BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041582
(153 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DH3|A Chain A, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
Basis For Creb Faimly Selective Dimerization And Dna
Binding
pdb|1DH3|C Chain C, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
Basis For Creb Faimly Selective Dimerization And Dna
Binding
Length = 55
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 50 KRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISL 97
KR R++ NRE+AR SR +KK+ ++ L+ +V ++ N L E+L +L
Sbjct: 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKAL 48
>pdb|1B47|A Chain A, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
pdb|1B47|B Chain B, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
pdb|1B47|C Chain C, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
Length = 304
Score = 30.0 bits (66), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 91 SEKLISLL-ESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGL 132
+++ ISL E ++ +ENSQ + ++ L L+ S +LA L+G+
Sbjct: 80 TKQTISLFKEGKERMYEENSQPRRNLTKLSLIFSHMLAELKGI 122
>pdb|2CBL|A Chain A, N-Terminal Domain Of Cbl In Complex With Its Binding Site
On Zap-70
Length = 305
Score = 30.0 bits (66), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 91 SEKLISLL-ESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGL 132
+++ ISL E ++ +ENSQ + ++ L L+ S +LA L+G+
Sbjct: 80 TKQTISLFKEGKERMYEENSQPRRNLTKLSLIFSHMLAELKGI 122
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 30.0 bits (66), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 91 SEKLISLL-ESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGL 132
+++ ISL E ++ +ENSQ + ++ L L+ S +LA L+G+
Sbjct: 82 TKQTISLFKEGKERMYEENSQPRRNLTKLSLIFSHMLAELKGI 124
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 30.0 bits (66), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 91 SEKLISLL-ESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGL 132
+++ ISL E ++ +ENSQ + ++ L L+ S +LA L+G+
Sbjct: 80 TKQTISLFKEGKERMYEENSQPRRNLTKLSLIFSHMLAELKGI 122
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 30.0 bits (66), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 91 SEKLISLL-ESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGL 132
+++ ISL E ++ +ENSQ + ++ L L+ S +LA L+G+
Sbjct: 80 TKQTISLFKEGKERMYEENSQPRRNLTKLSLIFSHMLAELKGI 122
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 30.0 bits (66), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 91 SEKLISLL-ESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGL 132
+++ ISL E ++ +ENSQ + ++ L L+ S +LA L+G+
Sbjct: 82 TKQTISLFKEGKERMYEENSQPRRNLTKLSLIFSHMLAELKGI 124
>pdb|1YVH|A Chain A, Crystal Structure Of The C-Cbl Tkb Domain In Complex With
The Aps Ptyr-618 Phosphopeptide
pdb|3BUM|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Sprouty2
pdb|3BUN|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Sprouty4
pdb|3BUO|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Egf Receptor'
pdb|3BUO|D Chain D, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Egf Receptor'
pdb|3BUW|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Syk
pdb|3BUW|D Chain D, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Syk
pdb|3BUX|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In C-Met
pdb|3BUX|D Chain D, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In C-Met
pdb|3OB1|B Chain B, Crystal Structure Of C-Cbl Tkb Domain In Complex With
Double Phosphorylated Spry2 Peptide
pdb|3OB2|B Chain B, Crystal Structure Of C-Cbl Tkb Domain In Complex With
Double Phosphorylated Egfr Peptide
pdb|3PLF|B Chain B, Reverse Binding Mode Of Metrd Peptide Complexed With C-Cbl
Tkb Domain
pdb|3PLF|D Chain D, Reverse Binding Mode Of Metrd Peptide Complexed With C-Cbl
Tkb Domain
Length = 329
Score = 29.6 bits (65), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 91 SEKLISLL-ESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGL 132
+++ ISL E ++ +ENSQ + ++ L L+ S +LA L+G+
Sbjct: 104 TKQTISLFKEGKERMYEENSQPRRNLTKLSLIFSHMLAELKGI 146
>pdb|4IQD|A Chain A, Crystal Structure Of Carboxyvinyl-carboxyphosphonate
