6E-34 208.7 21.9 248 1-262 22-278 (481)
4 2fdv_A Cytochrome P450 2A6; CY 100.0 1.3E-29 4.5E-34 207.9 22.4 246 1-262 20-273 (476)
5 2hi4_A Cytochrome P450 1A2; CY 100.0 7.2E-30 2.5E-34 210.4 20.2 250 1-262 26-287 (495)
6 3e6i_A CYPIIE1, P450-J, cytoch 100.0 3.3E-29 1.1E-33 205.6 23.7 245 1-262 20-272 (476)
7 1po5_A Cytochrome P450 2B4; ox 100.0 4.9E-29 1.7E-33 204.5 21.3 246 1-262 20-273 (476)
8 3gw9_A Sterol 14alpha-demethyl 100.0 1.2E-29 4.2E-34 206.7 17.5 242 1-262 14-258 (450)
9 3qz1_A Steroid 21-hydroxylase; 100.0 3E-30 1E-34 212.8 12.8 236 12-262 43-284 (496)
10 1r9o_A Cytochrome P450 2C9; mo 100.0 7.9E-29 2.7E-33 203.4 20.4 246 1-262 21-274 (477)
11 3ld6_A Lanosterol 14-alpha dem 100.0 1.4E-29 4.8E-34 206.9 15.5 235 1-262 22-257 (461)
12 3k9v_A 1,25-dihydroxyvitamin D 100.0 8.3E-28 2.8E-32 197.6 24.1 241 1-262 34-288 (482)
13 2ij2_A Cytochrome P450 BM3; mo 100.0 3.1E-27 1E-31 193.5 25.8 242 1-262 13-258 (470)
14 3nxu_A Cytochrome P450 3A4; al 100.0 1.7E-29 5.8E-34 207.8 11.9 244 1-262 24-277 (485)
15 3n9y_A Cholesterol SIDE-chain 100.0 2.9E-27 9.8E-32 194.6 23.0 239 12-262 32-280 (487)
16 3mdm_A Cholesterol 24-hydroxyl 100.0 1.2E-26 4.1E-31 189.4 25.0 232 12-262 10-248 (456)
17 3s79_A Cytochrome P450 19A1; o 100.0 5.1E-27 1.7E-31 193.9 20.7 241 1-262 55-300 (503)
18 3tbg_A Cytochrome P450 2D6; mo 100.0 3.4E-26 1.2E-30 187.8 24.4 249 1-262 20-277 (479)
19 2cib_A Cytochrome P450 51; hem 99.9 2.3E-26 7.9E-31 187.6 18.6 235 1-262 15-250 (455)
20 3i3k_A Lanosterol 14-alpha dem 99.9 2.2E-26 7.7E-31 188.0 15.8 234 1-262 22-257 (461)
21 2ve3_A Putative cytochrome P45 99.9 8.7E-26 3E-30 183.6 18.9 227 1-262 22-248 (444)
22 3dbg_A Putative cytochrome P45 99.9 3.3E-27 1.1E-31 193.2 9.9 232 1-262 33-268 (467)
23 1izo_A P450bsbeta, cytochrome 99.9 1.3E-23 4.5E-28 169.5 23.0 223 1-261 10-236 (417)
24 3awm_A Fatty acid alpha-hydrox 99.9 3E-23 1E-27 167.3 22.1 223 1-261 9-235 (415)
25 2cd8_A Cytochrome P450 monooxy 99.9 1.6E-23 5.5E-28 169.7 17.5 215 2-262 37-257 (436)
26 1n97_A CYP175A1; electron tran 99.9 3.7E-24 1.3E-28 171.1 12.1 191 1-218 9-200 (389)
27 3oo3_A OXY protein; cytochrome 99.9 1.4E-22 4.7E-27 161.8 21.1 205 12-262 12-220 (384)
28 1cpt_A Cytochrome P450-TERP; o 99.9 5.8E-23 2E-27 166.2 19.0 221 13-262 26-261 (428)
29 2wm5_A CYP124, putative cytoch 99.9 2.5E-22 8.4E-27 162.6 20.9 213 13-262 45-268 (435)
30 3v8d_A Cholesterol 7-alpha-mon 99.9 1.4E-23 4.6E-28 172.9 12.6 235 1-262 24-262 (491)
31 3tkt_A Cytochrome P450; aromat 99.9 1.5E-22 5E-27 164.7 16.5 219 14-262 47-283 (450)
32 3ejb_B Biotin biosynthesis cyt 99.9 1.8E-21 6.3E-26 156.3 22.7 208 12-262 13-228 (404)
33 3a4g_A Vitamin D hydroxylase; 99.9 6.9E-22 2.4E-26 158.9 19.9 205 12-262 20-230 (411)
34 4fb2_A P450CIN; heme, monooxyg 99.9 4.5E-22 1.5E-26 159.5 18.4 205 12-262 19-226 (398)
35 3tyw_A Putative cytochrome P45 99.9 1.3E-21 4.6E-26 157.7 21.0 206 12-262 29-243 (417)
36 2y5n_A MYCG, P-450-like protei 99.9 7.2E-22 2.5E-26 159.1 19.0 207 12-262 37-248 (417)
37 2xkr_A CYP142, putative cytoch 99.9 1.3E-21 4.3E-26 156.9 19.6 206 12-262 18-224 (398)
38 1z8o_A 6-deoxyerythronolide B 99.9 1.9E-21 6.6E-26 156.1 19.8 206 12-262 14-235 (404)
39 1odo_A Putative cytochrome P45 99.9 2E-21 6.8E-26 156.2 19.7 211 12-262 15-236 (408)
40 1q5d_A P450 epoxidase; cytochr 99.9 1.2E-21 4.3E-26 157.9 18.5 212 12-262 26-248 (419)
41 3aba_A Cytochrome P450; oxidor 99.9 1.6E-21 5.4E-26 156.5 18.9 206 12-262 19-231 (403)
42 1jfb_A Nitric-oxide reductase 99.9 8.1E-21 2.8E-25 152.6 23.0 212 12-262 17-234 (404)
43 2zbx_A Cytochrome P450-SU1; be 99.9 5.2E-21 1.8E-25 154.0 20.9 205 12-262 24-238 (412)
44 3abb_A CYP105D6, cytochrome P4 99.9 1.5E-21 5.2E-26 156.9 17.5 205 12-262 24-237 (408)
45 3r9b_A Cytochrome P450 164A2; 99.9 2.9E-21 1E-25 155.8 18.5 213 12-262 29-250 (418)
46 2z36_A MOXA, cytochrome P450 t 99.9 4.3E-21 1.5E-25 154.4 19.2 206 12-262 22-239 (413)
47 3ivy_A Cytochrome P450 CYP125; 99.9 9.2E-22 3.2E-26 159.3 15.0 209 12-262 37-262 (433)
48 1ued_A P450 OXYC, P450 monooxy 99.9 5.5E-21 1.9E-25 153.5 19.2 204 12-262 24-239 (406)
49 2z3t_A Cytochrome P450; monoxy 99.9 6.1E-21 2.1E-25 154.1 19.4 212 12-262 20-248 (425)
50 1gwi_A CYP154C1, cytochrome P4 99.9 1.6E-20 5.3E-25 151.1 21.0 206 12-262 17-236 (411)
51 2dkk_A Cytochrome P450; CYP158 99.9 2.2E-21 7.4E-26 156.0 15.6 205 12-262 27-239 (411)
52 2uuq_A CYP130, cytochrome P450 99.9 6.8E-21 2.3E-25 153.3 16.6 218 2-262 12-244 (414)
53 2xbk_A PIMD protein; epoxidati 99.9 6.8E-20 2.3E-24 146.9 20.8 199 12-262 26-235 (404)
54 3buj_A CALO2; heme, iron, meta 99.9 4.1E-20 1.4E-24 148.1 19.2 207 12-262 13-227 (397)
55 1s1f_A Putative cytochrome P45 99.9 1.1E-20 3.7E-25 151.8 15.6 205 12-262 24-236 (406)
56 2zwu_A Camphor 5-monooxygenase 99.9 2.6E-20 9.1E-25 149.9 17.8 201 12-262 37-243 (415)
57 3nc3_A Cytochrome P450 CYPX; c 99.9 3.4E-21 1.2E-25 156.2 12.6 210 12-262 53-263 (441)
58 3lxh_A Cytochrome P450; heme, 99.9 1.9E-20 6.5E-25 151.2 15.6 211 12-262 38-250 (421)
59 2jjn_A Cytochrome P450 113A1; 99.8 9.3E-20 3.2E-24 146.7 17.9 207 12-262 28-235 (411)
60 3dax_A Cytochrome P450 7A1; ch 99.8 1.3E-20 4.3E-25 155.2 12.9 234 1-261 24-261 (491)
61 3oft_A Cytochrome P450, CYP101 99.8 6.2E-20 2.1E-24 147.1 16.4 204 12-262 24-228 (396)
62 3mgx_A Putative P450 monooxyge 99.8 3.1E-20 1.1E-24 149.4 14.7 205 12-262 37-248 (415)
63 1lfk_A OXYB, P450 monooxygenas 99.8 7.9E-20 2.7E-24 146.5 16.8 204 12-262 13-230 (398)
64 3rwl_A Cytochrome P450 alkane 99.8 3.6E-19 1.2E-23 143.8 19.4 211 12-262 38-259 (426)
65 2wiy_A XPLA-heme, cytochrome P 99.8 1.8E-18 6E-23 138.4 18.5 207 12-262 20-227 (394)
66 1n40_A P450 MT2, cytochrome P4 99.8 2.3E-19 7.8E-24 143.7 13.0 202 12-262 16-227 (396)
67 3b6h_A Prostacyclin synthase; 99.8 3.2E-18 1.1E-22 141.1 16.4 147 1-160 29-177 (498)
68 3p3o_A Cytochrome P450; monoox 99.8 1.3E-18 4.4E-23 140.2 12.5 207 12-262 33-247 (416)
69 3b4x_A 367AA long hypothetical 99.8 3E-18 1E-22 135.8 14.1 193 14-262 1-204 (367)
70 1io7_A Cytochrome P450 CYP119; 99.8 9.6E-18 3.3E-22 133.0 15.0 192 14-262 1-203 (368)
71 2rfb_A Cytochrome P450; heme, 99.7 1.4E-17 4.8E-22 130.8 12.1 179 23-262 2-182 (343)
72 3b98_A Prostaglandin I2 syntha 99.7 1.5E-17 5E-22 136.4 11.9 144 1-157 29-174 (475)
73 3dan_A Cytochrome P450 74A2; A 99.7 4.6E-17 1.6E-21 133.4 11.4 153 1-160 19-187 (473)
74 3dsk_A Cytochrome P450 74A, ch 99.7 4.7E-18 1.6E-22 140.0 5.0 153 1-160 38-205 (495)
75 4dxy_A Cytochrome P450, CYP101 99.7 5.9E-15 2E-19 118.6 16.6 211 12-262 37-249 (417)
76 4dnj_A Putative cytochrome P45 99.6 6E-14 2.1E-18 112.8 15.0 134 12-158 34-171 (412)
77 2yjn_B Erycii, DTDP-4-keto-6-d 97.9 2.1E-07 7.3E-12 73.5 -4.7 113 12-160 59-181 (381)
78 2krb_A Eukaryotic translation 90.0 1.8 6.1E-05 25.1 7.2 50 2-53 6-66 (81)
79 1s79_A Lupus LA protein; RRM, 89.4 1.6 5.3E-05 27.0 6.4 45 14-58 24-76 (103)
80 2diu_A KIAA0430 protein; struc 89.0 0.89 3E-05 27.7 4.7 61 2-63 14-76 (96)
81 2nlw_A Eukaryotic translation 85.8 2.6 9E-05 26.0 5.8 47 14-60 34-88 (105)
82 1iqt_A AUF1, heterogeneous nuc 84.7 2.2 7.5E-05 24.2 4.8 50 2-55 4-62 (75)
83 2a3j_A U1 small nuclear ribonu 83.4 3.2 0.00011 26.8 5.5 47 16-62 48-101 (127)
84 2mss_A Protein (musashi1); RNA 82.5 3.6 0.00012 23.3 5.1 50 2-55 4-62 (75)
85 1nu4_A U1A RNA binding domain; 81.9 3 0.0001 25.1 4.8 37 17-53 28-70 (97)
86 3d2w_A TAR DNA-binding protein 81.8 4.3 0.00015 24.1 5.4 37 14-50 24-64 (89)
87 1whx_A Hypothetical protein ri 81.0 7.7 0.00026 24.1 6.6 50 14-63 23-76 (111)
88 1x4c_A Splicing factor, argini 79.0 6.7 0.00023 24.2 5.8 40 14-53 28-69 (108)
89 3s7r_A Heterogeneous nuclear r 78.6 4.6 0.00016 23.6 4.8 41 14-54 24-73 (87)
90 3beg_B Splicing factor, argini 78.0 6.7 0.00023 24.6 5.6 48 2-53 21-70 (115)
91 1sjq_A Polypyrimidine tract-bi 77.8 7.7 0.00026 24.1 5.7 38 15-52 30-70 (105)
92 2dgx_A KIAA0430 protein; RRM d 77.2 4.8 0.00016 24.2 4.6 36 18-53 30-71 (96)
93 2cph_A RNA binding motif prote 76.6 10 0.00035 23.1 6.4 48 14-61 28-87 (107)
94 2wbr_A GW182, gawky, LD47780P; 75.8 10 0.00036 22.7 5.7 39 14-52 20-61 (89)
95 2do4_A Squamous cell carcinoma 75.6 8.6 0.0003 23.1 5.6 40 14-53 30-77 (100)
96 4fxv_A ELAV-like protein 1; RN 75.5 7.8 0.00027 23.5 5.3 48 2-53 24-80 (99)
97 2dh8_A DAZ-associated protein 74.9 7.4 0.00025 23.7 5.2 45 14-58 29-82 (105)
98 2cpf_A RNA binding motif prote 74.8 8.5 0.00029 23.0 5.4 40 14-53 18-69 (98)
99 4f25_A Polyadenylate-binding p 74.8 8.6 0.00029 24.0 5.5 48 2-53 10-64 (115)
100 1x5u_A Splicing factor 3B subu 74.7 12 0.0004 22.7 6.5 49 14-62 28-86 (105)
101 2dgv_A HnRNP M, heterogeneous 74.4 11 0.00037 22.2 6.2 40 14-53 21-67 (92)
102 3ex7_B RNA-binding protein 8A; 74.4 14 0.00047 23.4 6.6 49 14-62 35-93 (126)
103 1wex_A Hypothetical protein (r 74.2 9 0.00031 23.6 5.3 39 14-52 28-69 (104)
104 1p27_B RNA-binding protein 8A; 74.2 12 0.00042 22.7 6.5 40 14-53 36-84 (106)
105 2dgs_A DAZ-associated protein 73.3 12 0.00042 22.4 6.4 49 14-62 23-80 (99)
106 1oo0_B CG8781-PA, drosophila Y 72.3 13 0.00043 22.8 5.8 40 14-53 39-87 (110)
107 3md1_A Nuclear and cytoplasmic 72.2 9.9 0.00034 21.8 5.0 48 2-53 6-62 (83)
108 2d9p_A Polyadenylate-binding p 72.2 11 0.00039 22.7 5.5 48 14-61 28-83 (103)
109 1wg5_A Heterogeneous nuclear r 72.0 13 0.00043 22.7 5.7 49 14-62 28-85 (104)
110 2cq3_A RNA-binding protein 9; 71.5 13 0.00046 22.4 5.7 40 14-53 28-74 (103)
111 2ytc_A PRE-mRNA-splicing facto 71.3 12 0.00042 21.5 5.7 40 14-53 25-67 (85)
112 2cqi_A Nucleolysin TIAR; RNA r 71.2 12 0.00042 22.6 5.5 39 14-52 28-73 (103)
113 2cq1_A PTB-like protein L; RRM 71.1 9.2 0.00032 23.4 4.8 39 14-52 28-69 (101)
114 3ulh_A THO complex subunit 4; 70.7 12 0.0004 22.8 5.4 40 14-53 42-89 (107)
115 2rs2_A Musashi-1, RNA-binding 70.5 10 0.00035 23.4 5.1 41 14-54 38-87 (109)
116 1whw_A Hypothetical protein ri 70.3 15 0.0005 22.0 6.2 40 14-53 21-69 (99)
117 2cqd_A RNA-binding region cont 70.3 15 0.0005 22.9 5.8 45 14-58 30-83 (116)
118 3mdf_A Peptidyl-prolyl CIS-tra 70.1 13 0.00045 21.3 5.8 40 14-53 20-68 (85)
119 2dnh_A Bruno-like 5, RNA bindi 69.9 10 0.00035 23.0 5.0 40 14-53 28-75 (105)
120 3v4m_A Splicing factor U2AF 65 69.8 16 0.00054 22.5 5.7 48 15-62 29-88 (105)
121 3ucg_A Polyadenylate-binding p 69.6 14 0.00048 21.5 5.6 45 14-58 19-72 (89)
122 2ad9_A Polypyrimidine tract-bi 69.5 9.3 0.00032 24.3 4.7 39 14-52 44-85 (119)
123 2x1f_A MRNA 3'-END-processing 69.3 15 0.00052 21.8 5.8 48 2-53 7-63 (96)
124 2dnm_A SRP46 splicing factor; 69.1 13 0.00044 22.5 5.3 48 14-61 26-83 (103)
125 2voo_A Lupus LA protein; RNA-b 69.0 9.6 0.00033 26.6 5.1 42 13-54 121-170 (193)
126 2cpi_A CCR4-NOT transcription 68.7 5.4 0.00018 24.8 3.5 47 16-62 30-92 (111)
127 2dgu_A Heterogeneous nuclear r 68.5 16 0.00054 22.1 5.6 40 14-53 24-64 (103)
128 3zzy_A Polypyrimidine tract-bi 68.4 13 0.00044 24.1 5.2 40 14-53 41-85 (130)
129 2fy1_A RNA-binding motif prote 68.2 17 0.00057 22.7 5.8 49 14-62 20-77 (116)
130 2i2y_A Fusion protein consists 68.1 23 0.00077 23.3 6.8 47 15-61 87-138 (150)
131 2jwn_A Embryonic polyadenylate 67.9 11 0.00038 23.8 4.9 45 14-58 49-102 (124)
132 4a8x_A RNA-binding protein wit 67.7 15 0.00053 21.2 5.9 40 14-53 17-66 (88)
133 2pe8_A Splicing factor 45; RRM 67.6 15 0.00052 22.6 5.3 50 13-62 25-85 (105)
134 1x4g_A Nucleolysin TIAR; struc 67.5 16 0.00056 22.3 5.6 40 14-53 38-80 (109)
135 1x4b_A Heterogeneous nuclear r 67.1 9.1 0.00031 23.8 4.4 45 14-58 40-93 (116)
136 2hvz_A Splicing factor, argini 67.1 14 0.00048 22.2 5.1 48 2-53 5-56 (101)
137 2dgt_A RNA-binding protein 30; 67.1 16 0.00055 21.5 5.3 45 14-58 23-69 (92)
138 1x4h_A RNA-binding protein 28; 67.0 19 0.00064 22.0 5.8 40 14-53 28-76 (111)
139 1sjr_A Polypyrimidine tract-bi 66.9 17 0.00057 24.7 5.7 40 14-53 59-103 (164)
140 2jvr_A Nucleolar protein 3; RN 66.8 14 0.00047 23.1 5.0 40 14-53 41-86 (111)
141 1x5s_A Cold-inducible RNA-bind 66.8 18 0.00062 21.7 6.0 49 14-62 25-83 (102)
142 2ywk_A Putative RNA-binding pr 66.5 15 0.00051 21.7 5.1 39 14-52 29-75 (95)
143 1why_A Hypothetical protein ri 66.5 18 0.00061 21.5 5.7 40 14-53 30-72 (97)
144 2dnp_A RNA-binding protein 14; 66.4 17 0.00058 21.2 5.6 40 14-53 22-62 (90)
145 2cq4_A RNA binding motif prote 66.3 11 0.00038 23.3 4.6 45 14-58 38-91 (114)
146 2cqc_A Arginine/serine-rich sp 66.3 16 0.00056 21.5 5.3 40 14-53 28-76 (95)
147 3s8s_A Histone-lysine N-methyl 66.3 15 0.0005 22.8 5.1 40 14-53 19-67 (110)
148 2kxn_B Transformer-2 protein h 65.7 24 0.0008 22.6 6.9 39 15-53 60-107 (129)
149 3bs9_A Nucleolysin TIA-1 isofo 65.5 15 0.00053 21.1 4.9 40 14-53 19-67 (87)
150 2jvo_A Nucleolar protein 3; nu 65.3 16 0.00055 22.5 5.2 39 15-53 45-84 (108)
151 2dnq_A RNA-binding protein 4B; 65.3 18 0.00062 21.1 5.7 39 14-52 21-60 (90)
152 2kvi_A Nuclear polyadenylated 65.2 19 0.00065 21.4 6.3 47 15-61 25-73 (96)
153 2e5h_A Zinc finger CCHC-type a 65.0 17 0.00058 21.4 5.1 40 14-53 29-77 (94)
154 1uaw_A Mouse-musashi-1; RNP-ty 64.9 7.4 0.00025 21.9 3.3 49 2-54 5-62 (77)
155 1p1t_A Cleavage stimulation fa 64.9 19 0.00066 21.6 5.5 40 14-53 21-69 (104)
156 3lqv_A PRE-mRNA branch site pr 64.7 22 0.00075 21.9 6.6 39 14-52 21-65 (115)
157 1x4d_A Matrin 3; structural ge 64.3 16 0.00056 22.3 4.9 39 14-52 29-70 (102)
158 3r27_A HnRNP L, heterogeneous 64.1 22 0.00076 21.7 5.8 39 14-52 34-75 (100)
159 2err_A Ataxin-2-binding protei 63.9 11 0.00038 23.2 4.2 40 14-53 42-88 (109)
160 1x4f_A Matrin 3; structural ge 63.9 7.3 0.00025 24.5 3.3 38 15-52 40-80 (112)
161 2cpj_A Non-POU domain-containi 63.6 15 0.0005 22.0 4.7 48 14-61 28-79 (99)
162 2dgo_A Cytotoxic granule-assoc 63.5 15 0.0005 22.8 4.8 40 14-53 28-76 (115)
163 1rk8_A CG8781-PA, CG8781-PA pr 63.2 18 0.00061 24.3 5.5 40 14-53 85-133 (165)
164 1x4a_A Splicing factor, argini 63.0 23 0.00079 21.6 5.8 40 14-53 35-80 (109)
165 2ku7_A MLL1 PHD3-CYP33 RRM chi 62.9 23 0.0008 22.7 5.9 40 14-53 76-124 (140)
166 2jrs_A RNA-binding protein 39; 62.9 18 0.0006 22.3 5.0 39 14-52 39-86 (108)
167 2dhg_A TRNA selenocysteine ass 62.7 20 0.0007 21.6 5.3 40 14-53 22-70 (104)
168 2div_A TRNA selenocysteine ass 62.7 16 0.00053 21.9 4.7 40 14-53 22-71 (99)
169 2kn4_A Immunoglobulin G-bindin 62.1 23 0.00079 23.4 5.9 49 14-62 83-141 (158)
170 2cqg_A TDP-43, TAR DNA-binding 62.1 20 0.00068 21.6 5.1 39 14-52 28-75 (103)
171 2lea_A Serine/arginine-rich sp 61.9 25 0.00086 22.7 5.8 40 14-53 60-108 (135)
172 2cpz_A CUG triplet repeat RNA- 61.9 11 0.00039 23.3 4.1 40 14-53 38-86 (115)
173 1x4e_A RNA binding motif, sing 61.8 14 0.00046 21.3 4.2 39 14-52 18-65 (85)
174 2dis_A Unnamed protein product 61.7 24 0.00083 21.4 5.6 40 14-53 21-71 (109)
175 3pgw_S U1-70K; protein-RNA com 61.7 17 0.00056 29.3 5.7 40 14-53 115-163 (437)
176 2cq0_A Eukaryotic translation 61.6 8.9 0.00031 23.2 3.4 40 14-53 28-76 (103)
177 1whv_A Poly(A)-specific ribonu 61.4 16 0.00056 22.3 4.3 40 13-52 27-67 (100)
178 1wf0_A TDP-43, TAR DNA-binding 61.3 9.2 0.00031 22.3 3.3 46 2-51 10-59 (88)
179 2dgp_A Bruno-like 4, RNA bindi 61.1 21 0.00071 21.6 5.1 40 14-53 26-74 (106)
180 1l3k_A Heterogeneous nuclear r 59.8 21 0.00073 24.4 5.6 50 2-55 18-76 (196)
181 2cqb_A Peptidyl-prolyl CIS-tra 59.1 11 0.00039 22.6 3.6 40 14-53 25-73 (102)
182 3ue2_A Poly(U)-binding-splicin 58.9 29 0.001 21.9 5.5 52 12-63 36-101 (118)
183 2dnz_A Probable RNA-binding pr 58.6 25 0.00087 20.6 6.5 49 14-62 18-76 (95)
184 2do0_A HnRNP M, heterogeneous 58.3 22 0.00077 21.8 5.0 40 14-53 28-75 (114)
185 1u6f_A Tcubp1, RNA-binding pro 57.8 25 0.00084 22.6 5.3 47 15-61 56-112 (139)
186 3ctr_A Poly(A)-specific ribonu 57.6 13 0.00045 22.8 3.4 41 12-52 16-57 (101)
187 2e5i_A Heterogeneous nuclear r 57.3 27 0.00091 22.3 5.2 40 14-53 38-81 (124)
188 3n9u_C Cleavage and polyadenyl 57.2 26 0.00089 23.4 5.4 40 14-53 68-118 (156)
189 2qfj_A FBP-interacting repress 56.8 44 0.0015 23.2 6.9 39 14-52 41-88 (216)
190 2cq2_A Hypothetical protein LO 56.8 34 0.0012 21.5 5.6 40 14-53 40-82 (114)
191 2d9o_A DNAJ (HSP40) homolog, s 56.2 31 0.0011 20.9 6.6 40 14-53 30-73 (100)
192 2xs2_A Deleted in azoospermia- 56.2 11 0.00038 22.7 3.2 39 14-52 22-68 (102)
193 2khc_A Testis-specific RNP-typ 55.9 20 0.00069 22.2 4.5 39 15-53 54-101 (118)
194 1wf1_A RNA-binding protein RAL 55.7 24 0.00082 21.6 4.7 40 14-53 41-81 (110)
195 2la4_A Nuclear and cytoplasmic 55.4 27 0.00091 20.9 4.9 40 14-53 40-82 (101)
196 2e5g_A U6 snRNA-specific termi 54.9 30 0.001 20.3 5.8 39 14-52 21-63 (94)
197 1x5p_A Negative elongation fac 54.9 31 0.0011 20.4 5.3 40 14-53 26-68 (97)
198 2cjk_A Nuclear polyadenylated 54.9 21 0.00072 23.6 4.7 46 14-59 100-154 (167)
199 1h2v_Z 20 kDa nuclear CAP bind 54.0 24 0.00081 23.3 4.8 40 14-53 52-100 (156)
200 3tyt_A Heterogeneous nuclear r 54.0 31 0.001 24.2 5.5 47 15-61 19-70 (205)
201 1l3k_A Heterogeneous nuclear r 52.7 25 0.00084 24.1 4.9 45 14-58 117-170 (196)
202 3md3_A Nuclear and cytoplasmic 52.4 25 0.00085 23.1 4.8 47 2-52 5-59 (166)
203 2e44_A Insulin-like growth fac 52.1 34 0.0012 20.1 6.2 39 14-52 28-72 (96)
204 2e5j_A Methenyltetrahydrofolat 51.4 36 0.0012 20.2 5.9 40 14-53 32-75 (97)
205 3s6e_A RNA-binding protein 39; 51.3 31 0.0011 21.6 4.7 48 15-62 31-84 (114)
206 1b7f_A Protein (SXL-lethal pro 50.8 41 0.0014 22.2 5.7 47 2-52 8-63 (168)
207 1x5t_A Splicing factor 3B subu 50.4 20 0.00069 21.1 3.7 40 14-53 18-67 (96)
208 3p5t_L Cleavage and polyadenyl 50.4 24 0.00082 20.6 3.9 47 2-52 6-63 (90)
209 2cpy_A RNA-binding protein 12; 50.0 16 0.00055 22.7 3.2 45 14-58 28-81 (114)
210 2f3j_A RNA and export factor b 50.0 53 0.0018 22.4 6.1 40 14-53 101-148 (177)
211 2ghp_A U4/U6 snRNA-associated 50.0 31 0.0011 25.6 5.3 49 14-62 54-109 (292)
212 4f02_A Polyadenylate-binding p 49.9 36 0.0012 23.8 5.5 48 2-53 20-76 (213)
213 2kt5_A RNA and export factor-b 49.9 45 0.0015 20.9 5.7 47 15-61 49-104 (124)
214 3nmr_A Cugbp ELAV-like family 48.8 38 0.0013 22.5 5.3 40 14-53 108-155 (175)
215 2dha_A FLJ20171 protein; RRM d 48.6 19 0.00066 22.9 3.4 41 14-54 36-88 (123)
216 2j76_E EIF-4B, EIF4B, eukaryot 48.4 41 0.0014 20.0 5.1 43 15-58 33-85 (100)
217 1fxl_A Paraneoplastic encephal 48.2 30 0.001 22.8 4.6 40 14-53 15-63 (167)
218 1x5o_A RNA binding motif, sing 47.3 34 0.0012 21.0 4.5 40 14-53 38-85 (114)
219 2ki2_A SS-DNA binding protein 46.6 29 0.001 20.1 3.9 38 15-53 15-61 (90)
220 2cpd_A Apobec-1 stimulating pr 46.5 44 0.0015 19.8 5.8 39 14-52 28-69 (99)
221 2bz2_A Negative elongation fac 45.7 44 0.0015 21.0 4.8 39 15-53 51-92 (121)
222 2hgn_A Heterogeneous nuclear r 44.6 31 0.0011 22.5 4.0 48 14-62 59-114 (139)
223 2cpx_A Hypothetical protein FL 44.0 33 0.0011 21.0 4.1 48 14-61 38-95 (115)
224 2hzc_A Splicing factor U2AF 65 44.0 44 0.0015 19.1 6.0 46 2-51 11-70 (87)
225 1jmt_A Splicing factor U2AF 35 43.9 53 0.0018 20.0 5.9 39 23-61 49-96 (104)
226 1wez_A HnRNP H', FTP-3, hetero 43.8 33 0.0011 20.8 3.9 48 14-62 28-83 (102)
227 1ghh_A DINI, DNA-damage-induci 43.7 47 0.0016 19.4 4.2 28 16-43 24-54 (81)
228 2hgm_A HNRPF protein, heteroge 43.4 61 0.0021 20.7 5.2 44 14-58 55-108 (126)
229 2lxi_A RNA-binding protein 10; 42.5 27 0.00092 20.5 3.3 40 14-53 14-63 (91)
230 2cpe_A RNA-binding protein EWS 42.2 32 0.0011 21.0 3.7 46 14-59 28-91 (113)
231 3pgw_A U1-A; protein-RNA compl 41.1 41 0.0014 24.7 4.8 52 2-53 14-71 (282)
232 3ns6_A Eukaryotic translation 41.0 56 0.0019 19.5 5.8 39 15-53 26-73 (100)
233 2la6_A RNA-binding protein FUS 39.9 58 0.002 19.2 5.5 39 14-52 26-81 (99)
234 1wi8_A EIF-4B, eukaryotic tran 39.4 61 0.0021 19.4 5.1 44 14-58 28-81 (104)
235 3fgx_A Rbstp2171; structural g 39.2 20 0.00069 22.5 2.2 18 16-33 8-25 (114)
236 3q2s_C Cleavage and polyadenyl 37.5 55 0.0019 23.4 4.8 40 14-53 81-131 (229)
237 2lmi_A GRSF-1, G-rich sequence 36.4 46 0.0016 20.2 3.7 39 15-53 25-74 (107)
238 2dit_A HIV TAT specific factor 35.8 73 0.0025 19.5 4.7 39 15-53 40-83 (112)
239 2db1_A Heterogeneous nuclear r 35.6 28 0.00095 21.7 2.7 44 14-57 30-84 (118)
240 2dnn_A RNA-binding protein 12; 35.0 73 0.0025 19.6 4.5 44 14-58 29-80 (109)
241 2hgl_A HNRPF protein, heteroge 34.7 30 0.001 22.4 2.8 41 14-54 57-108 (136)
242 2dnl_A Cytoplasmic polyadenyla 33.3 56 0.0019 20.1 3.8 39 14-53 21-71 (114)
243 2ek1_A RNA-binding protein 12; 32.7 23 0.00079 20.8 1.8 40 14-53 28-76 (95)
244 1fry_A Myeloid antimicrobial p 32.6 9.1 0.00031 16.4 -0.0 8 22-29 14-21 (29)
245 2xnq_A Nuclear polyadenylated 31.1 84 0.0029 18.5 5.9 39 15-53 37-76 (97)
246 2dng_A Eukaryotic translation 31.0 86 0.0029 18.6 4.7 44 14-58 28-80 (103)
247 2cqh_A IGF-II mRNA-binding pro 27.6 63 0.0022 18.7 3.2 40 14-53 21-63 (93)
248 2g4b_A Splicing factor U2AF 65 27.0 1.1E+02 0.0038 20.0 4.8 53 2-58 9-75 (172)
249 3tht_A Alkylated DNA repair pr 26.9 1.4E+02 0.0047 23.1 5.6 40 14-53 33-75 (345)
250 3sde_A Paraspeckle component 1 26.3 1.4E+02 0.0047 21.6 5.5 40 14-53 109-156 (261)
251 2adc_A Polypyrimidine tract-bi 26.1 1.7E+02 0.0059 20.5 6.7 48 15-62 49-101 (229)
252 2m2b_A RNA-binding protein 10; 26.1 84 0.0029 19.8 3.8 37 15-52 37-84 (131)
253 2j8a_A Histone-lysine N-methyl 25.3 55 0.0019 21.4 2.6 22 12-33 17-38 (136)
254 1wel_A RNA-binding protein 12; 25.1 1E+02 0.0035 19.2 4.0 39 15-53 39-86 (124)
255 2lkz_A RNA-binding protein 5; 24.9 53 0.0018 19.6 2.5 40 14-53 22-72 (95)
256 2cqp_A RNA-binding protein 12; 23.5 39 0.0013 19.9 1.7 40 14-53 28-76 (98)
257 1qm9_A Polypyrimidine tract-bi 22.6 1.8E+02 0.0063 19.6 5.3 48 15-62 18-70 (198)
258 2cly_C ATP synthase coupling f 21.6 1.3E+02 0.0043 17.4 3.4 34 117-150 12-45 (77)
259 2dgw_A Probable RNA-binding pr 21.5 1.2E+02 0.0043 17.3 4.0 43 15-58 24-74 (91)
260 2fc9_A NCL protein; structure 21.4 66 0.0023 19.0 2.5 40 14-53 28-72 (101)
261 2dnr_A Synaptojanin-1; RRM dom 20.1 1.5E+02 0.0052 17.7 5.3 43 15-57 29-72 (91)
No 1
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=100.00 E-value=1.2e-31 Score=221.01 Aligned_cols=251 Identities=18% Similarity=0.266 Sum_probs=189.7
Q ss_pred CcccccccCCCCchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchhhhhhhhcCccccccC
Q 041575 1 MIGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRMAMEILGYNFLATPSS 80 (263)
Q Consensus 1 llG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (263)
++||++++.....+|..+.+|+++|||||++++|+.++|+|+||+++++++.++...|.+++.......++.++.+++++
T Consensus 18 liGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~~k~il~~~~~~f~~rp~~~~~~~~~~~~~gl~~~ 97 (494)
T 3swz_A 18 LVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATLDIASNNRKGIAFA 97 (494)
T ss_dssp EEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTBBCCCCHHHHHHTTTTCSSSSS
T ss_pred eEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCCCCEEEECCHHHHHHHHHhCcHhhCCCCCcHHHHHhccCCCCeEeC
Confidence 58999988632468999999999999999999999999999999999999998888998888765555555544577778
Q ss_pred CCChhHHHHHhHHHhhcCCh--hHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHHHHHHHHHHHcccc
Q 041575 81 PYGSYWRETRKIATVELLSN--HRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRY 158 (263)
Q Consensus 81 ~~g~~w~~~Rk~~~~~~f~~--~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~ 158 (263)
.+|+.|+.+|+++.+ .|+. ..+..+.+.+.++++.+++.|.+ ..+.++|+...+..+++|+|+.++||.++
T Consensus 98 ~~g~~wr~~Rr~~~~-~f~~~~~~~~~~~~~i~~~~~~l~~~l~~------~~~~~vd~~~~~~~~t~dvi~~~~fG~~~ 170 (494)
T 3swz_A 98 DSGAHWQLHRRLAMA-TFALFKDGDQKLEKIICQEISTLCDMLAT------HNGQSIDISFPVFVAVTNVISLICFNTSY 170 (494)
T ss_dssp CSSHHHHHHHHHHHH-HTTTTSSSTTCHHHHHHHHHHHHHHHHHH------TTTEEECCHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCHHHHHHHHHHHH-HHHHhcchHHHHHHHHHHHHHHHHHHHHH------cCCCcccHHHHHHHHHHHHHHHHHcCCcC
Confidence 779999999999998 5763 44677889999999999999973 24568999999999999999999999998
Q ss_pred CCCcc--hHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHH
Q 041575 159 TSQEG--TDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIY 236 (263)
Q Consensus 159 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~ 236 (263)
+..+. ..+......+........+..++|+++++|. ...+.+....+.+.++++.+++++++....+ ...|+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~p~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~d~l~ 246 (494)
T 3swz_A 171 KNGDPELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFPN-KTLEKLKSHVKIRNDLLNKILENYKEKFRSD---SITNMLD 246 (494)
T ss_dssp CTTCTHHHHHHHHHHHHHHHHCSSSSCCSSCGGGTSCC-SHHHHHHHHHHHHHHHHHHHHHHHTTTCCTT---CCCSHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---chhHHHH
Confidence 65221 1222223333333333445677899888873 3345666777788888888888877654332 3479999
Q ss_pred HHHhccccccc------cCCCCCchhhhhhhc
Q 041575 237 VMLSLLYDNAK------QLPDSDADTVIKALC 262 (263)
Q Consensus 237 ~ll~~~~~~~~------~~~~~l~~~~i~~~~ 262 (263)
.|+++..+... ..+..+++++|.+++
T Consensus 247 ~ll~~~~~~~~~~~~~~~~~~~l~~~~i~~~~ 278 (494)
T 3swz_A 247 TLMQAKMNSDNGNAGPDQDSELLSDNHILTTI 278 (494)
T ss_dssp HHHHHHHTSCCC----CCSSGGGCHHHHHHHH
T ss_pred HHHHHHHhhhcccccccccccccCHHHHHHHH
Confidence 99986532210 123468899887764
No 2
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=99.97 E-value=2.8e-30 Score=213.54 Aligned_cols=251 Identities=15% Similarity=0.241 Sum_probs=178.8
Q ss_pred CcccccccCCCCchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchhhhhhhhcCccccccC
Q 041575 1 MIGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRMAMEILGYNFLATPSS 80 (263)
Q Consensus 1 llG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (263)
++||++++. .+++..+.+|+++|||||++++|+.++|+|+||+++++|+.++...|.+++..........+ .+++++
T Consensus 19 ~iG~~~~~~--~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~~~~~~~g-~~l~~~ 95 (507)
T 3pm0_A 19 LIGNAAAVG--QAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQGSAFADRPSFASFRVVSGG-RSMAFG 95 (507)
T ss_dssp -----------CCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTSCBCCCCHHHHHGGGG-TCSSSS
T ss_pred eeCchhhcC--ccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCcchHHHhhcCC-CceEEC
Confidence 589999887 78999999999999999999999999999999999999998887888888765433333322 367677
Q ss_pred CCChhHHHHHhHHHhhcCChhH------HHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHHHHHHHHHHH
Q 041575 81 PYGSYWRETRKIATVELLSNHR------LEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIE 154 (263)
Q Consensus 81 ~~g~~w~~~Rk~~~~~~f~~~~------l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~f 154 (263)
.+|+.|+++|+++.+ .|+... ++.+.+.+.++++.+++.|.+.+ ..+.++|+.+++..+++|+|+.++|
T Consensus 96 ~~g~~w~~~R~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~----~~~~~vd~~~~~~~~~~dvi~~~~f 170 (507)
T 3pm0_A 96 HYSEHWKVQRRAAHS-MMRNFFTRQPRSRQVLEGHVLSEARELVALLVRGS----ADGAFLDPRPLTVVAVANVMSAVCF 170 (507)
T ss_dssp CSSHHHHHHHHHHHH-HHHHSTTSSTTHHHHHHHHHHHHHHHHHHHHHHTT----GGGCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHH-HHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhc----ccCCCcChHHHHHHHHHHHHHHHHc
Confidence 679999999999997 444322 34588999999999999997532 2345899999999999999999999
Q ss_pred ccccCCCcchHHHH---HHHHHHHhhhcccccccccccccccCc--ccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 041575 155 GKRYTSQEGTDLHE---HAASFFTLFGKFVVSDALPFLRWLDIG--GNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVE 229 (263)
Q Consensus 155 G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 229 (263)
|.+++.. +..+.. .+..+...........++|++.++|.. ...+.+.+..+.+.+++.+.++++++....+.
T Consensus 171 G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-- 247 (507)
T 3pm0_A 171 GCRYSHD-DPEFRELLSHNEEFGRTVGAGSLVDVMPWLQYFPNPVRTVFREFEQLNRNFSNFILDKFLRHCESLRPGA-- 247 (507)
T ss_dssp SCCCCTT-CHHHHHHTSCHHHHHHHHSTTCCTTTCGGGGGSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTC--
T ss_pred cccCCCC-CHHHHHHHHHHHHHHHhcccchHHHHhHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--
Confidence 9998763 233333 333334433333355678888888721 13456677778899999999999887755422
Q ss_pred CCCcHHHHHHhcccccccc----CCCCCchhhhhhhc
Q 041575 230 GDEDFIYVMLSLLYDNAKQ----LPDSDADTVIKALC 262 (263)
Q Consensus 230 ~~~d~l~~ll~~~~~~~~~----~~~~l~~~~i~~~~ 262 (263)
.++|+++.|+....+.... .+..+++++|.+++
T Consensus 248 ~~~d~l~~ll~~~~~~~~~~~~~~~~~l~~~~i~~~~ 284 (507)
T 3pm0_A 248 APRDMMDAFILSAEKKAAGDSHGGGARLDLENVPATI 284 (507)
T ss_dssp CCCSHHHHHHHHHHHHHSCC----CCCCCGGGHHHHH
T ss_pred CCccHHHHHHHHhhhhccccccCCCCCCCHHHHHHHH
Confidence 3479999999654332110 12369999988765
No 3
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Probab=99.97 E-value=1e-29 Score=208.73 Aligned_cols=248 Identities=17% Similarity=0.260 Sum_probs=180.2
Q ss_pred CcccccccCCCCc--hhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchhhhhhhhcCccccc
Q 041575 1 MIGHLHLFGGPEP--THRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRMAMEILGYNFLATP 78 (263)
Q Consensus 1 llG~~~~~~~~~~--~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (263)
++||++++.. .. ++..+.+|+++||||+++++|+.++++|+||+++++|+.++...|++++.......+..+ .+++
T Consensus 22 ~~G~~~~~~~-~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~vl~~~~~~f~~~~~~~~~~~~~~~-~~~~ 99 (481)
T 3czh_A 22 FIGNIYSLAA-SSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPLFMKMTKM-GGLL 99 (481)
T ss_dssp TTBHHHHHHH-CSSCHHHHHHHHHHHHCSEEEEEETTEEEEEEESHHHHHHHHTTTTTTTCBCCCCHHHHHHHTT-CSST
T ss_pred ccccHhhcCc-ccCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhhchHhhCCCCCcHHHHhhcCC-CCeE
Confidence 5788877642 22 899999999999999999999999999999999999998776678777654333333222 2555
Q ss_pred cCCCChhHHHHHhHHHhhcCChhHH--HHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHHHHHHHHHHHcc
Q 041575 79 SSPYGSYWRETRKIATVELLSNHRL--EKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGK 156 (263)
Q Consensus 79 ~~~~g~~w~~~Rk~~~~~~f~~~~l--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~ 156 (263)
+..+|+.|+++|+++.+ .|+...+ ..+.+.+.++++.+++.|.+ ..+.++|+.+++..+++|+|+.++||.
T Consensus 100 ~~~~g~~w~~~R~~~~~-~f~~~~~~~~~~~~~i~~~~~~l~~~l~~------~~~~~~d~~~~~~~~~~~vi~~~~fG~ 172 (481)
T 3czh_A 100 NSRYGRGWVDHRRLAVN-SFRYFGYGQKSFESKILEETKFFNDAIET------YKGRPFDFKQLITNAVSNITNLIIFGE 172 (481)
T ss_dssp TCCSSHHHHHHHHHHHH-HHHHTTTTSTTHHHHHHHHHHHHHHHHHT------TTTCCBCCHHHHHHHHHHHHHHHHHSS
T ss_pred eCCCChHHHHHHHHHHH-HHHHhcCChHHHHHHHHHHHHHHHHHHHH------cCCCCcCHHHHHHHHHHHHHHHHHcCC
Confidence 55569999999999998 5765433 57889999999999999973 234579999999999999999999999
Q ss_pred ccCCCcchHHHHH---HHHHHHhhhccc--ccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 041575 157 RYTSQEGTDLHEH---AASFFTLFGKFV--VSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGD 231 (263)
Q Consensus 157 ~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 231 (263)
+++. ++.++... +........... +..++|+++++|. ...+++.+..+.+.+++.+.|+++++....+ .+
T Consensus 173 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~lp~-~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~---~~ 247 (481)
T 3czh_A 173 RFTY-EDTDFQHMIELFSENVELAASASVFLYNAFPWIGILPF-GKHQQLFRNAAVVYDFLSRLIEKASVNRKPQ---LP 247 (481)
T ss_dssp CCCT-TCHHHHHHHHHHHHHHHHTTSHHHHHHHHCGGGGGCSS-SHHHHHHHHHHHHHHHHHHHHHHHHTTCCTT---CC
T ss_pred CCCC-CCHHHHHHHHHHHHHHhhhccchhHHhhhhHHHHhCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---ch
Confidence 9865 22333333 333333322111 3456788777762 2345667777889999999999888653322 34
Q ss_pred CcHHHHHHhccccccccCCCCCchhhhhhhc
Q 041575 232 EDFIYVMLSLLYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 232 ~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~ 262 (263)
+|+++.|+++..+.+.+++..+++++|.+++
T Consensus 248 ~d~l~~ll~~~~~~~~~~~~~l~~~ei~~~~ 278 (481)
T 3czh_A 248 QHFVDAYLDEMDQGKNDPSSTFSKENLIFSV 278 (481)
T ss_dssp SSHHHHHHHHHHHTTTCTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCccccccHHHHHHHH
Confidence 7999999987543211224579999998765
No 4
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Probab=99.97 E-value=1.3e-29 Score=207.91 Aligned_cols=246 Identities=15% Similarity=0.259 Sum_probs=180.1
Q ss_pred CcccccccCCCCchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchhhhhhhhcCccccccC
Q 041575 1 MIGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRMAMEILGYNFLATPSS 80 (263)
Q Consensus 1 llG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (263)
++||++++.. .+++..+.+|+++||||+++++|+.+.|+|+||+++++|+.++...|.+++..........+ .+++++
T Consensus 20 ~iG~~~~~~~-~~~~~~~~~l~~~yG~v~~~~~~~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~~~~~~-~~l~~~ 97 (476)
T 2fdv_A 20 FIGNYLQLNT-EQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEEFSGRGEQATFDWVFKG-YGVVFS 97 (476)
T ss_dssp TTBTGGGCCT-TBHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCCHHHHHHHTT-CSSSSC
T ss_pred ccccHhhcCC-cchHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcChHhhCCCCCcHHHhhhcCC-CCeEec
Confidence 5899988843 68899999999999999999999999999999999999997666677766543322222222 367767
Q ss_pred CCChhHHHHHhHHHhhcCChhHH--HHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHHHHHHHHHHHcccc
Q 041575 81 PYGSYWRETRKIATVELLSNHRL--EKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRY 158 (263)
Q Consensus 81 ~~g~~w~~~Rk~~~~~~f~~~~l--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~ 158 (263)
+ |+.|+++|+++.+ .|+...+ +.+.+.+.++++.+++.|.+ . .+.++|+.+++..+++|+|+.++||.++
T Consensus 98 ~-g~~~~~~Rr~~~~-~f~~~~~~~~~~~~~i~~~~~~l~~~l~~-----~-~~~~vd~~~~~~~~~~~vi~~~~fG~~~ 169 (476)
T 2fdv_A 98 N-GERAKQLRRFSIA-TLRDFGVGKRGIEERIQEEAGFLIDALRG-----T-GGANIDPTFFLSRTVSNVISSIVFGDRF 169 (476)
T ss_dssp C-HHHHHHHHHHHHH-HHHHTTTTSHHHHHHHHHHHHHHHHHHHH-----T-TTCCBCCHHHHHHHHHHHHHHHHHSSCC
T ss_pred C-chHHHHHHHHHHH-HHHHhCCChhhHHHHHHHHHHHHHHHHHh-----c-CCCccChHHHHHHHHHHHHHHHHcCCcC
Confidence 5 9999999999998 6777666 78899999999999999974 1 3357999999999999999999999998
Q ss_pred CCCcchHHHHH---HHHHHHhhhcc--cccccccc-cccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Q 041575 159 TSQEGTDLHEH---AASFFTLFGKF--VVSDALPF-LRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDE 232 (263)
Q Consensus 159 ~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 232 (263)
+..+ .++... +..+....... .+...+|+ ++++| ...++..+..+.+.+++.+.|+++++....+ .++
T Consensus 170 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~--~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~---~~~ 243 (476)
T 2fdv_A 170 DYKD-KEFLSLLRMMLGIFQFTSTSTGQLYEMFSSVMKHLP--GPQQQAFQLLQGLEDFIAKKVEHNQRTLDPN---SPR 243 (476)
T ss_dssp CTTC-HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTTSC--SHHHHHHHHHHHHHHHHHHHHHHHHTTCCTT---SCC
T ss_pred CCCC-HHHHHHHHHHHHHHHhhcccccchhhhhhhHHHhcC--cHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCc
Confidence 7532 233333 33333222111 12335676 55665 3345667777889999999999887653322 347
Q ss_pred cHHHHHHhccccccccCCCCCchhhhhhhc
Q 041575 233 DFIYVMLSLLYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 233 d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~ 262 (263)
|+++.|+.+..+.+...+..+++++|.+++
T Consensus 244 d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~ 273 (476)
T 2fdv_A 244 DFIDSFLIRMQEEEKNPNTEFYLKNLVMTT 273 (476)
T ss_dssp SHHHHHHHHHHHTTTCTTCSCSHHHHHHHH
T ss_pred cHHHHHHHHHHhcccCccccccHHHHHHHH
Confidence 999999987533211124579999998765
No 5
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens}
Probab=99.97 E-value=7.2e-30 Score=210.42 Aligned_cols=250 Identities=18% Similarity=0.239 Sum_probs=180.4
Q ss_pred CcccccccCCCCchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchhhhhhhhcCccccccC
Q 041575 1 MIGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRMAMEILGYNFLATPSS 80 (263)
Q Consensus 1 llG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (263)
++||++++. ++++..+.+|+++|||||++++|+.++++++||+++++|+.++...|.+++.......... +.+++++
T Consensus 26 ~~G~~~~~~--~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~i~~il~~~~~~f~~r~~~~~~~~~~~-~~~l~~~ 102 (495)
T 2hi4_A 26 LLGHVLTLG--KNPHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALVRQGDDFKGRPDLYTSTLITD-GQSLTFS 102 (495)
T ss_dssp TTBTHHHHT--TCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTGGGSCBCCCCHHHHTSTT-SCCTTTS
T ss_pred ceeeHHhcC--ccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhcchhhCCCCCcHHHHHhcC-CCCEEEc
Confidence 578888776 6789999999999999999999999999999999999999876667877765432222222 2366776
Q ss_pred -CCChhHHHHHhHHHhhc--CChhHH---H---HhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHHHHHHHH
Q 041575 81 -PYGSYWRETRKIATVEL--LSNHRL---E---KLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIR 151 (263)
Q Consensus 81 -~~g~~w~~~Rk~~~~~~--f~~~~l---~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~ 151 (263)
++|+.|+++|+++++++ |+..++ . .+.+.+.++++.+++.|.+.+ .++.++|+.+++..+++|+|+.
T Consensus 103 ~~~g~~w~~~Rr~~~~~f~~~s~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~----~~~~~~d~~~~~~~~~~dvi~~ 178 (495)
T 2hi4_A 103 TDSGPVWAARRRLAQNALNTFSIASDPASSSSCYLEEHVSKEAKALISRLQELM----AGPGHFDPYNQVVVSVANVIGA 178 (495)
T ss_dssp SCCSHHHHHHHHHHHHHHHHTTTSBCSSCSSCBHHHHHHHHHHHHHHHHHHHHH----HTTSCBCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHhccCcccccchhhhHHHHHHHHHHHHHHHHHHhc----cCCCccchHHHHHHHHHHHHHH
Confidence 45999999999999842 333332 2 688999999999999997532 1335799999999999999999
Q ss_pred HHHccccCCCcchHHHH---HHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 041575 152 IIEGKRYTSQEGTDLHE---HAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEV 228 (263)
Q Consensus 152 ~~fG~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 228 (263)
++||.+++. ++.++.. .+..+...........++|+++++|. ...+++.+..+.+.+++.+.|+++++....+
T Consensus 179 ~~fG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~lp~-~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~-- 254 (495)
T 2hi4_A 179 MCFGQHFPE-SSDEMLSLVKNTHEFVETASSGNPLDFFPILRYLPN-PALQRFKAFNQRFLWFLQKTVQEHYQDFDKN-- 254 (495)
T ss_dssp HHHGGGSCT-TCHHHHHHHTTTHHHHTTSSTTCGGGTCGGGGGSCC-HHHHHHHHHHHHHHHHHHHHHHHHHHTCCTT--
T ss_pred HHcCCCCCC-CCHHHHHHHHHHHHHHHhcccchHHHHhHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--
Confidence 999998865 2233333 23333333322224456788877762 2345667777889999999999988754332
Q ss_pred CCCCcHHHHHHhccccccccCCCCCchhhhhhhc
Q 041575 229 EGDEDFIYVMLSLLYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 229 ~~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~ 262 (263)
..+|+++.|+++..+.+.+++..+++++|.+++
T Consensus 255 -~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~ 287 (495)
T 2hi4_A 255 -SVRDITGALFKHSKKGPRASGNLIPQEKIVNLV 287 (495)
T ss_dssp -CCCSHHHHHHHHHHHCCEETTEECCTHHHHTHH
T ss_pred -ccccHHHHHHHHhhhccCccccCCCHHHHHHHH
Confidence 347999999965322111123468999988765
No 6
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=99.97 E-value=3.3e-29 Score=205.62 Aligned_cols=245 Identities=17% Similarity=0.267 Sum_probs=181.0
Q ss_pred CcccccccCCCCchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchhhhhhhhcCccccccC
Q 041575 1 MIGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRMAMEILGYNFLATPSS 80 (263)
Q Consensus 1 llG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (263)
++||++++.. .+++..+.+|+++|||||++++|+.++|+|+||+++++|+.++...|.+++..........+ +++++
T Consensus 20 liG~~~~~~~-~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~~~~v~~il~~~~~~f~~r~~~~~~~~~~~~--~l~~~ 96 (476)
T 3e6i_A 20 IIGNLFQLEL-KNIPKSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEALLDYKDEFSGRGDLPAFHAHRDR--GIIFN 96 (476)
T ss_dssp TTBTGGGCCT-TCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTSTTTTCEECCCGGGGGGTTS--SSTTC
T ss_pred cccChhhhcc-ccHhHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcchHhhCCCCCCchhheecCC--CEEec
Confidence 6899998853 68999999999999999999999999999999999999998877778777654433333322 66767
Q ss_pred CCChhHHHHHhHHHhhcCChhHH--HHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHHHHHHHHHHHcccc
Q 041575 81 PYGSYWRETRKIATVELLSNHRL--EKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRY 158 (263)
Q Consensus 81 ~~g~~w~~~Rk~~~~~~f~~~~l--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~ 158 (263)
+ |+.|+++|+++.+ .|+...+ ..+.+.+.++++.+++.|.+ ..+.++|+..++..+++|+|+.++||.++
T Consensus 97 ~-g~~w~~~Rr~~~~-~l~~~~~~~~~~~~~i~~~~~~l~~~l~~------~~~~~~d~~~~~~~~~~dvi~~~~fG~~~ 168 (476)
T 3e6i_A 97 N-GPTWKDIRRFSLT-TLRNYGMGKQGNESRIQREAHFLLEALRK------TQGQPFDPTFLIGCAPCNVIADILFRKHF 168 (476)
T ss_dssp C-STTHHHHHHHHHH-HHHHTC-CCSHHHHHHHHHHHHHHHHHHT------TTTSCBCTHHHHTHHHHHHHHHHHHSCCC
T ss_pred C-CcHHHHHHHHHHH-HHHhcCCCchHHHHHHHHHHHHHHHHHHH------hCCCCcChHHHHHHHHHHHHHHHHcCCCC
Confidence 5 9999999998886 4554333 34678999999999999973 23458999999999999999999999999
Q ss_pred CCCcchHHHHHHHHH---HHhhhcc--ccccccc-ccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Q 041575 159 TSQEGTDLHEHAASF---FTLFGKF--VVSDALP-FLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDE 232 (263)
Q Consensus 159 ~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 232 (263)
+..+ +++......+ +...... .+...+| ++.++| +..++..+..+.+.+++.+.|+++++....+ .+.
