Query 041582
Match_columns 153
No_of_seqs 130 out of 790
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 14:34:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041582.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041582hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.6 4E-15 1.4E-19 98.3 6.3 51 50-100 1-51 (55)
2 2wt7_A Proto-oncogene protein 99.4 9.2E-13 3.2E-17 88.6 9.1 56 49-104 1-56 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.4 2.5E-12 8.6E-17 85.7 8.9 55 50-104 1-55 (61)
4 1jnm_A Proto-oncogene C-JUN; B 99.3 6.9E-12 2.4E-16 83.9 7.5 53 50-102 1-53 (62)
5 2dgc_A Protein (GCN4); basic d 99.3 8.1E-12 2.8E-16 84.4 6.8 54 48-101 7-60 (63)
6 1gd2_E Transcription factor PA 99.1 1.4E-10 4.7E-15 80.1 6.4 62 51-112 9-70 (70)
7 1ci6_A Transcription factor AT 99.1 3.4E-10 1.2E-14 76.2 7.4 51 50-100 2-52 (63)
8 1hjb_A Ccaat/enhancer binding 98.7 1.5E-07 5.1E-12 67.3 9.9 54 44-97 9-62 (87)
9 1gu4_A CAAT/enhancer binding p 98.7 1.6E-07 5.4E-12 65.9 9.7 56 45-100 10-65 (78)
10 2wt7_B Transcription factor MA 98.3 6.4E-06 2.2E-10 59.2 9.8 53 46-98 23-75 (90)
11 3a5t_A Transcription factor MA 98.3 1.7E-08 5.8E-13 74.7 -4.0 51 46-96 33-83 (107)
12 2oqq_A Transcription factor HY 97.6 0.00024 8.3E-09 44.4 6.4 39 70-115 2-40 (42)
13 2jee_A YIIU; FTSZ, septum, coi 96.9 0.0064 2.2E-07 42.8 8.3 56 74-129 23-78 (81)
14 1skn_P DNA-binding domain of S 96.6 0.00089 3.1E-08 48.1 2.2 33 46-78 58-90 (92)
15 2w6a_A ARF GTPase-activating p 95.8 0.054 1.8E-06 36.2 7.4 41 73-113 22-62 (63)
16 2jee_A YIIU; FTSZ, septum, coi 95.5 0.072 2.5E-06 37.4 7.6 48 71-118 6-53 (81)
17 3hnw_A Uncharacterized protein 95.4 0.15 5.1E-06 38.5 9.9 59 68-126 72-130 (138)
18 1deb_A APC protein, adenomatou 95.0 0.2 7E-06 32.4 7.9 48 73-120 5-52 (54)
19 3cve_A Homer protein homolog 1 94.1 0.17 5.9E-06 34.7 6.4 58 74-131 3-60 (72)
20 3s9g_A Protein hexim1; cyclin 93.7 0.36 1.2E-05 35.2 7.9 45 74-118 40-91 (104)
21 3he5_A Synzip1; heterodimeric 93.5 0.41 1.4E-05 30.0 6.8 44 72-115 4-47 (49)
22 3cvf_A Homer-3, homer protein 93.4 0.11 3.8E-06 36.2 4.6 57 74-130 9-65 (79)
23 3m48_A General control protein 93.4 0.1 3.5E-06 30.9 3.7 26 73-98 2-27 (33)
24 2oxj_A Hybrid alpha/beta pepti 93.0 0.15 5.2E-06 30.3 4.1 27 72-98 2-28 (34)
25 1kd8_B GABH BLL, GCN4 acid bas 92.8 0.23 8E-06 29.8 4.8 28 72-99 2-29 (36)
26 3hnw_A Uncharacterized protein 92.6 1.9 6.3E-05 32.4 10.8 58 68-125 79-136 (138)
27 2w83_C C-JUN-amino-terminal ki 92.4 1 3.6E-05 31.2 8.4 63 74-136 5-74 (77)
