Query 041582
Match_columns 153
No_of_seqs 130 out of 790
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 08:38:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041582.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041582hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 99.5 2.8E-13 6E-18 91.6 9.6 62 47-108 2-63 (65)
2 KOG4005 Transcription factor X 99.5 1E-12 2.3E-17 110.6 13.6 81 46-126 65-145 (292)
3 KOG4343 bZIP transcription fac 99.4 1E-12 2.2E-17 120.2 11.9 93 46-138 277-385 (655)
4 PF00170 bZIP_1: bZIP transcri 99.4 1.4E-12 2.9E-17 88.1 9.4 63 47-109 2-64 (64)
5 PF07716 bZIP_2: Basic region 99.2 1.4E-10 3.1E-15 76.2 8.7 52 47-99 2-53 (54)
6 KOG3584 cAMP response element 99.2 4.1E-11 8.8E-16 103.3 7.1 58 44-101 285-342 (348)
7 KOG0709 CREB/ATF family transc 99.1 1.4E-10 3E-15 104.6 6.7 70 46-122 247-316 (472)
8 PF03131 bZIP_Maf: bZIP Maf tr 98.1 2.8E-08 6E-13 71.7 -6.9 55 46-100 26-80 (92)
9 KOG4571 Activating transcripti 98.0 0.00011 2.4E-09 63.5 11.8 59 41-99 218-276 (294)
10 KOG0837 Transcriptional activa 98.0 3E-05 6.4E-10 66.4 8.0 64 49-126 204-268 (279)
11 KOG4196 bZIP transcription fac 97.3 0.0038 8.2E-08 48.7 9.9 68 47-121 50-117 (135)
12 KOG3119 Basic region leucine z 97.2 0.006 1.3E-07 51.9 11.3 52 46-97 190-241 (269)
13 TIGR02449 conserved hypothetic 97.1 0.0058 1.3E-07 42.3 8.5 63 73-135 2-64 (65)
14 PF06005 DUF904: Protein of un 96.7 0.013 2.9E-07 41.0 7.9 57 72-128 5-68 (72)
15 COG3074 Uncharacterized protei 96.6 0.021 4.6E-07 40.5 8.1 57 73-129 20-76 (79)
16 PF06005 DUF904: Protein of un 96.6 0.025 5.4E-07 39.7 8.5 53 71-123 18-70 (72)
17 KOG3863 bZIP transcription fac 96.6 0.006 1.3E-07 57.4 6.6 67 53-126 493-560 (604)
18 PRK15422 septal ring assembly 96.5 0.025 5.3E-07 40.7 7.9 57 73-129 20-76 (79)
19 PRK13169 DNA replication intia 96.5 0.021 4.6E-07 43.1 7.9 47 72-118 9-55 (110)
20 PF06156 DUF972: Protein of un 96.4 0.023 4.9E-07 42.6 7.9 47 72-118 9-55 (107)
21 PF06156 DUF972: Protein of un 96.0 0.069 1.5E-06 40.0 8.5 53 75-127 5-57 (107)
22 PRK13169 DNA replication intia 95.2 0.19 4.1E-06 38.0 8.5 53 74-126 4-56 (110)
23 PF02183 HALZ: Homeobox associ 95.1 0.13 2.8E-06 33.0 6.2 41 82-122 2-42 (45)
24 COG4467 Regulator of replicati 94.7 0.16 3.5E-06 38.6 6.8 46 79-124 9-54 (114)
25 TIGR02449 conserved hypothetic 94.6 0.5 1.1E-05 32.7 8.6 55 71-125 7-61 (65)
26 PF13747 DUF4164: Domain of un 94.2 1.5 3.2E-05 31.7 11.7 78 49-126 10-87 (89)
27 KOG1414 Transcriptional activa 94.2 0.0036 7.8E-08 55.7 -3.5 56 42-97 146-205 (395)
28 COG4467 Regulator of replicati 94.1 0.34 7.3E-06 36.9 7.3 47 71-117 8-54 (114)
29 PF08614 ATG16: Autophagy prot 94.0 2.6 5.6E-05 33.8 13.1 67 53-119 119-185 (194)
30 PRK10884 SH3 domain-containing 93.8 0.71 1.5E-05 38.1 9.5 46 70-115 124-169 (206)
31 KOG1318 Helix loop helix trans 93.7 1.9 4.2E-05 39.3 12.8 118 7-126 188-324 (411)
32 PRK13729 conjugal transfer pil 93.7 0.28 6E-06 45.4 7.5 51 71-121 76-126 (475)
33 PF09304 Cortex-I_coil: Cortex 93.6 1.2 2.7E-05 33.6 9.6 62 65-126 10-71 (107)
34 PF07989 Microtub_assoc: Micro 93.4 0.86 1.9E-05 32.1 8.1 53 73-125 2-62 (75)
35 COG4026 Uncharacterized protei 93.4 0.4 8.8E-06 41.0 7.4 54 73-126 144-197 (290)
36 PF14197 Cep57_CLD_2: Centroso 93.3 1.4 3E-05 30.5 8.9 54 70-123 11-64 (69)
37 PF04102 SlyX: SlyX; InterPro 93.1 0.73 1.6E-05 31.6 7.2 49 71-119 4-52 (69)
38 PRK10884 SH3 domain-containing 92.8 3.6 7.8E-05 33.9 12.2 50 70-119 117-166 (206)
39 KOG4005 Transcription factor X 92.6 1.1 2.3E-05 38.7 9.0 76 44-119 67-145 (292)
40 PF14662 CCDC155: Coiled-coil 92.5 0.99 2.2E-05 37.3 8.4 54 72-125 9-62 (193)
41 TIGR02894 DNA_bind_RsfA transc 92.5 1.2 2.6E-05 35.9 8.6 41 79-119 98-138 (161)
42 PF10224 DUF2205: Predicted co 92.3 1.5 3.2E-05 31.5 8.1 48 73-120 18-65 (80)
43 PRK02119 hypothetical protein; 92.2 1.4 2.9E-05 30.8 7.7 48 71-125 9-56 (73)
44 PF10473 CENP-F_leu_zip: Leuci 92.0 3.1 6.8E-05 32.6 10.3 76 54-129 35-110 (140)
45 PRK15422 septal ring assembly 91.8 1.3 2.8E-05 31.9 7.3 44 71-114 4-47 (79)
46 PRK11637 AmiB activator; Provi 91.8 4.8 0.0001 35.8 12.6 58 69-126 73-130 (428)
47 PF15294 Leu_zip: Leucine zipp 91.8 1 2.2E-05 39.1 8.0 51 76-126 130-180 (278)
48 PRK00295 hypothetical protein; 91.7 2.1 4.5E-05 29.4 8.0 47 71-117 5-51 (68)
49 PRK02793 phi X174 lysis protei 91.6 1.8 3.8E-05 30.1 7.7 47 71-117 8-54 (72)
50 PF11559 ADIP: Afadin- and alp 91.6 3.5 7.5E-05 31.5 10.1 66 52-117 47-112 (151)
51 PF12808 Mto2_bdg: Micro-tubul 91.4 0.72 1.6E-05 30.7 5.3 50 68-120 1-50 (52)
52 TIGR00219 mreC rod shape-deter 91.3 0.58 1.3E-05 40.0 6.0 38 79-116 67-108 (283)
53 PRK11637 AmiB activator; Provi 91.2 6.2 0.00013 35.1 12.7 73 54-126 51-123 (428)
54 PRK00736 hypothetical protein; 91.0 2.3 5.1E-05 29.2 7.8 46 71-116 5-50 (68)
55 PRK04325 hypothetical protein; 91.0 2.4 5.2E-05 29.6 7.9 47 72-125 10-56 (74)
56 PRK04406 hypothetical protein; 90.9 2.4 5.2E-05 29.8 7.9 48 72-126 12-59 (75)
57 PF12718 Tropomyosin_1: Tropom 90.7 2.8 6.1E-05 32.5 8.9 55 70-124 13-67 (143)
58 PF12711 Kinesin-relat_1: Kine 90.3 2.7 6E-05 30.5 7.9 42 81-122 20-67 (86)
59 PRK02119 hypothetical protein; 90.3 4.1 8.9E-05 28.4 8.6 54 73-133 4-57 (73)
60 TIGR03752 conj_TIGR03752 integ 90.2 2.3 5.1E-05 39.4 9.2 20 74-93 76-95 (472)
61 PF04880 NUDE_C: NUDE protein, 90.1 0.6 1.3E-05 37.6 4.8 43 73-119 2-44 (166)
62 PRK04406 hypothetical protein; 89.6 5.2 0.00011 28.1 8.6 55 73-134 6-60 (75)
63 PF07888 CALCOCO1: Calcium bin 89.3 5.2 0.00011 37.8 10.9 69 54-122 154-222 (546)
64 PRK00846 hypothetical protein; 88.8 4.3 9.4E-05 28.9 7.8 49 71-126 13-61 (77)
65 KOG3119 Basic region leucine z 88.7 6 0.00013 33.7 10.1 52 73-124 203-254 (269)
66 PF09755 DUF2046: Uncharacteri 88.5 4.6 0.0001 35.6 9.4 46 74-119 23-68 (310)
67 PF06785 UPF0242: Uncharacteri 88.4 3.1 6.7E-05 37.5 8.4 52 66-117 122-173 (401)
68 smart00338 BRLZ basic region l 88.4 2.9 6.2E-05 27.7 6.4 27 95-121 29-55 (65)
69 PF11932 DUF3450: Protein of u 88.3 13 0.00028 30.7 11.7 62 65-126 50-111 (251)
70 PF09726 Macoilin: Transmembra 88.3 9.9 0.00021 36.7 12.3 40 74-113 541-580 (697)
71 KOG4797 Transcriptional regula 88.2 2.1 4.5E-05 32.8 6.2 42 83-124 65-111 (123)
72 PRK13922 rod shape-determining 88.2 3.1 6.7E-05 34.7 7.9 38 79-116 70-110 (276)
73 PRK04325 hypothetical protein; 88.2 6 0.00013 27.6 8.2 54 73-133 4-57 (74)
74 PF01166 TSC22: TSC-22/dip/bun 88.2 0.76 1.6E-05 31.4 3.4 30 85-114 14-43 (59)
75 KOG2264 Exostosin EXT1L [Signa 87.7 4.9 0.00011 38.8 9.6 76 71-146 93-177 (907)
76 PF05266 DUF724: Protein of un 87.6 14 0.0003 30.1 12.0 79 48-126 87-179 (190)
77 PF11932 DUF3450: Protein of u 87.6 15 0.00032 30.4 12.4 55 73-127 51-105 (251)
78 PF04102 SlyX: SlyX; InterPro 87.5 5.6 0.00012 27.1 7.6 53 75-127 1-53 (69)
79 COG1579 Zn-ribbon protein, pos 87.4 17 0.00037 30.9 12.4 75 50-124 31-114 (239)
80 PF11559 ADIP: Afadin- and alp 87.2 11 0.00024 28.7 12.3 52 67-118 48-99 (151)
81 COG3074 Uncharacterized protei 87.2 6.7 0.00014 28.0 7.9 47 72-118 5-51 (79)
82 PF07106 TBPIP: Tat binding pr 86.8 5.8 0.00012 30.9 8.3 47 73-119 88-136 (169)
83 KOG0977 Nuclear envelope prote 86.7 7.1 0.00015 36.9 10.1 62 64-125 134-195 (546)
84 PF05103 DivIVA: DivIVA protei 86.5 0.41 8.9E-06 35.2 1.6 52 71-122 25-76 (131)
85 PF00170 bZIP_1: bZIP transcri 86.5 5.4 0.00012 26.4 6.9 22 97-118 31-52 (64)
86 PRK00846 hypothetical protein; 86.4 9.6 0.00021 27.1 8.4 53 74-133 9-61 (77)
87 PRK02793 phi X174 lysis protei 86.3 9 0.00019 26.6 8.4 53 74-126 4-56 (72)
88 KOG1962 B-cell receptor-associ 86.1 3.5 7.7E-05 34.6 7.1 25 90-114 184-208 (216)
89 PRK09039 hypothetical protein; 86.1 20 0.00044 31.4 12.1 51 76-126 135-185 (343)
90 PF07106 TBPIP: Tat binding pr 85.9 4.3 9.2E-05 31.6 7.1 54 73-126 81-136 (169)
91 PF14662 CCDC155: Coiled-coil 85.9 6.3 0.00014 32.7 8.3 53 74-126 4-56 (193)
92 PRK00295 hypothetical protein; 85.7 9.3 0.0002 26.2 9.3 51 76-126 3-53 (68)
93 PF04849 HAP1_N: HAP1 N-termin 85.7 6.5 0.00014 34.6 8.8 35 83-117 232-266 (306)
94 PF07888 CALCOCO1: Calcium bin 85.5 6.5 0.00014 37.1 9.2 68 72-139 165-232 (546)
95 COG4026 Uncharacterized protei 85.4 5.3 0.00011 34.4 7.8 52 71-122 135-186 (290)
96 smart00340 HALZ homeobox assoc 85.2 2.1 4.6E-05 27.6 4.1 28 94-121 7-34 (44)
97 TIGR03752 conj_TIGR03752 integ 85.1 3.4 7.5E-05 38.3 7.1 56 71-126 66-136 (472)
98 PF10805 DUF2730: Protein of u 85.1 10 0.00022 27.9 8.4 9 70-78 34-42 (106)
99 PF08172 CASP_C: CASP C termin 85.0 6.3 0.00014 33.4 8.2 43 71-120 93-135 (248)
100 PRK09039 hypothetical protein; 85.0 7.1 0.00015 34.3 8.8 41 71-111 137-177 (343)
101 TIGR02894 DNA_bind_RsfA transc 84.8 9.8 0.00021 30.7 8.8 53 73-125 99-151 (161)
102 PRK00888 ftsB cell division pr 84.7 3.2 6.8E-05 30.7 5.6 27 71-97 34-60 (105)
103 PF09738 DUF2051: Double stran 84.7 27 0.00058 30.6 14.7 82 46-127 88-175 (302)
104 PF08317 Spc7: Spc7 kinetochor 84.5 9.6 0.00021 32.9 9.3 46 73-118 211-256 (325)
105 PF12325 TMF_TATA_bd: TATA ele 84.3 16 0.00035 27.8 9.5 18 105-122 95-112 (120)
106 PF08826 DMPK_coil: DMPK coile 84.2 11 0.00023 25.7 7.9 45 76-120 16-60 (61)
107 PF05667 DUF812: Protein of un 84.0 5.4 0.00012 37.8 8.1 70 70-139 327-396 (594)
108 PF12329 TMF_DNA_bd: TATA elem 84.0 12 0.00026 26.0 8.6 58 69-126 10-67 (74)
109 KOG1414 Transcriptional activa 83.9 0.45 9.8E-06 42.4 0.8 49 43-91 278-326 (395)
110 PF14197 Cep57_CLD_2: Centroso 83.8 9.9 0.00021 26.3 7.4 42 77-118 25-66 (69)
111 COG4942 Membrane-bound metallo 83.8 22 0.00048 32.7 11.6 70 50-119 38-107 (420)
112 PF15058 Speriolin_N: Sperioli 83.5 3.4 7.4E-05 34.3 5.7 38 73-118 7-44 (200)
113 KOG0612 Rho-associated, coiled 82.8 34 0.00073 35.5 13.3 17 7-23 380-401 (1317)
114 PF12325 TMF_TATA_bd: TATA ele 82.5 15 0.00033 27.9 8.6 13 108-120 70-82 (120)
115 KOG0977 Nuclear envelope prote 82.5 13 0.00029 35.1 9.9 62 64-125 35-132 (546)
116 PRK00888 ftsB cell division pr 82.2 8.2 0.00018 28.5 6.9 29 90-118 32-60 (105)
117 PF15035 Rootletin: Ciliary ro 82.1 13 0.00028 30.1 8.6 54 71-124 67-120 (182)
118 KOG0982 Centrosomal protein Nu 81.9 17 0.00038 33.8 10.2 51 73-123 299-349 (502)
119 PF02183 HALZ: Homeobox associ 81.9 9.4 0.0002 24.4 6.2 28 94-121 7-34 (45)
120 KOG4196 bZIP transcription fac 81.8 8.3 0.00018 30.3 7.0 38 89-126 78-115 (135)
121 PF04111 APG6: Autophagy prote 81.3 12 0.00026 32.5 8.6 22 103-124 110-131 (314)
122 PF00038 Filament: Intermediat 81.1 31 0.00068 28.8 12.1 41 61-101 213-253 (312)
123 PF04977 DivIC: Septum formati 80.5 7 0.00015 26.0 5.6 23 73-95 26-48 (80)
124 PRK00736 hypothetical protein; 80.2 16 0.00035 25.0 8.2 52 75-126 2-53 (68)
125 PF15070 GOLGA2L5: Putative go 80.0 30 0.00066 33.0 11.5 55 67-121 118-175 (617)
126 PF12718 Tropomyosin_1: Tropom 79.9 23 0.00049 27.5 9.0 21 74-94 38-58 (143)
127 PF08172 CASP_C: CASP C termin 79.9 10 0.00022 32.2 7.5 32 70-101 106-137 (248)
128 PHA02562 46 endonuclease subun 79.7 41 0.00089 30.3 11.9 9 24-32 285-293 (562)
129 PRK10803 tol-pal system protei 79.7 10 0.00022 32.1 7.5 49 72-120 55-103 (263)
130 PF12709 Kinetocho_Slk19: Cent 79.6 13 0.00028 27.2 7.0 29 90-118 47-75 (87)
131 KOG0804 Cytoplasmic Zn-finger 79.3 39 0.00085 31.6 11.5 74 53-126 367-448 (493)
132 PF05700 BCAS2: Breast carcino 79.1 18 0.00038 29.7 8.6 20 100-119 183-202 (221)
133 PF09304 Cortex-I_coil: Cortex 79.1 25 0.00055 26.6 11.0 76 51-126 17-92 (107)
134 PF09744 Jnk-SapK_ap_N: JNK_SA 79.0 9.4 0.0002 30.4 6.7 47 75-121 93-139 (158)
135 PF03962 Mnd1: Mnd1 family; I 78.6 29 0.00063 28.0 9.6 8 106-113 117-124 (188)
136 PF07558 Shugoshin_N: Shugoshi 78.6 2.8 6E-05 26.8 2.9 36 81-116 10-45 (46)
137 COG1579 Zn-ribbon protein, pos 77.9 42 0.00092 28.5 11.0 77 50-126 58-144 (239)
138 PF04728 LPP: Lipoprotein leuc 77.8 19 0.00041 24.3 8.3 44 72-115 4-47 (56)
139 PRK13729 conjugal transfer pil 77.7 14 0.00031 34.3 8.4 56 69-124 67-122 (475)
140 PF12777 MT: Microtubule-bindi 77.6 12 0.00027 32.5 7.6 50 78-127 235-284 (344)
141 PF08647 BRE1: BRE1 E3 ubiquit 77.2 24 0.00053 25.4 11.3 65 53-117 6-70 (96)
142 COG2900 SlyX Uncharacterized p 77.0 23 0.00051 25.1 7.7 47 71-117 8-54 (72)
143 PF13094 CENP-Q: CENP-Q, a CEN 76.8 27 0.00059 26.9 8.6 46 71-116 41-86 (160)
144 PF05377 FlaC_arch: Flagella a 76.8 14 0.0003 24.9 6.0 14 73-86 2-15 (55)
145 PF04728 LPP: Lipoprotein leuc 76.5 20 0.00044 24.1 7.9 47 78-124 3-49 (56)
146 TIGR02209 ftsL_broad cell divi 76.5 15 0.00034 25.0 6.5 34 86-119 25-58 (85)
147 PF10473 CENP-F_leu_zip: Leuci 76.4 35 0.00075 26.7 9.3 45 90-134 57-101 (140)
148 PF02403 Seryl_tRNA_N: Seryl-t 76.4 25 0.00055 25.1 8.2 51 76-126 41-94 (108)
149 COG2433 Uncharacterized conser 76.3 13 0.00029 35.7 7.9 15 78-92 429-443 (652)
150 PF03980 Nnf1: Nnf1 ; InterPr 76.1 5.3 0.00012 29.0 4.3 30 69-98 78-107 (109)
151 KOG1853 LIS1-interacting prote 76.1 14 0.00031 32.3 7.4 82 54-135 28-127 (333)
152 PF07716 bZIP_2: Basic region 76.0 10 0.00023 24.3 5.2 30 90-119 23-52 (54)
153 PF04977 DivIC: Septum formati 75.9 8.9 0.00019 25.5 5.1 30 89-118 21-50 (80)
154 KOG2077 JNK/SAPK-associated pr 75.7 12 0.00027 36.1 7.5 53 74-126 325-377 (832)
155 PHA02562 46 endonuclease subun 75.3 63 0.0014 29.1 11.9 33 96-128 217-249 (562)
156 PF07798 DUF1640: Protein of u 75.2 28 0.0006 27.5 8.4 50 75-124 48-98 (177)
157 PF14645 Chibby: Chibby family 75.2 17 0.00038 27.4 6.9 43 73-115 73-115 (116)
158 COG3883 Uncharacterized protei 75.0 28 0.00061 30.1 8.9 10 106-115 87-96 (265)
159 PF09730 BicD: Microtubule-ass 75.0 10 0.00022 36.9 6.9 45 75-119 73-117 (717)
160 PF05812 Herpes_BLRF2: Herpesv 74.7 6.5 0.00014 30.2 4.5 28 69-96 1-28 (118)
161 KOG1962 B-cell receptor-associ 74.3 23 0.0005 29.8 8.0 51 72-122 159-209 (216)
162 PF10482 CtIP_N: Tumour-suppre 74.2 37 0.00079 26.2 8.4 58 66-123 9-66 (120)
163 COG4942 Membrane-bound metallo 74.0 56 0.0012 30.1 11.0 34 75-108 77-110 (420)
164 PRK10803 tol-pal system protei 73.8 18 0.0004 30.4 7.5 41 70-110 60-100 (263)
165 PF11365 DUF3166: Protein of u 73.8 23 0.00051 26.2 7.1 45 74-125 4-48 (96)
166 KOG1103 Predicted coiled-coil 73.5 26 0.00056 32.2 8.7 65 59-123 226-290 (561)
167 PF09789 DUF2353: Uncharacteri 73.4 30 0.00066 30.6 8.9 43 76-118 70-112 (319)
168 KOG0250 DNA repair protein RAD 73.4 59 0.0013 33.3 11.8 55 70-124 371-426 (1074)
169 KOG2391 Vacuolar sorting prote 73.4 39 0.00085 30.5 9.6 58 69-126 223-280 (365)
170 PF10146 zf-C4H2: Zinc finger- 73.4 29 0.00062 29.2 8.5 43 79-121 61-103 (230)
171 PF07412 Geminin: Geminin; In 73.1 19 0.00042 29.9 7.3 36 83-118 123-158 (200)
172 PF10805 DUF2730: Protein of u 72.8 35 0.00075 25.1 9.2 42 70-111 48-91 (106)
173 PF13815 Dzip-like_N: Iguana/D 72.5 21 0.00044 26.5 6.7 34 79-112 81-114 (118)
174 PF08606 Prp19: Prp19/Pso4-lik 72.2 13 0.00028 26.2 5.2 33 94-126 10-42 (70)
175 PF05377 FlaC_arch: Flagella a 72.1 27 0.00058 23.5 6.7 36 80-122 2-37 (55)
176 KOG0971 Microtubule-associated 72.1 53 0.0012 33.5 11.0 22 53-74 283-304 (1243)
177 PF09789 DUF2353: Uncharacteri 72.0 38 0.00083 30.0 9.2 83 60-142 19-127 (319)
178 KOG4001 Axonemal dynein light 71.8 63 0.0014 27.6 10.2 69 60-128 170-257 (259)
179 KOG4343 bZIP transcription fac 71.8 23 0.0005 33.9 8.2 69 40-119 268-336 (655)
180 cd07429 Cby_like Chibby, a nuc 71.8 13 0.00027 28.2 5.4 24 75-98 76-99 (108)
181 PF10224 DUF2205: Predicted co 71.5 34 0.00074 24.4 8.3 48 80-127 18-65 (80)
182 KOG0250 DNA repair protein RAD 71.3 40 0.00088 34.4 10.1 69 55-123 363-432 (1074)
183 PHA03155 hypothetical protein; 71.1 6.2 0.00014 30.2 3.6 26 71-96 8-33 (115)
184 PF08537 NBP1: Fungal Nap bind 70.7 41 0.0009 29.9 9.1 38 46-83 118-155 (323)
185 PF14915 CCDC144C: CCDC144C pr 70.5 53 0.0011 29.1 9.6 61 59-119 181-241 (305)
186 PF09738 DUF2051: Double stran 70.4 38 0.00083 29.6 8.8 52 74-125 115-166 (302)
187 PF01486 K-box: K-box region; 70.0 27 0.0006 24.9 6.7 29 88-116 71-99 (100)
188 PHA03162 hypothetical protein; 69.9 3.6 7.8E-05 32.3 2.2 27 68-94 10-36 (135)
189 PF14282 FlxA: FlxA-like prote 69.8 41 0.00089 24.7 8.0 27 98-124 50-76 (106)
190 PRK02224 chromosome segregatio 69.1 89 0.0019 30.0 11.8 22 110-131 437-458 (880)
191 PHA03161 hypothetical protein; 69.1 58 0.0013 26.1 9.2 75 59-135 44-118 (150)
192 KOG2010 Double stranded RNA bi 68.9 58 0.0012 29.5 9.7 66 71-138 154-219 (405)
193 PF07407 Seadorna_VP6: Seadorn 68.5 12 0.00025 33.9 5.3 26 79-104 33-58 (420)
194 PF15035 Rootletin: Ciliary ro 68.4 49 0.0011 26.8 8.5 26 78-103 88-113 (182)
195 TIGR02168 SMC_prok_B chromosom 68.3 1.2E+02 0.0026 29.3 12.4 24 100-123 916-939 (1179)
196 TIGR00414 serS seryl-tRNA synt 68.2 24 0.00052 31.7 7.4 43 77-119 43-89 (418)
197 COG3352 FlaC Putative archaeal 68.1 60 0.0013 26.2 8.8 67 70-136 78-145 (157)
198 PF07200 Mod_r: Modifier of ru 67.9 50 0.0011 24.9 8.2 28 72-99 56-83 (150)
199 COG1792 MreC Cell shape-determ 67.9 22 0.00048 30.5 6.8 44 70-117 65-108 (284)
200 PF05278 PEARLI-4: Arabidopsis 67.4 84 0.0018 27.3 12.6 56 70-125 206-261 (269)
201 PF05529 Bap31: B-cell recepto 67.2 60 0.0013 25.6 9.4 37 84-120 153-189 (192)
202 PF04999 FtsL: Cell division p 67.2 25 0.00054 24.8 6.0 37 83-119 33-69 (97)
203 TIGR02231 conserved hypothetic 66.9 1E+02 0.0022 28.1 11.7 47 81-127 127-173 (525)
204 PF04156 IncA: IncA protein; 66.9 59 0.0013 25.3 12.4 60 64-123 123-182 (191)
205 PF02994 Transposase_22: L1 tr 66.7 26 0.00056 31.1 7.2 56 80-135 146-201 (370)
206 KOG0995 Centromere-associated 66.6 27 0.00058 33.4 7.5 44 71-114 280-323 (581)
207 KOG1319 bHLHZip transcription 66.4 60 0.0013 27.3 8.7 33 50-82 58-90 (229)
208 PF01166 TSC22: TSC-22/dip/bun 66.3 12 0.00025 25.6 3.8 24 74-97 17-40 (59)
209 PF07926 TPR_MLP1_2: TPR/MLP1/ 66.3 54 0.0012 24.7 10.4 22 94-115 107-128 (132)
210 PF10168 Nup88: Nuclear pore c 66.2 1E+02 0.0022 30.0 11.5 24 101-124 602-625 (717)
211 PRK04863 mukB cell division pr 65.8 1.2E+02 0.0027 32.0 12.7 18 52-69 323-340 (1486)
212 KOG0243 Kinesin-like protein [ 65.7 39 0.00084 34.4 8.8 73 53-125 413-495 (1041)
213 PF00038 Filament: Intermediat 65.4 80 0.0017 26.4 11.9 69 55-123 182-254 (312)
214 KOG4571 Activating transcripti 65.4 97 0.0021 27.3 10.5 27 95-121 251-277 (294)
215 PLN02678 seryl-tRNA synthetase 64.9 28 0.0006 32.0 7.2 49 75-123 44-95 (448)
216 COG1382 GimC Prefoldin, chaper 64.8 55 0.0012 25.2 7.7 39 90-128 75-113 (119)
217 PF14645 Chibby: Chibby family 64.6 21 0.00045 27.0 5.4 28 98-125 77-104 (116)
218 PF07334 IFP_35_N: Interferon- 64.6 13 0.00029 26.5 4.0 13 104-116 5-17 (76)
219 PF05852 DUF848: Gammaherpesvi 64.3 71 0.0015 25.4 8.8 59 72-130 55-113 (146)
220 TIGR02209 ftsL_broad cell divi 64.3 38 0.00083 23.0 6.3 30 68-97 28-57 (85)
221 COG1382 GimC Prefoldin, chaper 64.1 47 0.001 25.5 7.2 40 68-107 67-106 (119)
222 PF04849 HAP1_N: HAP1 N-termin 64.1 71 0.0015 28.2 9.2 55 72-126 242-296 (306)
223 PTZ00454 26S protease regulato 64.0 39 0.00084 30.2 7.8 31 89-119 33-63 (398)
224 PF05266 DUF724: Protein of un 64.0 78 0.0017 25.7 11.6 61 66-126 126-186 (190)
225 KOG3650 Predicted coiled-coil 63.9 46 0.00099 25.3 7.0 41 79-119 64-104 (120)
226 PF06785 UPF0242: Uncharacteri 63.7 54 0.0012 29.8 8.5 73 49-125 74-160 (401)
227 PF10174 Cast: RIM-binding pro 63.6 54 0.0012 32.3 9.2 55 68-122 298-352 (775)
228 PF12737 Mating_C: C-terminal 63.2 25 0.00055 32.1 6.5 22 66-87 397-418 (419)
229 PF05667 DUF812: Protein of un 63.0 59 0.0013 31.0 9.1 46 71-116 335-380 (594)
230 KOG4643 Uncharacterized coiled 62.8 1.3E+02 0.0027 31.2 11.6 71 49-119 372-442 (1195)
231 PF03670 UPF0184: Uncharacteri 62.6 57 0.0012 23.7 7.7 46 73-118 28-73 (83)
232 PF11180 DUF2968: Protein of u 62.3 90 0.002 25.9 12.8 73 54-126 109-181 (192)
233 KOG0980 Actin-binding protein 62.3 1.3E+02 0.0028 30.5 11.4 60 59-118 454-513 (980)
234 PF06810 Phage_GP20: Phage min 62.2 65 0.0014 25.3 8.0 37 66-102 29-68 (155)
235 PF06632 XRCC4: DNA double-str 62.2 39 0.00085 30.0 7.4 15 112-126 193-207 (342)
236 PRK14127 cell division protein 61.9 36 0.00077 25.7 6.1 21 103-123 48-68 (109)
237 KOG0288 WD40 repeat protein Ti 61.8 90 0.0019 29.0 9.7 28 69-96 46-73 (459)
238 PF13118 DUF3972: Protein of u 61.7 48 0.001 25.7 7.0 45 73-117 80-124 (126)
239 KOG1029 Endocytic adaptor prot 61.5 1.5E+02 0.0032 30.1 11.6 35 104-138 435-469 (1118)
240 KOG4643 Uncharacterized coiled 61.4 50 0.0011 33.9 8.6 31 69-99 528-558 (1195)
241 PRK14127 cell division protein 61.4 36 0.00079 25.6 6.1 26 73-98 32-57 (109)
242 PF11365 DUF3166: Protein of u 61.4 54 0.0012 24.3 6.9 27 74-100 18-44 (96)
243 PF06698 DUF1192: Protein of u 61.3 38 0.00082 23.0 5.6 24 73-96 23-46 (59)
244 PF11500 Cut12: Spindle pole b 61.2 83 0.0018 25.1 9.0 55 47-101 81-135 (152)
245 PF10267 Tmemb_cc2: Predicted 61.1 1.3E+02 0.0029 27.4 16.1 9 107-115 277-285 (395)
246 TIGR02338 gimC_beta prefoldin, 60.6 59 0.0013 23.7 7.0 41 88-128 70-110 (110)
247 PRK03992 proteasome-activating 60.4 48 0.001 29.2 7.7 46 74-119 4-49 (389)
248 PF04340 DUF484: Protein of un 60.4 65 0.0014 26.1 7.9 42 73-118 42-83 (225)
249 PF02403 Seryl_tRNA_N: Seryl-t 60.1 60 0.0013 23.1 8.3 59 68-126 40-101 (108)
250 COG3879 Uncharacterized protei 60.0 97 0.0021 26.6 9.1 47 75-121 54-104 (247)
251 KOG2129 Uncharacterized conser 59.8 16 0.00036 34.0 4.7 46 74-119 46-91 (552)
252 PF10211 Ax_dynein_light: Axon 59.6 92 0.002 25.1 10.2 38 73-110 122-159 (189)
253 PF10828 DUF2570: Protein of u 59.6 68 0.0015 23.5 9.5 69 73-146 34-102 (110)
254 KOG1103 Predicted coiled-coil 59.2 1.2E+02 0.0026 28.0 10.0 42 77-118 138-179 (561)
255 PF09730 BicD: Microtubule-ass 59.2 48 0.001 32.5 7.9 47 79-125 98-147 (717)
256 PF04880 NUDE_C: NUDE protein, 59.0 21 0.00046 28.8 4.8 26 96-122 28-53 (166)
257 PF04859 DUF641: Plant protein 58.5 43 0.00093 26.0 6.2 41 78-118 80-120 (131)
258 PF11544 Spc42p: Spindle pole 58.5 65 0.0014 23.0 9.0 54 72-126 6-59 (76)
259 PRK05431 seryl-tRNA synthetase 58.5 1.4E+02 0.003 27.0 10.4 46 77-122 41-89 (425)
260 PF07558 Shugoshin_N: Shugoshi 58.3 12 0.00025 23.9 2.6 41 53-94 4-44 (46)
261 PF09728 Taxilin: Myosin-like 58.3 60 0.0013 28.2 7.8 52 72-123 245-296 (309)
262 KOG3433 Protein involved in me 58.2 1.1E+02 0.0024 25.6 9.1 65 60-124 105-169 (203)
263 KOG0946 ER-Golgi vesicle-tethe 58.0 1.1E+02 0.0023 30.9 10.0 52 68-119 668-719 (970)
264 PF14282 FlxA: FlxA-like prote 57.7 73 0.0016 23.3 7.1 45 74-118 29-77 (106)
265 KOG4674 Uncharacterized conser 57.7 81 0.0018 34.1 9.7 64 63-126 1235-1298(1822)
266 smart00787 Spc7 Spc7 kinetocho 57.7 80 0.0017 27.6 8.5 52 74-125 147-198 (312)
267 PF15070 GOLGA2L5: Putative go 57.1 74 0.0016 30.5 8.7 56 70-125 14-69 (617)
268 PF10211 Ax_dynein_light: Axon 56.9 1E+02 0.0022 24.8 10.9 53 67-119 123-176 (189)
269 PF13863 DUF4200: Domain of un 56.8 73 0.0016 23.1 9.5 11 105-115 94-104 (126)
270 PRK10636 putative ABC transpor 56.6 71 0.0015 30.0 8.5 57 71-127 563-626 (638)
271 cd07429 Cby_like Chibby, a nuc 56.6 31 0.00067 26.1 5.0 29 96-124 76-104 (108)
272 TIGR02977 phageshock_pspA phag 56.6 1.1E+02 0.0023 24.9 10.4 50 71-120 99-148 (219)
273 PF05278 PEARLI-4: Arabidopsis 56.6 1.3E+02 0.0029 26.1 11.3 60 69-128 198-257 (269)
274 PF02388 FemAB: FemAB family; 56.4 73 0.0016 28.4 8.2 53 71-123 242-297 (406)
275 PF05837 CENP-H: Centromere pr 56.2 75 0.0016 23.3 7.0 28 73-100 19-46 (106)
276 KOG0161 Myosin class II heavy 55.8 2.1E+02 0.0045 31.4 12.4 50 78-127 1484-1540(1930)
277 KOG4797 Transcriptional regula 55.6 31 0.00067 26.5 4.9 26 72-97 68-93 (123)
278 PF10205 KLRAQ: Predicted coil 55.4 87 0.0019 23.5 8.8 49 78-126 26-74 (102)
279 KOG0249 LAR-interacting protei 55.2 2.3E+02 0.0049 28.5 11.6 75 51-126 166-264 (916)
280 PF15290 Syntaphilin: Golgi-lo 55.2 89 0.0019 27.6 8.2 19 106-124 124-142 (305)
281 COG1196 Smc Chromosome segrega 55.1 2.3E+02 0.005 28.8 12.2 41 74-114 442-482 (1163)
282 PRK10963 hypothetical protein; 55.0 67 0.0014 26.3 7.2 39 76-118 42-80 (223)
283 PF05557 MAD: Mitotic checkpoi 55.0 70 0.0015 30.5 8.3 27 72-98 504-530 (722)
284 PRK05892 nucleoside diphosphat 54.6 1E+02 0.0022 24.2 8.7 56 71-126 11-74 (158)
285 PF07200 Mod_r: Modifier of ru 54.4 91 0.002 23.5 8.2 32 75-106 52-83 (150)
286 PTZ00454 26S protease regulato 54.3 77 0.0017 28.4 8.0 30 94-123 31-60 (398)
287 PRK05431 seryl-tRNA synthetase 53.9 1.7E+02 0.0037 26.4 11.0 57 70-126 41-100 (425)