T Consensus 169 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~lp--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~ 242 (476)
T 3e6i_A 169 DYND-EKFLRLMYLFNENFHLLSTPWLQLYNNFPSFLHYLP--GSHRKVIKNVAEVKEYVSERVKEHHQSLDPN---CPR 242 (476)
T ss_dssp CTTC-HHHHHHHHHHHHHHHHTTSHHHHHHHHSHHHHTTSC--SHHHHHHHHHHHHHHHHHHHHHHHHHTCCTT---SCC
T ss_pred CCCC-HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC---CCc
Confidence 7633 3333333333 3222211 1234456 666666 3345677778889999999999988765443 246
Q ss_pred cHHHHHHhccccccccCCCCCchhhhhhhc
Q 041575 233 DFIYVMLSLLYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 233 d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~ 262 (263)
|+++.|+.+..+...+++..+++++|.+++
T Consensus 243 d~~~~ll~~~~~~~~~~~~~l~~~~i~~~~ 272 (476)
T 3e6i_A 243 DLTDCLLVEMEKEKHSAERLYTMDGITVTV 272 (476)
T ss_dssp SHHHHHHHHHHSSSSCSSCSCCHHHHHHHH
T ss_pred cHHHHHHHHHHhcccCCCCCcCHHHHHHHH
Confidence 999999986544322334569999998765
No 7
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=99.97 E-value=4.9e-29 Score=204.54 Aligned_cols=246 Identities=17% Similarity=0.282 Sum_probs=179.3
Q ss_pred CcccccccCCCCchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchhhhhhhhcCccccccC
Q 041575 1 MIGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRMAMEILGYNFLATPSS 80 (263)
Q Consensus 1 llG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (263)
++||++++.. .+++..+.+|+++||||+++++|+.+.|+|+||+++++|+.++...|.+++..........+ .+++++
T Consensus 20 ~iG~~~~~~~-~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~~~~~~-~~l~~~ 97 (476)
T 1po5_A 20 VLGNLLQMDR-KGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVDPIFQG-YGVIFA 97 (476)
T ss_dssp TTBTGGGCCT-TCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCGGGGCSCCSS-CCCCCS
T ss_pred ccccHHhccC-CcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCCcHHHHhhcCC-CceEec
Confidence 5899988832 68999999999999999999999989999999999999997766677766543222222222 366767
Q ss_pred CCChhHHHHHhHHHhhcCChh--HHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHHHHHHHHHHHcccc
Q 041575 81 PYGSYWRETRKIATVELLSNH--RLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRY 158 (263)
Q Consensus 81 ~~g~~w~~~Rk~~~~~~f~~~--~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~ 158 (263)
+|+.|+++|+++.+ .|++. .++.+.+.+.++++.+++.|.+ . .+.++|+.+++..+++|+|+.++||.++
T Consensus 98 -~g~~w~~~Rr~~~~-~f~~~~~~~~~~~~~i~~~~~~l~~~l~~-----~-~~~~~d~~~~~~~~~~~vi~~~~fG~~~ 169 (476)
T 1po5_A 98 -NGERWRALRRFSLA-TMRDFGMGKRSVEERIQEEARCLVEELRK-----S-KGALLDNTLLFHSITSNIICSIVFGKRF 169 (476)
T ss_dssp -SHHHHHHHHHHHHH-HHHHSCCCHHHHHHHHHHHHHHHHHHHHH-----T-TTCCBCCHHHHHHHHHHHHHHHHHSSCC
T ss_pred -CCcHHHHHHHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHHHHh-----c-CCCccCHHHHHHHHHHHHHHHHHcCCCC
Confidence 49999999999997 57766 4578899999999999999974 1 2357999999999999999999999998
Q ss_pred CCCcchHHHHHHHHHHHhhhcc-----cccccccc-cccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Q 041575 159 TSQEGTDLHEHAASFFTLFGKF-----VVSDALPF-LRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDE 232 (263)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 232 (263)
+..+ .++....+.+...+... .....+|+ ++++| ...++..+..+.+.+++.+.|+++++....+ .++
T Consensus 170 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~lp--~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~---~~~ 243 (476)
T 1po5_A 170 DYKD-PVFLRLLDLFFQSFSLISSFSSQVFELFSGFLKHFP--GTHRQIYRNLQEINTFIGQSVEKHRATLDPS---NPR 243 (476)
T ss_dssp CTTC-HHHHHHHHHHHHHTTTCCTTHHHHHHHTHHHHHTSS--CSHHHHHHHHHHHHHHHHHHHHHHHTTCCTT---SCC
T ss_pred CCCC-HHHHHHHHHHHHHHhhhcchhhHHHHhhhHHHHhcC--cHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---Ccc
Confidence 7532 34555544444333111 12235675 45565 3345666777889999999999887653322 346
Q ss_pred cHHHHHHhccccccccCCCCCchhhhhhhc
Q 041575 233 DFIYVMLSLLYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 233 d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~ 262 (263)
|+++.|+.+..+.+.+++..+++++|.+++
T Consensus 244 d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~ 273 (476)
T 1po5_A 244 DFIDVYLLRMEKDKSDPSSEFHHQNLILTV 273 (476)
T ss_dssp SHHHHHHHHHHHHTCCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Confidence 999999975432211123468999998765
No 8
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3tik_A* 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Probab=99.97 E-value=1.2e-29 Score=206.72 Aligned_cols=242 Identities=13% Similarity=0.147 Sum_probs=184.9
Q ss_pred CcccccccCCCCchhHHHHHHHhhcC-CeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchhhhhhhhcCcccccc
Q 041575 1 MIGHLHLFGGPEPTHRILGNMANKYG-PIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRMAMEILGYNFLATPS 79 (263)
Q Consensus 1 llG~~~~~~~~~~~~~~~~~~~~~yG-~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (263)
++||++++. .+++.++.+|+++|| |||++++++.++|+|+||+++++++.++...|.+++.........+. ++++
T Consensus 14 ~iG~~~~~~--~~~~~~~~~~~~~yG~~i~~~~~~~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~~~~~~g~--~~~~ 89 (450)
T 3gw9_A 14 ILGHIIQFG--KSPLGFMQECKRQLKSGIFTINIVGKRVTIVGDPHEHSRFFLPRNEVLSPREVYSFMVPVFGE--GVAY 89 (450)
T ss_dssp TTBTHHHHH--HCHHHHHHHHHHHHTCSEEEEEETTEEEEEECCGGGTHHHHSSCTTTEESTGGGGGGHHHHCT--TSGG
T ss_pred hhccHHHHc--cCHHHHHHHHHHHhCCCeEEEEECCEeEEEEeCHHHHHHHHhCChhhccchhhHHHHHHHhcC--Cccc
Confidence 689998886 679999999999999 99999999999999999999999998777778777654333222222 5555
Q ss_pred CCCChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHH-HHHHhccccCCCCcceehhHHHHHHHHHHHHHHHHcccc
Q 041575 80 SPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIK-GLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRY 158 (263)
Q Consensus 80 ~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~-~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~ 158 (263)
..+|+.|+++|+++.+ .|+..+++.+.+.+.+++.++++ .|. ..+.++|+.+++..+++++|+.++||.++
T Consensus 90 ~~~~~~~~~~R~~~~~-~f~~~~l~~~~~~i~~~~~~ll~~~~~-------~~~~~vd~~~~~~~~~~~~i~~~~fG~~~ 161 (450)
T 3gw9_A 90 AAPYPRMREQLNFLAE-ELTIAKFQNFVPAIQHEVRKFMAANWD-------KDEGEINLLEDCSTMIINTACQCLFGEDL 161 (450)
T ss_dssp GSCHHHHHHHHHHHHH-TTSGGGCTTHHHHHHHHHHHHHHHHSC-------SSEEEEEHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CCCcHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHhc-------cCCCcccHHHHHHHHHHHHHHHHHcCcch
Confidence 5469999999999997 78999999999999999999999 553 13457999999999999999999999987
Q ss_pred CCC-cchHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHH
Q 041575 159 TSQ-EGTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYV 237 (263)
Q Consensus 159 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ 237 (263)
+.. +..++.+.+..+.... .....++|++.++|. ...++..++.+.+.+++.+.|+++++..... ....+|+++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~P~l~~lp~-~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~-~~~~~d~l~~ 237 (450)
T 3gw9_A 162 RKRLDARRFAQLLAKMESSL--IPAAVFLPILLKLPL-PQSARCHEARTELQKILSEIIIARKEEEVNK-DSSTSDLLSG 237 (450)
T ss_dssp HHHSCHHHHHHHHHHHHHTC--CGGGGTCGGGGGSCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SCCCCSHHHH
T ss_pred hhhhhhHHHHHHHHHHHhcc--ccchhcccchhccCC-chhHHHHHHHHHHHHHHHHHHHHHHHhhccc-CCccchHHHH
Confidence 542 2344555544443322 123446788888873 3345667778889999999999887643211 1244799999
Q ss_pred HHhccccccccCCCCCchhhhhhhc
Q 041575 238 MLSLLYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 238 ll~~~~~~~~~~~~~l~~~~i~~~~ 262 (263)
|+++..++ +..+++++|.+++
T Consensus 238 ll~~~~~~----~~~l~~~~i~~~~ 258 (450)
T 3gw9_A 238 LLSAVYRD----GTPMSLHEVCGMI 258 (450)
T ss_dssp HHHCBCTT----SCBCCHHHHHHHH
T ss_pred HHHhhccC----CCCCCHHHHHHHH
Confidence 99876544 4579999988765
No 9
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus}
Probab=99.97 E-value=3e-30 Score=212.80 Aligned_cols=236 Identities=15% Similarity=0.194 Sum_probs=176.1
Q ss_pred CchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchhhhhhhhcCccccccCCCChhHHHHHh
Q 041575 12 EPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRMAMEILGYNFLATPSSPYGSYWRETRK 91 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~Rk 91 (263)
++++..+.+|+++||||+++++|+.+.|+|+||+++++|+.++...|.+++..........+..+++++++|+.|+++||
T Consensus 43 ~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~~f~~r~~~~~~~~~~~~~~~l~~~~~g~~w~~~Rr 122 (496)
T 3qz1_A 43 PNLPIHLLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDFAGRPQIPSYKLVSQRCQDISLGDYSLLWKAHKK 122 (496)
T ss_dssp SCHHHHHHHGGGTSCSEEEECSSSSCEEEECSTTHHHHTTTTSCSTTCBCCCCTTTTTSCTTCCCSSSSCCSHHHHHHHH
T ss_pred CcchHHHHHHHHHhCCEEEEEeCCcCEEEECCHHHHHHHHHhCcHhhCCCCCcchHHHhcCCCCceEECCCCHHHHHHHH
Confidence 68999999999999999999999999999999999999998877788888765433333223236777766999999999
Q ss_pred HHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHHHHHHHHHHHccccCCCcchHHHHHHH
Q 041575 92 IATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRYTSQEGTDLHEHAA 171 (263)
Q Consensus 92 ~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~ 171 (263)
++.+ .|+...++.+.+.+.++++++++.|.+ ..+.++|+.+++..+++|+|+.++||. . ++..+....+
T Consensus 123 ~~~~-~f~~~~~~~~~~~i~~~~~~l~~~l~~------~~~~~vd~~~~~~~~~~dvi~~~~fG~-~---~~~~~~~~~~ 191 (496)
T 3qz1_A 123 LTRS-ALLLGTRSSMEPWVDQLTQEFCERMRV------QAGAPVTIQKEFSLLTCSIICYLTFGN-K---EDTLVHAFHD 191 (496)
T ss_dssp HHHH-HHHC--CCCHHHHHHHHHHHHHHHHHT------TCSCCCHHHHHHTHHHHHHTTTTSTTC-C---CHHHHHHHHH
T ss_pred HHHH-HHhhccHhhHHHHHHHHHHHHHHHHHh------cCCCccCHHHHHHHHHHHHHHHHhcCC-C---CChHHHHHHH
Confidence 9998 577666778999999999999999973 245689999999999999999999998 1 2223333333
Q ss_pred HHHHh---hhc--ccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHhcccccc
Q 041575 172 SFFTL---FGK--FVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSLLYDNA 246 (263)
Q Consensus 172 ~~~~~---~~~--~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~ 246 (263)
.+... ... ..+..++|+++++|. +..+++.+..+.+.+++.+.++++++....+ .++|+++.|+++..+..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~P~l~~lp~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~d~l~~ll~~~~~~~ 267 (496)
T 3qz1_A 192 CVQDLMKTWDHWSIQILDMVPFLRFFPN-PGLWRLKQAIENRDHMVEKQLRRHKESMVAG---QWRDMTDYMLQGVGRQR 267 (496)
T ss_dssp HHHTTTTTTSSHHHHHHHHCGGGCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHSCCSS---CCSSSHHHHTTSSTTCC
T ss_pred HHHHHHHHhccchhHHHHhHHHHHhCCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---CccchHHHHHHHHHhcc
Confidence 33222 222 223456788888873 3356677888889999999999988765433 34799999998765431
Q ss_pred ccCC-CCCchhhhhhhc
Q 041575 247 KQLP-DSDADTVIKALC 262 (263)
Q Consensus 247 ~~~~-~~l~~~~i~~~~ 262 (263)
.+.+ ..+++++|.+++
T Consensus 268 ~~~~~~~l~~~~i~~~~ 284 (496)
T 3qz1_A 268 VEEGPGQLLEGHVHMSV 284 (496)
T ss_dssp C-----CCCTHHHHHHH
T ss_pred ccCCcccccHHHHHHHH
Confidence 1112 379999988765
No 10
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Probab=99.97 E-value=7.9e-29 Score=203.36 Aligned_cols=246 Identities=17% Similarity=0.261 Sum_probs=169.9
Q ss_pred CcccccccCCCCchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchhhhhhhhcCccccccC
Q 041575 1 MIGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRMAMEILGYNFLATPSS 80 (263)
Q Consensus 1 llG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (263)
++||++++.. .+++..+.+|+++||||+++++|+.+.|+|+||+++++|+.++...|.+++..........+ .+++++
T Consensus 21 ~iG~~~~~~~-~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~il~~~~~~f~~~~~~~~~~~~~~~-~~l~~~ 98 (477)
T 1r9o_A 21 VIGNILQIGI-KDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGIFPLAERANRG-FGIVFS 98 (477)
T ss_dssp -----CCBCH-HHHHHHHHHHHHHHCSEEEEESSSCEEEEECSHHHHHHHHTTTTTTTCEECCCSCCCTTTCT-TSSTTC
T ss_pred eeccHhhcCC-CChHHHHHHHHHHhCCEEEEEECCCcEEEECCHHHHHHHHhcccHhhCCCCcchhhhhccCC-CceEec
Confidence 5789888732 57899999999999999999999889999999999999997666677766543211212122 366666
Q ss_pred CCChhHHHHHhHHHhhcCChh--HHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHHHHHHHHHHHcccc
Q 041575 81 PYGSYWRETRKIATVELLSNH--RLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRY 158 (263)
Q Consensus 81 ~~g~~w~~~Rk~~~~~~f~~~--~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~ 158 (263)
+|+.|+++||++.+ .|++. .++.+.+.+.++++.+++.|.+ ..+.++|+.+++..+++|+|+.++||.++
T Consensus 99 -~g~~w~~~Rr~~~~-~~~~~~~~~~~~~~~i~~~~~~l~~~l~~------~~~~~vd~~~~~~~~~~~vi~~~~fG~~~ 170 (477)
T 1r9o_A 99 -NGKKWKEIRRFSLM-TLRNFGMGKRSIEDRVQEEARCLVEELRK------TKASPCDPTFILGCAPCNVICSIIFHKRF 170 (477)
T ss_dssp -CHHHHHHHHHHHHH-HHTTSSSCSSCHHHHHHHHHHHHHHHHHT------TTTSCBCTHHHHHHHHHHHHHHHHHSCCC
T ss_pred -CChHHHHHHHHHHH-HHHHhCCChHHHHHHHHHHHHHHHHHHHh------cCCCccChHHHHHHHHHHHHHHHHccCcC
Confidence 49999999999997 57766 3467889999999999999973 22357999999999999999999999998
Q ss_pred CCCcchHHHHHHHHHHHhh---hcc--cccccccc-cccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Q 041575 159 TSQEGTDLHEHAASFFTLF---GKF--VVSDALPF-LRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDE 232 (263)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 232 (263)
+..+ .++....+.+...+ ... .+...+|+ ++++| ...++..+....+.+++.+.|+++++....+ .++
T Consensus 171 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~lp--~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~---~~~ 244 (477)
T 1r9o_A 171 DYKD-QQFLNLMEKLNENIKILSSPWIQICNNFSPIIDYFP--GTHNKLLKNVAFMKSYILEKVKEHQESMDMN---NPQ 244 (477)
T ss_dssp CTTC-HHHHHHHHHHHHHHHHHTCCBC-------CCCSCCT--TCHHHHHHHHHHHHHHHHHHHHHHHHTCCTT---CCC
T ss_pred CCCC-HHHHHHHHHHHHHHHhhccchhHHHhhccHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---Cch
Confidence 7533 34444443333222 111 12335675 45555 3335666777889999999999988753322 347
Q ss_pred cHHHHHHhccccccccCCCCCchhhhhhhc
Q 041575 233 DFIYVMLSLLYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 233 d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~ 262 (263)
|+++.|+....+.+.+.+..+++++|.+++
T Consensus 245 d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~ 274 (477)
T 1r9o_A 245 DFIDCFLMKMEKEKHNQPSEFTIESLENTA 274 (477)
T ss_dssp SHHHHHHHHHHHHTTSCSCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCCCCCHHHHHHHH
Confidence 999999965432211124569999998775
No 11
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=99.97 E-value=1.4e-29 Score=206.94 Aligned_cols=235 Identities=16% Similarity=0.186 Sum_probs=178.1
Q ss_pred CcccccccCCCCchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchh-hhhhhhcCcccccc
Q 041575 1 MIGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRM-AMEILGYNFLATPS 79 (263)
Q Consensus 1 llG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 79 (263)
||||++++. ++++.++.+|+++|||||++++|+.++|+|+||+++++|+.++...|..++... ......+ .++++
T Consensus 22 ~iG~~~~~~--~~~~~~~~~~~~kYG~i~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~~~~~~g--~~~~~ 97 (461)
T 3ld6_A 22 FLGHAIAFG--KSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTPVFG--KGVAY 97 (461)
T ss_dssp TTBTHHHHH--HCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHHHHHHHC--TTSGG
T ss_pred eeeeHHHhh--hCHHHHHHHHHHHhCCEEEEEECCccEEEEeCHHHHHHHHhCCccccCCCcchhhhhhccCC--Ccccc
Confidence 589998887 789999999999999999999999999999999999999988777777766542 2222222 25566
Q ss_pred CCCChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHHHHHHHHHHHccccC
Q 041575 80 SPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRYT 159 (263)
Q Consensus 80 ~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~~ 159 (263)
..+|+.|+++|+++.+ .|+...++.+.+.+.+.+.++++.|. .+..+|+.+.+..+++++++.++||.+++
T Consensus 98 ~~~~~~~~~~R~~~~~-~f~~~~l~~~~~~i~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~~~~fG~~~~ 168 (461)
T 3ld6_A 98 DVPNPVFLEQKKMLKS-GLNIAHFKQHVSIIEKETKEYFESWG--------ESGEKNVFEALSELIILTASHCLHGKEIR 168 (461)
T ss_dssp GSCHHHHHHHHHHHHH-HSSHHHHHHHHHHHHHHHHHHGGGGC--------SEEEEEHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHhccc-cccHHHHhhhhHHHHHHHHHHHHHHh--------hcCCccHHHHHHHHHHHHHHHHHcCcchh
Confidence 5569999999999998 79999999999999999999998885 23378999999999999999999998876
Q ss_pred CCcchHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHH
Q 041575 160 SQEGTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVML 239 (263)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll 239 (263)
....+.+......+...+.. ....+|. ++|... ..+..++.+.+.+++.+.|++++... ...+|+++.|+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~-~~~~~~~~~~l~~~~~~~i~~r~~~~-----~~~~d~l~~ll 238 (461)
T 3ld6_A 169 SQLNEKVAQLYADLDGGFSH--AAWLLPG--WLPLPS-FRRRDRAHREIKDIFYKAIQKRRQSQ-----EKIDDILQTLL 238 (461)
T ss_dssp HTCCHHHHHHHHHHHTTSSH--HHHHSCT--TSCCHH-HHHHHHHHHHHHHHHHHHHHHHTTCC-----CCCCSHHHHHH
T ss_pred hhhhhhhhhhhhhhhhhhhh--HHHhhhh--hccCcH-HHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCcchhhhhH
Confidence 53344444444444333221 1122332 344223 45566777888889998888876532 23479999999
Q ss_pred hccccccccCCCCCchhhhhhhc
Q 041575 240 SLLYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 240 ~~~~~~~~~~~~~l~~~~i~~~~ 262 (263)
++..++ +..++++||.+++
T Consensus 239 ~~~~~~----~~~ls~~ei~~~~ 257 (461)
T 3ld6_A 239 DATYKD----GRPLTDDEVAGML 257 (461)
T ss_dssp TCBCTT----SCBCCHHHHHHHH
T ss_pred Hhhhcc----cCCCCHHHHHHHH
Confidence 887665 5689999998765
No 12
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=99.96 E-value=8.3e-28 Score=197.57 Aligned_cols=241 Identities=16% Similarity=0.203 Sum_probs=174.8
Q ss_pred CcccccccC---CCCchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchh---hhhhhhcCc
Q 041575 1 MIGHLHLFG---GPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRM---AMEILGYNF 74 (263)
Q Consensus 1 llG~~~~~~---~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~ 74 (263)
++||++++. ..++++..+.+|+++|||||++++|+.+.|+++||+++++|+.+ ...|.+++... ........+
T Consensus 34 ~iG~~~~~~~~~~~~~~~~~~~~l~~~YG~i~~~~~g~~~~vvv~dp~~~~~il~~-~~~~~~r~~~~~~~~~~~~~~~~ 112 (482)
T 3k9v_A 34 LLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEALYRT-ESAHPQRLEIKPWKAYRDHRNEA 112 (482)
T ss_dssp TTBTHHHHHHTTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHT-CCSSCCCCCCHHHHHHHHHHTCC
T ss_pred ccccHHHHhccCCcccHHHHHHHHHHHcCCEEEEccCCCCEEEEcCHHHHHHHHHh-cCCCCCCCCchHHHHHHHhcCCC
Confidence 578887762 11468999999999999999999999999999999999999976 45677776432 111122223
Q ss_pred cccccCCCChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHHHHHHHHHHH
Q 041575 75 LATPSSPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIE 154 (263)
Q Consensus 75 ~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~f 154 (263)
.++++.+ |+.|+++||++.+.+++...++.+.+.+.++++.+++.|.+.+ ...++++|+.+++..+++|+|+.++|
T Consensus 113 ~~l~~~~-g~~w~~~Rr~~~~~f~~~~~~~~~~~~i~~~~~~l~~~l~~~~---~~~g~~vd~~~~~~~~t~dvi~~~~f 188 (482)
T 3k9v_A 113 YGLMILE-GQEWQRVRSAFQKKLMKPVEIMKLDKKINEVLADFLERMDELC---DERGRIPDLYSELNKWSFESICLVLY 188 (482)
T ss_dssp CCTTTCC-HHHHHHHHHHHHHHHTCHHHHGGGHHHHHHHHHHHHHHHHHHC---CTTSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCceeCC-CchHHHHHHHhhHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 3666665 9999999999998656888899999999999999999998643 12345899999999999999999999
Q ss_pred ccccCCCc------chHHHHHHHHHHHhhhccccccccc--ccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 041575 155 GKRYTSQE------GTDLHEHAASFFTLFGKFVVSDALP--FLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSS 226 (263)
Q Consensus 155 G~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 226 (263)
|.+++..+ ..++.+.+..+...... ...+| +..+++ ....+...+..+.+.+++.+.|++++++...+
T Consensus 189 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ 264 (482)
T 3k9v_A 189 EKRFGLLQKETEEEALTFITAIKTMMSTFGK---MMVTPVELHKRLN-TKVWQAHTLAWDTIFKSVKPCIDNRLQRYSQQ 264 (482)
T ss_dssp SCCCCSSSTTSTTSSHHHHHHHHHHHTTGGG---GSSSCHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccccCCCCCCcchHHHHHHHHHHHHHHHHHH---HHhhhHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99996521 23455555554443322 22233 334444 22234555666778888889999888664432
Q ss_pred CCCCCCcHHHHHHhccccccccCCCCCchhhhhhhc
Q 041575 227 EVEGDEDFIYVMLSLLYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 227 ~~~~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~ 262 (263)
...|+++.++.. ..+++++|.+++
T Consensus 265 ---~~~d~l~~ll~~---------~~l~~~ei~~~~ 288 (482)
T 3k9v_A 265 ---PGADFLCDIYQQ---------DHLSKKELYAAV 288 (482)
T ss_dssp ---TTSCHHHHHHHH---------TCCCHHHHHHHH
T ss_pred ---CchHHHHHHHhc---------cCCCHHHHHHHH
Confidence 336888888863 248888888765
No 13
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...
Probab=99.96 E-value=3.1e-27 Score=193.49 Aligned_cols=242 Identities=12% Similarity=0.078 Sum_probs=172.0
Q ss_pred CcccccccCCCCchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchhhhhhhhcCccccccC
Q 041575 1 MIGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRMAMEILGYNFLATPSS 80 (263)
Q Consensus 1 llG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (263)
++||++++.. .+++..+.+|+++||||+++++++.+.|+|+||+++++|+.+ ..|.+.+...........+.+++++
T Consensus 13 ~iG~l~~~~~-~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~~~~~~~il~~--~~f~~~~~~~~~~~~~~~~~~l~~~ 89 (470)
T 2ij2_A 13 ELKNLPLLNT-DKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDE--SRFDKNLSQALKFVRDFAGDGLFTS 89 (470)
T ss_dssp GGTTGGGGCS-SCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHTCT--TTEEECCCHHHHHHHHHHTTSGGGS
T ss_pred ccccHHHHhc-ccchHHHHHHHHHhCCeEEEecCCccEEEECCHHHHHHHHhh--cCcCcCchhHHHHHHHhcCCceEEc
Confidence 4799988853 578899999999999999999999999999999999999953 2343222111111111111256665
Q ss_pred -CCChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHHHHHHHHHHHccccC
Q 041575 81 -PYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRYT 159 (263)
Q Consensus 81 -~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~~ 159 (263)
.+|+.|+++||+++| .|++.+++.+.+.+.++++++++.|.+ ...+.++|+.+++..+++|+|+.++||.+++
T Consensus 90 ~~~g~~w~~~Rr~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~~-----~~~~~~vd~~~~~~~~~~~vi~~~~fG~~~~ 163 (470)
T 2ij2_A 90 WTHEKNWKKAHNILLP-SFSQQAMKGYHAMMVDIAVQLVQKWER-----LNADEHIEVPEDMTRLTLDTIGLCGFNYRFN 163 (470)
T ss_dssp CTTSHHHHHHHHHHGG-GGSTTTHHHHHHHHHHHHHHHHHHHHT-----CCTTCCEEHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred CCCchHHHHHHHHhcc-ccCHHHHHHHHHHHHHHHHHHHHHHHh-----hCCCCeEEHHHHHHHHHHHHHHHHHcCCccc
Confidence 469999999999998 789999999999999999999999973 2234579999999999999999999999986
Q ss_pred CC---cchHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHH
Q 041575 160 SQ---EGTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIY 236 (263)
Q Consensus 160 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~ 236 (263)
.. +...+...+...+....... ...|++.+++ ....+.+.+..+.+.+++.+.|+++++... .++|+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~-----~~~dll~ 235 (470)
T 2ij2_A 164 SFYRDQPHPFITSMVRALDEAMNKL--QRANPDDPAY-DENKRQFQEDIKVMNDLVDKIIADRKASGE-----QSDDLLT 235 (470)
T ss_dssp GGGCSSCCHHHHHHHHHHHHHHHTC-----CTTSGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCSSHHH
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHH--hhhhhHhhcc-chHHHHHHHHHHHHHHHHHHHHHHHHhccc-----CchhHHH
Confidence 52 22344444444433222111 1124444443 122345566777889999999998876521 3469999
Q ss_pred HHHhccccccccCCCCCchhhhhhhc
Q 041575 237 VMLSLLYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 237 ~ll~~~~~~~~~~~~~l~~~~i~~~~ 262 (263)
.|+++..+. .+..+++++|.+++
T Consensus 236 ~ll~~~~~~---~~~~ls~~ei~~~~ 258 (470)
T 2ij2_A 236 HMLNGKDPE---TGEPLDDENIRYQI 258 (470)
T ss_dssp HHHHCCCTT---TCCCCCHHHHHHHH
T ss_pred HHHhccCcc---cCCCCCHHHHHHHH
Confidence 999875432 14579999998765
No 14
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A*
Probab=99.96 E-value=1.7e-29 Score=207.80 Aligned_cols=244 Identities=13% Similarity=0.191 Sum_probs=164.0
Q ss_pred CcccccccCCCCchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhC-CccccCCcchhhhhhhhcCcccccc
Q 041575 1 MIGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTN-DKALASRPRRMAMEILGYNFLATPS 79 (263)
Q Consensus 1 llG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (263)
++||++++. .+++..+.+|+++|||||++++|+.++|+|+||+++++|+.++ ...|.+++........+ .++++
T Consensus 24 liGn~~~~~--~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~~f~~r~~~~~~~~~~---~~l~~ 98 (485)
T 3nxu_A 24 FLGNILSYH--KGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPVGFMK---SAISI 98 (485)
T ss_dssp TTBTGGGGG--GCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTTTTTTTCCCCCCCSCCGGGG---GSTTT
T ss_pred eecCcHHhh--cChHHHHHHHHHHcCCeEEEEeCCCCEEEECCHHHHHHHHhccchhhccCCcccccccccc---cCccc
Confidence 689999987 6789999999999999999999999999999999999999776 46676665433222222 25555
Q ss_pred CCCChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHHHHHHHHHHHccccC
Q 041575 80 SPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRYT 159 (263)
Q Consensus 80 ~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~~ 159 (263)
. +|+.|+++|++++| .|++.+++.+.+.+.++++.+++.|.+.+ ..+.++|+.+++..+++|+|+.++||.+++
T Consensus 99 ~-~g~~w~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~~~~----~~g~~~d~~~~~~~~~~dvi~~~~fG~~~~ 172 (485)
T 3nxu_A 99 A-EDEEWKRLRSLLSP-TFTSGKLKEMVPIIAQYGDVLVRNLRREA----ETGKPVTLKDVFGAYSMDVITSTSFGVNID 172 (485)
T ss_dssp C-CHHHHHHHHHHHGG-GGCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHTCCEEHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred c-CCcHHHHHHhhcCh-hcCHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCCcCcHHHHHHHHHHHHHHHHHcCCccc
Confidence 5 49999999999998 79999999999999999999999997532 134589999999999999999999999987
Q ss_pred CCc--chHHHHHHHHHHHhhhc---cccccccccc----ccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Q 041575 160 SQE--GTDLHEHAASFFTLFGK---FVVSDALPFL----RWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEG 230 (263)
Q Consensus 160 ~~~--~~~~~~~~~~~~~~~~~---~~~~~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 230 (263)
..+ .+.+.+.+......... ......+|++ .+++..... ......+.+++++.++++.+.. ...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~ 245 (485)
T 3nxu_A 173 SLNNPQDPFVENTKKLLRFDFLDPFFLSITVFPFLIPILEVLNICVFP---REVTNFLRKSVKRMKESRLEDT----QKH 245 (485)
T ss_dssp GGGCTTCHHHHHHTTSCCCCTTSHHHHHHHHCTTHHHHHHHTTCCSSC---HHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred cccCCCcHHHHHHHHHhchhhHHHHHHHHHHhhhhHHHHHHhhhhhch---HHHHHHHHHHHHHHHHHHHhcc----CCC
Confidence 622 23333333222211100 0011223432 222211111 1223344555555555543321 123
Q ss_pred CCcHHHHHHhccccccccCCCCCchhhhhhhc
Q 041575 231 DEDFIYVMLSLLYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 231 ~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~ 262 (263)
..|+++.|+++..+.....+..++++||.+++
T Consensus 246 ~~d~l~~ll~~~~~~~~~~~~~l~~~ei~~~~ 277 (485)
T 3nxu_A 246 RVDFLQLMIDSQNSKETESHKALSDLELVAQS 277 (485)
T ss_dssp CCCHHHHHHHHHC--------CCCHHHHHHHH
T ss_pred cccHHHHHHHhhhccccccccCCCHHHHHHHH
Confidence 47999999987544322234579999998765
No 15
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=99.96 E-value=2.9e-27 Score=194.63 Aligned_cols=239 Identities=15% Similarity=0.128 Sum_probs=161.9
Q ss_pred CchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchhhh---hhhhcCccccccCCCChhHHH
Q 041575 12 EPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRMAM---EILGYNFLATPSSPYGSYWRE 88 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~w~~ 88 (263)
..++..+.+|+++|||||++++|+.+.|+|+||+++++||.++ ..|.+++..... ......+.++++. +|+.|++
T Consensus 32 ~~~~~~~~~l~~kYG~i~~~~~g~~~~vvv~dp~~~~~il~~~-~~f~~r~~~~~~~~~~~~~~~~~~l~~~-~g~~w~~ 109 (487)
T 3n9y_A 32 HKVHLHHVQNFQKYGPIYREKLGNVESVYVIDPEDVALLFKSE-GPNPERFLIPPWVAYHQYYQRPIGVLLK-KSAAWKK 109 (487)
T ss_dssp GGHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHHTC-CSSCCCCCCHHHHHHHHHTTCCCCGGGC-CHHHHHH
T ss_pred cchhHHHHHHHHHcCceeeccCCCCCEEEEcCHHHHHHHHHhC-CCCCCCCCCcHHHHHHHHccccCCCccC-CcHHHHH
Confidence 4678899999999999999999999999999999999999655 467777643211 1122222356665 5999999
Q ss_pred HHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHHHHHHHHHHHccccCCCc---chH
Q 041575 89 TRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRYTSQE---GTD 165 (263)
Q Consensus 89 ~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~~~~~---~~~ 165 (263)
+|+++++++|+..+++.+.+.+.++++++++.|.+.+.....++.++|+.+++..+++|+|+.++||.+++..+ ...
T Consensus 110 ~Rr~l~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~~~~~~~~~~~~ 189 (487)
T 3n9y_A 110 DRVALNQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDISDDLFRFAFESITNVIFGERQGMLEEVVNPE 189 (487)
T ss_dssp HHHHHHHHHTSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSSSEEECCHHHHHHHHHHHHHHHHHSSCCCTTSSSCCHH
T ss_pred HHHhcCcccCCchHHHHhhhHHHHHHHHHHHHHHHHhcccccCCCCccHHHHHHHHHHHHHHHHHhcccccccCCCCChH
Confidence 99999986699999999999999999999999975432222345689999999999999999999999997621 122
Q ss_pred HHHHHHHHHHhhhcccccccccc--cccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCC--CCCCCCCcHHHHHHhc
Q 041575 166 LHEHAASFFTLFGKFVVSDALPF--LRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGS--SEVEGDEDFIYVMLSL 241 (263)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~d~l~~ll~~ 241 (263)
.......+...+........+|. +++++ ....+...+....+.+++.+.++++.++... .......|+++.|++.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~l~~ll~~ 268 (487)
T 3n9y_A 190 AQRFIDAIYQMFHTSVPMLNLPPDLFRLFR-TKTWKDHVAAWDVIFSKADIYTQNFYWELRQKGSVHHDYRGILYRLLGD 268 (487)
T ss_dssp HHHHHHHHHHHHHHHGGGTTSCHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCSSCCCHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHhhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhc
Confidence 22222222222221112223342 33343 1223334444455566666666655433211 1112346999999963
Q ss_pred cccccccCCCCCchhhhhhhc
Q 041575 242 LYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 242 ~~~~~~~~~~~l~~~~i~~~~ 262 (263)
..+++++|.+++
T Consensus 269 ---------~~l~~~ei~~~~ 280 (487)
T 3n9y_A 269 ---------SKMSFEDIKANV 280 (487)
T ss_dssp ---------CSSCHHHHHHHH
T ss_pred ---------CCCCHHHHHHHH
Confidence 258888888765
No 16
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* 4enh_A* 4fia_A*
Probab=99.96 E-value=1.2e-26 Score=189.44 Aligned_cols=232 Identities=14% Similarity=0.183 Sum_probs=167.7
Q ss_pred CchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchh--hhhhhhc--CccccccCCCChhHH
Q 041575 12 EPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRM--AMEILGY--NFLATPSSPYGSYWR 87 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~g~~w~ 87 (263)
+.+|..+.+|+++|||||++++|+.+.|+|+||+++++||.+ ..|.+++... .....+. .+.++++..+|+.|+
T Consensus 10 ~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~p~~~~~il~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~w~ 87 (456)
T 3mdm_A 10 RVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMS--TKYNKDSKMYRALQTVFGERLFGQGLVSECNYERWH 87 (456)
T ss_dssp CCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTC--TTSCCCHHHHHHHHEETTEESSTTSTTTCCCHHHHH
T ss_pred chHHHHHHHHHHHhCCeEEEEeCCCCEEEECCHHHHHHHHhh--ccccccchhHHHHHHhhcccccCCCcccCCChHHHH
Confidence 678999999999999999999999999999999999999953 3444444321 1111111 123566665699999
Q ss_pred HHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHHHHHHHHHHHccccCCC--cchH
Q 041575 88 ETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRYTSQ--EGTD 165 (263)
Q Consensus 88 ~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~~~~--~~~~ 165 (263)
++||++++ .|++.+++.+.+.+.++++.+++.|.+. ..++.++|+.+++..+++|+|+.++||.+++.. ....
T Consensus 88 ~~Rr~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~~~----~~~~~~vd~~~~~~~~~~dvi~~~~fG~~~~~~~~~~~~ 162 (456)
T 3mdm_A 88 KQRRVIDL-AFSRSSLVSLMETFNEKAEQLVEILEAK----ADGQTPVSMQDMLTYTAMDILAKAAFGMETSMLLGAQKP 162 (456)
T ss_dssp HHHHHHGG-GGSHHHHHTTHHHHHHHHHHHHHHHHHT----CSSSSCEEHHHHHHHHHHHHHHHHHHSCCCCGGGTCCHH
T ss_pred HHHhhccc-ccCHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCCeeeHHHHHHHHHHHHHHHHHcCCChhhhcccccH
Confidence 99999998 7999999999999999999999999753 234468999999999999999999999998762 2244
Q ss_pred HHHHHHHHHHhhhcccccccccccccccCc-ccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHhcccc
Q 041575 166 LHEHAASFFTLFGKFVVSDALPFLRWLDIG-GNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSLLYD 244 (263)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~~~~~ 244 (263)
+...+..+...+... ..|++.++|.. ...+...+....+.+++.+.++++++....+. ..+.|+++.++.+..
T Consensus 163 ~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~-~~~~d~l~~ll~~~~- 236 (456)
T 3mdm_A 163 LSQAVKLMLEGITAS----RNTLAKFLPGKRKQLREVRESIRFLRQVGRDWVQRRREALKRGE-EVPADILTQILKAEE- 236 (456)
T ss_dssp HHHHHHHHHHHHHHH----HHSCGGGCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCCCHHHHHHHHTS-
T ss_pred HHHHHHHHHHHHHHH----HHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchhhHHHHHHHhcC-
Confidence 555555554433221 13444555521 11234455667788888888988877654332 234699999998642
Q ss_pred ccccCCCCCchhhhhhhc
Q 041575 245 NAKQLPDSDADTVIKALC 262 (263)
Q Consensus 245 ~~~~~~~~l~~~~i~~~~ 262 (263)
..+++++|.+++
T Consensus 237 ------~~~~~~~l~~~~ 248 (456)
T 3mdm_A 237 ------GAQDDEGLLDNF 248 (456)
T ss_dssp ------SCSSSHHHHHHH
T ss_pred ------CCCCHHHHHHHH
Confidence 247888887664
No 17
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=99.95 E-value=5.1e-27 Score=193.88 Aligned_cols=241 Identities=14% Similarity=0.130 Sum_probs=171.6
Q ss_pred CcccccccCCC--CchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchh-hhhhhhcCcccc
Q 041575 1 MIGHLHLFGGP--EPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRM-AMEILGYNFLAT 77 (263)
Q Consensus 1 llG~~~~~~~~--~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 77 (263)
++||++++... ..++..+.+|+++||||+++++|+.+.|+++||+++++++.+ ..|.+++... .....+..+.++
T Consensus 55 ~iGnl~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~il~~--~~~~~r~~~~~~~~~~~~~~~~~ 132 (503)
T 3s79_A 55 GIGPLISHGRFLWMGIGSACNYYNRVYGEFMRVWISGEETLIISKSSSMFHIMKH--NHYSSRFGSKLGLQCIGMHEKGI 132 (503)
T ss_dssp SSHHHHHHHHHHHHCHHHHHHHHHHHSCSEEEEESSSSEEEEECCHHHHHHHHHS--GGGCCCCCCHHHHHHHTCTTSSS
T ss_pred eeeehhccccccccchhHHHHHHHHHhCCeEEEEeCCccEEEECCHHHHHHHHhc--CCCCCcchhhhhhhhhccCCCce
Confidence 57888776410 134568899999999999999999999999999999999953 3566665432 223333333466
Q ss_pred ccCCCChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHHHHHHHHHHHccc
Q 041575 78 PSSPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKR 157 (263)
Q Consensus 78 ~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~ 157 (263)
++..+|+.|+++|+++.+ .|+..+++.+.+.+.+++.++++.|.+.+ .++.++|+.+++..+++|+|+.++||.+
T Consensus 133 ~~~~~g~~w~~~Rr~~~~-~f~~~~l~~~~~~~~~~~~~~l~~l~~~~----~~~~~vdl~~~~~~~~~~vi~~~~fG~~ 207 (503)
T 3s79_A 133 IFNNNPELWKTTRPFFMK-ALSGPGLVRMVTVCAESLKTHLDRLEEVT----NESGYVDVLTLLRRVMLDTSNTLFLRIP 207 (503)
T ss_dssp TTCCCHHHHHHHHHHHHH-HTSTHHHHHHHHHHHHHHHHHHTTGGGTB----CTTSCBCHHHHHHHHHHHHHHHHHTCCC
T ss_pred eeCCCccHHHHHHHhhhH-hhChHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCeEcHHHHHHHHHHHHHHHHHcCcc
Confidence 777679999999999997 78999999999999999999999886422 2345799999999999999999999998
Q ss_pred cCCCcchHHHHHHHHHHHhhhcccc-cccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-CCCCcHH
Q 041575 158 YTSQEGTDLHEHAASFFTLFGKFVV-SDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEV-EGDEDFI 235 (263)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~d~l 235 (263)
++. .++...+...+........ ..+++ .++ ...+++.+..+.+.+++.+.|+++++....+.. ....|++
T Consensus 208 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l 279 (503)
T 3s79_A 208 LDE---SAIVVKIQGYFDAWQALLIKPDIFF---KIS--WLYKKYEKSVKDLKDAIEVLIAEKRRRISTEEKLEECMDFA 279 (503)
T ss_dssp CCH---HHHHHHHHHHHHHHHHHTTCCHHHH---HSG--GGTHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTTTTCCHH
T ss_pred cCc---hhHHHHHHHHHHHHHHHhcCcHHHh---hcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHH
Confidence 842 3333333333333221111 11111 122 123566677788999999999998876543321 1335999
Q ss_pred HHHHhccccccccCCCCCchhhhhhhc
Q 041575 236 YVMLSLLYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 236 ~~ll~~~~~~~~~~~~~l~~~~i~~~~ 262 (263)
+.|+++..+ ..+++++|.+++
T Consensus 280 ~~ll~~~~~------~~l~~~~i~~~~ 300 (503)
T 3s79_A 280 TELILAEKR------GDLTRENVNQCI 300 (503)
T ss_dssp HHHHHHHHT------TSSCHHHHHHHH
T ss_pred HHHHHhccc------CCCCHHHHHHHH
Confidence 999987533 368999988764
No 18
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=99.95 E-value=3.4e-26 Score=187.81 Aligned_cols=249 Identities=18% Similarity=0.266 Sum_probs=173.2
Q ss_pred CcccccccCCCCchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchhhhhhhhc--Cccccc
Q 041575 1 MIGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRMAMEILGY--NFLATP 78 (263)
Q Consensus 1 llG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 78 (263)
+|||++++.. .+++..+.+|+++|||||++++|+.++|+|+||+++++||.+++..|++|+.......++. ...+++
T Consensus 20 ~iGn~~~~~~-~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~i~~vl~~~~~~f~~r~~~~~~~~~~~~~~~~~~~ 98 (479)
T 3tbg_A 20 GLGNLLHVDF-QNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQILGFGPRSQGVF 98 (479)
T ss_dssp TTBTGGGCCT-TSHHHHHHHHHHHHCSEEEEEETTEEEEEEEHHHHHHHHHTTTGGGSCBCCCCGGGGGGTCBTTBCCST
T ss_pred cccchHhhcC-CCHHHHHHHHHHHhCCEEEEEECCeeEEEECCHHHHHHHHHhCChhhcCCCchHHHHHhccCCCCCcee
Confidence 6899998864 6889999999999999999999999999999999999999888888988886655444432 223567
Q ss_pred cCCCChhHHHHHhHHHhhcCChhHHH--HhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHHHHHHHHHHHcc
Q 041575 79 SSPYGSYWRETRKIATVELLSNHRLE--KLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGK 156 (263)
Q Consensus 79 ~~~~g~~w~~~Rk~~~~~~f~~~~l~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~ 156 (263)
++.+|+.|+++|+++.+ .|+...+. .+.+.+......+...+. ...+..+|+..++..+++|+++.++||.
T Consensus 99 ~~~~g~~w~~~R~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~fg~ 171 (479)
T 3tbg_A 99 LARYGPAWREQRRFSVS-TLRNLGLGKKSLEQWVTEEAACLCAAFA------NHSGRPFRPNGLLDKAVSNVIASLTCGR 171 (479)
T ss_dssp TCCSSHHHHHHHHHHHH-HHHHTTSTTCHHHHHHHHHHHHHHHHHH------TTTTCCBCTHHHHHHHHHHHHHHHHHSC
T ss_pred eCCCCHHHHHHHHHHHH-HhcchhhhHHHHHHHHHHHHHHHHHHHH------hccCCcccHHHHHHHHHHHHHHHhhcCC
Confidence 77779999999999998 56655443 345666666666666665 2345589999999999999999999999
Q ss_pred ccCCCcchHHHHHHHHHHHhh---hcc--cccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 041575 157 RYTSQEGTDLHEHAASFFTLF---GKF--VVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGD 231 (263)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 231 (263)
+++..+ .............. ... .....+|+..+++ ....+.....+...+++.+.+.++.+...... .+
T Consensus 172 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 246 (479)
T 3tbg_A 172 RFEYDD-PRFLRLLDLAQEGLKEESGFLREVLNAVPVLLHIP--ALAGKVLRFQKAFLTQLDELLTEHRMTWDPAQ--PP 246 (479)
T ss_dssp CCCTTC-HHHHHHHHHHHHHHHTTSSHHHHHHHHSGGGGGSH--HHHHHHTHHHHHHHHHHHHHHHHHHHHCCTTS--CC
T ss_pred cccccc-hhhhhhhhhhhhhhhhhhhhhhhhhcccchhccch--hhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--cc
Confidence 997733 23222222222221 111 1112234433332 22344455566777777888877776654432 34
Q ss_pred CcHHHHHHhccccccccCCCCCchhhhhhhc
Q 041575 232 EDFIYVMLSLLYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 232 ~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~ 262 (263)
.|+++.++........+.+..++++++.+++
T Consensus 247 ~d~~~~~~~~~~~~~~~~~~~l~~~~i~~~~ 277 (479)
T 3tbg_A 247 RDLTEAFLAEMEKAKGNPESSFNDENLRIVV 277 (479)
T ss_dssp CSHHHHHHHHHHHTTTCTTCSCSHHHHHHHH
T ss_pred chhhhhhhhhhhhcccCCccchhhHHHHHHH
Confidence 6888877765443333346789999998775
No 19
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A*
Probab=99.95 E-value=2.3e-26 Score=187.59 Aligned_cols=235 Identities=12% Similarity=0.138 Sum_probs=155.9
Q ss_pred CcccccccCCCCchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchhhhhhhhcCccccccC
Q 041575 1 MIGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRMAMEILGYNFLATPSS 80 (263)
Q Consensus 1 llG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (263)
++||++++. .+++..+.+|+++||||+++++++.++++|++|+++++|+.++...|++++.........+. ++ +.
T Consensus 15 ~iG~~~~~~--~~~~~~~~~l~~~yG~v~~~~~~~~~~~vv~~~~~~~~il~~~~~~~~~~~~~~~~~~~~g~--~~-~~ 89 (455)
T 2cib_A 15 EHGHLEEFR--TDPIGLMQRVRDELGDVGTFQLAGKQVVLLSGSHANEFFFRAGDDDLDQAKAYPFMTPIFGE--GV-VF 89 (455)
T ss_dssp TTBTHHHHT--TCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEECTTSCGGGHHHHC--------
T ss_pred CccCHHHHh--hChHHHHHHHHHHcCCEEEEEeCCceEEEECCHHHHHHHHhcCccccCcccchhHHHhhcCC--cc-cc
Confidence 589998886 67999999999999999999999999999999999999997665667666543222111111 33 34
Q ss_pred CCChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHHHHHHHHHHHccccCC
Q 041575 81 PYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRYTS 160 (263)
Q Consensus 81 ~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~~~ 160 (263)
+ |+.|+++|+++++ .|++.+++.+.+.+.++++++++.|. . +.++|+.+++..+++++|+.++||.+++.
T Consensus 90 ~-~~~~~~~R~~~~~-~f~~~~l~~~~~~i~~~~~~l~~~~~------~--~~~vd~~~~~~~~~~~vi~~~~fG~~~~~ 159 (455)
T 2cib_A 90 D-ASPERRKEMLHNA-ALRGEQMKGHAATIEDQVRRMIADWG------E--AGEIDLLDFFAELTIYTSSACLIGKKFRD 159 (455)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHHHHHTTCC------S--EEEEEHHHHHHHHHHHHHHHHHTCHHHHT
T ss_pred C-cHHHHHHHhhhcc-ccCHHHHHHHHHHHHHHHHHHHHHhC------C--CCcEeHHHHHHHHHHHHHHHHHcCCCcch
Confidence 4 9999999999997 79999999999999999999999874 1 24799999999999999999999998865
Q ss_pred CcchHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHh
Q 041575 161 QEGTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLS 240 (263)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~ 240 (263)
....++...+..+..... ....++|+ +|. ...++..++...+.+++.+.|+++++..... ...+|+++.|++
T Consensus 160 ~~~~~~~~~~~~~~~~~~--~~~~~~p~---l~~-~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~--~~~~dll~~ll~ 231 (455)
T 2cib_A 160 QLDGRFAKLYHELERGTD--PLAYVDPY---LPI-ESFRRRDEARNGLVALVADIMNGRIANPPTD--KSDRDMLDVLIA 231 (455)
T ss_dssp TCCHHHHHHHHHHHTTCC--GGGGTCTT---CSC-HHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CCCHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhhh--HHHHhccc---CCC-hhHHHHHHHHHHHHHHHHHHHHHHHhcccCC--CCcccHHHHHHH
Confidence 333456555555432211 12223453 332 1234556677788999999999887643211 112499999998
Q ss_pred ccccccccCCCC-Cchhhhhhhc
Q 041575 241 LLYDNAKQLPDS-DADTVIKALC 262 (263)
Q Consensus 241 ~~~~~~~~~~~~-l~~~~i~~~~ 262 (263)
+..++ +.. +++++|.+++
T Consensus 232 ~~~~~----~~~~l~~~~i~~~~ 250 (455)
T 2cib_A 232 VKAET----GTPRFSADEITGMF 250 (455)
T ss_dssp CBCTT----SSBSCCHHHHHHHH
T ss_pred hhhhc----CCCCCCHHHHHHHH
Confidence 75433 345 9999998765
No 20
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein, alternative splicing, cholesterol biosynthesis, endoplasmic reticulum, heme, iron; HET: HEM KLN BCD; 2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Probab=99.94 E-value=2.2e-26 Score=188.04 Aligned_cols=234 Identities=16% Similarity=0.220 Sum_probs=172.8
Q ss_pred CcccccccCCCCchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchh--hhhhhhcCccccc
Q 041575 1 MIGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRM--AMEILGYNFLATP 78 (263)
Q Consensus 1 llG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 78 (263)
++||++++. .+++.++.+|+++|||||++++++.+.|+|++|+++++++.++...+..++... ....++ .+++
T Consensus 22 ~iG~l~~~~--~~~~~~~~~~~~~yG~v~~l~l~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~g---~g~~ 96 (461)
T 3i3k_A 22 FLGHAIAFG--KSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTPVFG---KGVA 96 (461)
T ss_dssp TTBTHHHHH--HCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHHHHHHHC---TTSG
T ss_pred ccccHHhhc--cCHHHHHHHHHHHhCCEEEEEecCceEEEEeChHHHHHHHhccccccccchHHHHhhhhhcC---Ceee
Confidence 689998887 678999999999999999999999999999999999999977665555443221 112222 2566
Q ss_pred cCCCChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHHHHHHHHHHHcccc
Q 041575 79 SSPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRY 158 (263)
Q Consensus 79 ~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~ 158 (263)
+..+|+.|+.+|+++.+ .|+...++.+.+.+.+++.++++.|. .+..+|+.+.+..+++++++.++||.++
T Consensus 97 ~~~~g~~w~~~Rr~~~~-~f~~~~l~~~~~~~~~~~~~ll~~l~--------~~~~~dl~~~~~~~~~~~~~~~~~G~~~ 167 (461)
T 3i3k_A 97 YDVPNPVFLEQKKMLKS-GLNIAHFKQHVSIIEKETKEYFESWG--------ESGEKNVFEALSELIILTASHCLHGKEI 167 (461)
T ss_dssp GGSCHHHHHHHHHHHHH-HSSHHHHHHHHHHHHHHHHHHGGGGC--------SEEEEEHHHHHHHHHHHHHHHHHTCHHH
T ss_pred eCCCcHHHHHHHHHHhh-hhCHHHHHHHHHHHHHHHHHHHHHhh--------hcCCcCHHHHHHHHHHHHHHHHHccHhh
Confidence 66569999999999998 68999999999999999999999885 1235899999999999999999999877
Q ss_pred CCCcchHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHH
Q 041575 159 TSQEGTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVM 238 (263)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~l 238 (263)
.....+.+.+.+..+...+.. ...++| .|+|. ...++..+..+.+.+++.+.|+++++... ...|+++.|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~--~~~~~P--~~l~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~d~l~~l 237 (461)
T 3i3k_A 168 RSQLNEKVAQLYADLDGGFSH--AAWLLP--GWLPL-PSFRRRDRAHREIKDIFYKAIQKRRQSQE-----KIDDILQTL 237 (461)
T ss_dssp HHTCCHHHHHHHHHHHTTSSH--HHHHSC--TTSCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCC-----CCCSHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcccc--chhhcc--cccCC-HHHHHHHHHHHHHHHHHHHHHHHHHhccc-----ccccHHHHH
Confidence 442233444444333322111 112234 34442 22455667778888999999888765421 347999999
Q ss_pred HhccccccccCCCCCchhhhhhhc
Q 041575 239 LSLLYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 239 l~~~~~~~~~~~~~l~~~~i~~~~ 262 (263)
+++..++ +..+++++|.+++
T Consensus 238 l~~~~~~----~~~l~~~~i~~~~ 257 (461)
T 3i3k_A 238 LDATYKD----GRPLTDDEVAGML 257 (461)
T ss_dssp HTCBCTT----SCBCCHHHHHHHH
T ss_pred HHhhhcc----CCCCCHHHHHHHH
Confidence 9876544 4579999988765
No 21
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A*
Probab=99.94 E-value=8.7e-26 Score=183.65 Aligned_cols=227 Identities=17% Similarity=0.153 Sum_probs=164.2
Q ss_pred CcccccccCCCCchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchhhhhhhhcCccccccC
Q 041575 1 MIGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRMAMEILGYNFLATPSS 80 (263)
Q Consensus 1 llG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (263)
++||++.+. .+++ .+.+++++||||+++++++.+.++|+||+++++|+.++...|+.+........++. .++++.
T Consensus 22 ~iG~~~~~~--~~~~-~~~~~~~~yg~v~~~~~~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~~~~~~~g~--~~l~~~ 96 (444)
T 2ve3_A 22 WLGETLNFL--NDGD-FGKKRQQQFGPIFKTRLFGKNVIFISGALANRFLFTKEQETFQATWPLSTRILLGP--NALATQ 96 (444)
T ss_dssp TTBTHHHHH--HCTT-HHHHHHHHHCSSEEEEETTEEEEEECSHHHHHHHTSSCTTTEEEECCHHHHHHHCT--TSGGGC
T ss_pred ccccHHHHh--cCcH-HHHHHHHHcCCeEEEeeCCCCEEEEcCHHHHHHHHhCCCcccccchhHHHHHHhCc--cccccC
Confidence 578887765 3466 78899999999999998888899999999999999765555653322122223332 256665
Q ss_pred CCChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHHHHHHHHHHHccccCC
Q 041575 81 PYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRYTS 160 (263)
Q Consensus 81 ~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~~~ 160 (263)
+|+.|+++|+++.+ .|++.+++.+.+.+.++++++++.|.. +.++|+.+++..+++++|+.++|| +...