28 3vmx_A Voltage-gated hydrogen 92.2 0.85 2.9E-05 29.1 7.1 38 77-114 3-40 (48)
29 1kd8_A GABH AIV, GCN4 acid bas 91.7 0.25 8.7E-06 29.7 4.0 28 72-99 2-29 (36)
30 2c9l_Y EB1, zebra, BZLF1 trans 91.7 1.3 4.5E-05 29.2 7.8 25 53-77 4-28 (63)
31 3c3f_A Alpha/beta peptide with 91.6 0.29 1E-05 29.1 4.1 27 72-98 2-28 (34)
32 1go4_E MAD1 (mitotic arrest de 91.3 1.6 5.6E-05 31.5 8.8 29 72-100 13-41 (100)
33 3a2a_A Voltage-gated hydrogen 91.0 0.78 2.7E-05 30.1 6.1 37 77-113 10-46 (58)
34 2eqb_B RAB guanine nucleotide 90.9 2.7 9.1E-05 30.3 9.4 46 74-119 15-60 (97)
35 3c3g_A Alpha/beta peptide with 90.5 0.42 1.4E-05 28.2 4.1 26 73-98 2-27 (33)
36 3efg_A Protein SLYX homolog; x 90.5 0.92 3.1E-05 31.1 6.5 49 71-119 14-62 (78)
37 3m91_A Proteasome-associated A 90.5 1.7 5.7E-05 27.8 7.2 37 82-118 13-49 (51)
38 2wq1_A General control protein 90.2 0.48 1.6E-05 28.0 4.1 26 73-98 2-27 (33)
39 2bni_A General control protein 90.0 0.45 1.5E-05 28.3 3.9 27 72-98 2-28 (34)
40 1uo4_A General control protein 90.0 0.45 1.5E-05 28.3 3.9 27 72-98 2-28 (34)
41 1ci6_A Transcription factor AT 90.0 1.4 4.9E-05 28.7 6.9 8 112-119 50-57 (63)
42 2kz5_A Transcription factor NF 89.9 0.024 8.2E-07 40.6 -2.0 24 48-71 64-87 (91)
43 2hy6_A General control protein 89.8 0.47 1.6E-05 28.2 3.9 27 72-98 2-28 (34)
44 2oxj_A Hybrid alpha/beta pepti 89.6 0.67 2.3E-05 27.5 4.4 30 94-123 3-32 (34)
45 1gd2_E Transcription factor PA 89.4 1 3.4E-05 30.5 5.8 36 88-123 32-67 (70)
46 3oja_B Anopheles plasmodium-re 89.3 3.8 0.00013 35.6 11.0 40 74-113 512-551 (597)
47 2v71_A Nuclear distribution pr 89.0 1.4 4.8E-05 35.0 7.4 42 79-120 96-137 (189)
48 2yy0_A C-MYC-binding protein; 89.0 1 3.4E-05 28.9 5.3 31 78-115 19-49 (53)
49 2dgc_A Protein (GCN4); basic d 88.7 0.7 2.4E-05 30.4 4.6 33 91-123 29-61 (63)
50 2xdj_A Uncharacterized protein 88.6 3.6 0.00012 28.5 8.4 41 73-113 22-62 (83)
51 2dfs_A Myosin-5A; myosin-V, in 87.9 7.5 0.00026 37.7 13.0 21 99-119 1023-1043(1080)
52 3m48_A General control protein 87.8 0.67 2.3E-05 27.4 3.5 29 95-123 3-31 (33)
53 1hjb_A Ccaat/enhancer binding 87.7 5.5 0.00019 27.8 10.1 41 88-128 39-79 (87)
54 4etp_A Kinesin-like protein KA 87.4 2.2 7.6E-05 36.8 8.2 54 74-127 6-59 (403)
55 1fmh_A General control protein 87.3 1.3 4.3E-05 25.7 4.5 28 73-100 3-30 (33)
56 1t2k_D Cyclic-AMP-dependent tr 87.1 4.3 0.00015 26.0 8.3 29 94-122 24-52 (61)
57 1gk6_A Vimentin; intermediate 87.0 3.3 0.00011 26.7 7.0 52 73-124 2-53 (59)
58 1t6f_A Geminin; coiled-coil, c 86.4 1.4 4.8E-05 26.5 4.5 30 84-113 6-35 (37)
