Query 041581
Match_columns 261
No_of_seqs 207 out of 1342
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 08:38:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041581.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041581hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 2.8E-33 6.1E-38 238.5 6.9 149 1-155 1-169 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 100.0 1.3E-31 2.7E-36 195.9 4.0 74 2-82 1-74 (77)
3 cd00266 MADS_SRF_like SRF-like 100.0 1.5E-29 3.2E-34 187.6 4.7 75 2-82 1-75 (83)
4 smart00432 MADS MADS domain. 100.0 5.4E-29 1.2E-33 172.1 4.1 57 2-58 1-57 (59)
5 cd00120 MADS MADS: MCM1, Agamo 99.9 4.8E-28 1E-32 167.5 3.9 57 2-58 1-57 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 5.1E-26 1.1E-30 152.4 -1.0 49 9-57 1-49 (51)
7 KOG0015 Regulator of arginine 99.7 5.8E-19 1.3E-23 155.2 1.3 81 2-82 63-145 (338)
8 COG5068 ARG80 Regulator of arg 99.4 1.9E-13 4.1E-18 125.6 2.4 58 1-58 81-138 (412)
9 PF01486 K-box: K-box region; 98.8 1.8E-08 3.9E-13 77.2 8.0 84 93-183 14-98 (100)
10 PRK04098 sec-independent trans 87.2 0.53 1.1E-05 38.9 2.7 89 42-155 14-105 (158)
11 PF06698 DUF1192: Protein of u 83.8 3.1 6.7E-05 28.7 4.8 33 123-155 13-45 (59)
12 PF10584 Proteasome_A_N: Prote 72.7 0.55 1.2E-05 26.1 -1.3 14 43-56 3-16 (23)
13 PF15079 DUF4546: Domain of un 64.6 37 0.0008 28.4 7.1 31 130-160 78-108 (205)
14 PF07106 TBPIP: Tat binding pr 63.4 27 0.00059 28.8 6.4 62 96-160 77-138 (169)
15 PRK01919 tatB sec-independent 55.8 11 0.00025 31.4 2.8 24 133-156 56-79 (169)
16 PF14282 FlxA: FlxA-like prote 47.4 1.3E+02 0.0027 23.0 8.6 58 97-162 18-75 (106)
17 PF15372 DUF4600: Domain of un 43.3 1E+02 0.0022 24.6 6.3 30 128-157 48-77 (129)
18 PF07106 TBPIP: Tat binding pr 43.3 1.5E+02 0.0033 24.2 7.8 56 95-157 113-168 (169)
19 KOG3048 Molecular chaperone Pr 43.2 83 0.0018 25.7 5.8 39 125-163 7-45 (153)
20 PF08181 DegQ: DegQ (SacQ) fam 43.1 85 0.0018 19.9 4.6 26 132-157 5-30 (46)
21 TIGR03007 pepcterm_ChnLen poly 42.4 1.4E+02 0.0031 28.7 8.6 77 69-146 140-216 (498)
22 PF03233 Cauli_AT: Aphid trans 40.4 1.2E+02 0.0027 25.2 6.5 26 132-157 136-161 (163)
23 PF10491 Nrf1_DNA-bind: NLS-bi 40.0 28 0.00062 30.0 2.9 41 32-79 45-88 (214)
24 PF10044 Ret_tiss: Retinal tis 37.5 91 0.002 23.6 4.9 18 59-76 12-29 (95)
25 PF11460 DUF3007: Protein of u 37.5 35 0.00077 26.2 2.7 19 126-144 85-103 (104)
26 COG4917 EutP Ethanolamine util 35.6 37 0.0008 27.4 2.7 24 34-57 58-81 (148)
27 COG4888 Uncharacterized Zn rib 34.7 56 0.0012 25.0 3.4 76 1-80 1-81 (104)
28 PRK00182 tatB sec-independent 33.6 13 0.00029 30.8 -0.1 35 34-79 9-43 (160)
29 smart00782 PhnA_Zn_Ribbon PhnA 33.5 23 0.0005 23.2 1.0 22 28-49 2-23 (47)
30 PRK04654 sec-independent trans 32.4 15 0.00033 31.8 0.1 9 43-51 15-23 (214)
31 KOG1510 RNA polymerase II holo 31.4 1.7E+02 0.0037 23.6 5.8 26 133-158 104-129 (139)
32 PF11629 Mst1_SARAH: C termina 30.9 1.3E+02 0.0028 19.9 4.2 31 127-157 4-38 (49)
33 PF06937 EURL: EURL protein; 30.6 1.1E+02 0.0024 27.6 5.0 45 124-168 212-256 (285)
34 PF13082 DUF3931: Protein of u 30.1 20 0.00044 24.0 0.3 37 4-40 6-44 (66)
35 PRK10265 chaperone-modulator p 30.0 59 0.0013 24.5 3.0 78 32-114 10-94 (101)
36 KOG4252 GTP-binding protein [S 29.8 50 0.0011 28.3 2.7 29 38-79 90-118 (246)
37 smart00787 Spc7 Spc7 kinetocho 28.8 3E+02 0.0065 25.3 7.9 28 125-152 195-222 (312)
38 PRK10132 hypothetical protein; 28.8 1.9E+02 0.0042 22.3 5.6 55 97-158 11-65 (108)
39 PF10481 CENP-F_N: Cenp-F N-te 28.7 1.7E+02 0.0036 26.6 5.9 25 96-120 16-40 (307)
40 PF11944 DUF3461: Protein of u 28.4 84 0.0018 24.9 3.6 25 133-157 101-125 (125)
41 TIGR02231 conserved hypothetic 28.2 2.5E+02 0.0055 27.4 7.8 37 129-165 122-158 (525)
42 KOG4603 TBP-1 interacting prot 27.4 3.2E+02 0.0069 23.1 6.9 33 129-161 114-146 (201)
43 TIGR01005 eps_transp_fam exopo 26.4 2.5E+02 0.0054 28.8 7.6 76 70-146 174-249 (754)
44 KOG4637 Adaptor for phosphoino 26.1 49 0.0011 31.2 2.2 43 35-80 369-412 (464)
45 PF07083 DUF1351: Protein of u 25.9 3E+02 0.0064 23.7 7.0 80 67-157 22-101 (215)
46 PF14357 DUF4404: Domain of un 25.8 1E+02 0.0022 22.6 3.5 40 102-149 1-40 (85)
47 PRK03100 sec-independent trans 25.1 25 0.00055 28.3 0.2 10 42-51 15-24 (136)
48 PRK01371 sec-independent trans 25.0 70 0.0015 25.9 2.7 10 42-51 14-23 (137)
49 COG0139 HisI Phosphoribosyl-AM 23.9 36 0.00079 26.4 0.8 37 17-53 50-95 (111)
50 PF06005 DUF904: Protein of un 23.7 2.8E+02 0.006 19.7 5.4 29 131-159 1-32 (72)
51 PF04065 Not3: Not1 N-terminal 23.6 5E+02 0.011 22.9 7.9 64 67-145 22-85 (233)
52 PF02009 Rifin_STEVOR: Rifin/s 22.7 40 0.00088 30.8 1.0 15 67-81 35-49 (299)
53 PF05957 DUF883: Bacterial pro 22.5 2.6E+02 0.0057 20.4 5.3 32 129-160 22-53 (94)
54 PF01502 PRA-CH: Phosphoribosy 22.2 27 0.00058 25.3 -0.2 38 16-53 17-63 (75)
55 COG4575 ElaB Uncharacterized c 21.8 3.8E+02 0.0082 20.6 7.3 33 129-161 32-64 (104)
56 COG3883 Uncharacterized protei 21.5 3.9E+02 0.0085 24.0 6.9 26 133-158 79-104 (265)
57 PF13591 MerR_2: MerR HTH fami 21.0 62 0.0013 23.5 1.5 16 32-47 3-18 (84)
58 PF09151 DUF1936: Domain of un 20.9 51 0.0011 19.6 0.8 24 34-57 2-25 (36)
59 COG5570 Uncharacterized small 20.9 2.7E+02 0.006 18.7 4.9 44 100-148 7-50 (57)
60 PF10666 Phage_Gp14: Phage pro 20.8 3.6E+02 0.0077 21.5 5.7 44 96-149 37-80 (140)
61 PRK13677 hypothetical protein; 20.8 1.5E+02 0.0032 23.4 3.6 24 133-156 101-124 (125)
62 PF06120 Phage_HK97_TLTM: Tail 20.6 4.1E+02 0.009 24.3 7.1 19 129-147 65-83 (301)
63 PF08317 Spc7: Spc7 kinetochor 20.6 6.5E+02 0.014 23.0 8.6 27 125-151 200-226 (325)
64 PF14257 DUF4349: Domain of un 20.4 5.8E+02 0.013 22.3 9.9 123 28-169 64-193 (262)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=99.98 E-value=2.8e-33 Score=238.50 Aligned_cols=149 Identities=22% Similarity=0.342 Sum_probs=101.2
Q ss_pred CCcccceeEEecCcccccchhhhccchhhhhhhhhhcccCCCeeeEEecCCCCCCCccccccCCCChhhHHHHHHhhhcc
Q 041581 1 MGRGKLTMQLIEKEKARMITYQKRKRGLKKKAEEFSTLCGVPTCMIIYGPRLNNRPVDVEIWPKDEKDFMQVVNLYKDKA 80 (261)
Q Consensus 1 MgR~KI~ik~I~n~~~R~vTFsKRr~GL~KKA~ELSvLCdaeValIvfSp~gk~~~f~p~~wPs~~~~v~~vieRY~~~~ 80 (261)
|||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+|++|+|+ |++ .+|++|+++|....
