Query 041581
Match_columns 261
No_of_seqs 207 out of 1342
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 14:33:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041581.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041581hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 2.4E-36 8.4E-41 218.5 1.0 74 2-82 1-74 (77)
2 3p57_A Myocyte-specific enhanc 100.0 4.9E-36 1.7E-40 222.1 1.5 75 2-83 1-75 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 1.2E-34 4.3E-39 218.1 0.0 72 1-79 16-87 (100)
4 1hbx_A SRF, serum response fac 100.0 2.2E-34 7.5E-39 214.1 -1.6 71 1-78 10-80 (92)
5 1k6o_B SRF, serum response fac 100.0 7.8E-34 2.7E-38 215.1 -1.2 70 1-77 9-78 (103)
6 1g6u_A Domain swapped dimer; d 70.1 10 0.00035 23.0 4.7 30 129-158 15-47 (48)
7 3he5_A Synzip1; heterodimeric 66.8 19 0.00065 21.9 5.9 42 95-155 7-48 (49)
8 2rpa_A Katanin P60 ATPase-cont 56.0 4.8 0.00016 28.3 1.6 58 29-111 16-73 (78)
9 2l5g_B Putative uncharacterize 55.0 26 0.0009 21.4 4.6 32 130-161 1-32 (42)
10 3nrf_A APAG protein; structura 46.2 4.2 0.00014 30.2 -0.0 40 11-55 21-60 (106)
11 3mq9_A Bone marrow stromal ant 43.4 1.3E+02 0.0045 27.2 9.8 37 136-172 427-463 (471)
12 3twe_A Alpha4H; unknown functi 34.7 55 0.0019 17.5 3.6 20 96-115 6-25 (27)
13 2l16_A SEC-independent protein 34.7 1.8 6.2E-05 30.5 -3.4 29 43-80 16-44 (78)
14 1p9i_A Cortexillin I/GCN4 hybr 30.8 61 0.0021 17.8 3.1 24 134-157 2-25 (31)
15 1dd4_C 50S ribosomal protein L 25.5 37 0.0013 20.5 1.8 23 125-147 7-29 (40)
16 3tso_C RAB11 family-interactin 23.4 1.8E+02 0.0063 19.9 6.1 38 128-165 11-48 (75)
17 1m1j_C Fibrinogen gamma chain; 23.3 1.8E+02 0.006 26.6 6.8 12 68-79 24-35 (409)
18 4a17_T RPL24, 60S ribosomal pr 22.8 47 0.0016 26.3 2.5 83 34-131 6-92 (158)
19 1j1d_C Troponin I, TNI; THIN f 22.7 2.6E+02 0.0088 21.3 8.3 26 126-151 53-78 (133)
20 1gmj_A ATPase inhibitor; coile 22.2 2.1E+02 0.0072 20.1 7.0 13 102-114 37-49 (84)
21 1j1d_B Troponin T, TNT; THIN f 22.1 2.2E+02 0.0074 20.9 5.9 29 127-155 38-67 (106)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=2.4e-36 Score=218.49 Aligned_cols=74 Identities=32% Similarity=0.465 Sum_probs=68.5
Q ss_pred CcccceeEEecCcccccchhhhccchhhhhhhhhhcccCCCeeeEEecCCCCCCCccccccCCCChhhHHHHHHhhhccc
Q 041581 2 GRGKLTMQLIEKEKARMITYQKRKRGLKKKAEEFSTLCGVPTCMIIYGPRLNNRPVDVEIWPKDEKDFMQVVNLYKDKAY 81 (261)
Q Consensus 2 gR~KI~ik~I~n~~~R~vTFsKRr~GL~KKA~ELSvLCdaeValIvfSp~gk~~~f~p~~wPs~~~~v~~vieRY~~~~~ 81 (261)
||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+||+|+|+ +++++.||+||...+.