288 PRK13922 rod shape-determining 53.9 48 0.001 27.5 6.3 35 88-122 72-109 (276)
289 KOG0161 Myosin class II heavy 53.9 1.4E+02 0.0029 32.7 10.7 41 63-103 956-996 (1930)
290 PF06216 RTBV_P46: Rice tungro 53.7 79 0.0017 27.9 7.7 34 71-104 64-97 (389)
291 KOG3335 Predicted coiled-coil 53.7 36 0.00079 28.0 5.3 67 47-140 88-154 (181)
292 PF08961 DUF1875: Domain of un 53.6 4.4 9.5E-05 34.5 0.0 41 71-118 122-162 (243)
293 PF03980 Nnf1: Nnf1 ; InterPr 53.5 38 0.00082 24.5 5.0 31 90-120 78-108 (109)
294 PF01920 Prefoldin_2: Prefoldi 53.4 59 0.0013 22.6 5.9 36 90-125 67-102 (106)
295 PF15233 SYCE1: Synaptonemal c 53.1 74 0.0016 25.0 6.7 40 72-111 7-46 (134)
296 COG2433 Uncharacterized conser 53.1 84 0.0018 30.5 8.3 28 72-99 437-464 (652)
297 PF05335 DUF745: Protein of un 52.9 1.3E+02 0.0027 24.7 9.5 58 67-124 63-120 (188)
298 KOG0946 ER-Golgi vesicle-tethe 52.9 2.1E+02 0.0046 29.0 11.1 57 67-123 660-716 (970)
299 PF13870 DUF4201: Domain of un 52.7 1.1E+02 0.0024 23.9 8.1 42 78-119 84-125 (177)
300 PF13851 GAS: Growth-arrest sp 52.6 1.3E+02 0.0027 24.5 12.6 56 48-103 70-125 (201)
301 COG4985 ABC-type phosphate tra 52.5 35 0.00076 29.6 5.2 32 95-126 224-255 (289)
302 PF05812 Herpes_BLRF2: Herpesv 52.4 27 0.00058 26.9 4.1 23 94-116 5-27 (118)
303 TIGR03185 DNA_S_dndD DNA sulfu 52.3 1.6E+02 0.0035 27.7 10.1 23 72-94 210-232 (650)
304 PF05911 DUF869: Plant protein 52.2 91 0.002 30.8 8.6 24 95-118 137-160 (769)
305 KOG0995 Centromere-associated 52.1 1.7E+02 0.0036 28.2 10.0 50 76-125 278-327 (581)
306 PF10359 Fmp27_WPPW: RNA pol I 52.1 84 0.0018 28.7 8.0 57 72-128 171-229 (475)
307 PF10226 DUF2216: Uncharacteri 52.0 62 0.0013 26.9 6.4 34 86-119 109-142 (195)
308 COG1730 GIM5 Predicted prefold 52.0 1E+02 0.0023 24.2 7.5 32 80-111 103-134 (145)
309 PRK14160 heat shock protein Gr 51.9 1.3E+02 0.0029 25.0 8.5 44 72-115 55-98 (211)
310 PF06216 RTBV_P46: Rice tungro 51.8 1.4E+02 0.003 26.5 8.8 32 72-103 79-110 (389)
311 PF10186 Atg14: UV radiation r 51.7 1.3E+02 0.0028 24.4 12.0 43 70-112 62-104 (302)
312 PF05622 HOOK: HOOK protein; 51.3 5 0.00011 38.2 0.0 43 60-102 314-356 (713)
313 KOG3156 Uncharacterized membra 51.0 1.3E+02 0.0029 25.5 8.3 45 82-126 98-143 (220)
314 PF07047 OPA3: Optic atrophy 3 50.9 39 0.00084 25.8 4.9 19 71-89 112-130 (134)
315 KOG3650 Predicted coiled-coil 50.8 79 0.0017 24.0 6.4 38 70-107 69-106 (120)
316 PF04871 Uso1_p115_C: Uso1 / p 50.8 1.1E+02 0.0024 23.5 12.6 63 71-133 55-118 (136)
317 PF07058 Myosin_HC-like: Myosi 50.7 56 0.0012 29.3 6.3 42 80-121 2-43 (351)
318 PF03961 DUF342: Protein of un 50.7 1.3E+02 0.0029 26.9 9.0 56 70-125 347-408 (451)
319 PRK11546 zraP zinc resistance 50.6 1.2E+02 0.0025 24.0 7.6 46 74-119 64-109 (143)
320 PF14988 DUF4515: Domain of un 50.6 1.3E+02 0.0028 24.7 8.2 47 73-119 151-197 (206)
321 PRK11147 ABC transporter ATPas 50.3 1E+02 0.0022 28.8 8.5 54 73-126 570-629 (635)
322 PF08826 DMPK_coil: DMPK coile 50.2 78 0.0017 21.5 7.7 42 83-124 16-57 (61)
323 KOG0239 Kinesin (KAR3 subfamil 50.2 2.1E+02 0.0045 27.8 10.6 30 73-102 243-272 (670)
324 PF14817 HAUS5: HAUS augmin-li 49.7 1.4E+02 0.003 28.8 9.3 19 76-94 84-102 (632)
325 PF09726 Macoilin: Transmembra 49.7 53 0.0011 31.9 6.6 19 75-93 422-440 (697)
326 PRK14872 rod shape-determining 49.6 53 0.0012 29.3 6.1 32 81-112 60-94 (337)
327 KOG0483 Transcription factor H 49.6 47 0.001 27.4 5.5 40 90-129 110-149 (198)
328 PF04136 Sec34: Sec34-like fam 49.4 1.3E+02 0.0027 23.6 8.8 56 71-126 21-76 (157)
329 PF05600 DUF773: Protein of un 49.3 1.1E+02 0.0024 28.5 8.4 49 70-118 431-479 (507)
330 PRK03992 proteasome-activating 49.3 75 0.0016 28.0 7.1 38 75-112 12-49 (389)
331 PF04899 MbeD_MobD: MbeD/MobD 49.2 88 0.0019 21.8 9.2 41 85-125 21-61 (70)
332 PF04012 PspA_IM30: PspA/IM30 49.2 1.4E+02 0.0029 23.9 9.0 58 73-130 100-159 (221)
333 TIGR00606 rad50 rad50. This fa 48.7 2.6E+02 0.0056 28.8 11.5 33 59-91 845-877 (1311)
334 TIGR01843 type_I_hlyD type I s 48.5 1.7E+02 0.0037 24.9 10.6 8 127-134 276-283 (423)
335 PF08961 DUF1875: Domain of un 48.4 5.9 0.00013 33.7 0.0 26 72-97 130-155 (243)
336 PF13815 Dzip-like_N: Iguana/D 47.7 1.1E+02 0.0024 22.5 8.1 39 81-119 76-114 (118)
337 KOG0288 WD40 repeat protein Ti 47.5 1.9E+02 0.004 27.0 9.3 44 74-117 30-73 (459)
338 PF01486 K-box: K-box region; 47.4 46 0.00099 23.7 4.5 23 72-94 76-98 (100)
339 PHA03155 hypothetical protein; 47.2 30 0.00064 26.6 3.6 21 80-100 10-30 (115)
340 KOG0933 Structural maintenance 47.2 58 0.0012 33.4 6.5 37 78-114 822-858 (1174)
341 PF08232 Striatin: Striatin fa 46.7 1.3E+02 0.0028 23.0 8.4 12 103-114 57-68 (134)
342 PRK15396 murein lipoprotein; P 46.5 1E+02 0.0023 21.9 7.8 39 72-110 26-64 (78)
343 COG4372 Uncharacterized protei 46.4 2.5E+02 0.0055 26.2 10.8 35 78-112 144-178 (499)
344 PF06103 DUF948: Bacterial pro 46.3 97 0.0021 21.4 7.9 52 73-124 28-79 (90)
345 PF05929 Phage_GPO: Phage caps 46.2 1.6E+02 0.0036 25.5 8.5 61 70-130 191-252 (276)
346 PF14775 NYD-SP28_assoc: Sperm 46.2 89 0.0019 20.9 7.5 36 80-116 22-57 (60)
347 KOG0999 Microtubule-associated 46.2 72 0.0016 31.0 6.7 37 83-119 154-190 (772)
348 PRK14148 heat shock protein Gr 46.1 1.1E+02 0.0025 25.1 7.2 9 120-128 91-99 (195)
349 COG2900 SlyX Uncharacterized p 46.1 1.1E+02 0.0023 21.8 8.4 54 73-126 3-56 (72)
350 PRK11546 zraP zinc resistance 46.1 1.5E+02 0.0032 23.4 7.7 29 45-73 44-72 (143)
351 KOG1318 Helix loop helix trans 45.7 2.4E+02 0.0052 26.0 9.8 56 3-60 188-252 (411)
352 PF06428 Sec2p: GDP/GTP exchan 45.5 75 0.0016 23.5 5.5 23 97-119 42-64 (100)
353 KOG4360 Uncharacterized coiled 45.4 1.3E+02 0.0028 28.9 8.1 42 74-115 222-263 (596)
354 PF12709 Kinetocho_Slk19: Cent 45.4 1.2E+02 0.0026 22.2 8.7 43 69-111 40-82 (87)
355 TIGR03495 phage_LysB phage lys 45.4 1.5E+02 0.0032 23.2 7.7 8 104-111 87-94 (135)
356 KOG3433 Protein involved in me 45.4 1.8E+02 0.0039 24.3 10.0 25 72-96 82-106 (203)
357 PF10174 Cast: RIM-binding pro 45.3 1.7E+02 0.0036 29.0 9.3 50 73-122 359-408 (775)
358 PHA03162 hypothetical protein; 45.3 32 0.00069 27.1 3.6 21 95-115 16-36 (135)
359 COG1842 PspA Phage shock prote 45.2 1.8E+02 0.004 24.3 8.8 44 75-118 96-139 (225)
360 KOG0421 Ubiquitin-protein liga 45.2 17 0.00036 29.3 2.1 28 7-34 82-110 (175)
361 KOG0483 Transcription factor H 45.1 47 0.001 27.4 4.8 46 79-124 106-151 (198)
362 PF07334 IFP_35_N: Interferon- 45.0 54 0.0012 23.4 4.5 17 81-97 3-19 (76)
363 COG1729 Uncharacterized protei 44.9 1E+02 0.0022 26.6 7.0 28 73-101 58-85 (262)
364 PF06428 Sec2p: GDP/GTP exchan 44.9 1.3E+02 0.0027 22.3 8.3 59 72-130 9-68 (100)
365 KOG0837 Transcriptional activa 44.9 2.1E+02 0.0046 25.1 8.8 41 88-128 223-263 (279)
366 PF04871 Uso1_p115_C: Uso1 / p 44.8 1.4E+02 0.0031 22.9 10.6 12 101-112 64-75 (136)
367 PF07407 Seadorna_VP6: Seadorn 44.4 39 0.00086 30.6 4.5 31 72-102 33-63 (420)
368 PF14915 CCDC144C: CCDC144C pr 44.4 1.6E+02 0.0035 26.1 8.2 51 65-115 22-79 (305)
369 KOG4360 Uncharacterized coiled 44.3 1.9E+02 0.0042 27.7 9.1 48 71-118 198-245 (596)
370 PF04642 DUF601: Protein of un 44.2 35 0.00077 29.8 4.1 27 70-96 216-242 (311)
371 KOG1029 Endocytic adaptor prot 43.8 3.1E+02 0.0067 28.0 10.7 32 97-128 435-466 (1118)
372 PRK13923 putative spore coat p 43.6 88 0.0019 25.4 6.1 36 70-105 110-145 (170)
373 PF04999 FtsL: Cell division p 43.4 53 0.0011 23.1 4.3 25 73-97 44-68 (97)
374 PF04568 IATP: Mitochondrial A 43.4 1.4E+02 0.0029 22.2 7.5 46 54-99 52-97 (100)
375 PF08232 Striatin: Striatin fa 43.3 1.5E+02 0.0032 22.7 9.0 49 76-124 16-64 (134)
376 PLN02320 seryl-tRNA synthetase 43.1 2.9E+02 0.0063 26.0 10.3 44 79-122 108-153 (502)
377 PF12808 Mto2_bdg: Micro-tubul 42.9 47 0.001 22.0 3.6 26 73-98 24-49 (52)
378 PF12329 TMF_DNA_bd: TATA elem 42.9 1.1E+02 0.0024 21.1 8.6 50 77-126 11-60 (74)
379 PRK02224 chromosome segregatio 42.9 3.2E+02 0.0069 26.3 12.2 8 24-31 452-459 (880)
380 PF06008 Laminin_I: Laminin Do 42.7 1.5E+02 0.0033 24.5 7.6 56 73-128 54-109 (264)
381 PF07851 TMPIT: TMPIT-like pro 42.5 2.5E+02 0.0054 25.1 9.2 16 111-126 73-88 (330)
382 PF05700 BCAS2: Breast carcino 42.4 1.9E+02 0.0041 23.6 9.3 39 79-117 176-214 (221)
383 TIGR02132 phaR_Bmeg polyhydrox 42.3 1.4E+02 0.003 24.7 7.1 56 71-126 79-134 (189)
384 KOG0996 Structural maintenance 42.2 2.2E+02 0.0048 29.9 9.7 61 60-120 531-591 (1293)
385 PF15397 DUF4618: Domain of un 42.0 2.3E+02 0.0049 24.5 9.8 48 76-123 177-224 (258)
386 PRK11239 hypothetical protein; 41.8 55 0.0012 27.6 4.7 25 74-98 186-210 (215)
387 TIGR01461 greB transcription e 41.6 1.5E+02 0.0033 23.1 7.0 54 73-126 10-72 (156)
388 PF10212 TTKRSYEDQ: Predicted 41.6 2E+02 0.0044 27.3 8.8 46 76-121 432-477 (518)
389 PRK04778 septation ring format 41.5 2.3E+02 0.0049 26.4 9.2 57 72-128 311-377 (569)
390 PF12777 MT: Microtubule-bindi 41.4 2.4E+02 0.0052 24.5 9.4 54 46-99 215-270 (344)
391 PF01763 Herpes_UL6: Herpesvir 41.3 1.2E+02 0.0027 28.8 7.5 46 69-114 361-406 (557)
392 PF04375 HemX: HemX; InterPro 41.2 2.5E+02 0.0055 24.8 9.2 21 102-122 96-116 (372)
393 PF13805 Pil1: Eisosome compon 41.2 2.4E+02 0.0052 24.5 10.2 24 74-97 168-191 (271)
394 KOG0709 CREB/ATF family transc 41.2 1E+02 0.0023 28.8 6.8 55 44-98 249-313 (472)
395 PRK14160 heat shock protein Gr 40.9 1.7E+02 0.0038 24.4 7.6 15 76-90 66-80 (211)
396 PF09766 FimP: Fms-interacting 40.9 1.6E+02 0.0034 26.0 7.8 52 64-115 101-152 (355)
397 KOG0976 Rho/Rac1-interacting s 40.7 2E+02 0.0043 29.5 8.9 45 80-124 94-138 (1265)
398 COG4345 Uncharacterized protei 40.7 1.9E+02 0.004 23.8 7.5 57 74-133 121-177 (181)
399 PF09486 HrpB7: Bacterial type 40.6 1.9E+02 0.0041 23.1 8.9 45 71-115 79-123 (158)
400 COG3159 Uncharacterized protei 40.2 1.4E+02 0.0031 25.2 7.0 42 78-123 45-86 (218)
401 PF07889 DUF1664: Protein of u 40.2 1.5E+02 0.0032 22.9 6.6 61 74-134 57-117 (126)
402 PF10481 CENP-F_N: Cenp-F N-te 40.1 1.4E+02 0.0029 26.5 7.0 25 74-98 56-80 (307)
403 PF15619 Lebercilin: Ciliary p 40.0 2.1E+02 0.0044 23.4 9.6 24 101-124 166-189 (194)
404 PF04899 MbeD_MobD: MbeD/MobD 39.9 1.3E+02 0.0028 21.0 8.3 46 79-124 22-67 (70)
405 PF15058 Speriolin_N: Sperioli 39.9 49 0.0011 27.6 4.1 26 94-119 7-32 (200)
406 TIGR01010 BexC_CtrB_KpsE polys 39.8 2.4E+02 0.0053 24.2 9.2 53 73-125 172-233 (362)
407 PF06210 DUF1003: Protein of u 39.7 1.6E+02 0.0034 22.0 8.0 49 55-108 55-103 (108)
408 PF05300 DUF737: Protein of un 39.5 1.5E+02 0.0033 24.2 7.0 39 63-101 126-164 (187)
409 PF10226 DUF2216: Uncharacteri 39.4 2.3E+02 0.0049 23.7 8.3 53 47-99 20-76 (195)
410 PHA03011 hypothetical protein; 39.3 1.7E+02 0.0037 22.3 8.3 53 70-122 63-115 (120)
411 PF10498 IFT57: Intra-flagella 39.3 2.8E+02 0.0061 24.8 9.2 46 79-124 267-312 (359)
412 PF04012 PspA_IM30: PspA/IM30 39.3 2E+02 0.0043 23.0 10.3 47 75-121 95-141 (221)
413 PF04201 TPD52: Tumour protein 39.2 1.3E+02 0.0029 24.3 6.4 17 73-89 38-54 (162)
414 smart00340 HALZ homeobox assoc 39.1 85 0.0018 20.2 4.3 24 75-98 9-32 (44)
415 PRK10698 phage shock protein P 39.0 2.2E+02 0.0048 23.4 10.4 46 73-118 101-146 (222)
416 PF06818 Fez1: Fez1; InterPro 38.8 1.4E+02 0.0031 24.9 6.7 37 82-118 70-106 (202)
417 PF12711 Kinesin-relat_1: Kine 38.7 1.5E+02 0.0031 21.6 6.0 36 83-120 49-84 (86)
418 PF14303 NAM-associated: No ap 38.6 1.6E+02 0.0036 21.8 13.1 11 122-132 129-139 (154)
419 PF14077 WD40_alt: Alternative 38.4 37 0.0008 22.3 2.5 21 71-91 18-38 (48)
420 KOG3335 Predicted coiled-coil 38.4 1.5E+02 0.0034 24.4 6.7 20 72-91 114-133 (181)
421 KOG1265 Phospholipase C [Lipid 37.8 4.8E+02 0.01 27.0 12.6 71 47-117 1025-1100(1189)
422 TIGR01554 major_cap_HK97 phage 37.7 2.7E+02 0.0059 24.1 9.5 9 76-84 39-47 (378)
423 KOG3584 cAMP response element 37.6 1.4E+02 0.0031 26.6 6.8 29 94-122 314-342 (348)
424 PF14257 DUF4349: Domain of un 37.5 2.3E+02 0.0051 23.3 8.6 52 74-125 135-188 (262)
425 KOG0804 Cytoplasmic Zn-finger 37.5 2.4E+02 0.0051 26.6 8.5 22 93-114 390-411 (493)
426 PRK04863 mukB cell division pr 37.4 5.4E+02 0.012 27.5 12.5 13 78-90 362-374 (1486)
427 TIGR00606 rad50 rad50. This fa 37.3 4.8E+02 0.01 26.9 12.0 24 74-97 884-907 (1311)
428 PF10883 DUF2681: Protein of u 37.2 1.5E+02 0.0033 21.5 5.9 37 79-115 24-62 (87)
429 KOG4001 Axonemal dynein light 37.2 2.6E+02 0.0057 23.9 8.1 22 97-118 233-254 (259)
430 KOG2077 JNK/SAPK-associated pr 37.1 1.5E+02 0.0032 29.1 7.3 50 70-119 328-377 (832)
431 KOG1853 LIS1-interacting prote 37.0 2.6E+02 0.0057 24.7 8.3 18 80-97 93-110 (333)
432 COG4372 Uncharacterized protei 36.8 3.6E+02 0.0078 25.2 10.0 37 83-119 142-178 (499)
433 KOG0978 E3 ubiquitin ligase in 36.7 3.2E+02 0.0069 26.9 9.6 56 63-118 565-620 (698)
434 KOG2185 Predicted RNA-processi 36.6 2.7E+02 0.0059 26.0 8.7 38 57-94 399-436 (486)
435 TIGR03689 pup_AAA proteasome A 36.5 1.2E+02 0.0025 28.5 6.5 32 97-128 13-44 (512)
436 PRK09343 prefoldin subunit bet 36.4 1.8E+02 0.0039 21.7 6.8 42 87-128 73-114 (121)
437 PF13600 DUF4140: N-terminal d 36.0 1E+02 0.0023 21.7 4.9 21 73-93 72-92 (104)
438 PF08286 Spc24: Spc24 subunit 35.9 11 0.00024 27.9 -0.2 16 103-118 24-39 (118)
439 PRK09413 IS2 repressor TnpA; R 35.7 1.2E+02 0.0026 22.2 5.4 18 102-119 88-105 (121)
440 PF05565 Sipho_Gp157: Siphovir 35.6 2.1E+02 0.0046 22.3 8.3 56 83-145 52-109 (162)
441 KOG0933 Structural maintenance 35.6 5.3E+02 0.012 26.9 11.9 53 74-126 790-842 (1174)
442 KOG0018 Structural maintenance 35.5 5.3E+02 0.012 26.9 11.1 67 60-126 412-478 (1141)
443 COG4420 Predicted membrane pro 35.4 1.3E+02 0.0028 25.0 5.9 65 55-124 109-173 (191)
444 PRK15396 murein lipoprotein; P 35.3 1.6E+02 0.0035 20.9 7.3 22 73-94 34-55 (78)
445 PF05600 DUF773: Protein of un 35.2 3.1E+02 0.0067 25.6 9.0 50 68-117 443-492 (507)
446 cd07599 BAR_Rvs167p The Bin/Am 35.1 2.3E+02 0.0051 22.6 10.6 70 59-128 112-189 (216)
447 PF11382 DUF3186: Protein of u 35.1 1.6E+02 0.0034 25.5 6.7 25 73-97 34-58 (308)
448 PF09727 CortBP2: Cortactin-bi 35.0 2.6E+02 0.0057 23.1 10.8 64 54-119 98-175 (192)
449 PF08537 NBP1: Fungal Nap bind 34.9 2.1E+02 0.0046 25.6 7.5 48 79-126 176-223 (323)
450 TIGR01242 26Sp45 26S proteasom 34.9 1.2E+02 0.0025 26.2 5.9 31 89-119 10-40 (364)
451 COG2919 Septum formation initi 34.9 1.9E+02 0.0041 21.5 6.7 48 70-117 49-96 (117)
452 PF14712 Snapin_Pallidin: Snap 34.8 1.5E+02 0.0033 20.4 7.4 30 73-102 16-45 (92)
453 PF09766 FimP: Fms-interacting 34.8 2.7E+02 0.0058 24.6 8.2 17 67-83 125-141 (355)
454 PF01519 DUF16: Protein of unk 34.8 1.4E+02 0.003 22.5 5.5 22 78-99 53-74 (102)
455 PF06295 DUF1043: Protein of u 34.5 2E+02 0.0044 21.7 8.6 24 74-97 28-51 (128)
456 TIGR03689 pup_AAA proteasome A 34.5 1.3E+02 0.0028 28.2 6.4 37 83-119 6-42 (512)
457 PF04582 Reo_sigmaC: Reovirus 34.0 50 0.0011 29.4 3.5 67 72-138 92-158 (326)
458 PF10482 CtIP_N: Tumour-suppre 34.0 2E+02 0.0044 22.2 6.4 22 94-115 98-119 (120)
459 KOG0976 Rho/Rac1-interacting s 33.9 5.5E+02 0.012 26.5 11.0 26 44-69 99-124 (1265)
460 PRK14143 heat shock protein Gr 33.9 2.5E+02 0.0054 23.8 7.6 8 76-83 79-86 (238)
461 PF04420 CHD5: CHD5-like prote 33.8 1.3E+02 0.0028 23.5 5.5 42 74-115 43-89 (161)
462 PF10506 MCC-bdg_PDZ: PDZ doma 33.7 1.6E+02 0.0035 20.3 7.0 43 76-118 3-45 (67)
463 TIGR01000 bacteriocin_acc bact 33.5 3.5E+02 0.0076 24.2 10.2 31 105-135 297-329 (457)
464 PF07111 HCR: Alpha helical co 33.5 4.9E+02 0.011 25.8 11.4 51 51-101 481-544 (739)
465 KOG4807 F-actin binding protei 33.3 4E+02 0.0087 25.1 9.2 56 69-124 391-460 (593)
466 PF10168 Nup88: Nuclear pore c 32.9 3.7E+02 0.0081 26.3 9.5 45 74-118 561-605 (717)
467 PRK01156 chromosome segregatio 32.9 4.7E+02 0.01 25.4 12.9 46 93-138 417-463 (895)
468 COG5509 Uncharacterized small 32.9 87 0.0019 21.7 3.8 22 73-94 27-48 (65)
469 PF11853 DUF3373: Protein of u 32.9 41 0.00088 31.5 2.9 15 73-87 33-47 (489)
470 PF13805 Pil1: Eisosome compon 32.7 3.3E+02 0.0072 23.6 8.3 58 54-116 131-189 (271)
471 KOG1691 emp24/gp25L/p24 family 32.6 1.7E+02 0.0038 24.6 6.3 50 69-118 132-181 (210)
472 PRK11519 tyrosine kinase; Prov 32.5 4.3E+02 0.0094 25.3 9.8 24 74-97 270-293 (719)
473 PRK00409 recombination and DNA 32.5 4.3E+02 0.0094 25.9 9.9 34 51-84 517-550 (782)
474 PF08912 Rho_Binding: Rho Bind 32.5 1.8E+02 0.0038 20.4 6.7 33 76-108 1-33 (69)
475 PF05531 NPV_P10: Nucleopolyhe 32.4 1.8E+02 0.004 20.6 6.9 52 72-123 12-66 (75)
476 PF04859 DUF641: Plant protein 32.4 2.4E+02 0.0052 21.9 7.1 43 72-114 88-130 (131)
477 KOG2391 Vacuolar sorting prote 31.9 4E+02 0.0086 24.3 9.9 36 82-117 243-278 (365)
478 KOG0957 PHD finger protein [Ge 31.9 1.5E+02 0.0033 28.5 6.5 57 71-127 445-501 (707)
479 KOG4603 TBP-1 interacting prot 31.8 3E+02 0.0065 22.9 8.1 63 70-132 85-149 (201)
480 PF07767 Nop53: Nop53 (60S rib 31.8 2.8E+02 0.006 24.4 7.9 112 35-147 260-377 (387)
481 PF03962 Mnd1: Mnd1 family; I 31.7 2.7E+02 0.006 22.4 9.6 70 50-120 62-131 (188)
482 PF13094 CENP-Q: CENP-Q, a CEN 31.6 2.4E+02 0.0051 21.6 8.9 54 71-124 27-80 (160)
483 TIGR03319 YmdA_YtgF conserved 31.6 4.3E+02 0.0094 24.6 12.3 78 47-126 58-135 (514)
484 PRK14140 heat shock protein Gr 31.5 2.9E+02 0.0063 22.6 7.5 63 71-133 37-101 (191)
485 TIGR01242 26Sp45 26S proteasom 31.5 1.4E+02 0.0031 25.7 5.9 40 73-112 1-40 (364)
486 COG1792 MreC Cell shape-determ 31.4 1.8E+02 0.0039 24.9 6.5 41 78-122 66-106 (284)
487 PF14916 CCDC92: Coiled-coil d 31.3 1.3E+02 0.0028 20.5 4.5 35 70-104 2-40 (60)
488 COG1729 Uncharacterized protei 31.3 2.2E+02 0.0048 24.6 6.9 60 80-140 58-117 (262)
489 TIGR00414 serS seryl-tRNA synt 31.2 3.9E+02 0.0085 24.0 9.9 70 60-129 33-106 (418)
490 KOG0614 cGMP-dependent protein 31.1 2.5E+02 0.0055 27.4 7.7 82 69-150 22-103 (732)
491 PF15003 HAUS2: HAUS augmin-li 31.0 3.7E+02 0.0079 23.6 8.7 64 68-131 51-122 (277)
492 PF00261 Tropomyosin: Tropomyo 30.7 3E+02 0.0065 22.5 12.1 82 51-132 156-237 (237)
493 COG4238 Murein lipoprotein [Ce 30.7 2.1E+02 0.0044 20.6 7.3 47 71-117 25-71 (78)
494 PRK09413 IS2 repressor TnpA; R 30.6 1.5E+02 0.0033 21.7 5.2 36 73-108 73-108 (121)
495 PF15358 TSKS: Testis-specific 30.6 1.6E+02 0.0034 27.7 6.2 58 67-124 156-213 (558)
496 PRK09973 putative outer membra 30.5 2.1E+02 0.0046 20.7 7.1 44 79-122 25-68 (85)
497 PRK00106 hypothetical protein; 30.2 4.8E+02 0.01 24.7 12.5 77 47-125 86-162 (535)
498 PF08687 ASD2: Apx/Shroom doma 30.1 3.4E+02 0.0075 23.4 7.9 46 66-122 88-133 (264)
499 PRK01885 greB transcription el 30.1 2.7E+02 0.0058 21.8 7.2 54 73-126 12-74 (157)
500 PF13600 DUF4140: N-terminal d 30.1 1.9E+02 0.0041 20.3 5.5 34 71-104 70-103 (104)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=99.49 E-value=2.8e-13 Score=91.58 Aligned_cols=62 Identities=39% Similarity=0.484 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 47 INEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQEN 108 (153)
Q Consensus 47 ~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN 108 (153)
.|+|+.+|+++||+||++||.||+.|+.+||.+|..|+.+|..|..++..|..++..|..++
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999998877777666654
No 2
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.47 E-value=1e-12 Score=110.61 Aligned_cols=81 Identities=26% Similarity=0.352 Sum_probs=76.7
Q ss_pred chhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582 46 IINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDL 125 (153)
Q Consensus 46 ~~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~ 125 (153)
+.|+|-.||+++||++|+-+|.|||++++++|.++.+|+.+|..|..++..|+.+++.|+++|.+|..+++.++.-|.+.
T Consensus 65 S~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~ 144 (292)
T KOG4005|consen 65 SWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAEL 144 (292)
T ss_pred CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999888776655
Q ss_pred c
Q 041582 126 L 126 (153)
Q Consensus 126 ~ 126 (153)
.
T Consensus 145 ~ 145 (292)
T KOG4005|consen 145 K 145 (292)
T ss_pred H
Confidence 4
No 3
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.44 E-value=1e-12 Score=120.19 Aligned_cols=93 Identities=33% Similarity=0.451 Sum_probs=79.8
Q ss_pred chhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------H
Q 041582 46 IINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLK------------E 113 (153)
Q Consensus 46 ~~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr------------~ 113 (153)
..--||+.|||+||+||..||+|||+|+..||.+++.|..||+.|+.++..|+++...|+.||..|+ .
T Consensus 277 ~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kvpsp~~~~qKk~R 356 (655)
T KOG4343|consen 277 IKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKVPSPKGRNQKKKR 356 (655)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccccCCCcccccccch
Confidence 4445678899999999999999999999999999999999999999999999999999999999986 3
Q ss_pred HHHHHHHHHHHhc---c-CcccccccCCC
Q 041582 114 KVSSLQLVISDLL---A-PLRGLEEVNGN 138 (153)
Q Consensus 114 ~l~~Lq~~L~d~~---~-~~~~~~~~~~n 138 (153)
++.+....|++++ + ||.+.+..+++
T Consensus 357 kvvaimv~maFi~f~~~~p~ni~nnln~s 385 (655)
T KOG4343|consen 357 KVVAIMVVMAFIIFNYGSPMNILNNLNIS 385 (655)
T ss_pred hhhhHHHHHHHHHHhccCcccccCCcccc
Confidence 4555555555555 3 99998887655
No 4
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.43 E-value=1.4e-12 Score=88.08 Aligned_cols=63 Identities=40% Similarity=0.546 Sum_probs=56.9
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 47 INEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENS 109 (153)
Q Consensus 47 ~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~ 109 (153)
.+.|+.+|+++||+||++||.||+.|+++|+.+|..|+.+|..|..++..|...+..|..+|.
T Consensus 2 ~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 2 KEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 456889999999999999999999999999999999999999999999999988888888873
No 5
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.20 E-value=1.4e-10 Score=76.19 Aligned_cols=52 Identities=44% Similarity=0.562 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 47 INEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLE 99 (153)
Q Consensus 47 ~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~ 99 (153)
.++++.||. +||+||++||.||+.++.+|+.+|..|+.+|..|..++..|+.
T Consensus 2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 2 DEEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467788888 9999999999999999999999999999999999999887754
No 6
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.19 E-value=4.1e-11 Score=103.31 Aligned_cols=58 Identities=34% Similarity=0.432 Sum_probs=51.5
Q ss_pred ccchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 44 ASIINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESN 101 (153)
Q Consensus 44 ~~~~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~ 101 (153)
....-.||+-|++||||+||.+|+|||+|+.+||.+|..|+.+|..|..++..|.+-|
T Consensus 285 aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLY 342 (348)
T KOG3584|consen 285 AEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELY 342 (348)
T ss_pred chhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHh
Confidence 3455567888999999999999999999999999999999999999999998886544
No 7
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=99.10 E-value=1.4e-10 Score=104.64 Aligned_cols=70 Identities=31% Similarity=0.414 Sum_probs=57.8
Q ss_pred chhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 46 IINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVI 122 (153)
Q Consensus 46 ~~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L 122 (153)
....||.||+|+|.+||+.||+|||+|++.||.+|....++|++|.+++.+|+. +|..|-++|..||+++
T Consensus 247 EriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~-------~N~sLl~qL~klQt~v 316 (472)
T KOG0709|consen 247 ERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELEL-------SNRSLLAQLKKLQTLV 316 (472)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhh-------ccHHHHHHHHHHHHHH
Confidence 456678899999999999999999999999999999999999999999987755 4555555555554443
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.11 E-value=2.8e-08 Score=71.72 Aligned_cols=55 Identities=31% Similarity=0.419 Sum_probs=45.7
Q ss_pred chhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 46 IINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLES 100 (153)
Q Consensus 46 ~~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~ 100 (153)
..+-|..||.++||.+|+.||.||..++.+|+.++..|..+...|..++..+...