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~----~~~-~~~~~v~~~~~~~~ 75 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFG----SSD-ESVDAVVDRFLNLT 75 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccC----Ccc-hhHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999998775 443 34999999999876
Q ss_pred ccccccccccchhhHHHHH-HHHH--------------HHHHHHHHHHHhhccc----cccccCCcCCCCCH-HHHHHHH
Q 041581 81 YSSVRGVKSLSLFDFFADR-KRKV--------------DENIAKTRKANYESLF----STDDWDEMINRFSI-DQLKQML 140 (261)
Q Consensus 81 ~~~~~~~k~~~~~~~~~~~-~~Kl--------------keel~kLrke~~e~~~----~~~~~ge~L~~Ls~-eEL~~Le 140 (261)
.... .++..+...+.... ...+ ..+...+.+....... .....++++.+++. .+|..++
T Consensus 76 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~ 154 (195)
T KOG0014|consen 76 EPSR-KKKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLE 154 (195)
T ss_pred hhhh-cccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchh
Confidence 5432 11222222222111 0011 0111111111110000 11246778888888 7888888
Q ss_pred HHHHHHHHHHHHHHH
Q 041581 141 VVFDEYIDVATRKLT 155 (261)
Q Consensus 141 ~~LE~~L~~ir~Ri~ 155 (261)
..|+..+..++....
T Consensus 155 ~~l~~~~~~~~~~~~ 169 (195)
T KOG0014|consen 155 SQLESSLHNSRSSKS 169 (195)
T ss_pred hHHHHhhcCCCCCCC
Confidence 888877766654433
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.97 E-value=1.3e-31 Score=195.88 Aligned_cols=74 Identities=31% Similarity=0.560 Sum_probs=69.7
Q ss_pred CcccceeEEecCcccccchhhhccchhhhhhhhhhcccCCCeeeEEecCCCCCCCccccccCCCChhhHHHHHHhhhccc
Q 041581 2 GRGKLTMQLIEKEKARMITYQKRKRGLKKKAEEFSTLCGVPTCMIIYGPRLNNRPVDVEIWPKDEKDFMQVVNLYKDKAY 81 (261)
Q Consensus 2 gR~KI~ik~I~n~~~R~vTFsKRr~GL~KKA~ELSvLCdaeValIvfSp~gk~~~f~p~~wPs~~~~v~~vieRY~~~~~ 81 (261)
||+||+|++|+|+.+|++||+|||.||||||+||||||||+||+|||||+|++|.|+ ++++++||+||...+.
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~-------s~s~~~vl~ry~~~~~ 73 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFS-------SPSMEKIIERYQKTSG 73 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEec-------CCCHHHHHHHHHhccc
Confidence 899999999999999999999999999999999999999999999999999988887 4568999999998765
Q ss_pred c
Q 041581 82 S 82 (261)
Q Consensus 82 ~ 82 (261)
.
T Consensus 74 ~ 74 (77)
T cd00265 74 S 74 (77)
T ss_pred c
Confidence 4
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.96 E-value=1.5e-29 Score=187.58 Aligned_cols=75 Identities=36% Similarity=0.646 Sum_probs=68.4
Q ss_pred CcccceeEEecCcccccchhhhccchhhhhhhhhhcccCCCeeeEEecCCCCCCCccccccCCCChhhHHHHHHhhhccc
Q 041581 2 GRGKLTMQLIEKEKARMITYQKRKRGLKKKAEEFSTLCGVPTCMIIYGPRLNNRPVDVEIWPKDEKDFMQVVNLYKDKAY 81 (261)
Q Consensus 2 gR~KI~ik~I~n~~~R~vTFsKRr~GL~KKA~ELSvLCdaeValIvfSp~gk~~~f~p~~wPs~~~~v~~vieRY~~~~~ 81 (261)
||+||+|++|+|+.+|++||+|||.||||||+||||||||+||+|||||+|+.+ .+||+. . +..++++|...+.
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~----~~~~~~-~-~~~~l~~~~~~~~ 74 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLY----VFWPSS-E-VEGVISRFEVLSA 74 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcc----eecCcH-H-HHHHHHHHhhcCH
Confidence 899999999999999999999999999999999999999999999999999874 457754 3 9999999998765
Q ss_pred c
Q 041581 82 S 82 (261)
Q Consensus 82 ~ 82 (261)
.
T Consensus 75 ~ 75 (83)
T cd00266 75 L 75 (83)
T ss_pred h
Confidence 4
No 4
>smart00432 MADS MADS domain.
Probab=99.95 E-value=5.4e-29 Score=172.13 Aligned_cols=57 Identities=35% Similarity=0.624 Sum_probs=55.5
Q ss_pred CcccceeEEecCcccccchhhhccchhhhhhhhhhcccCCCeeeEEecCCCCCCCcc
Q 041581 2 GRGKLTMQLIEKEKARMITYQKRKRGLKKKAEEFSTLCGVPTCMIIYGPRLNNRPVD 58 (261)
Q Consensus 2 gR~KI~ik~I~n~~~R~vTFsKRr~GL~KKA~ELSvLCdaeValIvfSp~gk~~~f~ 58 (261)
||+||+|++|+|+++|++||+|||.||||||+||||||||+||+|||||+|+.+.|+
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~ 57 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFA 57 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeecc
Confidence 899999999999999999999999999999999999999999999999999998775
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.94 E-value=4.8e-28 Score=167.52 Aligned_cols=57 Identities=37% Similarity=0.640 Sum_probs=54.8
Q ss_pred CcccceeEEecCcccccchhhhccchhhhhhhhhhcccCCCeeeEEecCCCCCCCcc
Q 041581 2 GRGKLTMQLIEKEKARMITYQKRKRGLKKKAEEFSTLCGVPTCMIIYGPRLNNRPVD 58 (261)
Q Consensus 2 gR~KI~ik~I~n~~~R~vTFsKRr~GL~KKA~ELSvLCdaeValIvfSp~gk~~~f~ 58 (261)
||+||+|++|+|+..|++||+|||.||||||+||||||||+||+|||||+|+++.|+
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~ 57 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFW 57 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCccccc
Confidence 899999999999999999999999999999999999999999999999999986654
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.91 E-value=5.1e-26 Score=152.43 Aligned_cols=49 Identities=43% Similarity=0.699 Sum_probs=43.7
Q ss_pred EEecCcccccchhhhccchhhhhhhhhhcccCCCeeeEEecCCCCCCCc
Q 041581 9 QLIEKEKARMITYQKRKRGLKKKAEEFSTLCGVPTCMIIYGPRLNNRPV 57 (261)
Q Consensus 9 k~I~n~~~R~vTFsKRr~GL~KKA~ELSvLCdaeValIvfSp~gk~~~f 57 (261)
|+|+|++.|++||+|||.||||||+|||+||||+||||||||+|++|.|
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f 49 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTF 49 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEE
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEe
Confidence 5899999999999999999999999999999999999999999996654
No 7
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.73 E-value=5.8e-19 Score=155.18 Aligned_cols=81 Identities=26% Similarity=0.349 Sum_probs=68.3
Q ss_pred CcccceeEEecCcccccchhhhccchhhhhhhhhhcccCCCeeeEEecCCCCCCCcc-ccccCCC-ChhhHHHHHHhhhc
Q 041581 2 GRGKLTMQLIEKEKARMITYQKRKRGLKKKAEEFSTLCGVPTCMIIYGPRLNNRPVD-VEIWPKD-EKDFMQVVNLYKDK 79 (261)
Q Consensus 2 gR~KI~ik~I~n~~~R~vTFsKRr~GL~KKA~ELSvLCdaeValIvfSp~gk~~~f~-p~~wPs~-~~~v~~vieRY~~~ 79 (261)
||+||+|++|+|+..|.|||||||.||||||+|||||+|.+|-|+|.|.+|.+|.|. |..=|-- +..=+++|..-.+.
