BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041579
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 118/344 (34%), Positives = 174/344 (50%), Gaps = 30/344 (8%)
Query: 17 VENVQALA-SNSKEIPSRYIRP--ELDD------EQVLADGSLHIPVIDMSKLQDDDE-- 65
VE V++LA S IP YIRP EL+ E+ DG +P ID+ ++ DDE
Sbjct: 3 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGP-QVPTIDLKNIESDDEKI 61
Query: 66 --DELAEFHLACKESGFLQLINHGVPEKAIEKMKTDIEEFFKLPLEEKMACA--QLPNSI 121
+ + E A + G + LINHG+P +E++K EEFF L +EEK A Q I
Sbjct: 62 RENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKI 121
Query: 122 EGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTS-LATIEEYSLELQKVTIF 180
+GYG + +L+W D F L P R S+WP P+ + EY+ L+ +
Sbjct: 122 QGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATK 181
Query: 181 LLKLMAKNLGIEPGKL---ASLFEDGIQGIRMNYYPPYAQANRVIGLTPHSDSVAXXXXX 237
+ K ++ LG+EP +L E+ + +++NYYP Q +G+ H+D A
Sbjct: 182 VFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFIL 241
Query: 238 XXXXXXXXXXKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSV 297
+ GKWV K +P + +++IGD +EI+SNG+YKSI HR +VN EK R+S
Sbjct: 242 HNMVPGLQLFYE-GKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISW 300
Query: 298 AAF-DSPNMNTTIGPLPN--SVED------RAIYKNITHEEFIK 332
A F + P + PLP SVE R ++I H+ F K
Sbjct: 301 AVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGK 344
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 118/344 (34%), Positives = 174/344 (50%), Gaps = 30/344 (8%)
Query: 17 VENVQALA-SNSKEIPSRYIRP--ELDD------EQVLADGSLHIPVIDMSKLQDDDE-- 65
VE V++LA S IP YIRP EL+ E+ DG +P ID+ ++ DDE
Sbjct: 4 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGP-QVPTIDLKNIESDDEKI 62
Query: 66 --DELAEFHLACKESGFLQLINHGVPEKAIEKMKTDIEEFFKLPLEEKMACA--QLPNSI 121
+ + E A + G + LINHG+P +E++K EEFF L +EEK A Q I
Sbjct: 63 RENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKI 122
Query: 122 EGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTS-LATIEEYSLELQKVTIF 180
+GYG + +L+W D F L P R S+WP P+ + EY+ L+ +
Sbjct: 123 QGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATK 182
Query: 181 LLKLMAKNLGIEPGKL---ASLFEDGIQGIRMNYYPPYAQANRVIGLTPHSDSVAXXXXX 237
+ K ++ LG+EP +L E+ + +++NYYP Q +G+ H+D A
Sbjct: 183 VFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFIL 242
Query: 238 XXXXXXXXXXKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSV 297
+ GKWV K +P + +++IGD +EI+SNG+YKSI HR +VN EK R+S
Sbjct: 243 HNMVPGLQLFYE-GKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISW 301
Query: 298 AAF-DSPNMNTTIGPLPN--SVED------RAIYKNITHEEFIK 332
A F + P + PLP SVE R ++I H+ F K
Sbjct: 302 AVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGK 345
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 162 bits (409), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 119/344 (34%), Positives = 171/344 (49%), Gaps = 30/344 (8%)
Query: 17 VENVQALA-SNSKEIPSRYIRP--ELDD------EQVLADGSLHIPVIDMSKLQDDDE-- 65
VE V++LA S IP YIRP EL+ E+ DG +P ID+ ++ DDE
Sbjct: 4 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGP-QVPTIDLKNIESDDEKI 62
Query: 66 --DELAEFHLACKESGFLQLINHGVPEKAIEKMKTDIEEFFKLPLEEKMACA--QLPNSI 121
+ + E A + G LINHG+P E++K EEFF L +EEK A Q I
Sbjct: 63 RENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKI 122
Query: 122 EGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTS-LATIEEYSLELQKVTIF 180
+GYG + +L+W D F L P R S+WP P+ + EY+ L+ +
Sbjct: 123 QGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATK 182
Query: 181 LLKLMAKNLGIEPGKL---ASLFEDGIQGIRMNYYPPYAQANRVIGLTPHSDSVAXXXXX 237
+ K ++ LG+EP +L E+ + ++NYYP Q +G+ H+D A
Sbjct: 183 VFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFIL 242
Query: 238 XXXXXXXXXXKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSV 297