59 2yy0_A C-MYC-binding protein; 86.1 1.7 5.9E-05 27.7 5.2 16 104-119 24-39 (53)
60 1dh3_A Transcription factor CR 85.8 0.75 2.6E-05 29.5 3.4 31 92-122 22-52 (55)
61 3mq7_A Bone marrow stromal ant 85.5 4.8 0.00016 30.0 8.0 53 74-126 60-112 (121)
62 1nkp_B MAX protein, MYC proto- 85.4 1.3 4.4E-05 30.0 4.6 12 104-115 66-77 (83)
63 3c3f_A Alpha/beta peptide with 85.0 1.8 6.1E-05 25.6 4.4 30 94-123 3-32 (34)
64 3bas_A Myosin heavy chain, str 84.9 7.6 0.00026 26.7 12.2 56 69-124 33-88 (89)
65 3nmd_A CGMP dependent protein 84.8 2.8 9.7E-05 28.6 6.0 27 93-119 41-67 (72)
66 3c3g_A Alpha/beta peptide with 84.8 2.6 8.9E-05 24.8 5.0 29 95-123 3-31 (33)
67 4emc_A Monopolin complex subun 84.4 1.6 5.6E-05 34.8 5.4 45 71-115 13-57 (190)
68 3swy_A Cyclic nucleotide-gated 84.3 5.7 0.00019 24.9 7.0 43 75-120 2-44 (46)
69 3swf_A CGMP-gated cation chann 84.3 5.4 0.00018 27.4 7.3 50 74-126 3-52 (74)
70 1dip_A Delta-sleep-inducing pe 84.0 0.69 2.4E-05 32.1 2.7 30 86-115 16-45 (78)
71 1jnm_A Proto-oncogene C-JUN; B 83.8 6.6 0.00023 25.2 7.6 34 93-126 23-56 (62)
72 1ic2_A Tropomyosin alpha chain 83.7 7.9 0.00027 26.0 9.5 59 68-126 17-75 (81)
73 1uii_A Geminin; human, DNA rep 83.6 5.6 0.00019 27.9 7.2 37 83-119 44-80 (83)
74 2zxx_A Geminin; coiled-coil, c 83.4 4.3 0.00015 28.2 6.6 37 83-119 32-68 (79)
75 3mq7_A Bone marrow stromal ant 83.3 8.7 0.0003 28.6 8.6 37 79-115 72-108 (121)
76 4h22_A Leucine-rich repeat fli 83.3 11 0.00036 27.4 8.9 52 73-124 32-83 (103)
77 3u1c_A Tropomyosin alpha-1 cha 83.1 10 0.00034 26.7 9.4 54 69-122 21-74 (101)
78 3efg_A Protein SLYX homolog; x 83.1 4.7 0.00016 27.5 6.6 53 74-126 10-62 (78)
79 3s4r_A Vimentin; alpha-helix, 82.8 9.9 0.00034 26.5 9.4 30 95-124 59-88 (93)
80 3m9b_A Proteasome-associated A 82.5 2.2 7.7E-05 35.3 5.7 39 73-118 56-94 (251)
81 1nlw_A MAD protein, MAX dimeri 82.5 3.1 0.00011 28.3 5.6 25 71-95 47-71 (80)
82 2oqq_A Transcription factor HY 82.3 2.8 9.4E-05 26.0 4.6 24 71-94 17-40 (42)
83 2r2v_A GCN4 leucine zipper; co 82.2 2.3 7.8E-05 25.2 4.1 25 73-97 3-27 (34)
84 1kd8_B GABH BLL, GCN4 acid bas 81.9 3.3 0.00011 24.8 4.7 30 95-124 4-33 (36)
85 2bni_A General control protein 81.7 1.8 6.1E-05 25.7 3.5 30 94-123 3-32 (34)
86 2v4h_A NF-kappa-B essential mo 81.5 13 0.00046 27.2 11.0 69 55-123 29-107 (110)
87 3u06_A Protein claret segregat 81.4 7.7 0.00026 33.6 9.0 23 75-97 7-29 (412)
88 1wlq_A Geminin; coiled-coil; 2 81.3 6.1 0.00021 27.7 6.7 37 83-119 36-72 (83)
89 2w83_C C-JUN-amino-terminal ki 81.1 3.4 0.00012 28.6 5.3 42 74-115 33-74 (77)