T Consensus 97 -~g~~~~~~R~~~~~-~f~~~~l~~~~~~i~~~~~~l~~~l~~--------~~~vd~~~~~~~~~~~vi~~~~fG-~~~~ 165 (444)
T 2ve3_A 97 -MGEIHRSRRKILYQ-AFLPRTLDSYLPKMDGIVQGYLEQWGK--------ANEVIWYPQLRRMTFDVAATLFMG-EKVS 165 (444)
T ss_dssp -CHHHHHHHHHHHHG-GGCHHHHHTTHHHHHHHHHHHHHHHHH--------SSEEEHHHHHHHHHHHHHHHHHTC-HHHH
T ss_pred -CchHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHHHHHhcC--------CCcEeHHHHHHHHHHHHHHHHHcC-CCcc
Confidence 49999999999998 789999999999999999999999952 237999999999999999999999 3322
Q ss_pred CcchHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHh
Q 041575 161 QEGTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLS 240 (263)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~ 240 (263)
.+ .++...+......... +|+ ++|... .++..++.+.+.+++.+.|+++++.. ...+|+++.|++
T Consensus 166 ~~-~~~~~~~~~~~~~~~~------~~~--~~p~~~-~~~~~~~~~~~~~~~~~~i~~r~~~~-----~~~~d~l~~ll~ 230 (444)
T 2ve3_A 166 QN-PQLFPWFETYIQGLFS------LPI--PLPNTL-FGKSQRARALLLAELEKIIKARQQQP-----PSEEDALGILLA 230 (444)
T ss_dssp SC-TTHHHHHHHHHHHHSS------CCC--CSTTSH-HHHHHHHHHHHHHHHHHHHHHHHTSC-----CCCSSHHHHHHH
T ss_pred cH-HHHHHHHHHHHHHHhc------CCc--cCCCcH-HHHHHHHHHHHHHHHHHHHHHHhcCC-----CCccCHHHHHHh
Confidence 22 4444444433332211 121 233212 34556677788899999999887641 134799999998
Q ss_pred ccccccccCCCCCchhhhhhhc
Q 041575 241 LLYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 241 ~~~~~~~~~~~~l~~~~i~~~~ 262 (263)
+..++ +..+++++|.+++
T Consensus 231 ~~~~~----~~~l~~~~i~~~~ 248 (444)
T 2ve3_A 231 ARDDN----NQPLSLPELKDQI 248 (444)
T ss_dssp CBCTT----SCBCCHHHHHHHH
T ss_pred ccccC----CCCCCHHHHHHHH
Confidence 75443 4579999998765
No 22
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1, molecular mechanism, heme, iron, metal-binding, monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor A3} PDB: 3el3_A*
Probab=99.94 E-value=3.3e-27 Score=193.23 Aligned_cols=232 Identities=14% Similarity=0.188 Sum_probs=143.6
Q ss_pred CcccccccCCCCchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCc-chhh-hhhhhcCccccc
Q 041575 1 MIGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRP-RRMA-MEILGYNFLATP 78 (263)
Q Consensus 1 llG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~ 78 (263)
++||++++. .+++.++.++++ ||||+++++|+.++++|+||+++++|+.++ .|..++ .... ....+. .+++
T Consensus 33 ~iG~~~~~~--~~p~~~~~~l~~-yGpv~~~~~g~~~~~vv~~~~~i~~il~~~--~~~~~~~~~~~~~~~~g~--~~l~ 105 (467)
T 3dbg_A 33 LLGHGWRLA--RDPLAFMSQLRD-HGDVVRIKLGPKTVYAVTNPELTGALALNP--DYHIAGPLWESLEGLLGK--EGVA 105 (467)
T ss_dssp TTHHHHHHH--HCHHHHHHHHGG-GCSEEEEEETTEEEEEECSHHHHHHHHHCT--TC----------------------
T ss_pred cccchHHhc--cCHHHHHHHHHH-hCCEEEEEeCCccEEEECCHHHHHHHHhCc--CcccccchHHHHHHhcCC--CCcc
Confidence 578888886 688999999998 999999999999999999999999999765 453332 2211 122221 2555
Q ss_pred cCCCChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHHHHHHHHHHHcccc
Q 041575 79 SSPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRY 158 (263)
Q Consensus 79 ~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~ 158 (263)
+. +|+.|+++|+++++ .|++.+++.+.+.+.++++++++.|. .+.++|+.+.+..+++++|+.++||.++
T Consensus 106 ~~-dg~~h~~~R~~l~~-~fs~~~l~~~~~~i~~~~~~l~~~l~--------~~~~~d~~~~~~~~~~~vi~~~~~g~~~ 175 (467)
T 3dbg_A 106 TA-NGPLHRRQRRTIQP-AFRLDAIPAYGPIMEEEAHALTERWQ--------PGKTVDATSESFRVAVRVAARCLLRGQY 175 (467)
T ss_dssp -----------CGGGHH-HHSTTTSTTTHHHHHHHHHHHHHHSC--------TTSCEEHHHHHHHHHHHHHHHHHSCSSC
T ss_pred cC-CcHHHHHHHHHhhh-hhCHHHHHHHHHHHHHHHHHHHHHhc--------cCCcCcHHHHHHHHHHHHHHHHHhCCcc
Confidence 55 49999999999998 78999999999999999999999985 2347999999999999999999999988
Q ss_pred CCCcchHHHHHHHHHHHhhhccccccccc--ccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHH
Q 041575 159 TSQEGTDLHEHAASFFTLFGKFVVSDALP--FLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIY 236 (263)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~ 236 (263)
+......+...+..+..... ...++| ++.++|. ...+++.+..+.+.+++.+.|+++++.. ..+.|+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~---~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~r~~~~-----~~~~dll~ 246 (467)
T 3dbg_A 176 MDERAERLCVALATVFRGMY---RRMVVPLGPLYRLPL-PANRRFNDALADLHLLVDEIIAERRASG-----QKPDDLLT 246 (467)
T ss_dssp CHHHHHHHHHHHHHHHHC----------------------------CCHHHHHHHHHHHHHHHTTCC-----SSCCSHHH
T ss_pred cchhHHHHHHHHHHHHHHHH---HHhccchhhhhhCCC-hHhHHHHHHHHHHHHHHHHHHHHHHhcC-----CCchHHHH
Confidence 54223344444444433221 122344 2344442 2234556667788889999998876531 13479999
Q ss_pred HHHhccccccccCCCCCchhhhhhhc
Q 041575 237 VMLSLLYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 237 ~ll~~~~~~~~~~~~~l~~~~i~~~~ 262 (263)
.|+++..++ +..+++++|.+++
T Consensus 247 ~ll~~~~~~----~~~ls~~ei~~~~ 268 (467)
T 3dbg_A 247 ALLEAKDDN----GDPIGEQEIHDQV 268 (467)
T ss_dssp HHTTC------------CHHHHHHHH
T ss_pred HHHhhccCC----CCCCCHHHHHHHH
Confidence 999876544 3479999998765
No 23
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid complex, riken structural genomics/proteomics initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Probab=99.93 E-value=1.3e-23 Score=169.48 Aligned_cols=223 Identities=9% Similarity=0.069 Sum_probs=159.8
Q ss_pred CcccccccCCCCchhHHHHHHHhhcC-CeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchh--hh-hhhhcCccc
Q 041575 1 MIGHLHLFGGPEPTHRILGNMANKYG-PIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRM--AM-EILGYNFLA 76 (263)
Q Consensus 1 llG~~~~~~~~~~~~~~~~~~~~~yG-~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~--~~-~~~~~~~~~ 76 (263)
++||++.+. .+++.++.+++++|| ||+++.+++.+.+++++|++++.++ + ...|.+++... .. ..++. .+
T Consensus 10 ~lG~~~~~~--~~p~~~~~~l~~~yg~pv~~~~~~g~~~v~v~~~~~~~~l~-~-~~~~~~~~~~~~~~~~~~~g~--~~ 83 (417)
T 1izo_A 10 SLDNSLTLL--KEGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFY-D-TDRFQRQNALPKRVQKSLFGV--NA 83 (417)
T ss_dssp CTTHHHHHH--HHGGGHHHHHHHHTTSSEEEEEETTEEEEEECSHHHHHHHT-C-TTTEECTTCSCHHHHTTTTCT--TC
T ss_pred ccchHHHHh--hCcHHHHHHHHHHhCCCeEEeecCCccEEEECCHHHHHHHh-c-ccccccccccccchhhhhccc--cc
Confidence 578888876 689999999999998 9999999889999999999998654 3 33454443221 11 12221 25
Q ss_pred cccCCCChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHHHHHHHHHHHcc
Q 041575 77 TPSSPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGK 156 (263)
Q Consensus 77 ~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~ 156 (263)
+++. +|+.|+++|+++++ .|++.+++.+.+.+.+.++++++.|. . +.++|+.+.+..+++++|+.+ ||.
T Consensus 84 l~~~-dg~~h~~~R~~~~~-~f~~~~l~~~~~~i~~~~~~l~~~l~------~--~~~~dl~~~~~~~~~~vi~~~-~G~ 152 (417)
T 1izo_A 84 IQGM-DGSAHIHRKMLFLS-LMTPPHQKRLAELMTEEWKAAVTRWE------K--ADEVVLFEEAKEILCRVACYW-AGV 152 (417)
T ss_dssp GGGC-CHHHHHHHHHHHHH-TSSHHHHHHHHHHHHHHHHHHHHHHT------T--SSEEEHHHHHHHHHHHHHHHH-HTC
T ss_pred eeec-CChHHHHHHHHhhh-hcCHHHHHHHHHHHHHHHHHHHHHHh------c--CCCeeHHHHHHHHHHHHHHHH-cCC
Confidence 5655 49999999999998 79999999999999999999999995 2 347999999999999999998 698
Q ss_pred ccCCCcchHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHH
Q 041575 157 RYTSQEGTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIY 236 (263)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~ 236 (263)
+++.. ++.+....+...+.... . ..| ......++.+.+.+++.++|+++++..... ..+|+++
T Consensus 153 ~~~~~---~~~~~~~~~~~~~~~~~-----~---~~~---~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~---~~~d~l~ 215 (417)
T 1izo_A 153 PLKET---EVKERADDFIDMVDAFG-----A---VGP---RHWKGRRARPRAEEWIEVMIEDARAGLLKT---TSGTALH 215 (417)
T ss_dssp CCCTT---THHHHHHHHHHHHHHTT-----C---CSH---HHHHHHHHHHHHHHHHHHHHHHHHTTSSCC---CTTSHHH
T ss_pred CCCch---HHHHHHHHHHHHHhhcc-----c---CCc---cchhHHHHHHHHHHHHHHHHHHHHhhccCC---CcCCHHH
Confidence 87542 23333333322222110 0 111 123455677888999999999988653221 3369999
Q ss_pred HHHhccccccccCCCCCchhhhhhh
Q 041575 237 VMLSLLYDNAKQLPDSDADTVIKAL 261 (263)
Q Consensus 237 ~ll~~~~~~~~~~~~~l~~~~i~~~ 261 (263)
.|+.+.+++ +..++++++...
T Consensus 216 ~ll~~~~~~----g~~l~~~~~~~~ 236 (417)
T 1izo_A 216 EMAFHTQED----GSQLDSRMAAIE 236 (417)
T ss_dssp HHHHCBCTT----SCBCCHHHHHHH
T ss_pred HHHHhcccc----CCCCCHHHHHHH
Confidence 999875443 456888766543
No 24
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase, oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas paucimobilis} PDB: 3awq_A* 3awp_A*
Probab=99.92 E-value=3e-23 Score=167.28 Aligned_cols=223 Identities=11% Similarity=0.087 Sum_probs=161.1
Q ss_pred CcccccccCCCCchhHHHHHHHhhc-CCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchh--hh-hhhhcCccc
Q 041575 1 MIGHLHLFGGPEPTHRILGNMANKY-GPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRM--AM-EILGYNFLA 76 (263)
Q Consensus 1 llG~~~~~~~~~~~~~~~~~~~~~y-G~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~--~~-~~~~~~~~~ 76 (263)
++||++++. .+++.++.+++++| |||+++.+++.+.+++++|++++ ++.+ ...|++++... .. ..++ ..+
T Consensus 9 ~iG~~~~~~--~~p~~~~~~l~~~y~gpv~~~~~~g~~~~vv~~~~~~~-~l~~-~~~f~~~~~~~~~~~~~~~g--~~~ 82 (415)
T 3awm_A 9 GPDETLSLL--ADPYRFISRQCQRLGANAFESRFLLKKTNCLKGAKAAE-IFYD-TTRFEREGAMPVAIQKTLLG--QGG 82 (415)
T ss_dssp CCCCHHHHH--HSTTTHHHHHHHHHTSSEEEEEETTEEEEEEESHHHHH-HHTC-TTTEECTTCSCHHHHTTTSC--SSS
T ss_pred ccchHHHHH--hChHHHHHHHHHHhCCCeEEEecCCCcEEEEeCHHHHH-HHhc-ccccccccccchhhhhhccC--Ccc
Confidence 589988876 67899999999999 79999998888999999999986 6644 34565543221 11 1222 125
Q ss_pred cccCCCChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHHHHHHHHHHHcc
Q 041575 77 TPSSPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGK 156 (263)
Q Consensus 77 ~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~ 156 (263)
++.. +|+.|+++|+++.+ .|++..++.+.+.+.+.++++++.|.+ +.++|+.+.+..+++++|+.+ ||.
T Consensus 83 l~~~-dg~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~ll~~~~~--------~~~vdl~~~~~~~~~~vi~~~-~G~ 151 (415)
T 3awm_A 83 VQGL-DGETHRHRKQMFMG-LMTPERVRALAQLFEAEWRRAVPGWTR--------KGEIVFYDELHEPLTRAVCAW-AGV 151 (415)
T ss_dssp GGGC-CHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHHHHHH--------HSEEEHHHHHHHHHHHHHHHH-HTC
T ss_pred eeec-CcHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHhhcc--------CCcEeHHHHHHHHHHHHHHHH-cCC
Confidence 5555 49999999999997 799999999999999999999999963 237999999999999999998 898
Q ss_pred ccCCCcchHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHH
Q 041575 157 RYTSQEGTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIY 236 (263)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~ 236 (263)
+++. .++......+...+... +. ..| ...+..++.+.+.+++.+.|+++++..... ..+|+++
T Consensus 152 ~~~~---~~~~~~~~~~~~~~~~~------~~--~~~---~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~---~~~d~l~ 214 (415)
T 3awm_A 152 PLPD---DEAGNRAGELRALFDAA------GS--ASP---RHLWSRLARRRVDAWAKRIIEGIRAGSIGS---GSGTAAY 214 (415)
T ss_dssp CCCG---GGHHHHHHHHHHHHHST------TC--SSH---HHHHHHHHHHHHHHHHHHHHHHHHHTSSCC---CTTSHHH
T ss_pred CCCc---chHHHHHHHHHHHHHHh------cc--cCc---hHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---CCCCHHH
Confidence 8744 23333333333322211 10 011 134456677889999999999988753221 3369999
Q ss_pred HHHhccccccccCCCCCchhhhhhh
Q 041575 237 VMLSLLYDNAKQLPDSDADTVIKAL 261 (263)
Q Consensus 237 ~ll~~~~~~~~~~~~~l~~~~i~~~ 261 (263)
.|+.+.+++ +..++++++...
T Consensus 215 ~ll~~~~~~----g~~~~~~~~~~~ 235 (415)
T 3awm_A 215 AIAWHRDRH----DDLLSPHVAAVE 235 (415)
T ss_dssp HHHHCBCTT----SCBCCHHHHHHH
T ss_pred HHHhhhhcc----CCCCCHHHHHHH
Confidence 999875443 456888866544
No 25
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding; HET: HEM PXI; 1.7A {Streptomyces venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Probab=99.91 E-value=1.6e-23 Score=169.65 Aligned_cols=215 Identities=11% Similarity=0.122 Sum_probs=156.1
Q ss_pred ccccc-ccCCCCchhHHHHHHHhhcCCeEEEEe-cCeeEEEecCHHHHHHHHhhCCccccCCcchhhhhhh---hcCccc
Q 041575 2 IGHLH-LFGGPEPTHRILGNMANKYGPIFTMKM-GVNRALVVSNSEITKECFTTNDKALASRPRRMAMEIL---GYNFLA 76 (263)
Q Consensus 2 lG~~~-~~~~~~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~ 76 (263)
+||+. .+. .+++..+.++ ++||||+++++ ++.++|+|+||+++++||.++ .|.+++........ .....+
T Consensus 37 lG~~~~~~~--~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~ 111 (436)
T 2cd8_A 37 LGALGQDFA--ADPYPTYARL-RAEGPAHRVRTPEGDEVWLVVGYDRARAVLADP--RFSKDWRNSTTPLTEAEAALNHN 111 (436)
T ss_dssp HHHHHHHHH--HCCHHHHHHH-HTTCSEEEEECSSCCEEEEECSHHHHHHHHHCT--TEECCGGGCSSCCCTTGGGTCCS
T ss_pred CCCCCcccc--cChHHHHHHH-HHhCCeeeeccCCCCeEEEEcCHHHHHHHHcCC--CCccccccccccccccccccccc
Confidence 56654 333 5678899999 89999999998 778899999999999999765 57666542111110 111235
Q ss_pred cccCCCChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHH-HHHHHHHHHHHHHc
Q 041575 77 TPSSPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWL-EGTTFDIIIRIIEG 155 (263)
Q Consensus 77 ~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG 155 (263)
+++. +|+.|+++|+++++ .|++.+++.+.+.+.++++++++.|.+ ..+.++|+.+++ ..+++++|+. +||
T Consensus 112 l~~~-dg~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~~------~~~~~vd~~~~~~~~~~~~vi~~-~~G 182 (436)
T 2cd8_A 112 MLES-DPPRHTRLRKLVAR-EFTMRRVELLRPRVQEIVDGLVDAMLA------APDGRADLMESLAWPLPITVISE-LLG 182 (436)
T ss_dssp GGGC-CTTHHHHHHHHHGG-GSSHHHHHTTHHHHHHHHHHHHHHHHT------CTTSCEEHHHHTTTHHHHHHHHH-HHT
T ss_pred cccc-CchHHHHHHHHhHH-hhCHHHHHHHHHHHHHHHHHHHHHHHh------ccCCCcchHHHHHHHHHHHHHHH-HhC
Confidence 6665 59999999999998 799999999999999999999999973 123579999977 5799999998 699
Q ss_pred cccCCCcchHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHH
Q 041575 156 KRYTSQEGTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFI 235 (263)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l 235 (263)
.+.+ +.+.+......+... . + . ++..++...+.+++.+.|+++++. ..+|++
T Consensus 183 ~~~~--~~~~~~~~~~~~~~~---------~------~--~--~~~~~~~~~~~~~~~~~i~~r~~~-------~~~d~l 234 (436)
T 2cd8_A 183 VPEP--DRAAFRVWTDAFVFP---------D------D--P--AQAQTAMAEMSGYLSRLIDSKRGQ-------DGEDLL 234 (436)
T ss_dssp CCGG--GHHHHHHHHHHHHSC---------S------S--T--THHHHHHHHHHHHHHHHHHHHTTS-------CCCSHH
T ss_pred CCHH--HHHHHHHHHHHHhcc---------C------C--H--HHHHHHHHHHHHHHHHHHHHHhcC-------CCCCHH
Confidence 8763 333444443332210 0 1 1 345566778888999999887652 236999
Q ss_pred HHHHhccccccccCCCCCchhhhhhhc
Q 041575 236 YVMLSLLYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 236 ~~ll~~~~~~~~~~~~~l~~~~i~~~~ 262 (263)
+.|+++..++ +..++++||.+++
T Consensus 235 ~~ll~~~~~~----~~~ls~~ei~~~~ 257 (436)
T 2cd8_A 235 SALVRTSDED----GSRLTSEELLGMA 257 (436)
T ss_dssp HHHHHHHHHC----TTTSCHHHHHHHH
T ss_pred HHHHHhhhcc----CCCCCHHHHHHHH
Confidence 9999875442 3579999998875
No 26
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Probab=99.91 E-value=3.7e-24 Score=171.13 Aligned_cols=191 Identities=14% Similarity=0.108 Sum_probs=140.2
Q ss_pred CcccccccCCCCchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCc-chhhhhhhhcCcccccc
Q 041575 1 MIGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRP-RRMAMEILGYNFLATPS 79 (263)
Q Consensus 1 llG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 79 (263)
++||++++. .+++..+.+|+++||||++ ++|+.++++++||+++++|+.++ .|.+++ .......+.+ .++++
T Consensus 9 ~iGnl~~~~--~~p~~~~~~l~~~yGpv~~-~~g~~~~vvv~~~~~i~~il~~~--~f~~~~~~~~~~~~~~g--~~l~~ 81 (389)
T 1n97_A 9 AWPYLKDLQ--QDPLAVLLAWGRAHPRLFL-PLPRFPLALIFDPEGVEGALLAE--GTTKATFQYRALSRLTG--RGLLT 81 (389)
T ss_dssp HHHHHHHHH--HCHHHHHHHHHHHCSEEEE-CCTTCCEEEECSHHHHHHHHHCT--TEECCSHHHHHHHHHHC--SSTTT
T ss_pred ccccHHHHh--hChHHHHHHHHHHcCCeeE-ecCCccEEEECCHHHHHHHHhcC--CCCCChhHHHHHHHHhC--Ccccc
Confidence 478888876 5789999999999999999 99888999999999999999765 777776 2222222222 35666
Q ss_pred CCCChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHHHHHHHHHHHccccC
Q 041575 80 SPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRYT 159 (263)
Q Consensus 80 ~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~~ 159 (263)
.+ |+.|+++|+++++ .|++.+++.+.+.+.+.++++++.|. +.++|+.+++..+++|+|+.++||.+++
T Consensus 82 ~~-g~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~---------~~~~dl~~~~~~~~~~vi~~~~fG~~~~ 150 (389)
T 1n97_A 82 DW-GESWKEARKALKD-PFLPKNVRGYREAMEEEARAFFGEWR---------GEERDLDHEMLALSLRLLGRALFGKPLS 150 (389)
T ss_dssp CC-HHHHHHHHHHHCG-GGSHHHHHTTHHHHHHHHHHHHHTCC---------SCCEEHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CC-cHHHHHHHHHhCc-ccCHHHHHHHHHHHHHHHHHHHHHcc---------CCcCcHHHHHHHHHHHHHHHHHcCCcch
Confidence 64 9999999999997 78999999999999999999998873 3479999999999999999999999885
Q ss_pred CCcchHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHH
Q 041575 160 SQEGTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDE 218 (263)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 218 (263)
+ ++.+.+..+...... ..++++.++|. ...++..++...+.+++.+.|++
T Consensus 151 --~--~~~~~~~~~~~~~~~----~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~i~~ 200 (389)
T 1n97_A 151 --P--SLAEHALKALDRIMA----QTRSPLALLDL-AAEARFRKDRGALYREAEALIVH 200 (389)
T ss_dssp --H--HHHHHHHHHHHHHHH----HHHCGGGGGCH-HHHHHHHHHHHHHHHHHGGGTTS
T ss_pred --H--HHHHHHHHHHHHHHH----HHhhHHHhcCC-chhHHHHHHHHHHHHHHHHHHHH
Confidence 2 555555555443321 11222245552 12234445555555565555543
No 27
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes teichomyceticus} SCOP: a.104.1.0 PDB: 3o1a_A*
Probab=99.91 E-value=1.4e-22 Score=161.82 Aligned_cols=205 Identities=10% Similarity=0.022 Sum_probs=152.8
Q ss_pred CchhHHHHHHHhhcCCeEEEEecC----eeEEEecCHHHHHHHHhhCCccccCCcchhhhhhhhcCccccccCCCChhHH
Q 041575 12 EPTHRILGNMANKYGPIFTMKMGV----NRALVVSNSEITKECFTTNDKALASRPRRMAMEILGYNFLATPSSPYGSYWR 87 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~~~----~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~ 87 (263)
.+++..+.+|+ +||||+++++++ .++++|+||+++++|+ ++...|++++............ +.++..+|+.|+
T Consensus 12 ~~p~~~~~~lr-~yGpv~~~~~~~~~~g~~~vvv~~~~~v~~vl-~~~~~f~~~~~~~~~~~~~~~~-~~~~~~~g~~~~ 88 (384)
T 3oo3_A 12 LDPVPEFEELQ-KAGPLHEYDTEPGMDGRKQWLVTGHDEVRAIL-ADHERFSSMRPVDDEADRALLP-GILQAYDPPDHT 88 (384)
T ss_dssp TEECHHHHHHH-HTCSEECCCCC------CEEEECCHHHHHHHH-HCTTTEECSCCCC-----CCCT-TCGGGCCTTHHH
T ss_pred cChhHHHHHHH-hcCCeeecccccccCCCCEEEEcCHHHHHHHH-hCchhccCCccccccccccccc-cccccCCChhHH
Confidence 78999999995 999999999876 7999999999999999 5556787777543222111222 334444599999
Q ss_pred HHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHHHHHHHHHHHccccCCCcchHHH
Q 041575 88 ETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRYTSQEGTDLH 167 (263)
Q Consensus 88 ~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~ 167 (263)
++|+++++ .|++.+++.+.+.+.+.++++++.|.+ .+.++|+.+.+...+.++++..+||.+.+ +.+.+.
T Consensus 89 ~~R~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~~-------~~~~~d~~~~~~~~~~~~v~~~~~G~~~~--~~~~~~ 158 (384)
T 3oo3_A 89 RLRRTVAP-AYSARRMERLRPRIEEIVEECLDDFES-------VGAPVDFVRHAAWPIPAYIACEFLGVPRD--DQAELS 158 (384)
T ss_dssp HHHHHHGG-GGCHHHHHHHHHHHHHHHHHHHHHHHH-------SCSSEEHHHHTTTHHHHHHHHHHHTCCGG--GHHHHH
T ss_pred HHHHHHHH-hhCHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCccHHHHHHHHHHHHHHHHHcCCCHH--HHHHHH
Confidence 99999997 799999999999999999999999963 23479999999998887777778998763 334444
Q ss_pred HHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHhccccccc
Q 041575 168 EHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSLLYDNAK 247 (263)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~ 247 (263)
..+..+.. . ...+...+....+.+++.+.|+++++. +.+|+++.|+++.
T Consensus 159 ~~~~~~~~----------------~---~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~d~l~~ll~~~----- 207 (384)
T 3oo3_A 159 RMIRESRE----------------S---RLPRQRTLSGLGIVNYTKRLTSGKRRD-------PGDGMIGVIVREH----- 207 (384)
T ss_dssp HHHHHHHH----------------C---SCHHHHHHHHHHHHHHHHHHHHHHHHS-------CCSSHHHHHHHHH-----
T ss_pred HHHHHHhc----------------c---CChHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCHHHHHHHhc-----
Confidence 44444332 0 113456677788899999999888753 3379999999862
Q ss_pred cCCCCCchhhhhhhc
Q 041575 248 QLPDSDADTVIKALC 262 (263)
Q Consensus 248 ~~~~~l~~~~i~~~~ 262 (263)
+..++++++.+++
T Consensus 208 --~~~l~~~~l~~~~ 220 (384)
T 3oo3_A 208 --GAEISDEELAGLA 220 (384)
T ss_dssp --GGGSCHHHHHHHH
T ss_pred --CCCCCHHHHHHHH
Confidence 2368999988765
No 28
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A {Pseudomonas SP} SCOP: a.104.1.1
Probab=99.91 E-value=5.8e-23 Score=166.19 Aligned_cols=221 Identities=10% Similarity=0.064 Sum_probs=152.1
Q ss_pred chhHHHHHHHhhcCCeEEEEe-cCeeEEEecCHHHHHHHHhhCCccccCCcc-hhhh-----h-h---hhc---Cccccc
Q 041575 13 PTHRILGNMANKYGPIFTMKM-GVNRALVVSNSEITKECFTTNDKALASRPR-RMAM-----E-I---LGY---NFLATP 78 (263)
Q Consensus 13 ~~~~~~~~~~~~yG~i~~~~~-~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~-~~~~-----~-~---~~~---~~~~~~ 78 (263)
+++..+.+|++ ||||+++++ |+.+.++|++|+++++++.+ ...|++++. ..+. . . .+. ...+++
T Consensus 26 ~p~~~~~~l~~-~gpv~~~~~~g~~~~vvv~~~~~v~~vl~~-~~~fs~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~ 103 (428)
T 1cpt_A 26 VIYPAFKWLRD-EQPLAMAHIEGYDPMWIATKHADVMQIGKQ-PGLFSNAEGSEILYDQNNEAFMRSISGGCPHVIDSLT 103 (428)
T ss_dssp HHHHHHHHHHH-HCSEEEECCTTSCCEEEECSHHHHHHHHHC-TTTEESSSSCSSCCCHHHHHHHHHHTTTSSCSSCCGG
T ss_pred CccHHHHHHHH-hCCeeeccccCCCCeEEEccHHHHHHHHcC-chhccCccccccCCcccccchhccccccccccccccc
Confidence 58889999987 799999998 67899999999999999954 456777764 2211 1 2 221 123566
Q ss_pred cCCCChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHH-HHHHHHHHHHHHHHccc
Q 041575 79 SSPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHW-LEGTTFDIIIRIIEGKR 157 (263)
Q Consensus 79 ~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~-~~~~~~~vi~~~~fG~~ 157 (263)
+.+ |+.|+++|+++++ .|++.+++.+.+.+.++++++++.|.+ . +.++|+... ...+++++|+.+ ||.+
T Consensus 104 ~~~-g~~~~~~Rr~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~~-----~--~~~~d~~~~~~~~~~~~vi~~~-fG~~ 173 (428)
T 1cpt_A 104 SMD-PPTHTAYRGLTLN-WFQPASIRKLEENIRRIAQASVQRLLD-----F--DGECDFMTDCALYYPLHVVMTA-LGVP 173 (428)
T ss_dssp GCC-TTHHHHHHHHHHT-TSSHHHHGGGHHHHHHHHHHHHHHHHT-----S--SSEEEHHHHTTTTHHHHHHHHH-HTCC
T ss_pred cCC-hHHHHHHHHHhhh-hhCHHHHHHHHHHHHHHHHHHHHHHHH-----h--CCCeehHHHHHhhhHHHHHHHH-cCCC
Confidence 665 9999999999997 799999999999999999999999973 1 247999855 567999999999 9987
Q ss_pred cCCCcchHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHH
Q 041575 158 YTSQEGTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYV 237 (263)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ 237 (263)
++ +.+.+......+..... .....+|++.+++ ..+.++..+....+.+++.+.|+++++. ..+|+++.
T Consensus 174 ~~--~~~~~~~~~~~~~~~~~--~~~~~~P~l~~~~-~~~~~~~~~~~~~~~~~~~~~i~~r~~~-------~~~dll~~ 241 (428)
T 1cpt_A 174 ED--DEPLMLKLTQDFFGVHE--PDEQAVAAPRQSA-DEAARRFHETIATFYDYFNGFTVDRRSC-------PKDDVMSL 241 (428)
T ss_dssp GG--GHHHHHHHHHTTTCC-------------------CHHHHHHHHHHHHHHHHHHHHHHHTTS-------CCSSHHHH
T ss_pred Hh--HHHHHHHHHHHHHhccc--ccccccccccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCcHHHH
Confidence 63 22334333332221111 1112345544432 1333566677788899999999887652 23699999
Q ss_pred HHhccccccccCCCCCchhhhhhhc
Q 041575 238 MLSLLYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 238 ll~~~~~~~~~~~~~l~~~~i~~~~ 262 (263)
|+++..+ +..++++||.+++
T Consensus 242 ll~~~~~-----~~~ls~~ei~~~~ 261 (428)
T 1cpt_A 242 LANSKLD-----GNYIDDKYINAYY 261 (428)
T ss_dssp HHHCBSS-----SSBCCHHHHHHHH
T ss_pred HHhcccc-----CCCCCHHHHHHHH
Confidence 9987532 3569999998765
No 29
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding, oxidoreductase, omega-hydroxylation, iron, heme, fatty acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium tuberculosis} PDB: 2wm4_A*
Probab=99.90 E-value=2.5e-22 Score=162.63 Aligned_cols=213 Identities=8% Similarity=0.070 Sum_probs=156.6
Q ss_pred chhHHHHHHHhhcCCeEEEEec-------CeeEEEecCHHHHHHHHhhCCccccCCcch--h-hhhhhhcCccccccCCC
Q 041575 13 PTHRILGNMANKYGPIFTMKMG-------VNRALVVSNSEITKECFTTNDKALASRPRR--M-AMEILGYNFLATPSSPY 82 (263)
Q Consensus 13 ~~~~~~~~~~~~yG~i~~~~~~-------~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~ 82 (263)
+++..+.+|+ +||||+++.++ +.+.++|+||+++++|+.++ ..|++++.. . ....++..+.++++.+
T Consensus 45 ~p~~~~~~l~-~~Gpv~~~~~~~~~~~~~g~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~d- 121 (435)
T 2wm5_A 45 VRDGAFATLR-REAPISFWPTIELPGFVAGNGHWALTKYDDVFYASRHP-DIFSSYPNITINDQTPELAEYFGSMIVLD- 121 (435)
T ss_dssp HHHHHHHHHH-HHCSEEEECCCCC---CCCCCEEEECSHHHHHHHHHCT-TTEECSSCCSSSCCCHHHHHHHHGGGGCC-
T ss_pred ChhHHHHHHH-hcCCeEecccccccccCCCCCeEEEcCHHHHHHHHcCc-ccccCccccccCccccchhhhccccccCC-
Confidence 5778899996 69999999986 56899999999999999754 467777531 1 1111211123566665
Q ss_pred ChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHH-HHHHHHHHHHHHHccccCCC
Q 041575 83 GSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWL-EGTTFDIIIRIIEGKRYTSQ 161 (263)
Q Consensus 83 g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~ 161 (263)
|+.|+++|+++.+ .|++.+++.+.+.+.+.++++++.|.+ ..++.++|+...+ ..+++++|+.+ ||.+++
T Consensus 122 g~~h~~~R~~l~~-~fs~~~l~~~~~~i~~~~~~ll~~l~~-----~~~~~~vd~~~~~~~~~~~~vi~~~-~G~~~~-- 192 (435)
T 2wm5_A 122 DPRHQRLRSIVSR-AFTPKVVARIEAAVRDRAHRLVSSMIA-----NNPDRQADLVSELAGPLPLQIICDM-MGIPKA-- 192 (435)
T ss_dssp TTHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHHHHH-----HCTTSEEEHHHHTTTHHHHHHHHHH-HTCCGG--
T ss_pred cHHHHHHHHHhHH-hhCHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCCcEehHHHHHHHHHHHHHHHH-cCCCHH--
Confidence 9999999999998 799999999999999999999999974 1223479999766 78999999999 999873
Q ss_pred cchHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHhc
Q 041575 162 EGTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSL 241 (263)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~~ 241 (263)
+.+.+......+.... .|.+ ++ ..++..+....+.+++.+.|+++++. +.+|+++.|+++
T Consensus 193 ~~~~~~~~~~~~~~~~--------~p~~--~~---~~~~~~~~~~~~~~~~~~~i~~r~~~-------~~~dll~~ll~~ 252 (435)
T 2wm5_A 193 DHQRIFHWTNVILGFG--------DPDL--AT---DFDEFMQVSADIGAYATALAEDRRVN-------HHDDLTSSLVEA 252 (435)
T ss_dssp GHHHHHHHHHHHHHTT--------CTTS--CC---CHHHHHHHHHHHHHHHHHHHHHHHHS-------CCSSHHHHHHHC
T ss_pred HHHHHHHHHHHHhccC--------Ccch--hh---hHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCCHHHHHHhh
Confidence 3344555444443321 1321 12 23566677788999999999988763 237999999987
Q ss_pred cccccccCCCCCchhhhhhhc
Q 041575 242 LYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 242 ~~~~~~~~~~~l~~~~i~~~~ 262 (263)
..+ +..+++++|.+++
T Consensus 253 ~~~-----~~~ls~~ei~~~~ 268 (435)
T 2wm5_A 253 EVD-----GERLSSREIASFF 268 (435)
T ss_dssp CBT-----TBCCCHHHHHHHH
T ss_pred hcc-----CCCCCHHHHHHHH
Confidence 432 3469999998765
No 30
>3v8d_A Cholesterol 7-alpha-monooxygenase; cytochrome, oxidoreductase; HET: HEM 0GV; 1.90A {Homo sapiens} PDB: 3sn5_A* 3dax_A*
Probab=99.90 E-value=1.4e-23 Score=172.90 Aligned_cols=235 Identities=13% Similarity=0.086 Sum_probs=162.2
Q ss_pred CcccccccCCCCchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCc-cccCCcchhhhhhhhcCcccccc
Q 041575 1 MIGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDK-ALASRPRRMAMEILGYNFLATPS 79 (263)
Q Consensus 1 llG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 79 (263)
++||++++. .+++.++.+++++|||||++++|+.++++|++|+++++|+.++.. .+..++.......++.+ .+..
T Consensus 24 liG~~~~~~--~~p~~~~~~l~~~yGpv~~~~lg~~~~vvv~~p~~v~~vl~~~~~~~~~~~~~~~~~~~~g~~--~~~~ 99 (491)
T 3v8d_A 24 YLGCALQFG--ANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFALSAKAFGHR--SIDP 99 (491)
T ss_dssp STTTTGGGT--CCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHSCCTTEESSHHHHHHHHHHHTCC--CCCG
T ss_pred eeccHHHHh--cCHHHHHHHHHHHcCCceEEEECCEEEEEEcCHHHHHHHHhcCCccchHHHHHHHHHHhcCCc--cccc
Confidence 689999987 799999999999999999999999999999999999999965431 23222222333444433 3333
Q ss_pred CCCChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHHHHHHHHHHHccccC
Q 041575 80 SPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRYT 159 (263)
Q Consensus 80 ~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~~ 159 (263)
. +|+.|+++|+.+.+ +|++.+++.+.+.+.+++..+++.+...... ...+..+++.+++..+++++++.++||.++.
T Consensus 100 ~-~g~~~~~~Rr~~~~-~f~~~~l~~~~~~i~~~~~~ll~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~fG~~~~ 176 (491)
T 3v8d_A 100 M-DGNTTENINDTFIK-TLQGHALNSLTESMMENLQRIMRPPVSSNSK-TAAWVTEGMYSFCYRVMFEAGYLTIFGRDLT 176 (491)
T ss_dssp G-GSSBCCCHHHHHHH-HHSHHHHHHHHHHHHHHHHHHHSCCSSCGGG-GCSCEEEEHHHHHHHHHHHHHHHHHHCBCCS
T ss_pred c-cchhHHHHHHHHHH-HcCccchHHHHHHHHHHHHHHHHhhhhcccC-CCCCcccCHHHHHHHHHHHHHHHHHcCcccc
Confidence 3 49999999999997 7899999999999999999998865321110 1134578999999999999999999999875
Q ss_pred CCcc--hHHHHHHHHHHHhhhccccccccccc-ccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHH
Q 041575 160 SQEG--TDLHEHAASFFTLFGKFVVSDALPFL-RWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIY 236 (263)
Q Consensus 160 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~ 236 (263)
..+. ..+.+.++.+.. +...+|.+ .++| ....++..++.+.+.+++.+.+.++++ ...|+++
T Consensus 177 ~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~p-~~~~~~~~~a~~~l~~~~~~~~~~~~~--------~~~d~l~ 241 (491)
T 3v8d_A 177 RRDTQKAHILNNLDNFKQ------FDKVFPALVAGLP-IHMFRTAHNAREKLAESLRHENLQKRE--------SISELIS 241 (491)
T ss_dssp CGGGHHHHHHHHHHHHHH------HHHHHHHHHTTCC-GGGCHHHHHHHHHHHHHTSHHHHTTCB--------SCCHHHH
T ss_pred ccchhhhhhHHHHHHHHH------HHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHHHHHHHhccc--------cccHHHH
Confidence 4211 223333333322 12233432 2244 233455666666666666555443321 2379999
Q ss_pred HHHhccccccccCCCCCchhhhhhhc
Q 041575 237 VMLSLLYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 237 ~ll~~~~~~~~~~~~~l~~~~i~~~~ 262 (263)
.++....+. ..++++++.+++
T Consensus 242 ~l~~~~~~~-----~~~~~~ei~~~~ 262 (491)
T 3v8d_A 242 LRMFLNDTL-----STFDDLEKAKTH 262 (491)
T ss_dssp HHHHHHHHH-----BCCCHHHHHHHH
T ss_pred HHHHHhhcc-----CCCchHHHHHHH
Confidence 999876544 358888888764
No 31
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans}
Probab=99.90 E-value=1.5e-22 Score=164.71 Aligned_cols=219 Identities=10% Similarity=0.058 Sum_probs=152.2
Q ss_pred hhHHHHHHHhhcCCeE--EEE-ecCeeEEEecCHHHHHHHHhhCCccccCCcchhhhh----------hhhc---Ccccc
Q 041575 14 THRILGNMANKYGPIF--TMK-MGVNRALVVSNSEITKECFTTNDKALASRPRRMAME----------ILGY---NFLAT 77 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~--~~~-~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~----------~~~~---~~~~~ 77 (263)
++..+.++ ++||||+ ++. +|+.++++|++++++++++.+ ...|++++...... ..++ ...++
T Consensus 47 p~~~~~~l-r~~gPV~~~~~~~~g~~~~~vvt~~~~v~~vl~~-~~~fs~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~l 124 (450)
T 3tkt_A 47 LLDRFDAL-RAEAPVAKVVAPDDEHEPFWLVSSFDGVMKASKD-NATFLNNPKSTVFTLRVGEMMAKAITGGSPHLVESL 124 (450)
T ss_dssp HHHHHHHH-HHHCSEEEECCTTCSSCCEEEECSHHHHHHHHHC-TTTEESSSSCSSCCCHHHHHHHHHHHTSCSCSSCCG
T ss_pred chHHHHHH-HhcCCeecccccCCCCCCEEEEecHHHHHHHHhC-cccccCCCccccccccccccccccccccccccccCc
Confidence 78889988 6789999 888 677899999999999999954 46777776432110 0100 11245
Q ss_pred ccCCCChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHH-HHHHHHHHHHHHHcc
Q 041575 78 PSSPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWL-EGTTFDIIIRIIEGK 156 (263)
Q Consensus 78 ~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~ 156 (263)
+.. +|+.|+++|+++++ .|++.+++.+.+.+.++++++++.|.+ . +.++|+...+ ..+++++|+.+ ||.
T Consensus 125 ~~~-dg~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~ll~~l~~-----~--~~~~dl~~~~~~~~~~~vi~~l-~G~ 194 (450)
T 3tkt_A 125 VQM-DAPKHPKLRRLTQD-WFMPKNLARLDGEIRKIANEAIDRMLG-----A--GEEGDFMALVAAPYPLHVVMQI-LGV 194 (450)
T ss_dssp GGC-CTTHHHHHHHHHHT-TTSHHHHGGGHHHHHHHHHHHHHHHHH-----T--CSEEEHHHHTTTHHHHHHHHHH-TTC
T ss_pred ccC-CCHHHHHHHHHhhh-hhCHHHHHHHHHHHHHHHHHHHHHHHh-----c--CCCEeeHHHHHHHHHHHHHHHH-cCC
Confidence 555 59999999999997 799999999999999999999999973 1 4589998887 69999999996 897
Q ss_pred ccCCCcchHHHHHHHHHHHhhhccccccccccccccc-CcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHH
Q 041575 157 RYTSQEGTDLHEHAASFFTLFGKFVVSDALPFLRWLD-IGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFI 235 (263)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l 235 (263)
+.+ +...+......+..... ..+.|+..+++ .....++..+....+.+++.+.|+++++. +.+|++
T Consensus 195 ~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~-------~~~dll 261 (450)
T 3tkt_A 195 PPE--DEPKMLFLTQQMFGGQD----EDMNKSGLKDLPPEQISQIVAGAVAEFERYFAGLAAERRRN-------PTDDVA 261 (450)
T ss_dssp CGG--GHHHHHHHHHTTSCCC--------------------HHHHHHHHHHHHHHHHHHHHHHHHHS-------CCSSHH
T ss_pred Chh--HHHHHHHHHHHHhcccc----chhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCHH
Confidence 652 22334333333221111 11222222221 12234566777788999999999988764 236999
Q ss_pred HHHHhccccccccCCCCCchhhhhhhc
Q 041575 236 YVMLSLLYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 236 ~~ll~~~~~~~~~~~~~l~~~~i~~~~ 262 (263)
+.|+++..+ +..++++||.+++
T Consensus 262 ~~ll~~~~~-----~~~ls~~ei~~~~ 283 (450)
T 3tkt_A 262 TVIANAVVD-----GEPMSDRDTAGYY 283 (450)
T ss_dssp HHHHTCEET-----TEECCHHHHHHHH
T ss_pred HHHHhcccc-----CCCCCHHHHHHHH
Confidence 999987543 3469999998765
No 32
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus subtilis} SCOP: a.104.1.0 PDB: 3ejd_B* 3eje_B*
Probab=99.90 E-value=1.8e-21 Score=156.31 Aligned_cols=208 Identities=13% Similarity=0.069 Sum_probs=150.7
Q ss_pred CchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchh-------hhhhhhcCccccccCCCCh
Q 041575 12 EPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRM-------AMEILGYNFLATPSSPYGS 84 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~ 84 (263)
.+++..+.+| ++||||+++++++.+.+++++|+++++++.++ ..|++++... .....+ .++++.+ |+
T Consensus 13 ~~p~~~~~~~-r~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~-g~ 86 (404)
T 3ejb_B 13 KNPYSFYDTL-RAVHPIYKGSFLKYPGWYVTGYEETAAILKDA-RFKVRTPLPESSTKYQDLSHVQN---QMMLFQN-QP 86 (404)
T ss_dssp HCHHHHHHHH-HHHCSEEEEEETTEEEEEECCHHHHHHHHHCT-TEECCCSSCTTCCTTHHHHHHHH---TSGGGCC-TT
T ss_pred cCchHHHHHH-HhhCCEeeccCCCCCEEEEecHHHHHHHHhCc-ccccCcccccccccccchhhhhh---cchhhcC-Cc
Confidence 5788999988 57999999999999999999999999999755 5676666421 111222 2566665 99
Q ss_pred hHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHH-HHHHHHHHHHHHHHccccCCCcc
Q 041575 85 YWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHW-LEGTTFDIIIRIIEGKRYTSQEG 163 (263)
Q Consensus 85 ~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~-~~~~~~~vi~~~~fG~~~~~~~~ 163 (263)
.|+++|+++++ .|++.+++.+.+.+.+++..+++.|. . +..+|+... ...+++++|+.+ ||.+.+ +.
T Consensus 87 ~h~~~Rr~~~~-~fs~~~l~~~~~~i~~~~~~ll~~l~------~--~~~~d~~~~~~~~~~~~vi~~~-~G~~~~--~~ 154 (404)
T 3ejb_B 87 DHRRLRTLASG-AFTPRTTESYQPYIIETVHHLLDQVQ------G--KKKMEVISDFAFPLASFVIANI-IGVPEE--DR 154 (404)
T ss_dssp HHHHHHHHHHG-GGSHHHHHTTHHHHHHHHHHHHHTTT------T--TSEEEHHHHTHHHHHHHHHHHH-HTCCGG--GH
T ss_pred hHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHHHHHhh------h--cCCcchHHHHHHHHHHHHHHHH-cCCCHH--HH
Confidence 99999999997 79999999999999999999999985 1 236898655 456999999995 898763 33
Q ss_pred hHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHhccc
Q 041575 164 TDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSLLY 243 (263)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~~~~ 243 (263)
+.+......+...+. .|+. ....+...+....+.+++.+.|+++++. ..+|+++.|+ +..
T Consensus 155 ~~~~~~~~~~~~~~~-------~p~~-----~~~~~~~~~~~~~~~~~~~~~i~~r~~~-------~~~d~l~~ll-~~~ 214 (404)
T 3ejb_B 155 EQLKEWAASLIQTID-------FTRS-----RKALTEGNIMAVQAMAYFKELIQKRKRH-------PQQDMISMLL-KGR 214 (404)
T ss_dssp HHHHHHHHHHHGGGS-------TTCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHS-------CCSSHHHHHH-HC-
T ss_pred HHHHHHHHHHHHhcc-------CCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CcchHHHHHH-hcc
Confidence 344444444332211 1211 1123456677788899999999988753 3479999999 432
Q ss_pred cccccCCCCCchhhhhhhc
Q 041575 244 DNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 244 ~~~~~~~~~l~~~~i~~~~ 262 (263)
+ +..++++++.+++
T Consensus 215 ~-----~~~ls~~el~~~~ 228 (404)
T 3ejb_B 215 E-----KDKLTEEEAASTC 228 (404)
T ss_dssp --------CCCHHHHHHHH
T ss_pred c-----CCCCCHHHHHHHH
Confidence 2 3579999998765
No 33
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox oxidoreductase; HET: HEM; 1.75A {Pseudonocardia autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Probab=99.90 E-value=6.9e-22 Score=158.93 Aligned_cols=205 Identities=11% Similarity=0.128 Sum_probs=150.8
Q ss_pred CchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchhhh-----hhhhcCccccccCCCChhH
Q 041575 12 EPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRMAM-----EILGYNFLATPSSPYGSYW 86 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~w 86 (263)
.+++..+.+| ++||||+++++++.+.++|++|+++++|+.++ . |++++..... ......+.++++. +|+.|
T Consensus 20 ~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~-~-f~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~~h 95 (411)
T 3a4g_A 20 QNPHPAYAAL-RAEDPVRKLALPDGPVWLLTRYADVREAFVDP-R-LSKDWRHTLPEDQRADMPATPTPMMILM-DPPDH 95 (411)
T ss_dssp TCCHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHTCT-T-EESCGGGGSCGGGCTTCCSCSSCCGGGC-CTTHH
T ss_pred cCchHHHHHH-HhcCCeeeccCCCCCEEEEecHHHHHHHHhCC-C-cccccccccccccccccCcccccccccC-CchHH
Confidence 6789999999 89999999999999999999999999999654 3 7776542211 1111122356665 59999
Q ss_pred HHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHH-HHHHHHHHHHHHHHccccCCCcchH
Q 041575 87 RETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHW-LEGTTFDIIIRIIEGKRYTSQEGTD 165 (263)
Q Consensus 87 ~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~-~~~~~~~vi~~~~fG~~~~~~~~~~ 165 (263)
+++|+++++ .|++.+++.+.+.+.++++++++.|. .. .++|+... ...+++++|+.+ ||.+++ +.+.
T Consensus 96 ~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~------~~--~~vd~~~~~~~~~~~~vi~~~-~G~~~~--~~~~ 163 (411)
T 3a4g_A 96 TRLRKLVGR-SFTVRRMNELEPRITEIADGLLAGLP------TD--GPVDLMREYAFQIPVQVICEL-LGVPAE--DRDD 163 (411)
T ss_dssp HHHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHHHSC------SS--SCEEHHHHTTTTHHHHHHHHH-HTCCGG--GHHH
T ss_pred HHHHHHhhh-hhCHHHHHHHHHHHHHHHHHHHHHHH------hc--CCccHHHHHHHHhHHHHHHHH-hCCCHH--HHHH
Confidence 999999998 79999999999999999999999985 21 37999754 568999999975 998763 2234
Q ss_pred HHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHhccccc
Q 041575 166 LHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSLLYDN 245 (263)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~~~~~~ 245 (263)
+......+... .| | ++..+....+.+++.+.|+++++. ..+|+++.|+++..++
T Consensus 164 ~~~~~~~~~~~---------~p-----~-----~~~~~~~~~~~~~~~~~i~~r~~~-------~~~d~l~~ll~~~~~~ 217 (411)
T 3a4g_A 164 FSAWSSVLVDD---------SP-----A-----DDKNAAMGKLHGYLSDLLERKRTE-------PDDALLSSLLAVSDED 217 (411)
T ss_dssp HHHHHHHHTTS---------SC-----T-----TTHHHHHHHHHHHHHHHHHHHHHS-------CCSSHHHHHHHCCCTT
T ss_pred HHHHHHHHhcc---------CC-----H-----HHHHHHHHHHHHHHHHHHHHHHhC-------CCCCHHHHHHHhhccC
Confidence 44333322110 12 1 134456677888999999988763 2369999999875422
Q ss_pred cccCCCCCchhhhhhhc
Q 041575 246 AKQLPDSDADTVIKALC 262 (263)
Q Consensus 246 ~~~~~~~l~~~~i~~~~ 262 (263)
+..+++++|.+++
T Consensus 218 ----~~~ls~~ei~~~~ 230 (411)
T 3a4g_A 218 ----GDRLSQEELVAMA 230 (411)
T ss_dssp ----CCCCCHHHHHHHH
T ss_pred ----CCCCCHHHHHHHH
Confidence 4579999998765
No 34
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM EDO; 1.37A {Citrobacter braakii} PDB: 4fmx_A* 4fyz_A* 1t2b_A* 3bdz_A* 3be0_A*
Probab=99.89 E-value=4.5e-22 Score=159.52 Aligned_cols=205 Identities=11% Similarity=0.074 Sum_probs=151.3
Q ss_pred CchhHHHHHHHhhc--CCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchhhhhhhhcCccccccCCCChhHHHH
Q 041575 12 EPTHRILGNMANKY--GPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRMAMEILGYNFLATPSSPYGSYWRET 89 (263)
Q Consensus 12 ~~~~~~~~~~~~~y--G~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~ 89 (263)
.+++.++.+|+++| |||+++.+++ +.++|++|+++++|+ ++...|++++.............+++ ..+|+.|+++
T Consensus 19 ~~p~~~~~~l~~~Y~~Gpv~~~~~~~-~~~vv~~~~~v~~vl-~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~ 95 (398)
T 4fb2_A 19 GTPHAFFEALRDEAETTPIGWSEAYG-GHWVVAGYKEIQAVI-QNTKAFSNKGVTFPRYETGEFELMMA-GQDDPVHKKY 95 (398)
T ss_dssp SSSHHHHHHHHHHHTTCSEEEECGGG-CEEEECSHHHHHHHH-TCCSSEEGGGCSSSCC----CCCTTT-TCCTTHHHHH
T ss_pred cChhHHHHHHHhcCCCCCeEEecCCC-CEEEEccHHHHHHHH-hChhhccCCcccccCCCCcccccCcc-cCCchHHHHH
Confidence 68999999999999 9999999876 599999999999999 55567777665432111111222334 4459999999
Q ss_pred HhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHH-HHHHHHHHHHHHHccccCCCcchHHHH
Q 041575 90 RKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWL-EGTTFDIIIRIIEGKRYTSQEGTDLHE 168 (263)
Q Consensus 90 Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~ 168 (263)
|+++.+ .|++.+++.+.+.+.+.+.++++.|.+ . ..+|+...+ ..+++++|+. +||.+.+ +.+.+..
T Consensus 96 R~~~~~-~f~~~~l~~~~~~i~~~~~~l~~~l~~------~--~~~d~~~~~~~~~~~~vi~~-~~G~~~~--~~~~~~~ 163 (398)
T 4fb2_A 96 RQLVAK-PFSPEATDLFTEQLRQSTNDLIDARIE------L--GEGDAATWLANEIPARLTAI-LLGLPPE--DGDTYRR 163 (398)
T ss_dssp HHHHHT-TTCHHHHHTTHHHHHHHHHHHHHTTTT------T--TEEEHCCCCCTTHHHHHHHH-HTTSCGG--GHHHHHH
T ss_pred HHHHHH-hhCHHHHHHHHHHHHHHHHHHHHHHhh------c--CCccHHHHHHHHHHHHHHHH-HcCCCHH--HHHHHHH
Confidence 999997 799999999999999999999999852 2 258875554 6899999999 6897652 2334444
Q ss_pred HHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHhcccccccc
Q 041575 169 HAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSLLYDNAKQ 248 (263)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~ 248 (263)
....+.. |. ...+..+..+.+.+++.+.|+++++. ..+|+++.|+++..+
T Consensus 164 ~~~~~~~-----------~~--------~~~~~~~~~~~~~~~~~~~i~~r~~~-------~~~d~l~~ll~~~~~---- 213 (398)
T 4fb2_A 164 WVWAITH-----------VE--------NPEEGAEIFAELVAHARTLIAERRTN-------PGNDIMSRVIMSKID---- 213 (398)
T ss_dssp HHHHHHH-----------CC--------CHHHHHHHHHHHHHHHHHHHHHHHHS-------CCSSHHHHHHHCCBT----
T ss_pred HHHHHhc-----------CC--------CHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCHHHHHHHcccC----
Confidence 4333322 10 12356677788899999999988863 337999999987543
Q ss_pred CCCCCchhhhhhhc
Q 041575 249 LPDSDADTVIKALC 262 (263)
Q Consensus 249 ~~~~l~~~~i~~~~ 262 (263)
+..+++++|.+++
T Consensus 214 -~~~l~~~~i~~~~ 226 (398)
T 4fb2_A 214 -GESLSEDDLIGFF 226 (398)
T ss_dssp -TBCCCHHHHHHHH
T ss_pred -CCCCCHHHHHHHH
Confidence 3469999998765
No 35
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET: HEM; 2.90A {Streptomyces coelicolor} PDB: 4fxb_A*
Probab=99.89 E-value=1.3e-21 Score=157.67 Aligned_cols=206 Identities=10% Similarity=0.085 Sum_probs=153.5
Q ss_pred CchhHHHHHHHhhcCCeEEEEec-CeeEEEecCHHHHHHHHhhCCccccCCcchh----hhhhh---hcCccccccCCCC
Q 041575 12 EPTHRILGNMANKYGPIFTMKMG-VNRALVVSNSEITKECFTTNDKALASRPRRM----AMEIL---GYNFLATPSSPYG 83 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~~-~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~g 83 (263)
.+++..+.+|+++ |||++++++ +.+.++|++|+++++|+.++ .|++++... ..... +....++++.+ |
T Consensus 29 ~dp~~~~~~l~~~-Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d-g 104 (417)
T 3tyw_A 29 FAAPAEYAALRTD-DPVARVTLPTRREAWVVTRYDDVRELLSDP--RVSADIRRPGFPALGEGEQEAGARFRPFIRTD-A 104 (417)
T ss_dssp TSCCTHHHHHHHT-CTEEEEECTTSCEEEEECCHHHHHHHHHCT--TEECCSSSTTCCCSSTTTSTTSSSCCCGGGCC-H
T ss_pred cCchHHHHHHHhh-CCeeeeecCCCCCeEEEcCHHHHHHHHcCC--CcccCCccccccccccccccccccccchhhcC-C
Confidence 6899999999998 999999987 58999999999999999654 566653211 11111 01223566664 9
Q ss_pred hhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHH-HHHHHHHHHHHHHccccCCCc
Q 041575 84 SYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWL-EGTTFDIIIRIIEGKRYTSQE 162 (263)
Q Consensus 84 ~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~ 162 (263)
+.|+++|+++.+ .|++.+++.+.+.+.+++.++++.|.+ .+.++|+...+ ..+++++|+.+ ||.+++.