T Consensus 63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s~~Gk~lIq~cLn~ 142 (338)
T KOG0015|consen 63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITSDEGKALIQACLNA 142 (338)
T ss_pred ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccchhhHHHHHHHhcC
Confidence 799999999999999999999999999999999999999999999999999999999 4332211 23346777777766
Q ss_pred ccc
Q 041581 80 AYS 82 (261)
Q Consensus 80 ~~~ 82 (261)
+..
T Consensus 143 pd~ 145 (338)
T KOG0015|consen 143 PDT 145 (338)
T ss_pred CCC
Confidence 543
No 8
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.37 E-value=1.9e-13 Score=125.65 Aligned_cols=58 Identities=26% Similarity=0.392 Sum_probs=57.2
Q ss_pred CCcccceeEEecCcccccchhhhccchhhhhhhhhhcccCCCeeeEEecCCCCCCCcc
Q 041581 1 MGRGKLTMQLIEKEKARMITYQKRKRGLKKKAEEFSTLCGVPTCMIIYGPRLNNRPVD 58 (261)
Q Consensus 1 MgR~KI~ik~I~n~~~R~vTFsKRr~GL~KKA~ELSvLCdaeValIvfSp~gk~~~f~ 58 (261)
|||+||.|..|+|+.+|.|||+||+.||+|||.||+||.|.+|.++|.|.+|+++.|+
T Consensus 81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~ 138 (412)
T COG5068 81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFT 138 (412)
T ss_pred cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeec
Confidence 7899999999999999999999999999999999999999999999999999999998
No 9
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=98.82 E-value=1.8e-08 Score=77.16 Aligned_cols=84 Identities=8% Similarity=0.066 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhHHHHhhch
Q 041581 93 FDFFADRKRKVDENIAKTRKANYESLFSTDDWDEMINRFSIDQLKQMLVVFDEYIDVATRKLTIM-RGQQQSCIAAADHH 171 (261)
Q Consensus 93 ~~~~~~~~~Klkeel~kLrke~~e~~~~~~~~ge~L~~Ls~eEL~~Le~~LE~~L~~ir~Ri~~l-~~~~~s~~~k~~~~ 171 (261)
...+..++.+++.++..|+...+. +.|++|++||++||..||..|+.++..||.|+..+ ..+.....++...
T Consensus 14 ~e~~~~e~~~L~~~~~~L~~~~R~------~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~- 86 (100)
T PF01486_consen 14 HEELQQEIAKLRKENESLQKELRH------LMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERE- 86 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc------cccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 356788889999999999888776 68999999999999999999999999999766655 5555555555443
Q ss_pred hHHhhccccccc
Q 041581 172 RDQALQMIPYNY 183 (261)
Q Consensus 172 ~~~~~~~l~~~~ 183 (261)
....|..|.-++
T Consensus 87 l~~en~~L~~~~ 98 (100)
T PF01486_consen 87 LEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHh
Confidence 344455555443
No 10
>PRK04098 sec-independent translocase; Provisional
Probab=87.24 E-value=0.53 Score=38.89 Aligned_cols=89 Identities=11% Similarity=0.165 Sum_probs=44.4
Q ss_pred CeeeEEecCCCCCCCccccccCCCChhhHHHHHHhhhccccccccccccchh---hHHHHHHHHHHHHHHHHHHHHhhcc
Q 041581 42 PTCMIIYGPRLNNRPVDVEIWPKDEKDFMQVVNLYKDKAYSSVRGVKSLSLF---DFFADRKRKVDENIAKTRKANYESL 118 (261)
Q Consensus 42 eValIvfSp~gk~~~f~p~~wPs~~~~v~~vieRY~~~~~~~~~~~k~~~~~---~~~~~~~~Klkeel~kLrke~~e~~ 118 (261)
=||||||+|. |+...+ .++-..+..|++....-+ ..++.+ .-+.++..+.++.+.....+.+
T Consensus 14 vVaLlvfGP~-KLP~~~--------r~lGk~ir~~K~~~~~~k---~~l~~Ei~~~elk~e~~k~k~~l~~~~~~l~--- 78 (158)
T PRK04098 14 VVAIIFLGPD-KLPQAM--------VDIAKFFKAVKKTINDAK---STLDKEINIEEIKEEALKYKKEFESAVESLK--- 78 (158)
T ss_pred HHHHhhcCch-HHHHHH--------HHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3789999995 543333 456666777776543211 111111 1122233333333333222221
Q ss_pred ccccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 041581 119 FSTDDWDEMINRFSIDQLKQMLVVFDEYIDVATRKLT 155 (261)
Q Consensus 119 ~~~~~~ge~L~~Ls~eEL~~Le~~LE~~L~~ir~Ri~ 155 (261)
..+++++|.++...+....+.+...+.
T Consensus 79 ----------~~~~~eel~~~~~~~~~~~~~~~~~~~ 105 (158)
T PRK04098 79 ----------KKLKFEELDDLKITAENEIKSIQDLLQ 105 (158)
T ss_pred ----------hccChHHHHHHhhhhhhcchhHHHHHh
Confidence 227888888887777665555544443
No 11
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=83.84 E-value=3.1 Score=28.66 Aligned_cols=33 Identities=12% Similarity=0.300 Sum_probs=28.8
Q ss_pred ccCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 041581 123 DWDEMINRFSIDQLKQMLVVFDEYIDVATRKLT 155 (261)
Q Consensus 123 ~~ge~L~~Ls~eEL~~Le~~LE~~L~~ir~Ri~ 155 (261)
..|++|+.||++||..-...|+.-+.+++.-+.
T Consensus 13 ~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 13 EIGEDLSLLSVEELEERIALLEAEIARLEAAIA 45 (59)
T ss_pred ccCCCchhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999988875444
No 12
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=72.68 E-value=0.55 Score=26.12 Aligned_cols=14 Identities=7% Similarity=0.085 Sum_probs=10.7
Q ss_pred eeeEEecCCCCCCC
Q 041581 43 TCMIIYGPRLNNRP 56 (261)
Q Consensus 43 ValIvfSp~gk~~~ 56 (261)
-.+.+|||+|+++.
T Consensus 3 ~~~t~FSp~Grl~Q 16 (23)
T PF10584_consen 3 RSITTFSPDGRLFQ 16 (23)
T ss_dssp SSTTSBBTTSSBHH
T ss_pred CCceeECCCCeEEe
Confidence 34678999999764
No 13
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=64.62 E-value=37 Score=28.40 Aligned_cols=31 Identities=13% Similarity=0.259 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 041581 130 RFSIDQLKQMLVVFDEYIDVATRKLTIMRGQ 160 (261)
Q Consensus 130 ~Ls~eEL~~Le~~LE~~L~~ir~Ri~~l~~~ 160 (261)
+-+.+.|.+|.+.+.+-.+...+|+..|.+-
T Consensus 78 DKDFDKL~EFVEIMKeMQkDMDEKMDvLiNi 108 (205)
T PF15079_consen 78 DKDFDKLHEFVEIMKEMQKDMDEKMDVLINI 108 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHhHHHhhhHHhhc
Confidence 3356677777777777777777788777543
No 14
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=63.38 E-value=27 Score=28.75 Aligned_cols=62 Identities=15% Similarity=0.201 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 041581 96 FADRKRKVDENIAKTRKANYESLFSTDDWDEMINRFSIDQLKQMLVVFDEYIDVATRKLTIMRGQ 160 (261)
Q Consensus 96 ~~~~~~Klkeel~kLrke~~e~~~~~~~~ge~L~~Ls~eEL~~Le~~LE~~L~~ir~Ri~~l~~~ 160 (261)
+..++..+++++..++.++...... +..-...++.+||......|+..+..+..|+..|...
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~e---L~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAE---LASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444555666665555544332211 3333467789999999999999999999999988763
No 15
>PRK01919 tatB sec-independent translocase; Provisional
Probab=55.84 E-value=11 Score=31.41 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041581 133 IDQLKQMLVVFDEYIDVATRKLTI 156 (261)
Q Consensus 133 ~eEL~~Le~~LE~~L~~ir~Ri~~ 156 (261)
++||..+...+++....+...+..