90 3a7p_A Autophagy protein 16; c 81.0 17 0.00058 28.0 13.2 48 72-119 90-137 (152)
91 1p9i_A Cortexillin I/GCN4 hybr 80.7 1.9 6.7E-05 24.6 3.3 20 102-121 9-28 (31)
92 2xv5_A Lamin-A/C; structural p 80.5 11 0.00037 25.5 8.5 52 73-124 7-58 (74)
93 3o0z_A RHO-associated protein 80.2 12 0.00042 29.1 8.9 48 66-115 31-78 (168)
94 1uo4_A General control protein 80.0 2.5 8.5E-05 25.0 3.7 30 94-123 3-32 (34)
95 1p9i_A Cortexillin I/GCN4 hybr 79.7 3.1 0.0001 23.8 3.9 27 73-99 1-27 (31)
96 3cvf_A Homer-3, homer protein 79.7 13 0.00043 25.7 8.4 48 71-118 27-74 (79)
97 3oja_B Anopheles plasmodium-re 79.7 16 0.00056 31.5 10.5 46 74-119 533-578 (597)
98 4etp_A Kinesin-like protein KA 79.4 9.3 0.00032 32.9 8.8 51 69-119 8-58 (403)
99 3m9b_A Proteasome-associated A 79.1 2.7 9.4E-05 34.8 5.1 42 87-128 56-97 (251)
100 1gu4_A CAAT/enhancer binding p 78.9 13 0.00044 25.4 9.6 32 95-126 39-70 (78)
101 2hy6_A General control protein 78.7 3.7 0.00012 24.3 4.1 29 95-123 4-32 (34)
102 3cve_A Homer protein homolog 1 78.4 13 0.00045 25.2 8.4 49 70-118 20-68 (72)
103 3oja_A Leucine-rich immune mol 78.3 21 0.00071 30.3 10.6 45 82-126 425-469 (487)
104 3m91_A Proteasome-associated A 78.3 11 0.00036 24.0 7.1 35 75-109 13-47 (51)
105 2dfs_A Myosin-5A; myosin-V, in 78.2 30 0.001 33.6 12.7 19 75-93 988-1006(1080)
106 3u59_A Tropomyosin beta chain; 77.8 15 0.00052 25.6 9.5 51 69-119 21-71 (101)
107 1nkp_A C-MYC, MYC proto-oncoge 77.7 8.2 0.00028 26.6 6.5 25 95-119 62-86 (88)
108 2wvr_A Geminin; DNA replicatio 77.6 9.2 0.00031 30.9 7.6 45 82-126 112-159 (209)
109 1i84_S Smooth muscle myosin he 77.5 23 0.00078 34.3 11.7 22 100-121 914-935 (1184)
110 1wle_A Seryl-tRNA synthetase; 77.3 10 0.00036 33.8 8.7 51 76-126 82-143 (501)
111 2lw1_A ABC transporter ATP-bin 77.3 14 0.00049 25.1 8.1 55 70-124 21-81 (89)
112 1nkp_B MAX protein, MYC proto- 76.9 11 0.00036 25.3 6.8 30 95-124 50-79 (83)
113 4h22_A Leucine-rich repeat fli 76.1 18 0.00061 26.2 8.1 9 50-58 10-18 (103)
114 2wt7_A Proto-oncogene protein 76.1 13 0.00044 23.9 10.3 30 94-123 25-54 (63)
115 3oja_A Leucine-rich immune mol 76.0 35 0.0012 28.9 12.7 53 74-126 424-476 (487)
116 1nkp_A C-MYC, MYC proto-oncoge 75.9 8.3 0.00028 26.5 6.1 19 104-122 64-82 (88)
117 3u06_A Protein claret segregat 75.8 10 0.00036 32.8 8.1 47 72-118 11-57 (412)
118 1am9_A Srebp-1A, protein (ster 75.6 5.3 0.00018 27.0 5.0 29 54-82 6-34 (82)
119 3s9g_A Protein hexim1; cyclin 75.4 21 0.0007 25.9 8.6 29 70-98 64-92 (104)
120 1kd8_A GABH AIV, GCN4 acid bas 75.2 4.6 0.00016 24.1 3.9 28 96-123 5-32 (36)