T Consensus 105 ~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~~-------~g~~~d~~~~~~~~~~~~vi~~~-~G~~~~~-- 173 (417)
T 3tyw_A 105 PEHTRYRRMLLP-AFTVRRVRAMRPAVQARVDEILDGMLA-------AGGPVDLVSAYANAVSTSVICEL-LGIPRHD-- 173 (417)
T ss_dssp HHHHHHHHHHGG-GGCHHHHHHTHHHHHHHHHHHHHHHHH-------HCSSEEHHHHTHHHHHHHHHHHH-HTCCTTT--
T ss_pred cHHHHHHHHHHh-hhCHHHHHHHHHHHHHHHHHHHHHHHh-------hCCCcchHHHHHHHHHHHHHHHH-hCCCHHH--
Confidence 999999999997 799999999999999999999999973 23479999987 58999999997 9988743
Q ss_pred chHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHhcc
Q 041575 163 GTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSLL 242 (263)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~~~ 242 (263)
.+.+......+... . + ..+...+....+.+++.+.|+++++. +.+|+++.|+.+.
T Consensus 174 ~~~~~~~~~~~~~~---------~------~---~~~~~~~~~~~l~~~~~~~i~~r~~~-------~~~d~l~~ll~~~ 228 (417)
T 3tyw_A 174 LEFFRDVTRISGSR---------N------S---TAEQVSEALGGLFGLLGGLVAERREE-------PRDDLISKLVTDH 228 (417)
T ss_dssp TTHHHHHHHHHHSS---------S------S---CTTHHHHHHHHHHHHHHHHHHHHHSS-------CCSSHHHHHHHHT
T ss_pred HHHHHHHHHHHhcc---------c------C---CHHHHHHHHHHHHHHHHHHHHHHhhC-------CCCCHHHHHHHhc
Confidence 33444443332211 0 1 12345667788899999999988753 3379999999875
Q ss_pred ccccccCCCCCchhhhhhhc
Q 041575 243 YDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 243 ~~~~~~~~~~l~~~~i~~~~ 262 (263)
.++ ..++++++.+++
T Consensus 229 ~~~-----~~ls~~el~~~~ 243 (417)
T 3tyw_A 229 LVP-----GNVTTEQLLSTL 243 (417)
T ss_dssp TTT-----TSSCHHHHHHHH
T ss_pred ccC-----CCCCHHHHHHHH
Confidence 543 469999998765
No 36
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis; HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB: 2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Probab=99.89 E-value=7.2e-22 Score=159.06 Aligned_cols=207 Identities=10% Similarity=0.104 Sum_probs=150.0
Q ss_pred CchhHHHHHHHhhcCCeEEEEe-cCeeEEEecCHHHHHHHHhhCCccccCCcch-hhhhhhhc--CccccccCCCChhHH
Q 041575 12 EPTHRILGNMANKYGPIFTMKM-GVNRALVVSNSEITKECFTTNDKALASRPRR-MAMEILGY--NFLATPSSPYGSYWR 87 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~g~~w~ 87 (263)
.+++..+.+| ++||||+++++ ++.+.++|+||+++++|+.++ .|.+++.. .....+.. ...++++. +|+.|+
T Consensus 37 ~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~i~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~l~~~-dg~~h~ 112 (417)
T 2y5n_A 37 LTLAGRYGEL-QETEPVSRVRPPYGEEAWLVTRYEDVRAVLGDG--RFVRGPSMTRDEPRTRPEMVKGGLLSM-DPPEHS 112 (417)
T ss_dssp CCCCHHHHHH-HHHCSEEEEECSBSCCEEEECSHHHHHHHHTCT--TEESGGGGTSCCCBSSSSCCCCSGGGC-CTTHHH
T ss_pred cCchHHHHHH-HhcCCeEeeccCCCceEEEECCHHHHHHHHcCC--CcccCccccccccccCcccccccCccC-CchHHH
Confidence 6789999999 89999999997 788999999999999999653 46555432 11111111 12356666 599999
Q ss_pred HHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHH-HHHHHHHHHHHHHccccCCCcchHH
Q 041575 88 ETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWL-EGTTFDIIIRIIEGKRYTSQEGTDL 166 (263)
Q Consensus 88 ~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~~~~~ 166 (263)
++|+++.+ .|++.+++.+.+.+.++++++++.|.. ++.++|+...+ ..+++++|+. +||.+++ +.+.+
T Consensus 113 ~~R~~l~~-~fs~~~l~~~~~~i~~~~~~ll~~l~~-------~~~~vdl~~~~~~~~~~~vi~~-~~G~~~~--~~~~~ 181 (417)
T 2y5n_A 113 RLRRLVVK-AFTARRAESLRPRAREIAHELVDQMAA-------TGQPADLVAMFARQLPVRVICE-LLGVPSA--DHDRF 181 (417)
T ss_dssp HHHHHHHH-HSCHHHHHHTHHHHHHHHHHHHHHHHH-------HCSSEEHHHHTTTTHHHHHHHH-HHTCCGG--GHHHH
T ss_pred HHHHHHhh-hcCHHHHHHHHHHHHHHHHHHHHHHHh-------CCCCeeHHHHHHHHhHHHHHHH-HcCCCHH--HHHHH
Confidence 99999998 699999999999999999999999962 11269998776 4699999998 6998763 22233
Q ss_pred HHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHhcccccc
Q 041575 167 HEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSLLYDNA 246 (263)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~ 246 (263)
......+.. .+ ..| .++..+....+.+++.+.|+++++. ..+|+++.|+++..+
T Consensus 182 ~~~~~~~~~---------~~----~~~----~~~~~~~~~~l~~~~~~~i~~r~~~-------~~~dll~~ll~~~~~-- 235 (417)
T 2y5n_A 182 TRWSGAFLS---------TA----EVT----AEEMQEAAEQAYAYMGDLIDRRRKE-------PTDDLVSALVQARDQ-- 235 (417)
T ss_dssp HHHHHTTST---------TC----CCC----HHHHHHHHHHHHHHHHHHHHHHHHS-------CCSSHHHHHHHCCBT--
T ss_pred HHHHHHHhc---------cc----CCC----HHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCHHHHHHhhhcc--
Confidence 322211110 00 011 2456677788899999999988763 236999999987532
Q ss_pred ccCCCCCchhhhhhhc
Q 041575 247 KQLPDSDADTVIKALC 262 (263)
Q Consensus 247 ~~~~~~l~~~~i~~~~ 262 (263)
+..+++++|.+++
T Consensus 236 ---~~~ls~~ei~~~~ 248 (417)
T 2y5n_A 236 ---QDSLSEQELLDLA 248 (417)
T ss_dssp ---TBCCCHHHHHHHH
T ss_pred ---CCCCCHHHHHHHH
Confidence 3469999998765
No 37
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM; 1.60A {Mycobacterium tuberculosis}
Probab=99.89 E-value=1.3e-21 Score=156.91 Aligned_cols=206 Identities=9% Similarity=0.059 Sum_probs=151.9
Q ss_pred CchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchhhhhhhhcCccccccCCCChhHHHHHh
Q 041575 12 EPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRMAMEILGYNFLATPSSPYGSYWRETRK 91 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~Rk 91 (263)
.+++.++.+|++ ||||+++. .+.++|++|+++++|+.++ ..|++++... .... .+.++++.+ |+.|+++|+
T Consensus 18 ~~p~~~~~~l~~-~Gpv~~~~---~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~-~~~~--~~~~l~~~~-g~~h~~~R~ 88 (398)
T 2xkr_A 18 REARAAYRWMRA-NQPVFRDR---NGLAAASTYQAVIDAERQP-ELFSNAGGIR-PDQP--ALPMMIDMD-DPAHLLRRK 88 (398)
T ss_dssp TTHHHHHHHHHH-HCSEEECT---TCCEEECSHHHHHHHHTCT-TTEESTTCSS-TTSC--CCSSGGGCC-TTHHHHHHH
T ss_pred cChhHHHHHHHh-cCCeeecC---CCeEEEecHHHHHHHHhCc-ccccCccccC-Cccc--ccccccccC-chHHHHHHH
Confidence 678999999988 99999763 3799999999999999654 4677765322 1111 123566664 999999999
Q ss_pred HHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehh-HHHHHHHHHHHHHHHHccccCCCcchHHHHHH
Q 041575 92 IATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMK-HWLEGTTFDIIIRIIEGKRYTSQEGTDLHEHA 170 (263)
Q Consensus 92 ~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~-~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~ 170 (263)
++++ .|++.+++.+.+.+.+.+.++++.|.+ . .++|+. .....+++++|+.+ ||.+++ +.+.+....
T Consensus 89 ~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~~-------~-~~~d~~~~~~~~~~~~vi~~~-fG~~~~--~~~~~~~~~ 156 (398)
T 2xkr_A 89 LVNA-GFTRKRVKDKEASIAALCDTLIDAVCE-------R-GECDFVRDLAAPLPMAVIGDM-LGVRPE--QRDMFLRWS 156 (398)
T ss_dssp HHGG-GSCHHHHHTTHHHHHHHHHHHHHTTTT-------T-SEEEHHHHTTTHHHHHHHHHH-HTCCGG--GHHHHHHHH
T ss_pred Hhhh-hhCHHHHHHHHHHHHHHHHHHHHhhhh-------c-CCccHHHHHHHHHHHHHHHHH-hCCCHH--HHHHHHHHH
Confidence 9997 799999999999999999999999852 2 279999 55568999999998 998863 334455544
Q ss_pred HHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHhccccccccCC
Q 041575 171 ASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSLLYDNAKQLP 250 (263)
Q Consensus 171 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~ 250 (263)
..+.... .|. ++| ...++..+....+.+++.+.|+++++. +.+|+++.|+++..+ +
T Consensus 157 ~~~~~~~--------~~~--~~p--~~~~~~~~~~~~~~~~~~~~i~~r~~~-------~~~dll~~ll~~~~~-----~ 212 (398)
T 2xkr_A 157 DDLVTFL--------SSH--VSQ--EDFQITMDAFAAYNDFTRATIAARRAD-------PTDDLVSVLVSSEVD-----G 212 (398)
T ss_dssp HHHHHHH--------TSC--CCH--HHHHHHHHHHHHHHHHHHHHHHHHHHS-------CCSSHHHHHHHCCBT-----T
T ss_pred HHHHhcc--------Ccc--cch--hhHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCHHHHHHHhhcc-----C
Confidence 4443321 121 122 223456677788899999999988762 237999999987542 3
Q ss_pred CCCchhhhhhhc
Q 041575 251 DSDADTVIKALC 262 (263)
Q Consensus 251 ~~l~~~~i~~~~ 262 (263)
..+++++|.+++
T Consensus 213 ~~ls~~ei~~~~ 224 (398)
T 2xkr_A 213 ERLSDDELVMET 224 (398)
T ss_dssp BCCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 469999998765
No 38
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin, oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A* 1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Probab=99.89 E-value=1.9e-21 Score=156.12 Aligned_cols=206 Identities=10% Similarity=0.137 Sum_probs=153.2
Q ss_pred CchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcch--h----hhh---hh-hc----Ccccc
Q 041575 12 EPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRR--M----AME---IL-GY----NFLAT 77 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~--~----~~~---~~-~~----~~~~~ 77 (263)
.+++..+.+| ++||||+++++++.+.+++++|+++++|+.++ .|++++.. . ... .+ .. .+.++
T Consensus 14 ~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 90 (404)
T 1z8o_A 14 VDWYRTYAEL-RETAPVTPVRFLGQDAWLVTGYDEAKAALSDL--RLSSDPKKKYPGVEVEFPAYLGFPEDVRNYFATNM 90 (404)
T ss_dssp SSHHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHHCT--TEECCTTCCCTTCCCCCGGGTTCCHHHHHHHSSSG
T ss_pred cCcHHHHHHH-HhcCCeeeecCCCceEEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccchhhhccccc
Confidence 6899999999 99999999999889999999999999999754 56666532 1 000 11 00 12356
Q ss_pred ccCCCChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHH-HHHHHHHHHHHHHcc
Q 041575 78 PSSPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWL-EGTTFDIIIRIIEGK 156 (263)
Q Consensus 78 ~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~ 156 (263)
++. +|+.|+++|+++++ .|++.+++.+.+.+.+.++++++.|. . +.++|+...+ ..+++++|+.+ ||.
T Consensus 91 ~~~-~g~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~------~--~~~~d~~~~~~~~~~~~vi~~~-~G~ 159 (404)
T 1z8o_A 91 GTS-DPPTHTRLRKLVSQ-EFTVRRVEAMRPRVEQITAELLDEVG------D--SGVVDIVDRFAHPLPIKVICEL-LGV 159 (404)
T ss_dssp GGC-CTTHHHHHHHHHHT-TSCHHHHHHTHHHHHHHHHHHHHTSC------S--SSEEEHHHHTTTHHHHHHHHHH-TTC
T ss_pred ccC-CCcHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHHHHHhhh------h--cCCcchHHHHhHHHHHHHHHHH-hCC
Confidence 666 59999999999998 79999999999999999999999985 2 3479998755 68999999985 998
Q ss_pred ccCCCcchHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHH
Q 041575 157 RYTSQEGTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIY 236 (263)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~ 236 (263)
+.+ +.+.+......+.. . .| | . .++..+....+.+++.+.|+++++. ..+|+++
T Consensus 160 ~~~--~~~~~~~~~~~~~~-~--------~~-----p--~-~~~~~~~~~~~~~~~~~~i~~r~~~-------~~~dll~ 213 (404)
T 1z8o_A 160 DEK--YRGEFGRWSSEILV-M--------DP-----E--R-AEQRGQAAREVVNFILDLVERRRTE-------PGDDLLS 213 (404)
T ss_dssp CGG--GTTTHHHHHHHHHC-C--------CG-----G--G-HHHHHHHHHHHHHHHHHHHHHHHHS-------CCSSHHH
T ss_pred CHH--HHHHHHHHHHHHhc-c--------CC-----h--h-HHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCHHH
Confidence 763 23445554444332 0 01 2 1 3456677788899999999988763 2369999
Q ss_pred HHHhc-cccccccCCCCCchhhhhhhc
Q 041575 237 VMLSL-LYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 237 ~ll~~-~~~~~~~~~~~l~~~~i~~~~ 262 (263)
.|+++ .. + +..+++++|.+++
T Consensus 214 ~ll~~~~~-~----~~~l~~~ei~~~~ 235 (404)
T 1z8o_A 214 ALIRVQDD-D----DGRLSADELTSIA 235 (404)
T ss_dssp HHHHCEET-T----TEECCHHHHHHHH
T ss_pred HHHhhhcc-c----CCCCCHHHHHHHH
Confidence 99986 33 2 3469999998765
No 39
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase; HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.89 E-value=2e-21 Score=156.25 Aligned_cols=211 Identities=16% Similarity=0.210 Sum_probs=150.2
Q ss_pred CchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcc--hhhh-hh------hhc-CccccccCC
Q 041575 12 EPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPR--RMAM-EI------LGY-NFLATPSSP 81 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~--~~~~-~~------~~~-~~~~~~~~~ 81 (263)
.+++..+.+| ++||||+++++++.+.++|+||+++++|+.++. +++++. +... .. .+. ...++++.
T Consensus 15 ~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 90 (408)
T 1odo_A 15 ADHHTEHRTL-REGGPATWVDVLGVQAWSVSDPVLLKQLLTSSD--VSKDARAHWPAFGEVVGTWPLALWVAVENMFTA- 90 (408)
T ss_dssp TTHHHHHHHH-HTTCSEEEEEETTEEEEEECCHHHHHHHTTCTT--EESCHHHHCTTHHHHTTTCTTTHHHHCCSGGGC-
T ss_pred CChHHHHHHH-HHhCCeEEeccCCCCEEEECCHHHHHHHHcCCC--ccccccccccccccccccccccccccccccccc-
Confidence 6899999999 999999999998889999999999999996542 344432 1100 10 100 11255555
Q ss_pred CChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHH-HHHHHHHHHHHHccccCC
Q 041575 82 YGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLE-GTTFDIIIRIIEGKRYTS 160 (263)
Q Consensus 82 ~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~-~~~~~vi~~~~fG~~~~~ 160 (263)
+|+.|+++|+++++ .|++.+++.+.+.+.+.++++++.|.+ ...+.++|+.+.+. .+++++|+. +||.+.+
T Consensus 91 ~g~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~~-----~~~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~- 162 (408)
T 1odo_A 91 YGPNHRKLRRLVAP-AFSARRVDAMRPAVEAMVTGLVDRLAE-----LPAGEPVDLRQELAYPLPIAVIGH-LMGVPQD- 162 (408)
T ss_dssp CHHHHHHHHHTTGG-GGSHHHHHHHHHHHHHHHHHHHHHHHH-----SCTTSCEEHHHHTTTHHHHHHHHH-HHTCCHH-
T ss_pred CChHHHHHHHHhhh-hcCHHHHHHHHHHHHHHHHHHHHHHHh-----hcCCCCcchHHHHhhhhHHHHHHH-HhCCCHH-
Confidence 59999999999997 799999999999999999999999974 12245799998887 599999996 7998652
Q ss_pred CcchHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHh
Q 041575 161 QEGTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLS 240 (263)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~ 240 (263)
+.+.+...+..+... ..+ .++..+....+.+++.++|+++++. ..+|+++.|++
T Consensus 163 -~~~~~~~~~~~~~~~--------------~~~----~~~~~~~~~~~~~~~~~~i~~r~~~-------~~~d~l~~ll~ 216 (408)
T 1odo_A 163 -RRDGFRALVDGVFDT--------------TLD----QAEAQANTARLYEVLDQLIAAKRAT-------PGDDMTSLLIA 216 (408)
T ss_dssp -HHHHHHHHHHHHHCT--------------TCC----HHHHHHHHHHHHHHHHHHHHHHHHS-------CCSSHHHHHHH
T ss_pred -HHHHHHHHHHHHhcc--------------cCC----HHHHHHHHHHHHHHHHHHHHHHhhC-------CCCCHHHHHHH
Confidence 223343333332210 011 2445667778899999999988763 23699999998
Q ss_pred ccccccccCCCCCchhhhhhhc
Q 041575 241 LLYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 241 ~~~~~~~~~~~~l~~~~i~~~~ 262 (263)
+..++ ..+..+++++|.+++
T Consensus 217 ~~~~~--~~~~~l~~~ei~~~~ 236 (408)
T 1odo_A 217 ARDDE--GDGDRLSPEELRDTL 236 (408)
T ss_dssp HHCC-------CCCHHHHHHHH
T ss_pred hcccc--cccCCCCHHHHHHHH
Confidence 75431 113469999998765
No 40
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A {Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A* 1pkf_A*
Probab=99.89 E-value=1.2e-21 Score=157.91 Aligned_cols=212 Identities=15% Similarity=0.123 Sum_probs=154.4
Q ss_pred CchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcc-----hh-h--hhhhhcC-ccccccCCC
Q 041575 12 EPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPR-----RM-A--MEILGYN-FLATPSSPY 82 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~-----~~-~--~~~~~~~-~~~~~~~~~ 82 (263)
.+++..+.+| ++||||++ + ++.+.++|++|+++++|+.++ . |++++. .. . ...++.. +.++++. +
T Consensus 26 ~~p~~~~~~l-~~~Gpv~~-~-~~~~~vvv~~~~~v~~vl~~~-~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 99 (419)
T 1q5d_A 26 EDPFPAIERL-REATPIFY-W-DEGRSWVLTRYHDVSAVFRDE-R-FAVSREEWESSAEYSSAIPELSDMKKYGLFGL-P 99 (419)
T ss_dssp TCCHHHHHHH-HHHCSEEE-E-TTTTEEEECSHHHHHHHHTCT-T-EECCGGGSTTHHHHHHSSGGGHHHHHHSTTTS-C
T ss_pred hChHHHHHHH-HhhCCccc-c-CCCCEEEEecHHHHHHHHcCC-C-ccccccccccccccccccchhhhhcccccccC-C
Confidence 5789999999 68999999 6 667899999999999999765 3 877762 11 1 1112110 2256666 4
Q ss_pred ChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHH-HHHHHHHHHHHHHHccccCCC
Q 041575 83 GSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHW-LEGTTFDIIIRIIEGKRYTSQ 161 (263)
Q Consensus 83 g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~-~~~~~~~vi~~~~fG~~~~~~ 161 (263)
|+.|+++|+++.+ .|++.+++.+.+.+.+.+.++++.|.+ . .++|+... ...+++++|+.+ ||.+++
T Consensus 100 g~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~ll~~l~~-------~-~~~d~~~~~~~~~~~~vi~~~-fG~~~~-- 167 (419)
T 1q5d_A 100 PEDHARVRKLVNP-SFTSRAIDLLRAEIQRTVDQLLDARSG-------Q-EEFDVVRDYAEGIPMRAISAL-LKVPAE-- 167 (419)
T ss_dssp HHHHHHHHHHHGG-GGSHHHHGGGHHHHHHHHHHHHHHHTT-------S-SCEETTTTTGGGSHHHHHHHH-TTCCGG--
T ss_pred chHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHHHh-------c-CCCCHHHHHHHHHHHHHHHHH-hCCCHH--
Confidence 9999999999998 799999999999999999999999962 2 27999865 489999999998 998763
Q ss_pred cchHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC-cHHHHHHh
Q 041575 162 EGTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDE-DFIYVMLS 240 (263)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-d~l~~ll~ 240 (263)
+.+.+......+...... ..+|+. + ...++..+....+.+++.+.|+++++. ..+ |+++.|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~----~~~P~~---~--~~~~~~~~~~~~~~~~~~~~i~~r~~~-------~~~~dll~~ll~ 231 (419)
T 1q5d_A 168 CDEKFRRFGSATARALGV----GLVPRV---D--EETKTLVASVTEGLALLHGVLDERRRN-------PLENDVLTMLLQ 231 (419)
T ss_dssp GHHHHHHHHHHHHHHTTT----TTSSCC---C--SCHHHHHHHHHHHHHHHHHHHHHHHHS-------CCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccc----ccccCC---h--HHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCCHHHHHHh
Confidence 334555555544443211 123321 1 224566777788999999999988763 235 99999998
Q ss_pred ccccccccCCCCCchhhhhhhc
Q 041575 241 LLYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 241 ~~~~~~~~~~~~l~~~~i~~~~ 262 (263)
+..+ +..+++++|.+++
T Consensus 232 ~~~~-----~~~l~~~ei~~~~ 248 (419)
T 1q5d_A 232 AEAD-----GSRLSTKELVALV 248 (419)
T ss_dssp HHHS-----STTCCHHHHHHHH
T ss_pred hhcc-----CCCCCHHHHHHHH
Confidence 7432 3579999998765
No 41
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding, oxidoreductase-antibiotic complex; HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB: 3e5j_A* 3e5k_A* 3e5l_A*
Probab=99.89 E-value=1.6e-21 Score=156.52 Aligned_cols=206 Identities=10% Similarity=0.085 Sum_probs=150.2
Q ss_pred CchhHHHHHHHhhcCCeEEEEe-cCeeEEEecCHHHHHHHHhhCCccccCCcc--h-hhhhhhhc--CccccccCCCChh
Q 041575 12 EPTHRILGNMANKYGPIFTMKM-GVNRALVVSNSEITKECFTTNDKALASRPR--R-MAMEILGY--NFLATPSSPYGSY 85 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~--~-~~~~~~~~--~~~~~~~~~~g~~ 85 (263)
.+++..+.+| ++||||+++++ |+.+.+++++|+++++|+.++ .|++++. + .....+.. .+.++++. +|+.
T Consensus 19 ~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~~ 94 (403)
T 3aba_A 19 FLPPDGIADI-RAAAPVTRATFTSGHEAWLVTGYEEVRALLRDS--SFSVQVPHALHTQDGVVTQKPGRGSLLWQ-DEPE 94 (403)
T ss_dssp TSCCTTHHHH-HHHCSEEEEECTTSCEEEEECCHHHHHHHHHCT--TEESCCSCCTTSSSCCCCCCCCTTCCTTC-CTTH
T ss_pred cChhHHHHHH-HhcCCeeeeccCCCceEEEEcCHHHHHHHHcCC--CcccccccccccccccccccccccccccC-Cchh
Confidence 5788999999 89999999997 889999999999999999653 4666542 1 11000111 12356655 5999
Q ss_pred HHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHH-HHHHHHHHHHHHHccccCCCcch
Q 041575 86 WRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWL-EGTTFDIIIRIIEGKRYTSQEGT 164 (263)
Q Consensus 86 w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~~~ 164 (263)
|+++|+++++ .|++.+++.+.+.+.+.++++++.|.+ .+.++|+...+ ..+++++|+. +||.+.+ +.+
T Consensus 95 h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~ll~~l~~-------~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~--~~~ 163 (403)
T 3aba_A 95 HTSDRKLLAK-EFTVRRMQALRPNIQRIVDEHLDAIEA-------RGGPVDLVKTFANAVPSMVISD-LFGVPVE--RRA 163 (403)
T ss_dssp HHHHHHHHHH-HSCHHHHHTTHHHHHHHHHHHHHHHHH-------HCSCEEHHHHTTTHHHHHHHHH-HHTCCGG--GHH
T ss_pred HHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCccHHHHHHHHHHHHHHHH-HcCCCHH--HHH
Confidence 9999999998 799999999999999999999999973 12379998766 5799999998 6998763 223
Q ss_pred HHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHhcccc
Q 041575 165 DLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSLLYD 244 (263)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~~~~~ 244 (263)
.+......+.. . . .+ .++..++...+.+++.+.|+++++. ..+|+++.|+++..
T Consensus 164 ~~~~~~~~~~~----~-----~-----~~----p~~~~~~~~~~~~~~~~~i~~r~~~-------~~~dll~~ll~~~~- 217 (403)
T 3aba_A 164 EFQDIAEAMMR----V-----D-----QD----AAATEAAGMRLGGLLYQLVQERRAN-------PGDDLISALITTED- 217 (403)
T ss_dssp HHHHHHHHHSB----S-----S-----SC----HHHHHHHHHHHHHHHHHHHHHHHHS-------CCSSHHHHHHTSCC-
T ss_pred HHHHHHHHHHh----c-----c-----Cc----HHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCHHHHHHhhcc-
Confidence 33333222111 0 0 01 1455667778899999999988763 23699999998753
Q ss_pred ccccCCCCCchhhhhhhc
Q 041575 245 NAKQLPDSDADTVIKALC 262 (263)
Q Consensus 245 ~~~~~~~~l~~~~i~~~~ 262 (263)
+ +..+++++|.+++
T Consensus 218 ~----~~~l~~~ei~~~~ 231 (403)
T 3aba_A 218 P----DGVVDDMFLMNAA 231 (403)
T ss_dssp T----TCCCSHHHHHHHH
T ss_pred C----CCCCCHHHHHHHH
Confidence 2 3579999998765
No 42
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR, atomic resolutio structural genomics/proteomics initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum} SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A* 1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A* 1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Probab=99.89 E-value=8.1e-21 Score=152.58 Aligned_cols=212 Identities=8% Similarity=0.048 Sum_probs=150.0
Q ss_pred CchhHHHHHHHhhcCCeEEEEec-CeeEEEecCHHHHHHHHhhCC-ccccCCcchhhhh----hhhcCccccccCCCChh
Q 041575 12 EPTHRILGNMANKYGPIFTMKMG-VNRALVVSNSEITKECFTTND-KALASRPRRMAME----ILGYNFLATPSSPYGSY 85 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~~-~~~~v~i~~p~~~~~i~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~ 85 (263)
.+++..+.+|+ +||||+++.++ +.+.++|++++++++++.++. ..+..++...... ....+..++++.+ |+.
T Consensus 17 ~~p~~~~~~l~-~~Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~-g~~ 94 (404)
T 1jfb_A 17 PEPPAEFAKLR-ATNPVSQVKLFDGSLAWLVTKHKDVCFVATSEKLSKVRTRQGFPELSASGKQAAKAKPTFVDMD-PPE 94 (404)
T ss_dssp TSCCTHHHHHH-HHCSEEEEECTTSCEEEEECSHHHHHHHHHCTTEECCTTSTTCCCCSHHHHHHTTSCCCGGGCC-TTH
T ss_pred CCccHHHHHHH-HhCCeeeeecCCCCceEEEecHHHHHHHHcCCcccccccccCCccccccccchhcccCcccccC-chh
Confidence 47888999996 59999999874 566778999999999997653 2233333221110 0111222566664 999
Q ss_pred HHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHHHHHHHHHHHccccCCCcchH
Q 041575 86 WRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRYTSQEGTD 165 (263)
Q Consensus 86 w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~~~~~~~~ 165 (263)
|+++||++++ .|++.+++.+.+.+.++++++++.|.+. ...+.++|+...+...+.++++..+||.+++. .+
T Consensus 95 h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~~~----~~~~~~~d~~~~~~~~~~~~i~~~~~G~~~~~---~~ 166 (404)
T 1jfb_A 95 HMHQRSMVEP-TFTPEAVKNLQPYIQRTVDDLLEQMKQK----GCANGPVDLVKEFALPVPSYIIYTLLGVPFND---LE 166 (404)
T ss_dssp HHHHHTTTGG-GGSHHHHHHHHHHHHHHHHHHHHHHHHH----CSTTSCEEHHHHTTTHHHHHHHHHHHTCCGGG---HH
T ss_pred HHHHHHHhhh-hcCHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCCCccHHHHHHHHHHHHHHHHHcCCCHHH---HH
Confidence 9999999997 7999999999999999999999999742 22245799999999999999999999987632 22
Q ss_pred HHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHhccccc
Q 041575 166 LHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSLLYDN 245 (263)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~~~~~~ 245 (263)
+..... ..+. . +.+ ..+...+....+.+++.+.|+++++. ..+|+++.|+++..+
T Consensus 167 ~~~~~~---~~~~--------~---~~~---~~~~~~~~~~~~~~~~~~~i~~r~~~-------~~~d~l~~ll~~~~~- 221 (404)
T 1jfb_A 167 YLTQQN---AIRT--------N---GSS---TAREASAANQELLDYLAILVEQRLVE-------PKDDIISKLCTEQVK- 221 (404)
T ss_dssp HHHHHH---HHHH--------C---TTS---CHHHHHHHHHHHHHHHHHHHHHHHHS-------CCSSHHHHHHHHTTT-
T ss_pred HHHHHH---HHHh--------c---cCc---chHHHHHHHHHHHHHHHHHHHHHHhC-------CCCcHHHHHHHhhcc-
Confidence 222211 1110 1 111 13455667778899999999988764 236999999975432
Q ss_pred cccCCCCCchhhhhhhc
Q 041575 246 AKQLPDSDADTVIKALC 262 (263)
Q Consensus 246 ~~~~~~~l~~~~i~~~~ 262 (263)
+..+++++|.+++
T Consensus 222 ----~~~l~~~ei~~~~ 234 (404)
T 1jfb_A 222 ----PGNIDKSDAVQIA 234 (404)
T ss_dssp ----TTSSCHHHHHHHH
T ss_pred ----CCCCCHHHHHHHH
Confidence 2469999998765
No 43
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.50A {Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A* 3cv9_A*
Probab=99.88 E-value=5.2e-21 Score=153.98 Aligned_cols=205 Identities=9% Similarity=0.103 Sum_probs=149.9
Q ss_pred CchhHHHHHHHhhc-CCeEEEEe-cCeeEEEecCHHHHHHHHhhCCccccCCcchhhhhh-------hhcCccccccCCC
Q 041575 12 EPTHRILGNMANKY-GPIFTMKM-GVNRALVVSNSEITKECFTTNDKALASRPRRMAMEI-------LGYNFLATPSSPY 82 (263)
Q Consensus 12 ~~~~~~~~~~~~~y-G~i~~~~~-~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 82 (263)
.+++..+.+| ++| |||+++++ |+.+.++|+||+++++||.++ .+++++....... ......++++. +
T Consensus 24 ~~p~~~~~~l-~~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 99 (412)
T 2zbx_A 24 YQLPDGYAQL-RDTPGPLHRVTLYDGRQAWVVTKHEAARKLLGDP--RLSSNRTDDNFPATSPRFEAVRESPQAFIGL-D 99 (412)
T ss_dssp TSCCHHHHHH-HHSSSSEEEEECTTSCEEEEECSHHHHHHHHTCT--TEECCTTSTTSCCCSGGGC----CCCCGGGC-C
T ss_pred cChHHHHHHH-HhcCCCeEeeccCCCCcEEEEecHHHHHHHHcCc--ccccCcccccccccccccccccccccccccC-C
Confidence 6789999999 788 99999997 888999999999999999654 2444432111110 00012256655 5
Q ss_pred ChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHH-HHHHHHHHHHHHccccCCC
Q 041575 83 GSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLE-GTTFDIIIRIIEGKRYTSQ 161 (263)
Q Consensus 83 g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~-~~~~~vi~~~~fG~~~~~~ 161 (263)
|+.|+++|+++++ .|++.+++.+.+.+.+.++++++.|.+ .+.++|+...+. .+++++|+. +||.+.+
T Consensus 100 g~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~~-------~g~~~d~~~~~~~~~~~~vi~~-~~G~~~~-- 168 (412)
T 2zbx_A 100 PPEHGTRRRMTIS-EFTVKRIKGMRPEVEEVVHGFLDEMLA-------AGPTADLVSQFALPVPSMVICR-LLGVPYA-- 168 (412)
T ss_dssp TTHHHHHHTTTGG-GGSHHHHHHHHHHHHHHHHHHHHHHHH-------HCSCEEHHHHTTTHHHHHHHHH-HHTCCGG--
T ss_pred cHHHHHHHHHhhh-hcCHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCccHHHHHHHHHHHHHHHH-HcCCCHH--
Confidence 9999999999998 799999999999999999999999973 134799998886 499999997 6998763
Q ss_pred cchHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHhc
Q 041575 162 EGTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSL 241 (263)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~~ 241 (263)
+.+.+...+..+... .+ . ++..+....+.+++.+.|+++++. ..+|+++.|+++
T Consensus 169 ~~~~~~~~~~~~~~~---------------~~--~--~~~~~~~~~~~~~~~~~i~~r~~~-------~~~d~l~~ll~~ 222 (412)
T 2zbx_A 169 DHEFFQDASKRLVQS---------------TD--A--QSALTARNDLAGYLDGLITQFQTE-------PGAGLVGALVAD 222 (412)
T ss_dssp GHHHHHHHHHHHHHC---------------SS--H--HHHHHHHHHHHHHHHHHHHHHHHS-------CCSSHHHHHHHT
T ss_pred HHHHHHHHHHHHhcc---------------Cc--H--HHHHHHHHHHHHHHHHHHHHHHhC-------CCCCHHHHHHHh
Confidence 223444443332210 01 1 455667778889999999988764 236999999987
Q ss_pred cccccccCCCCCchhhhhhhc
Q 041575 242 LYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 242 ~~~~~~~~~~~l~~~~i~~~~ 262 (263)
..+ +..+++++|.+++
T Consensus 223 ~~~-----~~~ls~~ei~~~~ 238 (412)
T 2zbx_A 223 QLA-----NGEIDREELISTA 238 (412)
T ss_dssp TTT-----TTSSCHHHHHHHH
T ss_pred ccc-----CCCCCHHHHHHHH
Confidence 542 3579999998765
No 44
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding; HET: HEM; 2.30A {Streptomyces avermitilis}
Probab=99.88 E-value=1.5e-21 Score=156.94 Aligned_cols=205 Identities=8% Similarity=0.069 Sum_probs=145.6
Q ss_pred CchhHHHHHHHhhcCCeEEEEe-cCeeEEEecCHHHHHHHHhhCCccccCCcchhhhhh---hhc----CccccccCCCC
Q 041575 12 EPTHRILGNMANKYGPIFTMKM-GVNRALVVSNSEITKECFTTNDKALASRPRRMAMEI---LGY----NFLATPSSPYG 83 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~g 83 (263)
.+++..+.+| ++||||+++++ |+.++|+|+||+++++||.++ .|.+++....... +.. ...++++. +|
T Consensus 24 ~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g 99 (408)
T 3abb_A 24 YQPPKAYEER-RGESPLTQVTLFDGRPAWLITGHAEGRALLVDP--RLSSDWGHPDFPVVVRRTEDRGGLAFPLIGV-DD 99 (408)
T ss_dssp TSCCHHHHHH-CCSSSEEEEECTTSCEEEEECCHHHHHHHHTCT--TEECCTTSTTCCCCC---------CCTTTTC-CT
T ss_pred cCchHHHHHH-HhcCCeeeeecCCCCcEEEEeCHHHHHHHHcCC--CcccccccccccccccCCccccccccccccC-Cc
Confidence 6889999999 89999999997 888999999999999999653 2444432110000 110 11255555 59
Q ss_pred hhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHH-HHHHHHHHHHHHccccCCCc
Q 041575 84 SYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLE-GTTFDIIIRIIEGKRYTSQE 162 (263)
Q Consensus 84 ~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~-~~~~~vi~~~~fG~~~~~~~ 162 (263)
+.|+++|+++++ .|++.+++.+.+.+.++++++++.|.+ .+.++|+...+. .+++++|+. +||.+++ +
T Consensus 100 ~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~~-------~g~~~d~~~~~~~~~~~~vi~~-~~G~~~~--~ 168 (408)
T 3abb_A 100 PVHARQRRMLIP-SFGVKRMNAIRPRLQSLVDRLLDDMLA-------KGPGADLVSAFALPVPSVAICE-LLGVPYG--D 168 (408)
T ss_dssp THHHHHHHHHGG-GGCHHHHHHHHHHHHHHHHHHHHHHHH-------TCSCEEHHHHTTTHHHHHHHHH-HHTCCGG--G
T ss_pred hHHHHHHHHhhh-hcCHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCeehHHHHHHHHHHHHHHH-HhCCCHH--H
Confidence 999999999998 799999999999999999999999973 234799998876 599999997 6998763 2
Q ss_pred chHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHhcc
Q 041575 163 GTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSLL 242 (263)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~~~ 242 (263)
.+.+...+..+... ..| ++..+....+.+++.+.|+++++. ..+|+++.|+++.
T Consensus 169 ~~~~~~~~~~~~~~--------~~~-----------~~~~~~~~~~~~~~~~~i~~r~~~-------~~~d~l~~ll~~~ 222 (408)
T 3abb_A 169 HDFFEECSRNFVGA--------ATS-----------AEADAAFGELYTYLHGLVGRKQAE-------PEDGLLDELIARQ 222 (408)
T ss_dssp HHHHHHHHHHHC-------------------------CCSSHHHHHHHHHHHHHHHHHHS-------CCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--------cch-----------HHHHHHHHHHHHHHHHHHHHHHhC-------CCCCHHHHHHhcc
Confidence 23344333322110 001 122234566788888888888763 2369999999875
Q ss_pred ccccccCCCCCchhhhhhhc
Q 041575 243 YDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 243 ~~~~~~~~~~l~~~~i~~~~ 262 (263)
.+ +..+++++|.+++
T Consensus 223 ~~-----~~~ls~~ei~~~~ 237 (408)
T 3abb_A 223 LE-----EGDLDHDEVVMIA 237 (408)
T ss_dssp HT-----SSSCCHHHHHHHH
T ss_pred cC-----CCCCCHHHHHHHH
Confidence 42 3469999998765
No 45
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12; 1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Probab=99.88 E-value=2.9e-21 Score=155.81 Aligned_cols=213 Identities=12% Similarity=0.085 Sum_probs=151.2
Q ss_pred CchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchhhh-hhhh-------cCccccccCCCC
Q 041575 12 EPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRMAM-EILG-------YNFLATPSSPYG 83 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~g 83 (263)
.+++.++.+| ++||||+++.+| .++|++|+++++|+.+ ...+++++..... ...+ ....++++.+ |
T Consensus 29 ~~p~~~~~~l-r~~gpv~~~~~g---~~vv~~~~~v~~vl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d-g 102 (418)
T 3r9b_A 29 ADPYPIYDRI-RRGGPLALPEAN---LAVFSSFSDCDDVLRH-PSSCSDRTKSTIFQRQLAAETQPRPQGPASFLFLD-P 102 (418)
T ss_dssp TCCHHHHHHH-HHHCCEEEGGGT---EEEECSHHHHHHHHHC-TTEECCGGGCHHHHHHHC---------CCCGGGCC-T
T ss_pred cCchHHHHHH-HhcCCEEECCCC---eEEEecHHHHHHHHcC-cccccCcccccccccccccccccccccccchhhcC-C
Confidence 6889999998 578999998765 8999999999999954 4444555533221 1111 1223566665 9
Q ss_pred hhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHH-HHHHHHHHHHHHHccccCCCc
Q 041575 84 SYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWL-EGTTFDIIIRIIEGKRYTSQE 162 (263)
Q Consensus 84 ~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~ 162 (263)
+.|+++|+++++ .|++.+++.+.+.+.+.++++++ +. . +.++|+...+ ..+++++|+. +||.+.+ +
T Consensus 103 ~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~ll~-l~------~--~~~~d~~~~~~~~~~~~vi~~-~~G~~~~--~ 169 (418)
T 3r9b_A 103 PDHTRLRGLVSK-AFAPRVIKRLEPEITALVDQLLD-AV------D--GPEFNLIDNLAYPLPVAVICR-LLGVPIE--D 169 (418)
T ss_dssp THHHHHHHHHHG-GGSHHHHGGGHHHHHHHHHHHHH-TC------C--SSEEEHHHHTTTHHHHHHHHH-HHTCCGG--G
T ss_pred chHHHHHHHhhh-hhCHHHHHHHHHHHHHHHHHHHh-hh------c--cCCeehHHHHhCcCCHHHHHH-HcCCCHH--H
Confidence 999999999997 79999999999999999999999 74 2 2379976554 6899999999 8998763 3
Q ss_pred chHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHhcc
Q 041575 163 GTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSLL 242 (263)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~~~ 242 (263)
.+.+......+...+.. ++.+.+++ ....++..+..+.+.+++.+.|+++++. ..+|+++.|+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~i~~r~~~-------~~~d~l~~ll~~~ 235 (418)
T 3r9b_A 170 EPKFSRASALLAAALDP------FLALTGET-SDLFDEQMKAGMWLRDYLRALIDERRRT-------PGEDLMSGLVAVE 235 (418)
T ss_dssp HHHHHHHHHHHHHTTSC------HHHHHSSC-CTTHHHHHHHHHHHHHHHHHHHHHTTTS-------CCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCc------cccccccC-HHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCccHHHHHHHhh
Confidence 34455544444332211 11112223 2335667778888999999999887653 3479999999874
Q ss_pred ccccccCCCCCchhhhhhhc
Q 041575 243 YDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 243 ~~~~~~~~~~l~~~~i~~~~ 262 (263)
.+ +..++++||.+++
T Consensus 236 ~~-----~~~ls~~ei~~~~ 250 (418)
T 3r9b_A 236 ES-----GDQLTEDEIIATC 250 (418)
T ss_dssp HH-----SSSCCHHHHHHHH
T ss_pred hc-----cCCCCHHHHHHHH
Confidence 33 3569999998865
No 46
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105, oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea recticatena}
Probab=99.88 E-value=4.3e-21 Score=154.42 Aligned_cols=206 Identities=13% Similarity=0.130 Sum_probs=148.6
Q ss_pred CchhHHHHHHHhhcCCeEEEEe-cCeeEEEecCHHHHHHHHhhCCccccCCcchhh-------hhhhh--cCccc-cccC
Q 041575 12 EPTHRILGNMANKYGPIFTMKM-GVNRALVVSNSEITKECFTTNDKALASRPRRMA-------MEILG--YNFLA-TPSS 80 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~-------~~~~~--~~~~~-~~~~ 80 (263)
.+++..+.+|+ +||||+++++ |+.+++++++|+++++++.+ ..|++++.... ..... ..+.+ +++.
T Consensus 22 ~~p~~~~~~l~-~~Gpv~~~~~~g~~~~vvv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 98 (413)
T 2z36_A 22 FAPPAAYERLR-ERAPINKVRLTSGGQAWWVSGHEEARAVLAD--GRFSSDKRKDGFPLFTLDAATLQQLRSQPPLMLGM 98 (413)
T ss_dssp TBCCHHHHHHH-HHCSEEEEEETTSCEEEEECSHHHHHHHHHC--TTEECCTTSTTCCCSSCCHHHHHHHTTSCCCGGGC
T ss_pred cCchHHHHHHH-HcCCeeEeecCCCceEEEEecHHHHHHHHcC--CCcccCccccCcccccccccccccccccccccccc
Confidence 58899999997 7899999997 88899999999999999965 35666653211 11110 01235 6666
Q ss_pred CCChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHH-HHHHHHHHHHHHccccC
Q 041575 81 PYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLE-GTTFDIIIRIIEGKRYT 159 (263)
Q Consensus 81 ~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~-~~~~~vi~~~~fG~~~~ 159 (263)
+|+.|+++|+++++ .|++.+++.+.+.+.++++++++.|.+ ..+.++|+...+. .+++++|+.+ ||.+++
T Consensus 99 -~g~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~ll~~l~~------~~~~~~d~~~~~~~~~~~~vi~~~-~G~~~~ 169 (413)
T 2z36_A 99 -DGAEHSAARRPVIG-EFTVKRLAALRPRIQDIVDHFIDDMLA------TDQRPVDLVQALSLPVPSLVICEL-LGVPYT 169 (413)
T ss_dssp -CHHHHHHHHHHHHG-GGSHHHHHHHHHHHHHHHHHHHHHHTT------CSCSSEEHHHHTTTHHHHHHHHHH-HTCCGG
T ss_pred -CchHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHHHHHHHHH------hcCCCccHHHHHhhhhHHHHHHHH-hCCCHH
Confidence 49999999999998 699999999999999999999999962 1245799986654 6999999995 998763
Q ss_pred CCcchHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHH
Q 041575 160 SQEGTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVML 239 (263)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll 239 (263)
+.+.+......+ +. ... . ++..+....+.+++.+.|+++++. ..+|+++.|+
T Consensus 170 --~~~~~~~~~~~~------------~~---~~~--~--~~~~~~~~~~~~~~~~~i~~r~~~-------~~~dll~~ll 221 (413)
T 2z36_A 170 --DHDFFQSRTTMM------------VS---RTS--M--EDRRRAFAELRAYIDDLITRKESE-------PGDDLFSRQI 221 (413)
T ss_dssp --GHHHHHHHHHHT------------TC---SSC--H--HHHHHHHHHHHHHHHHHHHHHHSS-------CCSSHHHHHH
T ss_pred --HHHHHHHHHHHH------------hc---ccC--c--HHHHHHHHHHHHHHHHHHHHHHhC-------CCCCHHHHHH
Confidence 222332222111 00 000 1 455666778889999999888753 2369999999
Q ss_pred hccccccccCCCCCchhhhhhhc
Q 041575 240 SLLYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 240 ~~~~~~~~~~~~~l~~~~i~~~~ 262 (263)
++..+ +..+++++|.+++
T Consensus 222 ~~~~~-----~~~ls~~ei~~~~ 239 (413)
T 2z36_A 222 ARQRQ-----EGTLDHAGLVSLA 239 (413)
T ss_dssp HHHHH-----HSCCCHHHHHHHH
T ss_pred HhhcC-----CCCCCHHHHHHHH
Confidence 87432 2469999998765
No 47
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron, metal-binding, oxidoreductase; HET: HEM; 1.35A {Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A* 3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Probab=99.88 E-value=9.2e-22 Score=159.29 Aligned_cols=209 Identities=10% Similarity=0.018 Sum_probs=143.8
Q ss_pred CchhHHHHHHHhhcCCeEEEE--------ecCeeEEEecCHHHHHHHHhhCCccccCCcchhhhh--------hhhcCcc
Q 041575 12 EPTHRILGNMANKYGPIFTMK--------MGVNRALVVSNSEITKECFTTNDKALASRPRRMAME--------ILGYNFL 75 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~--------~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~--------~~~~~~~ 75 (263)
.+++..+.++ ++||||+++. +|+.++++|++|+++++|+. +...|++++...... .......
T Consensus 37 ~~p~~~~~~l-r~~gPv~~~~~~~g~~~~lG~~~~~vv~~~~~v~~vl~-~~~~fs~~~~~~~~~~~~~~~~~~~~~~~~ 114 (433)
T 3ivy_A 37 RLPVAEFAEL-RSAAPIWWNGQDPGKGGGFHDGGFWAITKLNDVKEISR-HSDVFSSYENGVIPRFKNDIAREDIEVQRF 114 (433)
T ss_dssp CCCHHHHHHH-HHHCSEEEEECCTTCSTTCCSSEEEEECSHHHHHHHHH-CTTTEESTTTCSCCCCCTTCCHHHHHGGGG
T ss_pred CCccHHHHHH-HhcCCEEecccccccccccCCCCEEEEecHHHHHHHHc-ChhhccCCcccccccccccccccccccccC
Confidence 4589999999 7899999998 55579999999999999995 446677665432111 1112223
Q ss_pred ccccCCCChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHH-HHHHHHHHHHHHH
Q 041575 76 ATPSSPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWL-EGTTFDIIIRIIE 154 (263)
Q Consensus 76 ~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~f 154 (263)
+++.. +|+.|+++|+++++ .|++..++.+.+.+.+.++++++.|.+ +.++|+...+ ..+++++|+.+ |
T Consensus 115 ~l~~~-dg~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~ll~~l~~--------~~~~d~~~~~~~~~~~~vi~~l-~ 183 (433)
T 3ivy_A 115 VMLNM-DAPHHTRLRKIISR-GFTPRAVGRLHDELQERAQKIAAEAAA--------AGSGDFVEQVSCELPLQAIAGL-L 183 (433)
T ss_dssp SGGGC-CTTHHHHHHHHHGG-GSCHHHHHTTHHHHHHHHHHHHHHHHH--------HCEEEHHHHTTSHHHHHHHHHH-H
T ss_pred Ccccc-ChHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHHHHHHHhh--------CCCeeHHHHHHHHHHHHHHHHH-c
Confidence 56655 49999999999997 799999999999999999999999962 1369998888 99999999996 9
Q ss_pred ccccCCCcchHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcH
Q 041575 155 GKRYTSQEGTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDF 234 (263)
Q Consensus 155 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ 234 (263)
|.+. .+.+.+... ...+. ....|.+.. .+..+....+.+++.++|+++++. +.+|+
T Consensus 184 G~~~--~~~~~~~~~----~~~~~----~~~~p~~~~-------~~~~~~~~~~~~~~~~~i~~r~~~-------~~~dl 239 (433)
T 3ivy_A 184 GVPQ--EDRGKLFHW----SNEMT----GNEDPEYAH-------IDPKASSAELIGYAMKMAEEKAKN-------PADDI 239 (433)
T ss_dssp TCCH--HHHHHHHHH----HTTCS----CCCCGGGTT-------CCHHHHHHHHHHHHHHHHHHC--------------C
T ss_pred CCCH--HHHHHHHHH----HHHHh----ccCCchhhh-------HHHHHHHHHHHHHHHHHHHHHhcC-------CCCcH
Confidence 9643 111122211 11111 111221110 134456677888999999887653 23699
Q ss_pred HHHHHhccccccccCCCCCchhhhhhhc
Q 041575 235 IYVMLSLLYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 235 l~~ll~~~~~~~~~~~~~l~~~~i~~~~ 262 (263)
++.|+++..+ +..++++||.+++
T Consensus 240 l~~ll~~~~~-----~~~ls~~ei~~~~ 262 (433)
T 3ivy_A 240 VTQLIQADID-----GEKLSDDEFGFFV 262 (433)
T ss_dssp HHHHHSCC-------CCCCCHHHHHHHH
T ss_pred HHHHHhhhcC-----CCCCCHHHHHHHH
Confidence 9999987543 3579999998765
No 48
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A {Amycolatopsis orientalis} SCOP: a.104.1.1
Probab=99.88 E-value=5.5e-21 Score=153.54 Aligned_cols=204 Identities=12% Similarity=0.110 Sum_probs=146.5
Q ss_pred CchhHHHHHHHhhcCCeEEEE----e-cC-eeEEEecCHHHHHHHH-hhCCccccCCcchhhhh-hhhc---CccccccC
Q 041575 12 EPTHRILGNMANKYGPIFTMK----M-GV-NRALVVSNSEITKECF-TTNDKALASRPRRMAME-ILGY---NFLATPSS 80 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~----~-~~-~~~v~i~~p~~~~~i~-~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~ 80 (263)
.+++..+.+| ++||||++++ + ++ .++|+++||+++++|| .++ .|.+++...... .+.. ...++++.
T Consensus 24 ~~p~~~~~~l-~~yGpv~~~~~~~~~~~~~~~~vvv~~~~~i~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 100 (406)
T 1ued_A 24 CDPHEDNFGL-RAHGPLVRIVGESSTQLGRDFVWQAHGYEVVRRILGDHE--HFTTRPQFTQSKSGAHVEAQFVGQISTY 100 (406)
T ss_dssp TEECHHHHHH-HTTCSEEEEESHHHHHTTSSCEEEECSHHHHHHHHHCCS--SEECCCCC---------CGGGTTCGGGC
T ss_pred CCcHHHHHHH-HHhCCeeeecccccCCCCCccEEEEcCHHHHHHHHhhCc--cccccccccccccccccccccccccccC
Confidence 5789999999 9999999999 6 77 8999999999999999 443 355554311110 1110 11256665
Q ss_pred CCChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHH-HHHHHHHHHHHccccC
Q 041575 81 PYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEG-TTFDIIIRIIEGKRYT 159 (263)
Q Consensus 81 ~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~-~~~~vi~~~~fG~~~~ 159 (263)
+|+.|+++|+++++ .|++.+++.+.+.+.++++++++.|.+ .+.++|+.+.+.. +++++|+ .+||.+.+
T Consensus 101 -~g~~~~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~~-------~g~~~d~~~~~~~~~~~~vi~-~~~G~~~~ 170 (406)
T 1ued_A 101 -DPPEHTRLRKMLTP-EFTVRRIRRMEPAIQSLIDDRLDLLEA-------EGPSADLQGLFADPVGAHALC-ELLGIPRD 170 (406)
T ss_dssp -CTTHHHHHHHHHGG-GSSHHHHHHHHHHHHHHHHHHHHHHHH-------HCTTEEHHHHTHHHHHHHHHH-HHHTCCHH
T ss_pred -CCHHHHHHHHHhhh-hhCHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCeeHHHHHHHHhHHHHHH-HHcCCCHH
Confidence 59999999999998 799999999999999999999999962 2347999998875 9999999 47998642
Q ss_pred CCcchHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHH
Q 041575 160 SQEGTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVML 239 (263)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll 239 (263)
+.+.+...+..+.. . ..+ .++..+....+.+++.+.|+++++. ..+|+++.|+
T Consensus 171 --~~~~~~~~~~~~~~----~----------~~~----~~~~~~~~~~~~~~~~~~i~~r~~~-------~~~d~l~~ll 223 (406)
T 1ued_A 171 --DQREFVRRIRRNAD----L----------SRG----LKARAADSAAFNRYLDNLLARQRAD-------PDDGLLGMIV 223 (406)
T ss_dssp --HHHHHHHHHHHCC-----------------CC----HHHHHHHHHHHHHHHHHHHHHHHHS-------CCSSHHHHHH
T ss_pred --HHHHHHHHHHHHHh----c----------cCC----HHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCHHHHHH
Confidence 22233332222111 0 011 2456667788899999999988763 2369999999
Q ss_pred hccccccccCCCCCchhhhhhhc
Q 041575 240 SLLYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 240 ~~~~~~~~~~~~~l~~~~i~~~~ 262 (263)
++. + ..+++++|.+++
T Consensus 224 ~~~-~------~~ls~~ei~~~~ 239 (406)
T 1ued_A 224 RDH-G------DNVTDEELKGLC 239 (406)
T ss_dssp HHH-G------GGSCHHHHHHHH
T ss_pred Hhc-C------CCCCHHHHHHHH
Confidence 864 2 258999988765
No 49
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB: 2z3u_A* 3a1l_A*
Probab=99.88 E-value=6.1e-21 Score=154.09 Aligned_cols=212 Identities=12% Similarity=0.047 Sum_probs=147.8
Q ss_pred CchhHHHHHHHhhcCCeEEEEec--CeeEEEecCHHHHHHHHhhCCccccCCcch--------h--hh---h-hhhcCcc
Q 041575 12 EPTHRILGNMANKYGPIFTMKMG--VNRALVVSNSEITKECFTTNDKALASRPRR--------M--AM---E-ILGYNFL 75 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~~--~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~--------~--~~---~-~~~~~~~ 75 (263)
.+++.++.++++ ||||+++++| +.+.++|+||+++++|+.++ .|++++.. . .. . .....+.