T Consensus 56 ~dElrk~~~~~e~~~~~v~~si~~ 79 (169)
T PRK01919 56 LDELRKMKTDFESAARDVENTIHD 79 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666555543
No 16
>PF14282 FlxA: FlxA-like protein
Probab=47.44 E-value=1.3e+02 Score=23.01 Aligned_cols=58 Identities=12% Similarity=0.217 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 041581 97 ADRKRKVDENIAKTRKANYESLFSTDDWDEMINRFSIDQLKQMLVVFDEYIDVATRKLTIMRGQQQ 162 (261)
Q Consensus 97 ~~~~~Klkeel~kLrke~~e~~~~~~~~ge~L~~Ls~eEL~~Le~~LE~~L~~ir~Ri~~l~~~~~ 162 (261)
...++.|+.++..|++++.+ +..+ .+|+.++-..-...|..-|..+...|..+..+..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~-------l~~~-~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~ 75 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQE-------LSQD-SDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQA 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHcc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888887754 2222 6678899988888888888888888887765544
No 17
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=43.34 E-value=1e+02 Score=24.64 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=24.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041581 128 INRFSIDQLKQMLVVFDEYIDVATRKLTIM 157 (261)
Q Consensus 128 L~~Ls~eEL~~Le~~LE~~L~~ir~Ri~~l 157 (261)
.+.|+.+.|..|...||+-...+...++-+
T Consensus 48 ye~Ms~~~l~~llkqLEkeK~~Le~qlk~~ 77 (129)
T PF15372_consen 48 YEQMSVESLNQLLKQLEKEKRSLENQLKDY 77 (129)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999888776555533
No 18
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=43.31 E-value=1.5e+02 Score=24.21 Aligned_cols=56 Identities=7% Similarity=0.088 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041581 95 FFADRKRKVDENIAKTRKANYESLFSTDDWDEMINRFSIDQLKQMLVVFDEYIDVATRKLTIM 157 (261)
Q Consensus 95 ~~~~~~~Klkeel~kLrke~~e~~~~~~~~ge~L~~Ls~eEL~~Le~~LE~~L~~ir~Ri~~l 157 (261)
.+...+..++.++..+...... +...-...+.+|...++.......+..+.|++.+
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~-------l~~~~~~vs~ee~~~~~~~~~~~~k~w~kRKri~ 168 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEK-------LRSGSKPVSPEEKEKLEKEYKKWRKEWKKRKRIC 168 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566666777777766665533 1223344889999999999999988887776654
No 19
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=43.25 E-value=83 Score=25.68 Aligned_cols=39 Identities=21% Similarity=0.393 Sum_probs=33.0
Q ss_pred CCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 041581 125 DEMINRFSIDQLKQMLVVFDEYIDVATRKLTIMRGQQQS 163 (261)
Q Consensus 125 ge~L~~Ls~eEL~~Le~~LE~~L~~ir~Ri~~l~~~~~s 163 (261)
+-+|..||+++|..|.+.+|.-+.-+..-+..|++-.-.
T Consensus 7 ~idltkLsleQL~~lk~q~dqEl~~lq~Sl~~L~~aq~k 45 (153)
T KOG3048|consen 7 GIDLTKLSLEQLGALKKQFDQELNFLQDSLNALKGAQTK 45 (153)
T ss_pred CCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999988888888755443
No 20
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=43.08 E-value=85 Score=19.88 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041581 132 SIDQLKQMLVVFDEYIDVATRKLTIM 157 (261)
Q Consensus 132 s~eEL~~Le~~LE~~L~~ir~Ri~~l 157 (261)
.++||++|.+.||.-++....-++.+
T Consensus 5 ~ieelkqll~rle~eirett~sl~ni 30 (46)
T PF08181_consen 5 KIEELKQLLWRLENEIRETTDSLRNI 30 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888899888888776655444433
No 21
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=42.39 E-value=1.4e+02 Score=28.74 Aligned_cols=77 Identities=5% Similarity=0.011 Sum_probs=41.0
Q ss_pred hHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhhccccccccCCcCCCCCHHHHHHHHHHHHHH
Q 041581 69 FMQVVNLYKDKAYSSVRGVKSLSLFDFFADRKRKVDENIAKTRKANYESLFSTDDWDEMINRFSIDQLKQMLVVFDEY 146 (261)
Q Consensus 69 v~~vieRY~~~~~~~~~~~k~~~~~~~~~~~~~Klkeel~kLrke~~e~~~~~~~~ge~L~~Ls~eEL~~Le~~LE~~ 146 (261)
++.+++.|........ ........+|+.+++.+++++++....+.............+-.+...++|.++...+...
T Consensus 140 ~n~l~~~yi~~~~~~~-~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 216 (498)
T TIGR03007 140 VQTLLTIFVEETLGSK-RQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAA 216 (498)
T ss_pred HHHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHH
Confidence 3556666877654322 1112345578888888898888887776654322211222222233445556655554433
No 22
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=40.42 E-value=1.2e+02 Score=25.17 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041581 132 SIDQLKQMLVVFDEYIDVATRKLTIM 157 (261)
Q Consensus 132 s~eEL~~Le~~LE~~L~~ir~Ri~~l 157 (261)
...++.++...+++.|+.|+..+..+
T Consensus 136 ~~~~i~e~IKd~de~L~~I~d~iK~I 161 (163)
T PF03233_consen 136 TEKLIEELIKDFDERLKEIRDKIKKI 161 (163)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47889999999999999999887654
No 23
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=40.04 E-value=28 Score=30.02 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=30.9
Q ss_pred hhhhhcccCCCeeeEEecCCC---CCCCccccccCCCChhhHHHHHHhhhc
Q 041581 32 AEEFSTLCGVPTCMIIYGPRL---NNRPVDVEIWPKDEKDFMQVVNLYKDK 79 (261)
Q Consensus 32 A~ELSvLCdaeValIvfSp~g---k~~~f~p~~wPs~~~~v~~vieRY~~~ 79 (261)
..|++|-||-++.|++.+|+. ....|| ..-.+.||..|+..
T Consensus 45 ~de~~trvGqqavvl~~~p~kp~~~f~vfG-------a~pL~~vv~~~~~~ 88 (214)
T PF10491_consen 45 IDEYTTRVGQQAVVLCCTPSKPNPVFKVFG-------AAPLENVVRNLKPV 88 (214)
T ss_pred HHHHHHhhhceeEEEEecCCCCCCceeeec-------chhHHHHHHHHHHH
Confidence 469999999999999999973 223344 45678888888753
No 24
>PF10044 Ret_tiss: Retinal tissue protein; InterPro: IPR018737 Rtp is a family of proteins of approximately 112 amino acids in length which is conserved from nematodes to humans. The proposed tertiary structure is of almost entirely alpha helix interrupted only by loops located at proline residues. Three sites in the protein sequence reveal two types of possible post-translation modification. A serine residue, at position 41, is a candidate for protein kinase C phosphorylation. Glycine residues at position 69 and 91 are probable sites for acetylation by covalent amide linkage of myristate via N-myristoyl transferase. Rtp is differentially expressed in the trout retina between parr and smolt developmental stages (smoltification). It is likely to be a house-keeping protein [].
Probab=37.52 E-value=91 Score=23.58 Aligned_cols=18 Identities=17% Similarity=0.484 Sum_probs=15.2
Q ss_pred ccccCCCChhhHHHHHHh
Q 041581 59 VEIWPKDEKDFMQVVNLY 76 (261)
Q Consensus 59 p~~wPs~~~~v~~vieRY 76 (261)
|+.||..-|+|..++...
T Consensus 12 P~~WPe~~PG~~ef~~~~ 29 (95)
T PF10044_consen 12 PELWPEQFPGVSEFATMS 29 (95)
T ss_pred cccCCCCCCCHHHHHhcc
Confidence 999999989998887643
No 25
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=37.47 E-value=35 Score=26.20 Aligned_cols=19 Identities=11% Similarity=0.312 Sum_probs=16.0
Q ss_pred CcCCCCCHHHHHHHHHHHH
Q 041581 126 EMINRFSIDQLKQMLVVFD 144 (261)
Q Consensus 126 e~L~~Ls~eEL~~Le~~LE 144 (261)
+.++.|+.+|+..|...+|
T Consensus 85 kRle~l~~eE~~~L~~eie 103 (104)
T PF11460_consen 85 KRLEELSPEELEALQAEIE 103 (104)
T ss_pred HHHHhCCHHHHHHHHHHhc
Confidence 4568899999999988876
No 26
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=35.61 E-value=37 Score=27.41 Aligned_cols=24 Identities=8% Similarity=0.016 Sum_probs=18.7
Q ss_pred hhhcccCCCeeeEEecCCCCCCCc
Q 041581 34 EFSTLCGVPTCMIIYGPRLNNRPV 57 (261)
Q Consensus 34 ELSvLCdaeValIvfSp~gk~~~f 57 (261)
=+.++|||||-++|-|-+.+-..|
T Consensus 58 L~tt~~dadvi~~v~~and~~s~f 81 (148)
T COG4917 58 LITTLQDADVIIYVHAANDPESRF 81 (148)
T ss_pred HHHHhhccceeeeeecccCccccC
Confidence 367899999999999987654334
No 27
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=34.74 E-value=56 Score=24.99 Aligned_cols=76 Identities=18% Similarity=0.121 Sum_probs=43.9
Q ss_pred CCcccceeEEecCcccccchhhhccchhhhhhhhhhccc----CCCeeeEEecCCCCCCCcc-ccccCCCChhhHHHHHH
Q 041581 1 MGRGKLTMQLIEKEKARMITYQKRKRGLKKKAEEFSTLC----GVPTCMIIYGPRLNNRPVD-VEIWPKDEKDFMQVVNL 75 (261)
Q Consensus 1 MgR~KI~ik~I~n~~~R~vTFsKRr~GL~KKA~ELSvLC----daeValIvfSp~gk~~~f~-p~~wPs~~~~v~~vieR 75 (261)
|||+|...++|-.. |+-.+-|+-+-++ =-+|.++.| ..-+++++-+.-|--|++. |..|-.- .--.+.+|.