121 1a93_B MAX protein, coiled coi 75.0 5.5 0.00019 23.6 4.2 20 96-115 11-30 (34)
122 1x8y_A Lamin A/C; structural p 73.9 18 0.00063 24.6 10.6 55 70-124 27-81 (86)
123 2wt7_B Transcription factor MA 73.5 21 0.00072 25.1 9.2 55 63-117 29-87 (90)
124 1dip_A Delta-sleep-inducing pe 73.3 4.2 0.00014 28.1 4.0 20 72-91 23-42 (78)
125 3na7_A HP0958; flagellar bioge 73.3 24 0.0008 28.1 9.1 52 71-122 32-83 (256)
126 3s4r_A Vimentin; alpha-helix, 73.2 20 0.0007 24.9 8.5 41 78-118 23-68 (93)
127 2wuj_A Septum site-determining 72.0 4.6 0.00016 25.8 3.7 24 73-96 29-52 (57)
128 2r2v_A GCN4 leucine zipper; co 71.8 8.6 0.00029 22.7 4.5 29 95-123 4-32 (34)
129 2v71_A Nuclear distribution pr 71.5 36 0.0012 26.9 13.0 37 75-111 113-149 (189)
130 1go4_E MAD1 (mitotic arrest de 71.5 25 0.00086 25.2 8.6 26 71-96 19-44 (100)
131 2ve7_C Kinetochore protein NUF 71.4 3.8 0.00013 33.4 4.0 81 46-126 116-203 (250)
132 2wq1_A General control protein 70.7 12 0.00042 21.9 5.0 28 96-123 4-31 (33)
133 3a7p_A Autophagy protein 16; c 70.3 34 0.0012 26.2 11.1 57 67-123 78-134 (152)
134 2dq0_A Seryl-tRNA synthetase; 70.3 11 0.00037 33.0 7.0 51 76-126 43-103 (455)
135 2ocy_A RAB guanine nucleotide 70.3 27 0.00094 26.7 8.4 43 98-140 107-149 (154)
136 4emc_A Monopolin complex subun 69.7 11 0.00036 30.1 6.1 36 73-108 22-57 (190)
137 3tnu_B Keratin, type II cytosk 69.6 29 0.00098 25.0 9.6 47 75-121 79-125 (129)
138 1nlw_A MAD protein, MAX dimeri 69.3 13 0.00044 25.2 5.8 14 102-115 64-77 (80)
139 3jsv_C NF-kappa-B essential mo 69.3 28 0.00095 24.8 10.1 74 55-128 7-83 (94)
140 2ve7_A Kinetochore protein HEC 69.3 15 0.00052 30.6 7.3 56 77-132 184-240 (315)
141 1jcd_A Major outer membrane li 69.2 19 0.00066 22.9 7.8 32 72-103 5-36 (52)
142 2oto_A M protein; helical coil 69.1 32 0.0011 25.4 8.9 31 74-104 53-83 (155)
143 2v66_B Nuclear distribution pr 69.1 30 0.001 25.1 10.2 52 73-124 37-88 (111)
144 3qh9_A Liprin-beta-2; coiled-c 69.1 26 0.00089 24.3 8.0 40 83-122 24-63 (81)
145 3tnu_A Keratin, type I cytoske 68.9 30 0.001 25.0 10.1 51 72-122 78-128 (131)
146 2j5u_A MREC protein; bacterial 68.9 2.6 9E-05 34.2 2.5 33 83-115 24-59 (255)
147 1wt6_A Myotonin-protein kinase 68.5 27 0.00091 24.3 10.4 59 58-119 14-72 (81)
148 2wuj_A Septum site-determining 67.9 5.3 0.00018 25.5 3.4 25 97-121 32-56 (57)
149 3qne_A Seryl-tRNA synthetase, 67.8 15 0.00052 32.7 7.4 49 78-126 47-105 (485)
150 2oa5_A Hypothetical protein BQ 67.5 3.3 0.00011 30.5 2.5 24 72-95 9-32 (110)
151 3ra3_A P1C; coiled coil domain 66.4 4.5 0.00015 22.6 2.3 19 82-100 4-22 (28)