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~-------s~~~~~il~ry~~~~~ 73 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYA-------STDMDKVLLKYTEYNE 73 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEE-------SSCHHHHHHHHHHC--
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCC-------CCCHHHHHHHHHhccC
Confidence 899999999999999999999999999999999999999999999999999998887 5689999999998764
Q ss_pred c
Q 041581 82 S 82 (261)
Q Consensus 82 ~ 82 (261)
+
T Consensus 74 ~ 74 (77)
T 1egw_A 74 P 74 (77)
T ss_dssp -
T ss_pred C
Confidence 3
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=4.9e-36 Score=222.14 Aligned_cols=75 Identities=32% Similarity=0.458 Sum_probs=71.0
Q ss_pred CcccceeEEecCcccccchhhhccchhhhhhhhhhcccCCCeeeEEecCCCCCCCccccccCCCChhhHHHHHHhhhccc
Q 041581 2 GRGKLTMQLIEKEKARMITYQKRKRGLKKKAEEFSTLCGVPTCMIIYGPRLNNRPVDVEIWPKDEKDFMQVVNLYKDKAY 81 (261)
Q Consensus 2 gR~KI~ik~I~n~~~R~vTFsKRr~GL~KKA~ELSvLCdaeValIvfSp~gk~~~f~p~~wPs~~~~v~~vieRY~~~~~ 81 (261)
||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+||+|+|+ +++|+.||+||...+.
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~-------s~~~~~il~rY~~~~~ 73 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYA-------STDMDKVLLKYTEYNE 73 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEE-------SSCHHHHHHHHHHCCS
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeC-------CCCHHHHHHHHHhcCc
Confidence 899999999999999999999999999999999999999999999999999998887 5789999999999776
Q ss_pred cc
Q 041581 82 SS 83 (261)
Q Consensus 82 ~~ 83 (261)
..
T Consensus 74 ~~ 75 (90)
T 3p57_A 74 PH 75 (90)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=99.98 E-value=1.2e-34 Score=218.14 Aligned_cols=72 Identities=26% Similarity=0.402 Sum_probs=68.6
Q ss_pred CCcccceeEEecCcccccchhhhccchhhhhhhhhhcccCCCeeeEEecCCCCCCCccccccCCCChhhHHHHHHhhhc
Q 041581 1 MGRGKLTMQLIEKEKARMITYQKRKRGLKKKAEEFSTLCGVPTCMIIYGPRLNNRPVDVEIWPKDEKDFMQVVNLYKDK 79 (261)
Q Consensus 1 MgR~KI~ik~I~n~~~R~vTFsKRr~GL~KKA~ELSvLCdaeValIvfSp~gk~~~f~p~~wPs~~~~v~~vieRY~~~ 79 (261)
|||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+||+|+|+ ++++..|+++|...
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~-------sps~~~il~r~~G~ 87 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFS-------TPKFEPIVTQQEGR 87 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEE-------CTTTTHHHHSHHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceec-------CCCHHHHHHHhhCC
Confidence 8999999999999999999999999999999999999999999999999999999998 56889999998754
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=99.97 E-value=2.2e-34 Score=214.13 Aligned_cols=71 Identities=27% Similarity=0.401 Sum_probs=67.0
Q ss_pred CCcccceeEEecCcccccchhhhccchhhhhhhhhhcccCCCeeeEEecCCCCCCCccccccCCCChhhHHHHHHhhh
Q 041581 1 MGRGKLTMQLIEKEKARMITYQKRKRGLKKKAEEFSTLCGVPTCMIIYGPRLNNRPVDVEIWPKDEKDFMQVVNLYKD 78 (261)
Q Consensus 1 MgR~KI~ik~I~n~~~R~vTFsKRr~GL~KKA~ELSvLCdaeValIvfSp~gk~~~f~p~~wPs~~~~v~~vieRY~~ 78 (261)
|||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+|++|+|+ +++++.+|++|..
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~-------s~~~~~~i~~~~G 80 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA-------TRKLQPMITSETG 80 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEE-------CGGGGGGTSSHHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEec-------CCCHHHHHhhhcc
Confidence 8999999999999999999999999999999999999999999999999999999988 6788888886643
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=99.97 E-value=7.8e-34 Score=215.13 Aligned_cols=70 Identities=27% Similarity=0.406 Sum_probs=66.4
Q ss_pred CCcccceeEEecCcccccchhhhccchhhhhhhhhhcccCCCeeeEEecCCCCCCCccccccCCCChhhHHHHHHhh
Q 041581 1 MGRGKLTMQLIEKEKARMITYQKRKRGLKKKAEEFSTLCGVPTCMIIYGPRLNNRPVDVEIWPKDEKDFMQVVNLYK 77 (261)
Q Consensus 1 MgR~KI~ik~I~n~~~R~vTFsKRr~GL~KKA~ELSvLCdaeValIvfSp~gk~~~f~p~~wPs~~~~v~~vieRY~ 77 (261)
|||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+||+|+|+ +++++.||+++.