T Consensus 20 ~~p~~~~~~l~~-~Gpv~~~~~g~~~~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (425)
T 2z3t_A 20 ADPYPVYRRYRE-AAPVHRTASGPGKPDTYYVFTYDDVVRVLSNR--RLGRNARVASGDTDTAPVPIPTEHRALRTVVEN 96 (425)
T ss_dssp HCCHHHHHHHHH-HCSEEEECCCSSCCCEEEECSHHHHHHHHHCT--TEESSCCCC---------------CHHHHHHTT
T ss_pred cChHHHHHHHHh-cCCeEeccccCCCCCeEEEcCHHHHHHHHcCC--Ccccccccccccccccccccccccccccccccc
Confidence 467889999865 9999999987 67899999999999999653 67776531 0 00 0 0111113
Q ss_pred ccccCCCChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHH-HHHHHHHHHHHHHH
Q 041575 76 ATPSSPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHW-LEGTTFDIIIRIIE 154 (263)
Q Consensus 76 ~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~-~~~~~~~vi~~~~f 154 (263)
++++.+ |+.|+++|+++++ .|++.+++.+.+.+.+.++++++.|.+ . + ++|+... ...+++++|+.+ |
T Consensus 97 ~l~~~d-g~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~ll~~l~~------~-g-~~dl~~~~~~~~~~~vi~~~-~ 165 (425)
T 2z3t_A 97 WLVFLD-PPHHTELRSLLTT-EFSPSIVTGLRPRIAELASALLDRLRA------Q-R-RPDLVEGFAAPLPILVISAL-L 165 (425)
T ss_dssp CGGGCC-HHHHHHHHHHHHG-GGSHHHHHHHHHHHHHHHHHHHHHHTT------S-S-SCBHHHHTTTHHHHHHHHHH-H
T ss_pred ccccCC-chHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHHHHHHHHh------c-C-CccHHHHHHHHHHHHHHHHH-h
Confidence 667665 9999999999998 799999999999999999999999962 2 2 7999875 478999999998 9
Q ss_pred ccccCCCcchHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcH
Q 041575 155 GKRYTSQEGTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDF 234 (263)
Q Consensus 155 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ 234 (263)
|.+++ +.+.+......+...+ ..+| ++ ....++..+....+.+++.+.|+++++. ..+|+
T Consensus 166 G~~~~--~~~~~~~~~~~~~~~~------~~~~----~~-~~~~~~~~~~~~~~~~~~~~~i~~r~~~-------~~~dl 225 (425)
T 2z3t_A 166 GIPEE--DHTWLRANAVALQEAS------TTRA----RD-GRGYARAEAASQEFTRYFRREVDRRGGD-------DRDDL 225 (425)
T ss_dssp TCCGG--GHHHHHHHHHHHHTTC------TTCC----C----HHHHHHHHHHHHHHHHHHHHCC--------------CH
T ss_pred CCCHH--HHHHHHHHHHHHHhhc------cccC----CC-HHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCH
Confidence 98763 2334444443332211 1112 11 1223456677778888888888877653 23699
Q ss_pred HHHHHhccccccccCCCCCchhhhhhhc
Q 041575 235 IYVMLSLLYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 235 l~~ll~~~~~~~~~~~~~l~~~~i~~~~ 262 (263)
++.|+++..+ +..+++++|.+++
T Consensus 226 l~~ll~~~~~-----~~~ls~~el~~~~ 248 (425)
T 2z3t_A 226 LTLLVRARDT-----GSPLSVDGIVGTC 248 (425)
T ss_dssp HHHHHHHHHT-----TCCCCHHHHHHHH
T ss_pred HHHHHHhhcc-----CCCCCHHHHHHHH
Confidence 9999987532 3579999998765
No 50
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide antibiotics, 12- and 14- carbon macrolactone monooxygenase, heme; HET: HEM; 1.92A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.87 E-value=1.6e-20 Score=151.10 Aligned_cols=206 Identities=15% Similarity=0.137 Sum_probs=150.2
Q ss_pred CchhHHHHHHHhhcCCeEEEEe-cCeeEEEecCHHHHHHHHhhCCccccCCc-chhhh---h------hhh-cC-ccccc
Q 041575 12 EPTHRILGNMANKYGPIFTMKM-GVNRALVVSNSEITKECFTTNDKALASRP-RRMAM---E------ILG-YN-FLATP 78 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~i~~p~~~~~i~~~~~~~~~~~~-~~~~~---~------~~~-~~-~~~~~ 78 (263)
.+++..+.+| ++||||+++++ |+.+.++++||+++++||.++. +++++ .+... . .++ .. ..+++
T Consensus 17 ~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 93 (411)
T 1gwi_A 17 TDLDGESARL-RAAGPLAAVELPGGVPVWAVTHHAEAKALLTDPR--LVKDINVWGAWRRGEIPADWPLIGLANPGRSML 93 (411)
T ss_dssp SCHHHHHHHH-HHTCSEEEEEETTTEEEEEECSHHHHHHHHTCTT--EECCGGGCHHHHTTCSCTTCTTHHHHSCCSSGG
T ss_pred CChHHHHHHH-HHhCCeeeeecCCCccEEEEeCHHHHHHHHcCCc--cccCcccccccccccCCcccchhhhhccccccc
Confidence 6799999999 99999999997 8899999999999999996543 34443 11100 0 010 01 22555
Q ss_pred cCCCChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHH-HHHHHHHHHHHHccc
Q 041575 79 SSPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLE-GTTFDIIIRIIEGKR 157 (263)
Q Consensus 79 ~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~-~~~~~vi~~~~fG~~ 157 (263)
+. +|+.|+++|+++++ .|++.+++.+.+.+.+.++++++.|.+ .+.++|+...+. .+++++|+. +||.+
T Consensus 94 ~~-~g~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~~-------~~~~~d~~~~~~~~~~~~vi~~-~~G~~ 163 (411)
T 1gwi_A 94 TV-DGAEHRRLRTLVAQ-ALTVRRVEHMRGRITELTDRLLDELPA-------DGGVVDLKAAFAYPLPMYVVAD-LMGIE 163 (411)
T ss_dssp GC-CHHHHHHHHHHHTT-TSCHHHHHTTHHHHHHHHHHHHHTSCC-------SCCCEEHHHHTTTHHHHHHHHH-HHTCC
T ss_pred cC-CcHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHHHH-------cCCCcchHHHHhhHHHHHHHHH-HhCCC
Confidence 55 59999999999997 799999999999999999999999851 245799998876 599999996 79987
Q ss_pred cCCCcchHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHH
Q 041575 158 YTSQEGTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYV 237 (263)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ 237 (263)
.+ +.+.+......+... ..+ .++..+....+.+++.+.|+++++. +.+|+++.
T Consensus 164 ~~--~~~~~~~~~~~~~~~--------------~~~----~~~~~~~~~~~~~~~~~~i~~r~~~-------~~~d~l~~ 216 (411)
T 1gwi_A 164 EA--RLPRLKVLFEKFFST--------------QTP----PEEVVATLTELASIMTDTVAAKRAA-------PGDDLTSA 216 (411)
T ss_dssp GG--GHHHHHHHHHHHHCT--------------TSC----HHHHHHHHHHHHHHHHHHHHHHHHS-------CCSSHHHH
T ss_pred HH--HHHHHHHHHHHHhcc--------------CCC----hHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCHHHH
Confidence 63 233444443333220 011 2445667778889999999988753 23699999
Q ss_pred HHhccccccccCCCCCchhhhhhhc
Q 041575 238 MLSLLYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 238 ll~~~~~~~~~~~~~l~~~~i~~~~ 262 (263)
|+++..+ +..+++++|.+++
T Consensus 217 ll~~~~~-----~~~l~~~~i~~~~ 236 (411)
T 1gwi_A 217 LIQASEN-----GDHLTDAEIVSTL 236 (411)
T ss_dssp HHHCCBT-----TBCCCHHHHHHHH
T ss_pred HHHhccc-----CCCCCHHHHHHHH
Confidence 9987542 3469999998765
No 51
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A {Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Probab=99.87 E-value=2.2e-21 Score=155.99 Aligned_cols=205 Identities=7% Similarity=0.061 Sum_probs=146.1
Q ss_pred CchhHHHHHHHhhcCCeEEEEecC--eeEEEecCHHHHHHHHhhCCccccCCcchhh----h-hhhhcCccccccCCCCh
Q 041575 12 EPTHRILGNMANKYGPIFTMKMGV--NRALVVSNSEITKECFTTNDKALASRPRRMA----M-EILGYNFLATPSSPYGS 84 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~~~--~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~g~ 84 (263)
.++|..+.+++ +||||+++.+++ .+.++|++|+++++|+.+ ..|.+++.... . ...+....++++. +|+
T Consensus 27 ~~p~~~~~~l~-~~Gpv~~~~~~~g~~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~-dg~ 102 (411)
T 2dkk_A 27 PEFDPVLAELM-REGPLTRVRLPHGEGWAWLATRYDDVKAITND--PRFGRAEVTQRQITRLAPHFKPRPGSLAFA-DQP 102 (411)
T ss_dssp SCCCHHHHHHH-TTCSEEEEECSBSBSCEEEECSHHHHHHHTTC--TTEESGGGGGSCBCBSSSCCCCCTTCSTTC-CTT
T ss_pred ccccHHHHHHH-hcCCeEeeecCCCceeEEEEcCHHHHHHHHcC--CCcccCCCCCCCccccccchhccccccccC-Cch
Confidence 56679999998 799999999754 679999999999999964 35665543210 1 1111002356555 599
Q ss_pred hHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHH-HHHHHHHHHHHHccccCCCcc
Q 041575 85 YWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLE-GTTFDIIIRIIEGKRYTSQEG 163 (263)
Q Consensus 85 ~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~-~~~~~vi~~~~fG~~~~~~~~ 163 (263)
.|+++|+++++ .|++.+++.+.+.+.+.++++++.|.+ .+.++|+...+. .+++++|+. +||.+++ +.
T Consensus 103 ~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~~-------~g~~~dl~~~~~~~~~~~vi~~-l~G~~~~--~~ 171 (411)
T 2dkk_A 103 DHNRLRRAVAG-AFTVGATKRLRPRAQEILDGLVDGILA-------EGPPADLVERVLEPFPIAVVSE-VMGVPAA--DR 171 (411)
T ss_dssp HHHHHHHHHGG-GSSHHHHHHHHHHHHHHHHHHHHHHHH-------HCSCEEHHHHTTTHHHHHHHHH-HHTCCSS--HH
T ss_pred HHHHHHHHhhH-hhCHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCeehHHHHHHHHHHHHHHH-HhCCCHH--HH
Confidence 99999999998 799999999999999999999999973 234799997775 699999998 5998763 22
Q ss_pred hHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHhccc
Q 041575 164 TDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSLLY 243 (263)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~~~~ 243 (263)
+.+... ...+ ....+ . .++..++...+.+++.++|+++++. +.+|+++.|+++ .
T Consensus 172 ~~~~~~----~~~~-----~~~~~--------~-~~~~~~~~~~l~~~~~~~i~~r~~~-------~~~dll~~ll~~-~ 225 (411)
T 2dkk_A 172 ERVHSW----TRQI-----ISTSG--------G-AEAAERAKRGLYGWITETVRARAGS-------EGGDVYSMLGAA-V 225 (411)
T ss_dssp HHHHHH----HGGG-----CSSCS--------C-SHHHHHHHHHHHHHHHHHHHTTTTC-------CSSCHHHHHHHH-H
T ss_pred HHHHHH----HHHH-----Hhccc--------h-HHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCHHHHHHHh-c
Confidence 222221 1111 01111 1 2455667778888888888876642 236999999987 3
Q ss_pred cccccCCCCCchhhhhhhc
Q 041575 244 DNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 244 ~~~~~~~~~l~~~~i~~~~ 262 (263)
+ +..++++||.+++
T Consensus 226 -~----~~~ls~~el~~~~ 239 (411)
T 2dkk_A 226 -G----RGEVGETEAVGLA 239 (411)
T ss_dssp -H----TTSSCTTSHHHHH
T ss_pred -C----CCCCCHHHHHHHH
Confidence 2 3579999988765
No 52
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase, metal-binding, oxidoreductase, hypothetical protein; HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB: 2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Probab=99.87 E-value=6.8e-21 Score=153.30 Aligned_cols=218 Identities=9% Similarity=0.029 Sum_probs=153.0
Q ss_pred cccccccCC---CCchhHHHHHHHhhcCCeE-----EEEecCeeEEEecCHHHHHHHHhhCCccccCCcchh--hh-hhh
Q 041575 2 IGHLHLFGG---PEPTHRILGNMANKYGPIF-----TMKMGVNRALVVSNSEITKECFTTNDKALASRPRRM--AM-EIL 70 (263)
Q Consensus 2 lG~~~~~~~---~~~~~~~~~~~~~~yG~i~-----~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~--~~-~~~ 70 (263)
.|+.+++.. ..+++.++.+|+ +||||+ ++++ .+.++|++|+++++|+.++ ..|++++... .. ..+
T Consensus 12 ~~~~~~~~~~~~~~~p~~~~~~l~-~~Gpv~~~~~~~~~~--~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~ 87 (414)
T 2uuq_A 12 MSHEFQLATAETWPNPWPMYRALR-DHDPVHHVVPPQRPE--YDYYVLSRHADVWSAARDH-QTFSSAQGLTVNYGELEM 87 (414)
T ss_dssp -CCSCCCCCTTTTTCCHHHHHHHH-HHCSEEEECCTTCGG--GCEEEECSHHHHHHHHHCT-TTEESTTCSSSCTTHHHH
T ss_pred hcCccCcCChhhccCchHHHHHHH-hcCCEEcccccccCC--CCEEEEcCHHHHHHHHcCc-hhccCCCCcccccCcccc
Confidence 456555531 267899999995 689999 8765 5799999999999999764 5677775432 11 122
Q ss_pred -h-cCccccccCCCChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehh-HHHHHHHHH
Q 041575 71 -G-YNFLATPSSPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMK-HWLEGTTFD 147 (263)
Q Consensus 71 -~-~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~-~~~~~~~~~ 147 (263)
+ ..+.++++. +|+.|+++|+++++ .|++.+++.+.+.+.+.++++++.|.+ . .++|+. +++..++++
T Consensus 88 ~~~~~~~~l~~~-~g~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~ll~~l~~-----~---~~vdl~~~~~~~~~~~ 157 (414)
T 2uuq_A 88 IGLHDTPPMVMQ-DPPVHTEFRKLVSR-GFTPRQVETVEPTVRKFVVERLEKLRA-----N---GGGDIVTELFKPLPSM 157 (414)
T ss_dssp HTCSSSCCGGGC-CTTHHHHHHHHHHT-TSSHHHHHHHHHHHHHHHHHHHHHHHH-----T---TEEEHHHHTTTHHHHH
T ss_pred cccccccccccC-CchhHHHHHHHhhh-hcCHHHHHHHHHHHHHHHHHHHHHHHh-----c---CCccHHHHHHHHhHHH
Confidence 2 223367766 49999999999997 799999999999999999999999973 1 269997 566899999
Q ss_pred HHHHHHHccccCCCcchHHHHHHHHHHHhhhcccccccc-cccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 041575 148 IIIRIIEGKRYTSQEGTDLHEHAASFFTLFGKFVVSDAL-PFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSS 226 (263)
Q Consensus 148 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 226 (263)
+|+. +||.+++ +.+.+......+... ..+ |.. +...++...+.+++.+.|+++++.
T Consensus 158 vi~~-~~G~~~~--~~~~~~~~~~~~~~~-------~~~~p~~---------~~~~~~~~~~~~~~~~~i~~r~~~---- 214 (414)
T 2uuq_A 158 VVAH-YLGVPEE--DWTQFDGWTQAIVAA-------NAVDGAT---------TGALDAVGSMMAYFTGLIERRRTE---- 214 (414)
T ss_dssp HHHH-HTTCCGG--GHHHHHHHHHHHHHH-------HHC--------------CCHHHHHHHHHHHHHHHHHHTTS----
T ss_pred HHHH-HhCCCHH--HHHHHHHHHHHHHhh-------cccCCch---------hHHHHHHHHHHHHHHHHHHHHHhC----
Confidence 9999 6998874 333454444433321 011 210 122345567888888888887653
Q ss_pred CCCCCCcHHHHHHhccccccccCCCCCchhhhhhhc
Q 041575 227 EVEGDEDFIYVMLSLLYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 227 ~~~~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~ 262 (263)
+.+|+++.|+++..++ .+..+++++|.+++
T Consensus 215 ---~~~dll~~ll~~~~~~---~~~~ls~~ei~~~~ 244 (414)
T 2uuq_A 215 ---PADDAISHLVAAGVGA---DGDTAGTLSILAFT 244 (414)
T ss_dssp ---CCSSHHHHHHHTTTTC---TTCHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHhccccc---CCCCCCHHHHHHHH
Confidence 2369999999875311 13568999998765
No 53
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A {Streptomyces natalensis} PDB: 2x9p_A*
Probab=99.86 E-value=6.8e-20 Score=146.90 Aligned_cols=199 Identities=12% Similarity=0.101 Sum_probs=144.8
Q ss_pred CchhHHHHHHHhhcCCeEEEEe-cCeeEEEecCHHHHHHHHhhCCccccCCcchh-hhhhhhcCccc--cccCCCC----
Q 041575 12 EPTHRILGNMANKYGPIFTMKM-GVNRALVVSNSEITKECFTTNDKALASRPRRM-AMEILGYNFLA--TPSSPYG---- 83 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~g---- 83 (263)
.+++..+.+| ++||||+++++ ++.+.++|++|+++++|+.++ .|.+++... ....... +.+ +++. +|
T Consensus 26 ~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~-~~~~~l~~~-~g~~~~ 100 (404)
T 2xbk_A 26 LKLSPLLRAL-QDRGPIHRVRTPAGDEAWLVTRHAELKQLLHDE--RIGRTHPDPPSAAQYVR-SPFLDLLIS-DADAES 100 (404)
T ss_dssp TBCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHTTCT--TEESBCSSGGGSCCSSC-CHHHHTTCB-CSCHHH
T ss_pred cCccHHHHHH-HhhCCEeeeccCCCceEEEEcCHHHHHHHHcCC--CCCCCccccccCCcccc-cccccceee-CCCCCC
Confidence 5789999999 89999999997 788999999999999999653 466555321 1111111 224 5555 49
Q ss_pred --hhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHH-HHHHHHHHHHHHHccccCC
Q 041575 84 --SYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWL-EGTTFDIIIRIIEGKRYTS 160 (263)
Q Consensus 84 --~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~ 160 (263)
+.|+++|+++.+ .|++.+++.+.+.+.+.++++++.|.+ .+.++|+...+ ..+++++|+. +||.+++
T Consensus 101 ~~~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~ll~~l~~-------~g~~~d~~~~~~~~~~~~vi~~-~~G~~~~- 170 (404)
T 2xbk_A 101 GRRQHAETRRLLTP-LFSARRVLEMQPKVEEAADTLLDAFIA-------QGPPGDLHGELTVPFALTVLCE-VIGVPPQ- 170 (404)
T ss_dssp HHHHHHHHHHHHGG-GGCHHHHHHHHHHHHHHHHHHHHHHHH-------TCSSEEHHHHTHHHHHHHHHHH-HHTCCGG-
T ss_pred CCchHHHHHHHhhh-hcCHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCeeHHHHHHHHHHHHHHHH-HhCCCHH-
Confidence 999999999998 789999999999999999999999972 23479998766 5799999997 7998763
Q ss_pred CcchHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHh
Q 041575 161 QEGTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLS 240 (263)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~ 240 (263)
+.+.+......+... . .+ + +..++...+.+++.+.|+++++. ..+|+++.| +
T Consensus 171 -~~~~~~~~~~~~~~~---------~-----~~--p---~~~~~~~~~~~~~~~~i~~r~~~-------~~~dll~~l-~ 222 (404)
T 2xbk_A 171 -RRAELTTLLAGIAKL---------D-----DR--E---GAVRAQDDLFGYVAGLVEHKRAE-------PGPDIISRL-N 222 (404)
T ss_dssp -GHHHHHHHHHHHTBS---------S-----CH--H---HHHHHHHHHHHHHHHHHHHHHHS-------CCSSHHHHH-H
T ss_pred -HHHHHHHHHHHHHhc---------c-----Cc--H---HHHHHHHHHHHHHHHHHHHHHhC-------CCCCHHHHh-h
Confidence 223333333222110 0 01 1 44566678888999999988764 236999988 2
Q ss_pred ccccccccCCCCCchhhhhhhc
Q 041575 241 LLYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 241 ~~~~~~~~~~~~l~~~~i~~~~ 262 (263)
+ + .+++++|.+++
T Consensus 223 ----~----~-~ls~~ei~~~~ 235 (404)
T 2xbk_A 223 ----D----G-ELTEDRVAHLA 235 (404)
T ss_dssp ----S----S-SCCHHHHHHHH
T ss_pred ----c----C-CCCHHHHHHHH
Confidence 2 3 68999988765
No 54
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta binding protein; HET: HEM; 2.47A {Micromonospora echinospora}
Probab=99.86 E-value=4.1e-20 Score=148.08 Aligned_cols=207 Identities=11% Similarity=0.032 Sum_probs=147.3
Q ss_pred CchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchh-hh------hhhhcCccccccCCCCh
Q 041575 12 EPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRM-AM------EILGYNFLATPSSPYGS 84 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~g~ 84 (263)
.+++.++.++ ++||||++ + +.+.++|++|+++++||.+ ..|.+++... .. ...+..+.++++.+ |+
T Consensus 13 ~~p~~~~~~l-~~yGpv~~-~--g~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~ 85 (397)
T 3buj_A 13 RDPYPSYHWL-LRHDPVHR-G--AHRVWYVSRFADVRAVLGD--ERFARTGIRRFWTDLVGPGLLAEIVGDIILFQD-EP 85 (397)
T ss_dssp HCCHHHHHHH-HHHCSEEE-C--GGGCEEECSHHHHHHHHTC--TTEESHHHHHHHHHHHCSSHHHHHHTTCGGGCC-TT
T ss_pred cCchHHHHHH-HhcCCeee-C--CCCeEEEcCHHHHHHHHcC--CCcccCcccccccccccccccccccccccccCC-ch
Confidence 4678888877 58999999 6 5789999999999999964 3565554321 10 11111023566665 99
Q ss_pred hHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhH-HHHHHHHHHHHHHHHccccCCCcc
Q 041575 85 YWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKH-WLEGTTFDIIIRIIEGKRYTSQEG 163 (263)
Q Consensus 85 ~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~-~~~~~~~~vi~~~~fG~~~~~~~~ 163 (263)
.|+++|+++.+ .|++.+++.+.+.+.++++++++.|.+ +.++|+.. ....+++++|+.+ ||.+++ +.
T Consensus 86 ~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~~--------~~~~dl~~~~~~~~~~~vi~~~-~G~~~~--~~ 153 (397)
T 3buj_A 86 DHGRLRGVVGP-AFSPSALRRLEPVIAGTVDDLLRPALA--------RGAMDVVDELAYPLALRAVLGL-LGLPAA--DW 153 (397)
T ss_dssp HHHHHHHHHGG-GSSTTTTGGGHHHHHHHHHHHHHHHHT--------TTEEEHHHHTHHHHHHHHHHHH-HTCCGG--GH
T ss_pred hHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHHhh--------cCCeehHHHHHHHhHHHHHHHH-hCCCHH--HH
Confidence 99999999998 799999999999999999999999962 23799875 4578999999998 998763 22
Q ss_pred hHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHhccc
Q 041575 164 TDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSLLY 243 (263)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~~~~ 243 (263)
+.+......+...+ +. .++ ....++..+....+.+++.+.|+++++. ..+|+++.|+++..
T Consensus 154 ~~~~~~~~~~~~~~---------~~--~~~-~~~~~~~~~~~~~~~~~~~~~i~~r~~~-------~~~dll~~ll~~~~ 214 (397)
T 3buj_A 154 GAVGRWSRDVGRTL---------DR--GAS-AEDMRRGHAAIAEFADYVERALARRRRE-------GGEDLLALMLDAHD 214 (397)
T ss_dssp HHHHHHHHHHHGGG---------CS--SCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc---------CC--CCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCCHHHHHHHhhh
Confidence 34444444333221 11 011 1223456677788999999999988765 23699999998742
Q ss_pred cccccCCCCCchhhhhhhc
Q 041575 244 DNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 244 ~~~~~~~~~l~~~~i~~~~ 262 (263)
+ +. +++++|.+++
T Consensus 215 ~-----~~-ls~~ei~~~~ 227 (397)
T 3buj_A 215 R-----GL-MSRNEIVSTV 227 (397)
T ss_dssp T-----TS-SCHHHHHHHH
T ss_pred c-----CC-CCHHHHHHHH
Confidence 2 23 9999998765
No 55
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2, anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A {Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A* 2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Probab=99.86 E-value=1.1e-20 Score=151.82 Aligned_cols=205 Identities=8% Similarity=0.085 Sum_probs=146.0
Q ss_pred CchhHHHHHHHhhcCCeEEEEe-cCee-EEEecCHHHHHHHHhhCCccccCCcchhhhh----h-hhcCccccccCCCCh
Q 041575 12 EPTHRILGNMANKYGPIFTMKM-GVNR-ALVVSNSEITKECFTTNDKALASRPRRMAME----I-LGYNFLATPSSPYGS 84 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~-~~~~-~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~g~ 84 (263)
.+++.++.+++ +||||+++.+ ++.+ .++|++|+++++|+.+ ..|.+++...... . ....+.++++.+ |+
T Consensus 24 ~~p~~~~~~l~-~~Gpv~~~~~~~g~~p~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~d-g~ 99 (406)
T 1s1f_A 24 SDFDPVLTELM-REGPVTRISLPNGEGWAWLVTRHDDVRLVTND--PRFGREAVMDRQVTRLAPHFIPARGAVGFLD-PP 99 (406)
T ss_dssp TCCCHHHHHHH-HHCSEEEEECSBSBSCEEEECSHHHHHHHHTC--TTEESTTTTTTTBCBSSSSCSSCTTSGGGCC-TT
T ss_pred cCchHHHHHHH-hcCCeeeeccCCCcccEEEEcCHHHHHHHHcC--CCccCCcCCCCCcccccccccccccccccCC-ch
Confidence 67899999996 7999999996 5655 9999999999999964 3576665332111 0 111123666664 99
Q ss_pred hHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHH-HHHHHHHHHHHHHccccCCCcc
Q 041575 85 YWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWL-EGTTFDIIIRIIEGKRYTSQEG 163 (263)
Q Consensus 85 ~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~~ 163 (263)
.|+++|+++++ .|++.+++.+.+.+.++++++++.|.+ .+.++|+...+ ..+++++|+. +||.+++ +.
T Consensus 100 ~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~~-------~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~--~~ 168 (406)
T 1s1f_A 100 DHTRLRRSVAA-AFTARGVERVRERSRGMLDELVDAMLR-------AGPPADLTEAVLSPFPIAVICE-LMGVPAT--DR 168 (406)
T ss_dssp HHHHHHHHHHH-HHSHHHHHHHHHHHHHHHHHHHHHHHH-------HCSSEEHHHHTTTHHHHHHHHH-HHTCCGG--GH
T ss_pred HHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCccHHHHHhhHhHHHHHHH-HhCCCHH--HH
Confidence 99999999998 689999999999999999999999973 12379998766 5799999998 5998763 23
Q ss_pred hHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHhccc
Q 041575 164 TDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSLLY 243 (263)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~~~~ 243 (263)
+.+......+.... .| + . +..+....+.+++.+.|+++++. ..+|+++.|+++..
T Consensus 169 ~~~~~~~~~~~~~~--------~~-----~--~---~~~~~~~~~~~~~~~~i~~r~~~-------~~~d~l~~ll~~~~ 223 (406)
T 1s1f_A 169 HSMHTWTQLILSSS--------HG-----A--E---VSERAKNEMNAYFSDLIGLRSDS-------AGEDVTSLLGAAVG 223 (406)
T ss_dssp HHHHHHHHHHHHHH--------TT-----C--C---CCHHHHTHHHHHHHHHHHTSCCS-------CCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--------CC-----H--H---HHHHHHHHHHHHHHHHHHHHHhC-------CCCCHHHHHHHhhc
Confidence 34444444333211 01 1 1 22345566777888888776532 23699999998643
Q ss_pred cccccCCCCCchhhhhhhc
Q 041575 244 DNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 244 ~~~~~~~~~l~~~~i~~~~ 262 (263)
+ ..+++++|.+++
T Consensus 224 ~------~~ls~~el~~~~ 236 (406)
T 1s1f_A 224 R------DEITLSEAVGLA 236 (406)
T ss_dssp T------TSSCHHHHHHHH
T ss_pred c------cCCCHHHHHHHH
Confidence 2 368999988765
No 56
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron, metal-binding, oxidoreductase, substrate-soaking, cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB: 1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A* 2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A* 1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Probab=99.86 E-value=2.6e-20 Score=149.85 Aligned_cols=201 Identities=10% Similarity=0.054 Sum_probs=148.1
Q ss_pred CchhHHHHHHHhhcC--CeEEEE-ecCeeEEEecCHHHHHHHHhhCCccccCCc-chhhhhhhhcCccc-cccCCCChhH
Q 041575 12 EPTHRILGNMANKYG--PIFTMK-MGVNRALVVSNSEITKECFTTNDKALASRP-RRMAMEILGYNFLA-TPSSPYGSYW 86 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG--~i~~~~-~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~g~~w 86 (263)
.+++..+.+|+ +|| ||+++. +| +.+++++|+++++|+. +...|++++ ....... ..+ .+ +++. +|+.|
T Consensus 37 ~~p~~~~~~l~-~~G~~pv~~~~~~g--~~vvv~~~~~v~~vl~-~~~~f~~~~~~~~~~~~-~~~-~~~l~~~-~g~~~ 109 (415)
T 2zwu_A 37 AGVQEAWAVLQ-ESNVPDLVWTRCNG--GHWIATRGQLIREAYE-DYRHFSSECPFIPREAG-EAY-DFIPTSM-DPPEQ 109 (415)
T ss_dssp GCHHHHHHGGG-STTSCSEEEECGGG--CEEEECSHHHHHHHHH-CTTTEETTSCSSSHHHH-HHC-CCTTTTC-CTTTT
T ss_pred cChHHHHHHHH-hcCCCCeEEecCCC--CeEEEcCHHHHHHHHc-CccccCCCcccCCCCcc-ccc-cccCccC-CCcHH
Confidence 57899999996 799 999998 55 6999999999999995 445677776 2221111 112 24 6666 49999
Q ss_pred HHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHH-HHHHHHHHHHHHHccccCCCcchH
Q 041575 87 RETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWL-EGTTFDIIIRIIEGKRYTSQEGTD 165 (263)
Q Consensus 87 ~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~~~~ 165 (263)
+++|+++.+ .|++.+++.+.+.+.++++++++.|.+ . .++|+...+ ..+++++|+.+ ||.+++ +.++
T Consensus 110 ~~~R~~~~~-~f~~~~l~~~~~~i~~~~~~l~~~l~~------~--~~~d~~~~~~~~~~~~vi~~~-~G~~~~--~~~~ 177 (415)
T 2zwu_A 110 RQFRALANQ-VVGMPVVDKLENRIQELACSLIESLRP------Q--GQCNFTEDYAEPFPIRIFMLL-AGLPEE--DIPH 177 (415)
T ss_dssp HHHHHHHHH-HHSHHHHHHHHHHHHHHHHHHHHHHGG------G--TEEEHHHHTTTHHHHHHHHHH-HTCCGG--GHHH
T ss_pred HHHHHHHHh-hhCHHHHHHHHHHHHHHHHHHHHHHHh------c--CCccHHHHHHHHHHHHHHHHH-cCCCHH--HHHH
Confidence 999999998 789999999999999999999999962 1 279999765 78999999999 998873 2234
Q ss_pred HHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHhccccc
Q 041575 166 LHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSLLYDN 245 (263)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~~~~~~ 245 (263)
+......+... .. | . +..+....+.+++.+.|+++++. +.+|+++.|+++..+
T Consensus 178 ~~~~~~~~~~~--------~~------P--~---~~~~~~~~~~~~~~~~i~~r~~~-------~~~dll~~ll~~~~~- 230 (415)
T 2zwu_A 178 LKYLTDQMTRP--------DG------S--M---TFAEAKEALYDYLIPIIEQRRQK-------PGTDAISIVANGQVN- 230 (415)
T ss_dssp HHHHHHHHHSC--------CS------S--S---CHHHHHHHHHHHHHHHHHHHHHS-------CCSSHHHHHHTCEET-
T ss_pred HHHHHHHHHhc--------cC------H--H---HHHHHHHHHHHHHHHHHHHHHhC-------CCCCHHHHHHHhhhc-
Confidence 44443333221 01 2 1 34456677888999999988763 236999999987432
Q ss_pred cccCCCCCchhhhhhhc
Q 041575 246 AKQLPDSDADTVIKALC 262 (263)
Q Consensus 246 ~~~~~~~l~~~~i~~~~ 262 (263)
+..+++++|.+++
T Consensus 231 ----~~~l~~~~i~~~~ 243 (415)
T 2zwu_A 231 ----GRPITSDEAKRMC 243 (415)
T ss_dssp ----TEECCHHHHHHHH
T ss_pred ----CCCCCHHHHHHHH
Confidence 3469999988765
No 57
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein, oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB: 3nc5_A* 3nc6_A* 3nc7_A*
Probab=99.86 E-value=3.4e-21 Score=156.25 Aligned_cols=210 Identities=10% Similarity=0.092 Sum_probs=138.3
Q ss_pred CchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchhhhhhhhcCccccccCCCChhHHHHHh
Q 041575 12 EPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRMAMEILGYNFLATPSSPYGSYWRETRK 91 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~Rk 91 (263)
.+++.++.++ ++||||+++..++ .++|++|+++++|+.++. .|++++......... +..++++. +|+.|+++|+
T Consensus 53 ~~p~~~~~~l-r~~gpv~~~~~~~--~~vv~~~~~v~~vl~~~~-~f~~~~~~~~~~~~~-~~~~l~~~-dg~~h~~~Rr 126 (441)
T 3nc3_A 53 NNPYAYFSQL-REEDPVHYEESID--SYFISRYHDVRYILQHPD-IFTTKSLVERAEPVM-RGPVLAQM-HGKEHSAKRR 126 (441)
T ss_dssp HCGGGTHHHH-HHHCSEEEETTTT--EEEECCHHHHHHHHHCTT-TEECCCTTSCCCCSC-C--------------CCHH
T ss_pred cChHHHHHHH-HhcCCEEEeCCCC--EEEEcCHHHHHHHhcCcc-ccccccccccccccc-CCCccccC-CcHHHHHHHH
Confidence 4677788877 5899999987655 899999999999996653 476665432211111 11135555 5999999999
Q ss_pred HHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhH-HHHHHHHHHHHHHHHccccCCCcchHHHHHH
Q 041575 92 IATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKH-WLEGTTFDIIIRIIEGKRYTSQEGTDLHEHA 170 (263)
Q Consensus 92 ~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~-~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~ 170 (263)
++.+ .|++..++.+.+.+.+.++++++.|. . +.++|+.. ....+++++|+. +||.+. .+.+.+....
T Consensus 127 ~~~~-~fs~~~l~~~~~~i~~~~~~ll~~l~------~--~~~~dl~~~~~~~~~~~vi~~-l~G~~~--~~~~~~~~~~ 194 (441)
T 3nc3_A 127 IVVR-SFIGDALDHLSPLIKQNAENLLAPYL------E--RGKSDLVNDFGKTFAVCVTMD-MLGLDK--RDHEKISEWH 194 (441)
T ss_dssp HHHH-HHHHTHHHHHHHHHHHHHHHHHTTTT------T--TTEEECCCCCHHHHHHHHHHH-HTTCCG--GGHHHHHHHH
T ss_pred HHHh-hcCHHHHHHHHHHHHHHHHHHHHHHH------h--cCCCcHHHHHHHHHHHHHHHH-HcCCCH--HHHHHHHHHH
Confidence 9998 78999999999999999999999885 1 23689754 455699999999 589876 2334555555
Q ss_pred HHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHhccccccccCC
Q 041575 171 ASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSLLYDNAKQLP 250 (263)
Q Consensus 171 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~ 250 (263)
..+........ .+ ....+...+..+.+.+++.+.|+++++. +.+|+++.|+++..+ +
T Consensus 195 ~~~~~~~~~~~----------~~-~~~~~~~~~~~~~l~~~~~~~i~~rr~~-------~~~Dll~~Ll~~~~~-----~ 251 (441)
T 3nc3_A 195 SGVADFITSIS----------QS-PEARAHSLWCSEQLSQYLMPVIKERRVN-------PGSDLISILCTSEYE-----G 251 (441)
T ss_dssp HHHHHHHHCSC----------CC-HHHHHHHHHHHHHHHHHHHHHHHHHTTS-------CCSSHHHHHCC----------
T ss_pred HHHHHhccccc----------CC-hHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCHHHHHHHhhcc-----C
Confidence 55554432211 01 0113455667788899999999888642 347999999987543 3
Q ss_pred CCCchhhhhhhc
Q 041575 251 DSDADTVIKALC 262 (263)
Q Consensus 251 ~~l~~~~i~~~~ 262 (263)
..++++||.+++
T Consensus 252 ~~ls~~el~~~~ 263 (441)
T 3nc3_A 252 MALSDKDILALI 263 (441)
T ss_dssp -CCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 579999998875
No 58
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans} SCOP: a.104.1.0 PDB: 3lxi_A*
Probab=99.85 E-value=1.9e-20 Score=151.15 Aligned_cols=211 Identities=12% Similarity=0.069 Sum_probs=151.0
Q ss_pred CchhHHHHHHHhhcC-CeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchhhhhhhhcCccccccCCCChhHHHHH
Q 041575 12 EPTHRILGNMANKYG-PIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRMAMEILGYNFLATPSSPYGSYWRETR 90 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG-~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R 90 (263)
.+++.++.++++++| ||+++..++ +.++|++|+++++|+ ++...|++++...........+.++++. +|+.|+++|
T Consensus 38 ~dp~~~~~~lr~~~G~pv~~~~~~~-~~~vv~~~~~v~~vl-~~~~~f~~~~~~~~~~~~~~~~~~~~~~-dg~~h~~~R 114 (421)
T 3lxh_A 38 QGFHEAWKRVQQPDTPPLVWTPFTG-GHWIATRGTLIDEIY-RSPERFSSRVIWVPREAGEAYDMVPTKL-DPPEHTPYR 114 (421)
T ss_dssp GCHHHHHHHHCCTTCCSEEEESSTT-SEEEECSHHHHHHHH-TCTTTEETTCCSSSHHHHHHCCCTTTTC-CTTTHHHHH
T ss_pred cChhHHHHHHHhcCCCCeEeccCCC-CeEEEcCHHHHHHHH-cChhhccCCcccCCcccccccccCCccC-CcHHHHHHH
Confidence 478999999998766 899998766 589999999999999 4556777776432222122122244555 599999999
Q ss_pred hHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHH-HHHHHHHHHHHHHccccCCCcchHHHHH
Q 041575 91 KIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWL-EGTTFDIIIRIIEGKRYTSQEGTDLHEH 169 (263)
Q Consensus 91 k~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~ 169 (263)
+++++ .|++.+++.+.+.+.+.++++++.|.+ +..+|+...+ ..++.++++. +||.+.+ +.+.+...
T Consensus 115 ~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~~--------~~~~d~~~~~~~~~~~~v~~~-~~G~~~~--~~~~~~~~ 182 (421)
T 3lxh_A 115 KAIDK-GLNLAEIRKLEDQIRTIAVEIIEGFAD--------RGHCEFGSEFSTVFPVRVFLA-LAGLPVE--DATKLGLL 182 (421)
T ss_dssp HHHHH-HHSHHHHHTTHHHHHHHHHHHHHTTTT--------TSEEEHHHHTTTTHHHHHHHH-HHTCCGG--GHHHHHHH
T ss_pred HHHhh-hcCHHHHHHHHHHHHHHHHHHHHHHhh--------cCCeehHHHHHHHHHHHHHHH-HcCCCHH--HHHHHHHH
Confidence 99998 789999999999999999999999851 2268976555 6688888887 4897652 23344444
Q ss_pred HHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHhccccccccC
Q 041575 170 AASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSLLYDNAKQL 249 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~ 249 (263)
...+... ..++|. ...++..+..+.+.+++.+.|+++++. ..+|+++.|+++..+
T Consensus 183 ~~~~~~~------------~~~~p~-~~~~~~~~~~~~~~~~~~~~i~~r~~~-------~~~dll~~ll~~~~~----- 237 (421)
T 3lxh_A 183 ANEMTRP------------SGNTPE-EQGRSLEAANKGFFEYVAPIIAARRGG-------SGTDLITRILNVEID----- 237 (421)
T ss_dssp HHHHHSC------------CCSSHH-HHHHHHHHHHHHHHHHHHHHHHHHTTC-------CCCSHHHHHHTSCBT-----
T ss_pred HHHHhcc------------ccCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCHHHHHHhhhcc-----
Confidence 4333221 112331 124566777888999999999888754 337999999987543
Q ss_pred CCCCchhhhhhhc
Q 041575 250 PDSDADTVIKALC 262 (263)
Q Consensus 250 ~~~l~~~~i~~~~ 262 (263)
+..++++|+.+++
T Consensus 238 ~~~l~~~ei~~~~ 250 (421)
T 3lxh_A 238 GKPMPDDRALGLV 250 (421)
T ss_dssp TBCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 3579999998765
No 59
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase, metal-binding, AN biosynthesis, TIE-ROD mechanism of action; HET: HEM; 1.59A {Saccharopolyspora erythraea} PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Probab=99.84 E-value=9.3e-20 Score=146.66 Aligned_cols=207 Identities=11% Similarity=0.070 Sum_probs=147.7
Q ss_pred CchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchhhhhhhhcCccccccCCCChhHHHHHh
Q 041575 12 EPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRMAMEILGYNFLATPSSPYGSYWRETRK 91 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~Rk 91 (263)
.+++..+.++++ |||| +.++.+.+++++|+++++++.+. ..|++++...+.. ......++++. +|+.|+++|+
T Consensus 28 ~~p~~~~~~l~~-~gpv---~~~~~~~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~-~~~~~~~~~~~-~g~~~~~~R~ 100 (411)
T 2jjn_A 28 TALLDWLGTMRE-KQPV---WQDRYGVWHVFRHADVQTVLRDT-ATFSSDPTRVIEG-ASPTPGMIHEI-DPPEHRALRK 100 (411)
T ss_dssp HHHHHHHHHHHH-HCSE---EECTTSCEEECSHHHHHHHHHCT-TTEESCGGGGSTT-CCCCTTCGGGC-CTTHHHHHHH
T ss_pred cChHHHHHHHHH-hCCc---ccCCCCeEEECCHHHHHHHHcCc-ccccCcccccCCc-ccccccccccC-CchHHHHHHH
Confidence 467889999986 9998 56667899999999999999654 4677776432211 11122356666 4999999999
Q ss_pred HHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHH-HHHHHHHHHHHHHHccccCCCcchHHHHHH
Q 041575 92 IATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHW-LEGTTFDIIIRIIEGKRYTSQEGTDLHEHA 170 (263)
Q Consensus 92 ~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~-~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~ 170 (263)
++++ .|++.+++.+.+.+.+.++++++. . + .++|+... ...+++++|+.+ ||.+.+. .+++....
T Consensus 101 ~~~~-~fs~~~l~~~~~~i~~~~~~ll~~-~--------~-~~~d~~~~~~~~~~~~vi~~~-fG~~~~~--~~~~~~~~ 166 (411)
T 2jjn_A 101 VVSS-AFTPRTISDLEPRIRDVTRSLLAD-A--------G-ESFDLVDVLAFPLPVTIVAEL-LGLPPMD--HEQFGDWS 166 (411)
T ss_dssp HHHH-HSCHHHHHTTHHHHHHHHHHHHHT-S--------C-SEEEHHHHTTTHHHHHHHHHH-HTCCSCC--CSTTCCHH
T ss_pred Hhhh-hcCHHHHHHHHHHHHHHHHHHHhc-C--------C-CceeHHHHHHHHHHHHHHHHH-cCCCHHH--HHHHHHHH
Confidence 9998 799999999999999999998887 2 1 27999854 568999999998 9998754 22333333
Q ss_pred HHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHhccccccccCC
Q 041575 171 ASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSLLYDNAKQLP 250 (263)
Q Consensus 171 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~ 250 (263)
..+.... .|. +++ +...++..+....+.+++.+.|+++++. +.+|+++.|+++..+ +
T Consensus 167 ~~~~~~~--------~~~--~~~-p~~~~~~~~~~~~~~~~~~~~i~~r~~~-------~~~d~l~~ll~~~~~-----~ 223 (411)
T 2jjn_A 167 GALVDIQ--------MDD--PTD-PALAERIADVLNPLTAYLKARCAERRAD-------PGDDLISRLVLAEVD-----G 223 (411)
T ss_dssp HHHHHSC--------CSC--TTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHS-------CCSSHHHHHHHCCBT-----T
T ss_pred HHHHhcc--------Ccc--ccc-hHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCHHHHHHhcccC-----C
Confidence 3333221 121 111 1223456677788899999999988762 237999999987542 3
Q ss_pred CCCchhhhhhhc
Q 041575 251 DSDADTVIKALC 262 (263)
Q Consensus 251 ~~l~~~~i~~~~ 262 (263)
..++++++.+++
T Consensus 224 ~~l~~~el~~~~ 235 (411)
T 2jjn_A 224 RALDDEEAANFS 235 (411)
T ss_dssp BCCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 469999998765
No 60
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A*
Probab=99.84 E-value=1.3e-20 Score=155.22 Aligned_cols=234 Identities=15% Similarity=0.121 Sum_probs=144.9
Q ss_pred CcccccccCCCCchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcch--hhhhhhhcCccccc
Q 041575 1 MIGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRR--MAMEILGYNFLATP 78 (263)
Q Consensus 1 llG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 78 (263)
++||++++. .+++..+.+|+++|||||++++|+.++|+|+||+++++|+.++.. +..++.. .....++. +++
T Consensus 24 ~iG~~~~~~--~~~~~~~~~~~~kyG~i~~~~~g~~~~vvv~dp~~~~~il~~~~~-~~~~~~~~~~~~~~~g~---~~~ 97 (491)
T 3dax_A 24 YLGCALQFG--ANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKY-FDWKKFHFATSAKAFGH---RSI 97 (491)
T ss_dssp CTTTTGGGT--CCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGTHHHHSCCTT-EESSHHHHHHHHHHHTC---CCC
T ss_pred chhhHHHHh--hCHHHHHHHHHHhcCCeEEEEECCeEEEEEcChHHHHHHHcCCcc-CChHHHHHHHHHHHcCC---Ccc
Confidence 589999887 678999999999999999999999999999999999999965432 2222221 12222332 334
Q ss_pred -cCCCChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHHHHHHHHHHHccc
Q 041575 79 -SSPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKR 157 (263)
Q Consensus 79 -~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~ 157 (263)
.. +|+.|+++|+.+.+ .|+..++..+.+.+.+.+..+++....... .......+++...+..+++++++.++||.+
T Consensus 98 ~~~-~g~~w~~~r~~~~~-~f~~~~l~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~l~~~~~~~i~~~~~~~~fG~~ 174 (491)
T 3dax_A 98 DPM-DGNTTENINDTFIK-TLQGHALNSLTESMMENLQRIMRPPVSSNS-KTAAWVTEGMYSFCYRVMFEAGYLTIFGRD 174 (491)
T ss_dssp CGG-GTSBCCCHHHHHHH-HHSHHHHHHHHHHHHHHHHHHHC-----------CCEEEEHHHHHHHHHHHHHHHHHHCBC
T ss_pred ccc-chhHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHHHHHhhccCCc-CCCCceeccHHHHHHHHHHHHhHHHHcCcc
Confidence 44 48899999999997 689988888888887777777665431000 011234688999999999999999999988
Q ss_pred cCCCcchHHHHHHHHHHHhhhccccccccccc-ccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHH
Q 041575 158 YTSQEGTDLHEHAASFFTLFGKFVVSDALPFL-RWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIY 236 (263)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~ 236 (263)
+..++ +....+..+...+.. +..++|++ .++|. ...+...+..+.+.+.+ ++++.++ . ....|+++
T Consensus 175 ~~~~~--~~~~~~~~~~~~~~~--~~~~~p~l~~~lp~-~~~~~~~~~~~~~~~~~---~~~~~~~---~--~~~~d~l~ 241 (491)
T 3dax_A 175 LTRRD--TQKAHILNNLDNFKQ--FDKVFPALVAGLPI-HMFRTAHNAREKLAESL---RHENLQK---R--ESISELIS 241 (491)
T ss_dssp STTGG--GHHHHHHHHHHHHHH--HHHHHHHHHTTCCG-GGSHHHHHHHHHHHHHT---SHHHHTT---C--BSCCHHHH
T ss_pred ccccc--chhhhhhHHHHHHHH--HHHHhHHHHHhCCH-hhhhHHHHHHHHHHHHH---HHHHhhc---c--cchhHHHH
Confidence 75422 112222222222111 22345643 33542 22233333333333222 2222221 1 13469999
Q ss_pred HHHhccccccccCCCCCchhhhhhh
Q 041575 237 VMLSLLYDNAKQLPDSDADTVIKAL 261 (263)
Q Consensus 237 ~ll~~~~~~~~~~~~~l~~~~i~~~ 261 (263)
.+++...+. ..++++++.++
T Consensus 242 ~ll~~~~~~-----~~~~~~~i~~~ 261 (491)
T 3dax_A 242 LRMFLNDTL-----STFDDLEKAKT 261 (491)
T ss_dssp HHHHHHHHH-----BCCCHHHHHHH
T ss_pred HHHHHHHhc-----CCChHHHHHHH
Confidence 998765443 24788887644
No 61
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A {Novosphingobium aromaticivorans} PDB: 3ofu_A*
Probab=99.84 E-value=6.2e-20 Score=147.07 Aligned_cols=204 Identities=9% Similarity=0.066 Sum_probs=146.3
Q ss_pred CchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchhhhhhhhcCccccccCCCChhHHHHHh
Q 041575 12 EPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRMAMEILGYNFLATPSSPYGSYWRETRK 91 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~Rk 91 (263)
.+++.++.+|+++ |||+++..++ +.++|++|+++++|+.+ ...|++++.............+++.. +|+.|+++|+
T Consensus 24 ~~p~~~~~~l~~~-Gpv~~~~~~~-~~~vv~~~~~v~~vl~~-~~~f~~~~~~~~~~~~~~~~~~~~~~-~g~~h~~~R~ 99 (396)
T 3oft_A 24 QDYFAAWKTLLDG-PGLVWSTANG-GHWIAARGDVVRELWGD-AERLSSQCLAVTPGLGKVMQFIPLQQ-DGAEHKAFRT 99 (396)
T ss_dssp TCHHHHHHGGGGS-CSEEEECSTT-SEEEECSHHHHHHHHHC-TTTEESTTCCSSTTHHHHHCCTTTTC-CHHHHHHHHH
T ss_pred cChHHHHHHHHhc-CCeeeecCCC-CEEEEcCHHHHHHHHcC-cccccCCcccCCCccccccccCcccc-CCcHHHHHHH
Confidence 6899999999999 9999998874 58999999999999954 45777776322111111111234444 5999999999
Q ss_pred HHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHH-HHHHHHHHHHHHHccccCCCcchHHHHHH
Q 041575 92 IATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWL-EGTTFDIIIRIIEGKRYTSQEGTDLHEHA 170 (263)
Q Consensus 92 ~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~~ 170 (263)
++++ .|++.+++.+.+.+.+.++++++.|.+ . ..+|+...+ ..++.++++. +||.+. .+.+.+....
T Consensus 100 ~~~~-~f~~~~l~~~~~~i~~~~~~l~~~l~~------~--~~~d~~~~~~~~~~~~v~~~-~~G~~~--~~~~~~~~~~ 167 (396)
T 3oft_A 100 PVMK-GLASRFVVALEPKVQAVARKLMESLRP------R--GSCDFVSDFAEILPLNIFLT-LIDVPL--EDRPRLRQLG 167 (396)
T ss_dssp HHHH-HTCHHHHHHHHHHHHHHHHHHHHHHGG------G--SEEEHHHHTTTTHHHHHHHH-HTTCCG--GGHHHHHHHH
T ss_pred Hhhh-hhCHHHHHHHHHHHHHHHHHHHHHhhh------c--CCccHHHHHHHHHHHHHHHH-HcCCCH--HHHHHHHHHH
Confidence 9997 799999999999999999999999962 1 268886655 5677788776 588754 2223333333
Q ss_pred HHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHhccccccccCC
Q 041575 171 ASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSLLYDNAKQLP 250 (263)
Q Consensus 171 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~ 250 (263)
..+... . . .+...+..+.+.+++.+.|+++++. ..+|+++.|+++..+ +
T Consensus 168 ~~~~~~---------------~---~-~~~~~~~~~~~~~~~~~~i~~r~~~-------~~~d~l~~ll~~~~~-----~ 216 (396)
T 3oft_A 168 VQLTRP---------------D---G-SMTVEQLKQAADDYLWPFIEKRMAQ-------PGDDLFSRILSEPVG-----G 216 (396)
T ss_dssp HHHHSC---------------C---S-SCCHHHHHHHHHHHHHHHHHHHHHS-------CCSSHHHHHHTSCBT-----T
T ss_pred HHHhCC---------------C---C-HHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCHHHHHHHhhcc-----C
Confidence 322110 0 0 1234566678889999999988875 337999999987543 3
Q ss_pred CCCchhhhhhhc
Q 041575 251 DSDADTVIKALC 262 (263)
Q Consensus 251 ~~l~~~~i~~~~ 262 (263)
..++++++.+++
T Consensus 217 ~~l~~~el~~~~ 228 (396)
T 3oft_A 217 RPWTVDEARRMC 228 (396)
T ss_dssp BCCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 579999998765
No 62
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein, vancomycin biosynthes carrier protein, oxidoreductase; HET: HEM; 2.10A {Amycolatopsis balhimycina}
Probab=99.84 E-value=3.1e-20 Score=149.38 Aligned_cols=205 Identities=13% Similarity=0.054 Sum_probs=145.2
Q ss_pred CchhHHHHHHHhhcCCeEEEEecC--eeEEEecCHHHHHHHHhhCCccccCCcchhhhhhhhc---C-ccccccCCCChh
Q 041575 12 EPTHRILGNMANKYGPIFTMKMGV--NRALVVSNSEITKECFTTNDKALASRPRRMAMEILGY---N-FLATPSSPYGSY 85 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~~~--~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~g~~ 85 (263)
.+++..+.++++ ||||+++...+ .+.++|++++++++|+. +...|++++.......... . +.+++.. +|+.
T Consensus 37 ~dp~~~~~~lr~-~gpV~~~~~~g~~~~~~vv~~~~~v~~vl~-~~~~fs~~~~~~~~~~~~~~~~~~~~~l~~~-dg~~ 113 (415)
T 3mgx_A 37 LERHARWRELAA-EDAMVWSDPGSSPSGFWSVFSHRACAAVLA-PSAPLTSEYGMMIGFDRDHPDNSGGRMMVVS-EHEQ 113 (415)
T ss_dssp TTHHHHHHHHHH-HTCCEEECSSSSSSCEEEECSHHHHHHHSC-TTSSEECTTCSSTTCCSSSCCTTTTTSGGGC-CHHH
T ss_pred CChhHHHHHHHh-cCCEeeccCCCCcCCEEEEecHHHHHHHHh-ChhhhcCCccccccccccccccccCCCcccc-CcHH
Confidence 478999999987 99999996334 78999999999999994 4456777654322111110 1 2245555 5999
Q ss_pred HHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHH-HHHHHHHHHHHHHccccCCCcch
Q 041575 86 WRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWL-EGTTFDIIIRIIEGKRYTSQEGT 164 (263)
Q Consensus 86 w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~~~ 164 (263)
|+++|+++.+ .|++.+++.+.+.+.+.++++++.|. . . .++|+...+ ..+++++|+. +||.+. ++.+
T Consensus 114 h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~ll~~l~------~-~-~~~dl~~~~~~~~~~~vi~~-l~G~~~--~~~~ 181 (415)
T 3mgx_A 114 HRKLRKLVGP-LLSRAAARKLAERVRIEVGDVLGRVL------D-G-EVCDAATAIGPRIPAAVVCE-ILGVPA--EDED 181 (415)
T ss_dssp HHHHHHHHGG-GSSHHHHHHSHHHHHHHHHHHTTTSS------S-S-SCEESTTTTTTHHHHHHHHH-HHTCCG--GGHH
T ss_pred HHHHHHHhHh-hhCHHHHHHHHHHHHHHHHHHHHHHH------h-c-CCcchHHHHHHHHHHHHHHH-HcCCCH--HHHH
Confidence 9999999998 79999999999999999999999885 2 2 269999888 6799999998 589654 2223
Q ss_pred HHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHhcccc
Q 041575 165 DLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSLLYD 244 (263)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~~~~~ 244 (263)
.+......+.... .|. +.|. . ..++...+.+++.+.|+++++. +.+|+++.|+++.