T Consensus 1 MG~rr~krr~~ik~--~~~~L~k~FtCp~-Cghe~vs~ctvkk~~~~g~~~Cg~CGls~e~ev~~l~~~v-DvYs~wvDa 76 (104)
T COG4888 1 MGRRRRKRRKIIKR--RPQVLPKTFTCPR-CGHEKVSSCTVKKTVNIGTAVCGNCGLSFECEVPELSEPV-DVYSAWVDA 76 (104)
T ss_pred CCcccccccccCcc--cCccCCceEecCc-cCCeeeeEEEEEecCceeEEEcccCcceEEEeccccccch-hHHHHHHHH
Confidence 99999888876542 2222333333332 245666666 4457888888888766655 5555321 122457777
Q ss_pred hhhcc
Q 041581 76 YKDKA 80 (261)
Q Consensus 76 Y~~~~ 80 (261)
|....
T Consensus 77 y~eg~ 81 (104)
T COG4888 77 YLEGR 81 (104)
T ss_pred HHhcc
Confidence 76643
No 28
>PRK00182 tatB sec-independent translocase; Provisional
Probab=33.57 E-value=13 Score=30.79 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=21.0
Q ss_pred hhhcccCCCeeeEEecCCCCCCCccccccCCCChhhHHHHHHhhhc
Q 041581 34 EFSTLCGVPTCMIIYGPRLNNRPVDVEIWPKDEKDFMQVVNLYKDK 79 (261)
Q Consensus 34 ELSvLCdaeValIvfSp~gk~~~f~p~~wPs~~~~v~~vieRY~~~ 79 (261)
||-|++ =||||||+|. |+-+++ ..+...|..|++.
T Consensus 9 EllvIl--vIaLlVfGPe-rLP~~~--------r~lg~~ir~~R~~ 43 (160)
T PRK00182 9 EILLLL--IVGLIVIGPE-RLPRLI--------EDVRAALLAARTA 43 (160)
T ss_pred HHHHHH--HHHHHhcCch-HHHHHH--------HHHHHHHHHHHHH
Confidence 444444 3788999984 443333 4566666666654
No 29
>smart00782 PhnA_Zn_Ribbon PhnA Zinc-Ribbon. This protein family includes an uncharacterised member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterised phosphonoacetate hydrolase designated PhnA.
Probab=33.47 E-value=23 Score=23.16 Aligned_cols=22 Identities=27% Similarity=0.626 Sum_probs=18.1
Q ss_pred hhhhhhhhhcccCCCeeeEEec
Q 041581 28 LKKKAEEFSTLCGVPTCMIIYG 49 (261)
Q Consensus 28 L~KKA~ELSvLCdaeValIvfS 49 (261)
|.+.+..-+-||+++..|.+|-
T Consensus 2 L~~Rs~~kCELC~a~~~L~vy~ 23 (47)
T smart00782 2 LLARCESKCELCGSDSPLVVYA 23 (47)
T ss_pred hhHHcCCcccCcCCCCCceEEe
Confidence 5566677799999999998886
No 30
>PRK04654 sec-independent translocase; Provisional
Probab=32.40 E-value=15 Score=31.75 Aligned_cols=9 Identities=22% Similarity=0.892 Sum_probs=6.7
Q ss_pred eeeEEecCC
Q 041581 43 TCMIIYGPR 51 (261)
Q Consensus 43 ValIvfSp~ 51 (261)
|+||||+|.
T Consensus 15 VALlV~GPe 23 (214)
T PRK04654 15 VALVVLGPE 23 (214)
T ss_pred HHHHhcCch
Confidence 678888874
No 31
>KOG1510 consensus RNA polymerase II holoenzyme and mediator subcomplex, subunit SURB7/SRB7 [Transcription]
Probab=31.37 E-value=1.7e+02 Score=23.60 Aligned_cols=26 Identities=8% Similarity=0.107 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041581 133 IDQLKQMLVVFDEYIDVATRKLTIMR 158 (261)
Q Consensus 133 ~eEL~~Le~~LE~~L~~ir~Ri~~l~ 158 (261)
..||..+...=|..|..|.+++..+.
T Consensus 104 ~~el~~~v~~~e~Ll~~vq~~le~~a 129 (139)
T KOG1510|consen 104 ALELEELVSKGEKLLEQVQSLLEDIA 129 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777877777777664
No 32
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=30.92 E-value=1.3e+02 Score=19.91 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=20.9
Q ss_pred cCCCCCHHHHHHHHHHHHHH----HHHHHHHHHHh
Q 041581 127 MINRFSIDQLKQMLVVFDEY----IDVATRKLTIM 157 (261)
Q Consensus 127 ~L~~Ls~eEL~~Le~~LE~~----L~~ir~Ri~~l 157 (261)
.|..+|.+||++....|+.- +..+|.|....
T Consensus 4 fLk~ls~~eL~~rl~~LD~~ME~Eieelr~RY~~K 38 (49)
T PF11629_consen 4 FLKFLSYEELQQRLASLDPEMEQEIEELRQRYQAK 38 (49)
T ss_dssp GGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 46788999999888777654 55566666544
No 33
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=30.56 E-value=1.1e+02 Score=27.62 Aligned_cols=45 Identities=22% Similarity=0.200 Sum_probs=35.3
Q ss_pred cCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHh
Q 041581 124 WDEMINRFSIDQLKQMLVVFDEYIDVATRKLTIMRGQQQSCIAAA 168 (261)
Q Consensus 124 ~ge~L~~Ls~eEL~~Le~~LE~~L~~ir~Ri~~l~~~~~s~~~k~ 168 (261)
--+.+.+|+++||++|-..|-..+..|-.-+-....+.++....+
T Consensus 212 SrEeL~~Mt~~EL~qL~~~L~~qIq~vfeeLt~~vQEKDsLaSEl 256 (285)
T PF06937_consen 212 SREELNSMTLDELKQLNEKLLQQIQDVFEELTQQVQEKDSLASEL 256 (285)
T ss_pred CHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999998888888776666666666655553
No 34
>PF13082 DUF3931: Protein of unknown function (DUF3931)
Probab=30.10 E-value=20 Score=24.02 Aligned_cols=37 Identities=35% Similarity=0.459 Sum_probs=30.0
Q ss_pred ccceeEEecCcccccchhhhccchhhhhhhhhh--cccC
Q 041581 4 GKLTMQLIEKEKARMITYQKRKRGLKKKAEEFS--TLCG 40 (261)
Q Consensus 4 ~KI~ik~I~n~~~R~vTFsKRr~GL~KKA~ELS--vLCd 40 (261)
+|-.+--|.-++...-|||--+--.-.|.+|+| ||||
T Consensus 6 kkcnvisidgkkkksdtysypklvvenktyefssfvlcg 44 (66)
T PF13082_consen 6 KKCNVISIDGKKKKSDTYSYPKLVVENKTYEFSSFVLCG 44 (66)
T ss_pred ccccEEEeccccccCCcccCceEEEeCceEEEEEEEEEc
Confidence 455666778888888899999988999999998 5675
No 35
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=29.96 E-value=59 Score=24.54 Aligned_cols=78 Identities=15% Similarity=0.069 Sum_probs=39.3
Q ss_pred hhhhhcccCCCeeeEE-------ecCCCCCCCccccccCCCChhhHHHHHHhhhccccccccccccchhhHHHHHHHHHH
Q 041581 32 AEEFSTLCGVPTCMII-------YGPRLNNRPVDVEIWPKDEKDFMQVVNLYKDKAYSSVRGVKSLSLFDFFADRKRKVD 104 (261)
Q Consensus 32 A~ELSvLCdaeValIv-------fSp~gk~~~f~p~~wPs~~~~v~~vieRY~~~~~~~~~~~k~~~~~~~~~~~~~Klk 104 (261)
..|||..||++...|. +.|.+.. +..|=.+ ...-.++.+......+-.-.......--.+.+++..++
T Consensus 10 ~~Elc~~~gi~~~~l~eLve~GlIep~~~~----~~~~~F~-~~~l~r~~~a~rL~~dl~in~~gialvl~LLd~i~~Lr 84 (101)
T PRK10265 10 ITEFCLHTGVSEEELNEIVGLGVIEPREIQ----ETTWVFD-DHAAIVVQRAVRLRHELALDWPGIAVALTLLDEIAHLK 84 (101)
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCeecCCCC----cccceEC-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 4699999999877654 3343221 2334332 22234455554443321000001112223667777788
Q ss_pred HHHHHHHHHH
Q 041581 105 ENIAKTRKAN 114 (261)
Q Consensus 105 eel~kLrke~ 114 (261)
.++..+++..