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~-------s~~~~~vi~~~~ 78 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA-------TRKLQPMITSET 78 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEE-------CGGGGGGTSSHH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeec-------CccHHHHHHhhh
Confidence 8999999999999999999999999999999999999999999999999999999998 678888888643
No 6
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=70.13 E-value=10 Score=23.03 Aligned_cols=30 Identities=17% Similarity=0.317 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHHHH---HHHHHHHHHHHHHHhh
Q 041581 129 NRFSIDQLKQMLVV---FDEYIDVATRKLTIMR 158 (261)
Q Consensus 129 ~~Ls~eEL~~Le~~---LE~~L~~ir~Ri~~l~ 158 (261)
++.|.+||-.|+.. ||+++....+|+..++
T Consensus 15 egfspeelaaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678888888764 4555666667766654
No 7
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=66.79 E-value=19 Score=21.91 Aligned_cols=42 Identities=12% Similarity=0.260 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 041581 95 FFADRKRKVDENIAKTRKANYESLFSTDDWDEMINRFSIDQLKQMLVVFDEYIDVATRKLT 155 (261)
Q Consensus 95 ~~~~~~~Klkeel~kLrke~~e~~~~~~~~ge~L~~Ls~eEL~~Le~~LE~~L~~ir~Ri~ 155 (261)
.+..+...++.+...+++++.+. ++|...||+.+...|.||+
T Consensus 7 qlenevaslenenetlkkknlhk-------------------kdliaylekeianlrkkie 48 (49)
T 3he5_A 7 QLENEVASLENENETLKKKNLHK-------------------KDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcccHHHHHhcccH-------------------HHHHHHHHHHHHHHHHHhc
Confidence 35566777888888888777542 3566778888877777764
No 8
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=56.01 E-value=4.8 Score=28.27 Aligned_cols=58 Identities=16% Similarity=0.246 Sum_probs=39.9
Q ss_pred hhhhhhhhcccCCCeeeEEecCCCCCCCccccccCCCChhhHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHH
Q 041581 29 KKKAEEFSTLCGVPTCMIIYGPRLNNRPVDVEIWPKDEKDFMQVVNLYKDKAYSSVRGVKSLSLFDFFADRKRKVDENIA 108 (261)
Q Consensus 29 ~KKA~ELSvLCdaeValIvfSp~gk~~~f~p~~wPs~~~~v~~vieRY~~~~~~~~~~~k~~~~~~~~~~~~~Klkeel~ 108 (261)
.|+|.|.+.|++=|.|++.|. ++..-|+||...-.+. ....-|.+-.+.+.+|.+
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~------------------g~~~qI~k~l~~~~d~-------~~r~kW~~~~~ei~~E~~ 70 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQ------------------GVLDQMNKYLYSVKDT-------HLRQKWQQVWQEINVEAK 70 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHH------------------HHHHHHHHHHHTCSCH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHH------------------HHHHHHHHHHHhcCCH-------HHHHhHHHHHHHHHHHHH
Confidence 589999999999999998664 3566788887754321 112346666667777776
Q ss_pred HHH
Q 041581 109 KTR 111 (261)
Q Consensus 109 kLr 111 (261)
.++
T Consensus 71 ~Vk 73 (78)
T 2rpa_A 71 QVK 73 (78)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 9
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=54.97 E-value=26 Score=21.43 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 041581 130 RFSIDQLKQMLVVFDEYIDVATRKLTIMRGQQ 161 (261)
Q Consensus 130 ~Ls~eEL~~Le~~LE~~L~~ir~Ri~~l~~~~ 161 (261)
+++-+||.+=.+.++.-+..++++|..++...
T Consensus 1 ~~tk~~l~qkI~kVdrEI~Kte~kI~~lqkKl 32 (42)
T 2l5g_B 1 GLSKEELIQNMDRVDREITMVEQQISKLKKKQ 32 (42)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777777777777665443
No 10
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=46.19 E-value=4.2 Score=30.21 Aligned_cols=40 Identities=10% Similarity=0.166 Sum_probs=32.2
Q ss_pred ecCcccccchhhhccchhhhhhhhhhcccCCCeeeEEecCCCCCC
Q 041581 11 IEKEKARMITYQKRKRGLKKKAEEFSTLCGVPTCMIIYGPRLNNR 55 (261)
Q Consensus 11 I~n~~~R~vTFsKRr~GL~KKA~ELSvLCdaeValIvfSp~gk~~ 55 (261)
|.++.....||-=.-..|-+|.-+|+.+| ++.|+|.||-|
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef 60 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSF 60 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEE
Confidence 45556667778888889999999999776 99999998743
No 11
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=43.40 E-value=1.3e+02 Score=27.21 Aligned_cols=37 Identities=8% Similarity=0.138 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhchh
Q 041581 136 LKQMLVVFDEYIDVATRKLTIMRGQQQSCIAAADHHR 172 (261)
Q Consensus 136 L~~Le~~LE~~L~~ir~Ri~~l~~~~~s~~~k~~~~~ 172 (261)
...|...||+++..-..|++++.+++-....++....