+ GKWV K +P + + +IGD +EI+SNG+YKSI HR +VN EK R+S
Sbjct: 243 HNXVPGLQLFYE-GKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISW 301
Query: 298 AAF-DSPNMNTTIGPLPN--SVED------RAIYKNITHEEFIK 332
A F + P + PLP SVE R ++I H+ F K
Sbjct: 302 AVFCEPPKDKIVLKPLPEXVSVESPAKFPPRTFAQHIEHKLFGK 345
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 141/302 (46%), Gaps = 17/302 (5%)
Query: 51 HIPVIDMSKLQDDDEDELAE-FHLACKESGFLQLINHGVPEKAIEKMKTDIEEFFKLPLE 109
+ P+I + K+ + E AC+ GF +L+NHG+P + + ++ + +K E
Sbjct: 3 NFPIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXE 62
Query: 110 EKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLATI-E 168
++ ++EG QA V D W FL P I S P + +
Sbjct: 63 QRFKELVASKALEGV-QAEVTDXD----WESTFFLKHLP--ISNISEVPDLDEEYREVXR 115
Query: 169 EYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQ---GIRMNYYPPYAQANRVIGLT 225
+++ L+K+ LL L+ +NLG+E G L + F G +++ YPP + + + GL
Sbjct: 116 DFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLR 175
Query: 226 PHSDSVAXXXXXXXXXXXXXXXKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHR 285
H+D+ K G+W+ V P + ++N+GD +E+++NG+YKS+ HR
Sbjct: 176 AHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHR 235
Query: 286 AVVNPEKERLSVAAFDSPNMNTTIGPLPNSVEDRA-----IYKNITHEEFIKLFVASKLD 340
+ + R S+A+F +P + I P P VE A +Y +++ KL+ K
Sbjct: 236 VIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXKLYAGLKFQ 295
Query: 341 GK 342
K
Sbjct: 296 AK 297
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 12/244 (4%)
Query: 70 EFHLACKESGFLQLINHGVPEKAIEKMKTDIEEFFKLPLEEKMACAQLPNSIEGYGQAFV 129
E + + GF L ++ + + I+ + FF LP+E K A + GY F
Sbjct: 25 ELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGY-IPFG 83
Query: 130 VSKDQKLDWGDMLFLLTQPANI---------RTTSLWPT-IPTSLATIEEYSLELQKVTI 179
V + D D+ ++ ++WP IP + L
Sbjct: 84 VETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLDGXGG 143
Query: 180 FLLKLMAKNLGIEPGKLASLFEDGIQGIRMNYYPPYAQANRVIGLTPHSDSVAXXXXXXX 239
+L+ +A L +E +DG +R+ +YPP + + H D
Sbjct: 144 KVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLLGA 203
Query: 240 XXXXXXXXKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAA 299
+ G+W+P+ P PG +INIGD +E ++N S HR VVNP ER V
Sbjct: 204 EEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHR-VVNPPPERRGVPR 262
Query: 300 FDSP 303
+ +P
Sbjct: 263 YSTP 266
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 100/262 (38%), Gaps = 42/262 (16%)
Query: 66 DELAEFHLACKESGFLQLINHGVPEKAIEKMKTDIEEFF------KLPLEEKMACAQLPN 119
D F + +E+GF L NH + ++ +E++ T+ + FF + + P
Sbjct: 13 DSAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEFXFNRETHDGFFPA 72
Query: 120 SIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSL-ATIEEYSLELQKVT 178
SI + V KD K + P W IP SL A I Y +K
Sbjct: 73 SISETAKGHTV-KDIKE------YYHVYP--------WGRIPDSLRANILAY---YEKAN 114
Query: 179 IFLLKLMAKNLGIEPGKLASLFE----DGIQG-----IRMNYYPPYA--QANRVIGLTPH 227
+L+ P ++ + F + I +R+ +YPP + I H
Sbjct: 115 TLASELLEWIETYSPDEIKAKFSIPLPEXIANSHKTLLRILHYPPXTGDEEXGAIRAAAH 174
Query: 228 SDSVAXXXXXXXXXXXXXXXKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAV 287
D K G W+ V G IINIGD ++ S+G + S HR V
Sbjct: 175 EDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHR-V 233
Query: 288 VNPE-----KERLSVAAFDSPN 304
+NPE K R+S+ F P+
Sbjct: 234 INPEGTDKTKSRISLPLFLHPH 255
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 114/306 (37%), Gaps = 42/306 (13%)
Query: 51 HIPVIDMSKLQDDDEDE----LAEFHLACKESGFLQLINHGVPEKAIEKMKTDIEEF-FK 105
++P ID+S L DD+ + A +++GF +NHG+ ++++ +EF
Sbjct: 8 NVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGI---NVQRLSQKTKEFHMS 64
Query: 106 LPLEEKMACAQLPNSIEGYGQ---AFVVSKDQKLDWGDMLFL----------LTQPANIR 152
+ EEK A + E Q + +S K +L +
Sbjct: 65 ITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTH 124