T Consensus 182 ~~~~~~~~~~~~~--------~~~--~~~~-~----~~~~~~~l~~~~~~~i~~rr~~-------~~~dll~~ll~~~-- 237 (415)
T 3mgx_A 182 MLIDLTNHAFGGE--------DEL--FDGM-T----PRQAHTEILVYFDELITARRKE-------PGDDLVSTLVTDD-- 237 (415)
T ss_dssp HHHHHHHHHTSCC--------C------CC-C----HHHHHHHHHHHHHHHHHHHHHS-------CCSSHHHHHHHCT--
T ss_pred HHHHHHHHHHccc--------Ccc--cchH-H----HHHHHHHHHHHHHHHHHHHHhC-------CCCCHHHHHHhCC--
Confidence 4444433332211 111 1111 1 1255678889999999988764 2379999999763
Q ss_pred ccccCCCCCchhhhhhhc
Q 041575 245 NAKQLPDSDADTVIKALC 262 (263)
Q Consensus 245 ~~~~~~~~l~~~~i~~~~ 262 (263)
.++++||.+++
T Consensus 238 -------~ls~~el~~~~ 248 (415)
T 3mgx_A 238 -------DLTIDDVLLNC 248 (415)
T ss_dssp -------TSCHHHHHHHH
T ss_pred -------CCCHHHHHHHH
Confidence 48899988765
No 63
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450 vancomycin, oxidoreductase; HET: HEM; 1.70A {Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A* 1lgf_A*
Probab=99.84 E-value=7.9e-20 Score=146.46 Aligned_cols=204 Identities=8% Similarity=0.122 Sum_probs=142.7
Q ss_pred CchhHHHHHHHhhcCCeEEEEec-Ce---eEEEecCHHHHHHHHhhCCccccCCcc------h---hhhhhhhcCccccc
Q 041575 12 EPTHRILGNMANKYGPIFTMKMG-VN---RALVVSNSEITKECFTTNDKALASRPR------R---MAMEILGYNFLATP 78 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~~-~~---~~v~i~~p~~~~~i~~~~~~~~~~~~~------~---~~~~~~~~~~~~~~ 78 (263)
..++..+.+|+++ |||+++.++ +. ++++|++|+++++|++++ ..|++++. . ....... .+.+++
T Consensus 13 ~~~~~~~~~l~~~-Gpv~~~~~~~g~~~~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 89 (398)
T 1lfk_A 13 RQGLDPADELLAA-GALTRVTIGSGADAETHWMATAHAVVRQVMGDH-QQFSTRRRWDPRDEIGGKGIFRPRE-LVGNLM 89 (398)
T ss_dssp EETTEECHHHHTS-CSEEEEC------CCCEEEECSHHHHHHHHHCT-TTEEECTTCCC-------------C-CTTCGG
T ss_pred cCCCChhHHHHhc-CCccccccCCCCcccceEEEecHHHHHHHHhhC-cccccccccccccccCCcccccccc-cccCcc
Confidence 3455666778877 999999875 45 899999999999999433 34666553 1 1011111 123566
Q ss_pred cCCCChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHH-HHHHHHHHHHHccc
Q 041575 79 SSPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEG-TTFDIIIRIIEGKR 157 (263)
Q Consensus 79 ~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~-~~~~vi~~~~fG~~ 157 (263)
+.+ |+.|+++|+++++ .|++.+++.+.+.+.+.++++++.|.+ .+.++|+.+.+.. ++.++|+. +||.+
T Consensus 90 ~~~-g~~~~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~l~~~l~~-------~~~~~d~~~~~~~~~~~~vi~~-~~G~~ 159 (398)
T 1lfk_A 90 DYD-PPEHTRLRRKLTP-GFTLRKMQRMAPYIEQIVNDRLDEMER-------AGSPADLIAFVADKVPGAVLCE-LVGVP 159 (398)
T ss_dssp GCC-TTHHHHHHHHHGG-GGCHHHHHHHHHHHHHHHHHHHHHHHH-------HCSSEEHHHHTTTTHHHHHHHH-HHTCC
T ss_pred ccC-CHHHHHHHHHHHh-hhCHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCccHHHHHHHHHHHHHHHH-HcCCC
Confidence 664 9999999999998 689999999999999999999999963 2347999999987 99999998 59987
Q ss_pred cCCCcchHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHH
Q 041575 158 YTSQEGTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYV 237 (263)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ 237 (263)
++ +.+.+......+. . .+ ...++..++...+.+++.+.|+++++. ..+|+++.
T Consensus 160 ~~--~~~~~~~~~~~~~------------~----~~--~~~~~~~~~~~~~~~~~~~~i~~r~~~-------~~~dll~~ 212 (398)
T 1lfk_A 160 RD--DRDMFMKLCHGHL------------D----AS--LSQKRRAALGDKFSRYLLAMIARERKE-------PGEGMIGA 212 (398)
T ss_dssp GG--GHHHHHHHHHHTT------------C----TT--SCHHHHHHHHHHHHHHHHHHHHHHHHS-------CCSSHHHH
T ss_pred HH--HHHHHHHHHHHHH------------h----cc--cchHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCHHHH
Confidence 63 2223333222211 0 01 123556677788899999999988764 23699999
Q ss_pred HHhccccccccCCCCCchhhhhhhc
Q 041575 238 MLSLLYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 238 ll~~~~~~~~~~~~~l~~~~i~~~~ 262 (263)
|+++. + ..+++++|.+++
T Consensus 213 ll~~~-~------~~l~~~el~~~~ 230 (398)
T 1lfk_A 213 VVAEY-G------DDATDEELRGFC 230 (398)
T ss_dssp HHHHH-G------GGSCHHHHHHHH
T ss_pred HHHhc-C------CCCCHHHHHHHH
Confidence 99865 2 258999988765
No 64
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase, oxidoreductase; HET: HEM; 2.00A {Sphingopyxis macrogoltabida}
Probab=99.84 E-value=3.6e-19 Score=143.76 Aligned_cols=211 Identities=11% Similarity=0.030 Sum_probs=146.1
Q ss_pred CchhHHHHHHHhhcCCeEEEEe-cCeeEEEecCHHHHHHHHhhCCccccCCcc---hhhhh-----h-hhcCccccccCC
Q 041575 12 EPTHRILGNMANKYGPIFTMKM-GVNRALVVSNSEITKECFTTNDKALASRPR---RMAME-----I-LGYNFLATPSSP 81 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~---~~~~~-----~-~~~~~~~~~~~~ 81 (263)
.+++..+.+++++ |||+++.. ++.+.++|++++++++++.+ ...|++++. ..... . ......+++..
T Consensus 38 ~~p~~~~~~lr~~-gpv~~~~~~~~~~~~vvt~~~~v~~vl~d-~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 114 (426)
T 3rwl_A 38 DSVGEYFKRLRKD-DPVHYCADSAFGPYWSITKYNDIMHVDTN-HDIFSSDAGYGGIIIDDGIQKGGDGGLDLPNFIAM- 114 (426)
T ss_dssp TCHHHHHHHHHHH-CSEEEESCCTTCSEEEECSHHHHHHHHHC-TTTEECCGGGTCSSSSCCC-------CCCCCGGGC-
T ss_pred CCccHHHHHHHhc-CCeeeccCCCCCCEEEEcCHHHHHHHHcC-CcccccccccCCCCcccccccccccccccCccccc-
Confidence 4688999999886 99999987 45679999999999999954 355655542 11111 0 11122245555
Q ss_pred CChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHH-HHHHHHHHHHHHHccccCC
Q 041575 82 YGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWL-EGTTFDIIIRIIEGKRYTS 160 (263)
Q Consensus 82 ~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~ 160 (263)
+|+.|+++|+++++ .|++.+++.+.+.+.+.+.++++.|. .+.++|+...+ ..+++++++. +||.+..
T Consensus 115 dg~~h~~~R~~~~~-~fs~~~l~~~~~~i~~~~~~ll~~l~--------~~~~~dl~~~~~~~~~~~vi~~-l~G~~~~- 183 (426)
T 3rwl_A 115 DRPRHDEQRKAVSP-IVAPANLAALEGTIRERVSKTLDGLP--------VGEEFDWVDRVSIEITTQMLAT-LFDFPFE- 183 (426)
T ss_dssp CTTHHHHHHHHHGG-GGCHHHHHHHHHHHHHHHHHHHHTSC--------SSSCEEHHHHTHHHHHHHHHHH-HHTCCGG-
T ss_pred CchHHHHHHHHhhh-hhCHHHHHHHHHHHHHHHHHHHHHhh--------cCCCcchHHHHHHHHHHHHHHH-HcCCCHH-
Confidence 59999999999998 79999999999999999999999884 23479977766 6899999886 8997642
Q ss_pred CcchHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHh
Q 041575 161 QEGTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLS 240 (263)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~ 240 (263)
+.+.+..+...+. .. +.... ....+...+....+.+++.++++++++. .+.+|+++.|++
T Consensus 184 -~~~~~~~~~~~~~----~~------~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~r~~~------~~~~dll~~ll~ 243 (426)
T 3rwl_A 184 -ERRKLTRWSDVTT----AA------PGGGV---VESWDQRKTELLECAAYFQVLWNERVNK------DPGNDLISMLAH 243 (426)
T ss_dssp -GTHHHHHHHHHHT----CC------TTSSS---CSSHHHHHHHHHHHHHHHHHHHHHHHTS------CCCSSHHHHHHH
T ss_pred -HHHHHHHHHHHHH----hc------cCccc---cccHHHHHHHHHHHHHHHHHHHHHHhhc------CCCCCHHHHHHh
Confidence 2233333322111 10 10001 1223455566788899999999887422 134799999998
Q ss_pred ccccccccCCCCCchhhhhhhc
Q 041575 241 LLYDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 241 ~~~~~~~~~~~~l~~~~i~~~~ 262 (263)
+..++ .++++||.+++
T Consensus 244 ~~~~~------~ls~~el~~~~ 259 (426)
T 3rwl_A 244 SPATR------NMTPEEYLGNV 259 (426)
T ss_dssp CGGGG------GCCHHHHHHHH
T ss_pred cccCC------CCCHHHHHHHH
Confidence 75444 48999998765
No 65
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX, bioremediation, electron transport; HET: HEM; 1.49A {Rhodococcus} PDB: 2wiv_A*
Probab=99.81 E-value=1.8e-18 Score=138.39 Aligned_cols=207 Identities=9% Similarity=0.027 Sum_probs=143.6
Q ss_pred CchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchh-hhhhhhcCccccccCCCChhHHHHH
Q 041575 12 EPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRM-AMEILGYNFLATPSSPYGSYWRETR 90 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~w~~~R 90 (263)
.+|+..+.+++++ |||+++..| .+++++++.+++++.. ..|+.++... ....... ..+++.. +|+.|+++|
T Consensus 20 ~dp~~~~~~lr~~-~pv~~~~~g---~~~v~~~~~v~~~l~d--~~fs~~~~~~~~~~~~~~-~~~l~~~-dg~~h~~~R 91 (394)
T 2wiy_A 20 NNPYPWYRRLQQD-HPVHKLEDG---TYLVSRYADVSHFAKL--PIMSVEPGWADAGPWAVA-SDTALGS-DPPHHTVLR 91 (394)
T ss_dssp HCCHHHHHHHHHH-CSEEECTTS---CEEECCHHHHHHHTTS--TTEECHHHHHTCGGGGGG-GGSGGGC-CTTHHHHHH
T ss_pred cCccHHHHHHHhc-CCeEEecCC---eEEEcCHHHHHHHHcC--CCccccccccccccchhc-ccccccC-CchHHHHHH
Confidence 3678889888765 899987543 7999999999999953 2454443221 1111111 1245555 599999999
Q ss_pred hHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHHHHHHHHHHHccccCCCcchHHHHHH
Q 041575 91 KIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRYTSQEGTDLHEHA 170 (263)
Q Consensus 91 k~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~ 170 (263)
+++++ .|++++++.+.+.+.+.++++++.|. .+.++|+...+..+++++++..+||.+.+ +.+.+...+
T Consensus 92 ~~~~~-~fs~~~~~~~~~~i~~~~~~l~~~~~--------~~~~~d~~~~~~~~~~~vi~~~~~G~~~~--~~~~~~~~~ 160 (394)
T 2wiy_A 92 RQTNK-WFTPKLVDGWVRTTRELVGDLLDGVE--------AGQVIEARRDLAVVPTHVTMARVLQLPED--DADAVMEAM 160 (394)
T ss_dssp HHHHT-TCSHHHHHHHTHHHHHHHHHHHHTCC--------TTCCEEHHHHHTHHHHHHHHHHHHTCCCC--CHHHHHHHH
T ss_pred HHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHh--------ccCCeeHHHHHHhhhHHHHHHHHcCCCHh--HHHHHHHHH
Confidence 99997 79999999999999999999999884 23479999999999999999999998653 323333332
Q ss_pred HHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHhccccccccCC
Q 041575 171 ASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSLLYDNAKQLP 250 (263)
Q Consensus 171 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~ 250 (263)
.... ... ...|. ....++...+...+.+++.++|++++.. +.+|+++.|+++..++
T Consensus 161 ~~~~---~~~---~~~p~------~~~~~~~~~~~~~l~~~~~~~i~~rr~~-------~~~dll~~Ll~~~~~~----- 216 (394)
T 2wiy_A 161 FEAM---LMQ---SAEPA------DGDVDRAAVAFGYLSARVAEMLEDKRVN-------PGDGLADSLLDAARAG----- 216 (394)
T ss_dssp HHHH---GGG---SSSCC------TTHHHHHHHHHHHHHHHHHHHHHHHHHS-------CCSSHHHHHHHHHHTT-----
T ss_pred HHHH---Hhc---cCCcc------chHHHHHHHHHHHHHHHHHHHHHHhhcC-------CCCcHHHHHHHhhhcC-----
Confidence 2211 100 01121 1223445556677888999999888753 2369999999875322
Q ss_pred CCCchhhhhhhc
Q 041575 251 DSDADTVIKALC 262 (263)
Q Consensus 251 ~~l~~~~i~~~~ 262 (263)
.++++|+.+++
T Consensus 217 -~ls~~el~~~~ 227 (394)
T 2wiy_A 217 -EITESEAIATI 227 (394)
T ss_dssp -SSCHHHHHHHH
T ss_pred -CCCHHHHHHHH
Confidence 59999998765
No 66
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450 fold, structural genomics, PSI, protein structure initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A* 3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Probab=99.81 E-value=2.3e-19 Score=143.66 Aligned_cols=202 Identities=8% Similarity=0.046 Sum_probs=140.1
Q ss_pred CchhHHHHHHHhhcCCeEEEEe-cCeeEEEecCHHHHHHHHhhCCcccc-C-Ccch--hhh---hhhhcCccccccCCCC
Q 041575 12 EPTHRILGNMANKYGPIFTMKM-GVNRALVVSNSEITKECFTTNDKALA-S-RPRR--MAM---EILGYNFLATPSSPYG 83 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~i~~p~~~~~i~~~~~~~~~-~-~~~~--~~~---~~~~~~~~~~~~~~~g 83 (263)
.+++..+.+| ++||||+++++ ++.+.+++++|+++++++.++ .|. + ++.. ... ......+.++++.
T Consensus 16 ~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--- 89 (396)
T 1n40_A 16 DRIPDAVAEL-RTREPIRKVRTITGAEAWLVSSYALCTQVLEDR--RFSMKETAAAGAPRLNALTVPPEVVNNMGNI--- 89 (396)
T ss_dssp SSCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHHTCT--TEESGGGGSTTCCCSSCCSSCGGGGGHHHHH---
T ss_pred cCccHHHHHH-HHhCCeeEeecCCCceEEEEecHHHHHHHHhCC--CcccccCccccccccccccCCchhhhhhhhH---
Confidence 6789999999 99999999997 788999999999999999654 355 4 4321 111 0011011244443
Q ss_pred hhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHH-HHHHHHHHHHHHccccCCCc
Q 041575 84 SYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLE-GTTFDIIIRIIEGKRYTSQE 162 (263)
Q Consensus 84 ~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~-~~~~~vi~~~~fG~~~~~~~ 162 (263)
.|+++|+++++ .|++. ++.+.+.+.+.++++++.|.+ . +.++|+...+. .+++++|+. +||.+++ +
T Consensus 90 -~h~~~R~~~~~-~fs~~-~~~~~~~i~~~~~~l~~~l~~-----~--~~~~d~~~~~~~~~~~~vi~~-~~G~~~~--~ 156 (396)
T 1n40_A 90 -ADAGLRKAVMK-AITPK-APGLEQFLRDTANSLLDNLIT-----E--GAPADLRNDFADPLATALHCK-VLGIPQE--D 156 (396)
T ss_dssp -HHTTCHHHHHH-HTSSC-STTHHHHHHHHHHHHHHHHHH-----H--CSCEETTTTTHHHHHHHHHHH-HHTCCGG--G
T ss_pred -HHHHHHHHHHH-hhChH-HHHhHHHHHHHHHHHHHHHHh-----c--CCCccHHHHHHHHhHHHHHHH-HhCCChh--h
Confidence 89999999998 68999 999999999999999999973 1 34799986664 899999999 8998763 2
Q ss_pred chHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHhcc
Q 041575 163 GTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSLL 242 (263)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~~~ 242 (263)
.+++......+.... ...| .++..+....+ +++.+.|+ +.+ .++|+++.|+++.
T Consensus 157 ~~~~~~~~~~~~~~~------------~~~p----~~~~~~~~~~~-~~~~~~i~------~~~---~~~dll~~ll~~~ 210 (396)
T 1n40_A 157 GPKLFRSLSIAFMSS------------ADPI----PAAKINWDRDI-EYMAGILE------NPN---ITTGLMGELSRLR 210 (396)
T ss_dssp HHHHHHTHHHHTBCC------------SSCC----HHHHHHHHHHH-HHHHHHHH------CTT---CCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc------------cCCC----HHHHHHHHHHH-HHHHHHHh------CCC---CCCCHHHHHHHhh
Confidence 233444333322110 0112 13455555666 77777776 111 2379999999875
Q ss_pred -ccccccCCCCCchhhhhhhc
Q 041575 243 -YDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 243 -~~~~~~~~~~l~~~~i~~~~ 262 (263)
.++ +..+++++|.+++
T Consensus 211 ~~~~----~~~l~~~~i~~~~ 227 (396)
T 1n40_A 211 KDPA----YSHVSDELFATIG 227 (396)
T ss_dssp TSGG----GTTSCHHHHHHHH
T ss_pred cccc----cCCCCHHHHHHHH
Confidence 212 3469999998765
No 67
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A*
Probab=99.79 E-value=3.2e-18 Score=141.14 Aligned_cols=147 Identities=16% Similarity=0.141 Sum_probs=106.4
Q ss_pred CcccccccCCCCchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcch--hhhhhhhcCccccc
Q 041575 1 MIGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRR--MAMEILGYNFLATP 78 (263)
Q Consensus 1 llG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 78 (263)
++||++++. .+++.++.+|+++|||||++++|+.++++++||+++++++.++...+..++.. .....++ .+++
T Consensus 29 ~iG~~~~~~--~~~~~~~~~l~~kYG~i~~v~lg~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~~~~~~~g---~~~~ 103 (498)
T 3b6h_A 29 WLGYALDFG--KDAASFLTRMKEKHGDIFTILVGGRYVTVLLDPHSYDAVVWEPRTRLDFHAYAIFLMERIFD---VQLP 103 (498)
T ss_dssp TTBTHHHHH--HCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHTCCTTTEECCHHHHHHHHHTSC---CCCT
T ss_pred chhhHHHhc--cCHHHHHHHHHHHcCCeEEEEECCeeEEEEcCHHHHHHHHhCccccCCchhhHHHHHHHHcC---CCcc
Confidence 578988886 57899999999999999999999999999999999999996554323333322 1222222 2444
Q ss_pred cCCCChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHHHHHHHHHHHcccc
Q 041575 79 SSPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRY 158 (263)
Q Consensus 79 ~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~ 158 (263)
.. +|+.| |+++.+ .|+...++.+.+.+.+.+...++..... .......+++...+..+++++++.++||.++
T Consensus 104 ~~-~~~~~---rr~~~~-~~~~~~l~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~l~~~~~~vi~~~~~~~~fG~~~ 175 (498)
T 3b6h_A 104 HY-SPSDE---KARMKL-TLLHRELQALTEAMYTNLHAVLLGDATE---AGSGWHEMGLLDFSYSFLLRAGYLTLYGIEA 175 (498)
T ss_dssp TC-CHHHH---HHHHHT-TSSHHHHHHHHHHHHHHHHHHHHHHHHH---HCSSCEEEEHHHHHHHHHHHHHHHHHHCBSC
T ss_pred cc-CHHHH---HHHHHH-hhchHhHHHHHHHHHHHHHHHHhhcccc---cCCCcceecHHHHHHHHHHHHHHHhhcCccc
Confidence 44 37776 455565 6888888888777777777666654311 1123346889999999999999999999987
Q ss_pred CC
Q 041575 159 TS 160 (263)
Q Consensus 159 ~~ 160 (263)
+.
T Consensus 176 ~~ 177 (498)
T 3b6h_A 176 LP 177 (498)
T ss_dssp SS
T ss_pred cc
Confidence 55
No 68
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A {Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Probab=99.78 E-value=1.3e-18 Score=140.18 Aligned_cols=207 Identities=12% Similarity=0.039 Sum_probs=141.0
Q ss_pred CchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcc-hhh-h-----hhhhcCccccccCCCCh
Q 041575 12 EPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPR-RMA-M-----EILGYNFLATPSSPYGS 84 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~-~~~-~-----~~~~~~~~~~~~~~~g~ 84 (263)
.+|+.+ ++.++|||++++.+|+.. ++|++++++++|+.++. +..... ... . ........+++.. +|+
T Consensus 33 ~~P~~~--~~lr~~gpv~~~~~g~~~-~vv~~~~~v~~vL~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-dg~ 106 (416)
T 3p3o_A 33 NFSWDS--PEVAEAREKSWIARTPLA-LLVLRYAEADQLARDKR--LISGFRGLVDMVGTPEGPVRDFMVDFLQSL-DGA 106 (416)
T ss_dssp TCCTTS--HHHHHHHHHCSEEECSSS-EEECSHHHHHHHHHCTT--EECSHHHHHHHHTCCSSHHHHHHHHSGGGC-CHH
T ss_pred cCCchH--HHHHHhCCccccccCCCc-eEEeCHHHHHHHHcCcc--cccCCccccccccccccchhhhhcCccccC-Cch
Confidence 567777 445579999999987666 99999999999996543 322221 100 0 0000011245555 599
Q ss_pred hHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHH-HHHHHHHHHHHHHHccccCCCcc
Q 041575 85 YWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHW-LEGTTFDIIIRIIEGKRYTSQEG 163 (263)
Q Consensus 85 ~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~-~~~~~~~vi~~~~fG~~~~~~~~ 163 (263)
.|+++||++++ .|++.+++.+.+.+.+.++++++.| . . + ++|+... ...+++++|+. +||.+.+ +.
T Consensus 107 ~h~~~Rr~~~~-~fs~~~l~~~~~~i~~~~~~ll~~l-~-----~-g--~~d~~~~~~~~~~~~vi~~-l~G~~~~--~~ 173 (416)
T 3p3o_A 107 DHRRLRGLATH-PFTPRRITAVQPFVRSTVEQLIDKL-P-----Q-G--DFDFVQHFPHPLPALVMCQ-LLGFPLE--DY 173 (416)
T ss_dssp HHHHHHHTTCG-GGSHHHHHHHHHHHHHHHHHHHHTC-C-----S-S--SEEHHHHTTTHHHHHHHHH-HHTCCGG--GH
T ss_pred HHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHHHHHhh-c-----c-C--CccHHHHHHHHHHHHHHHH-HhCCCHH--HH
Confidence 99999999997 7999999999999999999999988 3 1 1 4896554 45699999998 5897652 22
Q ss_pred hHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHhccc
Q 041575 164 TDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSLLY 243 (263)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~~~~ 243 (263)
+.+......+... +... ......+...++...+.+++.++|+++++. ..+|+++.|+++..
T Consensus 174 ~~~~~~~~~~~~~---------~~~~---~~~~~~~~~~~~~~~l~~~~~~~i~~rr~~-------~~~dll~~ll~~~~ 234 (416)
T 3p3o_A 174 DTVGRLSIETNLG---------LALS---NDQDILVKVEQGLGRMFDYLVAAIEKRKVE-------PGDDLTSDIVRAFH 234 (416)
T ss_dssp HHHHHHHHTTCGG---------GTTC---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHS-------CCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh---------cccc---cchhhHHHHHHHHHHHHHHHHHHHHHHHhC-------CCccHHHHHHHhhc
Confidence 2333322221111 1110 111234566777888999999999998864 33799999998754
Q ss_pred cccccCCCCCchhhhhhhc
Q 041575 244 DNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 244 ~~~~~~~~~l~~~~i~~~~ 262 (263)
++ .++++||.+++
T Consensus 235 ~~------~ls~~el~~~~ 247 (416)
T 3p3o_A 235 DG------VLDDYELRTLV 247 (416)
T ss_dssp TT------SSCHHHHHHHH
T ss_pred cC------CCCHHHHHHHH
Confidence 32 79999998775
No 69
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Probab=99.78 E-value=3e-18 Score=135.76 Aligned_cols=193 Identities=11% Similarity=0.035 Sum_probs=135.5
Q ss_pred hhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcc-hh-hh-------hhhhcC-ccccccCCCC
Q 041575 14 THRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPR-RM-AM-------EILGYN-FLATPSSPYG 83 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~-~~-~~-------~~~~~~-~~~~~~~~~g 83 (263)
|+..+.+++ +||||+++. | .+++++|+++++|+.+. ..|++++. .. .. ...+.. ..++++.+ |
T Consensus 1 p~~~~~~lr-~~gpv~~~~-g---~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d-g 73 (367)
T 3b4x_A 1 MYDWFKQMR-KESPVYYDG-K---VWNLFKYEDCKMVLNDH-KRFSSNLTGYNDKLEMLRSGKVFFDIPTRYTMLTSD-P 73 (367)
T ss_dssp CHHHHHHHH-HHCSEEECS-S---SEEECSHHHHHHHHHCT-TTEECCCSSTTTTHHHHHHTCCCCCCGGGSSGGGCC-T
T ss_pred CCHHHHHHH-HcCCceeeC-C---EEEEecHHHHHHHHcCc-hhhccCcccccccccccccccchhhcccccccccCC-c
Confidence 456778885 799999986 3 89999999999999754 46776642 11 11 111100 13677665 9
Q ss_pred hhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHH-HHHHHHHHHHHHHccccCCCc
Q 041575 84 SYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWL-EGTTFDIIIRIIEGKRYTSQE 162 (263)
Q Consensus 84 ~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~ 162 (263)
+.|+++|+++++ .|++.+++. +.+.+.++++++.|. + ++|+...+ ..+++++|+. +||.+ + +
T Consensus 74 ~~h~~~R~~~~~-~fs~~~l~~--~~i~~~~~~l~~~l~---------g-~~d~~~~~~~~~~~~vi~~-~~G~~-~--~ 136 (367)
T 3b4x_A 74 PLHDELRNLTAD-AFNPSNLPV--DFVREVTVKLLSELD---------E-EFDVIESFAIPLPILVISK-MLGIN-P--D 136 (367)
T ss_dssp THHHHHHHTTGG-GGSGGGSCH--HHHHHHHHHHHHTCC---------S-EEEHHHHTTTHHHHHHHHH-HHTCC-C--C
T ss_pred hhHHHHHHHHHH-hcCHhhhcc--hHHHHHHHHHHHhcc---------C-CcchHHHHHHhhHHHHHHH-HcCCC-C--c
Confidence 999999999998 789999888 899999999998872 2 49999765 7999999999 79988 3 3
Q ss_pred chHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHhcc
Q 041575 163 GTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSLL 242 (263)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~~~ 242 (263)
.+.+....+.+...+. ..|.. .+.. ++...+.+++.+.|+++++. +.+|+++.|+++
T Consensus 137 ~~~~~~~~~~~~~~~~------~~p~~--------~~~~-~~~~~~~~~~~~~i~~r~~~-------~~~dll~~ll~~- 193 (367)
T 3b4x_A 137 VKKVKDWSDLVALRLG------RADEI--------FSIG-RKYLELISFSKKELDSRKGK-------EIVDLTGKIANS- 193 (367)
T ss_dssp HHHHHHHHHHHHTTTT------STTGG--------GCCC-HHHHHHHHHHHHHHHHHTTT-------CCSSHHHHHHTS-
T ss_pred HHHHHHHHHHHHhccC------CChhh--------HHHH-HHHHHHHHHHHHHHHHHhcC-------CCCCHHHHHHhc-
Confidence 3455555544433211 02211 1112 45567888888888877652 236999999975
Q ss_pred ccccccCCCCCchhhhhhhc
Q 041575 243 YDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 243 ~~~~~~~~~~l~~~~i~~~~ 262 (263)
.++++|+.+++
T Consensus 194 ---------~ls~~el~~~~ 204 (367)
T 3b4x_A 194 ---------NLSELEKEGYF 204 (367)
T ss_dssp ---------SSCHHHHHHHH
T ss_pred ---------cCCHHHHHHHH
Confidence 37888887765
No 70
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.50A {Sulfolobus solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A* 1io9_A* 1io8_A*
Probab=99.77 E-value=9.6e-18 Score=133.00 Aligned_cols=192 Identities=14% Similarity=0.119 Sum_probs=132.2
Q ss_pred hhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcc--h-hhhh----h--hhc-CccccccCCCC
Q 041575 14 THRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPR--R-MAME----I--LGY-NFLATPSSPYG 83 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~--~-~~~~----~--~~~-~~~~~~~~~~g 83 (263)
|+..+.++ ++||||+++ | +.+++++|+++++++.+ ...|++++. . .... . ++. .+.++++.+ |
T Consensus 1 p~~~~~~l-r~~Gpv~~~--g--~~~vv~~~~~v~~vl~~-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-g 73 (368)
T 1io7_A 1 MYDWFSEM-RKKDPVYYD--G--NIWQVFSYRYTKEVLNN-FSKFSSDLTGYHERLEDLRNGKIRFDIPTRYTMLTSD-P 73 (368)
T ss_dssp CHHHHHHH-HHHCSEEEC--S--SCEEECSHHHHHHHHHC-TTTEECCCSSHHHHHHHHTTTCCCCSCGGGSSGGGCC-T
T ss_pred CCHHHHHH-HhcCCeEeE--C--CEEEEecHHHHHHHHcC-cccccccccccccccccccccccccccccccccccCC-C
Confidence 46678888 489999987 4 58999999999999975 446777764 1 1110 1 111 113566665 9
Q ss_pred hhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHH-HHHHHHHHHHHHHccccCCCc
Q 041575 84 SYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWL-EGTTFDIIIRIIEGKRYTSQE 162 (263)
Q Consensus 84 ~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~ 162 (263)
+.|+++|+++++ .|++.+++.+.+.+.+.++++++.| + . + ++|+.+.+ ..+++++|+.+ ||.+++.
T Consensus 74 ~~h~~~R~~~~~-~f~~~~~~~~~~~i~~~~~~l~~~l-~-----~-g--~~d~~~~~~~~~~~~vi~~~-~G~~~~~-- 140 (368)
T 1io7_A 74 PLHDELRSMSAD-IFSPQKLQTLETFIRETTRSLLDSI-D-----P-R--EDDIVKKLAVPLPIIVISKI-LGLPIED-- 140 (368)
T ss_dssp THHHHHHGGGTT-TTCHHHHHHHHHHHHHHHHHHHHTC-C-----T-T--SEEHHHHTTTHHHHHHHHHH-HTCCGGG--
T ss_pred hHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHHHHHh-h-----c-C--CccHHHHHHHHHHHHHHHHH-hCCCHHH--
Confidence 999999999998 7999999999999999999999988 3 1 2 69999866 78999999999 9987632
Q ss_pred chHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHhcc
Q 041575 163 GTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSLL 242 (263)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~~~ 242 (263)
.+.+.... ..+. ..+ ..| ...++..+....+.+++.+.| . +.+|+++.|+++
T Consensus 141 ~~~~~~~~----~~~~-----~~~----~~p--~~~~~~~~~~~~~~~~~~~~i-------~-----~~~d~l~~ll~~- 192 (368)
T 1io7_A 141 KEKFKEWS----DLVA-----FRL----GKP--GEIFELGKKYLELIGYVKDHL-------N-----SGTEVVSRVVNS- 192 (368)
T ss_dssp HHHHHHHG----GGCT-----TSC----CCT--TCHHHHHHHHHHHHHHHHHHT-------T-----SSCHHHHHHHTS-
T ss_pred HHHHHHHH----HHHH-----hcc----CCh--HHHHHHHHHHHHHHHHHHHHh-------C-----CCCCHHHHHHhc-
Confidence 22222211 1110 000 012 112445556666777777766 1 236999999965
Q ss_pred ccccccCCCCCchhhhhhhc
Q 041575 243 YDNAKQLPDSDADTVIKALC 262 (263)
Q Consensus 243 ~~~~~~~~~~l~~~~i~~~~ 262 (263)
.++++++.+++
T Consensus 193 ---------~l~~~ei~~~~ 203 (368)
T 1io7_A 193 ---------NLSDIEKLGYI 203 (368)
T ss_dssp ---------SCCHHHHHHHH
T ss_pred ---------cCCHHHHHHHH
Confidence 37888887764
No 71
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus} PDB: 2rfc_A*
Probab=99.74 E-value=1.4e-17 Score=130.81 Aligned_cols=179 Identities=12% Similarity=-0.006 Sum_probs=123.4
Q ss_pred hhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcch-hhhhhhhcCccccccCCCChhHHHHHhHHHhhcCChh
Q 041575 23 NKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRR-MAMEILGYNFLATPSSPYGSYWRETRKIATVELLSNH 101 (263)
Q Consensus 23 ~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~ 101 (263)
++||||+++ + .+++++|+++++|+.++ ..|++++.. .. .. .+.++++. +|+.|+++|+++++ .|++.
T Consensus 2 r~~gpv~~~---g--~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~-~~---~~~~l~~~-~g~~~~~~R~~~~~-~fs~~ 69 (343)
T 2rfb_A 2 RLNDPVHYD---G--AWHVYKYSDVKHVLMND-KIFSSNPGNRYS-NA---GGISFITM-DNPEHKEFRDISAP-YFLPS 69 (343)
T ss_dssp -CCCCEEET---T--EEEECSHHHHHHHHHCT-TTEESSCSSCCC-------CCGGGGC-CHHHHHHHHHHHHH-HHSHH
T ss_pred CCcCCeeee---C--eEEEcCHHHHHHHHhCh-hhcccCCcCCCC-Cc---cccccccC-CchHHHHHHHHhhh-hcCHH
Confidence 579999986 3 89999999999999754 467777621 11 11 22356666 49999999999998 78999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHH-HHHHHHHHHHHHHccccCCCcchHHHHHHHHHHHhhhcc
Q 041575 102 RLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWL-EGTTFDIIIRIIEGKRYTSQEGTDLHEHAASFFTLFGKF 180 (263)
Q Consensus 102 ~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (263)
+++.+.+.+.+.++++++.|. ++|+.+.+ ..+++++|+.+ ||.+.+ +.+.+......+...
T Consensus 70 ~l~~~~~~i~~~~~~l~~~l~-----------~~d~~~~~~~~~~~~vi~~~-~G~~~~--~~~~~~~~~~~~~~~---- 131 (343)
T 2rfb_A 70 KINDYKDFIEETSNDLIKNID-----------NKDIISEYAVRLPVNIISKI-LGIPDS--DMPLFKLWSDYIIGN---- 131 (343)
T ss_dssp HHGGGHHHHHHHHHHHHTTCT-----------TSCHHHHTTTHHHHHHHHHH-HTCCGG--GHHHHHHHHHHHHTS----
T ss_pred HHHHHHHHHHHHHHHHHHhcc-----------ccCHHHHHhhhhhHHHHHHH-cCCCHH--HHHHHHHHHHHHhhc----
Confidence 999999999999999988772 58998865 89999999998 998763 333444443333221
Q ss_pred cccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHhccccccccCCCCCchhhhhh
Q 041575 181 VVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSLLYDNAKQLPDSDADTVIKA 260 (263)
Q Consensus 181 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~ 260 (263)
..|.+. . .++. +....+.+++.+.+ .+| ++.|+++..+ +..++++++.+
T Consensus 132 ----~~p~~~-----~-~~~~-~~~~~~~~~~~~~i--------------~~d-l~~ll~~~~~-----~~~l~~~ei~~ 180 (343)
T 2rfb_A 132 ----KRDENF-----N-YVNN-RMVSRLLEIFKSDS--------------HGI-INVLAGSSLK-----NRKLTMDEKIK 180 (343)
T ss_dssp ----CCSSHH-----H-HHHH-HHHHHHHHHHHSCC--------------SSH-HHHHHTCBCS-----SSBCCHHHHHH
T ss_pred ----cCcchh-----h-HHHH-HHHHHHHHHHHHHH--------------hcc-HHHHHhhhcC-----CCCCCHHHHHH
Confidence 012110 1 1233 44455555555444 258 9999976432 34699999987
Q ss_pred hc
Q 041575 261 LC 262 (263)
Q Consensus 261 ~~ 262 (263)
++
T Consensus 181 ~~ 182 (343)
T 2rfb_A 181 YI 182 (343)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 72
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A*
Probab=99.74 E-value=1.5e-17 Score=136.39 Aligned_cols=144 Identities=16% Similarity=0.156 Sum_probs=103.5
Q ss_pred CcccccccCCCCchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcch--hhhhhhhcCccccc
Q 041575 1 MIGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRR--MAMEILGYNFLATP 78 (263)
Q Consensus 1 llG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 78 (263)
++||++++. .+++.++.+|+++||||+++++|+.+++++++|+++++++.++.. ++.++.. .....++ .+++
T Consensus 29 ~iG~~~~~~--~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~-~~~~~~~~~~~~~~~g---~~~~ 102 (475)
T 3b98_A 29 WLGHALEFG--KDAAKFLTRMKEKHGDIFTVRAAGLYITVLLDSNCYDAVLSDVAS-LDQTSYAQVLMKRIFN---MILP 102 (475)
T ss_dssp TTBTHHHHH--HCHHHHHHHHHHHHCSEEEEEETTEEEEEECCTTTHHHHHTCTTT-EESHHHHHHHHHHTTC---CCCT
T ss_pred hHHhHHHHh--hCHHHHHHHHHHHhCCeEEEEECCceEEEEeCHHHHHHHHcCccc-CCchHHHHHHHHHHhC---CCCC
Confidence 579988876 679999999999999999999999999999999999999965432 3333221 1122222 2444
Q ss_pred cCCCChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHHHHHHHHHHHccc
Q 041575 79 SSPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKR 157 (263)
Q Consensus 79 ~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~ 157 (263)
+.+ |+.| |+++.+ .|+..+++.+.+.+.+++..+++.+.... .......+++...+..+++++++...||.+
T Consensus 103 ~~~-~~~~---R~~~~~-~f~~~~l~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 174 (475)
T 3b98_A 103 SHN-PESE---KKRAEM-HFQGASLTQLSNSMQNNLRLLMTPSEMGL--KTSEWKKDGLFNLCYSLLFKTGYLTVFGAE 174 (475)
T ss_dssp TCC-HHHH---HHHHHH-HTSHHHHHHHHHHHHHHHHHHSSTTTTTC--SSCSCEEEEHHHHHHHHHHHHHHHHHHCCT
T ss_pred CCC-hHHH---HHHHHH-HcChhhHHHHHHHHHHHHHHHHhhccccc--CCCCceeehHHHHHHHHHHHHhhhheeCCc
Confidence 443 6655 577776 78999999999999888888887764210 011223577888888888888887788854
No 73
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A*
Probab=99.71 E-value=4.6e-17 Score=133.35 Aligned_cols=153 Identities=11% Similarity=0.080 Sum_probs=107.3
Q ss_pred CcccccccC---CCC-chhHHHHHHHhhcCC-eEEEEec-------CeeEEEecCHHHHHHHHhh----CCccccCCcch
Q 041575 1 MIGHLHLFG---GPE-PTHRILGNMANKYGP-IFTMKMG-------VNRALVVSNSEITKECFTT----NDKALASRPRR 64 (263)
Q Consensus 1 llG~~~~~~---~~~-~~~~~~~~~~~~yG~-i~~~~~~-------~~~~v~i~~p~~~~~i~~~----~~~~~~~~~~~ 64 (263)
++||++++. ... +++.++.+++++||| ||+++++ .+..|+++++...+.++.. +...+.....
T Consensus 19 ~iG~~~~~~~~~~~~g~~~~~~~~~~~kyG~~vf~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 97 (473)
T 3dan_A 19 FFQPIKDRLEYFYGTGGRDEYFRSRMQKYQSTVFRANMPPGPFVSSNPKVIVLLDAKSFPILFDVSKVEKKDLFTGTYM- 97 (473)
T ss_dssp THHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSEEEEECTTCTTTCSCCEEEEECSTTTGGGGGCTTTEECSSCTTSSSC-
T ss_pred chhhHHHHHHHHHhhcCchHHHHhHHHHhCCeEEEecCCCCCccccCCceEEeecccccceecCCcceecccccccccc-
Confidence 467776541 015 789999999999999 9999986 3455666666655555521 1111211111
Q ss_pred hhhhhhhcCccccccCCCChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHH
Q 041575 65 MAMEILGYNFLATPSSPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGT 144 (263)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~ 144 (263)
......+......++..+|+.|+++|+++.+ .|++ .++.+.+.+.+.++++++.|.+.+. ++.++|+.+++..+
T Consensus 98 ~~~~~~g~~~~~~~~~~~~~~h~~~R~~~~~-~f~~-~~~~~~~~i~~~~~~ll~~~~~~~~----~~~~vdl~~~~~~~ 171 (473)
T 3dan_A 98 PSTKLTGGYRVLSYLDPSEPRHAQLKNLLFF-MLKN-SSNRVIPQFETTYTELFEGLEAELA----KNGKAAFNDVGEQA 171 (473)
T ss_dssp CCGGGGTTSCCGGGCCTTSHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHH----HHSCEECHHHHHHH
T ss_pred CCccccCCCcceeeeCCCcHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHhc----cCCcccHHHHHHHH
Confidence 1112333222233344459999999999998 6888 4899999999999999999974321 23479999999999
Q ss_pred HHHHHHHHHHccccCC
Q 041575 145 TFDIIIRIIEGKRYTS 160 (263)
Q Consensus 145 ~~~vi~~~~fG~~~~~ 160 (263)
++++++.++||.+++.
T Consensus 172 ~~~~i~~~~~G~~~~~ 187 (473)
T 3dan_A 172 AFRFLGRAYFNSNPEE 187 (473)
T ss_dssp HHHHHHHHHHSCCGGG
T ss_pred HHHHHHHHHcCCCCCc
Confidence 9999999999998865
No 74
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid biosynthesis, heme, iron, synthesis, lyase, metal-binding, oxylipin biosynthesis; HET: HEM T25; 1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Probab=99.71 E-value=4.7e-18 Score=140.04 Aligned_cols=153 Identities=13% Similarity=0.166 Sum_probs=110.2
Q ss_pred CcccccccC---CCCchhHHHHHHHhhcCC-eEEEEecCeeE-------EEecCHHHHHHHHhhCC----ccccCCcchh
Q 041575 1 MIGHLHLFG---GPEPTHRILGNMANKYGP-IFTMKMGVNRA-------LVVSNSEITKECFTTND----KALASRPRRM 65 (263)
Q Consensus 1 llG~~~~~~---~~~~~~~~~~~~~~~yG~-i~~~~~~~~~~-------v~i~~p~~~~~i~~~~~----~~~~~~~~~~ 65 (263)
++||++++. ...+++.++.+++++||| ||++++++.++ ++++++...+.++.... ..+.......
T Consensus 38 ~iG~~~~~~~~~~~~~~~~f~~~~~~kyG~~Vf~~~l~~~~~vv~~p~~v~~~~~~~~~~l~~~~~v~k~~~~~~~~~~~ 117 (495)
T 3dsk_A 38 IVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNMPPGAFIAENPQVVALLDGKSFPVLFDVDKVEKKDLLTGTYMPS 117 (495)
T ss_dssp THHHHHHHHHHHTTSCHHHHHHHHHHHHTCSEEEEECSCCTTTCSCCEEEEECSTTTGGGGGCTTTEECSSCTTSSSCCC
T ss_pred ccchHHHHHHHHHhcCcHHHHHHHHHHhCCceEeecCCCCCCccCCCCEEEEeCCcceeeecccccccccccccccCCCC
Confidence 578876652 116899999999999999 99999988777 66777776665553211 1111111111
Q ss_pred hhhhhhcCccccccCCCChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHH
Q 041575 66 AMEILGYNFLATPSSPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTT 145 (263)
Q Consensus 66 ~~~~~~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~ 145 (263)
. ..++......++..+|+.|+++|+++.+ .|++.. ..+.+.+.+.+.++++.|.+.+. ++.++|+.+++..++
T Consensus 118 ~-~l~g~~~~~~~~~~~g~~h~~~R~~~~~-~f~~~~-~~~~~~i~~~~~~ll~~~~~~~~----~~~~vdl~~~~~~~~ 190 (495)
T 3dsk_A 118 T-ELTGGYRILSYLDPSEPKHEKLKNLLFF-LLKSSR-NRIFPEFQATYSELFDSLEKELS----LKGKADFGGSSDGTA 190 (495)
T ss_dssp G-GGGTTCCCGGGCCTTSHHHHHHHHHHHH-HHHHTT-TTHHHHHHHHHHHHHHHHHHHHH----HHSSEESHHHHHHHH
T ss_pred c-cccCCCcceeeeCCCchHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHhc----cCCCccHHHHHHHHH
Confidence 2 4444322233444459999999999997 678754 88999999999999999974221 234799999999999
Q ss_pred HHHHHHHHHccccCC
Q 041575 146 FDIIIRIIEGKRYTS 160 (263)
Q Consensus 146 ~~vi~~~~fG~~~~~ 160 (263)
+++++.++||.+++.
T Consensus 191 ~~~i~~~~~G~~~~~ 205 (495)
T 3dsk_A 191 FNFLARAFYGTNPAD 205 (495)
T ss_dssp HHHHHHHHHSCCGGG
T ss_pred HHHHHHHHcCCCcch
Confidence 999999999998765
No 75
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent, mono-oxygenases, oxidoreductase; HET: HEM; 2.00A {Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Probab=99.65 E-value=5.9e-15 Score=118.61 Aligned_cols=211 Identities=11% Similarity=0.060 Sum_probs=137.7
Q ss_pred CchhHHHHHHHhhcC-CeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchhhhhhhhcCccccccCCCChhHHHHH
Q 041575 12 EPTHRILGNMANKYG-PIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRMAMEILGYNFLATPSSPYGSYWRETR 90 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG-~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R 90 (263)
.++|..+.++++..+ |++..-.+ ....+|++++++++|+. +...|+++....... .+.....++...++++|+++|
T Consensus 37 ~~~~~~~~~lr~~~~~~~~~~~~~-gg~W~vtr~~dv~~vl~-d~~~fs~~~~~~~~~-~~~~~~~~~~~~D~p~H~r~R 113 (417)
T 4dxy_A 37 DGYHEAWKKVQHPGIPDLIWTPFT-GGHWIATNGDTVKEVYS-DPTRFSSEVIFLPKE-AGEKAQMVPTKMDPPEHTPYR 113 (417)
T ss_dssp GCHHHHHHHHSCTTCCSEEEESST-TSEEEECSHHHHHHHHT-CTTTEESSCCSSSTT-SSCSSCTTTTTCCTTTHHHHH
T ss_pred cChHHHHHHHHhhCCCCEEecCCC-CCEEEECCHHHHHHHHc-CchhccCCCcccccc-cccccccCcccCCcHHHHHHH
Confidence 468888888887744 45544333 35789999999999994 445676554321111 111111333344599999999
Q ss_pred hHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHH-HHHHHHHHHHHHHccccCCCcchHHHHH
Q 041575 91 KIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWL-EGTTFDIIIRIIEGKRYTSQEGTDLHEH 169 (263)
Q Consensus 91 k~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~ 169 (263)
++++| .|++++++.+.+.|.+.++++++.|.. . .++|+...+ ..+++.+++. ++|... .+...+...
T Consensus 114 rll~~-~Fs~~~l~~~~~~i~~~~~~lld~l~~------~--g~~D~v~~~a~~l~~~vi~~-llg~~~--~d~~~~~~~ 181 (417)
T 4dxy_A 114 KALDK-GLNLAKIRKVEDKVREVASSLIDSFAA------R--GECDFAAEYAELFPVHVFMA-LADLPL--EDIPVLSEY 181 (417)
T ss_dssp HHHHH-HHCHHHHHTTHHHHHHHHHHHHHHHHT------T--SEEEHHHHTTTTHHHHHHHH-HTTCCG--GGHHHHHHH
T ss_pred HHhhh-hcCHHHHHHHHHHHHHHHHHHHHHhhh------c--CCeeeHHHHHhhhHHHHHHH-HcCCCH--HHHHHHHhh
Confidence 99998 799999999999999999999999962 2 268865554 5567777766 477654 222333333
Q ss_pred HHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHhccccccccC
Q 041575 170 AASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSLLYDNAKQL 249 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~ 249 (263)
...+.... ...+ .........+...+..++.++++++++. +.+|+++.|+.+..++
T Consensus 182 ~~~~~~~~------------~~~~-~~~~~~~~~~~~~~~~~~~~li~~rr~~-------~~ddl~s~L~~~~~~~---- 237 (417)
T 4dxy_A 182 ARQMTRPE------------GNTP-EEMATDLEAGNNGFYAYVDPIIRARVGG-------DGDDLITLMVNSEING---- 237 (417)
T ss_dssp HHHHHSCC------------CSSH-HHHHHHHHHHHHHHHHHHHHHHHHHTTC-------CCCSHHHHHHTCEETT----
T ss_pred hhhhcccc------------ccCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CccchhhhhccccccC----
Confidence 33221110 0111 1223445566677888888888877642 3479999999875443
Q ss_pred CCCCchhhhhhhc
Q 041575 250 PDSDADTVIKALC 262 (263)
Q Consensus 250 ~~~l~~~~i~~~~ 262 (263)
..++++++.++|
T Consensus 238 -~~~~~~e~~~~~ 249 (417)
T 4dxy_A 238 -ERIAHDKAQGLI 249 (417)
T ss_dssp -EECCHHHHHHHH
T ss_pred -CccchhHHHHHH
Confidence 578999988765
No 76
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A {Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A* 4dnz_A*
Probab=99.57 E-value=6e-14 Score=112.76 Aligned_cols=134 Identities=10% Similarity=0.052 Sum_probs=95.0
Q ss_pred CchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchhh---hhhhhcCccccccCCCChhHHH
Q 041575 12 EPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRMA---MEILGYNFLATPSSPYGSYWRE 88 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~w~~ 88 (263)
.+|+.++.++++ +|||+++ ++.+.++|++++++++++.+ ...|++...... .........+.++..+|+.|++
T Consensus 34 ~dP~~~~~~lR~-~gPV~~~--~~~~~~~vt~~~~v~~vl~d-~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~Dg~~H~r 109 (412)
T 4dnj_A 34 ADPYPEQETLRE-AGPVVYL--DKWNVYGVARYAEVYAVLND-PLTFCSSRGVGLSDFKKEKPWRPPSLILEADPPAHTR 109 (412)
T ss_dssp HSCHHHHHHHHH-HCSSEEE--TTTTEEEECSHHHHHHHHTC-TTTEESTTCSSSSCTTTSCCSSCCCTTTTCCTTHHHH
T ss_pred hCcHHHHHHHHh-cCCEEEE--CCCCEEEECCHHHHHHHHcC-CccccCCCccccccccccccccCCCccccCChHHHHH
Confidence 467888888876 6999865 45578999999999999954 444543322111 1111111113344445999999
Q ss_pred HHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceeh-hHHHHHHHHHHHHHHHHcccc
Q 041575 89 TRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEM-KHWLEGTTFDIIIRIIEGKRY 158 (263)
Q Consensus 89 ~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~-~~~~~~~~~~vi~~~~fG~~~ 158 (263)
+|+++++ .|++++++.+.+.+.+.++++++.+.. .+.++|+ .+....+++++++.+ +|...
T Consensus 110 ~R~~~~~-~Fs~~~l~~~~~~i~~~~~~l~~~~~~-------~~~~~D~v~~~~~~~~~~~i~~l-~g~~~ 171 (412)
T 4dnj_A 110 TRAVLSK-VLSPATMKRLRDGFAAAADAKIDELLA-------RGGNIDAIADLAEAYPLSVFPDA-MGLKQ 171 (412)
T ss_dssp HHHHHHH-HTCHHHHHHHHHHHHHHHHHHHHHHHH-------TTSEEETCCCCCCHHHHHHHHHH-HTCCS
T ss_pred HHhhccc-ccCHHHHHHhhHHHHHHHHHHHHhhhc-------cCCCceeHHHHHhhhhHhHHHHH-cCCch
Confidence 9999998 799999999999999999999999863 2236775 556677888888876 55443
No 77
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=97.91 E-value=2.1e-07 Score=73.52 Aligned_cols=113 Identities=8% Similarity=0.050 Sum_probs=74.0
Q ss_pred CchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchh--h-------hhhhhcCccccccCCC
Q 041575 12 EPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRM--A-------MEILGYNFLATPSSPY 82 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~~ 82 (263)
.+++..+.+++++ ||+++. .+.+++++++++++|+.+ ..|++++... . ...+ . .++++.+
T Consensus 59 ~dp~~~~~~lr~~--pV~~~~---~~~~vv~~~~~v~~vl~d--~~f~~~~~~~~~~~~~~~~~~~~~--~-~~l~~~d- 127 (381)
T 2yjn_B 59 DDPQRRYRSMRES--GVRRSR---TETWVVADHATARQVLDD--PAFTRATGRTPEWMRAAGAPPAEW--A-QPFRDVH- 127 (381)
T ss_dssp SCCHHHHHHHHHH--CEEECS---SSCEEECSHHHHHHHHHC--SSEESSCCCCCHHHHHHTCCHHHH--T-HHHHHHH-
T ss_pred cCchHHHHHHHhC--CceeCC---CCEEEEcCHHHHHHHHcC--CCcCCCcccccccccccccccchh--h-hhhhhCC-
Confidence 5789999999976 999863 568999999999999965 3566554211 0 1111 1 2556665
Q ss_pred ChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHH-HHHHHHHHHHHHHccccCC
Q 041575 83 GSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWL-EGTTFDIIIRIIEGKRYTS 160 (263)
Q Consensus 83 g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~ 160 (263)
|+.| .+ .|+ . .+.+.+.++++++.|. .++|+...+ ..+++++|+++ ||.+.+.
T Consensus 128 g~~H-------~~-~Ft-----~-~~~i~~~~~~ll~~~~----------g~~Dl~~~~a~~l~~~vi~~l-~G~~~~~ 181 (381)
T 2yjn_B 128 AASW-------EG-EVP-----D-VGELAESFAGLLPGAG----------ARLDLVGDFAWQVPVQGMTAV-LGAAGVL 181 (381)
T ss_dssp HCCC-------CS-CCC-----C-CSCHHHHTSTTSCC----------------CCCCCCTHHHHHHHHTC------CC
T ss_pred chhh-------hh-ccC-----C-hHHHHHHHHHHHHhcc----------CcchHHHHHHHHHHHHHHHHH-cCCCHHH
Confidence 8999 55 688 3 6788888888888773 268998665 69999999995 9988743
No 78
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=89.98 E-value=1.8 Score=25.13 Aligned_cols=50 Identities=10% Similarity=0.123 Sum_probs=36.6
Q ss_pred cccccccCCCCc----hhHHHHHHHhhcCCeEEEEec-------CeeEEEecCHHHHHHHHhh
Q 041575 2 IGHLHLFGGPEP----THRILGNMANKYGPIFTMKMG-------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 2 lG~~~~~~~~~~----~~~~~~~~~~~yG~i~~~~~~-------~~~~v~i~~p~~~~~i~~~ 53 (263)
+||++.-. .+ ..+.+.++..+||+|..+.+. +--+|...+++.+...+..
T Consensus 6 V~nLp~~~--~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~ 66 (81)
T 2krb_A 6 VDNVPQVG--PDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKN 66 (81)
T ss_dssp EESCCCCC--TTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTT
T ss_pred EeCCCCCc--HHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHH
Confidence 57775432 22 457788899999999988874 3347888999999988853
No 79
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.42 E-value=1.6 Score=27.03 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=33.5
Q ss_pred hhHHHHHHHhhcCCeEEEEec--------CeeEEEecCHHHHHHHHhhCCccc
Q 041575 14 THRILGNMANKYGPIFTMKMG--------VNRALVVSNSEITKECFTTNDKAL 58 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~--------~~~~v~i~~p~~~~~i~~~~~~~~ 58 (263)
..+.+.++..+||+|..+.+. |--+|...+++.+..++..+...+
T Consensus 24 te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~ 76 (103)
T 1s79_A 24 TLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKY 76 (103)
T ss_dssp CHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCC
T ss_pred CHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEE
Confidence 456788888999999888763 245788899999999986433333
No 80
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.03 E-value=0.89 Score=27.73 Aligned_cols=61 Identities=10% Similarity=0.177 Sum_probs=41.7
Q ss_pred cccccccCCCCchhHHHHHHHhhcC-CeEEEEecCeeEEEecCHHHHHHHHhh-CCccccCCcc
Q 041575 2 IGHLHLFGGPEPTHRILGNMANKYG-PIFTMKMGVNRALVVSNSEITKECFTT-NDKALASRPR 63 (263)
Q Consensus 2 lG~~~~~~~~~~~~~~~~~~~~~yG-~i~~~~~~~~~~v~i~~p~~~~~i~~~-~~~~~~~~~~ 63 (263)
+|||..-.........+.++..+|| +|..+ .++.-+|...+.+.+...+.. ++..+..|+.
T Consensus 14 V~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 14 VYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-TGCSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp EESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-ecCEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 5666543211223445788999995 99888 468889999999999888854 4445555554
No 81
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=85.77 E-value=2.6 Score=25.95 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=34.8
Q ss_pred hhHHHHHHHhhcCCeEEEEec-------CeeEEEecCHHHHHHHHhh-CCccccC
Q 041575 14 THRILGNMANKYGPIFTMKMG-------VNRALVVSNSEITKECFTT-NDKALAS 60 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~-------~~~~v~i~~p~~~~~i~~~-~~~~~~~ 60 (263)
....+.++..+||+|..+.+. +.-+|...+++.+...+.. ++..+..
T Consensus 34 t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 34 LKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp HHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred HHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 457788999999999998874 3457888899888888754 3444433
No 82
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=84.72 E-value=2.2 Score=24.17 Aligned_cols=50 Identities=10% Similarity=0.119 Sum_probs=35.2
Q ss_pred cccccccCCCCchhHHHHHHHhhcCCeEEEEec---------CeeEEEecCHHHHHHHHhhCC
Q 041575 2 IGHLHLFGGPEPTHRILGNMANKYGPIFTMKMG---------VNRALVVSNSEITKECFTTND 55 (263)
Q Consensus 2 lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~~p~~~~~i~~~~~ 55 (263)
+||++.- -..+.+.++..+||+|..+.+. +.-+|...+++.++.++..+.