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 427 VMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777766788888888877776665533
No 12
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=34.68 E-value=55 Score=17.46 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 041581 96 FADRKRKVDENIAKTRKANY 115 (261)
Q Consensus 96 ~~~~~~Klkeel~kLrke~~ 115 (261)
+-.+++.+++.+.+++++.+
T Consensus 6 lykeledlqerlrklrkklr 25 (27)
T 3twe_A 6 LYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33455667777777777654
No 13
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=34.66 E-value=1.8 Score=30.48 Aligned_cols=29 Identities=17% Similarity=0.375 Sum_probs=18.7
Q ss_pred eeeEEecCCCCCCCccccccCCCChhhHHHHHHhhhcc
Q 041581 43 TCMIIYGPRLNNRPVDVEIWPKDEKDFMQVVNLYKDKA 80 (261)
Q Consensus 43 ValIvfSp~gk~~~f~p~~wPs~~~~v~~vieRY~~~~ 80 (261)
||||||+|. |+.+.+ .++-..+..|++..
T Consensus 16 VaLlvfGpk-kLP~l~--------r~lGk~ir~fK~~~ 44 (78)
T 2l16_A 16 IALIIFGPS-KLPEIG--------RAAGRTLLEFKSAT 44 (78)
T ss_dssp HHHHHSCTT-THHHHH--------HHHHHHHHHHHHHH
T ss_pred HHhheeCcc-HhHHHH--------HHHHHHHHHHHHHH
Confidence 788999985 543333 45666677777654
No 14
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=30.81 E-value=61 Score=17.82 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 041581 134 DQLKQMLVVFDEYIDVATRKLTIM 157 (261)
Q Consensus 134 eEL~~Le~~LE~~L~~ir~Ri~~l 157 (261)
++|..|...||..-+....|.+.+
T Consensus 2 dqlnallasleaenkqlkakveel 25 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEEL 25 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777666666666655
No 15
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=25.51 E-value=37 Score=20.53 Aligned_cols=23 Identities=13% Similarity=0.411 Sum_probs=19.7
Q ss_pred CCcCCCCCHHHHHHHHHHHHHHH
Q 041581 125 DEMINRFSIDQLKQMLVVFDEYI 147 (261)
Q Consensus 125 ge~L~~Ls~eEL~~Le~~LE~~L 147 (261)
-+.|.+|++-|+.+|.+.||+..
T Consensus 7 ie~i~~lTvlE~~eLvk~leekf 29 (40)
T 1dd4_C 7 IEAIEKLTVSELAELVKKLEDKF 29 (40)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCcHHHHHHHHHHHHHHH
Confidence 35678999999999999999864
No 16
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=23.42 E-value=1.8e+02 Score=19.93 Aligned_cols=38 Identities=11% Similarity=0.176 Sum_probs=27.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 041581 128 INRFSIDQLKQMLVVFDEYIDVATRKLTIMRGQQQSCI 165 (261)
Q Consensus 128 L~~Ls~eEL~~Le~~LE~~L~~ir~Ri~~l~~~~~s~~ 165 (261)
..++|-+||.++.-.++..+..-..+++.|..=+....
T Consensus 11 y~~ltreELi~l~lk~~~~l~~k~~~v~eLEdYID~LL 48 (75)
T 3tso_C 11 YRSLTYEEVLQELVKHKELLRRKDTHIRELEDYIDNLL 48 (75)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888777777777765555443
No 17
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=23.27 E-value=1.8e+02 Score=26.58 Aligned_cols=12 Identities=17% Similarity=0.274 Sum_probs=9.7
Q ss_pred hhHHHHHHhhhc
Q 041581 68 DFMQVVNLYKDK 79 (261)
Q Consensus 68 ~v~~vieRY~~~ 79 (261)
.+.+++.+|...