T Consensus 26 ~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e 80 (92)
T PF03131_consen 26 IAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQE 80 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556889999999999999999999999999999988887777766666555443
No 9
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.99 E-value=0.00011 Score=63.52 Aligned_cols=59 Identities=20% Similarity=0.275 Sum_probs=49.0
Q ss_pred cCCccchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 41 ETPASIINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLE 99 (153)
Q Consensus 41 ~~~~~~~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~ 99 (153)
+.+....+.+..|..+.|..+|.|.|+||++..+.|+-++..|+.+|.+|+.++..|.+
T Consensus 218 ~~~~~~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~ler 276 (294)
T KOG4571|consen 218 AHPYKTPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELER 276 (294)
T ss_pred CCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666788888999999999999999999999999999999888876543
No 10
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=97.98 E-value=3e-05 Score=66.35 Aligned_cols=64 Identities=30% Similarity=0.478 Sum_probs=50.1
Q ss_pred HHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 49 EKRLK-RVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 49 ~KR~R-R~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
..|.. ..++||++|.+||.||.+++..||.+|..|..+|..|...+.. |+..+..+.+.+..+.
T Consensus 204 ~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~--------------l~~~v~e~k~~V~~hi 268 (279)
T KOG0837|consen 204 KIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSK--------------LKEQVAELKQKVMEHI 268 (279)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHH--------------HHHHHHHHHHHHHHHH
Confidence 33444 4799999999999999999999999999999999888777765 4555555555555554
No 11
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.28 E-value=0.0038 Score=48.70 Aligned_cols=68 Identities=25% Similarity=0.343 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 47 INEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLV 121 (153)
Q Consensus 47 ~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~ 121 (153)
.-.|-.||-++||=-|+-+|-|+...-.+||.+-..|..+...|..+ +..+..|-..++.+...|+..
T Consensus 50 vrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e-------~s~~~~E~da~k~k~e~l~~~ 117 (135)
T KOG4196|consen 50 VRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEE-------NSRLRRELDAYKSKYEALQNS 117 (135)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhh
Confidence 34577789999999999999999998888876655555544444443 334445555566666655533
No 12
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=97.21 E-value=0.006 Score=51.87 Aligned_cols=52 Identities=23% Similarity=0.315 Sum_probs=43.9
Q ss_pred chhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 46 IINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISL 97 (153)
Q Consensus 46 ~~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L 97 (153)
..+++=.-|.-+|=++++|||.+.+...+++..+|..|+.||..|+.++..|
T Consensus 190 ~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l 241 (269)
T KOG3119|consen 190 KKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQL 241 (269)
T ss_pred cCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445545577789999999999999999999999999999999888887754
No 13
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=97.11 E-value=0.0058 Score=42.33 Aligned_cols=63 Identities=24% Similarity=0.295 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccc
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLEEV 135 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~~~ 135 (153)
+..|+.+|..|-.....|..++..|..+...+..|+..|.++....+..+.-++..+..||+.
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq~ 64 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQH 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 567888888888888888888888888888999999999999999999988888887777765
No 14
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.74 E-value=0.013 Score=41.04 Aligned_cols=57 Identities=26% Similarity=0.343 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLES-------NHQIVQENSQLKEKVSSLQLVISDLLAP 128 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~-------~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~ 128 (153)
-++.||.+|..+-..+..|..++..|.++ ...|..||..|+.+-...+.+|..+++.
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667776666555555555555555555 5566666666666666666666665544
No 15
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.60 E-value=0.021 Score=40.52 Aligned_cols=57 Identities=26% Similarity=0.369 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPL 129 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~ 129 (153)
+.-|.-+|+.|...|+.|..+...++.....|..||..|+.+-...+.+|.-+++.|
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455677889999999999999999999999999999999999999998888888774
No 16
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.60 E-value=0.025 Score=39.66 Aligned_cols=53 Identities=28% Similarity=0.320 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
.-+.-|..++..|+.+|..|..+...|...+..|..+-.....++..|-..|.
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45667778888888888888888888888888888888877777777665554
No 17
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=96.55 E-value=0.006 Score=57.43 Aligned_cols=67 Identities=27% Similarity=0.298 Sum_probs=53.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhc
Q 041582 53 KRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL-QLVISDLL 126 (153)
Q Consensus 53 RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L-q~~L~d~~ 126 (153)
||.=|||.||+++|+||..-+..||..|..|+.+-.+|..+-. .+..+-..++.++..| +.++.++.
T Consensus 493 RRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~-------~~d~~L~~~kqqls~L~~~Vf~~lr 560 (604)
T KOG3863|consen 493 RRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERD-------ELDSTLGVMKQQLSELYQEVFQQLR 560 (604)
T ss_pred ccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6888999999999999999999999999999999888777654 3445666677777777 44444444
No 18
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=96.49 E-value=0.025 Score=40.67 Aligned_cols=57 Identities=25% Similarity=0.377 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPL 129 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~ 129 (153)
+.-|.-+|+.|+.+|..|..++..+......|..||..|+.+-...+.+|..+++-|
T Consensus 20 I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556666777777777777777777777789999999999999999998888764
No 19
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=96.46 E-value=0.021 Score=43.10 Aligned_cols=47 Identities=26% Similarity=0.429 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
.+..||.++..+..+...|+..+..|.+++..|..||..||..+..+
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777777777777777666666666666666666655
No 20
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=96.44 E-value=0.023 Score=42.59 Aligned_cols=47 Identities=28% Similarity=0.471 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
.+..||.++..|-.+...|+..+..|.+++..|..||..|+..|..+
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555444444
No 21
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=95.98 E-value=0.069 Score=39.98 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041582 75 ELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLA 127 (153)
Q Consensus 75 eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~ 127 (153)
+|=..+..|+.....|..++..|......|..||..|+.+-..|+.+|.....
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56678999999999999999999999999999999999999999999998765
No 22
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=95.22 E-value=0.19 Score=37.98 Aligned_cols=53 Identities=17% Similarity=0.231 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
.+|=.++..|+.....|..++..|......|..||..|+.+-..|+..|....
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35667899999999999999999999999999999999999999999999763
No 23
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.07 E-value=0.13 Score=33.01 Aligned_cols=41 Identities=20% Similarity=0.258 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 82 HVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVI 122 (153)
Q Consensus 82 ~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L 122 (153)
+|+.+...|+.....|...+..|..||..|++++..|...|
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46677777888888888888888999999999998887655
No 24
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=94.69 E-value=0.16 Score=38.62 Aligned_cols=46 Identities=22% Similarity=0.249 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 79 QVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 79 kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
+|..|+.....|.++++.|.++...|..||..|+-+...|+.+|.+
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 3444444445555555555555556666666666666666666665
No 25
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=94.61 E-value=0.5 Score=32.72 Aligned_cols=55 Identities=20% Similarity=0.300 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDL 125 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~ 125 (153)
..++.|-.....|+.+|..|..++..+..+...|...|..-+.++..+-.+|.-+
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4678888999999999999999999999999999999999999999887776544
No 26
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=94.23 E-value=1.5 Score=31.71 Aligned_cols=78 Identities=18% Similarity=0.299 Sum_probs=68.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 49 EKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 49 ~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
.++..+.+.+=+++-..|.-+.....+++.++..|......|..++......+..|+.-|.++..+|......+..++
T Consensus 10 l~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL 87 (89)
T PF13747_consen 10 LTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRAVL 87 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777888888888888878888899999999999999999999999999999999999999999988877666655
No 27
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=94.22 E-value=0.0036 Score=55.68 Aligned_cols=56 Identities=34% Similarity=0.329 Sum_probs=49.0
Q ss_pred CCccchhHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 041582 42 TPASIINEKRLKRVISNRESARR---SRMRKKKLIEELQAQVNHVQ-TVNHQLSEKLISL 97 (153)
Q Consensus 42 ~~~~~~e~KR~RR~lkNReSArr---SR~RKk~~l~eLE~kv~~Le-~eN~~L~~~i~~L 97 (153)
......+.|+..|+..|+.+|.+ +|.+++.+...|..+|+.|+ .++..|..++..|
T Consensus 146 ~~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~L 205 (395)
T KOG1414|consen 146 VLTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPL 205 (395)
T ss_pred CCCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCcccccc
Confidence 34678899999999999999999 99999999999999999999 8877766666544
No 28
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=94.05 E-value=0.34 Score=36.91 Aligned_cols=47 Identities=26% Similarity=0.373 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSS 117 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~ 117 (153)
..+.+||.++..+-.+...|++.+..|.+++..|.-||..||.+|..
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 35789999999999999999999999999999999999999999988
No 29
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.03 E-value=2.6 Score=33.78 Aligned_cols=67 Identities=15% Similarity=0.088 Sum_probs=40.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 53 KRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 53 RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
..+...+..-+.-.......+.++..-++.|..|...|..++..++.+...|..||..|-.+.....
T Consensus 119 ~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 119 AELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRK 185 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555566666666666666666666777777777777777777766655443
No 30
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.80 E-value=0.71 Score=38.10 Aligned_cols=46 Identities=11% Similarity=0.190 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 70 KKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKV 115 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l 115 (153)
++.+..++..+..|+.+|.+|..++..++.+...|..+|..++..+
T Consensus 124 ~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 124 QQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666777776666666666666666666665543
No 31
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=93.73 E-value=1.9 Score=39.28 Aligned_cols=118 Identities=18% Similarity=0.186 Sum_probs=68.1
Q ss_pred CCCCCCCCCCCcccccCCCCCCCCCCCCCCcccccCCccchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 041582 7 GRFLSNSQFHVPVHIFSPNTSVSPRSGSALDEARETPASIINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHV--- 83 (153)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~L--- 83 (153)
..|++-.+|++|++.+.....++.- +.....-...+...++|..||+...-+==||-|.+=...+.+|-.-|-..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~s~~s~~--~~~~rt~~~~~~~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~ 265 (411)
T KOG1318|consen 188 NVYPSEGQFNVPMTGHDSASCPSQL--SIGPRTHPKTDATALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSE 265 (411)
T ss_pred ccccccCCCCCCCCccccccCcccc--CCCCCCCCCcccchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcc
Confidence 3455557888888887764422221 11111111344555666666666666777777777777777776644333
Q ss_pred -------------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 84 -------------QTVNHQLSEKLI---SLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 84 -------------e~eN~~L~~~i~---~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
...+..|.+..+ +++.....|+..|+.|..+++.|......+-
T Consensus 266 ~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n~~L~~rieeLk~~~~~~~ 324 (411)
T KOG1318|consen 266 DMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLESTNQELALRIEELKSEAGRHG 324 (411)
T ss_pred hhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 333444444333 3344455677778888888888776655554
No 32
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=93.66 E-value=0.28 Score=45.38 Aligned_cols=51 Identities=18% Similarity=0.145 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLV 121 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~ 121 (153)
....+||.+++.|+.+.+.|.++...++++...|+.||..|+.++..+...
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 356889999999999999999999999999999999999999999665443
No 33
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=93.59 E-value=1.2 Score=33.64 Aligned_cols=62 Identities=15% Similarity=0.220 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 65 SRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 65 SR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
|+.-....+..|+..++.+......|..+-..|......|..+|..+-.++..|++.|.++.
T Consensus 10 s~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~ 71 (107)
T PF09304_consen 10 SQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEAR 71 (107)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555555555555555555555555555555555555555544
No 34
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=93.41 E-value=0.86 Score=32.06 Aligned_cols=53 Identities=25% Similarity=0.378 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHh
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNH--------QIVQENSQLKEKVSSLQLVISDL 125 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~--------~L~~EN~~Lr~~l~~Lq~~L~d~ 125 (153)
+.+.+..+..|..||-.|+-+|-.|.+... .+..+|-.|+.++..|+..|...
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~ 62 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEK 62 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999988887655 46677777777777776555443
No 35
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=93.36 E-value=0.4 Score=41.05 Aligned_cols=54 Identities=26% Similarity=0.285 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
++++..+...|..++..|..++..+++....|+.||+.|.+.+..|-.-+.++.
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~ 197 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLK 197 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Confidence 344444445555555555555666666777788888888777655544444443
No 36
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=93.30 E-value=1.4 Score=30.53 Aligned_cols=54 Identities=19% Similarity=0.197 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 70 KKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
+.+++-+..++...+.+|..|..+-.....+....-.+|..|+.++..|+..|.
T Consensus 11 r~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 11 RNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777777777777777777777777777776554
No 37
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=93.14 E-value=0.73 Score=31.58 Aligned_cols=49 Identities=16% Similarity=0.284 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
+++.+||.++..++.-...|...+...+.+...|..+...|..++..+.
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5788888888888888888888888777777777777777777666665
No 38
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.83 E-value=3.6 Score=33.93 Aligned_cols=50 Identities=16% Similarity=0.116 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 70 KKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
.+...+|..++.........|..++..|.+++..+.+++..|+.++..++
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 117 NQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777777777777777777777777777777775
No 39
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=92.64 E-value=1.1 Score=38.72 Aligned_cols=76 Identities=22% Similarity=0.388 Sum_probs=60.0
Q ss_pred ccchhHHHHHHHHHhHH--HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 44 ASIINEKRLKRVISNRE--SARRSRMRKKKL-IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 44 ~~~~e~KR~RR~lkNRe--SArrSR~RKk~~-l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
....+.||.|-...--- --++.|+-+.+| +.+|+.+-+.|+.||..|+.+...|..+++.|..+-..|+++|..+.
T Consensus 67 EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~ 145 (292)
T KOG4005|consen 67 EEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELK 145 (292)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhH
Confidence 77777888774433222 233455556555 68999999999999999999999999999999999999999998884
No 40
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=92.54 E-value=0.99 Score=37.31 Aligned_cols=54 Identities=24% Similarity=0.354 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDL 125 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~ 125 (153)
-+++|+..-..|..+|..|...+..+.+....|..|+..|+.++..++..|...
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~a 62 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKA 62 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777777777777777777777777777776555443
No 41
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=92.46 E-value=1.2 Score=35.88 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 79 QVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 79 kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
....+..+|..|..++..|+.++..|..||..|..++..+.
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~ 138 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIE 138 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667778888888888888888888888888877776654
No 42
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=92.33 E-value=1.5 Score=31.46 Aligned_cols=48 Identities=25% Similarity=0.331 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQL 120 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~ 120 (153)
-+.|..++..|+.....|..++...+..+..|..||.-|..=+..|..
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366778888888888899999999999999999999999888888843
No 43
>PRK02119 hypothetical protein; Provisional
Probab=92.19 E-value=1.4 Score=30.81 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDL 125 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~ 125 (153)
+++.+||.++...+.-...|...+...+.+. ..|+.++..|..+|.++
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~i-------d~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVI-------DKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhh
Confidence 4566666666666666666666665555444 44455555555555444
No 44
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=91.98 E-value=3.1 Score=32.58 Aligned_cols=76 Identities=25% Similarity=0.224 Sum_probs=50.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 041582 54 RVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPL 129 (153)
Q Consensus 54 R~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~ 129 (153)
-...|.+.+-.--.-+++.+..|+.++..+..+...|...+..+......|..+-...+.++..|-....+...-|
T Consensus 35 ~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l 110 (140)
T PF10473_consen 35 MSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLL 110 (140)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3556666666666777777777777777777777777777777766666666666666666666655544444333
No 45
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=91.83 E-value=1.3 Score=31.86 Aligned_cols=44 Identities=23% Similarity=0.310 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEK 114 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~ 114 (153)
+-++.||.+|...-..+.-|..+|..|.+++..|..|+..++..
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~ 47 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQ 47 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34678899998888888888888888888888888877664333
No 46
>PRK11637 AmiB activator; Provisional
Probab=91.77 E-value=4.8 Score=35.75 Aligned_cols=58 Identities=7% Similarity=0.117 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 69 KKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 69 Kk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
-...+..|+.++..++.+...+..++..++.+...+..+-..++.++..++..|...+
T Consensus 73 ~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rl 130 (428)
T PRK11637 73 LLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQL 130 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666666666666666666666666655555444
No 47
>PF15294 Leu_zip: Leucine zipper
Probab=91.76 E-value=1 Score=39.05 Aligned_cols=51 Identities=27% Similarity=0.367 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 76 LQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 76 LE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
|..++..|+.||..|+.++..++.++...+.|+..|..+|..|+...++..
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~ 180 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQK 180 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 778899999999999999999999999999999999999999998555544
No 48
>PRK00295 hypothetical protein; Provisional
Probab=91.67 E-value=2.1 Score=29.43 Aligned_cols=47 Identities=11% Similarity=0.164 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSS 117 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~ 117 (153)
+++.+||.++...+.-...|...+...+.+...|..+-+.|..++..
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888888888888888888888776665555555544444444444
No 49
>PRK02793 phi X174 lysis protein; Provisional
Probab=91.60 E-value=1.8 Score=30.12 Aligned_cols=47 Identities=13% Similarity=0.151 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSS 117 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~ 117 (153)
+++.+||.++...+.-...|...+...+.+...|..+-+.|..++..
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777777777777777777777666555554444444444444333
No 50
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=91.58 E-value=3.5 Score=31.49 Aligned_cols=66 Identities=24% Similarity=0.287 Sum_probs=40.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 52 LKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSS 117 (153)
Q Consensus 52 ~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~ 117 (153)
..|=...|+.......++...++.|+..+..|+.++..+..++..++.....+..++..+...+..
T Consensus 47 ~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~ 112 (151)
T PF11559_consen 47 RDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQ 112 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666667666777777777777777666666666665555555554444444333
No 51
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=91.44 E-value=0.72 Score=30.66 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 68 RKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQL 120 (153)
Q Consensus 68 RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~ 120 (153)
|+..++.+|+.++..-. ..=...-.........|..||..|+++|..++.
T Consensus 1 kw~~Rl~ELe~klkaer---E~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 1 KWLLRLEELERKLKAER---EARSLDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred CHHHHHHHHHHHHHHhH---HhccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667788887766443 111112234556677888999999999987764
No 52
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=91.31 E-value=0.58 Score=40.01 Aligned_cols=38 Identities=26% Similarity=0.380 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 041582 79 QVNHVQTVNHQLSEKLISLLESNH----QIVQENSQLKEKVS 116 (153)
Q Consensus 79 kv~~Le~eN~~L~~~i~~L~~~~~----~L~~EN~~Lr~~l~ 116 (153)
.+..|.+||.+|+.++..|..+.. .+..||.+||+-|.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455677888888887766633333 37778888777543
No 53
>PRK11637 AmiB activator; Provisional
Probab=91.22 E-value=6.2 Score=35.06 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=44.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 54 RVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 54 R~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
.+.+............+..+.+++.++..+..+...+..++..++.+...+..+-..|..++..++..|....
T Consensus 51 ~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 51 SIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444555666666666666666666667776766777777777777777766666655544
No 54
>PRK00736 hypothetical protein; Provisional
Probab=91.02 E-value=2.3 Score=29.18 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVS 116 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~ 116 (153)
.++.+||.++...+.-...|...+..-+.+...|..+-+.|..++.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~ 50 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFL 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999988888888888777666555554444444444433
No 55
>PRK04325 hypothetical protein; Provisional
Probab=90.98 E-value=2.4 Score=29.57 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDL 125 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~ 125 (153)
++.+||.++...+.-...|...+..-+.+... |..++..|..+|.++
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~-------L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVARQQQTLDL-------LQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Confidence 47777777777777777777766655554444 444555555555444
No 56
>PRK04406 hypothetical protein; Provisional
Probab=90.91 E-value=2.4 Score=29.78 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
++.+||.++..++.-...|...+...+ .+...|+.++..|..+|.++.
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq-------~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQ-------LLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhc
Confidence 455566666655555555555555444 444555555555555555543
No 57
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=90.71 E-value=2.8 Score=32.51 Aligned_cols=55 Identities=25% Similarity=0.399 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 70 KKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
...++.++.++..|+.++..+-.+|..|+.++..|..+-..+..++..+...+.+
T Consensus 13 ~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee 67 (143)
T PF12718_consen 13 QDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEE 67 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777777777777777777777777777776666666666666544443
No 58
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=90.33 E-value=2.7 Score=30.54 Aligned_cols=42 Identities=26% Similarity=0.324 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Q 041582 81 NHVQTVNHQLSEKLISLLESN------HQIVQENSQLKEKVSSLQLVI 122 (153)
Q Consensus 81 ~~Le~eN~~L~~~i~~L~~~~------~~L~~EN~~Lr~~l~~Lq~~L 122 (153)
..+..+|..|..+|..|+.++ .....||..|++++..|+..-
T Consensus 20 ~~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 20 SYLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888887654 467899999999999887654
No 59
>PRK02119 hypothetical protein; Provisional
Probab=90.32 E-value=4.1 Score=28.37 Aligned_cols=54 Identities=11% Similarity=0.136 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccc
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLE 133 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~ 133 (153)
+..++.++..|+...+-....|..| -..-..-..++..|+..|..+...+..++
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~L-------N~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEEL-------NQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567777777776665555555443 22233344455667666666665555554
No 60
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=90.17 E-value=2.3 Score=39.39 Aligned_cols=20 Identities=15% Similarity=0.331 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSEK 93 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~ 93 (153)
..|..+-+.|..||..|+++
T Consensus 76 ~~l~~~N~~l~~eN~~L~~r 95 (472)
T TIGR03752 76 AKLISENEALKAENERLQKR 95 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555555553
No 61
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=90.07 E-value=0.6 Score=37.61 Aligned_cols=43 Identities=21% Similarity=0.404 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
++|+|.++++.-..|.-|..+|.+ ...|..++++||.++.+|+
T Consensus 2 LeD~EsklN~AIERnalLE~ELdE----KE~L~~~~QRLkDE~RDLK 44 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELDE----KENLREEVQRLKDELRDLK 44 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCH-----------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 689999999999999888888832 3345555555555555554
No 62
>PRK04406 hypothetical protein; Provisional
Probab=89.55 E-value=5.2 Score=28.09 Aligned_cols=55 Identities=15% Similarity=0.231 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccc
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLEE 134 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~~ 134 (153)
++.|+.++..|+...+-+...|..| -..-.....++..|+..|..+...+..+++
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~L-------N~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~ 60 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEEL-------NDALSQQQLLITKMQDQMKYVVGKVKNMDS 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3457777777776666555555443 233333445557777777766666555553
No 63
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=89.28 E-value=5.2 Score=37.77 Aligned_cols=69 Identities=20% Similarity=0.313 Sum_probs=38.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 54 RVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVI 122 (153)
Q Consensus 54 R~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L 122 (153)
.+++-..........-+.+++.|+..+...+.++..|..+...+......+..|+..|..+...+...+
T Consensus 154 eL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri 222 (546)
T PF07888_consen 154 ELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRI 222 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555566666666666666666666555555555555555555555544444333
No 64
>PRK00846 hypothetical protein; Provisional
Probab=88.78 E-value=4.3 Score=28.89 Aligned_cols=49 Identities=16% Similarity=0.164 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
+++.+||.++...+.-...|...+. ....+...|+.++..|...|.++.
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~-------~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALA-------DARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555555555555555555544 444555566666666666666665
No 65
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=88.68 E-value=6 Score=33.68 Aligned_cols=52 Identities=13% Similarity=0.273 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
.+-+......-+....++..++..|..++..|..+...|+.++..|+..+..
T Consensus 203 N~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 203 NEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444443444444444555555555555555555555555554444444433
No 66
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=88.53 E-value=4.6 Score=35.62 Aligned_cols=46 Identities=24% Similarity=0.348 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
++|...+..|+.+|..|+.++......+..|..+|..|+.....++
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~ 68 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQ 68 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666666666666666666666554444
No 67
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=88.42 E-value=3.1 Score=37.47 Aligned_cols=52 Identities=21% Similarity=0.289 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 66 RMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSS 117 (153)
Q Consensus 66 R~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~ 117 (153)
=.|-+.+...||.-+..++.||..|..++..+.+++...+.|+..|-.++.+
T Consensus 122 f~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE 173 (401)
T PF06785_consen 122 FMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAE 173 (401)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 3566777788899999999999999999999999998888888887655543
No 68
>smart00338 BRLZ basic region leucin zipper.
Probab=88.41 E-value=2.9 Score=27.75 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 95 ISLLESNHQIVQENSQLKEKVSSLQLV 121 (153)
Q Consensus 95 ~~L~~~~~~L~~EN~~Lr~~l~~Lq~~ 121 (153)
..|+.+...|..+|..|+.++..|...
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~l~~e 55 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIERLRRE 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 69
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=88.28 E-value=13 Score=30.72 Aligned_cols=62 Identities=15% Similarity=0.236 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 65 SRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 65 SR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
.+..-...+..|+.+++.|+..|..|...+...+.+...|..+...+..-...|.-.|.+++
T Consensus 50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~ 111 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMI 111 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556666666666666666666666666666666555555554444444444444
No 70
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=88.26 E-value=9.9 Score=36.75 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKE 113 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~ 113 (153)
+-+..+..+|+.|...|+.++...++++..|+.|...|+.
T Consensus 541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666777777777777777777766666666655554
No 71
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=88.24 E-value=2.1 Score=32.85 Aligned_cols=42 Identities=31% Similarity=0.329 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Q 041582 83 VQTVNHQLSEKLISLLESNHQIVQENSQLKEK-----VSSLQLVISD 124 (153)
Q Consensus 83 Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~-----l~~Lq~~L~d 124 (153)
.+.|..-|+.+|.+|.+++..|+.||..||.- |..|...+..
T Consensus 65 VREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~spe~L~ql~~~~~~ 111 (123)
T KOG4797|consen 65 VREEVEVLKEQIRELEERNSALERENSLLKTLASPEQLAQLPAQLSP 111 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhccc
Confidence 34556677777888888888889999988854 4555555543
No 72
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=88.23 E-value=3.1 Score=34.70 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 041582 79 QVNHVQTVNHQLSEKLISLLESNH---QIVQENSQLKEKVS 116 (153)
Q Consensus 79 kv~~Le~eN~~L~~~i~~L~~~~~---~L~~EN~~Lr~~l~ 116 (153)
....+.+||..|++++..|+.+.. .+..||.+|+..+.
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555555555555544333 56677777776543
No 73
>PRK04325 hypothetical protein; Provisional
Probab=88.22 E-value=6 Score=27.58 Aligned_cols=54 Identities=11% Similarity=0.181 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccc
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLE 133 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~ 133 (153)
+..++.++..|+...+-+...|..| -..-..-..++..|+..|..+...+..++
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~tIe~L-------N~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDLIDGL-------NATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567777777776665555555444 22223334445666666666655555554
No 74
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=88.16 E-value=0.76 Score=31.40 Aligned_cols=30 Identities=33% Similarity=0.401 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 85 TVNHQLSEKLISLLESNHQIVQENSQLKEK 114 (153)
Q Consensus 85 ~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~ 114 (153)
.|...|+.+|..|..++..|+.||..||..
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566777777777777888888888764
No 75
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=87.69 E-value=4.9 Score=38.83 Aligned_cols=76 Identities=18% Similarity=0.205 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------cCcccc-cccCCCCCC
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL--------APLRGL-EEVNGNMNR 141 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~--------~~~~~~-~~~~~n~~~ 141 (153)
..+.+||.+-+.|..+.+++..+++++++.......|-..|+..++..+..+.++. .|++.| ++.+.-.+.
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl~LP~sllP~~~pr~l~p 172 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKLFLPFSLLPLQIPRELEP 172 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeccccCcccCcccCCC
Confidence 56789999999999999999999999999888888899999999998888887776 477754 233333444
Q ss_pred ccccc
Q 041582 142 PRAEA 146 (153)
Q Consensus 142 ~~~~~ 146 (153)
+..-+
T Consensus 173 p~~~~ 177 (907)
T KOG2264|consen 173 PSQIS 177 (907)
T ss_pred ccccC
Confidence 43333
No 76
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=87.57 E-value=14 Score=30.11 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=49.6
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Q 041582 48 NEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHV-------QTVNHQLSEKLISLLESNHQIV-------QENSQLKE 113 (153)
Q Consensus 48 e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~L-------e~eN~~L~~~i~~L~~~~~~L~-------~EN~~Lr~ 113 (153)
+-+-.+.+|....+-+-.+.+.+.+...|+.++..- +.+...|..++..|+++...+. .|...|+.
T Consensus 87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks 166 (190)
T PF05266_consen 87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKS 166 (190)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667778888888888888888888877755 5555555556666655543333 34455555
Q ss_pred HHHHHHHHHHHhc
Q 041582 114 KVSSLQLVISDLL 126 (153)
Q Consensus 114 ~l~~Lq~~L~d~~ 126 (153)
.+..+...+.++.
T Consensus 167 ~~~~l~~~~~~~e 179 (190)
T PF05266_consen 167 EAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
No 77
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=87.56 E-value=15 Score=30.39 Aligned_cols=55 Identities=16% Similarity=0.150 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLA 127 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~ 127 (153)
..+|..++..|..+...|...+..++.....+..+-..|..++..+.....++.+
T Consensus 51 ~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p 105 (251)
T PF11932_consen 51 KQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP 105 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555566655666555666666666666666555544444444
No 78
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=87.52 E-value=5.6 Score=27.14 Aligned_cols=53 Identities=9% Similarity=0.133 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041582 75 ELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLA 127 (153)
Q Consensus 75 eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~ 127 (153)
.|+.++..|+...+-+...|..|......-..+...|..++..|...|.++..
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 53 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELED 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 47889999999999988888888888888888888888888888888877653
No 79
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=87.44 E-value=17 Score=30.91 Aligned_cols=75 Identities=20% Similarity=0.262 Sum_probs=39.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Q 041582 50 KRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLE---------SNHQIVQENSQLKEKVSSLQL 120 (153)
Q Consensus 50 KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~---------~~~~L~~EN~~Lr~~l~~Lq~ 120 (153)
+-.+.+..-.+.+.+.-.-+...+++|+.+|..++.+...+..++..++. ++..|..|-..++.++..|..
T Consensus 31 ~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~ 110 (239)
T COG1579 31 KALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLED 110 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555556666666666666666666666666555443 233344444444444444444
Q ss_pred HHHH
Q 041582 121 VISD 124 (153)
Q Consensus 121 ~L~d 124 (153)
.|.+
T Consensus 111 el~~ 114 (239)
T COG1579 111 ELAE 114 (239)
T ss_pred HHHH
Confidence 3333
No 80
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=87.24 E-value=11 Score=28.66 Aligned_cols=52 Identities=19% Similarity=0.232 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 67 MRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 67 ~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
.|-..+.+.|..++..+..++..|...+..|..++..+..+...+..+...+
T Consensus 48 ~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l 99 (151)
T PF11559_consen 48 DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQL 99 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444433333333
No 81
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.17 E-value=6.7 Score=27.97 Aligned_cols=47 Identities=23% Similarity=0.305 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
-++.||.+|.+.-.-..-|.-++..|.++++.|..|-..+.....+|
T Consensus 5 v~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL 51 (79)
T COG3074 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREAL 51 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Confidence 45667777766666666666666666666666655555554444444
No 82
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=86.76 E-value=5.8 Score=30.90 Aligned_cols=47 Identities=26% Similarity=0.345 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKL--ISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i--~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
+..|+..+..|+.+...|.... ..|......|..|+..|..+|..|+
T Consensus 88 l~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 88 LAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443332 3344445555555555555555554
No 83
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=86.69 E-value=7.1 Score=36.87 Aligned_cols=62 Identities=15% Similarity=0.321 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582 64 RSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDL 125 (153)
Q Consensus 64 rSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~ 125 (153)
+.+..-.+.+.+....+..++++...+...+..+..+...|..||..|..+|..++.+|.+-
T Consensus 134 k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~E 195 (546)
T KOG0977|consen 134 KERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDE 195 (546)
T ss_pred HHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 33333344455566667777777777777888888888888888888888887777655443
No 84
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=86.47 E-value=0.41 Score=35.20 Aligned_cols=52 Identities=19% Similarity=0.318 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVI 122 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L 122 (153)
.|++.|...+..|..+|..|..++..|..+...+......|+..|...+...
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a 76 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETA 76 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhH
Confidence 5889999999999999999999999888888888777777777765554433
No 85
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=86.46 E-value=5.4 Score=26.37 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041582 97 LLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 97 L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
|+..+..|..+|..|+.++..|
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L 52 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQL 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 86
>PRK00846 hypothetical protein; Provisional
Probab=86.38 E-value=9.6 Score=27.13 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccc
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLE 133 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~ 133 (153)
++++.++..|+...+-....| ..|-..-......+..|+.+|.-+...+..++
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tI-------e~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 9 QALEARLVELETRLSFQEQAL-------TELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555555554444333333 33333444455566667666666666655555
No 87
>PRK02793 phi X174 lysis protein; Provisional
Probab=86.27 E-value=9 Score=26.56 Aligned_cols=53 Identities=11% Similarity=0.062 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
.+++.++..|+...+-....|..|......-..+...|..++..|..+|.++.
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35889999999999999999999888888888888888999888888887764
No 88
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=86.10 E-value=3.5 Score=34.58 Aligned_cols=25 Identities=24% Similarity=0.415 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 90 LSEKLISLLESNHQIVQENSQLKEK 114 (153)
Q Consensus 90 L~~~i~~L~~~~~~L~~EN~~Lr~~ 114 (153)
|.++.+.+..+++.|..|+..|+.+
T Consensus 184 l~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 184 LKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHH
Confidence 3333333333344444444444333
No 89
>PRK09039 hypothetical protein; Validated
Probab=86.07 E-value=20 Score=31.45 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 76 LQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 76 LE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
...+|..|..+...|+.++..|+.....++.+.+..+.++..|...|..++
T Consensus 135 ~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 135 ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666666666666666666666666666666666666655555443
No 90
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=85.92 E-value=4.3 Score=31.63 Aligned_cols=54 Identities=24% Similarity=0.385 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLES--NHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~--~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
+.+|..++..|..++..|..++..|... ...|..+...|+.++..|...|..+.
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555442 34556666666666666666655544
No 91
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=85.90 E-value=6.3 Score=32.65 Aligned_cols=53 Identities=25% Similarity=0.327 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
.+|-..|++|+.-|..|..++..|......+...|+.|..++..|+..+....
T Consensus 4 ~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Q 56 (193)
T PF14662_consen 4 SDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQ 56 (193)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777777777777777777777777777777766655443
No 92
>PRK00295 hypothetical protein; Provisional
Probab=85.70 E-value=9.3 Score=26.20 Aligned_cols=51 Identities=10% Similarity=0.143 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 76 LQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 76 LE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
++.++..|+...+-+...|..|......-..+...|+.++..|..+|.++.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 678899999999999988988888888878888889999999988888864
No 93
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=85.65 E-value=6.5 Score=34.61 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 83 VQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSS 117 (153)
Q Consensus 83 Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~ 117 (153)
.+.+...|..++..++.+++.+..||..|...|..