152 3tnu_B Keratin, type II cytosk 66.3 11 0.00039 27.2 5.3 28 73-100 45-72 (129)
153 3a2a_A Voltage-gated hydrogen 66.3 21 0.00072 23.3 5.9 37 89-125 15-51 (58)
154 1joc_A EEA1, early endosomal a 65.9 35 0.0012 24.6 8.9 44 71-114 11-54 (125)
155 3a7o_A Autophagy protein 16; c 65.8 29 0.00099 23.7 7.3 43 78-120 32-74 (75)
156 3vkg_A Dynein heavy chain, cyt 65.5 12 0.00043 40.4 7.3 29 61-89 2025-2053(3245)
157 1zme_C Proline utilization tra 65.2 6.6 0.00023 24.7 3.4 25 70-94 43-67 (70)
158 1jcd_A Major outer membrane li 64.0 25 0.00085 22.3 7.8 45 78-122 4-48 (52)
159 3i00_A HIP-I, huntingtin-inter 61.9 37 0.0013 24.8 7.4 47 69-122 38-84 (120)
160 1ik9_A DNA repair protein XRCC 61.0 57 0.0019 25.8 8.9 25 73-97 141-165 (213)
161 1gk7_A Vimentin; intermediate 60.8 15 0.00052 21.9 4.2 23 94-116 15-37 (39)
162 1d7m_A Cortexillin I; coiled-c 60.5 43 0.0015 23.9 9.4 39 64-102 18-56 (101)
163 1am9_A Srebp-1A, protein (ster 60.3 35 0.0012 22.8 7.2 26 70-95 49-74 (82)
164 3mq9_A Bone marrow stromal ant 59.9 77 0.0026 26.6 10.9 27 98-124 442-468 (471)
165 3ghg_A Fibrinogen alpha chain; 59.8 40 0.0014 30.8 8.6 25 75-99 114-138 (562)
166 1gk4_A Vimentin; intermediate 59.2 38 0.0013 22.8 12.1 57 67-123 22-78 (84)
167 2fxo_A Myosin heavy chain, car 58.8 48 0.0016 23.9 9.7 37 75-111 66-102 (129)
168 2k48_A Nucleoprotein; viral pr 58.5 50 0.0017 24.0 9.4 56 72-127 36-103 (107)
169 2xdj_A Uncharacterized protein 58.3 42 0.0014 23.0 9.4 19 100-118 28-46 (83)
170 2fxo_A Myosin heavy chain, car 58.0 50 0.0017 23.8 9.9 31 95-125 65-95 (129)
171 3he5_A Synzip1; heterodimeric 57.9 31 0.001 21.4 6.8 21 80-100 5-25 (49)
172 3w03_C DNA repair protein XRCC 57.8 44 0.0015 26.3 7.6 31 91-121 151-181 (184)
173 2yko_A LINE-1 ORF1P; RNA-bindi 57.6 28 0.00095 28.4 6.6 57 73-136 8-64 (233)
174 3lss_A Seryl-tRNA synthetase; 56.9 36 0.0012 30.2 7.8 14 108-121 113-126 (484)
175 3vkg_A Dynein heavy chain, cyt 55.7 1.3E+02 0.0044 33.0 12.7 55 78-132 2028-2082(3245)
176 3i00_A HIP-I, huntingtin-inter 55.6 57 0.002 23.8 9.6 56 71-126 15-81 (120)
177 3mov_A Lamin-B1; LMNB1, B-type 55.4 50 0.0017 23.0 10.3 53 71-123 37-89 (95)
178 2lz1_A Nuclear factor erythroi 55.3 0.18 6.2E-06 36.0 -5.9 23 49-71 65-87 (90)
179 3qh9_A Liprin-beta-2; coiled-c 54.9 50 0.0017 22.9 9.0 26 71-96 26-51 (81)
180 3ra3_B P2F; coiled coil domain 54.8 12 0.00041 20.8 2.8 9 86-94 8-16 (28)
181 1l8d_A DNA double-strand break 54.8 24 0.00082 24.3 5.1 6 127-132 50-55 (112)
182 3ol1_A Vimentin; structural ge 54.2 57 0.0019 23.3 9.4 36 84-119 68-103 (119)