T Consensus 24 ~i~d~L~k~e~~ 35 (409)
T 1m1j_C 24 GIADFFNKYRLT 35 (409)
T ss_dssp HHHHHHHHHHHH
T ss_pred cHHHHHHHHHhc
Confidence 688899999874
No 18
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T
Probab=22.83 E-value=47 Score=26.33 Aligned_cols=83 Identities=10% Similarity=-0.098 Sum_probs=30.6
Q ss_pred hhhcccCCCe----eeEEecCCCCCCCccccccCCCChhhHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHH
Q 041581 34 EFSTLCGVPT----CMIIYGPRLNNRPVDVEIWPKDEKDFMQVVNLYKDKAYSSVRGVKSLSLFDFFADRKRKVDENIAK 109 (261)
Q Consensus 34 ELSvLCdaeV----alIvfSp~gk~~~f~p~~wPs~~~~v~~vieRY~~~~~~~~~~~k~~~~~~~~~~~~~Klkeel~k 109 (261)
|+|..||-+| ++...-.+|++|-|+ +..-..... .+.. + + +.-|...|-....+.+.++..+
T Consensus 6 ~~CsFcg~~IyPG~G~~fVr~Dgkvf~Fc-------ssKC~k~f~-~krn-P-R----kl~WT~~yRr~~kK~~~~e~~k 71 (158)
T 4a17_T 6 GTCSFCEYRIYPGRGQRFIAKDGRGFFFL-------TKKAKCLSL-RKVK-A-Q----KITWTIARRRLWKKVKATDIAQ 71 (158)
T ss_dssp EECTTTCCEECTTCCEEEECTTSCEEEES-------CHHHHHHHH-HTCC-G-G----GSTTSHHHHHHHC---------
T ss_pred EEecCcCCcccCCCCeEEEeeCCceEEEE-------cHHHHHHHH-cccC-c-c----cchhHHHHHHHhCCcchHHHHH
Confidence 6788888877 466667789999998 433333332 1111 1 1 2345555555444445555543
Q ss_pred HHHHHhhccccccccCCcCCCC
Q 041581 110 TRKANYESLFSTDDWDEMINRF 131 (261)
Q Consensus 110 Lrke~~e~~~~~~~~ge~L~~L 131 (261)
-+ .++-..+++.+||-+|+.+
T Consensus 72 kr-~~r~vK~~R~ivg~sl~~I 92 (158)
T 4a17_T 72 KK-KKRNVTVARAIVGISLEEI 92 (158)
T ss_dssp ----------------------
T ss_pred HH-hcCCcccchhhhhhhHHHH
Confidence 22 2222233334555555443
No 19
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=22.68 E-value=2.6e+02 Score=21.34 Aligned_cols=26 Identities=8% Similarity=0.166 Sum_probs=22.3
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHHHHH
Q 041581 126 EMINRFSIDQLKQMLVVFDEYIDVAT 151 (261)
Q Consensus 126 e~L~~Ls~eEL~~Le~~LE~~L~~ir 151 (261)
-+|++||.++|+++...|-..+..+.
T Consensus 53 L~id~ls~~~L~e~~keLh~~I~~LE 78 (133)
T 1j1d_C 53 LELAGLGFAELQDLARQLHARVDKVD 78 (133)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 36999999999999999888877764
No 20
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=22.17 E-value=2.1e+02 Score=20.10 Aligned_cols=13 Identities=23% Similarity=0.437 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHH
Q 041581 102 KVDENIAKTRKAN 114 (261)
Q Consensus 102 Klkeel~kLrke~ 114 (261)
+-+++|.+|++.+
T Consensus 37 kekEqL~~LKkkl 49 (84)
T 1gmj_A 37 RAKEQLAALKKHK 49 (84)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455666666554
No 21
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=22.10 E-value=2.2e+02 Score=20.87 Aligned_cols=29 Identities=21% Similarity=0.184 Sum_probs=23.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHH-HHHH
Q 041581 127 MINRFSIDQLKQMLVVFDEYIDVAT-RKLT 155 (261)
Q Consensus 127 ~L~~Ls~eEL~~Le~~LE~~L~~ir-~Ri~ 155 (261)
+|++||.++|+++...|-..+..+. .|..
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYD 67 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFD 67 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 6799999999999999988887765 3443
Done!