T Consensus 232 QQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ 266 (306)
T PF04849_consen 232 QQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQA 266 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34455556666666666777777777666666543
No 94
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=85.54 E-value=6.5 Score=37.13 Aligned_cols=68 Identities=22% Similarity=0.329 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCC
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLEEVNGNM 139 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~~~~~n~ 139 (153)
.+..|+.++..|+.+......++..|..++..+...+..|..+...|...+.++...|.-|+++..++
T Consensus 165 e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l 232 (546)
T PF07888_consen 165 EVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTL 232 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444445555555556666666666777777777777887777777776655443
No 95
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=85.40 E-value=5.3 Score=34.39 Aligned_cols=52 Identities=19% Similarity=0.266 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVI 122 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L 122 (153)
+..+++..+++.+..++..|..++..++..+..+..+-..|..+...|...+
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~ 186 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEML 186 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666667777777777777777766666666666666666555554443
No 96
>smart00340 HALZ homeobox associated leucin zipper.
Probab=85.20 E-value=2.1 Score=27.58 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 94 LISLLESNHQIVQENSQLKEKVSSLQLV 121 (153)
Q Consensus 94 i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~ 121 (153)
.+.|.+-+..|..||+.|..+++.|++.
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLral 34 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3557777888999999999999999864
No 97
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=85.12 E-value=3.4 Score=38.30 Aligned_cols=56 Identities=23% Similarity=0.299 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLES---------------NHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~---------------~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
..+.+++.++..|..+|..|+.+++.|+++ ...+..|-..|+.++..++.+|.++.
T Consensus 66 a~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 66 AEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678888888888888888888888652 22344455555555555555555544
No 98
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=85.12 E-value=10 Score=27.93 Aligned_cols=9 Identities=33% Similarity=0.534 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 041582 70 KKLIEELQA 78 (153)
Q Consensus 70 k~~l~eLE~ 78 (153)
++.++.|+.
T Consensus 34 ~~~~~~l~~ 42 (106)
T PF10805_consen 34 REDIEKLEE 42 (106)
T ss_pred HHHHHHHHH
Confidence 334444433
No 99
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=84.99 E-value=6.3 Score=33.38 Aligned_cols=43 Identities=23% Similarity=0.260 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQL 120 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~ 120 (153)
.+..+||.++..+..+...|. .+...|.+.|-.|=+++..|+.
T Consensus 93 ~Rn~ELE~elr~~~~~~~~L~-------~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 93 QRNAELEEELRKQQQTISSLR-------REVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhh
Confidence 334667666665555555544 4455677889999899888864
No 100
>PRK09039 hypothetical protein; Validated
Probab=84.96 E-value=7.1 Score=34.26 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQL 111 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~L 111 (153)
..+.-|..+++.|+.+...|...+..++.+......+-..|
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555444444444444333333333
No 101
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=84.83 E-value=9.8 Score=30.69 Aligned_cols=53 Identities=17% Similarity=0.194 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDL 125 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~ 125 (153)
...++.+...|+.++..|..++..|+.++..|..+...+.+....|-..|..+
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RA 151 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRA 151 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666666666666665444433
No 102
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=84.71 E-value=3.2 Score=30.72 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISL 97 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L 97 (153)
+.+.+++.+++.++.+|..|..++..|
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444433
No 103
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=84.68 E-value=27 Score=30.59 Aligned_cols=82 Identities=21% Similarity=0.221 Sum_probs=48.3
Q ss_pred chhHHHHHHHHHhHH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 46 IINEKRLKRVISNRE-----SARRSRMRK-KKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 46 ~~e~KR~RR~lkNRe-----SArrSR~RK-k~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
..++|=.+=|+.|-. ++-...--- |..+++|+..+..+..++......+..+...+..|..|...|+.+|....
T Consensus 88 evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rd 167 (302)
T PF09738_consen 88 EVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRD 167 (302)
T ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666532 222222211 33445555555555555555555566666677777778888888887777
Q ss_pred HHHHHhcc
Q 041582 120 LVISDLLA 127 (153)
Q Consensus 120 ~~L~d~~~ 127 (153)
..|.++..
T Consensus 168 eli~khGl 175 (302)
T PF09738_consen 168 ELIEKHGL 175 (302)
T ss_pred HHHHHCCe
Confidence 77777764
No 104
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=84.50 E-value=9.6 Score=32.94 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
+..|..++..+..+...++.++..++.+...+..+-..+.++...+
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l 256 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQEL 256 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443333333333333333
No 105
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=84.26 E-value=16 Score=27.80 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041582 105 VQENSQLKEKVSSLQLVI 122 (153)
Q Consensus 105 ~~EN~~Lr~~l~~Lq~~L 122 (153)
..++.+|+..+..|...+
T Consensus 95 ~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 95 SEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555666655554443
No 106
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=84.20 E-value=11 Score=25.71 Aligned_cols=45 Identities=24% Similarity=0.375 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 76 LQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQL 120 (153)
Q Consensus 76 LE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~ 120 (153)
+..++...+..|-.+..++.....++..|..+-..|+.++..++.
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555566777777777777766666666666666666666553
No 107
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=84.02 E-value=5.4 Score=37.81 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCC
Q 041582 70 KKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLEEVNGNM 139 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~~~~~n~ 139 (153)
.+.+++|..+++.+..+...+...+..+......+..+....+.+...+...+.-....+-.|.+.+.|+
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni 396 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENI 396 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4445555666666666666666666655555555555555555555555544443333444445555554
No 108
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=84.00 E-value=12 Score=26.03 Aligned_cols=58 Identities=17% Similarity=0.256 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 69 KKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 69 Kk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
|-+.+..|-.+-+.|......+...|..|+.+...+..+...|+.++..+...+..+.
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666777766666666666666666666655544443
No 109
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=83.85 E-value=0.45 Score=42.45 Aligned_cols=49 Identities=27% Similarity=0.310 Sum_probs=42.5
Q ss_pred CccchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 43 PASIINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLS 91 (153)
Q Consensus 43 ~~~~~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~ 91 (153)
.....++++.|=..+||.||-++|.|||..+..|+.+...+..+|..|.
T Consensus 278 ~~~~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~ 326 (395)
T KOG1414|consen 278 VDEDPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL 326 (395)
T ss_pred cCCCchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence 3446667775558999999999999999999999999999999998877
No 110
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=83.84 E-value=9.9 Score=26.28 Aligned_cols=42 Identities=17% Similarity=0.314 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 77 QAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 77 E~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
+.....|..|+.....++...-..+..|..||..|+.++..+
T Consensus 25 ~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 25 EIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555555555555555555555443
No 111
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=83.82 E-value=22 Score=32.66 Aligned_cols=70 Identities=16% Similarity=0.279 Sum_probs=54.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 50 KRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 50 KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
++.+-+.++=+.-.++....+.....|+.++..++.++..+..++.........+...+..+...+..|+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 6666666666666666777777888899999999999998888888888877777777777777777664
No 112
>PF15058 Speriolin_N: Speriolin N terminus
Probab=83.45 E-value=3.4 Score=34.35 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
.+.|.++++.|-.||++|++.+..+ .||.+||.-|.+-
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLi--------rEN~eLksaL~ea 44 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLI--------RENHELKSALGEA 44 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHH--------HHHHHHHHHHHHh
Confidence 4678889999999999999998755 5888888775433
No 113
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=82.82 E-value=34 Score=35.53 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=9.2
Q ss_pred CCCC--CCCCC---CCcccccC
Q 041582 7 GRFL--SNSQF---HVPVHIFS 23 (153)
Q Consensus 7 ~~~~--~~~~~---~~~~~~~~ 23 (153)
++|| -+.+| +-|..+|+
T Consensus 380 e~~p~~~~~~f~Gn~LPFIGfT 401 (1317)
T KOG0612|consen 380 ETFPPRIPKAFSGNHLPFIGFT 401 (1317)
T ss_pred hccCCCCCCCCcCCcCCeeeee
Confidence 4666 33333 45667766
No 114
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=82.53 E-value=15 Score=27.95 Aligned_cols=13 Identities=23% Similarity=0.389 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 041582 108 NSQLKEKVSSLQL 120 (153)
Q Consensus 108 N~~Lr~~l~~Lq~ 120 (153)
...|+.++..|+.
T Consensus 70 ~~~L~~el~~l~~ 82 (120)
T PF12325_consen 70 VEELEQELEELQQ 82 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
No 115
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=82.50 E-value=13 Score=35.12 Aligned_cols=62 Identities=24% Similarity=0.357 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHH
Q 041582 64 RSRMRKKKLIEELQ-------AQVNHVQTVNHQLSEKLISLLE-----------------------------SNHQIVQE 107 (153)
Q Consensus 64 rSR~RKk~~l~eLE-------~kv~~Le~eN~~L~~~i~~L~~-----------------------------~~~~L~~E 107 (153)
.+|.|-|+.+.+|- .+|..|+++|..|...+..|+. ....++.+
T Consensus 35 ~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~e 114 (546)
T KOG0977|consen 35 DSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIE 114 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555554 4788889999999888877764 23345555
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 041582 108 NSQLKEKVSSLQLVISDL 125 (153)
Q Consensus 108 N~~Lr~~l~~Lq~~L~d~ 125 (153)
-..|+.++..|+..+...
T Consensus 115 i~kl~~e~~elr~~~~~~ 132 (546)
T KOG0977|consen 115 ITKLREELKELRKKLEKA 132 (546)
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 566666666665555554
No 116
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=82.18 E-value=8.2 Score=28.50 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 90 LSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 90 L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
+..++..++.++..+..+|..|+.++..|
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344444444444444444444444
No 117
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=82.14 E-value=13 Score=30.11 Aligned_cols=54 Identities=20% Similarity=0.239 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
.++++=..+...|...|.-|+.++......+..|..++..|......++..|..
T Consensus 67 ~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ 120 (182)
T PF15035_consen 67 IRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQ 120 (182)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666676677777666666666666666666666666555443
No 118
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=81.91 E-value=17 Score=33.75 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
++.|+.++..|+.+|..|+..+..|...+..|..+-..+..+|..++-+|.
T Consensus 299 ~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~ 349 (502)
T KOG0982|consen 299 KENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLI 349 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 455667888999999999999999988888888888777777766654443
No 119
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.91 E-value=9.4 Score=24.36 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 94 LISLLESNHQIVQENSQLKEKVSSLQLV 121 (153)
Q Consensus 94 i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~ 121 (153)
...|...+..|..+|..|..+...|++.
T Consensus 7 y~~LK~~yd~Lk~~~~~L~~E~~~L~ae 34 (45)
T PF02183_consen 7 YDALKASYDSLKAEYDSLKKENEKLRAE 34 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 120
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=81.75 E-value=8.3 Score=30.28 Aligned_cols=38 Identities=18% Similarity=0.304 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 89 QLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 89 ~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
+|..+...|..+.+.|..||..++.++..+......+.
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666677889999999999999987666554
No 121
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=81.25 E-value=12 Score=32.53 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041582 103 QIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 103 ~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
.+..+...|..++...+..|..
T Consensus 110 ~~~~e~~sl~~q~~~~~~~L~~ 131 (314)
T PF04111_consen 110 EFQEERDSLKNQYEYASNQLDR 131 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 122
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=81.13 E-value=31 Score=28.84 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 61 SARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESN 101 (153)
Q Consensus 61 SArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~ 101 (153)
+++.--.+-+..+..|..++..|+..|..|...+..++..+
T Consensus 213 ~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~ 253 (312)
T PF00038_consen 213 SAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRL 253 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHH
Confidence 34444445555667777777777777777777776665433
No 123
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=80.46 E-value=7 Score=26.04 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLI 95 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~ 95 (153)
+.+|+.+++.++.+|..|..++.
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433333
No 124
>PRK00736 hypothetical protein; Provisional
Probab=80.19 E-value=16 Score=24.98 Aligned_cols=52 Identities=10% Similarity=0.134 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 75 ELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 75 eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
.++.++..|+....-+...|..|......-..+...|..++..|..+|.++.
T Consensus 2 ~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 2 DAEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3678899999999988888888877777777777888999999988888765
No 125
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=80.00 E-value=30 Score=33.05 Aligned_cols=55 Identities=20% Similarity=0.323 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 041582 67 MRKKKLIEELQAQVNHVQTVNHQLSEKLISLL---ESNHQIVQENSQLKEKVSSLQLV 121 (153)
Q Consensus 67 ~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~---~~~~~L~~EN~~Lr~~l~~Lq~~ 121 (153)
..+..++.+||..+..+..+......-++.++ .......++|..|+.+|..|+..
T Consensus 118 ~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~ 175 (617)
T PF15070_consen 118 QEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDA 175 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHH
Confidence 35677777777777666655332222222221 12223445555555555555543
No 126
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=79.90 E-value=23 Score=27.47 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSEKL 94 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i 94 (153)
..|..++..|+.+...+..++
T Consensus 38 ~sL~~K~~~lE~eld~~~~~l 58 (143)
T PF12718_consen 38 TSLQKKNQQLEEELDKLEEQL 58 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 127
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=79.87 E-value=10 Score=32.15 Aligned_cols=32 Identities=28% Similarity=0.345 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 70 KKLIEELQAQVNHVQTVNHQLSEKLISLLESN 101 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~ 101 (153)
++.+..|..+|+.|+.+|-+|-.++.-|+.-.
T Consensus 106 ~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~ 137 (248)
T PF08172_consen 106 QQTISSLRREVESLRADNVKLYEKIRYLQSYN 137 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 34466777777777777777777776665433
No 128
>PHA02562 46 endonuclease subunit; Provisional
Probab=79.75 E-value=41 Score=30.27 Aligned_cols=9 Identities=0% Similarity=-0.071 Sum_probs=4.4
Q ss_pred CCCCCCCCC
Q 041582 24 PNTSVSPRS 32 (153)
Q Consensus 24 ~~~s~~~~~ 32 (153)
..|..|...
T Consensus 285 ~~Cp~C~~~ 293 (562)
T PHA02562 285 GVCPTCTQQ 293 (562)
T ss_pred CCCCCCCCc
Confidence 455555443
No 129
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=79.73 E-value=10 Score=32.05 Aligned_cols=49 Identities=22% Similarity=0.249 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQL 120 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~ 120 (153)
-+.+|..+++.|+.|+..|+.+++.+..+...+....+.|-.+|..+..
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578899999999999999999999999999999888888888877543
No 130
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=79.58 E-value=13 Score=27.16 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 90 LSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 90 L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
...++..|+.+...+..||..|+.++..-
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e 75 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTE 75 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555554443
No 131
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=79.26 E-value=39 Score=31.58 Aligned_cols=74 Identities=19% Similarity=0.200 Sum_probs=46.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 53 KRVISNRESARRSRMRKKKLI----EELQAQVNHVQTVNHQLSEKLISLLE----SNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 53 RR~lkNReSArrSR~RKk~~l----~eLE~kv~~Le~eN~~L~~~i~~L~~----~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
+-...|-++++++=.+|...+ +.+..++..++.+|..|.+....... ....+...+....+++..|+.+|.|
T Consensus 367 ~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 367 KQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRD 446 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556667777766665543 45566666666666666655433333 3334445566667778888888888
Q ss_pred hc
Q 041582 125 LL 126 (153)
Q Consensus 125 ~~ 126 (153)
+.
T Consensus 447 lm 448 (493)
T KOG0804|consen 447 LM 448 (493)
T ss_pred Hh
Confidence 77
No 132
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=79.15 E-value=18 Score=29.73 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041582 100 SNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 100 ~~~~L~~EN~~Lr~~l~~Lq 119 (153)
+...+...|-.+...+..|.
T Consensus 183 ~W~~~v~kn~eie~a~~~Le 202 (221)
T PF05700_consen 183 RWKELVSKNLEIEVACEELE 202 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444433333333
No 133
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=79.14 E-value=25 Score=26.60 Aligned_cols=76 Identities=14% Similarity=0.139 Sum_probs=45.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 51 RLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 51 R~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
+..-+..-.+...-|+..=...-++|+..+..|+.++......+..|+.++..+...-..-+..-..|+.++....
T Consensus 17 ~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~ 92 (107)
T PF09304_consen 17 RLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQ 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666666666677777777777777777777777777666655544332222224444444433
No 134
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=78.98 E-value=9.4 Score=30.37 Aligned_cols=47 Identities=28% Similarity=0.413 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 75 ELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLV 121 (153)
Q Consensus 75 eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~ 121 (153)
+|..+|..|+.+|..|..++..+..+...|......|+.+...+...
T Consensus 93 ~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er 139 (158)
T PF09744_consen 93 DLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHER 139 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHH
Confidence 34445555555555555555444444445555555555555555433
No 135
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=78.62 E-value=29 Score=28.01 Aligned_cols=8 Identities=38% Similarity=0.513 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 041582 106 QENSQLKE 113 (153)
Q Consensus 106 ~EN~~Lr~ 113 (153)
.++..|+.
T Consensus 117 ~~~~~l~~ 124 (188)
T PF03962_consen 117 KELKELKK 124 (188)
T ss_pred HHHHHHHH
Confidence 33333333
No 136
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=78.60 E-value=2.8 Score=26.84 Aligned_cols=36 Identities=28% Similarity=0.325 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 81 NHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVS 116 (153)
Q Consensus 81 ~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~ 116 (153)
..+-..|..|..++..++.....|..||-.||+++.
T Consensus 10 ~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 10 RELAKRNSALSIKIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp --------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 344456677777777777777777788877777653
No 137
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=77.94 E-value=42 Score=28.52 Aligned_cols=77 Identities=16% Similarity=0.295 Sum_probs=47.2
Q ss_pred HHHHHHHHhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 50 KRLKRVISNRESARRSRMRK----------KKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 50 KR~RR~lkNReSArrSR~RK----------k~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
+.+.+.+.....+-+.|..+ ...+..|..++..++..-..|..++..+......+..+-..|+.++..+.
T Consensus 58 e~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e 137 (239)
T COG1579 58 ENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLE 137 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455444444443 34456666777777777777777777777777777777777776666666
Q ss_pred HHHHHhc
Q 041582 120 LVISDLL 126 (153)
Q Consensus 120 ~~L~d~~ 126 (153)
..+.+..
T Consensus 138 ~~~~e~~ 144 (239)
T COG1579 138 KNLAEAE 144 (239)
T ss_pred HHHHHHH
Confidence 5555554
No 138
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=77.75 E-value=19 Score=24.32 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKV 115 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l 115 (153)
.++.|...|..|.....+|...+..++........|-.+--.+|
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666555554444433333333
No 139
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=77.73 E-value=14 Score=34.34 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 69 KKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 69 Kk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
-+..+.+-+.+.++|+.+...|+.+++.+..+...+..+-..|..++..|+.++.-
T Consensus 67 nqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 67 RQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 34456788889999999999999888888888888888888999999999888743
No 140
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=77.64 E-value=12 Score=32.48 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041582 78 AQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLA 127 (153)
Q Consensus 78 ~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~ 127 (153)
.++...+.+...+..++..|+.++.....+...|..++...+..|..+..
T Consensus 235 ~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~ 284 (344)
T PF12777_consen 235 EQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEK 284 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHH
Confidence 33333333444444444444444444444445555444444444444433
No 141
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=77.22 E-value=24 Score=25.38 Aligned_cols=65 Identities=12% Similarity=0.142 Sum_probs=56.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 53 KRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSS 117 (153)
Q Consensus 53 RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~ 117 (153)
-++...+......=..|...+..||.++..|..+...-..+.-.++.....|..|+..|+..+..
T Consensus 6 ~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~K 70 (96)
T PF08647_consen 6 VSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSK 70 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 35566677777777889999999999999999999999999999999999999999999888743
No 142
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.03 E-value=23 Score=25.05 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSS 117 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~ 117 (153)
+++.+||.++..-+.-...|...+...+.....+...-+.|-.++..
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~ 54 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKD 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666776666666666666555554444443333333333333333
No 143
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=76.81 E-value=27 Score=26.88 Aligned_cols=46 Identities=17% Similarity=0.199 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVS 116 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~ 116 (153)
..++.|+.++...+.........+..|+..+..+..+...+..++.
T Consensus 41 ~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~ 86 (160)
T PF13094_consen 41 HQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAH 86 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4456777777777777777777777777777777777666666653
No 144
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=76.81 E-value=14 Score=24.88 Aligned_cols=14 Identities=21% Similarity=0.577 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTV 86 (153)
Q Consensus 73 l~eLE~kv~~Le~e 86 (153)
+++||.++..+...
T Consensus 2 i~elEn~~~~~~~~ 15 (55)
T PF05377_consen 2 IDELENELPRIESS 15 (55)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455444444433
No 145
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=76.53 E-value=20 Score=24.13 Aligned_cols=47 Identities=13% Similarity=0.202 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 78 AQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 78 ~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
.++..|..+.+.|..++..|......+..+-...+.+......+|-.
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777777777777777777777777777777777776666655543
No 146
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=76.50 E-value=15 Score=24.98 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 86 VNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 86 eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
....+..++..++.+...+..||..|+.++..|.
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344555555555555566666666666666553
No 147
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=76.45 E-value=35 Score=26.75 Aligned_cols=45 Identities=22% Similarity=0.232 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccc
Q 041582 90 LSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLEE 134 (153)
Q Consensus 90 L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~~ 134 (153)
|..++..+......|..+-..|+.+-..|-..+..+...++.|+.
T Consensus 57 L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~ 101 (140)
T PF10473_consen 57 LEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELES 101 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333334444444554455555543
No 148
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=76.37 E-value=25 Score=25.12 Aligned_cols=51 Identities=22% Similarity=0.371 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 76 LQAQVNHVQTVNHQLSEKLISLLE---SNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 76 LE~kv~~Le~eN~~L~~~i~~L~~---~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
|..+++.|+.+-..+..+++.+.. ....|..+-..|+.++..+...+..+.
T Consensus 41 l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e 94 (108)
T PF02403_consen 41 LQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELE 94 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555543 244555666666666666655544443
No 149
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=76.29 E-value=13 Score=35.70 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 041582 78 AQVNHVQTVNHQLSE 92 (153)
Q Consensus 78 ~kv~~Le~eN~~L~~ 92 (153)
.+|+.|+.+|..|..
T Consensus 429 ~~ve~l~~e~~~L~~ 443 (652)
T COG2433 429 ETVERLEEENSELKR 443 (652)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 150
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=76.13 E-value=5.3 Score=28.98 Aligned_cols=30 Identities=30% Similarity=0.378 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 69 KKKLIEELQAQVNHVQTVNHQLSEKLISLL 98 (153)
Q Consensus 69 Kk~~l~eLE~kv~~Le~eN~~L~~~i~~L~ 98 (153)
|+.+++.|...++.++.+|..|..+|..++
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566778888888888888888888876553
No 151
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=76.08 E-value=14 Score=32.31 Aligned_cols=82 Identities=22% Similarity=0.266 Sum_probs=44.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH-----------HHHHHHHHHHHHHHHH
Q 041582 54 RVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISL-------LE-----------SNHQIVQENSQLKEKV 115 (153)
Q Consensus 54 R~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L-------~~-----------~~~~L~~EN~~Lr~~l 115 (153)
+-+.-|+--.....--.++-.+|+.++.+++..|..|...+..| .+ +...|+.++..+++.-
T Consensus 28 ~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aik 107 (333)
T KOG1853|consen 28 HFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIK 107 (333)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555555554444444333 32 2235677777777777
Q ss_pred HHHHHHHHHhccCccccccc
Q 041582 116 SSLQLVISDLLAPLRGLEEV 135 (153)
Q Consensus 116 ~~Lq~~L~d~~~~~~~~~~~ 135 (153)
..|+..+..+.+.=-+||-.
T Consensus 108 eql~kyiReLEQaNDdLEra 127 (333)
T KOG1853|consen 108 EQLRKYIRELEQANDDLERA 127 (333)
T ss_pred HHHHHHHHHHHHhccHHHHh
Confidence 77776666666544444433
No 152
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=75.97 E-value=10 Score=24.33 Aligned_cols=30 Identities=20% Similarity=0.374 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 90 LSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 90 L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
-...+..|+.....|..+|..|..++..|.
T Consensus 23 kk~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 23 KKQREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455666667777777777777777765
No 153
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=75.91 E-value=8.9 Score=25.50 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 89 QLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 89 ~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
.+..++..++.+...+..+|..|+.++..|
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555556666666666666666
No 154
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=75.71 E-value=12 Score=36.09 Aligned_cols=53 Identities=15% Similarity=0.232 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
.+|-.+|.+|..|+.-|+.++...+.....|+..+++|.++|..+.+.+.++.
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar 377 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDAR 377 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999988888888888888888888888887777764
No 155
>PHA02562 46 endonuclease subunit; Provisional
Probab=75.27 E-value=63 Score=29.11 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 041582 96 SLLESNHQIVQENSQLKEKVSSLQLVISDLLAP 128 (153)
Q Consensus 96 ~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~ 128 (153)
.++.++..+..+...|..++..|+..|.++..+
T Consensus 217 ~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~ 249 (562)
T PHA02562 217 RKQNKYDELVEEAKTIKAEIEELTDELLNLVMD 249 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344455555566666666666666666665543
No 156
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=75.19 E-value=28 Score=27.52 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 75 ELQAQVNHVQTVNHQLSEKLISLL-ESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 75 eLE~kv~~Le~eN~~L~~~i~~L~-~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
+++...-.++.....|+.++..++ .+...+..++..|+.++..|...|.+
T Consensus 48 d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ 98 (177)
T PF07798_consen 48 DLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELRE 98 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555443 34445555666666666555555444
No 157
>PF14645 Chibby: Chibby family
Probab=75.17 E-value=17 Score=27.41 Aligned_cols=43 Identities=19% Similarity=0.242 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKV 115 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l 115 (153)
...|..+...|+.||+-|+-+++.|..-.....+|-..+..++
T Consensus 73 ~~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~l 115 (116)
T PF14645_consen 73 NQRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKEL 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445666777778888888888777766666666655554443
No 158
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.01 E-value=28 Score=30.10 Aligned_cols=10 Identities=40% Similarity=0.660 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q 041582 106 QENSQLKEKV 115 (153)
Q Consensus 106 ~EN~~Lr~~l 115 (153)
.+-..|+..+
T Consensus 87 ~eI~~~~~~I 96 (265)
T COG3883 87 KEIAELKENI 96 (265)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 159
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=74.96 E-value=10 Score=36.94 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 75 ELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 75 eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
.||.+...|+.+...++.+-..|...|..|+.||-.|..++..|+
T Consensus 73 ~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk 117 (717)
T PF09730_consen 73 DLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLK 117 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444455566666666666665553
No 160
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=74.67 E-value=6.5 Score=30.23 Aligned_cols=28 Identities=36% Similarity=0.456 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 69 KKKLIEELQAQVNHVQTVNHQLSEKLIS 96 (153)
Q Consensus 69 Kk~~l~eLE~kv~~Le~eN~~L~~~i~~ 96 (153)
|..-+++|..++..|+-||..|+.++..
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456899999999999999999999743
No 161
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=74.25 E-value=23 Score=29.78 Aligned_cols=51 Identities=24% Similarity=0.263 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVI 122 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L 122 (153)
..+.|+.+++....+-..+..+...|+.+...+..|-..|.++-..||.++
T Consensus 159 ~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 159 DLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444445555555555555555555443
No 162
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=74.23 E-value=37 Score=26.22 Aligned_cols=58 Identities=17% Similarity=0.272 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 66 RMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 66 R~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
+.=-...+.+|+.++..|..+.-.=...++.+=.+++.|..+++.|.+.+..|...|.
T Consensus 9 kE~He~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE~RLR 66 (120)
T PF10482_consen 9 KEIHEKEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLENRLR 66 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334455677777777777776655666666666677777777777777766655543
No 163
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=74.04 E-value=56 Score=30.08 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 75 ELQAQVNHVQTVNHQLSEKLISLLESNHQIVQEN 108 (153)
Q Consensus 75 eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN 108 (153)
.++.++.....++..+.+.|..+......|..+-
T Consensus 77 ~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 77 SLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444433
No 164
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=73.82 E-value=18 Score=30.45 Aligned_cols=41 Identities=12% Similarity=0.197 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 70 KKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQ 110 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~ 110 (153)
...+++|..+|..|+-+++.+.-++..+.++...+-.+-..
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666665555555555433
No 165
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=73.78 E-value=23 Score=26.20 Aligned_cols=45 Identities=31% Similarity=0.430 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDL 125 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~ 125 (153)
.+|..++...+.|-.-|+..+ ..++.+|..|..+|..++....+.
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl-------~ele~eN~~l~~EL~kyk~~~g~~ 48 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKL-------SELEDENKQLTEELNKYKSKYGDL 48 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666666666655555555 456777888888887777654433
No 166
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=73.55 E-value=26 Score=32.25 Aligned_cols=65 Identities=18% Similarity=0.157 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 59 RESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 59 ReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
-++|.-.|+|..+--...|..++.+..|...|+.++.........|..|+..|++-+..|.+-+.
T Consensus 226 eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQ 290 (561)
T KOG1103|consen 226 EEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQ 290 (561)
T ss_pred hHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 45667777787777778888889999999999999999988888999999999988887765443
No 167
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=73.44 E-value=30 Score=30.61 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 76 LQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 76 LE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
|..-+.+.+.+|..|..++..|+..+..+..++..||+++...
T Consensus 70 La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 70 LAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 3333444444444444444444444444444444444444333
No 168
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=73.41 E-value=59 Score=33.27 Aligned_cols=55 Identities=22% Similarity=0.361 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 70 KKLIEELQAQVNHVQTVN-HQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN-~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
+..++.|+.++..++.+- ..+..++..++.++..|..|+..|..++..|+.-+.+
T Consensus 371 k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~ 426 (1074)
T KOG0250|consen 371 KKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNE 426 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555554444 4444444444444444444444444444444433333
No 169
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.38 E-value=39 Score=30.51 Aligned_cols=58 Identities=17% Similarity=0.288 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 69 KKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 69 Kk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
.++.++.+....+.|..--+.|..-.+.|......|+.+-..|.+.+.-|..-..+++
T Consensus 223 ~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal 280 (365)
T KOG2391|consen 223 REEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREAL 280 (365)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3444455555555444444444444444444455555555555555555544444443
No 170
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=73.37 E-value=29 Score=29.19 Aligned_cols=43 Identities=16% Similarity=0.255 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 79 QVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLV 121 (153)
Q Consensus 79 kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~ 121 (153)
.+..|+.....+..+..........+..|-..|+.++..++..
T Consensus 61 DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 61 DINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444555555555555555444
No 171
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=73.14 E-value=19 Score=29.92 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 83 VQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 83 Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
--.||..|...|..+.+++..|..||..|++-+..+
T Consensus 123 aL~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~ 158 (200)
T PF07412_consen 123 ALEENEKLHKEIEQKDEEIAKLKEENEELKELAEHV 158 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345888899999999999999999998887755433
No 172
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=72.85 E-value=35 Score=25.06 Aligned_cols=42 Identities=14% Similarity=0.268 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 70 KKLIEELQAQVNHV--QTVNHQLSEKLISLLESNHQIVQENSQL 111 (153)
Q Consensus 70 k~~l~eLE~kv~~L--e~eN~~L~~~i~~L~~~~~~L~~EN~~L 111 (153)
..++..+|.+++.| ..+...|...++.+.-....+..+-+.+
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34555555555555 4555555555555444444444433333
No 173
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=72.52 E-value=21 Score=26.55 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 79 QVNHVQTVNHQLSEKLISLLESNHQIVQENSQLK 112 (153)
Q Consensus 79 kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr 112 (153)
.+..|+.++..+..++..+...+..+..+.+.|+
T Consensus 81 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 81 QLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 174
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=72.21 E-value=13 Score=26.18 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 94 LISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 94 i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
+..++.+.+.++-|+-.||.++...+..|...+
T Consensus 10 L~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aL 42 (70)
T PF08606_consen 10 LSTLQNEWDALMLENFTLRKQLDQTRQELSHAL 42 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777776666665544
No 175
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=72.08 E-value=27 Score=23.47 Aligned_cols=36 Identities=11% Similarity=0.315 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 80 VNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVI 122 (153)
Q Consensus 80 v~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L 122 (153)
+..|+.+...+...+..+ ..||..|+..+..+..-+
T Consensus 2 i~elEn~~~~~~~~i~tv-------k~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 2 IDELENELPRIESSINTV-------KKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433 344444444444444333
No 176
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=72.07 E-value=53 Score=33.52 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=11.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH
Q 041582 53 KRVISNRESARRSRMRKKKLIE 74 (153)
Q Consensus 53 RR~lkNReSArrSR~RKk~~l~ 74 (153)
|++..-|..|+..-.-|-+|..
T Consensus 283 rel~raR~e~keaqe~ke~~k~ 304 (1243)
T KOG0971|consen 283 RELKRARKEAKEAQEAKERYKE 304 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666655555544443
No 177
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=71.98 E-value=38 Score=29.97 Aligned_cols=83 Identities=18% Similarity=0.220 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 60 ESARRSRMRKKKLIEELQAQVNHVQTVNHQLS---------------------EKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 60 eSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~---------------------~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
+..+.-|..=|.-++.|..+...|+.....+. .-+....+++..|..|...|++++.++
T Consensus 19 e~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~ 98 (319)
T PF09789_consen 19 EKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEA 98 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555666655555555444443 333444444555555555555555444
Q ss_pred H---HHHHHhc--cCcccccccCCCCCCc
Q 041582 119 Q---LVISDLL--APLRGLEEVNGNMNRP 142 (153)
Q Consensus 119 q---~~L~d~~--~~~~~~~~~~~n~~~~ 142 (153)
+ ..|..-+ .+..+...+.+++++-
T Consensus 99 qGD~KlLR~~la~~r~~~~~~~~~~~~~e 127 (319)
T PF09789_consen 99 QGDIKLLREKLARQRVGDEGIGARHFPHE 127 (319)
T ss_pred hchHHHHHHHHHhhhhhhccccccccchH
Confidence 3 1122222 2334445555665533
No 178
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=71.84 E-value=63 Score=27.58 Aligned_cols=69 Identities=23% Similarity=0.243 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHH
Q 041582 60 ESARRSRMRKKKLI----EELQAQVNHVQTVNHQLSEKLISLLESNHQ---------------IVQENSQLKEKVSSLQL 120 (153)
Q Consensus 60 eSArrSR~RKk~~l----~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~---------------L~~EN~~Lr~~l~~Lq~ 120 (153)
+|+-..-+||.-.. ..++.++..|+.++..|..+|..+..++.. ...|+..|+.--..|.+
T Consensus 170 eSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEkk~~eei~fLk~tN~qLKa 249 (259)
T KOG4001|consen 170 ESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEKKMKEEIEFLKETNRQLKA 249 (259)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677776554 346667777777777777777766654432 33344444444455566
Q ss_pred HHHHhccC
Q 041582 121 VISDLLAP 128 (153)
Q Consensus 121 ~L~d~~~~ 128 (153)
+|..++.|
T Consensus 250 QLegI~ap 257 (259)
T KOG4001|consen 250 QLEGILAP 257 (259)
T ss_pred HHhhcccC
Confidence 66666555
No 179
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=71.83 E-value=23 Score=33.88 Aligned_cols=69 Identities=29% Similarity=0.300 Sum_probs=40.3
Q ss_pred ccCCccchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 40 RETPASIINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 40 ~~~~~~~~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
+.++....|.|-.||-. |+=|-..-.++-.+.+ +.....|...+..|..+++.|..||..||.+|..|.
T Consensus 268 ~stp~~~~d~kv~krqQ---------RmIKNResA~~SRkKK--KEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~ 336 (655)
T KOG4343|consen 268 SSTPNVGSDIKVLKRQQ---------RMIKNRESACQSRKKK--KEYMLGLEARLQALLSENEQLKKENATLKRQLDELV 336 (655)
T ss_pred CCCCCCccCHHHHHHHH---------HHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 34667889999988764 2323332233332221 223345666666666667777777777777776664
No 180
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=71.82 E-value=13 Score=28.19 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 75 ELQAQVNHVQTVNHQLSEKLISLL 98 (153)
Q Consensus 75 eLE~kv~~Le~eN~~L~~~i~~L~ 98 (153)
.|..+...|+.||+-|+-+++.|.