T Consensus 85 ~el~~L~~~l 94 (101)
T PRK10265 85 QENRLLRQRL 94 (101)
T ss_pred HHHHHHHHHH
Confidence 8887777655
No 36
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=29.84 E-value=50 Score=28.29 Aligned_cols=29 Identities=10% Similarity=0.311 Sum_probs=21.1
Q ss_pred ccCCCeeeEEecCCCCCCCccccccCCCChhhHHHHHHhhhc
Q 041581 38 LCGVPTCMIIYGPRLNNRPVDVEIWPKDEKDFMQVVNLYKDK 79 (261)
Q Consensus 38 LCdaeValIvfSp~gk~~~f~p~~wPs~~~~v~~vieRY~~~ 79 (261)
--||.+||+|||.+. ..+++.+++=|.+.
T Consensus 90 yrgaqa~vLVFSTTD-------------r~SFea~~~w~~kv 118 (246)
T KOG4252|consen 90 YRGAQASVLVFSTTD-------------RYSFEATLEWYNKV 118 (246)
T ss_pred hccccceEEEEeccc-------------HHHHHHHHHHHHHH
Confidence 358999999999974 34566677766654
No 37
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=28.81 E-value=3e+02 Score=25.30 Aligned_cols=28 Identities=4% Similarity=0.084 Sum_probs=21.9
Q ss_pred CCcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 041581 125 DEMINRFSIDQLKQMLVVFDEYIDVATR 152 (261)
Q Consensus 125 ge~L~~Ls~eEL~~Le~~LE~~L~~ir~ 152 (261)
-..+++++.++|..+...|......+..
T Consensus 195 ~~e~~~~d~~eL~~lk~~l~~~~~ei~~ 222 (312)
T smart00787 195 EDELEDCDPTELDRAKEKLKKLLQEIMI 222 (312)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999888877766643
No 38
>PRK10132 hypothetical protein; Provisional
Probab=28.76 E-value=1.9e+02 Score=22.26 Aligned_cols=55 Identities=2% Similarity=-0.054 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041581 97 ADRKRKVDENIAKTRKANYESLFSTDDWDEMINRFSIDQLKQMLVVFDEYIDVATRKLTIMR 158 (261)
Q Consensus 97 ~~~~~Klkeel~kLrke~~e~~~~~~~~ge~L~~Ls~eEL~~Le~~LE~~L~~ir~Ri~~l~ 158 (261)
...++++..+++.|-....+. -.+..+-+-+++..+...++..|...+.++....
T Consensus 11 ~~q~e~L~~Dl~~L~~~le~l-------l~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~~~~ 65 (108)
T PRK10132 11 DDGVQDIQNDVNQLADSLESV-------LKSWGSDAKGEAEAARRKAQALLKETRARMHGRT 65 (108)
T ss_pred hhHHHHHHHHHHHHHHHHHHH-------HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 344556666666655444321 1233455788899999999999999998877543
No 39
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=28.74 E-value=1.7e+02 Score=26.58 Aligned_cols=25 Identities=12% Similarity=0.316 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccc
Q 041581 96 FADRKRKVDENIAKTRKANYESLFS 120 (261)
Q Consensus 96 ~~~~~~Klkeel~kLrke~~e~~~~ 120 (261)
...+++.++.++++|+|+..+++|+
T Consensus 16 aLqKIqelE~QldkLkKE~qQrQfQ 40 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLKKERQQRQFQ 40 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456667777777777776655543
No 40
>PF11944 DUF3461: Protein of unknown function (DUF3461); InterPro: IPR020911 This entry describes proteins of unknown function.
Probab=28.44 E-value=84 Score=24.88 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 041581 133 IDQLKQMLVVFDEYIDVATRKLTIM 157 (261)
Q Consensus 133 ~eEL~~Le~~LE~~L~~ir~Ri~~l 157 (261)
++||..||..+-+++..|+++++.|
T Consensus 101 L~dL~HLE~Vv~~KIaEIe~dlekL 125 (125)
T PF11944_consen 101 LDDLRHLEKVVNSKIAEIERDLEKL 125 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7899999999999999999887653
No 41
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=28.22 E-value=2.5e+02 Score=27.41 Aligned_cols=37 Identities=8% Similarity=-0.090 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 041581 129 NRFSIDQLKQMLVVFDEYIDVATRKLTIMRGQQQSCI 165 (261)
Q Consensus 129 ~~Ls~eEL~~Le~~LE~~L~~ir~Ri~~l~~~~~s~~ 165 (261)
+..+++++.++...+...+..++.++..+..+.....
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (525)
T TIGR02231 122 NEPDLKEWFQAFDFNGSEIERLLTEDREAERRIRELE 158 (525)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999988888887777666655554444333
No 42
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=27.42 E-value=3.2e+02 Score=23.10 Aligned_cols=33 Identities=3% Similarity=0.186 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 041581 129 NRFSIDQLKQMLVVFDEYIDVATRKLTIMRGQQ 161 (261)
Q Consensus 129 ~~Ls~eEL~~Le~~LE~~L~~ir~Ri~~l~~~~ 161 (261)
..|+.+|++.=.+.|.+-...-+.|+..++...
T Consensus 114 s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~ 146 (201)
T KOG4603|consen 114 SALTTEEMQEEIQELKKEVAGYRERLKNIKAGT 146 (201)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356888888888888887777788887776433
No 43
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=26.38 E-value=2.5e+02 Score=28.78 Aligned_cols=76 Identities=9% Similarity=0.013 Sum_probs=40.7
Q ss_pred HHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhhccccccccCCcCCCCCHHHHHHHHHHHHHH
Q 041581 70 MQVVNLYKDKAYSSVRGVKSLSLFDFFADRKRKVDENIAKTRKANYESLFSTDDWDEMINRFSIDQLKQMLVVFDEY 146 (261)
Q Consensus 70 ~~vieRY~~~~~~~~~~~k~~~~~~~~~~~~~Klkeel~kLrke~~e~~~~~~~~ge~L~~Ls~eEL~~Le~~LE~~ 146 (261)
..+++.|.......+. .......+|+.+++..+++++.....+..+........+..-..+...+|.++...|...
T Consensus 174 N~la~~Y~~~~~~~k~-~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a 249 (754)
T TIGR01005 174 DAIAAAYIAGQGAAKS-ESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRA 249 (754)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHH
Confidence 4566666654332210 011223467777788888777766555533322222333333445557888887776654
No 44
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=26.11 E-value=49 Score=31.21 Aligned_cols=43 Identities=7% Similarity=-0.066 Sum_probs=0.0
Q ss_pred hhcccCCCeeeEEecCCCCCCCcc-ccccCCCChhhHHHHHHhhhcc
Q 041581 35 FSTLCGVPTCMIIYGPRLNNRPVD-VEIWPKDEKDFMQVVNLYKDKA 80 (261)
Q Consensus 35 LSvLCdaeValIvfSp~gk~~~f~-p~~wPs~~~~v~~vieRY~~~~ 80 (261)
|||+||-+|.-.+.-.+..+|.|. |-++ -.++++++..|...+
T Consensus 369 lSV~~~~~V~HClIy~tatG~GFa~pyn~---y~tlk~lV~hY~h~S 412 (464)
T KOG4637|consen 369 LSVVHDGEVKHCLIYQTATGFGFAEPYNL---YSTLKELVLHYQHTS 412 (464)
T ss_pred EEEEECCceeeeEEeeccccccccchhHH---HHHHHHHHHHHhhhh
No 45
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=25.92 E-value=3e+02 Score=23.73 Aligned_cols=80 Identities=16% Similarity=0.215 Sum_probs=40.9
Q ss_pred hhhHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhhccccccccCCcCCCCCHHHHHHHHHHHHHH
Q 041581 67 KDFMQVVNLYKDKAYSSVRGVKSLSLFDFFADRKRKVDENIAKTRKANYESLFSTDDWDEMINRFSIDQLKQMLVVFDEY 146 (261)
Q Consensus 67 ~~v~~vieRY~~~~~~~~~~~k~~~~~~~~~~~~~Klkeel~kLrke~~e~~~~~~~~ge~L~~Ls~eEL~~Le~~LE~~ 146 (261)
..+..+++.|.+...... +.....-....+.|+...++.-|+++... +..+++.. -..++.+...++..