Query: 153 TTSLWP---TIPTSLATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLF--EDGIQG- 206
++WP P E+Y ++ ++ LLK A LG E A F +D +
Sbjct: 125 EVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASV 184
Query: 207 --IRMNYYPPYAQA-------NRVIGLTPHSDSVAXXXXXXXXXXXXXXXKKYGKWVPVK 257
IR Y PY +A + H D V+ + + ++
Sbjct: 185 VLIRYPYLDPYPEAAIKTAADGTKLSFEWHED-VSLITVLYQSNVQNLQVETAAGYQDIE 243
Query: 258 PIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFDSPNMNTTIGPL----P 313
++IN G + ++N YK+ HR V ER S+ F + ++ I P P
Sbjct: 244 ADDTGYLINCGSYMAHLTNNYYKAPIHR-VKWVNAERQSLPFFVNLGYDSVIDPFDPREP 302
Query: 314 NSVEDR 319
N DR
Sbjct: 303 NGKSDR 308
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 114/306 (37%), Gaps = 42/306 (13%)
Query: 51 HIPVIDMSKLQDDDEDE----LAEFHLACKESGFLQLINHGVPEKAIEKMKTDIEEF-FK 105
++P ID+S L DD+ + A +++GF +NHG+ ++++ +EF
Sbjct: 8 NVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGI---NVQRLSQKTKEFHMS 64
Query: 106 LPLEEKMACAQLPNSIEGYGQ---AFVVSKDQKLDWGDMLFL----------LTQPANIR 152
+ EEK A + E Q + +S K +L +
Sbjct: 65 ITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTH 124
Query: 153 TTSLWP---TIPTSLATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLF--EDGIQG- 206
++WP P E+Y ++ ++ LLK A LG E A F +D +
Sbjct: 125 EVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASV 184
Query: 207 --IRMNYYPPYAQA-------NRVIGLTPHSDSVAXXXXXXXXXXXXXXXKKYGKWVPVK 257
IR Y PY +A + H D V+ + + ++
Sbjct: 185 VLIRYPYLDPYPEAAIKTAADGTKLSFEWHED-VSLITVLYQSNVQNLQVETAAGYQDIE 243
Query: 258 PIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFDSPNMNTTIGPL----P 313
++IN G + ++N YK+ HR V ER S+ F + ++ I P P
Sbjct: 244 ADDTGYLINCGSYMAHLTNNYYKAPIHR-VKWVNAERQSLPFFVNLGYDSVIDPFDPREP 302
Query: 314 NSVEDR 319
N DR
Sbjct: 303 NGKSDR 308
>pdb|2P3Y|A Chain A, Crystal Structure Of Vpa0735 From Vibrio Parahaemolyticus.
Northeast Structural Genomics Target Vpr109
pdb|2P3Y|B Chain B, Crystal Structure Of Vpa0735 From Vibrio Parahaemolyticus.
Northeast Structural Genomics Target Vpr109
Length = 491
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 119 NSIEGYGQAFVVS-KDQKLDW--GDMLFLLTQPANIRTTSLWPT 159
++I G+GQ ++V+ +D +W G+ + L PAN+ ++ W T
Sbjct: 354 STIPGFGQRYLVTYQDSDGNWLSGEHTYKLHVPANVPASNFWST 397
>pdb|3VB9|A Chain A, Crystal Structure Of Vpa0735 From Vibrio Parahaemolyticus
In Monoclinic Form, Northeast Structural Genomics Target
Vpr109
pdb|3VB9|B Chain B, Crystal Structure Of Vpa0735 From Vibrio Parahaemolyticus
In Monoclinic Form, Northeast Structural Genomics Target
Vpr109
pdb|3VB9|C Chain C, Crystal Structure Of Vpa0735 From Vibrio Parahaemolyticus
In Monoclinic Form, Northeast Structural Genomics Target
Vpr109
pdb|3VB9|D Chain D, Crystal Structure Of Vpa0735 From Vibrio Parahaemolyticus
In Monoclinic Form, Northeast Structural Genomics Target
Vpr109
Length = 483
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 119 NSIEGYGQAFVVS-KDQKLDW--GDMLFLLTQPANIRTTSLWPT 159
++I G+GQ ++V+ +D +W G+ + L PAN+ ++ W T
Sbjct: 354 STIPGFGQRYLVTYQDSDGNWLSGEHTYKLHVPANVPASNFWST 397
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 6/85 (7%)
Query: 21 QALASNSKEIPSRYIRPELDDEQVLADGSLHIPVIDMSKLQDDDEDELAEFHLACKESGF 80
+AL N K I + I P D + G +HI VI ++ E EF K +GF
Sbjct: 285 EALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGF 344
Query: 81 LQLINHGVPEKAIEKMKTDIEEFFK 105
H T I EF K
Sbjct: 345 QGFKVH------CNAFNTYIMEFLK 363
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,115,947
Number of Sequences: 62578
Number of extensions: 399880
Number of successful extensions: 1199
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1167
Number of HSP's gapped (non-prelim): 20
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 52 (24.6 bits)