T Consensus 76 rlkkk~~~LeEENNlLklKievLL 99 (108)
T cd07429 76 RLKKKNQQLEEENNLLKLKIEVLL 99 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666555543
No 181
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=71.55 E-value=34 Score=24.45 Aligned_cols=48 Identities=21% Similarity=0.291 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041582 80 VNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLA 127 (153)
Q Consensus 80 v~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~ 127 (153)
-+.|..+...|...+..|..+...+..||..|+.+=..|+.-+..+..
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666677777777777777777777777777777777666654
No 182
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=71.30 E-value=40 Score=34.41 Aligned_cols=69 Identities=16% Similarity=0.220 Sum_probs=45.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 55 VISNRESARRSRMRKKKLIEELQAQV-NHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 55 ~lkNReSArrSR~RKk~~l~eLE~kv-~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
...+=...+....+....+.+++.+. ..+..+..++..++..|..+...++..+..|++++..+..-+.
T Consensus 363 ~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~ 432 (1074)
T KOG0250|consen 363 IENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAK 432 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444556666777777788887777 6666666666666666666666666666666666665544433
No 183
>PHA03155 hypothetical protein; Provisional
Probab=71.10 E-value=6.2 Score=30.23 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLIS 96 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~ 96 (153)
.-+++|+.++..|+-||..|+.++..
T Consensus 8 ~tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 8 ADVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34799999999999999999999843
No 184
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=70.68 E-value=41 Score=29.94 Aligned_cols=38 Identities=11% Similarity=0.047 Sum_probs=24.6
Q ss_pred chhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 46 IINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHV 83 (153)
Q Consensus 46 ~~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~L 83 (153)
....++.|+++++|+..-..=+||..++.-=+..+.+|
T Consensus 118 ~~~~~e~r~~lk~RI~rSEAFKRKllE~kYD~~mL~qL 155 (323)
T PF08537_consen 118 RKSGREERRLLKDRILRSEAFKRKLLEKKYDKRMLEQL 155 (323)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34455667899999998888878766553333333333
No 185
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=70.51 E-value=53 Score=29.08 Aligned_cols=61 Identities=23% Similarity=0.213 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 59 RESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 59 ReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
-++++|-....+-++.+++.....-+........+-..+++....|..||--|+++|....
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~ 241 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAH 241 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777888888877777777777777778888899999999999999987764
No 186
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=70.41 E-value=38 Score=29.63 Aligned_cols=52 Identities=12% Similarity=0.210 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDL 125 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~ 125 (153)
+-|..++..++.....|..++......+..+......|+.++..|+..|...
T Consensus 115 d~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~r 166 (302)
T PF09738_consen 115 DLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQR 166 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555554444444455555566666666666666544
No 187
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=69.96 E-value=27 Score=24.91 Aligned_cols=29 Identities=28% Similarity=0.489 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 88 HQLSEKLISLLESNHQIVQENSQLKEKVS 116 (153)
Q Consensus 88 ~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~ 116 (153)
..|..++..|..+...|..+|..|+.++.
T Consensus 71 ~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 71 QLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566667777777777777777776653
No 188
>PHA03162 hypothetical protein; Provisional
Probab=69.91 E-value=3.6 Score=32.29 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 68 RKKKLIEELQAQVNHVQTVNHQLSEKL 94 (153)
Q Consensus 68 RKk~~l~eLE~kv~~Le~eN~~L~~~i 94 (153)
++..-|++|..++..|+-||..|+.++
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678999999999999999999998
No 189
>PF14282 FlxA: FlxA-like protein
Probab=69.81 E-value=41 Score=24.66 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 98 LESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 98 ~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
..+...|..+-..|..+|..|+.....
T Consensus 50 ~~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 50 QQQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555444333
No 190
>PRK02224 chromosome segregation protein; Provisional
Probab=69.13 E-value=89 Score=30.03 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHhccCccc
Q 041582 110 QLKEKVSSLQLVISDLLAPLRG 131 (153)
Q Consensus 110 ~Lr~~l~~Lq~~L~d~~~~~~~ 131 (153)
.++..+..+...|.+..+|+|+
T Consensus 437 ~~~~~l~~~~~~l~~~~Cp~C~ 458 (880)
T PRK02224 437 TARERVEEAEALLEAGKCPECG 458 (880)
T ss_pred HHHHHHHHHHHHHhcccCCCCC
Confidence 3333344444445555577766
No 191
>PHA03161 hypothetical protein; Provisional
Probab=69.08 E-value=58 Score=26.06 Aligned_cols=75 Identities=15% Similarity=0.134 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccc
Q 041582 59 RESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLEEV 135 (153)
Q Consensus 59 ReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~~~ 135 (153)
+.+-++.+..|+ ..+++..|..+........++++.|..-...-...-..|..++..|..-|..-+-++...+++
T Consensus 44 ~~~lr~~~~~~~--~~~i~~~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~E~L~drv~eLkeel~~ELe~l~~~q~~ 118 (150)
T PHA03161 44 KKSLIKHENLKK--QKSIEGMLQAVDLSIQEKKKELSLLKAFDRHKLSAAEDLQDKILELKEDIHFEIEALNHGQPS 118 (150)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 444444444443 377888888888888888888888877666666667778888888888888777776655433
No 192
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=68.86 E-value=58 Score=29.54 Aligned_cols=66 Identities=18% Similarity=0.161 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCC
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLEEVNGN 138 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~~~~~n 138 (153)
..+++++.++..-..+|..+..++..+...+..|...-.+|++.|..=-.+|..+ .+|.|++++-|
T Consensus 154 D~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRdeliee~--Gl~~I~~~t~~ 219 (405)
T KOG2010|consen 154 DVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDELIEEH--GLVIIPDGTPN 219 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CeEeccCCCCC
Confidence 4456666677777777777777777777777777777777777776555555553 45566666655
No 193
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=68.50 E-value=12 Score=33.94 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 79 QVNHVQTVNHQLSEKLISLLESNHQI 104 (153)
Q Consensus 79 kv~~Le~eN~~L~~~i~~L~~~~~~L 104 (153)
+...|+.||..|+++++.|..+...|
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERL 58 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666
No 194
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=68.43 E-value=49 Score=26.78 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 78 AQVNHVQTVNHQLSEKLISLLESNHQ 103 (153)
Q Consensus 78 ~kv~~Le~eN~~L~~~i~~L~~~~~~ 103 (153)
.+++.....|..|...+..|......
T Consensus 88 eQLEq~~~~N~~L~~dl~klt~~~~~ 113 (182)
T PF15035_consen 88 EQLEQARKANEALQEDLQKLTQDWER 113 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555554444444443
No 195
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=68.29 E-value=1.2e+02 Score=29.34 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 100 SNHQIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 100 ~~~~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
....+..+...+..++..+...+.
T Consensus 916 ~l~~l~~~~~~~~~~~~~l~~~l~ 939 (1179)
T TIGR02168 916 ELEELREKLAQLELRLEGLEVRID 939 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444433333
No 196
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=68.23 E-value=24 Score=31.72 Aligned_cols=43 Identities=21% Similarity=0.318 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 041582 77 QAQVNHVQTVNHQLSEKLISLLES----NHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 77 E~kv~~Le~eN~~L~~~i~~L~~~----~~~L~~EN~~Lr~~l~~Lq 119 (153)
..+++.|+.+-+.+.+++..+... ...|..+-+.|++++..|.
T Consensus 43 ~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 89 (418)
T TIGR00414 43 LSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELS 89 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555544432211 2344444444444444443
No 197
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=68.13 E-value=60 Score=26.16 Aligned_cols=67 Identities=18% Similarity=0.319 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCcccccccC
Q 041582 70 KKLIEELQAQVNHVQTVNHQLSEKLISLLESNH-QIVQENSQLKEKVSSLQLVISDLLAPLRGLEEVN 136 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~-~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~~~~ 136 (153)
+..++.|+..++.|......+...+..+..++- ....+-..|.+++..|...+.-+.-.+..|-+.+
T Consensus 78 ~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d~~~l~g~~ 145 (157)
T COG3352 78 KEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKDLRELYGVP 145 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCC
Confidence 356778888888888888888888777765543 3334567788888888877777776666666655
No 198
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=67.95 E-value=50 Score=24.91 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLE 99 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~ 99 (153)
.++++..++..+-.+...|..+...+..
T Consensus 56 ~l~~~r~~l~~~~~~~~~L~~~~~~k~~ 83 (150)
T PF07200_consen 56 ELEELRSQLQELYEELKELESEYQEKEQ 83 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 199
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=67.88 E-value=22 Score=30.49 Aligned_cols=44 Identities=25% Similarity=0.338 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 70 KKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSS 117 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~ 117 (153)
..+..++..+.+.|+.++.++.. +..+...|+.||..|+..+..
T Consensus 65 ~~~~~~~~~en~~Lk~~l~~~~~----~~~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 65 LKSLKDLALENEELKKELAELEQ----LLEEVESLEEENKRLKELLDF 108 (284)
T ss_pred HHHhHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhCC
Confidence 33444444444444444433332 334566888888888887643
No 200
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=67.42 E-value=84 Score=27.31 Aligned_cols=56 Identities=14% Similarity=0.324 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582 70 KKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDL 125 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~ 125 (153)
+..++.++.++...+.+...+..++.....+...|..+-..|...+..+..-+...
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555666666666666666666666666666666666666666665554443
No 201
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=67.25 E-value=60 Score=25.60 Aligned_cols=37 Identities=27% Similarity=0.283 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 84 QTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQL 120 (153)
Q Consensus 84 e~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~ 120 (153)
..++..+..+++.+..+......+...|+.|.+.|+.
T Consensus 153 ~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 153 KEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566677777777777777777777777777653
No 202
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=67.19 E-value=25 Score=24.76 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 83 VQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 83 Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
...+...+..++..++.+...|..||..|+.+...|.
T Consensus 33 ~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 33 SRHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566777777888888888888888888887774
No 203
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=66.88 E-value=1e+02 Score=28.11 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041582 81 NHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLA 127 (153)
Q Consensus 81 ~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~ 127 (153)
..+..-...+..++..+......+..+-..|++++..|+..|..+..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 127 KEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44555555566677777777778888888888888888888776654
No 204
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=66.86 E-value=59 Score=25.32 Aligned_cols=60 Identities=13% Similarity=0.211 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 64 RSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 64 rSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
.-+...++.++.++..+..+..+-..|...+...+.....+..+-..+......+...+.
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQ 182 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555544444445555555555555444444444433
No 205
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=66.69 E-value=26 Score=31.09 Aligned_cols=56 Identities=11% Similarity=0.203 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccc
Q 041582 80 VNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLEEV 135 (153)
Q Consensus 80 v~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~~~ 135 (153)
|..++.....|...+..+......+..+...|...+..|......-=..|-||.+|
T Consensus 146 i~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnNiRIiGiPEg 201 (370)
T PF02994_consen 146 IDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNNIRIIGIPEG 201 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----
T ss_pred HHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCceeEEecCCC
Confidence 33333333333333333333333333333333344443333333222566666554
No 206
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=66.57 E-value=27 Score=33.36 Aligned_cols=44 Identities=16% Similarity=0.310 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEK 114 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~ 114 (153)
.|+..++.+-..++.....|..++...++++..|..+|..|+.+
T Consensus 280 ~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~ 323 (581)
T KOG0995|consen 280 AYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQ 323 (581)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444443
No 207
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=66.37 E-value=60 Score=27.30 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=16.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 50 KRLKRVISNRESARRSRMRKKKLIEELQAQVNH 82 (153)
Q Consensus 50 KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~ 82 (153)
=|.||+...-.+-++-|.-=+.=.++|..-|-.
T Consensus 58 yk~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~ 90 (229)
T KOG1319|consen 58 YKDRRRRAHTQAEQKRRDAIKRGYDDLQTLVPT 90 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHhccc
Confidence 356666555555555554444444555554443
No 208
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=66.29 E-value=12 Score=25.65 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISL 97 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L 97 (153)
+.|..++..|+..|..|..++..|
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~L 40 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLL 40 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 209
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=66.25 E-value=54 Score=24.66 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041582 94 LISLLESNHQIVQENSQLKEKV 115 (153)
Q Consensus 94 i~~L~~~~~~L~~EN~~Lr~~l 115 (153)
+..+..++..|..+|..|-.+|
T Consensus 107 ~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 107 LSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444443333
No 210
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=66.23 E-value=1e+02 Score=30.03 Aligned_cols=24 Identities=8% Similarity=0.245 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 101 NHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 101 ~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
+..+...-..|..++..+...+..
T Consensus 602 ~e~a~d~Qe~L~~R~~~vl~~l~~ 625 (717)
T PF10168_consen 602 YEEAKDKQEKLMKRVDRVLQLLNS 625 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333333444444444333333
No 211
>PRK04863 mukB cell division protein MukB; Provisional
Probab=65.78 E-value=1.2e+02 Score=32.00 Aligned_cols=18 Identities=6% Similarity=-0.128 Sum_probs=9.2
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 041582 52 LKRVISNRESARRSRMRK 69 (153)
Q Consensus 52 ~RR~lkNReSArrSR~RK 69 (153)
.+.+.+.++.|.+.+.-+
T Consensus 323 L~kLEkQaEkA~kyleL~ 340 (1486)
T PRK04863 323 ESDLEQDYQAASDHLNLV 340 (1486)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555665554433
No 212
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=65.75 E-value=39 Score=34.44 Aligned_cols=73 Identities=16% Similarity=0.212 Sum_probs=45.5
Q ss_pred HHHHHhHHHHHHHHHH----HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 53 KRVISNRESARRSRMR----KKKL------IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVI 122 (153)
Q Consensus 53 RR~lkNReSArrSR~R----Kk~~------l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L 122 (153)
--+|++...|.|.+.- +..| ......+++.++.+...+..++..+++.+......+..|+.++..+...|
T Consensus 413 IerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L 492 (1041)
T KOG0243|consen 413 IERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKL 492 (1041)
T ss_pred HHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4578888888876532 1222 34455666777777777777777777777766666666666665555444
Q ss_pred HHh
Q 041582 123 SDL 125 (153)
Q Consensus 123 ~d~ 125 (153)
...
T Consensus 493 ~~~ 495 (1041)
T KOG0243|consen 493 QNK 495 (1041)
T ss_pred HHH
Confidence 433
No 213
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=65.44 E-value=80 Score=26.37 Aligned_cols=69 Identities=14% Similarity=0.191 Sum_probs=39.1
Q ss_pred HHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 55 VISNRESARRSRMRKKKLIE----ELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 55 ~lkNReSArrSR~RKk~~l~----eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
..+||.-+-..=.+|...+. .-...+..+..++..++..+..|..+...|...|..|...+..+...+.
T Consensus 182 ~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~ 254 (312)
T PF00038_consen 182 AQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLD 254 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHH
Confidence 44555554444333333222 2223455566666667777777777777777777777777766654433
No 214
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=65.35 E-value=97 Score=27.31 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 95 ISLLESNHQIVQENSQLKEKVSSLQLV 121 (153)
Q Consensus 95 ~~L~~~~~~L~~EN~~Lr~~l~~Lq~~ 121 (153)
+.|.-+++.|+.+|.+||.++..|-..
T Consensus 251 E~l~ge~~~Le~rN~~LK~qa~~lerE 277 (294)
T KOG4571|consen 251 EALLGELEGLEKRNEELKDQASELERE 277 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555444444333
No 215
>PLN02678 seryl-tRNA synthetase
Probab=64.92 E-value=28 Score=31.99 Aligned_cols=49 Identities=14% Similarity=0.327 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 75 ELQAQVNHVQTVNHQLSEKLISLL---ESNHQIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 75 eLE~kv~~Le~eN~~L~~~i~~L~---~~~~~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
.|..+++.|+.+.+.+.+++..+. +....|..+-+.|++++..|...+.
T Consensus 44 ~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~ 95 (448)
T PLN02678 44 QRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQ 95 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555554321 1222344444445555544443333
No 216
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=64.84 E-value=55 Score=25.16 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 041582 90 LSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAP 128 (153)
Q Consensus 90 L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~ 128 (153)
|..+.+.|.-+...|..+-..|..++..|+..|.+++.+
T Consensus 75 L~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~ 113 (119)
T COG1382 75 LEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGD 113 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444444444455555566666777777787777777754
No 217
>PF14645 Chibby: Chibby family
Probab=64.65 E-value=21 Score=26.98 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582 98 LESNHQIVQENSQLKEKVSSLQLVISDL 125 (153)
Q Consensus 98 ~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~ 125 (153)
.++++.|..||..|+-++.-|-..|++.
T Consensus 77 ~~~n~~L~EENN~Lklk~elLlDMLtet 104 (116)
T PF14645_consen 77 RKENQQLEEENNLLKLKIELLLDMLTET 104 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445556666666666555555543
No 218
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=64.59 E-value=13 Score=26.46 Aligned_cols=13 Identities=46% Similarity=0.756 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 041582 104 IVQENSQLKEKVS 116 (153)
Q Consensus 104 L~~EN~~Lr~~l~ 116 (153)
+..||..|+.++.
T Consensus 5 i~eEn~~Lk~eiq 17 (76)
T PF07334_consen 5 IQEENARLKEEIQ 17 (76)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 219
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=64.32 E-value=71 Score=25.36 Aligned_cols=59 Identities=19% Similarity=0.213 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLR 130 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~ 130 (153)
+..++...|..+..+...-..++..|..-...-...-..|..++..|..-|.+.+-++.
T Consensus 55 ~~~~~~~~v~~~~~~i~~k~~El~~L~~~d~~kv~~~E~L~d~v~eLkeel~~el~~l~ 113 (146)
T PF05852_consen 55 EECEIKNKVSSLETEISEKKKELSHLKKFDRKKVEDLEKLTDRVEELKEELEFELERLQ 113 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777777777777777777777765555666667788888888877777777665
No 220
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=64.32 E-value=38 Score=22.98 Aligned_cols=30 Identities=17% Similarity=0.284 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 68 RKKKLIEELQAQVNHVQTVNHQLSEKLISL 97 (153)
Q Consensus 68 RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L 97 (153)
.....+..++.+++.++.+|..|..++..|
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777777766655
No 221
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=64.08 E-value=47 Score=25.51 Aligned_cols=40 Identities=18% Similarity=0.245 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 68 RKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQE 107 (153)
Q Consensus 68 RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~E 107 (153)
.|..-+++|+.+++.|+-+...|..+...+++++..|..+
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~ 106 (119)
T COG1382 67 SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSE 106 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777777776666666555544
No 222
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=64.06 E-value=71 Score=28.21 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
.+.+|+.++..+..||..|...+.........|.+|...|+.+.......|.+..
T Consensus 242 qivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQ 296 (306)
T PF04849_consen 242 QIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQ 296 (306)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666666777777777777666666665543
No 223
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=64.03 E-value=39 Score=30.25 Aligned_cols=31 Identities=23% Similarity=0.199 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 89 QLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 89 ~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
.|..++..+..+...+..|...|+.++..|+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 33 FLDIQEEYIKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333344444455555555554
No 224
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=63.98 E-value=78 Score=25.75 Aligned_cols=61 Identities=20% Similarity=0.214 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 66 RMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 66 R~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
..+....+.+||.++-.|+.+...+..+..........+..+...|.+.+.........+.
T Consensus 126 ~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~~ 186 (190)
T PF05266_consen 126 LKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSVA 186 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667788888888888888888877888888888999999999999988876666554
No 225
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=63.95 E-value=46 Score=25.32 Aligned_cols=41 Identities=29% Similarity=0.337 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 79 QVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 79 kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
+|-.|+.-...|.+++....+++-.|..||+.|-+=++.|.
T Consensus 64 QVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLM 104 (120)
T KOG3650|consen 64 QVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLM 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Confidence 33344444445666666666666777777777777776664
No 226
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=63.72 E-value=54 Score=29.76 Aligned_cols=73 Identities=22% Similarity=0.350 Sum_probs=42.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Q 041582 49 EKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLIS--------------LLESNHQIVQENSQLKEK 114 (153)
Q Consensus 49 ~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~--------------L~~~~~~L~~EN~~Lr~~ 114 (153)
.-|.|.+.-|-|.-|.-|. -+++-..+.++|+..|++|..++.. |+.-...+..||..|..+
T Consensus 74 q~kirk~~e~~eglr~i~e----s~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlq 149 (401)
T PF06785_consen 74 QTKIRKITEKDEGLRKIRE----SVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQ 149 (401)
T ss_pred HHHHHHHHhccHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666555443 2333344555666666666666543 334455666777777777
Q ss_pred HHHHHHHHHHh
Q 041582 115 VSSLQLVISDL 125 (153)
Q Consensus 115 l~~Lq~~L~d~ 125 (153)
|.++.....++
T Consensus 150 L~~l~~e~~Ek 160 (401)
T PF06785_consen 150 LDALQQECGEK 160 (401)
T ss_pred HHHHHHHHhHh
Confidence 77776655443
No 227
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=63.62 E-value=54 Score=32.34 Aligned_cols=55 Identities=25% Similarity=0.367 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 68 RKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVI 122 (153)
Q Consensus 68 RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L 122 (153)
||+..+..|..++.++......++..|..|...+.....++..|...+..|+..|
T Consensus 298 rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rl 352 (775)
T PF10174_consen 298 RKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRL 352 (775)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4555666666777777777777766666666666555555555555555554443
No 228
>PF12737 Mating_C: C-terminal domain of homeodomain 1; InterPro: IPR024441 Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is found in the C-terminal of some mating-type proteins.
Probab=63.18 E-value=25 Score=32.11 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041582 66 RMRKKKLIEELQAQVNHVQTVN 87 (153)
Q Consensus 66 R~RKk~~l~eLE~kv~~Le~eN 87 (153)
|.-|++++.+|+.++..|++|.
T Consensus 397 ~~AK~reL~eLeAq~~aL~AEL 418 (419)
T PF12737_consen 397 REAKRRELEELEAQARALRAEL 418 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4447778899999999998874
No 229
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=63.00 E-value=59 Score=31.01 Aligned_cols=46 Identities=24% Similarity=0.358 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVS 116 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~ 116 (153)
..+++|..++..++.+...|...+..+..+......++..|..++.
T Consensus 335 ~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 335 EQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666666666666666666666666666666666666665554
No 230
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=62.84 E-value=1.3e+02 Score=31.15 Aligned_cols=71 Identities=24% Similarity=0.259 Sum_probs=52.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 49 EKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 49 ~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
.+..+-.+.||.--..--+++-..++++..+.-.|+.++..|..++..|++.+..+...+..|......|+
T Consensus 372 ~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~ 442 (1195)
T KOG4643|consen 372 DRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQ 442 (1195)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888877777777777888888888888888888888888777777766666666655554444
No 231
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=62.57 E-value=57 Score=23.65 Aligned_cols=46 Identities=9% Similarity=0.220 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
+..+...+..|-.....|..+...|..+...|...|++.|.++..-
T Consensus 28 ~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~ 73 (83)
T PF03670_consen 28 YAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQ 73 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444455555555555566677777777666543
No 232
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=62.32 E-value=90 Score=25.89 Aligned_cols=73 Identities=12% Similarity=0.171 Sum_probs=47.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 54 RVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 54 R~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
++..-..-..|.-.--+.+...|...+..-+..-......-...+.+...|..|...+..+|..|+.++..+.
T Consensus 109 ~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq 181 (192)
T PF11180_consen 109 QLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQ 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445455555555555566666666666666666665555666666777788888888888888877776665
No 233
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=62.25 E-value=1.3e+02 Score=30.55 Aligned_cols=60 Identities=22% Similarity=0.126 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 59 RESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 59 ReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
-++++.+.....+...+|..++..+..+-..+..+.+.....+..++.|-..|..++..|
T Consensus 454 le~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~l 513 (980)
T KOG0980|consen 454 LESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEEL 513 (980)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444433333333333334444444444333333
No 234
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=62.25 E-value=65 Score=25.28 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 041582 66 RMRKKKLIEELQAQVNHVQT---VNHQLSEKLISLLESNH 102 (153)
Q Consensus 66 R~RKk~~l~eLE~kv~~Le~---eN~~L~~~i~~L~~~~~ 102 (153)
+.--+..+.+...++..|.. .|..|..++..|+..+.
T Consensus 29 ~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 29 RDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 33344445555555555555 55555555555555444
No 235
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=62.16 E-value=39 Score=30.04 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHhc
Q 041582 112 KEKVSSLQLVISDLL 126 (153)
Q Consensus 112 r~~l~~Lq~~L~d~~ 126 (153)
|.+|..|+..|..+.
T Consensus 193 K~KIR~lq~~L~~~~ 207 (342)
T PF06632_consen 193 KAKIRELQRLLASAK 207 (342)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 344445554444443
No 236
>PRK14127 cell division protein GpsB; Provisional
Probab=61.88 E-value=36 Score=25.67 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041582 103 QIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 103 ~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
.|..+|..|+.++..++..+.
T Consensus 48 ~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 48 ELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 334444445555555544444
No 237
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=61.77 E-value=90 Score=29.03 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 69 KKKLIEELQAQVNHVQTVNHQLSEKLIS 96 (153)
Q Consensus 69 Kk~~l~eLE~kv~~Le~eN~~L~~~i~~ 96 (153)
=++++...|..+..|+.||..|..+.-.
T Consensus 46 i~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 46 IKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788888888888888888776543
No 238
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=61.69 E-value=48 Score=25.73 Aligned_cols=45 Identities=18% Similarity=0.229 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSS 117 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~ 117 (153)
+....+.+..|+.||.-|+..+..+++-+..=...-..|+++|..
T Consensus 80 l~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~ 124 (126)
T PF13118_consen 80 LDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKI 124 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 445556677777788777777777777776666666666666554
No 239
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.47 E-value=1.5e+02 Score=30.07 Aligned_cols=35 Identities=14% Similarity=0.263 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcccccccCCC
Q 041582 104 IVQENSQLKEKVSSLQLVISDLLAPLRGLEEVNGN 138 (153)
Q Consensus 104 L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~~~~~n 138 (153)
+.+.+..|..++..|+..+..+-+.++++.-+..|
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt 469 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITT 469 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccch
Confidence 44555666777777777666666666555544433
No 240
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=61.43 E-value=50 Score=33.87 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 69 KKKLIEELQAQVNHVQTVNHQLSEKLISLLE 99 (153)
Q Consensus 69 Kk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~ 99 (153)
+.++++.|+..+-.|+.||..|..+|..|..
T Consensus 528 ~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 528 LSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4566788888999999999999999988866
No 241
>PRK14127 cell division protein GpsB; Provisional
Probab=61.40 E-value=36 Score=25.62 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLL 98 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~ 98 (153)
++.....++.|..+|..|..++..|+
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~ 57 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLK 57 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443333
No 242
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=61.38 E-value=54 Score=24.28 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLES 100 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~ 100 (153)
+-|..++..++.+|..|..++..+...
T Consensus 18 ~LlRRkl~ele~eN~~l~~EL~kyk~~ 44 (96)
T PF11365_consen 18 ELLRRKLSELEDENKQLTEELNKYKSK 44 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566667777777777776666543
No 243
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=61.28 E-value=38 Score=22.95 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLIS 96 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~ 96 (153)
+++|+.++..|+.|...+...+..
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777787777777777776654
No 244
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=61.17 E-value=83 Score=25.11 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 47 INEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESN 101 (153)
Q Consensus 47 ~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~ 101 (153)
.-.+..+++++.|.-|+-.=.+|-....+|..++...+.....|...|..|....
T Consensus 81 ~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m 135 (152)
T PF11500_consen 81 KAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQM 135 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567788888888888888888899999888888877777777777654433
No 245
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=61.12 E-value=1.3e+02 Score=27.38 Aligned_cols=9 Identities=33% Similarity=0.427 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 041582 107 ENSQLKEKV 115 (153)
Q Consensus 107 EN~~Lr~~l 115 (153)
|-..||++|
T Consensus 277 Ei~~LKqeL 285 (395)
T PF10267_consen 277 EIYNLKQEL 285 (395)
T ss_pred HHHHHHHHH
Confidence 333344444
No 246
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=60.59 E-value=59 Score=23.68 Aligned_cols=41 Identities=29% Similarity=0.408 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 041582 88 HQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAP 128 (153)
Q Consensus 88 ~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~ 128 (153)
..|..++..+......|...-..|+.++..++..|..++.|
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~~~ 110 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEALAP 110 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34445555555556666666666777777777777776654
No 247
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=60.39 E-value=48 Score=29.24 Aligned_cols=46 Identities=26% Similarity=0.342 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
..|...+..++.++..|..++..+......+..+...|+.++..|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 4 EALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555555555555555555555555555555555555555554
No 248
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=60.37 E-value=65 Score=26.09 Aligned_cols=42 Identities=26% Similarity=0.433 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
+.=.|.++..|+.+|..|..++..|.. ...+|..+-.++..+
T Consensus 42 vSL~erQ~~~LR~~~~~L~~~l~~Li~----~Ar~Ne~~~~~~~~l 83 (225)
T PF04340_consen 42 VSLVERQLERLRERNRQLEEQLEELIE----NARENEAIFQRLHRL 83 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 445567888888888888888777653 334555555554433
No 249
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=60.13 E-value=60 Score=23.13 Aligned_cols=59 Identities=22% Similarity=0.314 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 68 RKKKLIEELQAQVNHVQTVNHQLSE---KLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 68 RKk~~l~eLE~kv~~Le~eN~~L~~---~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
.-+..++.|..+.+.+..+...+.. ....|..+...+..+-..|..++..+...|...+
T Consensus 40 ~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 40 ELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666655555554 2455555555555666666666666655555554
No 250
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.02 E-value=97 Score=26.64 Aligned_cols=47 Identities=13% Similarity=0.326 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 041582 75 ELQAQVNHVQTVNHQLSEKLISLLESNHQIV----QENSQLKEKVSSLQLV 121 (153)
Q Consensus 75 eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~----~EN~~Lr~~l~~Lq~~ 121 (153)
+|...+..++++..+|..++..++....... .-+..|..++..|+-.
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~ 104 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRML 104 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Confidence 4555555555555566666666655555555 4555566666666543
No 251
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=59.78 E-value=16 Score=33.97 Aligned_cols=46 Identities=26% Similarity=0.257 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
+.|..+|..|..+|..|..++..+.-.+..++.||+-|+.--..+|
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQ 91 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQ 91 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHh
Confidence 4567777788888888888888888888888888877765544443
No 252
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=59.59 E-value=92 Score=25.10 Aligned_cols=38 Identities=13% Similarity=0.319 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQ 110 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~ 110 (153)
..+|+.++..|+.++..|..++..+..++..+...+..
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e 159 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEE 159 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777776666655444443
No 253
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=59.56 E-value=68 Score=23.54 Aligned_cols=69 Identities=14% Similarity=0.167 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCCCCccccc
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLEEVNGNMNRPRAEA 146 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~~~~~n~~~~~~~~ 146 (153)
.+.+...+...+..|..|...+..-+.........+..++.+....+..+..++.. +.-+|++-|.++.
T Consensus 34 n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ik~~lk~-----d~Ca~~~~P~~V~ 102 (110)
T PF10828_consen 34 NKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRESIKTALKD-----DPCANTAVPDAVI 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----CccccCCCCHHHH
Confidence 34555666666666777777776666666666677778888888888888887643 2234666665544
No 254
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=59.22 E-value=1.2e+02 Score=28.02 Aligned_cols=42 Identities=12% Similarity=0.188 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 77 QAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 77 E~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
..-+..|+.|..+|.++|+.-.++....+.+...|..+|..-
T Consensus 138 DDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeE 179 (561)
T KOG1103|consen 138 DDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEE 179 (561)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334667888999999998877777777777777776666544
No 255
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=59.19 E-value=48 Score=32.46 Aligned_cols=47 Identities=15% Similarity=0.228 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582 79 QVNHVQTVNHQLSEKLISLLE---SNHQIVQENSQLKEKVSSLQLVISDL 125 (153)
Q Consensus 79 kv~~Le~eN~~L~~~i~~L~~---~~~~L~~EN~~Lr~~l~~Lq~~L~d~ 125 (153)
....|+.||-.|.++|..|.. .+.++.-|++.|.+++..|..+|.++
T Consensus 98 dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~ 147 (717)
T PF09730_consen 98 DYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEA 147 (717)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777766643 45566666666666666665554444
No 256
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=58.99 E-value=21 Score=28.77 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=2.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 96 SLLESNHQIVQENSQLKEKVSSLQLVI 122 (153)
Q Consensus 96 ~L~~~~~~L~~EN~~Lr~~l~~Lq~~L 122 (153)
.|+..++.|..|-+.||+++ .++..+
T Consensus 28 ~L~~~~QRLkDE~RDLKqEl-~V~ek~ 53 (166)
T PF04880_consen 28 NLREEVQRLKDELRDLKQEL-IVQEKL 53 (166)
T ss_dssp HHHHCH---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 34444455555555555555 444333
No 257
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=58.50 E-value=43 Score=26.02 Aligned_cols=41 Identities=20% Similarity=0.189 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 78 AQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 78 ~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
..+..++.....+...+..|+.+...-..|-..|+.+|..+
T Consensus 80 a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~ 120 (131)
T PF04859_consen 80 AEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDEL 120 (131)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333334444444444444433
No 258
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=58.47 E-value=65 Score=23.02 Aligned_cols=54 Identities=24% Similarity=0.200 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
+-.+|..++..-+.|...|..-++.|+.+......-|..|..+...++.. .++.
T Consensus 6 qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~-~~~~ 59 (76)
T PF11544_consen 6 QNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRS-NDLN 59 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccch
Confidence 34677788888888888888888888888888888888888888877765 4443
No 259
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=58.45 E-value=1.4e+02 Score=26.95 Aligned_cols=46 Identities=20% Similarity=0.348 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 041582 77 QAQVNHVQTVNHQLSEKLISLLE---SNHQIVQENSQLKEKVSSLQLVI 122 (153)
Q Consensus 77 E~kv~~Le~eN~~L~~~i~~L~~---~~~~L~~EN~~Lr~~l~~Lq~~L 122 (153)
..+++.|+.+.+.+.+++..+.. ....|..+-+.|++++..|...+
T Consensus 41 ~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 89 (425)
T PRK05431 41 QTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAEL 89 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555443211 12234444455555555444333
No 260
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=58.29 E-value=12 Score=23.92 Aligned_cols=41 Identities=32% Similarity=0.338 Sum_probs=8.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 53 KRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKL 94 (153)
Q Consensus 53 RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i 94 (153)
++...|++=|+..-... ..+.+||.++..|..||-.|+..+
T Consensus 4 k~~~qn~~laK~Ns~l~-~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 4 KYSRQNRELAKRNSALS-IKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ---------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhHHHH-hHHHHHHhHHHHHHHHHHHHHHHh
Confidence 34444554444333322 235566666666666666555543
No 261
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=58.27 E-value=60 Score=28.21 Aligned_cols=52 Identities=13% Similarity=0.249 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
.|+.+..++..|+.+|..+..+...-....-.+..|...+..++..+...+.
T Consensus 245 Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~ 296 (309)
T PF09728_consen 245 EMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIE 296 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666655555555566666665555555554443
No 262
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=58.16 E-value=1.1e+02 Score=25.55 Aligned_cols=65 Identities=17% Similarity=0.303 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 60 ESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 60 eSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
+.+...|....++.++|+.++..|+.+...|+.++..++.........-..+.........++.|
T Consensus 105 en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~~K~~~eaanrwtD 169 (203)
T KOG3433|consen 105 ENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVHLEKTMAEAANRWTD 169 (203)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33444444455555555555555555555555555544443333333333333333333333333
No 263
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.98 E-value=1.1e+02 Score=30.95 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 68 RKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 68 RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
+-...++.|...+..|+.+|..|..+++.....+..|..++.-|+.+++...