T Consensus 4 v~nLp~~----~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~ 62 (75)
T 1iqt_A 4 VGGLSPD----TPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY 62 (75)
T ss_dssp ESCCCSS----CCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSS
T ss_pred EeCCCCC----CCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCC
Confidence 4566432 2356678888899999888762 234688899999999986443
No 83
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=83.40 E-value=3.2 Score=26.83 Aligned_cols=47 Identities=15% Similarity=0.260 Sum_probs=32.9
Q ss_pred HHHHHHHhhcCCeEEEEec------CeeEEEecCHHHHHHHHhh-CCccccCCc
Q 041575 16 RILGNMANKYGPIFTMKMG------VNRALVVSNSEITKECFTT-NDKALASRP 62 (263)
Q Consensus 16 ~~~~~~~~~yG~i~~~~~~------~~~~v~i~~p~~~~~i~~~-~~~~~~~~~ 62 (263)
..+.++..+||+|..+.+. |.-+|...+++.+...+.. ++..+..++
T Consensus 48 ~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 48 ALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp HHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred HHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 3466789999999888763 2457888999988888754 333443443
No 84
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=82.47 E-value=3.6 Score=23.25 Aligned_cols=50 Identities=10% Similarity=0.121 Sum_probs=34.8
Q ss_pred cccccccCCCCchhHHHHHHHhhcCCeEEEEecC---------eeEEEecCHHHHHHHHhhCC
Q 041575 2 IGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGV---------NRALVVSNSEITKECFTTND 55 (263)
Q Consensus 2 lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~~p~~~~~i~~~~~ 55 (263)
+||++.- -..+.+.++..+||+|..+.+.. --+|...+++.++.++.-+.
T Consensus 4 v~nlp~~----~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 62 (75)
T 2mss_A 4 VGGLSVN----TTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHF 62 (75)
T ss_dssp EECCCSS----CCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSC
T ss_pred EecCCCC----CCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCC
Confidence 5666532 23566788889999998887632 34678889999998885333
No 85
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=81.94 E-value=3 Score=25.10 Aligned_cols=37 Identities=8% Similarity=0.249 Sum_probs=29.2
Q ss_pred HHHHHHhhcCCeEEEEec------CeeEEEecCHHHHHHHHhh
Q 041575 17 ILGNMANKYGPIFTMKMG------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 17 ~~~~~~~~yG~i~~~~~~------~~~~v~i~~p~~~~~i~~~ 53 (263)
.+.++..+||+|..+.+. +.-+|...+++.+...+..
T Consensus 28 ~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~ 70 (97)
T 1nu4_A 28 SLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 70 (97)
T ss_dssp HHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 444899999999988774 4467888999999888853
No 86
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=81.76 E-value=4.3 Score=24.09 Aligned_cols=37 Identities=11% Similarity=0.212 Sum_probs=29.9
Q ss_pred hhHHHHHHHhhcCCeEEEEec----CeeEEEecCHHHHHHH
Q 041575 14 THRILGNMANKYGPIFTMKMG----VNRALVVSNSEITKEC 50 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~----~~~~v~i~~p~~~~~i 50 (263)
..+.+.++..+||+|..+.+. |--+|...+++.++.+
T Consensus 24 te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 24 TAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp CHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHH
T ss_pred CHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHH
Confidence 356788899999999998875 3567889999998854
No 87
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=81.04 E-value=7.7 Score=24.10 Aligned_cols=50 Identities=6% Similarity=0.113 Sum_probs=36.3
Q ss_pred hhHHHHHHHhhcCCeEEEEec---CeeEEEecCHHHHHHHHhh-CCccccCCcc
Q 041575 14 THRILGNMANKYGPIFTMKMG---VNRALVVSNSEITKECFTT-NDKALASRPR 63 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~---~~~~v~i~~p~~~~~i~~~-~~~~~~~~~~ 63 (263)
..+.+.++..+||+|..+.+. +.-+|...+++.++..+.. ++..+..++.
T Consensus 23 te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 76 (111)
T 1whx_A 23 LAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPL 76 (111)
T ss_dssp CHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred CHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Confidence 456788899999999998873 3457888999999888753 4444544443
No 88
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=78.98 E-value=6.7 Score=24.17 Aligned_cols=40 Identities=8% Similarity=-0.020 Sum_probs=32.4
Q ss_pred hhHHHHHHHhhcCCeEEEEec--CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMG--VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~--~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+. +.-+|...+++.++..+..
T Consensus 28 t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~ 69 (108)
T 1x4c_A 28 SWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRK 69 (108)
T ss_dssp CHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHH
Confidence 456788899999999888764 4678888999999988854
No 89
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=78.58 E-value=4.6 Score=23.62 Aligned_cols=41 Identities=7% Similarity=0.198 Sum_probs=30.9
Q ss_pred hhHHHHHHHhhcCCeEEEEec---------CeeEEEecCHHHHHHHHhhC
Q 041575 14 THRILGNMANKYGPIFTMKMG---------VNRALVVSNSEITKECFTTN 54 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~~p~~~~~i~~~~ 54 (263)
..+.+.++..+||+|..+.+. +--+|...+++.+..++...
T Consensus 24 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~ 73 (87)
T 3s7r_A 24 SKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 73 (87)
T ss_dssp CHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSS
T ss_pred CHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhC
Confidence 456788888999999887762 12467888999999888543
No 90
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=77.95 E-value=6.7 Score=24.57 Aligned_cols=48 Identities=8% Similarity=-0.007 Sum_probs=35.2
Q ss_pred cccccccCCCCchhHHHHHHHhhcCCeEEEEec--CeeEEEecCHHHHHHHHhh
Q 041575 2 IGHLHLFGGPEPTHRILGNMANKYGPIFTMKMG--VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 2 lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--~~~~v~i~~p~~~~~i~~~ 53 (263)
+|||+. .-..+.+.++..+||+|..+.+. +.-+|...+++.++..+..
T Consensus 21 V~nLp~----~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~ 70 (115)
T 3beg_B 21 VSGLPP----SGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRK 70 (115)
T ss_dssp EEECCS----SCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHH
T ss_pred EeCCCC----CCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHH
Confidence 455543 22355678888999999988874 4567888999999888853
No 91
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.82 E-value=7.7 Score=24.06 Aligned_cols=38 Identities=8% Similarity=0.100 Sum_probs=30.8
Q ss_pred hHHHHHHHhhcCCeEEEEec---CeeEEEecCHHHHHHHHh
Q 041575 15 HRILGNMANKYGPIFTMKMG---VNRALVVSNSEITKECFT 52 (263)
Q Consensus 15 ~~~~~~~~~~yG~i~~~~~~---~~~~v~i~~p~~~~~i~~ 52 (263)
.+.+.++..+||+|..+.+. +.-+|-..+++.+.....
T Consensus 30 e~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~ 70 (105)
T 1sjq_A 30 EGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVN 70 (105)
T ss_dssp HHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 45688899999999988874 346888899998888875
No 92
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.19 E-value=4.8 Score=24.19 Aligned_cols=36 Identities=8% Similarity=0.173 Sum_probs=28.1
Q ss_pred HHHHHhhcCCeEEEEec------CeeEEEecCHHHHHHHHhh
Q 041575 18 LGNMANKYGPIFTMKMG------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 18 ~~~~~~~yG~i~~~~~~------~~~~v~i~~p~~~~~i~~~ 53 (263)
+.++..+||+|..+.+. +.-+|...+++.+...+..
T Consensus 30 l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~ 71 (96)
T 2dgx_A 30 LQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNS 71 (96)
T ss_dssp HHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHH
T ss_pred HHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHH
Confidence 34889999999988874 2357888899999888753
No 93
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=76.63 E-value=10 Score=23.07 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=34.5
Q ss_pred hhHHHHHHHhhcCCeEEEEecC----------eeEEEecCHHHHHHHHhh--CCccccCC
Q 041575 14 THRILGNMANKYGPIFTMKMGV----------NRALVVSNSEITKECFTT--NDKALASR 61 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~----------~~~v~i~~p~~~~~i~~~--~~~~~~~~ 61 (263)
..+.+.++..+||+|..+.+.. .-+|...+++.+..++.. +...+..+
T Consensus 28 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 28 NQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp CHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred CHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 3566888889999999888733 247788999999988854 34444433
No 94
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=75.84 E-value=10 Score=22.68 Aligned_cols=39 Identities=10% Similarity=0.095 Sum_probs=29.1
Q ss_pred hhHHHHHHHhhcCCeEEEEecC---eeEEEecCHHHHHHHHh
Q 041575 14 THRILGNMANKYGPIFTMKMGV---NRALVVSNSEITKECFT 52 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~---~~~v~i~~p~~~~~i~~ 52 (263)
..+.+.++..+||||..+++.. --+|-..+++.+.....
T Consensus 20 te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~ 61 (89)
T 2wbr_A 20 DGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQM 61 (89)
T ss_dssp CCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHH
Confidence 3568899999999999888633 34777778866666653
No 95
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.58 E-value=8.6 Score=23.14 Aligned_cols=40 Identities=10% Similarity=0.105 Sum_probs=30.8
Q ss_pred hhHHHHHHHhhcCCeEEEEec--------CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMG--------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~--------~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+. +.-+|-..+++.+..++..
T Consensus 30 t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 77 (100)
T 2do4_A 30 TKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMK 77 (100)
T ss_dssp CHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHH
Confidence 355688888999999888763 2347888999999988854
No 96
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=75.47 E-value=7.8 Score=23.51 Aligned_cols=48 Identities=13% Similarity=0.048 Sum_probs=33.8
Q ss_pred cccccccCCCCchhHHHHHHHhhcCCeEEEEecC---------eeEEEecCHHHHHHHHhh
Q 041575 2 IGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGV---------NRALVVSNSEITKECFTT 53 (263)
Q Consensus 2 lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~~p~~~~~i~~~ 53 (263)
+||++.- -..+.+.++..+||+|..+.+.. --+|-..+++.+...+..
T Consensus 24 V~nLp~~----~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ 80 (99)
T 4fxv_A 24 VNYLPQN----MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80 (99)
T ss_dssp EESCCTT----CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EeCCCCC----CCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHH
Confidence 4566532 23567888889999998887621 136888899999888753
No 97
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.90 E-value=7.4 Score=23.72 Aligned_cols=45 Identities=11% Similarity=0.173 Sum_probs=32.8
Q ss_pred hhHHHHHHHhhcCCeEEEEecC---------eeEEEecCHHHHHHHHhhCCccc
Q 041575 14 THRILGNMANKYGPIFTMKMGV---------NRALVVSNSEITKECFTTNDKAL 58 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~~p~~~~~i~~~~~~~~ 58 (263)
..+.+.++..+||+|..+.+.. .-+|...+++.+..++..+...+
T Consensus 29 t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~ 82 (105)
T 2dh8_A 29 TQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTL 82 (105)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEE
T ss_pred CHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeE
Confidence 3566788889999998877632 24678899999999886644334
No 98
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=74.79 E-value=8.5 Score=23.03 Aligned_cols=40 Identities=15% Similarity=0.148 Sum_probs=30.7
Q ss_pred hhHHHHHHHhhcCCeEEEEec------------CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMG------------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~------------~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+. +.-+|...+++.+..++..
T Consensus 18 t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~ 69 (98)
T 2cpf_A 18 TEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQ 69 (98)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHH
Confidence 356678888999999887763 1346788999999999864
No 99
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=74.77 E-value=8.6 Score=24.03 Aligned_cols=48 Identities=15% Similarity=0.199 Sum_probs=34.7
Q ss_pred cccccccCCCCchhHHHHHHHhhcCCeEEEEecC-------eeEEEecCHHHHHHHHhh
Q 041575 2 IGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGV-------NRALVVSNSEITKECFTT 53 (263)
Q Consensus 2 lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~-------~~~v~i~~p~~~~~i~~~ 53 (263)
+|||+. .-..+.+.++..+||+|..+.+.. --+|-..+++.+...+..
T Consensus 10 V~nLp~----~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~ 64 (115)
T 4f25_A 10 IKNLDK----SIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEK 64 (115)
T ss_dssp EESCCT----TCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHH
T ss_pred ECCCCC----CCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHH
Confidence 456543 223567888999999998777631 247899999999988854
No 100
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.70 E-value=12 Score=22.74 Aligned_cols=49 Identities=14% Similarity=0.159 Sum_probs=35.3
Q ss_pred hhHHHHHHHhhcCCeEEEEecC---------eeEEEecCHHHHHHHHhh-CCccccCCc
Q 041575 14 THRILGNMANKYGPIFTMKMGV---------NRALVVSNSEITKECFTT-NDKALASRP 62 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~~p~~~~~i~~~-~~~~~~~~~ 62 (263)
..+.+.++..+||+|..+.+.. .-+|...+++.++.++.. +...+..++
T Consensus 28 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (105)
T 1x5u_A 28 SEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKP 86 (105)
T ss_dssp CHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCB
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 3566888899999999888733 347888999999999864 333443433
No 101
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=74.43 E-value=11 Score=22.19 Aligned_cols=40 Identities=13% Similarity=0.220 Sum_probs=30.4
Q ss_pred hhHHHHHHHhhcCCeEEEEec-------CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMG-------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~-------~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+. +.-+|...+++.++.++..
T Consensus 21 t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~ 67 (92)
T 2dgv_A 21 TWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRM 67 (92)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHH
Confidence 456788888999999887763 2346778899999888753
No 102
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=74.42 E-value=14 Score=23.40 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=35.3
Q ss_pred hhHHHHHHHhhcCCeEEEEec---------CeeEEEecCHHHHHHHHhh-CCccccCCc
Q 041575 14 THRILGNMANKYGPIFTMKMG---------VNRALVVSNSEITKECFTT-NDKALASRP 62 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~~p~~~~~i~~~-~~~~~~~~~ 62 (263)
..+.+.++..+||+|..+.+. +.-+|...+++.+..++.. +...+..+.
T Consensus 35 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 93 (126)
T 3ex7_B 35 TEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 93 (126)
T ss_dssp CHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 356688888999999988873 2347889999999988853 444444443
No 103
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=74.21 E-value=9 Score=23.58 Aligned_cols=39 Identities=26% Similarity=0.304 Sum_probs=31.1
Q ss_pred hhHHHHHHHhhcCCeEEEEec---CeeEEEecCHHHHHHHHh
Q 041575 14 THRILGNMANKYGPIFTMKMG---VNRALVVSNSEITKECFT 52 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~---~~~~v~i~~p~~~~~i~~ 52 (263)
..+.+.++..+||+|..+.+. +.-+|-..+.+.+...+.
T Consensus 28 te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 69 (104)
T 1wex_A 28 VEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVT 69 (104)
T ss_dssp CHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 356788899999999988864 346788899998888874
No 104
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=74.21 E-value=12 Score=22.71 Aligned_cols=40 Identities=10% Similarity=0.125 Sum_probs=30.4
Q ss_pred hhHHHHHHHhhcCCeEEEEec---------CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMG---------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+. +.-+|-..+++.+..++..
T Consensus 36 t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 84 (106)
T 1p27_B 36 TEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 84 (106)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 355688888999999888763 2246788999999888853
No 105
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.34 E-value=12 Score=22.36 Aligned_cols=49 Identities=8% Similarity=0.085 Sum_probs=34.8
Q ss_pred hhHHHHHHHhhcCCeEEEEec---------CeeEEEecCHHHHHHHHhhCCccccCCc
Q 041575 14 THRILGNMANKYGPIFTMKMG---------VNRALVVSNSEITKECFTTNDKALASRP 62 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~~p~~~~~i~~~~~~~~~~~~ 62 (263)
..+.+.++..+||+|..+.+. +.-+|...+++.+..++.-+...+..++
T Consensus 23 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~ 80 (99)
T 2dgs_A 23 GETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKK 80 (99)
T ss_dssp CHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCB
T ss_pred CHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeE
Confidence 355688888999999888773 2347888999999988854444443333
No 106
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=72.32 E-value=13 Score=22.85 Aligned_cols=40 Identities=8% Similarity=0.042 Sum_probs=31.2
Q ss_pred hhHHHHHHHhhcCCeEEEEec---------CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMG---------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~~p~~~~~i~~~ 53 (263)
....+.++..+||+|..+.+. +.-+|-..+++.+..++..
T Consensus 39 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 87 (110)
T 1oo0_B 39 QEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 87 (110)
T ss_dssp CHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 355688889999999988873 2357888999999888853
No 107
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=72.22 E-value=9.9 Score=21.78 Aligned_cols=48 Identities=8% Similarity=0.171 Sum_probs=33.9
Q ss_pred cccccccCCCCchhHHHHHHHhhcCCeEEEEec---------CeeEEEecCHHHHHHHHhh
Q 041575 2 IGHLHLFGGPEPTHRILGNMANKYGPIFTMKMG---------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 2 lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~~p~~~~~i~~~ 53 (263)
+||++. .-..+.+.++..+||+|..+.+. +.-+|...+++.++..+..
T Consensus 6 V~nlp~----~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 62 (83)
T 3md1_A 6 VGDLNV----NVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS 62 (83)
T ss_dssp EECCCT----TCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred EeCCCC----CCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHH
Confidence 455543 22356678888999999887763 1247888999999988853
No 108
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.21 E-value=11 Score=22.73 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=33.8
Q ss_pred hhHHHHHHHhhcCCeEEEEec-------CeeEEEecCHHHHHHHHhh-CCccccCC
Q 041575 14 THRILGNMANKYGPIFTMKMG-------VNRALVVSNSEITKECFTT-NDKALASR 61 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~-------~~~~v~i~~p~~~~~i~~~-~~~~~~~~ 61 (263)
..+.+.++..+||+|..+.+. +.-+|...+++.+..++.. +...+..+
T Consensus 28 t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2d9p_A 28 DDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 83 (103)
T ss_dssp CHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 346688888999999888764 2346888999999988853 33334333
No 109
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.00 E-value=13 Score=22.69 Aligned_cols=49 Identities=8% Similarity=0.129 Sum_probs=34.6
Q ss_pred hhHHHHHHHhhcCCeEE-EEec--------CeeEEEecCHHHHHHHHhhCCccccCCc
Q 041575 14 THRILGNMANKYGPIFT-MKMG--------VNRALVVSNSEITKECFTTNDKALASRP 62 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~-~~~~--------~~~~v~i~~p~~~~~i~~~~~~~~~~~~ 62 (263)
..+.+.++..+||+|.. +.+. +--+|...+++.++..+..+...+..|.
T Consensus 28 te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~ 85 (104)
T 1wg5_A 28 SKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 85 (104)
T ss_dssp CHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSC
T ss_pred CHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcE
Confidence 35678888999998865 5542 2357888999999999976444444443
No 110
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.52 E-value=13 Score=22.40 Aligned_cols=40 Identities=15% Similarity=0.122 Sum_probs=31.1
Q ss_pred hhHHHHHHHhhcCCeEEEEec-------CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMG-------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~-------~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+. +.-+|...+++.+..++..
T Consensus 28 t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~ 74 (103)
T 2cq3_A 28 RDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK 74 (103)
T ss_dssp CHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHH
Confidence 355688888999999888763 2357888999999988853
No 111
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.29 E-value=12 Score=21.50 Aligned_cols=40 Identities=15% Similarity=0.112 Sum_probs=31.3
Q ss_pred hhHHHHHHHhhcCCeEEEEec---CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMG---VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~---~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+. +.-+|-..+++.+...+..
T Consensus 25 t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~ 67 (85)
T 2ytc_A 25 TETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEK 67 (85)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHT
T ss_pred CHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHH
Confidence 356778888999999888764 3457888899999988853
No 112
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.22 E-value=12 Score=22.58 Aligned_cols=39 Identities=13% Similarity=0.098 Sum_probs=30.5
Q ss_pred hhHHHHHHHhhcCCeEEEEecC-------eeEEEecCHHHHHHHHh
Q 041575 14 THRILGNMANKYGPIFTMKMGV-------NRALVVSNSEITKECFT 52 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~-------~~~v~i~~p~~~~~i~~ 52 (263)
..+.+.++..+||+|..+.+.. .-+|...+++.+..++.
T Consensus 28 t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~ 73 (103)
T 2cqi_A 28 TEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALA 73 (103)
T ss_dssp CHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHH
Confidence 3567888889999998887632 34788899999988885
No 113
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.10 E-value=9.2 Score=23.39 Aligned_cols=39 Identities=13% Similarity=0.102 Sum_probs=30.9
Q ss_pred hhHHHHHHHhhcCCeEEEEec---CeeEEEecCHHHHHHHHh
Q 041575 14 THRILGNMANKYGPIFTMKMG---VNRALVVSNSEITKECFT 52 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~---~~~~v~i~~p~~~~~i~~ 52 (263)
..+.+.++..+||.|..+.+. +.-+|-..+++.+...+.
T Consensus 28 te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~ 69 (101)
T 2cq1_A 28 TETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVN 69 (101)
T ss_dssp CHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 356688899999999888764 346888899998888874
No 114
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=70.66 E-value=12 Score=22.85 Aligned_cols=40 Identities=3% Similarity=0.061 Sum_probs=30.1
Q ss_pred hhHHHHHHHhhcCCeEEEEec--------CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMG--------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~--------~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+. +.-+|...+++.+..++..
T Consensus 42 t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 89 (107)
T 3ulh_A 42 SDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 89 (107)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHH
Confidence 345678888999999887663 1347788899999888854
No 115
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=70.49 E-value=10 Score=23.38 Aligned_cols=41 Identities=7% Similarity=0.036 Sum_probs=31.7
Q ss_pred hhHHHHHHHhhcCCeEEEEecC---------eeEEEecCHHHHHHHHhhC
Q 041575 14 THRILGNMANKYGPIFTMKMGV---------NRALVVSNSEITKECFTTN 54 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~~p~~~~~i~~~~ 54 (263)
..+.+.++..+||+|..+.+.. .-+|...+++.+..++...
T Consensus 38 te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~ 87 (109)
T 2rs2_A 38 TQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 87 (109)
T ss_dssp CHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS
T ss_pred CHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC
Confidence 3556888889999998887632 3478889999999988543
No 116
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=70.30 E-value=15 Score=21.97 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=31.3
Q ss_pred hhHHHHHHHhhcCCeEEEEec---------CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMG---------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+. +.-+|...+++.+..++..
T Consensus 21 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 69 (99)
T 1whw_A 21 SEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 69 (99)
T ss_dssp CHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHH
Confidence 355788888999999988873 2357888999999988843
No 117
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.28 E-value=15 Score=22.87 Aligned_cols=45 Identities=9% Similarity=0.098 Sum_probs=33.5
Q ss_pred hhHHHHHHHhhcCCeEEEEecC---------eeEEEecCHHHHHHHHhhCCccc
Q 041575 14 THRILGNMANKYGPIFTMKMGV---------NRALVVSNSEITKECFTTNDKAL 58 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~~p~~~~~i~~~~~~~~ 58 (263)
..+.+.++..+||+|..+.+.. .-+|...+++.++.++......+
T Consensus 30 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~ 83 (116)
T 2cqd_A 30 TDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPII 83 (116)
T ss_dssp CHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEE
T ss_pred CHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcC
Confidence 3566888889999998888743 34788899999999986533333
No 118
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=70.10 E-value=13 Score=21.34 Aligned_cols=40 Identities=10% Similarity=0.135 Sum_probs=30.6
Q ss_pred hhHHHHHHHhhcCCeEEEEecC---------eeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMGV---------NRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+.. .-+|...+++.+...+..
T Consensus 20 ~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 68 (85)
T 3mdf_A 20 DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 68 (85)
T ss_dssp CHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHH
Confidence 3567888889999999887621 247888999999888743
No 119
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=69.95 E-value=10 Score=23.00 Aligned_cols=40 Identities=8% Similarity=-0.008 Sum_probs=30.6
Q ss_pred hhHHHHHHHhhcCCeEEEEec--------CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMG--------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~--------~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+. +.-+|...+++.+..++..
T Consensus 28 t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 75 (105)
T 2dnh_A 28 SEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHA 75 (105)
T ss_dssp CHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 356688888999999888763 2346788999999888753
No 120
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=69.79 E-value=16 Score=22.47 Aligned_cols=48 Identities=10% Similarity=0.134 Sum_probs=33.5
Q ss_pred hHHHHHHHhhcCCeEEEEec-----------CeeEEEecCHHHHHHHHhh-CCccccCCc
Q 041575 15 HRILGNMANKYGPIFTMKMG-----------VNRALVVSNSEITKECFTT-NDKALASRP 62 (263)
Q Consensus 15 ~~~~~~~~~~yG~i~~~~~~-----------~~~~v~i~~p~~~~~i~~~-~~~~~~~~~ 62 (263)
.+-+.+...+||+|..+.+. +.-.|...+++.+...... ++..|..|+
T Consensus 29 ~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~ 88 (105)
T 3v4m_A 29 VEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRV 88 (105)
T ss_dssp HHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred HHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCE
Confidence 34567777899999999874 2236888899888877744 455555444
No 121
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=69.63 E-value=14 Score=21.46 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=32.0
Q ss_pred hhHHHHHHHhhcCCeEEEEecC---------eeEEEecCHHHHHHHHhhCCccc
Q 041575 14 THRILGNMANKYGPIFTMKMGV---------NRALVVSNSEITKECFTTNDKAL 58 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~~p~~~~~i~~~~~~~~ 58 (263)
..+.+.++..+||+|..+.+.. .-+|...+++.+..++.-+...+
T Consensus 19 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~ 72 (89)
T 3ucg_A 19 TAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLF 72 (89)
T ss_dssp CHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEE
T ss_pred CHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEE
Confidence 3566888889999998877621 24788889999988883343333
No 122
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.55 E-value=9.3 Score=24.31 Aligned_cols=39 Identities=10% Similarity=0.119 Sum_probs=30.8
Q ss_pred hhHHHHHHHhhcCCeEEEEec---CeeEEEecCHHHHHHHHh
Q 041575 14 THRILGNMANKYGPIFTMKMG---VNRALVVSNSEITKECFT 52 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~---~~~~v~i~~p~~~~~i~~ 52 (263)
..+.+.++..+||+|..+.+. +.-+|-..+++.+..++.
T Consensus 44 te~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~ 85 (119)
T 2ad9_A 44 TEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVN 85 (119)
T ss_dssp CHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 356688899999999888764 346788889998888874
No 123
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=69.33 E-value=15 Score=21.79 Aligned_cols=48 Identities=15% Similarity=0.295 Sum_probs=34.6
Q ss_pred cccccccCCCCchhHHHHHHHhhcCCeEEEEec---------CeeEEEecCHHHHHHHHhh
Q 041575 2 IGHLHLFGGPEPTHRILGNMANKYGPIFTMKMG---------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 2 lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~~p~~~~~i~~~ 53 (263)
+||+.. .-..+.+.++..+||+|..+.+. +.-+|-..+++.+..++..
T Consensus 7 V~nLp~----~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 63 (96)
T 2x1f_A 7 LGSIPY----DQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRN 63 (96)
T ss_dssp EESCCT----TCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHH
T ss_pred EECCCC----CCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH
Confidence 456543 22356688888999999988873 2347888999999888843
No 124
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.13 E-value=13 Score=22.47 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=34.2
Q ss_pred hhHHHHHHHhhcCCeEEEEec---------CeeEEEecCHHHHHHHHhh-CCccccCC
Q 041575 14 THRILGNMANKYGPIFTMKMG---------VNRALVVSNSEITKECFTT-NDKALASR 61 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~~p~~~~~i~~~-~~~~~~~~ 61 (263)
..+.+.++..+||+|..+.+. +.-+|...+++.+..++.. +...+..+
T Consensus 26 t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2dnm_A 26 SPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGR 83 (103)
T ss_dssp CHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTB
T ss_pred CHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 356688888999999988873 2347888899998888853 44444333
No 125
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=69.00 E-value=9.6 Score=26.60 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=32.3
Q ss_pred chhHHHHHHHhhcCCeEEEEec--------CeeEEEecCHHHHHHHHhhC
Q 041575 13 PTHRILGNMANKYGPIFTMKMG--------VNRALVVSNSEITKECFTTN 54 (263)
Q Consensus 13 ~~~~~~~~~~~~yG~i~~~~~~--------~~~~v~i~~p~~~~~i~~~~ 54 (263)
-..+.+.++..+||+|..+.+. |.-+|...+++.+..++...
T Consensus 121 ~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~ 170 (193)
T 2voo_A 121 ATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP 170 (193)
T ss_dssp CCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT
T ss_pred CCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC
Confidence 3467788999999999887653 23578889999999988543
No 126
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=68.74 E-value=5.4 Score=24.79 Aligned_cols=47 Identities=15% Similarity=0.173 Sum_probs=32.9
Q ss_pred HHHH---HHHhhcCCeEEEEec------------CeeEEEecCHHHHHHHHhh-CCccccCCc
Q 041575 16 RILG---NMANKYGPIFTMKMG------------VNRALVVSNSEITKECFTT-NDKALASRP 62 (263)
Q Consensus 16 ~~~~---~~~~~yG~i~~~~~~------------~~~~v~i~~p~~~~~i~~~-~~~~~~~~~ 62 (263)
+.+. ++..+||+|..+.+. +.-+|...+++.+...+.. +...+..++
T Consensus 30 ~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 30 PEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp HHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred HHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 4455 788999999888763 2446788999999988865 444444333
No 127
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=68.50 E-value=16 Score=22.11 Aligned_cols=40 Identities=13% Similarity=0.124 Sum_probs=31.6
Q ss_pred hhHHHHHHHhhcCCeEEEEec-CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMG-VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~-~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+. +.-+|...+++.+...+..
T Consensus 24 t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~ 64 (103)
T 2dgu_A 24 TEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEE 64 (103)
T ss_dssp CHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHH
Confidence 356688888999999988874 3457888999999988854
No 128
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=68.39 E-value=13 Score=24.13 Aligned_cols=40 Identities=13% Similarity=0.192 Sum_probs=31.0
Q ss_pred hhHHHHHHHhhcCCeEEEEecC-----eeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMGV-----NRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~-----~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.+++.+||+|.++.+.. .-+|...+++.++.....
T Consensus 41 te~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~ 85 (130)
T 3zzy_A 41 TLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 85 (130)
T ss_dssp CHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHH
Confidence 3567889999999998887642 267888999888877743
No 129
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=68.24 E-value=17 Score=22.73 Aligned_cols=49 Identities=20% Similarity=0.236 Sum_probs=35.0
Q ss_pred hhHHHHHHHhhcCCeEEEEec--------CeeEEEecCHHHHHHHHhh-CCccccCCc
Q 041575 14 THRILGNMANKYGPIFTMKMG--------VNRALVVSNSEITKECFTT-NDKALASRP 62 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~--------~~~~v~i~~p~~~~~i~~~-~~~~~~~~~ 62 (263)
..+.+.++..+||+|..+.+. +.-+|...+++.++.++.. ++..+..+.
T Consensus 20 t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 77 (116)
T 2fy1_A 20 NEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKA 77 (116)
T ss_dssp CHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSB
T ss_pred CHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 356788888999999887763 2457888999999988854 344444443
No 130
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=68.09 E-value=23 Score=23.26 Aligned_cols=47 Identities=11% Similarity=0.154 Sum_probs=33.7
Q ss_pred hHHHHHHHhhcCCeEEEEec----CeeEEEecCHHHHHHHHhh-CCccccCC
Q 041575 15 HRILGNMANKYGPIFTMKMG----VNRALVVSNSEITKECFTT-NDKALASR 61 (263)
Q Consensus 15 ~~~~~~~~~~yG~i~~~~~~----~~~~v~i~~p~~~~~i~~~-~~~~~~~~ 61 (263)
.+.+.++..+||+|..+.+. +--+|-..+++.+...+.. ++..+..+
T Consensus 87 ~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 138 (150)
T 2i2y_A 87 KTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGC 138 (150)
T ss_dssp CHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSS
T ss_pred HHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 45678888899999988874 3457888999999888853 33333333
No 131
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=67.93 E-value=11 Score=23.78 Aligned_cols=45 Identities=9% Similarity=0.102 Sum_probs=32.2
Q ss_pred hhHHHHHHHhhcCCeEEEEecC---------eeEEEecCHHHHHHHHhhCCccc
Q 041575 14 THRILGNMANKYGPIFTMKMGV---------NRALVVSNSEITKECFTTNDKAL 58 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~~p~~~~~i~~~~~~~~ 58 (263)
..+.+.++..+||+|..+.+.. .-+|...+++.+...+.-++..+
T Consensus 49 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~ 102 (124)
T 2jwn_A 49 TAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVF 102 (124)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEE
T ss_pred CHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeE
Confidence 3566788889999998877621 34788899999998883233333
No 132
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=67.66 E-value=15 Score=21.18 Aligned_cols=40 Identities=15% Similarity=0.200 Sum_probs=30.7
Q ss_pred hhHHHHHHHhhcCCeEEEEec----------CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMG----------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~----------~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+. +.-+|...+++.+..++..
T Consensus 17 t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 66 (88)
T 4a8x_A 17 TKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKH 66 (88)
T ss_dssp CHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHH
Confidence 355678888999999887762 2347888999999988863
No 133
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=67.63 E-value=15 Score=22.57 Aligned_cols=50 Identities=14% Similarity=0.062 Sum_probs=33.9
Q ss_pred chhHHHHHHHhhcCCeEEEEecC----------eeEEEecCHHHHHHHHhh-CCccccCCc
Q 041575 13 PTHRILGNMANKYGPIFTMKMGV----------NRALVVSNSEITKECFTT-NDKALASRP 62 (263)
Q Consensus 13 ~~~~~~~~~~~~yG~i~~~~~~~----------~~~v~i~~p~~~~~i~~~-~~~~~~~~~ 62 (263)
+..+-+.+...+||+|..+++.. .-+|-..+++.+...... ++..|..|+
T Consensus 25 d~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 25 DLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp -CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred HHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 45677888889999998887631 235778898888877744 455554444
No 134
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.48 E-value=16 Score=22.32 Aligned_cols=40 Identities=13% Similarity=0.221 Sum_probs=31.3
Q ss_pred hhHHHHHHHhhcCCeEEEEec---CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMG---VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~---~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+. +.-+|...+++.+..++..
T Consensus 38 t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~ 80 (109)
T 1x4g_A 38 TDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVS 80 (109)
T ss_dssp CHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 356678888899999888874 4567888999999888743
No 135
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.14 E-value=9.1 Score=23.84 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=32.8
Q ss_pred hhHHHHHHHhhcCCeEEEEecC---------eeEEEecCHHHHHHHHhhCCccc
Q 041575 14 THRILGNMANKYGPIFTMKMGV---------NRALVVSNSEITKECFTTNDKAL 58 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~~p~~~~~i~~~~~~~~ 58 (263)
..+.+.++..+||+|..+.+.. .-+|...+++.+..++..+...+
T Consensus 40 te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~ 93 (116)
T 1x4b_A 40 TEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSI 93 (116)
T ss_dssp CHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEE
T ss_pred CHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEE
Confidence 3566888889999998877632 34688899999999986533333
No 136
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=67.11 E-value=14 Score=22.20 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=34.8
Q ss_pred cccccccCCCCchhHHHHHHHhhcCCeEEEEec----CeeEEEecCHHHHHHHHhh
Q 041575 2 IGHLHLFGGPEPTHRILGNMANKYGPIFTMKMG----VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 2 lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~----~~~~v~i~~p~~~~~i~~~ 53 (263)
+||++. .-..+.+.++..+||+|..+.+. +.-+|-..+++.+..++..
T Consensus 5 V~nLp~----~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~ 56 (101)
T 2hvz_A 5 VGNLGT----GAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRG 56 (101)
T ss_dssp EECCCS----SCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHH
T ss_pred EeCCCC----CCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHH
Confidence 566653 22356688888999999887763 3457888999999988853
No 137
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.08 E-value=16 Score=21.47 Aligned_cols=45 Identities=16% Similarity=0.256 Sum_probs=33.2
Q ss_pred hhHHHHHHHhhcCCeEEEEecC-eeEEEecCHHHHHHHHhh-CCccc
Q 041575 14 THRILGNMANKYGPIFTMKMGV-NRALVVSNSEITKECFTT-NDKAL 58 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~-~~~v~i~~p~~~~~i~~~-~~~~~ 58 (263)
..+.+.++..+||+|..+.+.. .-+|...+++.+...+.. +...+
T Consensus 23 t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~ 69 (92)
T 2dgt_A 23 TNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 69 (92)
T ss_dssp CHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEE
T ss_pred CHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCee
Confidence 4567888899999998887643 457788899999888853 33333
No 138
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=66.95 E-value=19 Score=22.02 Aligned_cols=40 Identities=13% Similarity=0.291 Sum_probs=31.0
Q ss_pred hhHHHHHHHhhcCCeEEEEec---------CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMG---------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+. +.-+|...+++.+..++..
T Consensus 28 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 76 (111)
T 1x4h_A 28 EEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 76 (111)
T ss_dssp CHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHH
Confidence 356678888999999988874 1346888899999988854
No 139
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=66.94 E-value=17 Score=24.72 Aligned_cols=40 Identities=13% Similarity=0.193 Sum_probs=31.2
Q ss_pred hhHHHHHHHhhcCCeEEEEec-----CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMG-----VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~-----~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.+++.+||+|.++++. +.-+|-..+++.+......
T Consensus 59 ted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~ 103 (164)
T 1sjr_A 59 TLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 103 (164)
T ss_dssp CHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHH
Confidence 356788899999999888873 2357888899988888754
No 140
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=66.80 E-value=14 Score=23.09 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=31.1
Q ss_pred hhHHHHHHHhhcC-CeEEEEec-----CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYG-PIFTMKMG-----VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG-~i~~~~~~-----~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+|| +|..+.+. +.-+|...+++.++..+..
T Consensus 41 te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~ 86 (111)
T 2jvr_A 41 SWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALER 86 (111)
T ss_dssp CHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHH
Confidence 4667888899999 78877763 3467888999999888854
No 141
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.78 E-value=18 Score=21.69 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=34.1
Q ss_pred hhHHHHHHHhhcCCeEEEEecC---------eeEEEecCHHHHHHHHhh-CCccccCCc
Q 041575 14 THRILGNMANKYGPIFTMKMGV---------NRALVVSNSEITKECFTT-NDKALASRP 62 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~~p~~~~~i~~~-~~~~~~~~~ 62 (263)
..+.+.++..+||+|..+.+.. .-+|...+++.+..++.. +...+..++
T Consensus 25 t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 1x5s_A 25 NEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQ 83 (102)
T ss_dssp CHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCC
T ss_pred CHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 3566888889999998887733 346788999999988843 333343333
No 142
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=66.50 E-value=15 Score=21.71 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=30.3
Q ss_pred hhHHHHHHHhhcCCeEEEEecC--------eeEEEecCHHHHHHHHh
Q 041575 14 THRILGNMANKYGPIFTMKMGV--------NRALVVSNSEITKECFT 52 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~--------~~~v~i~~p~~~~~i~~ 52 (263)
..+.+.++..+||+|..+.+.. .-+|...+++.++.++.
T Consensus 29 ~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~ 75 (95)
T 2ywk_A 29 REEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIA 75 (95)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHH
Confidence 3566888889999998887632 34778889999988885
No 143
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=66.46 E-value=18 Score=21.51 Aligned_cols=40 Identities=10% Similarity=0.114 Sum_probs=31.1
Q ss_pred hhHHHHHHHhhcCCeEEEEecC---eeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMGV---NRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~---~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+.. .-+|...+++.+..++..
T Consensus 30 t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~ 72 (97)
T 1why_A 30 SLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAK 72 (97)
T ss_dssp CHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 3566788889999999888743 357788899999888753
No 144
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.45 E-value=17 Score=21.24 Aligned_cols=40 Identities=10% Similarity=0.115 Sum_probs=31.3
Q ss_pred hhHHHHHHHhhcCCeEEEEecC-eeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMGV-NRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~-~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+.. .-+|...+++.+...+..
T Consensus 22 t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~ 62 (90)
T 2dnp_A 22 TSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQ 62 (90)
T ss_dssp CHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHH
Confidence 3566788889999999888743 457888999999888753
No 145
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.34 E-value=11 Score=23.33 Aligned_cols=45 Identities=9% Similarity=0.027 Sum_probs=31.8
Q ss_pred hhHHHHHHHhhcCCeEEEEec---------CeeEEEecCHHHHHHHHhhCCccc
Q 041575 14 THRILGNMANKYGPIFTMKMG---------VNRALVVSNSEITKECFTTNDKAL 58 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~~p~~~~~i~~~~~~~~ 58 (263)
..+.+.++..+||+|..+.+. +.-+|...+++.+..++.-+...+
T Consensus 38 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~ 91 (114)
T 2cq4_A 38 RPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRL 91 (114)
T ss_dssp CHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEE
T ss_pred CHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEe
Confidence 345688888999999988874 134677888888888873343333
No 146
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.31 E-value=16 Score=21.48 Aligned_cols=40 Identities=28% Similarity=0.291 Sum_probs=30.4
Q ss_pred hhHHHHHHHhhcCCeEEEEec------C---eeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMG------V---NRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~------~---~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+. . .-+|...+++.+..++..
T Consensus 28 t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (95)
T 2cqc_A 28 TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 76 (95)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 355688888999999888762 1 246788899999988854
No 147
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=66.27 E-value=15 Score=22.80 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=31.1
Q ss_pred hhHHHHHHHhhcCCeEEEEec---------CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMG---------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+. +--+|...+++.++..+..
T Consensus 19 te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~ 67 (110)
T 3s8s_A 19 RETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKN 67 (110)
T ss_dssp CHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 456788889999999888762 1247889999999988853
No 148
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=65.71 E-value=24 Score=22.60 Aligned_cols=39 Identities=26% Similarity=0.266 Sum_probs=30.6
Q ss_pred hHHHHHHHhhcCCeEEEEec---------CeeEEEecCHHHHHHHHhh
Q 041575 15 HRILGNMANKYGPIFTMKMG---------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 15 ~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~~p~~~~~i~~~ 53 (263)
.+.+.++..+||+|..+.+. +.-+|-..+++.++.++..
T Consensus 60 e~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ 107 (129)
T 2kxn_B 60 ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 107 (129)
T ss_dssp HHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 45688888999999888773 1347888999999988853
No 149
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=65.45 E-value=15 Score=21.15 Aligned_cols=40 Identities=10% Similarity=0.035 Sum_probs=30.3
Q ss_pred hhHHHHHHHhhcCCeEEEEecC---------eeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMGV---------NRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+.. .-+|-..+++.+...+..
T Consensus 19 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 67 (87)
T 3bs9_A 19 TTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 67 (87)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 3566888889999998877622 246788899999988853
No 150
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=65.28 E-value=16 Score=22.47 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=30.8
Q ss_pred hHHHHHHHhhcCCeEEEEe-cCeeEEEecCHHHHHHHHhh
Q 041575 15 HRILGNMANKYGPIFTMKM-GVNRALVVSNSEITKECFTT 53 (263)
Q Consensus 15 ~~~~~~~~~~yG~i~~~~~-~~~~~v~i~~p~~~~~i~~~ 53 (263)
.+.+.++..+||+|..+.+ -+.-+|...+++.+...+..
T Consensus 45 ~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~ 84 (108)
T 2jvo_A 45 ESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEE 84 (108)
T ss_dssp HHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHH
Confidence 5568888899999988776 34567888999999888753
No 151
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.27 E-value=18 Score=21.12 Aligned_cols=39 Identities=8% Similarity=0.233 Sum_probs=30.9
Q ss_pred hhHHHHHHHhhcCCeEEEEec-CeeEEEecCHHHHHHHHh
Q 041575 14 THRILGNMANKYGPIFTMKMG-VNRALVVSNSEITKECFT 52 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~-~~~~v~i~~p~~~~~i~~ 52 (263)
..+.+.++..+||+|..+.+. +.-+|-..+++.+..++.
T Consensus 21 t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~ 60 (90)
T 2dnq_A 21 TEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIR 60 (90)
T ss_dssp CHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHH
Confidence 356688889999999888763 355788899999988874
No 152
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=65.21 E-value=19 Score=21.39 Aligned_cols=47 Identities=11% Similarity=0.190 Sum_probs=34.4
Q ss_pred hHHHHHHHhhcCCeEEEEec-CeeEEEecCHHHHHHHHhh-CCccccCC
Q 041575 15 HRILGNMANKYGPIFTMKMG-VNRALVVSNSEITKECFTT-NDKALASR 61 (263)
Q Consensus 15 ~~~~~~~~~~yG~i~~~~~~-~~~~v~i~~p~~~~~i~~~-~~~~~~~~ 61 (263)
.+.+.++..+||+|..+.+. +.-+|...+++.+..++.. +...+..+
T Consensus 25 ~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 73 (96)
T 2kvi_A 25 KEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGK 73 (96)
T ss_dssp HHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTT
T ss_pred HHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 45678888999999888763 4567888999999988864 33334333
No 153
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.97 E-value=17 Score=21.39 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=31.0
Q ss_pred hhHHHHHHHhhcCCeEEEEecC---------eeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMGV---------NRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+.. .-+|...+++.+..++..
T Consensus 29 t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 77 (94)
T 2e5h_A 29 TNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 77 (94)
T ss_dssp CHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 3566888889999998887732 347888999999988843
No 154
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=64.88 E-value=7.4 Score=21.93 Aligned_cols=49 Identities=12% Similarity=0.097 Sum_probs=32.5
Q ss_pred cccccccCCCCchhHHHHHHHhhcCCeEEEEecC---------eeEEEecCHHHHHHHHhhC
Q 041575 2 IGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGV---------NRALVVSNSEITKECFTTN 54 (263)
Q Consensus 2 lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~~p~~~~~i~~~~ 54 (263)
+||++.- -..+.+.++..+||+|..+.+.. .-.|-..+++.+...+...
T Consensus 5 v~nlp~~----~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~ 62 (77)
T 1uaw_A 5 IGGLSWQ----TTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 62 (77)
T ss_dssp EESCCSS----CCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTT
T ss_pred EeCCCCC----CCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhC
Confidence 5666532 23456788888999987776522 2356677888888887543
No 155
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.86 E-value=19 Score=21.64 Aligned_cols=40 Identities=13% Similarity=0.207 Sum_probs=30.1
Q ss_pred hhHHHHHHHhhcCCeEEEEec---------CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMG---------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+. +.-+|...+++.+..++..
T Consensus 21 ~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 69 (104)
T 1p1t_A 21 TEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69 (104)
T ss_dssp CHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH
Confidence 356688888999998877663 2346788899999988853
No 156
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=64.74 E-value=22 Score=21.93 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=30.5
Q ss_pred hhHHHHHHHhhcCCeEEEEec------CeeEEEecCHHHHHHHHh
Q 041575 14 THRILGNMANKYGPIFTMKMG------VNRALVVSNSEITKECFT 52 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~------~~~~v~i~~p~~~~~i~~ 52 (263)
....+.++..+||+|..+.+. +.-+|...+++.+...+.
T Consensus 21 t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~ 65 (115)
T 3lqv_A 21 TAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVD 65 (115)
T ss_dssp CHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHH
Confidence 355688888999999988772 245788889998888875
No 157
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=64.26 E-value=16 Score=22.34 Aligned_cols=39 Identities=10% Similarity=0.082 Sum_probs=31.3
Q ss_pred hhHHHHHHHhhcCCeEEEEecC---eeEEEecCHHHHHHHHh
Q 041575 14 THRILGNMANKYGPIFTMKMGV---NRALVVSNSEITKECFT 52 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~---~~~v~i~~p~~~~~i~~ 52 (263)
..+.+.++...||.|..+++.. .-+|-..+++.+..+..
T Consensus 29 te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 70 (102)
T 1x4d_A 29 LRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVD 70 (102)
T ss_dssp HHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 3556888999999999988753 45888899999888875
No 158
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=64.09 E-value=22 Score=21.73 Aligned_cols=39 Identities=10% Similarity=0.045 Sum_probs=30.7
Q ss_pred hhHHHHHHHhhcCCeEEEEec---CeeEEEecCHHHHHHHHh
Q 041575 14 THRILGNMANKYGPIFTMKMG---VNRALVVSNSEITKECFT 52 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~---~~~~v~i~~p~~~~~i~~ 52 (263)
..+.+.++..+||+|..+.+. +.-+|-..+.+.+.....
T Consensus 34 te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~ 75 (100)
T 3r27_A 34 VEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVN 75 (100)
T ss_dssp CHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 345688899999999888763 456888889998888874
No 159
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.92 E-value=11 Score=23.24 Aligned_cols=40 Identities=15% Similarity=0.122 Sum_probs=30.3
Q ss_pred hhHHHHHHHhhcCCeEEEEec-------CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMG-------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~-------~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+. +.-+|...+++.++..+..
T Consensus 42 te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~ 88 (109)
T 2err_A 42 RDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK 88 (109)
T ss_dssp CHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHH
Confidence 356688889999999877763 3457788888888888753
No 160
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=63.86 E-value=7.3 Score=24.49 Aligned_cols=38 Identities=13% Similarity=0.117 Sum_probs=30.4
Q ss_pred hHHHHHHHhhcCCeEEEEec---CeeEEEecCHHHHHHHHh
Q 041575 15 HRILGNMANKYGPIFTMKMG---VNRALVVSNSEITKECFT 52 (263)
Q Consensus 15 ~~~~~~~~~~yG~i~~~~~~---~~~~v~i~~p~~~~~i~~ 52 (263)
...+.++..+||+|..+++. +.-+|-..+++.+...+.
T Consensus 40 e~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 80 (112)
T 1x4f_A 40 DSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVD 80 (112)
T ss_dssp SHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHH
Confidence 45688899999999988875 345788889998888875
No 161
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=63.60 E-value=15 Score=22.04 Aligned_cols=48 Identities=10% Similarity=0.120 Sum_probs=33.7
Q ss_pred hhHHHHHHHhhcCCeEEEEec---CeeEEEecCHHHHHHHHhh-CCccccCC
Q 041575 14 THRILGNMANKYGPIFTMKMG---VNRALVVSNSEITKECFTT-NDKALASR 61 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~---~~~~v~i~~p~~~~~i~~~-~~~~~~~~ 61 (263)
..+.+.++..+||+|..+.+. +.-+|...+++.+..++.. +...+..+
T Consensus 28 t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~ 79 (99)
T 2cpj_A 28 TEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGK 79 (99)
T ss_dssp CHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTB
T ss_pred CHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 356688889999999888774 3457778899988888743 33334333
No 162
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=63.46 E-value=15 Score=22.78 Aligned_cols=40 Identities=10% Similarity=0.005 Sum_probs=30.7
Q ss_pred hhHHHHHHHhhcCCeEEEEecC---------eeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMGV---------NRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+.. .-+|...+++.+..++..
T Consensus 28 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 76 (115)
T 2dgo_A 28 TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 76 (115)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 3566888889999998877632 347888999999998853
No 163
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=63.20 E-value=18 Score=24.32 Aligned_cols=40 Identities=8% Similarity=0.042 Sum_probs=30.9
Q ss_pred hhHHHHHHHhhcCCeEEEEec---------CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMG---------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~~p~~~~~i~~~ 53 (263)
....+.++..+||+|..+.+. +.-+|...+++.+..++..
T Consensus 85 t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 133 (165)
T 1rk8_A 85 QEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 133 (165)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHH
Confidence 456788889999999887763 2347888999999888853
No 164
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.98 E-value=23 Score=21.58 Aligned_cols=40 Identities=10% Similarity=0.145 Sum_probs=30.7
Q ss_pred hhHHHHHHHhhcCCeEEEEecC------eeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMGV------NRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~------~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+.. .-+|...+++.+..++..
T Consensus 35 t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~ 80 (109)
T 1x4a_A 35 RTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYG 80 (109)
T ss_dssp CHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHH
Confidence 3567888999999998877632 347888999999888843
No 165
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=62.90 E-value=23 Score=22.69 Aligned_cols=40 Identities=10% Similarity=0.092 Sum_probs=31.1
Q ss_pred hhHHHHHHHhhcCCeEEEEec---------CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMG---------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+. +.-+|...+++.++..+..
T Consensus 76 ~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 124 (140)
T 2ku7_A 76 DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 124 (140)
T ss_dssp CHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 346788888999999988872 2347888999999988853
No 166
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=62.90 E-value=18 Score=22.26 Aligned_cols=39 Identities=21% Similarity=0.310 Sum_probs=30.1
Q ss_pred hhHHHHHHHhhcCCeEEEEec---------CeeEEEecCHHHHHHHHh
Q 041575 14 THRILGNMANKYGPIFTMKMG---------VNRALVVSNSEITKECFT 52 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~~p~~~~~i~~ 52 (263)
..+.+.++..+||+|..+.+. +.-+|...+++.+..++.
T Consensus 39 te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~ 86 (108)
T 2jrs_A 39 TEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 86 (108)
T ss_dssp CHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHH
Confidence 355678888999999887763 234788899999998885
No 167
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.67 E-value=20 Score=21.56 Aligned_cols=40 Identities=15% Similarity=0.014 Sum_probs=30.2
Q ss_pred hhHHHHHHHhh-cCCeEEEEec--------CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANK-YGPIFTMKMG--------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~-yG~i~~~~~~--------~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+ ||+|..+.+. +.-+|...+++.+..++..
T Consensus 22 t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 70 (104)
T 2dhg_A 22 DDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTE 70 (104)
T ss_dssp CHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHH
Confidence 35567888888 9999887762 2347788999999998853
No 168
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.66 E-value=16 Score=21.86 Aligned_cols=40 Identities=8% Similarity=0.164 Sum_probs=30.1
Q ss_pred hhHHHHHHHhhcCCeE-EEEec---------CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIF-TMKMG---------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~-~~~~~---------~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|. .+.+. +.-+|-..+++.+...+..
T Consensus 22 t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 71 (99)
T 2div_A 22 DENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 71 (99)
T ss_dssp CHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHH
Confidence 3567788889999988 77652 1246788999999988853
No 169
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=62.13 E-value=23 Score=23.39 Aligned_cols=49 Identities=12% Similarity=0.180 Sum_probs=35.1
Q ss_pred hhHHHHHHHhhcCCeEEEEecC---------eeEEEecCHHHHHHHHhh-CCccccCCc
Q 041575 14 THRILGNMANKYGPIFTMKMGV---------NRALVVSNSEITKECFTT-NDKALASRP 62 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~~p~~~~~i~~~-~~~~~~~~~ 62 (263)
..+.+.++..+||+|..+.+.. .-+|...+++.+...+.. ++..+..++
T Consensus 83 ~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 141 (158)
T 2kn4_A 83 SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 141 (158)
T ss_dssp CHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSE
T ss_pred CHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 3566788889999999888743 247888999999999864 344444443
No 170
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.06 E-value=20 Score=21.59 Aligned_cols=39 Identities=10% Similarity=0.174 Sum_probs=30.2
Q ss_pred hhHHHHHHHhhcCCeEEEEecC---------eeEEEecCHHHHHHHHh
Q 041575 14 THRILGNMANKYGPIFTMKMGV---------NRALVVSNSEITKECFT 52 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~~p~~~~~i~~ 52 (263)
..+.+.++..+||+|..+.+.. .-+|...+++.+..++.
T Consensus 28 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 75 (103)
T 2cqg_A 28 TEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS 75 (103)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH
Confidence 3566888889999998877621 24678899999999985
No 171
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=61.94 E-value=25 Score=22.66 Aligned_cols=40 Identities=10% Similarity=0.134 Sum_probs=31.6
Q ss_pred hhHHHHHHHhhcCCeEEEEecC---------eeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMGV---------NRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+.. .-+|...+++.+..++..
T Consensus 60 te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~ 108 (135)
T 2lea_A 60 SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 108 (135)
T ss_dssp HHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTT
T ss_pred CHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 4567888889999998888732 247889999999998853
No 172
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=61.87 E-value=11 Score=23.32 Aligned_cols=40 Identities=13% Similarity=0.114 Sum_probs=30.1
Q ss_pred hhHHHHHHHhhcCCeEEEEecC---------eeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMGV---------NRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+.. .-+|...+++.++.++..
T Consensus 38 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 86 (115)
T 2cpz_A 38 GDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 86 (115)
T ss_dssp CHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHH
Confidence 3567888889999998776521 246788999999988854
No 173
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.77 E-value=14 Score=21.33 Aligned_cols=39 Identities=18% Similarity=0.224 Sum_probs=29.6
Q ss_pred hhHHHHHHHhhcCCeEEEEecC---------eeEEEecCHHHHHHHHh
Q 041575 14 THRILGNMANKYGPIFTMKMGV---------NRALVVSNSEITKECFT 52 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~~p~~~~~i~~ 52 (263)
..+.+.++..+||+|..+.+.. --+|...+++.+..++.
T Consensus 18 t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (85)
T 1x4e_A 18 TDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT 65 (85)
T ss_dssp CHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 3556788888999998887532 24688899999888874
No 174
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.71 E-value=24 Score=21.42 Aligned_cols=40 Identities=3% Similarity=-0.141 Sum_probs=31.1
Q ss_pred hhHHHHHHHhhcCC-eEEEEec----------CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGP-IFTMKMG----------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~-i~~~~~~----------~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+ |..+.+. +.-+|-..+++.+...+..
T Consensus 21 t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 71 (109)
T 2dis_A 21 KREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRK 71 (109)
T ss_dssp CHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTT
T ss_pred CHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHH
Confidence 35677888899998 9888774 2347888999999998854
No 175
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=61.67 E-value=17 Score=29.28 Aligned_cols=40 Identities=18% Similarity=0.180 Sum_probs=31.1
Q ss_pred hhHHHHHHHhhcCCeEEEEec---------CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMG---------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~~p~~~~~i~~~ 53 (263)
....+.+++.+||+|..+.+. +.-+|.+.+++.+..++..
T Consensus 115 te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 163 (437)
T 3pgw_S 115 TESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163 (437)
T ss_pred CHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHH
Confidence 356788888999999888763 2357888999999988854
No 176
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.63 E-value=8.9 Score=23.23 Aligned_cols=40 Identities=10% Similarity=0.107 Sum_probs=30.5
Q ss_pred hhHHHHHHHhhcCCeEEEEecC---------eeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMGV---------NRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+.. .-+|...+++.+..++..