183 4ath_A MITF, microphthalmia-as 54.2 36 0.0012 23.6 5.8 16 103-118 60-75 (83)
184 3vmx_A Voltage-gated hydrogen 53.7 39 0.0013 21.3 7.0 41 86-126 5-45 (48)
185 3bbp_D GRIP and coiled-coil do 53.0 13 0.00046 25.2 3.4 44 75-118 19-62 (71)
186 2er8_A Regulatory protein Leu3 52.5 8.3 0.00029 24.5 2.2 21 70-90 48-68 (72)
187 1ses_A Seryl-tRNA synthetase; 52.5 1.1E+02 0.0038 26.2 11.5 27 100-126 72-98 (421)
188 1wt6_A Myotonin-protein kinase 52.2 56 0.0019 22.6 7.6 44 83-126 29-72 (81)
189 3tnu_A Keratin, type I cytoske 52.1 63 0.0022 23.2 9.4 16 101-116 86-101 (131)
190 2v66_B Nuclear distribution pr 51.9 65 0.0022 23.3 12.6 46 80-125 37-82 (111)
191 3qne_A Seryl-tRNA synthetase, 51.7 78 0.0027 28.1 9.1 30 90-119 76-105 (485)
192 3trt_A Vimentin; cytoskeleton, 51.2 47 0.0016 21.5 7.4 34 75-108 39-72 (77)
193 2e7s_A RAB guanine nucleotide 50.9 69 0.0024 24.0 7.4 15 104-118 65-79 (135)
194 3q0x_A Centriole protein; cent 50.9 81 0.0028 25.4 8.4 55 47-107 160-214 (228)
195 2ve7_C Kinetochore protein NUF 50.7 9.8 0.00034 30.8 2.9 36 89-124 145-180 (250)
196 2dq0_A Seryl-tRNA synthetase; 50.3 1.1E+02 0.0037 26.6 9.7 68 75-142 35-112 (455)
197 3e98_A GAF domain of unknown f 49.6 63 0.0022 25.8 7.6 41 74-118 68-108 (252)
198 1wle_A Seryl-tRNA synthetase; 49.1 1.4E+02 0.0048 26.4 11.4 62 66-127 79-151 (501)
199 3na7_A HP0958; flagellar bioge 48.8 97 0.0033 24.4 13.2 15 76-90 95-109 (256)
200 1hlo_A Protein (transcription 48.8 17 0.00059 24.1 3.4 19 94-112 59-77 (80)
201 3ghg_A Fibrinogen alpha chain; 48.7 45 0.0015 30.5 7.0 31 96-126 114-144 (562)
202 2j5u_A MREC protein; bacterial 48.1 9.9 0.00034 30.7 2.5 12 91-102 25-36 (255)
203 1lwu_C Fibrinogen gamma chain; 47.8 78 0.0027 26.7 8.1 8 111-118 38-45 (323)
204 4fi5_A Nucleoprotein; structur 46.2 85 0.0029 23.0 8.9 24 104-127 67-90 (113)
205 3thf_A Protein shroom; coiled- 45.7 1E+02 0.0034 24.4 7.9 30 66-95 14-43 (190)
206 3he4_A Synzip6; heterodimeric 45.4 43 0.0015 21.2 4.6 33 73-105 19-51 (56)
207 4b4t_K 26S protease regulatory 44.9 42 0.0014 29.0 6.1 45 74-118 45-89 (428)
208 1ses_A Seryl-tRNA synthetase; 44.4 90 0.0031 26.8 8.1 42 101-142 66-107 (421)
209 2ic6_A Nucleocapsid protein; h 43.3 78 0.0027 21.7 8.9 56 72-127 6-73 (78)
210 1a93_B MAX protein, coiled coi 43.2 47 0.0016 19.5 4.2 18 77-94 13-30 (34)
211 3c9i_A Tail needle protein GP2 42.8 83 0.0029 25.6 7.1 45 91-135 104-148 (242)
212 2zvf_A Alanyl-tRNA synthetase; 42.2 73 0.0025 23.2 6.4 29 89-117 29-57 (171)