T Consensus 668 ~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~ 719 (970)
T KOG0946|consen 668 ELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIIS 719 (970)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3344455556666666666666666666666666666666666666665443
No 264
>PF14282 FlxA: FlxA-like protein
Probab=57.73 E-value=73 Score=23.34 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQT----VNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 74 ~eLE~kv~~Le~----eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
..|..++..|.. ....-..++..|+.+...|..+-..|..+...-
T Consensus 29 ~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 29 KQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred HHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544 113344555556666666666655555554433
No 265
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=57.68 E-value=81 Score=34.12 Aligned_cols=64 Identities=22% Similarity=0.236 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 63 RRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 63 rrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
|....+.-..+.+|..++..+..+...|...+..|..+.....+++..|+.+......+..+++
T Consensus 1235 Ree~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~ 1298 (1822)
T KOG4674|consen 1235 REENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLL 1298 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777778888777777777777777777777777777777777766666655555
No 266
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=57.65 E-value=80 Score=27.58 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDL 125 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~ 125 (153)
+.|+..+..|+.+...|...++.+..-...+......|+.++..|+....++
T Consensus 147 ~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~ 198 (312)
T smart00787 147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDEL 198 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 5667788888888888888888888777777777777777777776655543
No 267
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=57.15 E-value=74 Score=30.49 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582 70 KKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDL 125 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~ 125 (153)
..|...|......+...+..|..++..|.+........-..|...|..|+..++..
T Consensus 14 d~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~ 69 (617)
T PF15070_consen 14 DQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEP 69 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34555555555555555555555555555555555555555555555554444433
No 268
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=56.85 E-value=1e+02 Score=24.81 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 041582 67 MRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQ-IVQENSQLKEKVSSLQ 119 (153)
Q Consensus 67 ~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~-L~~EN~~Lr~~l~~Lq 119 (153)
..-...+..|+.+...|+.+...|..++..+...... ...+++....++..|.
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk 176 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLK 176 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667778888888888888887777777666554 3444555555555554
No 269
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=56.82 E-value=73 Score=23.10 Aligned_cols=11 Identities=45% Similarity=0.510 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 041582 105 VQENSQLKEKV 115 (153)
Q Consensus 105 ~~EN~~Lr~~l 115 (153)
..+...|...+
T Consensus 94 ~~~~~k~e~~l 104 (126)
T PF13863_consen 94 KSEISKLEEKL 104 (126)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 270
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=56.64 E-value=71 Score=30.04 Aligned_cols=57 Identities=16% Similarity=0.127 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISL---L----ESNHQIVQENSQLKEKVSSLQLVISDLLA 127 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L---~----~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~ 127 (153)
+.++.||.+++.|+.+...|..++..- . .....+..|-..++.++..+-..+.++.-
T Consensus 563 ~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~ 626 (638)
T PRK10636 563 KEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQE 626 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888887777776421 1 13455566666677777666666555543
No 271
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=56.62 E-value=31 Score=26.08 Aligned_cols=29 Identities=31% Similarity=0.421 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 96 SLLESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 96 ~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
.|+.+...|+.||.-|+-++..|...|+.
T Consensus 76 rlkkk~~~LeEENNlLklKievLLDMLte 104 (108)
T cd07429 76 RLKKKNQQLEEENNLLKLKIEVLLDMLAE 104 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666777777777777666654
No 272
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=56.60 E-value=1.1e+02 Score=24.94 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQL 120 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~ 120 (153)
..+..|+.++..+......|..++..|+.++..+...-..|..+....++
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a 148 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASS 148 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777777777777777777777777766666666655544
No 273
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=56.56 E-value=1.3e+02 Score=26.07 Aligned_cols=60 Identities=12% Similarity=0.163 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 041582 69 KKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAP 128 (153)
Q Consensus 69 Kk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~ 128 (153)
....+...+.+++.++.+-.+..+++..+..+.......-..|..+...|...+.++..-
T Consensus 198 ~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sK 257 (269)
T PF05278_consen 198 KDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSK 257 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555555555555555555555555555555555555555555555443
No 274
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=56.37 E-value=73 Score=28.36 Aligned_cols=53 Identities=17% Similarity=0.300 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISL---LESNHQIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L---~~~~~~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
+|++.|+.+++.++.+...|..+++.. ..+...+..+-..+..++..+...+.
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~ 297 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIA 297 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666655554322 22233344444444444444444433
No 275
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=56.19 E-value=75 Score=23.28 Aligned_cols=28 Identities=18% Similarity=0.420 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLES 100 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~ 100 (153)
+.+++.+.-.+...|..|..++..|..+
T Consensus 19 L~~v~~~~l~l~~~n~el~~el~~l~~~ 46 (106)
T PF05837_consen 19 LSDVEKKRLRLKRRNQELAQELLELAEK 46 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555554433
No 276
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=55.81 E-value=2.1e+02 Score=31.41 Aligned_cols=50 Identities=22% Similarity=0.330 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041582 78 AQVNHVQTVNHQLSEKLIS-------LLESNHQIVQENSQLKEKVSSLQLVISDLLA 127 (153)
Q Consensus 78 ~kv~~Le~eN~~L~~~i~~-------L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~ 127 (153)
..++.+..+|..|..++.. +....+.|...++.|-.+...|+..|.++..
T Consensus 1484 e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~ 1540 (1930)
T KOG0161|consen 1484 EQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEA 1540 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443 3344556666666666777777766666654
No 277
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=55.61 E-value=31 Score=26.53 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISL 97 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L 97 (153)
.++.|..++.+|+..|..|..++..|
T Consensus 68 EVe~Lk~qI~eL~er~~~Le~EN~lL 93 (123)
T KOG4797|consen 68 EVEVLKEQIRELEERNSALERENSLL 93 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 278
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=55.42 E-value=87 Score=23.50 Aligned_cols=49 Identities=20% Similarity=0.220 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 78 AQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 78 ~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
.+...|..+...-...+..++.+++.|.--|..|-.++..|+..|....
T Consensus 26 ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~ 74 (102)
T PF10205_consen 26 AKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESE 74 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444445556666777777777888888888877776443
No 279
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=55.23 E-value=2.3e+02 Score=28.49 Aligned_cols=75 Identities=12% Similarity=0.159 Sum_probs=51.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 51 RLKRVISNRESARRSRMRKKKLIE------------------------ELQAQVNHVQTVNHQLSEKLISLLESNHQIVQ 106 (153)
Q Consensus 51 R~RR~lkNReSArrSR~RKk~~l~------------------------eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~ 106 (153)
+..+..--|++|---|.|.+..+. .| .+.+.|..+...+++++..+......|..
T Consensus 166 ~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAl-e~kn~L~~e~~s~kk~l~~~~~~k~rl~~ 244 (916)
T KOG0249|consen 166 RKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAAL-EDKNRLEQELESVKKQLEEMRHDKDKLRT 244 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555567777666666655442 12 24566777777788888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 041582 107 ENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 107 EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
.+..|+.++..|+.......
T Consensus 245 d~E~Lr~e~~qL~~~~~~~~ 264 (916)
T KOG0249|consen 245 DIEDLRGELDQLRRSSLEKE 264 (916)
T ss_pred hHHHHHHHHHHHHHHHHhhh
Confidence 88899998888875444443
No 280
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=55.15 E-value=89 Score=27.64 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041582 106 QENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 106 ~EN~~Lr~~l~~Lq~~L~d 124 (153)
.|-++||+=+..++..|.|
T Consensus 124 kEIkQLkQvieTmrssL~e 142 (305)
T PF15290_consen 124 KEIKQLKQVIETMRSSLAE 142 (305)
T ss_pred HHHHHHHHHHHHHHhhhch
Confidence 3444444444444444433
No 281
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=55.11 E-value=2.3e+02 Score=28.81 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEK 114 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~ 114 (153)
+++..++..|+.....+...+..+...+..+......+..+
T Consensus 442 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1163)
T COG1196 442 EELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKE 482 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333443333333333333333333333
No 282
>PRK10963 hypothetical protein; Provisional
Probab=54.97 E-value=67 Score=26.32 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 76 LQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 76 LE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
.|.++..|+.+|..|..++..|. ....+|..|-.++..|
T Consensus 42 ~ErQ~~~LR~r~~~Le~~l~~Li----~~A~~Ne~l~~~~~~l 80 (223)
T PRK10963 42 VEWQMARQRNHIHVLEEEMTLLM----EQAIANEDLFYRLLPL 80 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 34556666666666666655543 2234455554444333
No 283
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=54.96 E-value=70 Score=30.55 Aligned_cols=27 Identities=26% Similarity=0.414 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLL 98 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~ 98 (153)
.+..|..++..|+.++..|..++..|+
T Consensus 504 ~~~~L~~~~~~Le~e~~~L~~~~~~Le 530 (722)
T PF05557_consen 504 ELNELQKEIEELERENERLRQELEELE 530 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555554
No 284
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=54.61 E-value=1e+02 Score=24.16 Aligned_cols=56 Identities=13% Similarity=0.141 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLE--------SNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~--------~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
+-++.|+.+++.|..+...+...+..... .++....+-..|..++..|...|..+.
T Consensus 11 eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~~A~ 74 (158)
T PRK05892 11 AARDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLRTGP 74 (158)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhCE
Confidence 34577888888888777777777644443 366777777888888999988888765
No 285
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=54.41 E-value=91 Score=23.47 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 75 ELQAQVNHVQTVNHQLSEKLISLLESNHQIVQ 106 (153)
Q Consensus 75 eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~ 106 (153)
.++.++..++.+...+..++..|..++..+..
T Consensus 52 ~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~ 83 (150)
T PF07200_consen 52 SLEPELEELRSQLQELYEELKELESEYQEKEQ 83 (150)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444433333
No 286
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=54.26 E-value=77 Score=28.38 Aligned_cols=30 Identities=20% Similarity=0.137 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 94 LISLLESNHQIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 94 i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
+..|+.+...+..+...++.++..+...|.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (398)
T PTZ00454 31 LEFLDIQEEYIKEEQKNLKRELIRAKEEVK 60 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 287
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=53.92 E-value=1.7e+02 Score=26.41 Aligned_cols=57 Identities=23% Similarity=0.306 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 70 KKLIEELQAQVNHVQTVNHQLSE---KLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~L~~---~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
+..++.|..+.+.+..+...+.. ..+.|..+...+..+-..|.+++..+...+.+.+
T Consensus 41 ~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T PRK05431 41 QTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELL 100 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555554444444433211 1223444444444455555555555544444433
No 288
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=53.92 E-value=48 Score=27.55 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 041582 88 HQLSEKLISLLESNHQIVQENS---QLKEKVSSLQLVI 122 (153)
Q Consensus 88 ~~L~~~i~~L~~~~~~L~~EN~---~Lr~~l~~Lq~~L 122 (153)
..|.+++..|++++..|..++. .|+++...|+..|
T Consensus 72 ~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 72 FDLREENEELKKELLELESRLQELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555555554 3344444444444
No 289
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=53.88 E-value=1.4e+02 Score=32.74 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 63 RRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQ 103 (153)
Q Consensus 63 rrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~ 103 (153)
..-..-....+..|+.++..++..++.|..+-..+++.+..
T Consensus 956 ~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~ 996 (1930)
T KOG0161|consen 956 ELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRE 996 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344445555555555555555544444444443333
No 290
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=53.72 E-value=79 Score=27.94 Aligned_cols=34 Identities=12% Similarity=0.077 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQI 104 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L 104 (153)
+|+=.+|.+.+....|...|..++..|+.+...+
T Consensus 64 ~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~ 97 (389)
T PF06216_consen 64 DYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQ 97 (389)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555554433333
No 291
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=53.69 E-value=36 Score=27.97 Aligned_cols=67 Identities=18% Similarity=0.207 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 47 INEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 47 ~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
-+=.|.+|..+++ -+..+.++.+|+.++..|+.+... ++..+..|...|....
T Consensus 88 ~Ey~R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~---------------------~~~~~~~L~~~l~~~~ 140 (181)
T KOG3335|consen 88 FEYWRQARKERKK------EEKRKQEIMELRLKVEKLENAIAE---------------------LTKFFSQLHSKLNKPE 140 (181)
T ss_pred ehhHHhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHcCcc
Confidence 3455666665555 344455566666666655553333 3344444444444444
Q ss_pred cCcccccccCCCCC
Q 041582 127 APLRGLEEVNGNMN 140 (153)
Q Consensus 127 ~~~~~~~~~~~n~~ 140 (153)
.++..+.+.+||..
T Consensus 141 ~el~~~~q~~p~~~ 154 (181)
T KOG3335|consen 141 SELKPIRQAPPNPG 154 (181)
T ss_pred ccccccccCCCCCC
Confidence 45555666666543
No 292
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=53.56 E-value=4.4 Score=34.52 Aligned_cols=41 Identities=29% Similarity=0.418 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
..+++...++.+|..- +..|..++..|..||..|+++-..|
T Consensus 122 T~IEEQ~T~I~dLrrl-------Ve~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 122 TRIEEQATKIADLRRL-------VEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp ------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444 4444444444444555554444444
No 293
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=53.49 E-value=38 Score=24.47 Aligned_cols=31 Identities=16% Similarity=0.175 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 90 LSEKLISLLESNHQIVQENSQLKEKVSSLQL 120 (153)
Q Consensus 90 L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~ 120 (153)
+...+..|...++.+..+|..|..++..++.
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4556677788888889999999998887753
No 294
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=53.43 E-value=59 Score=22.57 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582 90 LSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDL 125 (153)
Q Consensus 90 L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~ 125 (153)
|..++..+......|..+-..|..++..+...|...
T Consensus 67 L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 67 LEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444455555555555555443
No 295
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=53.14 E-value=74 Score=25.04 Aligned_cols=40 Identities=25% Similarity=0.262 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQL 111 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~L 111 (153)
++++|-.+++.|+..-.....++...+.-..+|..|-..|
T Consensus 7 ~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL 46 (134)
T PF15233_consen 7 QIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSL 46 (134)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666555445555544444444444443333
No 296
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=53.05 E-value=84 Score=30.49 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLE 99 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~ 99 (153)
+..+|+..+..++.++..|..++..+..
T Consensus 437 e~~~L~~~~ee~k~eie~L~~~l~~~~r 464 (652)
T COG2433 437 ENSELKRELEELKREIEKLESELERFRR 464 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555544443
No 297
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=52.94 E-value=1.3e+02 Score=24.66 Aligned_cols=58 Identities=14% Similarity=0.276 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 67 MRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 67 ~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
.-|+.-|+.||.+|.+.+.-.......+..-+........-....+.++..|...|..
T Consensus 63 ~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~ 120 (188)
T PF05335_consen 63 AGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKA 120 (188)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999998888888777766665555555555555555555544443
No 298
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.86 E-value=2.1e+02 Score=28.97 Aligned_cols=57 Identities=26% Similarity=0.382 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 67 MRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 67 ~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
.+=|..+.+|.-+++.+.+.+.+|..+++.|.+++.....+-..|+.++..|..+|.
T Consensus 660 ~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 660 QKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334555566666666677777777777777777777777777777777777777766
No 299
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=52.73 E-value=1.1e+02 Score=23.86 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 78 AQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 78 ~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
.++..+..++..+..++.........+..+-..++.+...++
T Consensus 84 eKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~ 125 (177)
T PF13870_consen 84 EKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLR 125 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444333333
No 300
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=52.56 E-value=1.3e+02 Score=24.54 Aligned_cols=56 Identities=16% Similarity=0.287 Sum_probs=38.7
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 48 NEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQ 103 (153)
Q Consensus 48 e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~ 103 (153)
+-...++.+++-+.-+.+=..-+..+..++.++..|+-++..|..++..+..+...
T Consensus 70 e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Erde 125 (201)
T PF13851_consen 70 EVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDE 125 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777777777666667777777777777777777777777666655443
No 301
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=52.47 E-value=35 Score=29.61 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 95 ISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 95 ~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
.+|+.++..|..+-..|++++..---.+.|+.
T Consensus 224 seLq~r~~~l~~~L~~L~~e~~r~~l~~~Dm~ 255 (289)
T COG4985 224 SELQKRLAQLQTELDALRAELERQFLYLVDMQ 255 (289)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhceEEEEccC
Confidence 33333333333333333333333333333333
No 302
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=52.36 E-value=27 Score=26.86 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041582 94 LISLLESNHQIVQENSQLKEKVS 116 (153)
Q Consensus 94 i~~L~~~~~~L~~EN~~Lr~~l~ 116 (153)
++.|..+...|.-||+.|+.++.
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~ 27 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLR 27 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666677777776653
No 303
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=52.34 E-value=1.6e+02 Score=27.71 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKL 94 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i 94 (153)
.+++|+.++..++.+-..+..++
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i 232 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEI 232 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433333333
No 304
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=52.16 E-value=91 Score=30.78 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 95 ISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 95 ~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
..|......++.||..|+-++.-|
T Consensus 137 ~~l~~~l~~~eken~~Lkye~~~~ 160 (769)
T PF05911_consen 137 EDLMARLESTEKENSSLKYELHVL 160 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554433
No 305
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=52.10 E-value=1.7e+02 Score=28.21 Aligned_cols=50 Identities=20% Similarity=0.222 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582 76 LQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDL 125 (153)
Q Consensus 76 LE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~ 125 (153)
.+.=|..++..++.+-..+..|...+...+.|+..|+.+...|+..+.-.
T Consensus 278 ~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 278 FQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ 327 (581)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445555555566666667777777777777777777777777665543
No 306
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=52.10 E-value=84 Score=28.72 Aligned_cols=57 Identities=21% Similarity=0.249 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 041582 72 LIEELQAQVNHVQTVNHQLSE--KLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAP 128 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~--~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~ 128 (153)
++.+|+.++..++.....+.. .-..+..+...+..+...|+.++..|+..|.++...
T Consensus 171 Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~ 229 (475)
T PF10359_consen 171 RLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDLEDS 229 (475)
T ss_pred HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345666666666655555432 333455677778888888999998888888888754
No 307
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=51.96 E-value=62 Score=26.93 Aligned_cols=34 Identities=29% Similarity=0.352 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 86 VNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 86 eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
+......++..|+.....|..||.+||+-.-.|-
T Consensus 109 eV~~Y~~KL~eLE~kq~~L~rEN~eLKElcl~LD 142 (195)
T PF10226_consen 109 EVAQYQQKLKELEDKQEELIRENLELKELCLYLD 142 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 3333444456666667778888888887776664
No 308
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=51.96 E-value=1e+02 Score=24.21 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 80 VNHVQTVNHQLSEKLISLLESNHQIVQENSQL 111 (153)
Q Consensus 80 v~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~L 111 (153)
++.|......|...+..|......+..++..+
T Consensus 103 ~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~ 134 (145)
T COG1730 103 IEELEKAIEKLQQALAELAQRIEQLEQEAQQL 134 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444444443
No 309
>PRK14160 heat shock protein GrpE; Provisional
Probab=51.94 E-value=1.3e+02 Score=25.00 Aligned_cols=44 Identities=25% Similarity=0.363 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKV 115 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l 115 (153)
.+..|+.++..|+.++..|..++..+..++..+.++..-+|.+.
T Consensus 55 ~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~ 98 (211)
T PRK14160 55 KIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRT 98 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666677777666666666666655554443
No 310
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=51.77 E-value=1.4e+02 Score=26.50 Aligned_cols=32 Identities=22% Similarity=0.203 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQ 103 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~ 103 (153)
....|..+|..|+..|..+++++........+
T Consensus 79 e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eg 110 (389)
T PF06216_consen 79 EWISLNDQVSHLQHQNSEQRQQIREMREIIEG 110 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555555555555555444443333
No 311
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=51.69 E-value=1.3e+02 Score=24.44 Aligned_cols=43 Identities=19% Similarity=0.267 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 70 KKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLK 112 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr 112 (153)
+..+..++.++..|+.+...+..++...++....+...+...+
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~ 104 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRR 104 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444443333
No 312
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=51.34 E-value=5 Score=38.20 Aligned_cols=43 Identities=26% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 60 ESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNH 102 (153)
Q Consensus 60 eSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~ 102 (153)
++.-..-++|.+.+++|..+|..|+..|..|...+..|+++..
T Consensus 314 E~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~ 356 (713)
T PF05622_consen 314 ENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELK 356 (713)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344568888999999999999999888887766665433
No 313
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=51.03 E-value=1.3e+02 Score=25.46 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 82 HVQTVNHQLSEKLISL-LESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 82 ~Le~eN~~L~~~i~~L-~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
++...-..++.++..+ ..+...|.+||..|+.+++.++..|.+-.
T Consensus 98 QQ~~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr~ei 143 (220)
T KOG3156|consen 98 QQKVDFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSLRHEI 143 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566666555 45677888999999999988877766554
No 314
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=50.89 E-value=39 Score=25.80 Aligned_cols=19 Identities=16% Similarity=0.391 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQ 89 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~ 89 (153)
+.+++|+.++..|+.+...
T Consensus 112 ~~l~~L~~~i~~L~~~~~~ 130 (134)
T PF07047_consen 112 ERLEELEERIEELEEQVEK 130 (134)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554443
No 315
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=50.85 E-value=79 Score=24.05 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 70 KKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQE 107 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~E 107 (153)
+.-+++|-.+|.....||-.|+.+++-|-+...-|+.-
T Consensus 69 QnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSa 106 (120)
T KOG3650|consen 69 QNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSA 106 (120)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhh
Confidence 34567888888888888888888877776666555543
No 316
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=50.84 E-value=1.1e+02 Score=23.45 Aligned_cols=63 Identities=17% Similarity=0.193 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccc
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKL-ISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLE 133 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i-~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~ 133 (153)
..+..+...+..|+..+..|..+. ..++....-|+.=-..|-.++..++.+|..+..++|.-+
T Consensus 55 ~~~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~eVSddE 118 (136)
T PF04871_consen 55 AELEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKELGEEVSDDE 118 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCccCCc
Confidence 335556666666666666666544 445555555665556667777777788888888887666
No 317
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=50.69 E-value=56 Score=29.31 Aligned_cols=42 Identities=24% Similarity=0.229 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 80 VNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLV 121 (153)
Q Consensus 80 v~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~ 121 (153)
|++++..|.+|..+|..-++++.-|..-|++==.++..|-..
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqT 43 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQT 43 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888887777776666555544455555433
No 318
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=50.66 E-value=1.3e+02 Score=26.94 Aligned_cols=56 Identities=21% Similarity=0.344 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582 70 KKLIEELQAQVNHVQTV------NHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDL 125 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~e------N~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~ 125 (153)
+..++.|+..+..+... .......+..+...+..+..+...|..++..|+..|...
T Consensus 347 ~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 347 KEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444431 234455666777777788888888888888888888776
No 319
>PRK11546 zraP zinc resistance protein; Provisional
Probab=50.64 E-value=1.2e+02 Score=24.01 Aligned_cols=46 Identities=13% Similarity=0.113 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
.+|..++-.-+.|.+.|...-..=.+....|..|...|+.+|..++
T Consensus 64 ~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r 109 (143)
T PRK11546 64 SALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELR 109 (143)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334333333333456667777777777776554
No 320
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=50.60 E-value=1.3e+02 Score=24.74 Aligned_cols=47 Identities=23% Similarity=0.400 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
...+-.-...+..||..|...+..+..++..|...+..|..+-..|+
T Consensus 151 ~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~ 197 (206)
T PF14988_consen 151 KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQ 197 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677788888888888888888888888888877776664
No 321
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=50.34 E-value=1e+02 Score=28.85 Aligned_cols=54 Identities=9% Similarity=0.173 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISL---L---ESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L---~---~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
++.||.+++.|+.+...|..++..- . .....+..|-..++.++..+...+..+.
T Consensus 570 ~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 629 (635)
T PRK11147 570 LEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFERWEELE 629 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999988888887432 1 1566677777777888877777766544
No 322
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=50.24 E-value=78 Score=21.48 Aligned_cols=42 Identities=10% Similarity=0.213 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 83 VQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 83 Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
+..+....+..+-.+..+.+.....|..|..++..|...+.+
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555556666666666666666555544
No 323
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=50.17 E-value=2.1e+02 Score=27.81 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNH 102 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~ 102 (153)
+..|..++..|+.+...|...+..+.+.+.
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~ 272 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQ 272 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333333
No 324
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=49.75 E-value=1.4e+02 Score=28.83 Aligned_cols=19 Identities=16% Similarity=0.417 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041582 76 LQAQVNHVQTVNHQLSEKL 94 (153)
Q Consensus 76 LE~kv~~Le~eN~~L~~~i 94 (153)
|+.+|+.|+.++..|..+|
T Consensus 84 L~~everLraei~~l~~~I 102 (632)
T PF14817_consen 84 LEKEVERLRAEIQELDKEI 102 (632)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333
No 325
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=49.71 E-value=53 Score=31.90 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041582 75 ELQAQVNHVQTVNHQLSEK 93 (153)
Q Consensus 75 eLE~kv~~Le~eN~~L~~~ 93 (153)
.||..|+.|+.|.+..+..
T Consensus 422 rLE~dvkkLraeLq~~Rq~ 440 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQS 440 (697)
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 4444444444444443333
No 326
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=49.61 E-value=53 Score=29.26 Aligned_cols=32 Identities=22% Similarity=0.173 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 041582 81 NHVQTVNHQLSEKLISLLES---NHQIVQENSQLK 112 (153)
Q Consensus 81 ~~Le~eN~~L~~~i~~L~~~---~~~L~~EN~~Lr 112 (153)
-.|..||.+|+.++..|+.+ +..+..||..|+
T Consensus 60 ~~L~~EN~~Lk~Ena~L~~~l~~~e~l~~En~~Lr 94 (337)
T PRK14872 60 LVLETENFLLKERIALLEERLKSYEEANQTPPLFS 94 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555544444332 334445565444
No 327
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=49.59 E-value=47 Score=27.43 Aligned_cols=40 Identities=25% Similarity=0.294 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 041582 90 LSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPL 129 (153)
Q Consensus 90 L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~ 129 (153)
|......|..++..|..+|..|..++..|+..+.....++
T Consensus 110 lE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~ 149 (198)
T KOG0483|consen 110 LEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKREM 149 (198)
T ss_pred hhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 4444455555666666666666666666666666554433
No 328
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=49.36 E-value=1.3e+02 Score=23.58 Aligned_cols=56 Identities=23% Similarity=0.306 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
..+++....+..|...-.....+-..|...+..|..+...|..-...+...|....
T Consensus 21 ~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~ 76 (157)
T PF04136_consen 21 DQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFE 76 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 34555556666677777777777777778888888888888888888876665443
No 329
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=49.32 E-value=1.1e+02 Score=28.52 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 70 KKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
..|++-|...+.+....-..+...+..+.++...+..+-..|.-+|..|
T Consensus 431 prYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l 479 (507)
T PF05600_consen 431 PRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDAL 479 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3456666666665555555566555555555555555555555555444
No 330
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=49.29 E-value=75 Score=28.02 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 75 ELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLK 112 (153)
Q Consensus 75 eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr 112 (153)
+|+.+++.|+..+..|..++..+..+...+..++..|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 12 ELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555555555555555555555555555554444
No 331
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=49.19 E-value=88 Score=21.76 Aligned_cols=41 Identities=24% Similarity=0.286 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582 85 TVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDL 125 (153)
Q Consensus 85 ~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~ 125 (153)
..-.........|+..+.....+|..|++++..|..+|..+
T Consensus 21 ~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~L 61 (70)
T PF04899_consen 21 KQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRL 61 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555555555666666666666665555443
No 332
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=49.18 E-value=1.4e+02 Score=23.92 Aligned_cols=58 Identities=21% Similarity=0.316 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhccCcc
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL--QLVISDLLAPLR 130 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L--q~~L~d~~~~~~ 130 (153)
+..|+..+..+......|...+..+..++..+..+-..|+.+.... +..+.+....++
T Consensus 100 ~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~ 159 (221)
T PF04012_consen 100 AERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFS 159 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3444455555555555566666666666666666655555554333 344455544433
No 333
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=48.74 E-value=2.6e+02 Score=28.82 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 59 RESARRSRMRKKKLIEELQAQVNHVQTVNHQLS 91 (153)
Q Consensus 59 ReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~ 91 (153)
.+..+....+.+..+..|+.++..+..+...+.
T Consensus 845 ~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~ 877 (1311)
T TIGR00606 845 IELNRKLIQDQQEQIQHLKSKTNELKSEKLQIG 877 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555444444444444333
No 334
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=48.46 E-value=1.7e+02 Score=24.89 Aligned_cols=8 Identities=25% Similarity=0.638 Sum_probs=5.1
Q ss_pred cCcccccc
Q 041582 127 APLRGLEE 134 (153)
Q Consensus 127 ~~~~~~~~ 134 (153)
.|+.|...
T Consensus 276 AP~dG~V~ 283 (423)
T TIGR01843 276 SPVDGTVQ 283 (423)
T ss_pred CCCCcEEE
Confidence 58777654
No 335
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=48.41 E-value=5.9 Score=33.75 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISL 97 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L 97 (153)
.+.+|...|..|..+|..|..++..|
T Consensus 130 ~I~dLrrlVe~L~aeNErLr~EnkqL 155 (243)
T PF08961_consen 130 KIADLRRLVEFLLAENERLRRENKQL 155 (243)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777666666544
No 336
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=47.71 E-value=1.1e+02 Score=22.55 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 81 NHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 81 ~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
+.|...+..|..++..+..++..+......+.+++..|+
T Consensus 76 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 76 EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666665555555555555555555554
No 337
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=47.49 E-value=1.9e+02 Score=27.02 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSS 117 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~ 117 (153)
..+-.+...++.+...+.++++..+-....|..||..|.++.-.
T Consensus 30 s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 30 SRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555556666666666666666666666655433
No 338
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=47.37 E-value=46 Score=23.75 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKL 94 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i 94 (153)
.++.|..++..|..+|..|..++
T Consensus 76 ~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 76 QIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555544
No 339
>PHA03155 hypothetical protein; Provisional
Probab=47.22 E-value=30 Score=26.58 Aligned_cols=21 Identities=14% Similarity=0.128 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041582 80 VNHVQTVNHQLSEKLISLLES 100 (153)
Q Consensus 80 v~~Le~eN~~L~~~i~~L~~~ 100 (153)
|++|..+...|.-++..|..+
T Consensus 10 vEeLaaeL~kL~~ENK~LKkk 30 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKK 30 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555554444444443
No 340
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=47.18 E-value=58 Score=33.44 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 78 AQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEK 114 (153)
Q Consensus 78 ~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~ 114 (153)
-++++|+.+...+..++..+...+..|..++..|...
T Consensus 822 lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~k 858 (1174)
T KOG0933|consen 822 LEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAK 858 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333344443333333
No 341
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=46.70 E-value=1.3e+02 Score=23.00 Aligned_cols=12 Identities=17% Similarity=0.033 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 041582 103 QIVQENSQLKEK 114 (153)
Q Consensus 103 ~L~~EN~~Lr~~ 114 (153)
.|+..++..+.+
T Consensus 57 MLE~aLkqER~k 68 (134)
T PF08232_consen 57 MLEYALKQERAK 68 (134)
T ss_pred HHHHHHHHHHHH
Confidence 333443333333
No 342
>PRK15396 murein lipoprotein; Provisional
Probab=46.49 E-value=1e+02 Score=21.85 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQ 110 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~ 110 (153)
.++.|..+|..|..+..+|...+..++...+....|-.+
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~r 64 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAAR 64 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777766666666666666555544444333
No 343
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=46.39 E-value=2.5e+02 Score=26.21 Aligned_cols=35 Identities=23% Similarity=0.237 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 78 AQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLK 112 (153)
Q Consensus 78 ~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr 112 (153)
++...|+.+...|..+-..|..+.++|.++-+.|.
T Consensus 144 ~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 144 KQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333334444444444333
No 344
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=46.28 E-value=97 Score=21.43 Aligned_cols=52 Identities=15% Similarity=0.378 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
++++...+..++.+-..+..++..+..+.+.+...-..-.+.+..+-..+.+
T Consensus 28 l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~ 79 (90)
T PF06103_consen 28 LDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVAD 79 (90)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4555555555555555555555555555555554444444444444333333
No 345
>PF05929 Phage_GPO: Phage capsid scaffolding protein (GPO) serine peptidase; InterPro: IPR009228 This entry is represented by Bacteriophage P2, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacteriophage capsid scaffolding protein (GpO) and some related bacterial sequences. GpO is thought to function in both the assembly of proheads and the cleavage of GpN [].; GO: 0019069 viral capsid assembly
Probab=46.23 E-value=1.6e+02 Score=25.50 Aligned_cols=61 Identities=23% Similarity=0.308 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 041582 70 KKLIEELQAQVNHVQTVNHQLSEKLI-SLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLR 130 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~L~~~i~-~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~ 130 (153)
.+.+.++..-|+.+-.....+..++. .+......+......|..+...+...+..+...++
T Consensus 191 ~~~~~~~~~ave~ia~~~~~~~~~~~~~ls~~~~~~~~~~~~l~~~~~~~~~~f~~L~~~L~ 252 (276)
T PF05929_consen 191 DEQFADLQQAVEAIAEQQQELEEAFEEQLSEQETQVAELKQELKEQHEALTEDFAALKEKLS 252 (276)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhh
Confidence 56667777777777666666555544 24444444444455555555666666666655533
No 346
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=46.18 E-value=89 Score=20.92 Aligned_cols=36 Identities=19% Similarity=0.370 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 80 VNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVS 116 (153)
Q Consensus 80 v~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~ 116 (153)
...|+..|.-|..+.. +..+...|+.+|.+|+.-|.
T Consensus 22 ~~~l~rY~~vL~~R~~-l~~e~~~L~~qN~eLr~lLk 57 (60)
T PF14775_consen 22 ENFLKRYNKVLLDRAA-LIQEKESLEQQNEELRSLLK 57 (60)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3456667766666654 44555778888888776654
No 347
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.16 E-value=72 Score=30.97 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 83 VQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 83 Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
|+.+...++-+-..|-..|..|+.||-.|..++..|+
T Consensus 154 lr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR 190 (772)
T KOG0999|consen 154 LRDELKEYKFREARLLSEYSELEEENISLQKQVSNLR 190 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHh
Confidence 3333334444444444455555555555555555554
No 348
>PRK14148 heat shock protein GrpE; Provisional
Probab=46.13 E-value=1.1e+02 Score=25.08 Aligned_cols=9 Identities=22% Similarity=0.242 Sum_probs=3.8
Q ss_pred HHHHHhccC
Q 041582 120 LVISDLLAP 128 (153)
Q Consensus 120 ~~L~d~~~~ 128 (153)
..+.++++.
T Consensus 91 ~~~~~LLpV 99 (195)
T PRK14148 91 KFAKELLPV 99 (195)
T ss_pred HHHHHHhhH
Confidence 334444443
No 349
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.08 E-value=1.1e+02 Score=21.76 Aligned_cols=54 Identities=15% Similarity=0.091 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
...||.++..|+...+--...|..|..........-..++.++..|-..+.++.
T Consensus 3 ~~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 3 DMELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 357888898888887776666666655555555555556666666655555554
No 350
>PRK11546 zraP zinc resistance protein; Provisional
Probab=46.07 E-value=1.5e+02 Score=23.43 Aligned_cols=29 Identities=17% Similarity=0.123 Sum_probs=16.1
Q ss_pred cchhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 041582 45 SIINEKRLKRVISNRESARRSRMRKKKLI 73 (153)
Q Consensus 45 ~~~e~KR~RR~lkNReSArrSR~RKk~~l 73 (153)
-+.|....-..|.+.--++-...|.+-+.