T Consensus 28 t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (103)
T 2cq0_A 28 RETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 76 (103)
T ss_dssp CHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 3456788889999998887632 247888999999988853
No 177
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=61.43 E-value=16 Score=22.27 Aligned_cols=40 Identities=13% Similarity=0.039 Sum_probs=32.4
Q ss_pred chhHHHHHHHhhcCCeEEEEecC-eeEEEecCHHHHHHHHh
Q 041575 13 PTHRILGNMANKYGPIFTMKMGV-NRALVVSNSEITKECFT 52 (263)
Q Consensus 13 ~~~~~~~~~~~~yG~i~~~~~~~-~~~v~i~~p~~~~~i~~ 52 (263)
.-..-+.++.+.||.|.--|+.. .-.+++.+|+.+++++.
T Consensus 27 wKt~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 27 WKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CCHHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHH
T ss_pred hhhHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHH
Confidence 34567888999999887777754 45789999999999986
No 178
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.25 E-value=9.2 Score=22.35 Aligned_cols=46 Identities=13% Similarity=0.241 Sum_probs=33.2
Q ss_pred cccccccCCCCchhHHHHHHHhhcCCeEEEEec----CeeEEEecCHHHHHHHH
Q 041575 2 IGHLHLFGGPEPTHRILGNMANKYGPIFTMKMG----VNRALVVSNSEITKECF 51 (263)
Q Consensus 2 lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~----~~~~v~i~~p~~~~~i~ 51 (263)
+||++. .-..+.+.++..+||+|..+.+. +--+|...+++.++.+.
T Consensus 10 V~nLp~----~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~ 59 (88)
T 1wf0_A 10 VGRCTG----DMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLC 59 (88)
T ss_dssp EESCCS----SSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTT
T ss_pred EeCCCC----CCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHh
Confidence 455543 22356788888999999988874 34578889999987654
No 179
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=61.08 E-value=21 Score=21.62 Aligned_cols=40 Identities=13% Similarity=0.193 Sum_probs=30.8
Q ss_pred hhHHHHHHHhhcCCeEEEEecC---------eeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMGV---------NRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+.. .-+|...+++.+..++..
T Consensus 26 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 74 (106)
T 2dgp_A 26 DEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 74 (106)
T ss_dssp CHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 3567888899999998888732 347788899999888753
No 180
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=59.84 E-value=21 Score=24.39 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=35.5
Q ss_pred cccccccCCCCchhHHHHHHHhhcCCeEEEEec---------CeeEEEecCHHHHHHHHhhCC
Q 041575 2 IGHLHLFGGPEPTHRILGNMANKYGPIFTMKMG---------VNRALVVSNSEITKECFTTND 55 (263)
Q Consensus 2 lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~~p~~~~~i~~~~~ 55 (263)
+|||+. .-..+.+.++..+||+|..+.+. +.-+|...+++.+...+..+.
T Consensus 18 V~nLp~----~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 76 (196)
T 1l3k_A 18 IGGLSF----ETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARP 76 (196)
T ss_dssp EESCCT----TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCS
T ss_pred EeCCCC----CCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCC
Confidence 455543 22356788899999999877652 134788999999999986543
No 181
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.14 E-value=11 Score=22.64 Aligned_cols=40 Identities=10% Similarity=0.135 Sum_probs=30.4
Q ss_pred hhHHHHHHHhhcCCeEEEEecC---------eeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMGV---------NRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+.. .-+|...+++.+..++..
T Consensus 25 t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 2cqb_A 25 DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 73 (102)
T ss_dssp CHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHH
T ss_pred CHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 3567888889999998887622 246778899999888853
No 182
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=58.90 E-value=29 Score=21.87 Aligned_cols=52 Identities=13% Similarity=0.129 Sum_probs=35.7
Q ss_pred CchhHHHHHHHhhcCCeEEEEecC-------------eeEEEecCHHHHHHHHhh-CCccccCCcc
Q 041575 12 EPTHRILGNMANKYGPIFTMKMGV-------------NRALVVSNSEITKECFTT-NDKALASRPR 63 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~~~-------------~~~v~i~~p~~~~~i~~~-~~~~~~~~~~ 63 (263)
.+..+-+.+...+||+|..+.+.. .-+|-..+++.+...... ++..|..|+.
T Consensus 36 ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i 101 (118)
T 3ue2_A 36 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKV 101 (118)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred HHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 456677888888999998887632 235677799888877654 4555655543
No 183
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.59 E-value=25 Score=20.62 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=34.8
Q ss_pred hhHHHHHHHhhcCCeEEEEecC---------eeEEEecCHHHHHHHHhh-CCccccCCc
Q 041575 14 THRILGNMANKYGPIFTMKMGV---------NRALVVSNSEITKECFTT-NDKALASRP 62 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~~p~~~~~i~~~-~~~~~~~~~ 62 (263)
..+.+.++..+||+|..+.+.. .-+|...+++.+..++.. +...+..++
T Consensus 18 t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (95)
T 2dnz_A 18 TEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRP 76 (95)
T ss_dssp CHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 3566888889999998887632 347888999999988853 344444443
No 184
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.28 E-value=22 Score=21.82 Aligned_cols=40 Identities=8% Similarity=0.022 Sum_probs=30.4
Q ss_pred hhHHHHHHHhhcCCeEEEEecC--------eeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMGV--------NRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~--------~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+.. .-+|...+++.+...+..
T Consensus 28 ~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 75 (114)
T 2do0_A 28 GWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISM 75 (114)
T ss_dssp CHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 3567888899999998776632 346788899999888753
No 185
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=57.77 E-value=25 Score=22.63 Aligned_cols=47 Identities=15% Similarity=0.245 Sum_probs=33.2
Q ss_pred hHHHHHHHhhcCCeEEEEec---------CeeEEEecCHHHHHHHHhh-CCccccCC
Q 041575 15 HRILGNMANKYGPIFTMKMG---------VNRALVVSNSEITKECFTT-NDKALASR 61 (263)
Q Consensus 15 ~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~~p~~~~~i~~~-~~~~~~~~ 61 (263)
.+.+.++..+||+|..+.+. +.-+|...+++.+..++.. +...+..+
T Consensus 56 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 112 (139)
T 1u6f_A 56 EVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK 112 (139)
T ss_dssp HHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC
T ss_pred HHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 45688888999999887762 1246888999999988864 33334333
No 186
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=57.61 E-value=13 Score=22.76 Aligned_cols=41 Identities=17% Similarity=0.081 Sum_probs=33.0
Q ss_pred CchhHHHHHHHhhcCCeEEEEecC-eeEEEecCHHHHHHHHh
Q 041575 12 EPTHRILGNMANKYGPIFTMKMGV-NRALVVSNSEITKECFT 52 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~~~-~~~v~i~~p~~~~~i~~ 52 (263)
..-..-+.++.+.||.|.--|+.. .-.+++++|+.+++++.
T Consensus 16 ewKt~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 16 EWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp TCCHHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred hhhhHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHH
Confidence 344567888999999887777755 45789999999999996
No 187
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=57.34 E-value=27 Score=22.34 Aligned_cols=40 Identities=10% Similarity=0.056 Sum_probs=30.0
Q ss_pred hhHHHHHHHhhcCCeEEEEec---C-eeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMG---V-NRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~---~-~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||.|..+++. + .-+|-..+++.+......
T Consensus 38 t~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~ 81 (124)
T 2e5i_A 38 TVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAA 81 (124)
T ss_dssp CHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 356789999999999877663 3 367888898877776643
No 188
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=57.23 E-value=26 Score=23.35 Aligned_cols=40 Identities=15% Similarity=0.217 Sum_probs=30.8
Q ss_pred hhHHHHHHHhhcC--CeEEEEec-----C----eeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYG--PIFTMKMG-----V----NRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG--~i~~~~~~-----~----~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+|| +|..+.+. + --+|...+++.+..++..
T Consensus 68 te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~ 118 (156)
T 3n9u_C 68 TDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLEL 118 (156)
T ss_dssp CHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 3567888889999 88888762 1 247888999999988865
No 189
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=56.85 E-value=44 Score=23.20 Aligned_cols=39 Identities=13% Similarity=0.161 Sum_probs=31.1
Q ss_pred hhHHHHHHHhhcCCeEEEEec---------CeeEEEecCHHHHHHHHh
Q 041575 14 THRILGNMANKYGPIFTMKMG---------VNRALVVSNSEITKECFT 52 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~~p~~~~~i~~ 52 (263)
..+.+.++.++||+|..+.+. +.-+|...+++.+...+.
T Consensus 41 t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 88 (216)
T 2qfj_A 41 GEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 88 (216)
T ss_dssp CHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHH
Confidence 356788889999999888772 235788999999999885
No 190
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.79 E-value=34 Score=21.50 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=31.6
Q ss_pred hhHHHHHHHhhcCCeEEEEecC---eeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMGV---NRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~---~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.+...+||.|..+.+.. --+|-..+++.+++.+..
T Consensus 40 te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~ 82 (114)
T 2cq2_A 40 SRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVT 82 (114)
T ss_dssp CHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 3467889999999999888742 357888899988888754
No 191
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.23 E-value=31 Score=20.95 Aligned_cols=40 Identities=10% Similarity=0.267 Sum_probs=32.1
Q ss_pred hhHHHHHHHhhcCCeEEEEec----CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMG----VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~----~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+. +--+|...+++.+...+..
T Consensus 30 te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~ 73 (100)
T 2d9o_A 30 SKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQN 73 (100)
T ss_dssp CHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHh
Confidence 357789999999999988874 2357888999999888854
No 192
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=56.19 E-value=11 Score=22.73 Aligned_cols=39 Identities=10% Similarity=0.091 Sum_probs=29.4
Q ss_pred hhHHHHHHHhhcCCeEEEEec--------CeeEEEecCHHHHHHHHh
Q 041575 14 THRILGNMANKYGPIFTMKMG--------VNRALVVSNSEITKECFT 52 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~--------~~~~v~i~~p~~~~~i~~ 52 (263)
..+.+.++..+||+|..+.+. +.-+|...+++.+..++.
T Consensus 22 t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 22 DETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT
T ss_pred CHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh
Confidence 356678888999999887762 234677788888888885
No 193
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=55.88 E-value=20 Score=22.23 Aligned_cols=39 Identities=10% Similarity=0.140 Sum_probs=30.1
Q ss_pred hHHHHHHHhhcCCeEEEEecC---------eeEEEecCHHHHHHHHhh
Q 041575 15 HRILGNMANKYGPIFTMKMGV---------NRALVVSNSEITKECFTT 53 (263)
Q Consensus 15 ~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~~p~~~~~i~~~ 53 (263)
.+.+.++..+||+|..+.+.. .-+|...+++.++..+..
T Consensus 54 ~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 101 (118)
T 2khc_A 54 DTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA 101 (118)
T ss_dssp HHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 567888889999998887732 246788899998888854
No 194
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=55.74 E-value=24 Score=21.58 Aligned_cols=40 Identities=13% Similarity=0.107 Sum_probs=30.6
Q ss_pred hhHHHHHHHhhcCCeEEEEec-CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMG-VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~-~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+. +.-+|...+++.+..++..
T Consensus 41 t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~ 81 (110)
T 1wf1_A 41 KKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLG 81 (110)
T ss_dssp CHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHH
Confidence 356788889999999887762 3457788899988888743
No 195
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=55.43 E-value=27 Score=20.89 Aligned_cols=40 Identities=18% Similarity=0.142 Sum_probs=29.4
Q ss_pred hhHHHHHHHhhcCCeEEEEec---CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMG---VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~---~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+. +.-+|...+++.+...+..
T Consensus 40 ~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 82 (101)
T 2la4_A 40 TEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVA 82 (101)
T ss_dssp CHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHH
Confidence 356678888899999888764 3456777888888877743
No 196
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.93 E-value=30 Score=20.34 Aligned_cols=39 Identities=10% Similarity=0.193 Sum_probs=29.6
Q ss_pred hhHHHHHHHhhcCCeEEEEecC----eeEEEecCHHHHHHHHh
Q 041575 14 THRILGNMANKYGPIFTMKMGV----NRALVVSNSEITKECFT 52 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~----~~~v~i~~p~~~~~i~~ 52 (263)
..+.+.++..+||+|..+..-. --+|-..+++.+..++.
T Consensus 21 t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~ 63 (94)
T 2e5g_A 21 DSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS 63 (94)
T ss_dssp CHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh
Confidence 4567888899999998874321 34677889999999886
No 197
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=54.92 E-value=31 Score=20.45 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=31.6
Q ss_pred hhHHHHHHHhhcCCeEEEEec---CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMG---VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~---~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.++ +.-+|...+++.+...+..
T Consensus 26 t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~ 68 (97)
T 1x5p_A 26 TPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE 68 (97)
T ss_dssp CHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHH
Confidence 356788889999999988875 3457788899999988854
No 198
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=54.87 E-value=21 Score=23.64 Aligned_cols=46 Identities=4% Similarity=0.111 Sum_probs=33.0
Q ss_pred hhHHHHHHHhhcCCeEEEEecC---------eeEEEecCHHHHHHHHhhCCcccc
Q 041575 14 THRILGNMANKYGPIFTMKMGV---------NRALVVSNSEITKECFTTNDKALA 59 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~~p~~~~~i~~~~~~~~~ 59 (263)
..+.+.++..+||+|..+.+.. .-+|-..+++.+..++..+...+.
T Consensus 100 t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~ 154 (167)
T 2cjk_A 100 RPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFK 154 (167)
T ss_dssp CHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSS
T ss_pred CHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeC
Confidence 3556788888999998887632 346888999999999864333333
No 199
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=54.03 E-value=24 Score=23.33 Aligned_cols=40 Identities=15% Similarity=0.064 Sum_probs=31.3
Q ss_pred hhHHHHHHHhhcCCeEEEEec---------CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMG---------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+. +.-+|...+++.+..++..
T Consensus 52 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 100 (156)
T 1h2v_Z 52 TEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100 (156)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 356788899999999888772 1237888999999998864
No 200
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=53.97 E-value=31 Score=24.24 Aligned_cols=47 Identities=13% Similarity=0.114 Sum_probs=34.5
Q ss_pred hHHHHHHHhhcCCeEEEEec----CeeEEEecCHHHHHHHHhh-CCccccCC
Q 041575 15 HRILGNMANKYGPIFTMKMG----VNRALVVSNSEITKECFTT-NDKALASR 61 (263)
Q Consensus 15 ~~~~~~~~~~yG~i~~~~~~----~~~~v~i~~p~~~~~i~~~-~~~~~~~~ 61 (263)
.+.+.++..+||+|..+.+. +.-+|...+++.+...+.. ++..+..+
T Consensus 19 ~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 70 (205)
T 3tyt_A 19 CDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQ 70 (205)
T ss_dssp HHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred HHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 45788889999999999874 3568999999999888753 33333333
No 201
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=52.75 E-value=25 Score=24.06 Aligned_cols=45 Identities=9% Similarity=0.156 Sum_probs=32.7
Q ss_pred hhHHHHHHHhhcCCeEEEEecC---------eeEEEecCHHHHHHHHhhCCccc
Q 041575 14 THRILGNMANKYGPIFTMKMGV---------NRALVVSNSEITKECFTTNDKAL 58 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~~p~~~~~i~~~~~~~~ 58 (263)
..+.+.++..+||+|..+.+.. .-+|-..+++.+..++..+...+
T Consensus 117 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~ 170 (196)
T 1l3k_A 117 EEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTV 170 (196)
T ss_dssp CHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEE
T ss_pred CHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEE
Confidence 3566888889999998876631 24788899999999886543333
No 202
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=52.44 E-value=25 Score=23.12 Aligned_cols=47 Identities=21% Similarity=0.195 Sum_probs=34.3
Q ss_pred cccccccCCCCchhHHHHHHHhhcCCeEEEEec--------CeeEEEecCHHHHHHHHh
Q 041575 2 IGHLHLFGGPEPTHRILGNMANKYGPIFTMKMG--------VNRALVVSNSEITKECFT 52 (263)
Q Consensus 2 lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~v~i~~p~~~~~i~~ 52 (263)
+||++. .-..+.+.++.++||+|..+.+. +.-.|...+++.+...+.
T Consensus 5 V~nlp~----~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~ 59 (166)
T 3md3_A 5 VGNLDK----AITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQ 59 (166)
T ss_dssp EEEEET----TCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHH
T ss_pred ECCCCC----cCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHH
Confidence 456653 22356788889999999888762 235788899999998884
No 203
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.12 E-value=34 Score=20.12 Aligned_cols=39 Identities=10% Similarity=0.274 Sum_probs=29.3
Q ss_pred hhHHHHHHHhhcCCeEEEE-ecC-----eeEEEecCHHHHHHHHh
Q 041575 14 THRILGNMANKYGPIFTMK-MGV-----NRALVVSNSEITKECFT 52 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~-~~~-----~~~v~i~~p~~~~~i~~ 52 (263)
..+.+.++..+||+|..+. +.. .-+|...+++.+...+.
T Consensus 28 t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~ 72 (96)
T 2e44_A 28 QWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALD 72 (96)
T ss_dssp CHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHH
Confidence 3566888889999998883 422 25788899998888875
No 204
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.43 E-value=36 Score=20.15 Aligned_cols=40 Identities=10% Similarity=0.080 Sum_probs=27.8
Q ss_pred hhHHHHHHHhhcCCeE-EEEec---CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIF-TMKMG---VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~-~~~~~---~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|. .+..+ +.-+|...+++.+...+..
T Consensus 32 t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 75 (97)
T 2e5j_A 32 RVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSC 75 (97)
T ss_dssp CHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHH
T ss_pred cHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHH
Confidence 3567888889999873 33222 3457788899988888744
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=51.32 E-value=31 Score=21.61 Aligned_cols=48 Identities=10% Similarity=0.070 Sum_probs=32.5
Q ss_pred hHHHHHHHhhcCCeEEEEec-----CeeEEEecCHHHHHHHHhh-CCccccCCc
Q 041575 15 HRILGNMANKYGPIFTMKMG-----VNRALVVSNSEITKECFTT-NDKALASRP 62 (263)
Q Consensus 15 ~~~~~~~~~~yG~i~~~~~~-----~~~~v~i~~p~~~~~i~~~-~~~~~~~~~ 62 (263)
.+-+.+...+||+|..+.+. |.-+|-..+++.+...... ++..|..|.
T Consensus 31 ~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 31 KDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp HHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred HHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34556677899999888873 3447778888888877644 455554444
No 206
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=50.76 E-value=41 Score=22.15 Aligned_cols=47 Identities=17% Similarity=0.135 Sum_probs=34.4
Q ss_pred cccccccCCCCchhHHHHHHHhhcCCeEEEEec---------CeeEEEecCHHHHHHHHh
Q 041575 2 IGHLHLFGGPEPTHRILGNMANKYGPIFTMKMG---------VNRALVVSNSEITKECFT 52 (263)
Q Consensus 2 lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~~p~~~~~i~~ 52 (263)
+||++. .-..+.+.++.++||+|..+.+. +.-+|...+++.++..+.
T Consensus 8 v~nlp~----~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 63 (168)
T 1b7f_A 8 VNYLPQ----DMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIK 63 (168)
T ss_dssp EECCCT----TCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHH
T ss_pred EeCCCC----CCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHH
Confidence 455543 22355688888999999888763 235788899999998885
No 207
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.42 E-value=20 Score=21.13 Aligned_cols=40 Identities=10% Similarity=0.180 Sum_probs=30.0
Q ss_pred hhHHHHHHHhhcCCeEEE-Eec---------CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTM-KMG---------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~-~~~---------~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+ .+. +.-+|...+++.++.++..
T Consensus 18 t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 67 (96)
T 1x5t_A 18 DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 67 (96)
T ss_dssp CHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHH
Confidence 356788888999998666 542 2347888999999999853
No 208
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=50.37 E-value=24 Score=20.60 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=31.4
Q ss_pred cccccccCCCCchhHHHHHHHhhcC--CeEEEEecC---------eeEEEecCHHHHHHHHh
Q 041575 2 IGHLHLFGGPEPTHRILGNMANKYG--PIFTMKMGV---------NRALVVSNSEITKECFT 52 (263)
Q Consensus 2 lG~~~~~~~~~~~~~~~~~~~~~yG--~i~~~~~~~---------~~~v~i~~p~~~~~i~~ 52 (263)
+||+..- -..+.+.++..+|| +|..+.+.. --+|...+++.++..+.
T Consensus 6 V~nL~~~----~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~ 63 (90)
T 3p5t_L 6 IGNLTWW----TTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMD 63 (90)
T ss_dssp EESCCTT----CCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHH
T ss_pred EeCCCCC----CCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHH
Confidence 5666532 23567788889999 887766521 24677889998888874
No 209
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.04 E-value=16 Score=22.66 Aligned_cols=45 Identities=9% Similarity=-0.065 Sum_probs=31.1
Q ss_pred hhHHHHHHHhhcCCe-EEEEe--------cCeeEEEecCHHHHHHHHhhCCccc
Q 041575 14 THRILGNMANKYGPI-FTMKM--------GVNRALVVSNSEITKECFTTNDKAL 58 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i-~~~~~--------~~~~~v~i~~p~~~~~i~~~~~~~~ 58 (263)
..+.+.++..+||.| ..+.+ -+.-+|...+++.+...+..+...+
T Consensus 28 t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~ 81 (114)
T 2cpy_A 28 TKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKL 81 (114)
T ss_dssp CHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEE
T ss_pred CHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCcc
Confidence 355688888999988 33333 1345788999999999986543333
No 210
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=50.02 E-value=53 Score=22.36 Aligned_cols=40 Identities=3% Similarity=0.071 Sum_probs=31.0
Q ss_pred hhHHHHHHHhhcCCeEEEEec--------CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMG--------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~--------~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+. +.-+|...+++.+..++..
T Consensus 101 te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~ 148 (177)
T 2f3j_A 101 SDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQ 148 (177)
T ss_dssp CHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHH
Confidence 356688888999999888773 2347888999999988853
No 211
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=50.01 E-value=31 Score=25.57 Aligned_cols=49 Identities=10% Similarity=0.148 Sum_probs=35.4
Q ss_pred hhHHHHHHHhhcCCeEEEEec-------CeeEEEecCHHHHHHHHhhCCccccCCc
Q 041575 14 THRILGNMANKYGPIFTMKMG-------VNRALVVSNSEITKECFTTNDKALASRP 62 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~-------~~~~v~i~~p~~~~~i~~~~~~~~~~~~ 62 (263)
..+.+.++...||+|..+.+. +.-+|...+++.+...+..+...+..++
T Consensus 54 t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~ 109 (292)
T 2ghp_A 54 NQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNE 109 (292)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEE
T ss_pred CHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcE
Confidence 356788889999999887762 3457889999999999854444444443
No 212
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=49.94 E-value=36 Score=23.85 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=34.4
Q ss_pred cccccccCCCCchhHHHHHHHhhcCCeEEEEec---------CeeEEEecCHHHHHHHHhh
Q 041575 2 IGHLHLFGGPEPTHRILGNMANKYGPIFTMKMG---------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 2 lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~~p~~~~~i~~~ 53 (263)
+|||+. .-..+.+.++.++||+|..+.+. +.-+|...+++.+...+..
T Consensus 20 VgnLp~----~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ 76 (213)
T 4f02_A 20 VGDLHP----DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76 (213)
T ss_dssp EESCCT----TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EeCCCC----CCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHH
Confidence 455542 22356788889999999887762 1347888999999988754
No 213
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=49.94 E-value=45 Score=20.86 Aligned_cols=47 Identities=6% Similarity=0.109 Sum_probs=33.2
Q ss_pred hHHHHHHHhhcCCeEEEEec--------CeeEEEecCHHHHHHHHhh-CCccccCC
Q 041575 15 HRILGNMANKYGPIFTMKMG--------VNRALVVSNSEITKECFTT-NDKALASR 61 (263)
Q Consensus 15 ~~~~~~~~~~yG~i~~~~~~--------~~~~v~i~~p~~~~~i~~~-~~~~~~~~ 61 (263)
.+.+.++..+||+|..+.+. +.-+|...+++.++..+.. +...+..+
T Consensus 49 ~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 104 (124)
T 2kt5_A 49 DADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGR 104 (124)
T ss_dssp HHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSC
T ss_pred HHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 45678888999999887763 2457888999999888853 33344333
No 214
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=48.84 E-value=38 Score=22.48 Aligned_cols=40 Identities=10% Similarity=0.144 Sum_probs=30.6
Q ss_pred hhHHHHHHHhhcCCeEEEEecC--------eeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMGV--------NRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~--------~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+.. --+|-..+++.+...+..
T Consensus 108 t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 108 TENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHH
Confidence 3566888889999998877632 147888999999988854
No 215
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.57 E-value=19 Score=22.91 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=28.6
Q ss_pred hhHHHHHHHhhcCCe----EEEEe-----c---CeeEEEecCHHHHHHHHhhC
Q 041575 14 THRILGNMANKYGPI----FTMKM-----G---VNRALVVSNSEITKECFTTN 54 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i----~~~~~-----~---~~~~v~i~~p~~~~~i~~~~ 54 (263)
..+.+.++.++||+| ..+.+ + +.-+|.+.+++.++..+..+
T Consensus 36 te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~ 88 (123)
T 2dha_A 36 TAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKH 88 (123)
T ss_dssp CHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTT
T ss_pred CHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhC
Confidence 456788889999975 23332 1 23478889999999998653
No 216
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=48.40 E-value=41 Score=20.04 Aligned_cols=43 Identities=7% Similarity=0.080 Sum_probs=30.2
Q ss_pred hHHHHHHHhhcCCeEEEEecC----------eeEEEecCHHHHHHHHhhCCccc
Q 041575 15 HRILGNMANKYGPIFTMKMGV----------NRALVVSNSEITKECFTTNDKAL 58 (263)
Q Consensus 15 ~~~~~~~~~~yG~i~~~~~~~----------~~~v~i~~p~~~~~i~~~~~~~~ 58 (263)
.+.+.++..+|| |..+.+.. --+|...+++.+...+.-++..+
T Consensus 33 ~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~ 85 (100)
T 2j76_E 33 EESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESL 85 (100)
T ss_dssp SSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCB
T ss_pred HHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEE
Confidence 446778888999 98887632 34688899999998883333333
No 217
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=48.18 E-value=30 Score=22.77 Aligned_cols=40 Identities=13% Similarity=0.080 Sum_probs=30.8
Q ss_pred hhHHHHHHHhhcCCeEEEEec---------CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMG---------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+. +.-+|...+++.+...+..
T Consensus 15 ~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 63 (167)
T 1fxl_A 15 TQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63 (167)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHH
Confidence 356678888999999887762 2347888999999998853
No 218
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.27 E-value=34 Score=20.97 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=30.2
Q ss_pred hhHHHHHHHhhcCCeEEEEecC--------eeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMGV--------NRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~--------~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+.. .-+|...+++.+...+..
T Consensus 38 t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 85 (114)
T 1x5o_A 38 DEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGH 85 (114)
T ss_dssp CHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHH
Confidence 3556888889999998877632 246778899999888853
No 219
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=46.60 E-value=29 Score=20.09 Aligned_cols=38 Identities=11% Similarity=0.256 Sum_probs=27.1
Q ss_pred hHHHHHHHhhcCCeEEEEecC---------eeEEEecCHHHHHHHHhh
Q 041575 15 HRILGNMANKYGPIFTMKMGV---------NRALVVSNSEITKECFTT 53 (263)
Q Consensus 15 ~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~~p~~~~~i~~~ 53 (263)
.+.+.++..+||+|..+.+.. --+|...+++ +...+..
T Consensus 15 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~ 61 (90)
T 2ki2_A 15 SEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAK 61 (90)
T ss_dssp HHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHT
T ss_pred HHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHH
Confidence 456777888899998887631 2467888888 6666643
No 220
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.50 E-value=44 Score=19.79 Aligned_cols=39 Identities=18% Similarity=0.130 Sum_probs=30.8
Q ss_pred hhHHHHHHHhhc--CCeEEEEec-CeeEEEecCHHHHHHHHh
Q 041575 14 THRILGNMANKY--GPIFTMKMG-VNRALVVSNSEITKECFT 52 (263)
Q Consensus 14 ~~~~~~~~~~~y--G~i~~~~~~-~~~~v~i~~p~~~~~i~~ 52 (263)
..+.+.++..+| |.|..+.+. +.-+|...+++.+...+.
T Consensus 28 t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~ 69 (99)
T 2cpd_A 28 SEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMK 69 (99)
T ss_dssp CHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHH
Confidence 356788889999 889888763 355788899999998885
No 221
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=45.70 E-value=44 Score=20.99 Aligned_cols=39 Identities=13% Similarity=0.210 Sum_probs=30.0
Q ss_pred hHHHHHHHhhcCCeEEEEec---CeeEEEecCHHHHHHHHhh
Q 041575 15 HRILGNMANKYGPIFTMKMG---VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 15 ~~~~~~~~~~yG~i~~~~~~---~~~~v~i~~p~~~~~i~~~ 53 (263)
.+.+.++..+||+|..+.+. +--+|...+++.+...+..
T Consensus 51 e~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~ 92 (121)
T 2bz2_A 51 PTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE 92 (121)
T ss_dssp HHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHH
T ss_pred HHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 56778888999999877764 3457788899988888743
No 222
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=44.61 E-value=31 Score=22.51 Aligned_cols=48 Identities=8% Similarity=0.072 Sum_probs=33.2
Q ss_pred hhHHHHHHHhhcCCeEEEEec--------CeeEEEecCHHHHHHHHhhCCccccCCc
Q 041575 14 THRILGNMANKYGPIFTMKMG--------VNRALVVSNSEITKECFTTNDKALASRP 62 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~--------~~~~v~i~~p~~~~~i~~~~~~~~~~~~ 62 (263)
..+.+.++.++|| +..+.+. +--+|...+++.++..+..+...+..+.
T Consensus 59 te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~ 114 (139)
T 2hgn_A 59 TENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRY 114 (139)
T ss_dssp CHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCC
T ss_pred CHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEE
Confidence 4567888999999 5577663 1357888999999998844444444443
No 223
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.03 E-value=33 Score=21.04 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=31.5
Q ss_pred hhHHHHHHHhhcCCe----EEEEec-----CeeEEEecCHHHHHHHHhh-CCccccCC
Q 041575 14 THRILGNMANKYGPI----FTMKMG-----VNRALVVSNSEITKECFTT-NDKALASR 61 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i----~~~~~~-----~~~~v~i~~p~~~~~i~~~-~~~~~~~~ 61 (263)
..+.+.++..+||+| +.+.+. +.-+|...+++.+..++.. +...+..+
T Consensus 38 t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 95 (115)
T 2cpx_A 38 TERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGK 95 (115)
T ss_dssp CHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSC
T ss_pred CHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 355677888899987 444432 2457888999999988854 33334333
No 224
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=44.03 E-value=44 Score=19.06 Aligned_cols=46 Identities=15% Similarity=0.275 Sum_probs=32.7
Q ss_pred cccccccCCCCchhHHHHHHHhhc----C-------CeEEEEec---CeeEEEecCHHHHHHHH
Q 041575 2 IGHLHLFGGPEPTHRILGNMANKY----G-------PIFTMKMG---VNRALVVSNSEITKECF 51 (263)
Q Consensus 2 lG~~~~~~~~~~~~~~~~~~~~~y----G-------~i~~~~~~---~~~~v~i~~p~~~~~i~ 51 (263)
+||++.- -..+.+.++..+| | +|..+.+. +.-+|-..+++.+...+
T Consensus 11 V~nLp~~----~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~ 70 (87)
T 2hzc_A 11 VGNIPFG----ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM 70 (87)
T ss_dssp EESCCTT----CCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG
T ss_pred EeCCCCC----CCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH
Confidence 4666532 2345677777788 8 89888874 34578888999998888
No 225
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=43.90 E-value=53 Score=19.96 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=26.7
Q ss_pred hhcCCeEEEEecC--------eeEEEecCHHHHHHHHhh-CCccccCC
Q 041575 23 NKYGPIFTMKMGV--------NRALVVSNSEITKECFTT-NDKALASR 61 (263)
Q Consensus 23 ~~yG~i~~~~~~~--------~~~v~i~~p~~~~~i~~~-~~~~~~~~ 61 (263)
.+||+|..+.+.. .-.|...+++.+...... ++..+..|
T Consensus 49 ~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr 96 (104)
T 1jmt_A 49 EKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQ 96 (104)
T ss_dssp HHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred ccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCE
Confidence 8999999988742 345777888888877743 34444433
No 226
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.83 E-value=33 Score=20.77 Aligned_cols=48 Identities=10% Similarity=0.151 Sum_probs=32.5
Q ss_pred hhHHHHHHHhhcCCeEEEEec--------CeeEEEecCHHHHHHHHhhCCccccCCc
Q 041575 14 THRILGNMANKYGPIFTMKMG--------VNRALVVSNSEITKECFTTNDKALASRP 62 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~--------~~~~v~i~~p~~~~~i~~~~~~~~~~~~ 62 (263)
..+.+.++...||++ .+.+. +--+|...+++.++..+..+...+..+.
T Consensus 28 te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 83 (102)
T 1wez_A 28 TENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRY 83 (102)
T ss_dssp CHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSC
T ss_pred CHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcE
Confidence 356778888899954 66552 1246788999999998855444444444
No 227
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=43.67 E-value=47 Score=19.42 Aligned_cols=28 Identities=7% Similarity=0.144 Sum_probs=21.8
Q ss_pred HHHHHHHhhcCCe---EEEEecCeeEEEecC
Q 041575 16 RILGNMANKYGPI---FTMKMGVNRALVVSN 43 (263)
Q Consensus 16 ~~~~~~~~~yG~i---~~~~~~~~~~v~i~~ 43 (263)
+...++++.|.++ ++++.++.+.+.|++
T Consensus 24 EL~kRl~~~fpd~~~~V~Vr~~s~n~lsV~g 54 (81)
T 1ghh_A 24 ELSRRIQYAFPDNEGHVSVRYAAANNLSVIG 54 (81)
T ss_dssp HHHHHHHHHCSSSCCEEEEEEESSCEEEEES
T ss_pred HHHHHHHhhCCCCCceEEEeecCCCceeecC
Confidence 4566788889885 999998888888744
No 228
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=43.40 E-value=61 Score=20.66 Aligned_cols=44 Identities=7% Similarity=0.151 Sum_probs=30.6
Q ss_pred hhHHHHHHHhhcCCeE--EEEec--------CeeEEEecCHHHHHHHHhhCCccc
Q 041575 14 THRILGNMANKYGPIF--TMKMG--------VNRALVVSNSEITKECFTTNDKAL 58 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~--~~~~~--------~~~~v~i~~p~~~~~i~~~~~~~~ 58 (263)
..+.+.++...| .|. .+.+. +--+|...+++.++..+......+
T Consensus 55 te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l 108 (126)
T 2hgm_A 55 TKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERI 108 (126)
T ss_dssp CHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCB
T ss_pred CHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEE
Confidence 356678888888 566 66652 235788899999999886544333
No 229
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=42.52 E-value=27 Score=20.54 Aligned_cols=40 Identities=8% Similarity=-0.036 Sum_probs=29.7
Q ss_pred hhHHHHHHHhhcC-CeEEEEec---------CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYG-PIFTMKMG---------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG-~i~~~~~~---------~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++.++|| +|..+.+. +--+|-..+++.+...+..
T Consensus 14 te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~ 63 (91)
T 2lxi_A 14 TEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEA 63 (91)
T ss_dssp CHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHh
Confidence 3567888889999 67766652 1247889999999998853
No 230
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=42.16 E-value=32 Score=21.05 Aligned_cols=46 Identities=11% Similarity=0.169 Sum_probs=31.8
Q ss_pred hhHHHHHHHhhcCCeE--------EEEecC---------eeEEEecCHHHHHHHHhh-CCcccc
Q 041575 14 THRILGNMANKYGPIF--------TMKMGV---------NRALVVSNSEITKECFTT-NDKALA 59 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~--------~~~~~~---------~~~v~i~~p~~~~~i~~~-~~~~~~ 59 (263)
..+.+.++..+||+|. .+.+.. .-+|...+++.+..++.. +...+.
T Consensus 28 t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 28 TLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 3567888999999986 355421 347888999999988853 443343
No 231
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=41.06 E-value=41 Score=24.71 Aligned_cols=52 Identities=10% Similarity=0.171 Sum_probs=34.2
Q ss_pred cccccccCCCCchhHHHHHHHhhcCCeEEEEec------CeeEEEecCHHHHHHHHhh
Q 041575 2 IGHLHLFGGPEPTHRILGNMANKYGPIFTMKMG------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 2 lG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~------~~~~v~i~~p~~~~~i~~~ 53 (263)
+||+..-....+....+.++..+||+|..+.+. +.-+|...+++.+...+..
T Consensus 14 V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~ 71 (282)
T 3pgw_A 14 INNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71 (282)
T ss_pred EeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHH
Confidence 566653221122223366888999999988753 2457888999999988843
No 232
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=41.03 E-value=56 Score=19.47 Aligned_cols=39 Identities=13% Similarity=0.142 Sum_probs=30.3
Q ss_pred hHHHHHHHhhcCCeEEEEec---------CeeEEEecCHHHHHHHHhh
Q 041575 15 HRILGNMANKYGPIFTMKMG---------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 15 ~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~~p~~~~~i~~~ 53 (263)
...+.++..+||+|..+.+. +--+|...+++.+...+..
T Consensus 26 ~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ 73 (100)
T 3ns6_A 26 KKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKS 73 (100)
T ss_dssp HHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHH
Confidence 45677888999999988873 2347888999999888843
No 233
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=39.87 E-value=58 Score=19.24 Aligned_cols=39 Identities=13% Similarity=0.142 Sum_probs=28.3
Q ss_pred hhHHHHHHHhhcCCeEE--------EEec---------CeeEEEecCHHHHHHHHh
Q 041575 14 THRILGNMANKYGPIFT--------MKMG---------VNRALVVSNSEITKECFT 52 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~--------~~~~---------~~~~v~i~~p~~~~~i~~ 52 (263)
..+.+.++..+||+|.. +.+. +.-+|...+++.+...+.
T Consensus 26 t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~ 81 (99)
T 2la6_A 26 TIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAID 81 (99)
T ss_dssp CHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHH
Confidence 35668888899998876 5542 134677889998888875
No 234
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.36 E-value=61 Score=19.37 Aligned_cols=44 Identities=9% Similarity=0.097 Sum_probs=31.3
Q ss_pred hhHHHHHHHhhcCCeEEEEecC----------eeEEEecCHHHHHHHHhhCCccc
Q 041575 14 THRILGNMANKYGPIFTMKMGV----------NRALVVSNSEITKECFTTNDKAL 58 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~----------~~~v~i~~p~~~~~i~~~~~~~~ 58 (263)
..+.+.++..+|| |..+.+.. .-+|...+++.+..++.-+...+
T Consensus 28 t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~ 81 (104)
T 1wi8_A 28 TEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESL 81 (104)
T ss_dssp CHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEE
T ss_pred CHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEe
Confidence 3566788889999 88887631 24688899999998883333333
No 235
>3fgx_A Rbstp2171; structural genomics, PSI-2, Pro structure initiative, midwest center for structural genomic structural genomics; 2.90A {Bacillus stearothermophilus}
Probab=39.23 E-value=20 Score=22.47 Aligned_cols=18 Identities=17% Similarity=0.558 Sum_probs=14.2
Q ss_pred HHHHHHHhhcCCeEEEEe
Q 041575 16 RILGNMANKYGPIFTMKM 33 (263)
Q Consensus 16 ~~~~~~~~~yG~i~~~~~ 33 (263)
..-.++.++||.+|++.+
T Consensus 8 ~~~~~lk~kygk~y~v~~ 25 (114)
T 3fgx_A 8 INTDELKQKYGRVYEIRI 25 (114)
T ss_dssp -CHHHHHHHHSSEEEEEE
T ss_pred ccHHHHHHHhCceEEEEe
Confidence 345789999999999855
No 236
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=37.53 E-value=55 Score=23.44 Aligned_cols=40 Identities=18% Similarity=0.147 Sum_probs=30.2
Q ss_pred hhHHHHHHHhhcC--CeEEEEecC---------eeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYG--PIFTMKMGV---------NRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG--~i~~~~~~~---------~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+|| .|..+.+.. --+|.+.+.+.++.++..
T Consensus 81 te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~ 131 (229)
T 3q2s_C 81 TDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDL 131 (229)
T ss_dssp CHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTT
T ss_pred CHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 3567888889999 898887621 247888899998888853
No 237
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=36.37 E-value=46 Score=20.18 Aligned_cols=39 Identities=3% Similarity=-0.078 Sum_probs=28.4
Q ss_pred hHHHHHHHhhcCC---eEEEEec--------CeeEEEecCHHHHHHHHhh
Q 041575 15 HRILGNMANKYGP---IFTMKMG--------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 15 ~~~~~~~~~~yG~---i~~~~~~--------~~~~v~i~~p~~~~~i~~~ 53 (263)
.+.+.++...||+ |..+.+. +.-+|...+++.++..+..
T Consensus 25 e~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~ 74 (107)
T 2lmi_A 25 MEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEK 74 (107)
T ss_dssp SHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh
Confidence 4567788888887 6666552 2357888999999999863
No 238
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.83 E-value=73 Score=19.46 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=29.5
Q ss_pred hHHHHHHHhhcCCeEEEEec-----CeeEEEecCHHHHHHHHhh
Q 041575 15 HRILGNMANKYGPIFTMKMG-----VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 15 ~~~~~~~~~~yG~i~~~~~~-----~~~~v~i~~p~~~~~i~~~ 53 (263)
.+.+.++..+||+|..+.+. +.-+|...+++.+...+..
T Consensus 40 e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~ 83 (112)
T 2dit_A 40 REDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQT 83 (112)
T ss_dssp HHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHH
T ss_pred HHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHH
Confidence 35677888999999888663 3457788899988888754
No 239
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=35.56 E-value=28 Score=21.75 Aligned_cols=44 Identities=5% Similarity=0.010 Sum_probs=30.2
Q ss_pred hhHHHHHHHhhcCC---eEEEEec--------CeeEEEecCHHHHHHHHhhCCcc
Q 041575 14 THRILGNMANKYGP---IFTMKMG--------VNRALVVSNSEITKECFTTNDKA 57 (263)
Q Consensus 14 ~~~~~~~~~~~yG~---i~~~~~~--------~~~~v~i~~p~~~~~i~~~~~~~ 57 (263)
..+.+.++...||+ |..+.+. +--+|.+.+++.++..+..+...
T Consensus 30 te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~ 84 (118)
T 2db1_A 30 SIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRES 84 (118)
T ss_dssp CHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEE
T ss_pred CHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCe
Confidence 35568888888997 5554431 13478899999999998644333
No 240
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.04 E-value=73 Score=19.59 Aligned_cols=44 Identities=9% Similarity=0.018 Sum_probs=31.0
Q ss_pred hhHHHHHHHhhcCCeEEEEec--------CeeEEEecCHHHHHHHHhhCCccc
Q 041575 14 THRILGNMANKYGPIFTMKMG--------VNRALVVSNSEITKECFTTNDKAL 58 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~--------~~~~v~i~~p~~~~~i~~~~~~~~ 58 (263)
..+.+.++.+.| .|..+.+. +--+|-+.+++.+...+..+...+
T Consensus 29 te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~ 80 (109)
T 2dnn_A 29 MENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLM 80 (109)
T ss_dssp CHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEE
T ss_pred CHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeE
Confidence 355677888888 67777652 245889999999999985444433
No 241
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=34.71 E-value=30 Score=22.44 Aligned_cols=41 Identities=7% Similarity=0.063 Sum_probs=28.8
Q ss_pred hhHHHHHHHhhcCC---eEEEEe-----c---CeeEEEecCHHHHHHHHhhC
Q 041575 14 THRILGNMANKYGP---IFTMKM-----G---VNRALVVSNSEITKECFTTN 54 (263)
Q Consensus 14 ~~~~~~~~~~~yG~---i~~~~~-----~---~~~~v~i~~p~~~~~i~~~~ 54 (263)
..+.+.++.+.||+ |..+.+ + +--+|...+++.++..+..+
T Consensus 57 te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~ 108 (136)
T 2hgl_A 57 SVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKD 108 (136)
T ss_dssp CHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTT
T ss_pred CHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcC
Confidence 35668888899998 544433 1 23478889999999998633
No 242
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.29 E-value=56 Score=20.08 Aligned_cols=39 Identities=8% Similarity=0.168 Sum_probs=28.4
Q ss_pred hhHHHHHHHhhcCCeEEEEec------------CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMG------------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~------------~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|. +.+. +--+|...+++.++.++..
T Consensus 21 te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~ 71 (114)
T 2dnl_A 21 DEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDA 71 (114)
T ss_dssp CHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHh
Confidence 3567888899999987 4431 1346788999999888753
No 243
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=32.74 E-value=23 Score=20.82 Aligned_cols=40 Identities=8% Similarity=0.005 Sum_probs=26.9
Q ss_pred hhHHHHHHHhhcCCeEEEEe------c---CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKM------G---VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~------~---~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+ + +.-+|-..+++.++..+..
T Consensus 28 t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 76 (95)
T 2ek1_A 28 SIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 76 (95)
T ss_dssp CHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHH
Confidence 35567888899997642221 1 2246778899999888853
No 244
>1fry_A Myeloid antimicrobial peptide; random-ordered coil-loop, antimicrobial protein; NMR {Synthetic} SCOP: j.93.1.1
Probab=32.61 E-value=9.1 Score=16.41 Aligned_cols=8 Identities=50% Similarity=1.066 Sum_probs=5.4
Q ss_pred HhhcCCeE
Q 041575 22 ANKYGPIF 29 (263)
Q Consensus 22 ~~~yG~i~ 29 (263)
.++|||.+
T Consensus 14 vkkygptv 21 (29)
T 1fry_A 14 VKKYGPTV 21 (29)
T ss_dssp TTTTSSSC
T ss_pred hhhcCCce
Confidence 46888754
No 245
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=31.09 E-value=84 Score=18.54 Aligned_cols=39 Identities=13% Similarity=0.201 Sum_probs=30.9
Q ss_pred hHHHHHHHhhcCCeEEEEec-CeeEEEecCHHHHHHHHhh
Q 041575 15 HRILGNMANKYGPIFTMKMG-VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 15 ~~~~~~~~~~yG~i~~~~~~-~~~~v~i~~p~~~~~i~~~ 53 (263)
.+.+.++..+||+|..+.+. +.-+|...+++.+..++..
T Consensus 37 ~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~ 76 (97)
T 2xnq_A 37 KEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEX 76 (97)
T ss_dssp HHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHH
Confidence 45678888999999888873 3457888899999888853
No 246
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=30.98 E-value=86 Score=18.61 Aligned_cols=44 Identities=11% Similarity=0.094 Sum_probs=30.2
Q ss_pred hhHHHHHHHhhcCCeEEEEecC---------eeEEEecCHHHHHHHHhhCCccc
Q 041575 14 THRILGNMANKYGPIFTMKMGV---------NRALVVSNSEITKECFTTNDKAL 58 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~~p~~~~~i~~~~~~~~ 58 (263)
..+.+.++..+|| |..+.+.. .-+|...+++.+..++.-+...+
T Consensus 28 t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~ 80 (103)
T 2dng_A 28 VQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALL 80 (103)
T ss_dssp CHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeE
Confidence 3556788888997 87776631 23688899999999883333333
No 247
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.63 E-value=63 Score=18.74 Aligned_cols=40 Identities=8% Similarity=-0.061 Sum_probs=27.4
Q ss_pred hhHHHHHHHhhcCC-eEEEEe--cCeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGP-IFTMKM--GVNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~-i~~~~~--~~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+ +-.+.+ -+.-+|-..+++.+...+..
T Consensus 21 t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~ 63 (93)
T 2cqh_A 21 TADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIET 63 (93)
T ss_dssp CHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHH
Confidence 35667888899998 332222 34457788899988888753
No 248
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=27.01 E-value=1.1e+02 Score=20.02 Aligned_cols=53 Identities=13% Similarity=0.226 Sum_probs=33.7
Q ss_pred cccccccCCCCchhHHHHHHHhhc----C-------CeEEEEec---CeeEEEecCHHHHHHHHhhCCccc
Q 041575 2 IGHLHLFGGPEPTHRILGNMANKY----G-------PIFTMKMG---VNRALVVSNSEITKECFTTNDKAL 58 (263)
Q Consensus 2 lG~~~~~~~~~~~~~~~~~~~~~y----G-------~i~~~~~~---~~~~v~i~~p~~~~~i~~~~~~~~ 58 (263)
+||++.-. ..+.+.++.++| | +|..+.++ +.-+|...+++.+...+.-++..+
T Consensus 9 V~nLp~~~----t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~ 75 (172)
T 2g4b_A 9 VGNIPFGI----TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIF 75 (172)
T ss_dssp EESCCTTC----CHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHGGGTTCEE
T ss_pred EcCCCccc----CHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEe
Confidence 56665322 234455566666 7 78877764 345788999999999984333333
No 249
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=26.95 E-value=1.4e+02 Score=23.14 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=31.8
Q ss_pred hhHHHHHHHhhcCCeEEEEec---CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMG---VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~---~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.+...+||.|..+.+. +--+|-..+.+.++..+..
T Consensus 33 te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~ 75 (345)
T 3tht_A 33 SRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVT 75 (345)
T ss_dssp CHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 466788899999999988873 3357888899999888854
No 250
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=26.29 E-value=1.4e+02 Score=21.62 Aligned_cols=40 Identities=8% Similarity=0.189 Sum_probs=30.6
Q ss_pred hhHHHHHHHhhcCCeEEEEec--------CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKMG--------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~~--------~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.+. +.-+|-..+++.+..++..
T Consensus 109 t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~ 156 (261)
T 3sde_A 109 SNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALER 156 (261)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 356788888999999888762 2247888999998888754
No 251
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=26.15 E-value=1.7e+02 Score=20.54 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=35.3
Q ss_pred hHHHHHHHhhcCCeEEEEec----CeeEEEecCHHHHHHHHhh-CCccccCCc
Q 041575 15 HRILGNMANKYGPIFTMKMG----VNRALVVSNSEITKECFTT-NDKALASRP 62 (263)
Q Consensus 15 ~~~~~~~~~~yG~i~~~~~~----~~~~v~i~~p~~~~~i~~~-~~~~~~~~~ 62 (263)
.+.+.++.++||+|..+.+. +.-+|...+++.+...+.. +...+..++
T Consensus 49 e~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 101 (229)
T 2adc_A 49 PQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP 101 (229)
T ss_dssp HHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSB
T ss_pred HHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 46678888999999988874 4468899999999988852 444444443
No 252
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=26.07 E-value=84 Score=19.83 Aligned_cols=37 Identities=5% Similarity=-0.030 Sum_probs=23.8
Q ss_pred hHHHHHHHhhcCCeEE--EEec---------CeeEEEecCHHHHHHHHh
Q 041575 15 HRILGNMANKYGPIFT--MKMG---------VNRALVVSNSEITKECFT 52 (263)
Q Consensus 15 ~~~~~~~~~~yG~i~~--~~~~---------~~~~v~i~~p~~~~~i~~ 52 (263)
.+.+.++..+||+|.. +++. +--+|-..++ .+...+.
T Consensus 37 e~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~ 84 (131)
T 2m2b_A 37 MDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQ 84 (131)
T ss_dssp SHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHH
T ss_pred HHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHH
Confidence 5678888999999843 4431 2346777788 5555543
No 253
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=25.32 E-value=55 Score=21.35 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=17.1
Q ss_pred CchhHHHHHHHhhcCCeEEEEe
Q 041575 12 EPTHRILGNMANKYGPIFTMKM 33 (263)
Q Consensus 12 ~~~~~~~~~~~~~yG~i~~~~~ 33 (263)
.-....+..++..||+|..+.+
T Consensus 17 ~tte~~Lk~~Fs~fGeV~~~~l 38 (136)
T 2j8a_A 17 NIQDISIKNYFKKYGEISHFEA 38 (136)
T ss_dssp CCCHHHHHHHHHTTSCCSEEEE
T ss_pred CCCHHHHHHHHHhcCCeEEEEE
Confidence 3456788999999999877654
No 254
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.09 E-value=1e+02 Score=19.18 Aligned_cols=39 Identities=10% Similarity=0.047 Sum_probs=26.5
Q ss_pred hHHHHHHHhhcCCeE---EEEe---c---CeeEEEecCHHHHHHHHhh
Q 041575 15 HRILGNMANKYGPIF---TMKM---G---VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 15 ~~~~~~~~~~yG~i~---~~~~---~---~~~~v~i~~p~~~~~i~~~ 53 (263)
.+.+.++...||+|. .+.. + +.-+|...+++.++..+..
T Consensus 39 e~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~ 86 (124)
T 1wel_A 39 NKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 86 (124)
T ss_dssp HHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTS
T ss_pred HHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHh
Confidence 466788888999763 2221 1 2347888899999888853
No 255
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=24.93 E-value=53 Score=19.57 Aligned_cols=40 Identities=5% Similarity=0.005 Sum_probs=28.3
Q ss_pred hhHHHHHHHhhcCC--eEEEEec---------CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGP--IFTMKMG---------VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~--i~~~~~~---------~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++.++||+ +..+++. +--+|-..+++.+..++..
T Consensus 22 tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~ 72 (95)
T 2lkz_A 22 VVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQI 72 (95)
T ss_dssp CHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHH
T ss_pred CHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHH
Confidence 46778888999995 4445441 1247888999988888753
No 256
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=23.45 E-value=39 Score=19.94 Aligned_cols=40 Identities=8% Similarity=0.002 Sum_probs=27.2
Q ss_pred hhHHHHHHHhhcCCeEE--EEe----c---CeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFT--MKM----G---VNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~--~~~----~---~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|.. +.. + +.-+|...+++.++.++..
T Consensus 28 t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 76 (98)
T 2cqp_A 28 SIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 76 (98)
T ss_dssp CHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 35668888899997742 211 1 2346788999999988854
No 257
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=22.60 E-value=1.8e+02 Score=19.61 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=34.9
Q ss_pred hHHHHHHHhhcCCeEEEEec----CeeEEEecCHHHHHHHHhh-CCccccCCc
Q 041575 15 HRILGNMANKYGPIFTMKMG----VNRALVVSNSEITKECFTT-NDKALASRP 62 (263)
Q Consensus 15 ~~~~~~~~~~yG~i~~~~~~----~~~~v~i~~p~~~~~i~~~-~~~~~~~~~ 62 (263)
.+.+.++..+||+|..+.+. +.-+|...+++.+...+.. ++..+..++
T Consensus 18 ~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 70 (198)
T 1qm9_A 18 PQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP 70 (198)
T ss_dssp HHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCC
T ss_pred HHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeE
Confidence 46778888999999988874 3457889999999988852 344443433
No 258
>2cly_C ATP synthase coupling factor 6, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.45.1.1 PDB: 1vzs_A 2wss_V*
Probab=21.57 E-value=1.3e+02 Score=17.37 Aligned_cols=34 Identities=6% Similarity=-0.101 Sum_probs=17.4
Q ss_pred HHHHHHHhccccCCCCcceehhHHHHHHHHHHHH
Q 041575 117 SIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIII 150 (263)
Q Consensus 117 l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~ 150 (263)
++++++++..++...|..||..+.+.+-.-+-+.
T Consensus 12 FldKIREYk~Ks~~~G~lVD~~Pe~~kel~~el~ 45 (77)
T 2cly_C 12 FVDKIREYRTKRQTSGGPVDAGPEYQQDLDRELF 45 (77)
T ss_dssp HHHHHHHHHHHHTCCSSSSSCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCCCCCHHHHHHHHHHHH
Confidence 4444444333333345678777666655444443
No 259
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.52 E-value=1.2e+02 Score=17.26 Aligned_cols=43 Identities=12% Similarity=0.079 Sum_probs=29.0
Q ss_pred hHHHHHHHhhcCCeEEEEec--------CeeEEEecCHHHHHHHHhhCCccc
Q 041575 15 HRILGNMANKYGPIFTMKMG--------VNRALVVSNSEITKECFTTNDKAL 58 (263)
Q Consensus 15 ~~~~~~~~~~yG~i~~~~~~--------~~~~v~i~~p~~~~~i~~~~~~~~ 58 (263)
.+.+.++..+| +|..+.+. +.-+|...+++.+...+.-+...+
T Consensus 24 ~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~ 74 (91)
T 2dgw_A 24 EKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYM 74 (91)
T ss_dssp HHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEE
T ss_pred HHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCcee
Confidence 45677888888 77766552 134678889999999886333333
No 260
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.42 E-value=66 Score=19.02 Aligned_cols=40 Identities=18% Similarity=0.033 Sum_probs=27.3
Q ss_pred hhHHHHHHHhhcCCeEEEEe-----cCeeEEEecCHHHHHHHHhh
Q 041575 14 THRILGNMANKYGPIFTMKM-----GVNRALVVSNSEITKECFTT 53 (263)
Q Consensus 14 ~~~~~~~~~~~yG~i~~~~~-----~~~~~v~i~~p~~~~~i~~~ 53 (263)
..+.+.++..+||+|..+.. -+.-+|...+++.++.++..
T Consensus 28 t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 72 (101)
T 2fc9_A 28 TEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNS 72 (101)
T ss_dssp CHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHH
Confidence 35567788888998733222 12347888999999998853
No 261
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.11 E-value=1.5e+02 Score=17.70 Aligned_cols=43 Identities=9% Similarity=0.079 Sum_probs=30.4
Q ss_pred hHHHHHHHhhcCCeEEEEec-CeeEEEecCHHHHHHHHhhCCcc
Q 041575 15 HRILGNMANKYGPIFTMKMG-VNRALVVSNSEITKECFTTNDKA 57 (263)
Q Consensus 15 ~~~~~~~~~~yG~i~~~~~~-~~~~v~i~~p~~~~~i~~~~~~~ 57 (263)
...+.+....||.|..+++. ..-+|...+.+.+..++.-++..
T Consensus 29 ~~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~mnG~~ 72 (91)
T 2dnr_A 29 IDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLSLNGKE 72 (91)
T ss_dssp HHHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGGGTTCE
T ss_pred HHHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHhcCCeE
Confidence 34566677789999988864 45677888988888777534333
Done!