Phosphorylmutase From Bacillus Anthracis
pdb|4IQD|B Chain B, Crystal Structure Of Carboxyvinyl-carboxyphosphonate
Phosphorylmutase From Bacillus Anthracis
pdb|4IQE|A Chain A, Crystal Structure Of Carboxyvinyl-carboxyphosphonate
Phosphorylmutase From Bacillus Anthracis Str. Ames
Ancestor
pdb|4IQE|B Chain B, Crystal Structure Of Carboxyvinyl-carboxyphosphonate
Phosphorylmutase From Bacillus Anthracis Str. Ames
Ancestor
Length = 305
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 73 IEELQAQVNHVQTVNHQLSEKLISL----LESNHQIVQENSQLKEKVSSLQLVISDLLAP 128
+E ++A+V VQ + QL +K L L + ++VQ+ +KE SL +V
Sbjct: 111 VEXVEAKVAAVQIEDQQLPKKCGHLNGKKLVTTEELVQKIKAIKEVAPSLYIVARTDARG 170
Query: 129 LRGLEE 134
+ GL+E
Sbjct: 171 VEGLDE 176
>pdb|2L50|A Chain A, Solution Structure Of Apo S100a16
pdb|2L50|B Chain B, Solution Structure Of Apo S100a16
pdb|2L51|A Chain A, Solution Structure Of Calcium Bound S100a16
pdb|2L51|B Chain B, Solution Structure Of Calcium Bound S100a16
Length = 102
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 59 RESARRSRMRKKKLIEELQAQVNHV--QTVNHQLSEKLISLLESNH 102
+ S ++++ K E LQ ++NH+ T N + ++KLI L++NH
Sbjct: 24 KYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANH 69
>pdb|3FFZ|A Chain A, Domain Organization In Clostridium Butulinum Neurotoxin
Type E Is Unique: Its Implication In Faster
Translocation
pdb|3FFZ|B Chain B, Domain Organization In Clostridium Butulinum Neurotoxin
Type E Is Unique: Its Implication In Faster
Translocation
Length = 1252
Score = 26.9 bits (58), Expect = 5.1, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 8/55 (14%)
Query: 68 RKKKLIEELQAQVNHVQTV------NHQLSEKLISLLESNHQIVQENSQLKEKVS 116
RK+++ + LQ QVN ++T+ ++ L EK + L + + I Q ++L +KVS
Sbjct: 700 RKEQMYQALQNQVNAIKTIIESKYNSYTLEEK--NELTNKYDIKQIENELNQKVS 752
>pdb|3NXA|A Chain A, X-Ray Structure Of The Apo Form Of Human S100a16
pdb|3NXA|B Chain B, X-Ray Structure Of The Apo Form Of Human S100a16
pdb|3NXA|C Chain C, X-Ray Structure Of The Apo Form Of Human S100a16
pdb|3NXA|D Chain D, X-Ray Structure Of The Apo Form Of Human S100a16
Length = 100
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 59 RESARRSRMRKKKLIEELQAQVNHV--QTVNHQLSEKLISLLESNH 102
+ S ++++ K E LQ ++NH+ T N + ++KLI L++NH
Sbjct: 23 KYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANH 68
>pdb|2IW5|B Chain B, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|B Chain B, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|B Chain B, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 235
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSS 117
+E + A TV QL +L+S+ I Q NS LKEK+
Sbjct: 74 VEAVSANATAATTVLRQLDMELVSVKRQIQNIKQTNSALKEKLDG 118
>pdb|2JQQ|A Chain A, Solution Structure Of Saccharomyces Cerevisiae Conserved
Oligomeric Golgi Subunit 2 Protein (Cog2p)
Length = 204
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 24/36 (66%)
Query: 104 IVQENSQLKEKVSSLQLVISDLLAPLRGLEEVNGNM 139
+ Q + +K+ +S+ Q +I D+L L+ L+E+ G++
Sbjct: 60 MTQLDHLIKDDISNTQEIIKDVLEYLKKLDEIYGSL 95
>pdb|2XAF|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 482
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSS 117
+E + A TV QL +L+S+ I Q NS LKEK+
Sbjct: 321 VEAVSANATAATTVLRQLDMELVSVKRQIQNIKQTNSALKEKLDG 365
>pdb|2V1D|B Chain B, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 178
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSS 117
+E + A TV QL +L+S+ I Q NS LKEK+
Sbjct: 17 VEAVSANATAATTVLRQLDMELVSVKRQIQNIKQTNSALKEKLDG 61
>pdb|2X0L|B Chain B, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 133
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSS 117
+E + A TV QL +L+S+ I Q NS LKEK+
Sbjct: 14 VEAVSANATAATTVLRQLDMELVSVKRQIQNIKQTNSALKEKLDG 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.125 0.330
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,664,480
Number of Sequences: 62578
Number of extensions: 119044
Number of successful extensions: 422
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 397
Number of HSP's gapped (non-prelim): 76
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)