T Consensus 22 ~~v~~~~~~Y~~~vvTee----~ik~aKk~rA~LNKl~k~id~~RK~ikk~------~~~P~~~F-e~~~K~l~~~i~~~ 90 (215)
T PF07083_consen 22 AEVDEAVEKYKGYVVTEE----NIKDAKKDRAELNKLKKAIDDKRKEIKKE------YSKPIKEF-EAKIKELIAPIDEA 90 (215)
T ss_pred HHHHHHHHHhCCcccChh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhchHHHH-HHHHHHHHHHHHHH
Confidence 467788889977644321 11112235566777777777777766331 33333332 23344444444444
Q ss_pred HHHHHHHHHHh
Q 041581 147 IDVATRKLTIM 157 (261)
Q Consensus 147 L~~ir~Ri~~l 157 (261)
...|+..+..+
T Consensus 91 ~~~I~~~ik~~ 101 (215)
T PF07083_consen 91 SDKIDEQIKEF 101 (215)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 46
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=25.83 E-value=1e+02 Score=22.62 Aligned_cols=40 Identities=10% Similarity=0.090 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhhccccccccCCcCCCCCHHHHHHHHHHHHHHHHH
Q 041581 102 KVDENIAKTRKANYESLFSTDDWDEMINRFSIDQLKQMLVVFDEYIDV 149 (261)
Q Consensus 102 Klkeel~kLrke~~e~~~~~~~~ge~L~~Ls~eEL~~Le~~LE~~L~~ 149 (261)
|+++.+.+|+.+..+ ..++++-.-+.|..|...++..+..
T Consensus 1 kL~~~L~~L~~eL~~--------~~~ld~~~~~~L~~l~~dIe~~L~~ 40 (85)
T PF14357_consen 1 KLQELLEKLHQELEQ--------NPPLDEETRAELSSLDDDIEAQLAE 40 (85)
T ss_pred CHHHHHHHHHHHHhc--------CCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 356667777766643 3456666666677776666666654
No 47
>PRK03100 sec-independent translocase; Provisional
Probab=25.11 E-value=25 Score=28.34 Aligned_cols=10 Identities=30% Similarity=0.710 Sum_probs=7.5
Q ss_pred CeeeEEecCC
Q 041581 42 PTCMIIYGPR 51 (261)
Q Consensus 42 eValIvfSp~ 51 (261)
=||||||+|.
T Consensus 15 vVaLvv~GPk 24 (136)
T PRK03100 15 VAGLVILGPE 24 (136)
T ss_pred HHHHhhcCch
Confidence 3678888884
No 48
>PRK01371 sec-independent translocase; Provisional
Probab=25.00 E-value=70 Score=25.86 Aligned_cols=10 Identities=20% Similarity=0.796 Sum_probs=7.4
Q ss_pred CeeeEEecCC
Q 041581 42 PTCMIIYGPR 51 (261)
Q Consensus 42 eValIvfSp~ 51 (261)
=|+||||+|.
T Consensus 14 vVallvfGPe 23 (137)
T PRK01371 14 VLAVLVFGPD 23 (137)
T ss_pred HHHhheeCch
Confidence 3678888884
No 49
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=23.85 E-value=36 Score=26.41 Aligned_cols=37 Identities=14% Similarity=0.157 Sum_probs=27.9
Q ss_pred ccchhhhccchhhhh---------hhhhhcccCCCeeeEEecCCCC
Q 041581 17 RMITYQKRKRGLKKK---------AEEFSTLCGVPTCMIIYGPRLN 53 (261)
Q Consensus 17 R~vTFsKRr~GL~KK---------A~ELSvLCdaeValIvfSp~gk 53 (261)
+..-||+-|+-|.+| +-|+.+=||.|+-+++..+.|.
T Consensus 50 ~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~Dall~~V~q~gg 95 (111)
T COG0139 50 EAHYYSRSRQELWTKGETSGHTQKVVEIRLDCDGDALLLLVEQIGG 95 (111)
T ss_pred eEEEEEcchhhheccccccCceEEEEEEEcCCCCCEEEEEEEeCCC
Confidence 344456666656554 6789999999999999999654
No 50
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=23.66 E-value=2.8e+02 Score=19.73 Aligned_cols=29 Identities=10% Similarity=0.202 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHH---HHHHHhhh
Q 041581 131 FSIDQLKQMLVVFDEYIDVAT---RKLTIMRG 159 (261)
Q Consensus 131 Ls~eEL~~Le~~LE~~L~~ir---~Ri~~l~~ 159 (261)
||++.|..|+..+..++..|. .++..|+.
T Consensus 1 M~~E~l~~LE~ki~~aveti~~Lq~e~eeLke 32 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIALLQMENEELKE 32 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777776653 44555544
No 51
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.59 E-value=5e+02 Score=22.89 Aligned_cols=64 Identities=9% Similarity=0.072 Sum_probs=30.2
Q ss_pred hhhHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhhccccccccCCcCCCCCHHHHHHHHHHHHH
Q 041581 67 KDFMQVVNLYKDKAYSSVRGVKSLSLFDFFADRKRKVDENIAKTRKANYESLFSTDDWDEMINRFSIDQLKQMLVVFDE 145 (261)
Q Consensus 67 ~~v~~vieRY~~~~~~~~~~~k~~~~~~~~~~~~~Klkeel~kLrke~~e~~~~~~~~ge~L~~Ls~eEL~~Le~~LE~ 145 (261)
..++.|.+++..+..... .+-+ ..-|+.+|+|||+--.+...| +-+.++.+ -.-|...-..+|.
T Consensus 22 ~~F~~i~~K~~~~~n~~Q--------KEK~---E~DLKkEIKKLQR~RdQIK~W--~~~~diKd--k~~L~e~Rk~IE~ 85 (233)
T PF04065_consen 22 EEFDEIYEKVESATNQNQ--------KEKL---EADLKKEIKKLQRLRDQIKTW--LSSNDIKD--KKKLLENRKLIEE 85 (233)
T ss_pred HHHHHHHHHHHcccCcch--------HHHH---HHHHHHHHHHHHHHHHHHHHH--ccCccccc--HHHHHHHHHHHHH
Confidence 345677777776433211 1112 234666777776644444333 22344553 3334444444443
No 52
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=22.73 E-value=40 Score=30.82 Aligned_cols=15 Identities=7% Similarity=0.244 Sum_probs=12.4
Q ss_pred hhhHHHHHHhhhccc
Q 041581 67 KDFMQVVNLYKDKAY 81 (261)
Q Consensus 67 ~~v~~vieRY~~~~~ 81 (261)
|+|+.|++.|-+...
T Consensus 35 PeMK~Vme~F~rqTs 49 (299)
T PF02009_consen 35 PEMKSVMENFDRQTS 49 (299)
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999986543
No 53
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=22.51 E-value=2.6e+02 Score=20.41 Aligned_cols=32 Identities=13% Similarity=0.032 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 041581 129 NRFSIDQLKQMLVVFDEYIDVATRKLTIMRGQ 160 (261)
Q Consensus 129 ~~Ls~eEL~~Le~~LE~~L~~ir~Ri~~l~~~ 160 (261)
.+.+-+....+...++..+..++.+......+
T Consensus 22 ~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~ 53 (94)
T PF05957_consen 22 ADLAGEKADEARDRAEEALDDARDRAEDAADQ 53 (94)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466777888888888888888777765443
No 54
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=22.21 E-value=27 Score=25.26 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=28.1
Q ss_pred cccchhhhccchhhhh---------hhhhhcccCCCeeeEEecCCCC
Q 041581 16 ARMITYQKRKRGLKKK---------AEEFSTLCGVPTCMIIYGPRLN 53 (261)
Q Consensus 16 ~R~vTFsKRr~GL~KK---------A~ELSvLCdaeValIvfSp~gk 53 (261)
.+-+-||+-|++|..| +.|+.+=||.|+-++..-|.|.
T Consensus 17 g~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G~ 63 (75)
T PF01502_consen 17 GRATYYSRSRNRLWRKGETSGNTQKVVEIRLDCDGDALLFKVEQVGP 63 (75)
T ss_dssp SB-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-
T ss_pred CcEEEEEccCCcEeeEECCCCCEEEEEEEEecCCCCeEEEEEEeCCC
Confidence 3445577778777665 5689999999999999999875
No 55
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=21.83 E-value=3.8e+02 Score=20.63 Aligned_cols=33 Identities=9% Similarity=0.054 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 041581 129 NRFSIDQLKQMLVVFDEYIDVATRKLTIMRGQQ 161 (261)
Q Consensus 129 ~~Ls~eEL~~Le~~LE~~L~~ir~Ri~~l~~~~ 161 (261)
.+.+-+++..|...++..|+.+|.|+.......