T Consensus 44 LT~EQQa~~q~I~~~f~~~t~~LRqqL~a 72 (143)
T PRK11546 44 LTTEQQAAWQKIHNDFYAQTSALRQQLVS 72 (143)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666665555554443
No 351
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=45.68 E-value=2.4e+02 Score=26.01 Aligned_cols=56 Identities=13% Similarity=-0.011 Sum_probs=31.1
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCcccccCC---------ccchhHHHHHHHHHhHH
Q 041582 3 SNFSGRFLSNSQFHVPVHIFSPNTSVSPRSGSALDEARETP---------ASIINEKRLKRVISNRE 60 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~---------~~~~e~KR~RR~lkNRe 60 (153)
+.|.+. .+.+.-..+....+..+..++..+.-. +..++. .....|||.|=.|.+|+
T Consensus 188 ~~~~~~-~~~~~~~~~~~~~s~~s~~~~~~rt~~-~~~~~~~~rdr~Krd~HNeVERRRR~nIN~~I 252 (411)
T KOG1318|consen 188 NVYPSE-GQFNVPMTGHDSASCPSQLSIGPRTHP-KTDATALERDRRKRDNHNEVERRRRENINDRI 252 (411)
T ss_pred cccccc-CCCCCCCCccccccCccccCCCCCCCC-CcccchhHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 456666 677777777777776665554321111 212121 23455666666888775
No 352
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=45.49 E-value=75 Score=23.46 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041582 97 LLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 97 L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
.......+...|..|..++....
T Consensus 42 ar~e~~~~e~k~~~le~~l~e~~ 64 (100)
T PF06428_consen 42 ARRERAALEEKNEQLEKQLKEKE 64 (100)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666665444
No 353
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=45.44 E-value=1.3e+02 Score=28.87 Aligned_cols=42 Identities=19% Similarity=0.307 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKV 115 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l 115 (153)
..+..++..+..+|..|..++..++.+...+.-|+..|.+-|
T Consensus 222 ~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~L 263 (596)
T KOG4360|consen 222 QSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHL 263 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555555555555555555554444443
No 354
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=45.43 E-value=1.2e+02 Score=22.17 Aligned_cols=43 Identities=19% Similarity=0.209 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 69 KKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQL 111 (153)
Q Consensus 69 Kk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~L 111 (153)
|+.|=..-+.+|..|+.++..|..++..|..+......|-..|
T Consensus 40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666666666666666666555555554444
No 355
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=45.42 E-value=1.5e+02 Score=23.19 Aligned_cols=8 Identities=38% Similarity=0.630 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 041582 104 IVQENSQL 111 (153)
Q Consensus 104 L~~EN~~L 111 (153)
|..||..|
T Consensus 87 L~~ENe~l 94 (135)
T TIGR03495 87 LKRENEDL 94 (135)
T ss_pred HHHcCHHH
Confidence 33333333
No 356
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=45.40 E-value=1.8e+02 Score=24.29 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLIS 96 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~ 96 (153)
++.+|+.+++.....-..|...+..
T Consensus 82 ~~qeLe~~L~~~~qk~~tl~e~~en 106 (203)
T KOG3433|consen 82 VLQELESQLATGSQKKATLGESIEN 106 (203)
T ss_pred HHHHHHHHHHHhhhhHhHHHHHHHH
Confidence 3444555555554444444444433
No 357
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=45.34 E-value=1.7e+02 Score=29.01 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVI 122 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L 122 (153)
++.....+..++.+-..+..+|..|...+.....+...|..++..|...|
T Consensus 359 l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l 408 (775)
T PF10174_consen 359 LEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQL 408 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444445555555555555555555555655555554443
No 358
>PHA03162 hypothetical protein; Provisional
Probab=45.28 E-value=32 Score=27.06 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041582 95 ISLLESNHQIVQENSQLKEKV 115 (153)
Q Consensus 95 ~~L~~~~~~L~~EN~~Lr~~l 115 (153)
+.|..+...|.-||+.|+.++
T Consensus 16 EeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 16 EDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666666665
No 359
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=45.23 E-value=1.8e+02 Score=24.27 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 75 ELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 75 eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
.|+..+..++.+...+...+..|+.....|...-..|+.+...|
T Consensus 96 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l 139 (225)
T COG1842 96 SLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEAL 139 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445554444444444444555555545554444444
No 360
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.22 E-value=17 Score=29.34 Aligned_cols=28 Identities=14% Similarity=0.112 Sum_probs=21.5
Q ss_pred CCCCCCCCCCCcccccCCCC-CCCCCCCC
Q 041582 7 GRFLSNSQFHVPVHIFSPNT-SVSPRSGS 34 (153)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~-s~~~~~~~ 34 (153)
-.||++-+|++|+..|-++| ||-.+-.+
T Consensus 82 l~Fp~~YPy~pP~vkFltpc~HPNVD~~G 110 (175)
T KOG0421|consen 82 LSFPNNYPYKPPTVKFLTPCFHPNVDLSG 110 (175)
T ss_pred EecCCCCCCCCCeeEeeccccCCCccccc
Confidence 35999999999999987666 76665433
No 361
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=45.06 E-value=47 Score=27.45 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 79 QVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 79 kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
+..+|+.+...|+.++..|...+..|..|+..|+.++..+...+..
T Consensus 106 K~kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~~~ 151 (198)
T KOG0483|consen 106 KTKQLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKREMQK 151 (198)
T ss_pred cchhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhcc
Confidence 3456888888899999999999999999999999999877654443
No 362
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=45.02 E-value=54 Score=23.39 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041582 81 NHVQTVNHQLSEKLISL 97 (153)
Q Consensus 81 ~~Le~eN~~L~~~i~~L 97 (153)
..+..+|..|..++..|
T Consensus 3 ~ei~eEn~~Lk~eiqkl 19 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKL 19 (76)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666666665543
No 363
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.93 E-value=1e+02 Score=26.56 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESN 101 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~ 101 (153)
+.+|+.++..|+.+..+|.. ++.++.+.
T Consensus 58 ~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~ 85 (262)
T COG1729 58 LTQLEQQLRQLQGKIEELRG-IQELQYQN 85 (262)
T ss_pred cHHHHHHHHHHHhhHHHHHh-HHHHHHHH
Confidence 46677777777766666665 55554444
No 364
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=44.91 E-value=1.3e+02 Score=22.29 Aligned_cols=59 Identities=19% Similarity=0.172 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKL-ISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLR 130 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i-~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~ 130 (153)
....++..+..++.|...|...+ ...-.....-..+...+..+...|...|.+...-+.
T Consensus 9 ~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~ 68 (100)
T PF06428_consen 9 RREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLE 68 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555543 222222222233344555666666666666554433
No 365
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=44.90 E-value=2.1e+02 Score=25.07 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 041582 88 HQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAP 128 (153)
Q Consensus 88 ~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~ 128 (153)
..+..+|..|+.+...+..+|..|-..+..|..++.+..+.
T Consensus 223 ~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~ 263 (279)
T KOG0837|consen 223 KRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQK 263 (279)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 45666788888888899999999999999999988887654
No 366
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=44.81 E-value=1.4e+02 Score=22.89 Aligned_cols=12 Identities=25% Similarity=0.393 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 041582 101 NHQIVQENSQLK 112 (153)
Q Consensus 101 ~~~L~~EN~~Lr 112 (153)
...|...+..|+
T Consensus 64 ~~~l~~~~~kl~ 75 (136)
T PF04871_consen 64 VKELEAEKEKLK 75 (136)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 367
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=44.40 E-value=39 Score=30.63 Aligned_cols=31 Identities=13% Similarity=0.034 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLESNH 102 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~ 102 (153)
..-.|..+-..|+.||+.|+.+++.|+....
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456778888888888888888888855443
No 368
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=44.38 E-value=1.6e+02 Score=26.13 Aligned_cols=51 Identities=18% Similarity=0.322 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 65 SRMRKKKLIEELQA---QVNHVQTVN----HQLSEKLISLLESNHQIVQENSQLKEKV 115 (153)
Q Consensus 65 SR~RKk~~l~eLE~---kv~~Le~eN----~~L~~~i~~L~~~~~~L~~EN~~Lr~~l 115 (153)
+..+.+.|+++.+. +.+.|+... ..|...+.....+...|.+||..|..+|
T Consensus 22 ~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkL 79 (305)
T PF14915_consen 22 NQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKL 79 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHH
Confidence 45566677776652 333333222 2344445555566777777777776665
No 369
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=44.35 E-value=1.9e+02 Score=27.71 Aligned_cols=48 Identities=21% Similarity=0.205 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
.-+.++..++..+-.....+...+.....++.....||..|..+|..+
T Consensus 198 ~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~ 245 (596)
T KOG4360|consen 198 QLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDL 245 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444433333344444444444444444444444444444
No 370
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=44.17 E-value=35 Score=29.83 Aligned_cols=27 Identities=37% Similarity=0.406 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 70 KKLIEELQAQVNHVQTVNHQLSEKLIS 96 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~L~~~i~~ 96 (153)
..+|.++|.+|+.|+--|..|..+++.
T Consensus 216 ldRmk~aEaqvneLEvsN~DLsaKLe~ 242 (311)
T PF04642_consen 216 LDRMKEAEAQVNELEVSNIDLSAKLEP 242 (311)
T ss_pred HHHHHHHHhhhhheecccHHHHHhhcC
Confidence 356788999999999999999998843
No 371
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.76 E-value=3.1e+02 Score=27.98 Aligned_cols=32 Identities=25% Similarity=0.222 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 041582 97 LLESNHQIVQENSQLKEKVSSLQLVISDLLAP 128 (153)
Q Consensus 97 L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~ 128 (153)
+..+...|..|-..|..++..|...|.|+...
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~ 466 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVD 466 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheec
Confidence 34455666666666666666666666666543
No 372
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=43.57 E-value=88 Score=25.40 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 70 KKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIV 105 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~ 105 (153)
.+++..|..+.+.|..++..|..+....++.+..|.
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li 145 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALI 145 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666666666665555555443
No 373
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=43.41 E-value=53 Score=23.07 Aligned_cols=25 Identities=20% Similarity=0.502 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISL 97 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L 97 (153)
+..++.+...|+.+|..|.-++..|
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555555555555443
No 374
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=43.37 E-value=1.4e+02 Score=22.23 Aligned_cols=46 Identities=17% Similarity=0.206 Sum_probs=26.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 54 RVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLE 99 (153)
Q Consensus 54 R~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~ 99 (153)
.-..-|+.|+...-=++...+.|+.--+.|..+...-.++|..|++
T Consensus 52 ~~f~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~ 97 (100)
T PF04568_consen 52 GAFGKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEK 97 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566678888766555555555555555555554445555555543
No 375
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=43.31 E-value=1.5e+02 Score=22.68 Aligned_cols=49 Identities=10% Similarity=0.190 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 76 LQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 76 LE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
.|..-..=+-|-++|..+|..|+-+...+++=|..|..++.-|...|.+
T Consensus 16 ~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkq 64 (134)
T PF08232_consen 16 FERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQ 64 (134)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555666666666666666666666666666555444433
No 376
>PLN02320 seryl-tRNA synthetase
Probab=43.11 E-value=2.9e+02 Score=25.99 Aligned_cols=44 Identities=20% Similarity=0.373 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 79 QVNHVQTVNHQLSEKLISLL--ESNHQIVQENSQLKEKVSSLQLVI 122 (153)
Q Consensus 79 kv~~Le~eN~~L~~~i~~L~--~~~~~L~~EN~~Lr~~l~~Lq~~L 122 (153)
+++.|+.+.+.+.+++.... .....|..+-+.|+.++..|...+
T Consensus 108 ~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~ 153 (502)
T PLN02320 108 EVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDL 153 (502)
T ss_pred HHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443210 012244445555555555554433
No 377
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=42.93 E-value=47 Score=22.01 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLL 98 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~ 98 (153)
-.....++..|+.||..|..++..++
T Consensus 24 ~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 24 RSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667788888899999998887664
No 378
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=42.90 E-value=1.1e+02 Score=21.11 Aligned_cols=50 Identities=16% Similarity=0.287 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 77 QAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 77 E~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
..++..|..|=..|..+.-.+......|...+..+...+..|...+.+..
T Consensus 11 De~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e 60 (74)
T PF12329_consen 11 DEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELE 60 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555555554443
No 379
>PRK02224 chromosome segregation protein; Provisional
Probab=42.85 E-value=3.2e+02 Score=26.35 Aligned_cols=8 Identities=0% Similarity=-0.114 Sum_probs=4.0
Q ss_pred CCCCCCCC
Q 041582 24 PNTSVSPR 31 (153)
Q Consensus 24 ~~~s~~~~ 31 (153)
++|..|..
T Consensus 452 ~~Cp~C~r 459 (880)
T PRK02224 452 GKCPECGQ 459 (880)
T ss_pred ccCCCCCC
Confidence 44555554
No 380
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=42.67 E-value=1.5e+02 Score=24.52 Aligned_cols=56 Identities=23% Similarity=0.352 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAP 128 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~ 128 (153)
+..|+..+..|..+..........+......+...-..|...+..+...+.+++.-
T Consensus 54 l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~ 109 (264)
T PF06008_consen 54 LESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQ 109 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555555556666666666555555533
No 381
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=42.51 E-value=2.5e+02 Score=25.06 Aligned_cols=16 Identities=19% Similarity=0.287 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHhc
Q 041582 111 LKEKVSSLQLVISDLL 126 (153)
Q Consensus 111 Lr~~l~~Lq~~L~d~~ 126 (153)
|+..+...+..+.|+.
T Consensus 73 L~~~Ik~r~~~l~DmE 88 (330)
T PF07851_consen 73 LEEDIKERRCQLFDME 88 (330)
T ss_pred HHHHHHHHHhhHHHHH
Confidence 3333444444444444
No 382
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=42.36 E-value=1.9e+02 Score=23.65 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 79 QVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSS 117 (153)
Q Consensus 79 kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~ 117 (153)
++..|+..-..+..++-.++..+..|+.|...|+.+...
T Consensus 176 ~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~ 214 (221)
T PF05700_consen 176 ELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAE 214 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444333
No 383
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=42.26 E-value=1.4e+02 Score=24.73 Aligned_cols=56 Identities=18% Similarity=0.313 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
..+-.||.+|..++..-..+...+..-+++.-.+..+-..|++.+..|-.-+-.++
T Consensus 79 ~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L 134 (189)
T TIGR02132 79 SLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKIL 134 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777776665555555543344444555555555666655554444444
No 384
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=42.19 E-value=2.2e+02 Score=29.85 Aligned_cols=61 Identities=13% Similarity=0.231 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 60 ESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQL 120 (153)
Q Consensus 60 eSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~ 120 (153)
++...+-.+++..+.+++..+..+..+..+....+..+......+...-..+++++..+..
T Consensus 531 ~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks 591 (1293)
T KOG0996|consen 531 LASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKS 591 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666677777777776666666666666655555555444444455555544443
No 385
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=41.99 E-value=2.3e+02 Score=24.46 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 76 LQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 76 LE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
...-+.....+|..+.+++...++....|..+...|++++..|+....
T Consensus 177 ~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 177 MQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344556667889999999999999999999999999999999976655
No 386
>PRK11239 hypothetical protein; Provisional
Probab=41.79 E-value=55 Score=27.62 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLL 98 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~ 98 (153)
..|+.+|..|+.+...|+..+..|.
T Consensus 186 ~~Le~rv~~Le~eva~L~~~l~~l~ 210 (215)
T PRK11239 186 GDLQARVEALEIEVAELKQRLDSLL 210 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666666666666665555543
No 387
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=41.64 E-value=1.5e+02 Score=23.14 Aligned_cols=54 Identities=13% Similarity=0.144 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 73 IEELQAQVNHVQ-TVNHQLSEKLISLLE--------SNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 73 l~eLE~kv~~Le-~eN~~L~~~i~~L~~--------~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
++.|+.+++.|. .+..++..++..... .|+....+-..|..++..|...|..+.
T Consensus 10 ~~~L~~El~~L~~~~r~~~~~~i~~Ar~~GDlsENaeY~aak~~~~~le~rI~~L~~~L~~A~ 72 (156)
T TIGR01461 10 YEKLKQELNYLWREERPEVTQKVTWAASLGDRSENADYQYGKKRLREIDRRVRFLTKRLENLK 72 (156)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHhcCE
Confidence 345666666665 345555555554432 455666677788888888888888765
No 388
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=41.60 E-value=2e+02 Score=27.27 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 76 LQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLV 121 (153)
Q Consensus 76 LE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~ 121 (153)
.+.+...+..|...|..++...+.....+..|...+...+..|+..
T Consensus 432 adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDE 477 (518)
T PF10212_consen 432 ADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDE 477 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666555556666665555555555443
No 389
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=41.49 E-value=2.3e+02 Score=26.44 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLES----------NHQIVQENSQLKEKVSSLQLVISDLLAP 128 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~----------~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~ 128 (153)
....+...+..++..|..|..++..+.+. ...+..+-..|..++..+...+.....+
T Consensus 311 ~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ 377 (569)
T PRK04778 311 NSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIA 377 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 33455666666666666666666666665 3344444444444444444444433333
No 390
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=41.37 E-value=2.4e+02 Score=24.50 Aligned_cols=54 Identities=20% Similarity=0.213 Sum_probs=28.0
Q ss_pred chhHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 46 IINEKRLK--RVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLE 99 (153)
Q Consensus 46 ~~e~KR~R--R~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~ 99 (153)
...|++.+ ....+-..++..=..++..+.+++.++..|+.+......+...|+.
T Consensus 215 ~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~ 270 (344)
T PF12777_consen 215 EVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEE 270 (344)
T ss_dssp CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 3333334444444455666666666666666666555554444443
No 391
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=41.33 E-value=1.2e+02 Score=28.83 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 69 KKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEK 114 (153)
Q Consensus 69 Kk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~ 114 (153)
++.-...||.+|+.+=.+.+.|+.....+..+...++.|-..++.+
T Consensus 361 ~nsI~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~ 406 (557)
T PF01763_consen 361 SNSINKCLEGQINNQFDTIEDLKEENQDLEKKLRELESELSRYREE 406 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455678888887777777777777766666666666665555554
No 392
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=41.24 E-value=2.5e+02 Score=24.75 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041582 102 HQIVQENSQLKEKVSSLQLVI 122 (153)
Q Consensus 102 ~~L~~EN~~Lr~~l~~Lq~~L 122 (153)
..+..+...+..++..++..+
T Consensus 96 ~~l~~~l~~~~~~l~~l~~~~ 116 (372)
T PF04375_consen 96 QQLQQELAQLQQQLAELQQQL 116 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 393
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=41.18 E-value=2.4e+02 Score=24.51 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISL 97 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L 97 (153)
..||.++..++.++.....++..+
T Consensus 168 ~~LeqELvraEae~lvaEAqL~n~ 191 (271)
T PF13805_consen 168 VVLEQELVRAEAENLVAEAQLSNI 191 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHh
Confidence 444444444444444444444333
No 394
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=41.17 E-value=1e+02 Score=28.81 Aligned_cols=55 Identities=24% Similarity=0.261 Sum_probs=27.1
Q ss_pred ccchhHHHHHHHHHhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 44 ASIINEKRLKRVISNRESARRSRMRKKKL----------IEELQAQVNHVQTVNHQLSEKLISLL 98 (153)
Q Consensus 44 ~~~~e~KR~RR~lkNReSArrSR~RKk~~----------l~eLE~kv~~Le~eN~~L~~~i~~L~ 98 (153)
.-..+.||.|-|++--||-|+.+.==... =.+|..+|..|+.+|..|..++..|+
T Consensus 249 iLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQ 313 (472)
T KOG0709|consen 249 ILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQ 313 (472)
T ss_pred HHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 44444555555555555555554422211 13455555555555555555555443
No 395
>PRK14160 heat shock protein GrpE; Provisional
Probab=40.87 E-value=1.7e+02 Score=24.35 Aligned_cols=15 Identities=13% Similarity=0.217 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 041582 76 LQAQVNHVQTVNHQL 90 (153)
Q Consensus 76 LE~kv~~Le~eN~~L 90 (153)
|+.++..|+.+...|
T Consensus 66 l~~~l~~l~~e~~el 80 (211)
T PRK14160 66 LKEENKKLENELEAL 80 (211)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 396
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=40.87 E-value=1.6e+02 Score=26.01 Aligned_cols=52 Identities=21% Similarity=0.249 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 64 RSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKV 115 (153)
Q Consensus 64 rSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l 115 (153)
.-|++..+.+.+|+.+...|..+|......+..|..+...+..--.-|...+
T Consensus 101 ~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l 152 (355)
T PF09766_consen 101 EQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYL 152 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 3456666677777777777777777777777766666665555444444443
No 397
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=40.74 E-value=2e+02 Score=29.47 Aligned_cols=45 Identities=13% Similarity=0.134 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 80 VNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 80 v~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
|..|+.+...+..+|..|+..+..++.|...|..-+..++..+.+
T Consensus 94 v~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke 138 (1265)
T KOG0976|consen 94 VNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKE 138 (1265)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555555555554444444444433
No 398
>COG4345 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.70 E-value=1.9e+02 Score=23.83 Aligned_cols=57 Identities=14% Similarity=0.286 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccc
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLE 133 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~ 133 (153)
.+|+.++...+.++.++...+..+-.+...+.+ .|++-.......+..+.+--.||+
T Consensus 121 ~el~eK~~~~~~Everi~~~ieE~v~eLe~~a~---~lke~~~~i~~l~~~ik~~~~g~~ 177 (181)
T COG4345 121 KELEEKLADAMEEVERIEKTIEELVSELESLAN---KLKEVTDVINSLVERIKQEHTGLK 177 (181)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHcccchhh
Confidence 567777888888888888887777665555555 466555555566665555544443
No 399
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=40.58 E-value=1.9e+02 Score=23.10 Aligned_cols=45 Identities=9% Similarity=0.096 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKV 115 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l 115 (153)
.|++.|..++..++.+...|...+.....+...+...-..+..++
T Consensus 79 ~~r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~i 123 (158)
T PF09486_consen 79 RYRDVLEERVRAAEAELAALRQALRAAEDEIAATRRAIARNDARI 123 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 344555555555555555555555444444444444443333333
No 400
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.22 E-value=1.4e+02 Score=25.21 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 78 AQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 78 ~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
.++..++..|..|..+++.|. ....+|..|-.++..|+..|.
T Consensus 45 ~ql~r~R~~~~~Le~~l~~L~----~~A~~N~~lf~r~~~lq~~Ll 86 (218)
T COG3159 45 RQLARLRNRIRELEEELAALM----ENARANERLFYRLHALQLDLL 86 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHhhHHHHHHHHHHHHHHH
Confidence 344444444444444444432 334566666666665554443
No 401
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=40.16 E-value=1.5e+02 Score=22.87 Aligned_cols=61 Identities=25% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccc
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLEE 134 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~~ 134 (153)
+.|..--.+|......|-.++....+-......+-..++..+..+..-+..+..-+++||.
T Consensus 57 ~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ 117 (126)
T PF07889_consen 57 ESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEG 117 (126)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
No 402
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=40.10 E-value=1.4e+02 Score=26.49 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLL 98 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~ 98 (153)
++-..++..|..||..|......|.
T Consensus 56 e~ek~e~s~LkREnq~l~e~c~~le 80 (307)
T PF10481_consen 56 EEEKNEYSALKRENQSLMESCENLE 80 (307)
T ss_pred HHHhhhhhhhhhhhhhHHHHHHHHH
Confidence 3334455566666666665554444
No 403
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=39.98 E-value=2.1e+02 Score=23.36 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 101 NHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 101 ~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
...+..++..|..++..|...|.+
T Consensus 166 ~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 166 HKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666555543
No 404
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=39.93 E-value=1.3e+02 Score=20.96 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 79 QVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 79 kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
+....+...+.|....+....+...|...+..|-.++..|...+..
T Consensus 22 q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~r 67 (70)
T PF04899_consen 22 QQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLER 67 (70)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555566666666666666666666666666666555543
No 405
>PF15058 Speriolin_N: Speriolin N terminus
Probab=39.87 E-value=49 Score=27.60 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 94 LISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 94 i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
.+-|.++...|+.||.+||.++.-++
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLir 32 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLIR 32 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34566777788899999999987664
No 406
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=39.82 E-value=2.4e+02 Score=24.19 Aligned_cols=53 Identities=15% Similarity=0.148 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHh
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESN---------HQIVQENSQLKEKVSSLQLVISDL 125 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~---------~~L~~EN~~Lr~~l~~Lq~~L~d~ 125 (153)
+..++.++..++.+......++...+.++ ......-..|+.++..++..|..+
T Consensus 172 ~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l 233 (362)
T TIGR01010 172 IAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQL 233 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443322 122333344555555555554443
No 407
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=39.73 E-value=1.6e+02 Score=21.96 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=24.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 55 VISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQEN 108 (153)
Q Consensus 55 ~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN 108 (153)
|-.||.+++--+.-...|-..|. .+.++..|..++..+..+......+.
T Consensus 55 msQNRq~~~dr~ra~~D~~inl~-----ae~ei~~l~~~l~~l~~~~~~~~~~~ 103 (108)
T PF06210_consen 55 MSQNRQAARDRLRAELDYQINLK-----AEQEIERLHRKLDALREKLGELLERD 103 (108)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 55678777753333333333332 23344555555555555444444443
No 408
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=39.51 E-value=1.5e+02 Score=24.22 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 63 RRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESN 101 (153)
Q Consensus 63 rrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~ 101 (153)
..-|.+-+.+...|+.+=..|.....-.+.++..|++++
T Consensus 126 ~~E~~ka~~la~qLe~ke~el~~~d~fykeql~~le~k~ 164 (187)
T PF05300_consen 126 EQERQKAKQLARQLEEKEAELKKQDAFYKEQLARLEEKN 164 (187)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555555555544433
No 409
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=39.38 E-value=2.3e+02 Score=23.67 Aligned_cols=53 Identities=21% Similarity=0.223 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 47 INEKRLKRVISNRESARRSRMRKKKLI----EELQAQVNHVQTVNHQLSEKLISLLE 99 (153)
Q Consensus 47 ~e~KR~RR~lkNReSArrSR~RKk~~l----~eLE~kv~~Le~eN~~L~~~i~~L~~ 99 (153)
.--+|.||....+.++-.-+-+=.+.+ ...-.++..|+..|+.|...+.+|..
T Consensus 20 el~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 20 ELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRD 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677777777777755544433322 23334556666666666666666654
No 410
>PHA03011 hypothetical protein; Provisional
Probab=39.35 E-value=1.7e+02 Score=22.30 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 70 KKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVI 122 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L 122 (153)
++.+++|-.+...|-.|.+-+..++..+..-.+.-..|-.-|++++..|...+
T Consensus 63 ~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~ni 115 (120)
T PHA03011 63 IEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENI 115 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 34566677777777777666666666665544444444445555555554443
No 411
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=39.32 E-value=2.8e+02 Score=24.76 Aligned_cols=46 Identities=11% Similarity=0.136 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 79 QVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 79 kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
++..+-.+...+..++..+++++..+..-...+..+|..+...|..
T Consensus 267 qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~ 312 (359)
T PF10498_consen 267 QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQ 312 (359)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4444444444455555555555554444444444444444333333
No 412
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=39.28 E-value=2e+02 Score=22.97 Aligned_cols=47 Identities=19% Similarity=0.225 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 75 ELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLV 121 (153)
Q Consensus 75 eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~ 121 (153)
+++.++..|+.....+...+..|...+..+...-..++.+...|.+.
T Consensus 95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar 141 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAR 141 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555433
No 413
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=39.16 E-value=1.3e+02 Score=24.27 Aligned_cols=17 Identities=6% Similarity=0.303 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQ 89 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~ 89 (153)
+..+|.++..|++-...
T Consensus 38 L~KvEeEI~TLrqvL~a 54 (162)
T PF04201_consen 38 LAKVEEEIQTLRQVLAA 54 (162)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555555444333
No 414
>smart00340 HALZ homeobox associated leucin zipper.
Probab=39.14 E-value=85 Score=20.24 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 75 ELQAQVNHVQTVNHQLSEKLISLL 98 (153)
Q Consensus 75 eLE~kv~~Le~eN~~L~~~i~~L~ 98 (153)
-|..=.+.|..||..|..++.+|+
T Consensus 9 ~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 9 LLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777777777776654
No 415
>PRK10698 phage shock protein PspA; Provisional
Probab=38.99 E-value=2.2e+02 Score=23.44 Aligned_cols=46 Identities=13% Similarity=0.131 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
+..|+.++.........|...+..|+.++..+...-..|..+....
T Consensus 101 ~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A 146 (222)
T PRK10698 101 IATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAA 146 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666667777777777776666666666665444
No 416
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=38.77 E-value=1.4e+02 Score=24.86 Aligned_cols=37 Identities=16% Similarity=0.122 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 82 HVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 82 ~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
..+.+......+...|.++...|..|...|+..+..+
T Consensus 70 ~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 70 VCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 3344444444444455555555555555555555444
No 417
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=38.66 E-value=1.5e+02 Score=21.58 Aligned_cols=36 Identities=25% Similarity=0.224 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 83 VQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQL 120 (153)
Q Consensus 83 Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~ 120 (153)
.-.||-.|..++..|+.-+ ...+...|-+++..|+.
T Consensus 49 ~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~ 84 (86)
T PF12711_consen 49 FAMENIRLREELRRLQSFY--VEGEREMLLQEISELRD 84 (86)
T ss_pred HHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHh
Confidence 3345555555554444333 23344444444444443
No 418
>PF14303 NAM-associated: No apical meristem-associated C-terminal domain
Probab=38.59 E-value=1.6e+02 Score=21.83 Aligned_cols=11 Identities=9% Similarity=0.033 Sum_probs=5.1
Q ss_pred HHHhccCcccc
Q 041582 122 ISDLLAPLRGL 132 (153)
Q Consensus 122 L~d~~~~~~~~ 132 (153)
..-|...+++|
T Consensus 129 ~~IM~~D~s~m 139 (154)
T PF14303_consen 129 NKIMSKDTSGM 139 (154)
T ss_pred HHHHhCCcccC
Confidence 33344455555
No 419
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=38.45 E-value=37 Score=22.28 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLS 91 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~ 91 (153)
-++.+||.+|..|+.-|..|-
T Consensus 18 vrv~eLEeEV~~LrKINrdLf 38 (48)
T PF14077_consen 18 VRVSELEEEVRTLRKINRDLF 38 (48)
T ss_pred eeHHHHHHHHHHHHHHhHHHH
Confidence 356677777777777666553
No 420
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=38.36 E-value=1.5e+02 Score=24.36 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLS 91 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~ 91 (153)
.++.|+.+++.++....+|.
T Consensus 114 ~~~~l~~~i~~~~~~~~~L~ 133 (181)
T KOG3335|consen 114 KVEKLENAIAELTKFFSQLH 133 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 421
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=37.83 E-value=4.8e+02 Score=27.02 Aligned_cols=71 Identities=20% Similarity=0.272 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q 041582 47 INEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLE-----SNHQIVQENSQLKEKVSS 117 (153)
Q Consensus 47 ~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~-----~~~~L~~EN~~Lr~~l~~ 117 (153)
.|....-|=+.||.--.-+.++...|-++.+.+-..|....+.|..=+...+. -...++.|-.+|+..+..
T Consensus 1025 ~d~~~r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~k 1100 (1189)
T KOG1265|consen 1025 SDNAGRVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDK 1100 (1189)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444457788998888999999999999998888888888777665544322 122344455555555443
No 422
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=37.69 E-value=2.7e+02 Score=24.11 Aligned_cols=9 Identities=22% Similarity=0.571 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 041582 76 LQAQVNHVQ 84 (153)
Q Consensus 76 LE~kv~~Le 84 (153)
|+.+++.++
T Consensus 39 l~~~~~~~~ 47 (378)
T TIGR01554 39 LETDVEKLK 47 (378)
T ss_pred HHHHHHHHH
Confidence 333333333
No 423
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=37.59 E-value=1.4e+02 Score=26.63 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 94 LISLLESNHQIVQENSQLKEKVSSLQLVI 122 (153)
Q Consensus 94 i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L 122 (153)
+.=|+.....|+++|+.|-++|..|..+.
T Consensus 314 VKCLENRVAVLENQNKaLIEELKtLKeLY 342 (348)
T KOG3584|consen 314 VKCLENRVAVLENQNKALIEELKTLKELY 342 (348)
T ss_pred HHHHHhHHHHHhcccHHHHHHHHHHHHHh
Confidence 45567777888999999999998887654
No 424
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=37.46 E-value=2.3e+02 Score=23.28 Aligned_cols=52 Identities=21% Similarity=0.301 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISL--LESNHQIVQENSQLKEKVSSLQLVISDL 125 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L--~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~ 125 (153)
-+++.+++.++.+-.+|..-+... .+..-.++.+-..++.++..+..++..+
T Consensus 135 ~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l 188 (262)
T PF14257_consen 135 VDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYL 188 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666665555555443322 1123344555555666666665444333
No 425
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=37.46 E-value=2.4e+02 Score=26.61 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041582 93 KLISLLESNHQIVQENSQLKEK 114 (153)
Q Consensus 93 ~i~~L~~~~~~L~~EN~~Lr~~ 114 (153)
++..++.+...+..+|..|.+.