T Consensus 32 g~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v 64 (104)
T COG4575 32 GSLAGDEAEELRSKAESALKEARDRLGDTGDAV 64 (104)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 566889999999999999999999998775433
No 56
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.50 E-value=3.9e+02 Score=24.04 Aligned_cols=26 Identities=8% Similarity=0.207 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041581 133 IDQLKQMLVVFDEYIDVATRKLTIMR 158 (261)
Q Consensus 133 ~eEL~~Le~~LE~~L~~ir~Ri~~l~ 158 (261)
-.++..|+..++.....|+.|-+.|.
T Consensus 79 ~~eik~l~~eI~~~~~~I~~r~~~l~ 104 (265)
T COG3883 79 KAEIKKLQKEIAELKENIVERQELLK 104 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777767766665554
No 57
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=20.97 E-value=62 Score=23.48 Aligned_cols=16 Identities=31% Similarity=0.659 Sum_probs=12.6
Q ss_pred hhhhhcccCCCeeeEE
Q 041581 32 AEEFSTLCGVPTCMII 47 (261)
Q Consensus 32 A~ELSvLCdaeValIv 47 (261)
..|||..|+++.+.|.
T Consensus 3 ~~e~~~~~~i~~~~l~ 18 (84)
T PF13591_consen 3 LEEFCEACGIEPEFLR 18 (84)
T ss_pred HHHHHHHHCcCHHHHH
Confidence 4689999999877664
No 58
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=20.91 E-value=51 Score=19.64 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=16.6
Q ss_pred hhhcccCCCeeeEEecCCCCCCCc
Q 041581 34 EFSTLCGVPTCMIIYGPRLNNRPV 57 (261)
Q Consensus 34 ELSvLCdaeValIvfSp~gk~~~f 57 (261)
-||--||+-|-+-||...|....|
T Consensus 2 hlcpkcgvgvl~pvy~~kgeikvf 25 (36)
T PF09151_consen 2 HLCPKCGVGVLEPVYNQKGEIKVF 25 (36)
T ss_dssp -B-TTTSSSBEEEEE-TTS-EEEE
T ss_pred ccCCccCceEEEEeecCCCcEEEE
Confidence 377889999999999998875444
No 59
>COG5570 Uncharacterized small protein [Function unknown]
Probab=20.88 E-value=2.7e+02 Score=18.68 Aligned_cols=44 Identities=14% Similarity=0.165 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHhhccccccccCCcCCCCCHHHHHHHHHHHHHHHH
Q 041581 100 KRKVDENIAKTRKANYESLFSTDDWDEMINRFSIDQLKQMLVVFDEYID 148 (261)
Q Consensus 100 ~~Klkeel~kLrke~~e~~~~~~~~ge~L~~Ls~eEL~~Le~~LE~~L~ 148 (261)
+..|+.+-..+.+++.+. +-..+.+++-+.+|+.-+-.|.+.+.
T Consensus 7 l~eL~kkHg~le~ei~ea-----~n~Ps~dd~~i~eLKRrKL~lKeeIE 50 (57)
T COG5570 7 LAELEKKHGNLEREIQEA-----MNSPSSDDLAIRELKRRKLRLKEEIE 50 (57)
T ss_pred HHHHHHhhchHHHHHHHH-----hcCCCcchHHHHHHHHHHHHHHHHHH
Confidence 333444444444555443 23466777777777665444444443
No 60
>PF10666 Phage_Gp14: Phage protein Gp14; InterPro: IPR018923 This Listeria phage Gp14 protein family is of unknown function but is expressed from within a cluster of tail- and base plate genes [].
Probab=20.82 E-value=3.6e+02 Score=21.55 Aligned_cols=44 Identities=14% Similarity=0.173 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccCCcCCCCCHHHHHHHHHHHHHHHHH
Q 041581 96 FADRKRKVDENIAKTRKANYESLFSTDDWDEMINRFSIDQLKQMLVVFDEYIDV 149 (261)
Q Consensus 96 ~~~~~~Klkeel~kLrke~~e~~~~~~~~ge~L~~Ls~eEL~~Le~~LE~~L~~ 149 (261)
|.+.-.|.+++++++.+.+- +..+.||.+++..|+.....+++.
T Consensus 37 ~~e~~~kykkk~e~l~k~~i----------d~~~EmS~e~~~aLe~~~re~L~e 80 (140)
T PF10666_consen 37 WIEADEKYKKKAEKLNKYNI----------DFDREMSSEEYRALEEQQREALKE 80 (140)
T ss_pred HHHHHHHHHHHHHHhhhhcc----------cchhhcCHHHHHHHHHHHHHHHHH
Confidence 44455566667777766541 223678899998888776666643
No 61
>PRK13677 hypothetical protein; Provisional
Probab=20.80 E-value=1.5e+02 Score=23.44 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041581 133 IDQLKQMLVVFDEYIDVATRKLTI 156 (261)
Q Consensus 133 ~eEL~~Le~~LE~~L~~ir~Ri~~ 156 (261)
++||..||..+-.++..|.+.++.
T Consensus 101 L~dLrHLE~Vv~~KIaEIe~dLek 124 (125)
T PRK13677 101 LDDLRHLESVVANKISEIEADLEK 124 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 789999999999999888887764
No 62
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=20.59 E-value=4.1e+02 Score=24.34 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=7.8
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 041581 129 NRFSIDQLKQMLVVFDEYI 147 (261)
Q Consensus 129 ~~Ls~eEL~~Le~~LE~~L 147 (261)
..||..+|..-...+++++
T Consensus 65 ~~Ms~~ql~~~~~k~~~si 83 (301)
T PF06120_consen 65 KEMSSTQLRANIAKAEESI 83 (301)
T ss_pred HhcCHHHHHHHHHHHHHHH
Confidence 3344444444444333333
No 63
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=20.57 E-value=6.5e+02 Score=22.95 Aligned_cols=27 Identities=15% Similarity=0.116 Sum_probs=20.1
Q ss_pred CCcCCCCCHHHHHHHHHHHHHHHHHHH
Q 041581 125 DEMINRFSIDQLKQMLVVFDEYIDVAT 151 (261)
Q Consensus 125 ge~L~~Ls~eEL~~Le~~LE~~L~~ir 151 (261)
-..++.++.++|..+...|...-..|.
T Consensus 200 ~~e~~~~D~~eL~~lr~eL~~~~~~i~ 226 (325)
T PF08317_consen 200 VEEIESCDQEELEALRQELAEQKEEIE 226 (325)
T ss_pred HhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 344788899999999888877655543
No 64
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=20.43 E-value=5.8e+02 Score=22.27 Aligned_cols=123 Identities=11% Similarity=0.120 Sum_probs=61.2
Q ss_pred hhhhhhhhhcccCCCeeeEEecCC--CCCCCcc--ccccCCCChhhHHHHHHhhhccccccccccccchhh-H--HHHHH
Q 041581 28 LKKKAEEFSTLCGVPTCMIIYGPR--LNNRPVD--VEIWPKDEKDFMQVVNLYKDKAYSSVRGVKSLSLFD-F--FADRK 100 (261)
Q Consensus 28 L~KKA~ELSvLCdaeValIvfSp~--gk~~~f~--p~~wPs~~~~v~~vieRY~~~~~~~~~~~k~~~~~~-~--~~~~~ 100 (261)
-.++..+++.-.|..|+-.-.+.+ +.....+ .-.-| ...++.+++................|... | .+.++
T Consensus 64 a~~~i~~~~~~~gG~i~~~~~~~~~~~~~~~~~~ltiRVP--~~~~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D~~arl 141 (262)
T PF14257_consen 64 AVKKIENLVESYGGYIESSSSSSSGGSDDERSASLTIRVP--ADKFDSFLDELSELGKVTSRNISSEDVTEQYVDLEARL 141 (262)
T ss_pred HHHHHHHHHHHcCCEEEEEeeecccCCCCcceEEEEEEEC--HHHHHHHHHHHhccCceeeeeccccchHHHHHHHHHHH
Confidence 345556666666665555554411 1111111 11234 35788888888765422211112233332 2 33444
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Q 041581 101 RKVDENIAKTRKANYESLFSTDDWDEMINRFSIDQLKQMLVVFDEYIDVATRKLTIMRGQQQSCIAAAD 169 (261)
Q Consensus 101 ~Klkeel~kLrke~~e~~~~~~~~ge~L~~Ls~eEL~~Le~~LE~~L~~ir~Ri~~l~~~~~s~~~k~~ 169 (261)
+.++.+.+++++-... -+ +++|+..++ ..|..|+..|+.+.++.......+.
T Consensus 142 ~~l~~~~~rl~~ll~k-----------a~--~~~d~l~ie----~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 142 KNLEAEEERLLELLEK-----------AK--TVEDLLEIE----RELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHh-----------cC--CHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444444444432211 11 688888765 4555677777777766665555544
Done!