T Consensus 390 k~~k~~kel~~~~E~n~~l~kn 411 (493)
T KOG0804|consen 390 KLKKCQKELKEEREENKKLIKN 411 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3333344444444444444433
No 426
>PRK04863 mukB cell division protein MukB; Provisional
Probab=37.41 E-value=5.4e+02 Score=27.49 Aligned_cols=13 Identities=8% Similarity=0.151 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q 041582 78 AQVNHVQTVNHQL 90 (153)
Q Consensus 78 ~kv~~Le~eN~~L 90 (153)
.++.........+
T Consensus 362 e~Lee~eeeLeel 374 (1486)
T PRK04863 362 ERLEEQNEVVEEA 374 (1486)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 427
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.35 E-value=4.8e+02 Score=26.90 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISL 97 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L 97 (153)
.+|+.++..|..++..+...+..+
T Consensus 884 ~~le~~L~el~~el~~l~~~~~~~ 907 (1311)
T TIGR00606 884 QQFEEQLVELSTEVQSLIREIKDA 907 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443333
No 428
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=37.22 E-value=1.5e+02 Score=21.47 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 041582 79 QVNHVQTVNHQLSEKLISLLESNH--QIVQENSQLKEKV 115 (153)
Q Consensus 79 kv~~Le~eN~~L~~~i~~L~~~~~--~L~~EN~~Lr~~l 115 (153)
++..++.+|..|..+++.|..+.. ....+|...+.+-
T Consensus 24 k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqkn 62 (87)
T PF10883_consen 24 KVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKN 62 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444443333222 2333455554443
No 429
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=37.19 E-value=2.6e+02 Score=23.90 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041582 97 LLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 97 L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
+.+...-|..-|+.|+++|+.+
T Consensus 233 ~~eei~fLk~tN~qLKaQLegI 254 (259)
T KOG4001|consen 233 MKEEIEFLKETNRQLKAQLEGI 254 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 4456777888888888888654
No 430
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=37.06 E-value=1.5e+02 Score=29.11 Aligned_cols=50 Identities=12% Similarity=0.165 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 70 KKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
.+.+++|..+-..|+.|+..-+.--..|++++..|+.|-+.+++++...+
T Consensus 328 IakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar 377 (832)
T KOG2077|consen 328 IAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDAR 377 (832)
T ss_pred HHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577777777777777777666666677777777777777777765553
No 431
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=37.05 E-value=2.6e+02 Score=24.68 Aligned_cols=18 Identities=11% Similarity=-0.069 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041582 80 VNHVQTVNHQLSEKLISL 97 (153)
Q Consensus 80 v~~Le~eN~~L~~~i~~L 97 (153)
+.+|+.++.++...-..|
T Consensus 93 ~s~Leddlsqt~aikeql 110 (333)
T KOG1853|consen 93 ESQLEDDLSQTHAIKEQL 110 (333)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444433333333
No 432
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=36.79 E-value=3.6e+02 Score=25.24 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 83 VQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 83 Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
+......|..++..|.+++..|.++-..|-..-..|+
T Consensus 142 ~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 142 LTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444
No 433
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=36.69 E-value=3.2e+02 Score=26.92 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 63 RRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 63 rrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
.++..-=+..++..+.++.+++.....+..++..+......+..|+..|+.++..+
T Consensus 565 ~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~ 620 (698)
T KOG0978|consen 565 KQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERL 620 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555666667777777777777777777777777777777777776555
No 434
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=36.62 E-value=2.7e+02 Score=26.04 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=22.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 57 SNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKL 94 (153)
Q Consensus 57 kNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i 94 (153)
++|+=|..|-+-+-..+-+++.+|..++.+...|..-+
T Consensus 399 kt~e~ag~s~Ktl~~~lv~~edeirrlkrdm~klkq~l 436 (486)
T KOG2185|consen 399 KTRENAGPSDKTLGAALVEYEDEIRRLKRDMLKLKQML 436 (486)
T ss_pred hhhhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55665555555444455566666666666666655554
No 435
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=36.48 E-value=1.2e+02 Score=28.51 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 041582 97 LLESNHQIVQENSQLKEKVSSLQLVISDLLAP 128 (153)
Q Consensus 97 L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~ 128 (153)
|..++..|..-....+.++..|+..|..+..|
T Consensus 13 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~p 44 (512)
T TIGR03689 13 LGARNAKLAELLKAARDKLSKLKSQLEQLAQP 44 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33333444444455566666666666666543
No 436
>PRK09343 prefoldin subunit beta; Provisional
Probab=36.44 E-value=1.8e+02 Score=21.70 Aligned_cols=42 Identities=24% Similarity=0.377 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 041582 87 NHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAP 128 (153)
Q Consensus 87 N~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~ 128 (153)
...|..++..+......|+..-..|+.++..++..|..++..
T Consensus 73 ~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 73 EKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666677777777778888888888888888888887754
No 437
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=35.99 E-value=1e+02 Score=21.70 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEK 93 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~ 93 (153)
+..|+.+++.|+.+...+..+
T Consensus 72 ~~~l~~~l~~l~~~~~~~~~~ 92 (104)
T PF13600_consen 72 LKELEEELEALEDELAALQDE 92 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444333333
No 438
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=35.85 E-value=11 Score=27.91 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 041582 103 QIVQENSQLKEKVSSL 118 (153)
Q Consensus 103 ~L~~EN~~Lr~~l~~L 118 (153)
.|..+-..|+.++..|
T Consensus 24 ~l~~el~~L~~~l~eL 39 (118)
T PF08286_consen 24 SLQSELEELKEELEEL 39 (118)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 439
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=35.71 E-value=1.2e+02 Score=22.24 Aligned_cols=18 Identities=33% Similarity=0.228 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041582 102 HQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 102 ~~L~~EN~~Lr~~l~~Lq 119 (153)
..|..||..|+.-+...+
T Consensus 88 ~~L~~E~diLKKa~~~~~ 105 (121)
T PRK09413 88 GKKTMENELLKEAVEYGR 105 (121)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344455666666555443
No 440
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=35.62 E-value=2.1e+02 Score=22.28 Aligned_cols=56 Identities=11% Similarity=0.165 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCcccccccCCCCCCcccc
Q 041582 83 VQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL--APLRGLEEVNGNMNRPRAE 145 (153)
Q Consensus 83 Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~--~~~~~~~~~~~n~~~~~~~ 145 (153)
++.+...+..++..|+.......+. +..|..-|.+.. ..+.-++.+.|++...+..
T Consensus 52 ~ea~~e~~k~E~krL~~rkk~~e~~-------~~~Lk~yL~~~m~~~g~~ki~t~~~tisirk~~ 109 (162)
T PF05565_consen 52 LEADIEAIKAEIKRLQERKKSIENR-------IDRLKEYLLDAMEAAGIKKIKTPLFTISIRKNP 109 (162)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcCCceeecCceEEEEecCC
Confidence 3333334444444444444444444 444443333333 1344455566665554443
No 441
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=35.62 E-value=5.3e+02 Score=26.89 Aligned_cols=53 Identities=17% Similarity=0.287 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
.+|+.+++.+...+.+-......-+..+..|.-|-.+|..++..+..+|..+.
T Consensus 790 kdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~ 842 (1174)
T KOG0933|consen 790 KDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLE 842 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333333333333444444444444444444444444433
No 442
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=35.50 E-value=5.3e+02 Score=26.90 Aligned_cols=67 Identities=19% Similarity=0.158 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 60 ESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 60 eSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
..-..+.+|......+|...+..+......+...+..|+..+-.+..+-..+..+|.....+|.|+-
T Consensus 412 k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das 478 (1141)
T KOG0018|consen 412 KQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDAS 478 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhh
Confidence 3344566666677777777777777777777777777777766666666666666666655555544
No 443
>COG4420 Predicted membrane protein [Function unknown]
Probab=35.40 E-value=1.3e+02 Score=25.00 Aligned_cols=65 Identities=22% Similarity=0.211 Sum_probs=30.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 55 VISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 55 ~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
|-.||.+++---.-+..|--.|.. +.+...|..++..|......+..|+..|++.+..+...+.+
T Consensus 109 mSQNRQa~rDr~~a~~d~qvnlka-----E~e~~~l~~kLd~lr~~lg~~~~~l~~lre~l~~i~~~~~~ 173 (191)
T COG4420 109 MSQNRQAERDRLRAELDYQVNLKA-----EQEVAALHEKLDELRLDLGYVRDELDDLRELLAEIEPELAD 173 (191)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcchhhhchHHHHHHHHHhCccccc
Confidence 456666554322222233222222 33444566666655555444455555555555555444333
No 444
>PRK15396 murein lipoprotein; Provisional
Probab=35.33 E-value=1.6e+02 Score=20.86 Aligned_cols=22 Identities=14% Similarity=0.359 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKL 94 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i 94 (153)
+..|..++..+..+...++..+
T Consensus 34 V~~L~~kvdql~~dv~~~~~~~ 55 (78)
T PRK15396 34 VQTLNAKVDQLSNDVNAMRSDV 55 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 445
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=35.16 E-value=3.1e+02 Score=25.61 Aligned_cols=50 Identities=16% Similarity=0.257 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 68 RKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSS 117 (153)
Q Consensus 68 RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~ 117 (153)
.|+...+.+...+..++.....+..++..+..+...|...-+.|+..++.
T Consensus 443 qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 443 QKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34555566777777777777777777777777777777777777766644
No 446
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=35.14 E-value=2.3e+02 Score=22.61 Aligned_cols=70 Identities=24% Similarity=0.286 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 041582 59 RESARRSRMRKKKLIEELQAQVNH-VQT-------VNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAP 128 (153)
Q Consensus 59 ReSArrSR~RKk~~l~eLE~kv~~-Le~-------eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~ 128 (153)
=..+=+-|.+|+-..+.+..+++. +.. ++..|..--..|.........-|..|+.+|-.|-+.....+.|
T Consensus 112 i~k~IkKR~~k~lDyd~~~~k~~k~~~~k~~~~~kd~~kl~kae~~l~~a~~~y~~lN~~Lk~eLP~l~~~~~~~~~~ 189 (216)
T cd07599 112 IRKTIKKRDHKKLDYDKLQNKLNKLLQKKKELSLKDEKQLAKLERKLEEAKEEYEALNELLKSELPKLLALADEFLPP 189 (216)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 334445567777777888888877 432 3455666566677777777888889999998877666666654
No 447
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=35.14 E-value=1.6e+02 Score=25.47 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISL 97 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L 97 (153)
.+.|+.++..|+.+|..|..++..+
T Consensus 34 ~~~l~~~~~~lr~e~~~l~~~~~~~ 58 (308)
T PF11382_consen 34 IDSLEDQFDSLREENDELRAELDAL 58 (308)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666555555443
No 448
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=34.97 E-value=2.6e+02 Score=23.10 Aligned_cols=64 Identities=19% Similarity=0.292 Sum_probs=42.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 54 RVISNRESARRSRMRKKKLIEELQA--------------QVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 54 R~lkNReSArrSR~RKk~~l~eLE~--------------kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
+.+.+-..|..+|-|+. +.+|+. =+.-|+.|...|...+..=..+...++.|+..+...+..=.
T Consensus 98 ~Rm~~qL~~aE~rhrr~--i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l~eE~ 175 (192)
T PF09727_consen 98 RRMLEQLAAAEKRHRRT--IQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQLEEER 175 (192)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555556665553 233332 35668888889998888878888888888887777665443
No 449
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=34.94 E-value=2.1e+02 Score=25.57 Aligned_cols=48 Identities=23% Similarity=0.163 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 79 QVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 79 kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
+|--|+.++.+|..++..++.+++.+...-.--.++-.-|+.+|.|+-
T Consensus 176 ~v~LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLddan 223 (323)
T PF08537_consen 176 RVILLQKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDDAN 223 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 444455555555555555554444444444444444455555555554
No 450
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=34.92 E-value=1.2e+02 Score=26.23 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 89 QLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 89 ~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
.|..++..++.+...+..|...+++++..++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (364)
T TIGR01242 10 KLEDEKRSLEKEKIRLERELERLRSEIERLR 40 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333344444444555554443
No 451
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=34.87 E-value=1.9e+02 Score=21.46 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 70 KKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSS 117 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~ 117 (153)
...+..+..+++.++.++..|..+...|..+...|..+-..+.++...
T Consensus 49 ~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e~AR~ 96 (117)
T COG2919 49 AADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDGRDYIEERARS 96 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
No 452
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=34.84 E-value=1.5e+02 Score=20.40 Aligned_cols=30 Identities=17% Similarity=0.307 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNH 102 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~ 102 (153)
++.+...+..+...-..|...+..+.....
T Consensus 16 l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~ 45 (92)
T PF14712_consen 16 LDRLDQQLQELRQSQEELLQQIDRLNEKLK 45 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554444433
No 453
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=34.83 E-value=2.7e+02 Score=24.59 Aligned_cols=17 Identities=29% Similarity=0.581 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041582 67 MRKKKLIEELQAQVNHV 83 (153)
Q Consensus 67 ~RKk~~l~eLE~kv~~L 83 (153)
.+|+.++..|...+..+
T Consensus 125 ~~k~~~L~~l~~~L~~l 141 (355)
T PF09766_consen 125 KKKKKFLDSLPPQLKSL 141 (355)
T ss_pred HHHHHHHHHhHHHHHHH
Confidence 33333333333333333
No 454
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=34.83 E-value=1.4e+02 Score=22.46 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041582 78 AQVNHVQTVNHQLSEKLISLLE 99 (153)
Q Consensus 78 ~kv~~Le~eN~~L~~~i~~L~~ 99 (153)
++|..|......+..+|..|+.
T Consensus 53 eqI~kL~e~V~~QGEqIkel~~ 74 (102)
T PF01519_consen 53 EQINKLTEKVDKQGEQIKELQV 74 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 455
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=34.49 E-value=2e+02 Score=21.65 Aligned_cols=24 Identities=8% Similarity=0.178 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISL 97 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L 97 (153)
..|+.+++..+.+....+.++..-
T Consensus 28 ~~l~~eL~~~k~el~~yk~~V~~H 51 (128)
T PF06295_consen 28 AKLEQELEQAKQELEQYKQEVNDH 51 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666655555555443
No 456
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=34.48 E-value=1.3e+02 Score=28.20 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 83 VQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 83 Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
|+.++..|..++..|.+.+.....+-..|++++..|.
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 42 (512)
T TIGR03689 6 LQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLA 42 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444555555555666666777777664
No 457
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=34.04 E-value=50 Score=29.41 Aligned_cols=67 Identities=24% Similarity=0.299 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCC
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLEEVNGN 138 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~~~~~n 138 (153)
-+.+|+..|..|..........|..|+.....+..+-.-|+.-+..+.-.+.++..++..||.+.+.
T Consensus 92 Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~~s~ 158 (326)
T PF04582_consen 92 SLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESGSSS 158 (326)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcCCCC
Confidence 3456666666666666666666777788888888888888888888888888888888888888765
No 458
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=34.04 E-value=2e+02 Score=22.19 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041582 94 LISLLESNHQIVQENSQLKEKV 115 (153)
Q Consensus 94 i~~L~~~~~~L~~EN~~Lr~~l 115 (153)
|..|..+...|..||..|++++
T Consensus 98 i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 98 IFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHHHhHHHHHHHHHHHh
Confidence 3344444444555555555443
No 459
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=33.88 E-value=5.5e+02 Score=26.49 Aligned_cols=26 Identities=12% Similarity=0.155 Sum_probs=15.6
Q ss_pred ccchhHHHHHHHHHhHHHHHHHHHHH
Q 041582 44 ASIINEKRLKRVISNRESARRSRMRK 69 (153)
Q Consensus 44 ~~~~e~KR~RR~lkNReSArrSR~RK 69 (153)
+.....+++-|++.|+-.-+.+-.-+
T Consensus 99 ddlk~~~sQiriLQn~c~~lE~ekq~ 124 (1265)
T KOG0976|consen 99 DDLKHHESQIRILQNKCLRLEMEKQK 124 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556667777777666555444
No 460
>PRK14143 heat shock protein GrpE; Provisional
Probab=33.87 E-value=2.5e+02 Score=23.75 Aligned_cols=8 Identities=13% Similarity=0.497 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 041582 76 LQAQVNHV 83 (153)
Q Consensus 76 LE~kv~~L 83 (153)
|+.++..|
T Consensus 79 l~~e~~el 86 (238)
T PRK14143 79 LKQELEEL 86 (238)
T ss_pred HHHHHHHH
Confidence 33333333
No 461
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=33.82 E-value=1.3e+02 Score=23.54 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSE-----KLISLLESNHQIVQENSQLKEKV 115 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~-----~i~~L~~~~~~L~~EN~~Lr~~l 115 (153)
.+|..++.++..|...+.. +-..++++.+.++.|...+.+.+
T Consensus 43 ~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~ 89 (161)
T PF04420_consen 43 RQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSL 89 (161)
T ss_dssp HHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443321 22344555555555555555544
No 462
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=33.68 E-value=1.6e+02 Score=20.32 Aligned_cols=43 Identities=14% Similarity=0.290 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 76 LQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 76 LE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
|..+++.|...|..|...++....+...|......-...+.+|
T Consensus 3 L~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~al 45 (67)
T PF10506_consen 3 LKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATAL 45 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 5566666777777776666666666555554444444333333
No 463
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=33.49 E-value=3.5e+02 Score=24.17 Aligned_cols=31 Identities=26% Similarity=0.250 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc--cCccccccc
Q 041582 105 VQENSQLKEKVSSLQLVISDLL--APLRGLEEV 135 (153)
Q Consensus 105 ~~EN~~Lr~~l~~Lq~~L~d~~--~~~~~~~~~ 135 (153)
..+-..+++++..++..|.... .|+.|....
T Consensus 297 ~~~l~~~~~~l~~a~~~l~~~~I~AP~dG~V~~ 329 (457)
T TIGR01000 297 NQKLLELESKIKSLKEDSQKGVIKAPEDGVLHL 329 (457)
T ss_pred HHHHHHHHHHHHHHHHHHhCCEEECCCCeEEEe
Confidence 3333334444444444443333 698888763
No 464
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=33.46 E-value=4.9e+02 Score=25.85 Aligned_cols=51 Identities=20% Similarity=0.175 Sum_probs=30.5
Q ss_pred HHHHHHHhHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 51 RLKRVISNRESAR-------------RSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESN 101 (153)
Q Consensus 51 R~RR~lkNReSAr-------------rSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~ 101 (153)
.+=|-.+||..|. ++|.+-...+..|......|+.+...-...+..+..+.
T Consensus 481 qqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL 544 (739)
T PF07111_consen 481 QQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQL 544 (739)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677777776 56666666666666666666666555555444444433
No 465
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=33.26 E-value=4e+02 Score=25.09 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 69 KKKLIEELQAQVN--------------HVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 69 Kk~~l~eLE~kv~--------------~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
|++|-++|+.+++ +...+.+.+..++..|.++|...--||..|...+.+-+..|..
T Consensus 391 KnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRq 460 (593)
T KOG4807|consen 391 KNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQ 460 (593)
T ss_pred HHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 466
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=32.92 E-value=3.7e+02 Score=26.26 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
.+++.++..|..+-..-..++..+++....+......|.++++.+
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a 605 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEA 605 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666555555555555555555555555555444
No 467
>PRK01156 chromosome segregation protein; Provisional
Probab=32.89 E-value=4.7e+02 Score=25.40 Aligned_cols=46 Identities=15% Similarity=0.078 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccccccCCC
Q 041582 93 KLISLLESNHQIVQENSQLKEKVSSLQLVISDL-LAPLRGLEEVNGN 138 (153)
Q Consensus 93 ~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~-~~~~~~~~~~~~n 138 (153)
++..+......|..+-..|+..+..|...+..+ .+|.|...+.+..
T Consensus 417 ~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~l~~~~~Cp~c~~~~~ 463 (895)
T PRK01156 417 KLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLG 463 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcCC
Confidence 334444444444444455555555555433322 2577777666655
No 468
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=32.89 E-value=87 Score=21.69 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKL 94 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i 94 (153)
+.+|+.++.-|+.|...|..++
T Consensus 27 V~El~eRIalLq~EIeRlkAe~ 48 (65)
T COG5509 27 VAELEERIALLQAEIERLKAEL 48 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666554
No 469
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=32.86 E-value=41 Score=31.53 Aligned_cols=15 Identities=27% Similarity=0.481 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVN 87 (153)
Q Consensus 73 l~eLE~kv~~Le~eN 87 (153)
+++|++++++|+++.
T Consensus 33 ie~L~kql~~Lk~q~ 47 (489)
T PF11853_consen 33 IEALKKQLEELKAQQ 47 (489)
T ss_pred HHHHHHHHHHHHHhh
Confidence 333333333333333
No 470
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=32.66 E-value=3.3e+02 Score=23.64 Aligned_cols=58 Identities=29% Similarity=0.364 Sum_probs=27.4
Q ss_pred HHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 54 RVISNRESARR-SRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVS 116 (153)
Q Consensus 54 R~lkNReSArr-SR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~ 116 (153)
.-++|+|..-. +|.+|..-.+++ ..|+.... -..++..|+.++..+++++-...++|.
T Consensus 131 K~IR~~E~sl~p~R~~r~~l~d~I----~kLk~k~P-~s~kl~~LeqELvraEae~lvaEAqL~ 189 (271)
T PF13805_consen 131 KSIRNREESLQPSRDRRRKLQDEI----AKLKYKDP-QSPKLVVLEQELVRAEAENLVAEAQLS 189 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-T-TTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHhHHHHHHH----HHHHhcCC-CChHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 56778876644 444444322222 23332211 123455555555555555555444443
No 471
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.60 E-value=1.7e+02 Score=24.57 Aligned_cols=50 Identities=18% Similarity=0.348 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 69 KKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 69 Kk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
|++.++-+|.++..|+.-...+..++.-|+.+-..+...|..--.++.-+
T Consensus 132 Kkeklep~E~elrrLed~~~sI~~e~~YLr~REeemr~~nesTNsrv~~f 181 (210)
T KOG1691|consen 132 KKEKLEPLEVELRRLEDLVESIHEEMYYLREREEEMRNTNESTNSRVAWF 181 (210)
T ss_pred hhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 78899999999999999999999999999999899999988888777655
No 472
>PRK11519 tyrosine kinase; Provisional
Probab=32.51 E-value=4.3e+02 Score=25.32 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISL 97 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L 97 (153)
+.|+.++..++.+.......+...
T Consensus 270 ~fL~~ql~~l~~~L~~aE~~l~~f 293 (719)
T PRK11519 270 AFLAQQLPEVRSRLDVAENKLNAF 293 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444333
No 473
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=32.48 E-value=4.3e+02 Score=25.93 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=14.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 51 RLKRVISNRESARRSRMRKKKLIEELQAQVNHVQ 84 (153)
Q Consensus 51 R~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le 84 (153)
+.-+++..-+.-++.=+.+++.++.+..+++.+.
T Consensus 517 ~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~ 550 (782)
T PRK00409 517 KLNELIASLEELERELEQKAEEAEALLKEAEKLK 550 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443333333
No 474
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=32.47 E-value=1.8e+02 Score=20.41 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 76 LQAQVNHVQTVNHQLSEKLISLLESNHQIVQEN 108 (153)
Q Consensus 76 LE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN 108 (153)
|...|..|..|+..|..++...++++..+..+.
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~ 33 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666667777777777666666655544443
No 475
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=32.42 E-value=1.8e+02 Score=20.59 Aligned_cols=52 Identities=21% Similarity=0.251 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLIS---LLESNHQIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~---L~~~~~~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
-+..+..+|..|+.....|...+.. |..+..++.+.-..|..++...+..|.
T Consensus 12 dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL~ 66 (75)
T PF05531_consen 12 DIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDILN 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4556667777777666666665433 444444444444444444554444443
No 476
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=32.36 E-value=2.4e+02 Score=21.88 Aligned_cols=43 Identities=16% Similarity=0.245 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEK 114 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~ 114 (153)
.+...|..++.|+.+...=-.+|..|+++...+...|..|..+
T Consensus 88 li~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 88 LIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4455566666666666666667777777777777888777654
No 477
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.95 E-value=4e+02 Score=24.27 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 82 HVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSS 117 (153)
Q Consensus 82 ~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~ 117 (153)
.|..--++|....+.|+++.+.|...-..|+.+...
T Consensus 243 eL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 243 ELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 333333444444555555555555555555555544
No 478
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=31.85 E-value=1.5e+02 Score=28.49 Aligned_cols=57 Identities=18% Similarity=0.307 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLA 127 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~ 127 (153)
..+.++...+.-|+.+...|..+...+.+.++.+.+-|..|..+...+-.+|..++.
T Consensus 445 ~~m~e~~s~~~~le~eq~~l~~ey~~~~e~~~e~k~~~~~L~~~~~~~~~llgqi~~ 501 (707)
T KOG0957|consen 445 SFMQERDSQIIPLEEEQLRLSREYLAETEANQEKKSSQKHLVERFSANEELLGQILT 501 (707)
T ss_pred HHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHhhhh
Confidence 345566666777777777788887777788888888888888888888777777663
No 479
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=31.79 E-value=3e+02 Score=22.87 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCcccc
Q 041582 70 KKLIEELQAQVNHVQTVNHQLSEKLISLLESNH--QIVQENSQLKEKVSSLQLVISDLLAPLRGL 132 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~--~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~ 132 (153)
...+..|+.++..|......+..+|..|...+. .+..+-..|+.++...+..|..+...+..+
T Consensus 85 d~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~v 149 (201)
T KOG4603|consen 85 DGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHV 149 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
No 480
>PF07767 Nop53: Nop53 (60S ribosomal biogenesis); InterPro: IPR011687 This entry contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. This protein has been found to interact with herpes simplex type 1 regulatory proteins, but its exact role in the life cycle of the virus is not known [].
Probab=31.77 E-value=2.8e+02 Score=24.43 Aligned_cols=112 Identities=15% Similarity=0.203 Sum_probs=0.0
Q ss_pred CCccccc-CCccchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 35 ALDEARE-TPASIINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKE 113 (153)
Q Consensus 35 ~~~~~~~-~~~~~~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~ 113 (153)
..+...+ ........+|.-+..+||+..++-..+.......+..++.++ .....|..+|.............-..-..
T Consensus 260 ~~~~~~~~~~~~~~~~kkKTk~qRnK~~r~k~~~~~~~~~k~~k~~~~~i-~~l~~i~~ei~~~e~~~~~~~~~r~~~~~ 338 (387)
T PF07767_consen 260 GDEGEYELSINKPKKNKKKTKAQRNKEKRRKEEERKEKERKKEKKKIKQI-DRLKEIAKEIEKEEEEREKRRERRKRKKE 338 (387)
T ss_pred ccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred HHHHHHHHHHHhc---cCcccc--cccCCCCCCcccccc
Q 041582 114 KVSSLQLVISDLL---APLRGL--EEVNGNMNRPRAEAS 147 (153)
Q Consensus 114 ~l~~Lq~~L~d~~---~~~~~~--~~~~~n~~~~~~~~~ 147 (153)
....-...|+.+. .|+-+. ++..+|+-.++|+.+
T Consensus 339 ~~~~~~~rlgk~~~~~~~~eV~L~dEL~gSLR~Lkpegn 377 (387)
T PF07767_consen 339 KKKLKPKRLGKHKFPEPPLEVQLSDELSGSLRTLKPEGN 377 (387)
T ss_pred hhhccccccCccCCCCCCCCccChhhhhhhHhhcCCCCC
No 481
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=31.65 E-value=2.7e+02 Score=22.35 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 50 KRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQL 120 (153)
Q Consensus 50 KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~ 120 (153)
.....+...-......-.+....+.+|+.++..+......= .+-..+.+.+..|..++..|+.++..+..
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~ 131 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSE 131 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 482
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=31.65 E-value=2.4e+02 Score=21.61 Aligned_cols=54 Identities=11% Similarity=0.018 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
.....||.++.........|..++...+..+..-...-..|+..+..+...+.+
T Consensus 27 ~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~ 80 (160)
T PF13094_consen 27 DRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREE 80 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=31.57 E-value=4.3e+02 Score=24.62 Aligned_cols=78 Identities=15% Similarity=0.249 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 47 INEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 47 ~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
.+-++.|.-+..+.-.++.+..+++ ..|..+.+.|......|..+-..|..+-..|......|......+........
T Consensus 58 eE~~~~R~Ele~el~~~e~rL~qrE--~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~ 135 (514)
T TIGR03319 58 EEVHKLRAELERELKERRNELQRLE--RRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQR 135 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>PRK14140 heat shock protein GrpE; Provisional
Probab=31.54 E-value=2.9e+02 Score=22.61 Aligned_cols=63 Identities=24% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhccCccccc
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL--QLVISDLLAPLRGLE 133 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L--q~~L~d~~~~~~~~~ 133 (153)
..+++|+.++..++.+...|..++..+...+.-+..-...=+..+... ...+.++++.+-.|+
T Consensus 37 ~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnLe 101 (191)
T PRK14140 37 ELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNFE 101 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=31.53 E-value=1.4e+02 Score=25.68 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLK 112 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr 112 (153)
+..|+.+++.|+.+...+..+...++.+...+..+...++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (364)
T TIGR01242 1 ISELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLR 40 (364)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 486
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=31.45 E-value=1.8e+02 Score=24.89 Aligned_cols=41 Identities=22% Similarity=0.359 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 78 AQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVI 122 (153)
Q Consensus 78 ~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L 122 (153)
.....+..+|+.|+.++..+. .+..+...|+++-..|+..|
T Consensus 66 ~~~~~~~~en~~Lk~~l~~~~----~~~~~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 66 KSLKDLALENEELKKELAELE----QLLEEVESLEEENKRLKELL 106 (284)
T ss_pred HHhHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
No 487
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=31.34 E-value=1.3e+02 Score=20.47 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 041582 70 KKLIEELQAQVNHVQTVNHQ----LSEKLISLLESNHQI 104 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~----L~~~i~~L~~~~~~L 104 (153)
..++..++.-+..|+.+-.. |..+|..|+.++..|
T Consensus 2 ~~qv~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL 40 (60)
T PF14916_consen 2 EQQVQSLEKSILFLQQEHAQTLKGLHAEIERLQKRNKDL 40 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
No 488
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.33 E-value=2.2e+02 Score=24.55 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCCC
Q 041582 80 VNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLEEVNGNMN 140 (153)
Q Consensus 80 v~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~~~~~n~~ 140 (153)
+.+|+.+...|..+|..|+. +..+..+|.....++......+..+.........+.+...
T Consensus 58 ~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~qe~~~~~~~~~~~g~~a~~~~~~~~~ 117 (262)
T COG1729 58 LTQLEQQLRQLQGKIEELRG-IQELQYQNNQNVERQEENEARLDSLESGRQALAQGIGDQS 117 (262)
T ss_pred cHHHHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHhhhhhhccccccccccccccc
No 489
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=31.21 E-value=3.9e+02 Score=24.02 Aligned_cols=70 Identities=19% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 041582 60 ESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEK----LISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPL 129 (153)
Q Consensus 60 eSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~----i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~ 129 (153)
.+.-..|..-+..+++|..+.+.+..+...+... .+.+..+...+..+-..|.+++..+...+.+.+.-+
T Consensus 33 ~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 33 IALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 490
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=31.07 E-value=2.5e+02 Score=27.41 Aligned_cols=82 Identities=15% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCCCCccccccc
Q 041582 69 KKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLEEVNGNMNRPRAEASS 148 (153)
Q Consensus 69 Kk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~~~~~n~~~~~~~~~~ 148 (153)
+..-+.+|+..|....++..+-...+..+..+...+..+-..|..++..++..+-...++--.|..++-=.....+.+++
T Consensus 22 ~~~~v~~l~~~v~~kd~elr~rqt~~~~l~~~~~~~~~~i~~ltnel~k~r~~~p~~~~~~~~l~p~tpl~~~~~~s~~~ 101 (732)
T KOG0614|consen 22 LQNLVPQLEEAVQRKDAELRQRQTILEELIKEISKLEGEIAKLTNELDKLRSVLPQKAQSAASLGPGTPLASPRSASPGN 101 (732)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcCCcccccCccccCCCCCCCCCcccCchh
Q ss_pred cc
Q 041582 149 LS 150 (153)
Q Consensus 149 ~~ 150 (153)
..
T Consensus 102 ~~ 103 (732)
T KOG0614|consen 102 DT 103 (732)
T ss_pred hh
No 491
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=31.02 E-value=3.7e+02 Score=23.59 Aligned_cols=64 Identities=17% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc
Q 041582 68 RKKKLIEELQAQVNHVQTVNHQLSEK--------LISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRG 131 (153)
Q Consensus 68 RKk~~l~eLE~kv~~Le~eN~~L~~~--------i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~ 131 (153)
.....+..+..++.++.-|.+-|... ...|.++++.|..=|..|..=+..=......+..|+|+
T Consensus 51 s~L~QIt~iQaeI~q~nlEielLkleKeTADltH~~~L~~K~~~Lq~m~shLe~VLk~K~~Lr~RLqkP~~q 122 (277)
T PF15003_consen 51 SRLRQITNIQAEIDQLNLEIELLKLEKETADLTHPDYLAEKCEALQSMNSHLEAVLKEKDRLRQRLQKPYCQ 122 (277)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhcchHhhhCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhh
No 492
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=30.74 E-value=3e+02 Score=22.54 Aligned_cols=82 Identities=17% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 041582 51 RLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLR 130 (153)
Q Consensus 51 R~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~ 130 (153)
..+.+...-+-+-.--..-...+..|..++...+.........+..|+.....|..+-...+.+...++.-|-..+.-|.
T Consensus 156 ~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el~ 235 (237)
T PF00261_consen 156 NLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNELN 235 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred cc
Q 041582 131 GL 132 (153)
Q Consensus 131 ~~ 132 (153)
.|
T Consensus 236 ~~ 237 (237)
T PF00261_consen 236 EM 237 (237)
T ss_dssp T-
T ss_pred CC
No 493
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=30.72 E-value=2.1e+02 Score=20.60 Aligned_cols=47 Identities=13% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSS 117 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~ 117 (153)
+.+++|-..|.+|-....+|...+..+..+.+....|+.+-.+++..
T Consensus 25 aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn 71 (78)
T COG4238 25 AKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDN 71 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
No 494
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=30.60 E-value=1.5e+02 Score=21.66 Aligned_cols=36 Identities=11% Similarity=-0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQEN 108 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN 108 (153)
+..++.++..|+.++..|..++..|.....-....|
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKKa~~~~~~~~ 108 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKK 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
No 495
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=30.60 E-value=1.6e+02 Score=27.70 Aligned_cols=58 Identities=19% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 67 MRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 67 ~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
+|+.+..++||.-..+|+.-.......+...+.+...|..--..|.++|..|+.+|.|
T Consensus 156 ErrrQEaeELEgyCsqLk~nCrkVt~SVedaEiKtnvLkqnS~~LEekLr~lq~qLqd 213 (558)
T PF15358_consen 156 ERRRQEAEELEGYCSQLKENCRKVTRSVEDAEIKTNVLKQNSALLEEKLRYLQQQLQD 213 (558)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccchHHHHHHHHHHHHHhcc
No 496
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=30.49 E-value=2.1e+02 Score=20.73 Aligned_cols=44 Identities=14% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 79 QVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVI 122 (153)
Q Consensus 79 kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L 122 (153)
+|+.|..+.+.|..++..+....+.+...-..-+++...-..+|
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~Ri 68 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRL 68 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 497
>PRK00106 hypothetical protein; Provisional
Probab=30.19 E-value=4.8e+02 Score=24.71 Aligned_cols=77 Identities=12% Similarity=0.133 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582 47 INEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDL 125 (153)
Q Consensus 47 ~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~ 125 (153)
.+-.+.-+..++|...+..|..++. +.|+.+...|......|..+...|..+...|......+..........|..+
T Consensus 86 ~ElEkel~eEr~rL~qrE~rL~qRE--E~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~ 162 (535)
T PRK00106 86 EEIEQEFKSERQELKQIESRLTERA--TSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERV 162 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=30.14 E-value=3.4e+02 Score=23.43 Aligned_cols=46 Identities=26% Similarity=0.369 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 66 RMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVI 122 (153)
Q Consensus 66 R~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L 122 (153)
..||.+-++-|..++..|+.+...|..++. .|..|-.++..+-..+
T Consensus 88 ~~Kk~eLi~~l~~kl~~L~~eqe~l~ee~~-----------~n~~lG~~ve~~v~~~ 133 (264)
T PF08687_consen 88 NAKKVELIESLSKKLEVLQEEQEALQEEIQ-----------ANEALGAEVEALVQEV 133 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
No 499
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=30.14 E-value=2.7e+02 Score=21.76 Aligned_cols=54 Identities=9% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 73 IEELQAQVNHVQT-VNHQLSEKLISLLE--------SNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 73 l~eLE~kv~~Le~-eN~~L~~~i~~L~~--------~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
++.|+.+++.|.. +...+...+..... .|+....+-..|..++..|...|..+.
T Consensus 12 ~~~L~~EL~~L~~~~r~e~~~~i~~Ar~~GDl~ENaeY~aAk~~~~~~e~rI~~L~~~L~~A~ 74 (157)
T PRK01885 12 YARLKQELDYLWREERPEVTQKVSWAASLGDRSENADYIYGKKRLREIDRRVRFLTKRLENLK 74 (157)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCcchhhcHHHHHHHHHHHHHHHHHHHHHHccCE
No 500
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=30.13 E-value=1.9e+02 Score=20.32 Aligned_cols=34 Identities=12% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQI 104 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L 104 (153)
..+..|+.+++.|+.+...+..++..+..+..-|
T Consensus 70 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 70 PELKELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Done!