213 2oa5_A Hypothetical protein BQ 42.0 16 0.00054 26.8 2.5 23 94-116 10-32 (110)
214 2ic9_A Nucleocapsid protein; h 41.9 92 0.0031 22.2 8.9 55 73-127 7-73 (96)
215 1zxa_A CGMP-dependent protein 41.7 47 0.0016 22.1 4.7 18 106-123 39-56 (67)
216 1fmh_B General control protein 41.3 49 0.0017 18.9 5.0 25 74-98 4-28 (33)
217 2oto_A M protein; helical coil 40.5 1.1E+02 0.0037 22.5 8.9 22 97-118 55-76 (155)
218 1zxa_A CGMP-dependent protein 39.9 71 0.0024 21.2 5.3 30 69-98 23-52 (67)
219 3q0x_A Centriole protein; cent 39.8 1.5E+02 0.005 23.9 8.4 44 76-119 169-212 (228)
220 1fxk_C Protein (prefoldin); ar 39.8 97 0.0033 21.8 6.5 28 74-101 98-125 (133)
221 3uux_B Mitochondrial division 39.8 1.4E+02 0.0047 24.5 8.1 48 72-126 178-225 (242)
222 3w03_C DNA repair protein XRCC 39.5 83 0.0028 24.6 6.5 28 72-99 146-173 (184)
223 4gkw_A Spindle assembly abnorm 39.5 1.3E+02 0.0043 23.0 7.6 25 95-119 136-160 (167)
224 2ocy_A RAB guanine nucleotide 39.3 1.3E+02 0.0043 23.0 10.9 40 95-134 111-150 (154)
225 3iv1_A Tumor susceptibility ge 38.4 93 0.0032 21.2 10.2 56 69-124 16-71 (78)
226 1deq_A Fibrinogen (alpha chain 38.1 1E+02 0.0035 27.0 7.4 11 51-61 67-77 (390)
227 3oa7_A Head morphogenesis prot 38.1 1.4E+02 0.0046 24.0 7.6 38 82-119 34-71 (206)
228 2b5u_A Colicin E3; high resolu 38.0 2.3E+02 0.008 25.7 10.6 55 73-127 316-370 (551)
229 2fic_A Bridging integrator 1; 37.6 1.4E+02 0.0047 22.9 8.7 11 108-118 199-209 (251)
230 3lss_A Seryl-tRNA synthetase; 37.3 2.1E+02 0.0071 25.3 9.5 27 101-127 113-139 (484)
231 3tq2_A KE1; parallel three hel 37.1 62 0.0021 18.8 5.5 30 89-118 5-34 (36)
232 2efr_A General control protein 37.0 1.4E+02 0.0046 22.7 8.6 15 73-87 72-86 (155)
233 1deq_A Fibrinogen (alpha chain 36.8 1.2E+02 0.0041 26.5 7.6 11 73-83 69-79 (390)
234 2zvf_A Alanyl-tRNA synthetase; 36.3 34 0.0012 25.0 3.7 26 75-100 29-54 (171)
235 4b4t_K 26S protease regulatory 36.0 87 0.003 27.0 6.7 45 82-126 46-90 (428)
236 3o0z_A RHO-associated protein 34.7 1.6E+02 0.0054 22.8 12.9 41 55-95 74-114 (168)
237 2zqm_A Prefoldin beta subunit 34.6 1.1E+02 0.0037 20.8 7.4 40 88-127 73-112 (117)
238 1ic2_A Tropomyosin alpha chain 34.0 1E+02 0.0035 20.4 9.5 20 103-122 45-64 (81)
239 3htk_A Structural maintenance 33.8 83 0.0028 19.3 9.3 44 76-119 10-53 (60)
240 2w6b_A RHO guanine nucleotide 33.7 96 0.0033 20.0 5.5 21 75-95 14-34 (56)
241 4e61_A Protein BIM1; EB1-like 33.5 1.3E+02 0.0046 21.6 9.0 42 76-117 9-50 (106)
242 2zqm_A Prefoldin beta subunit 33.3 1.1E+02 0.0039 20.7 7.4 11 105-115 97-107 (117)
243 3kpe_A Fusion glycoprotein F0; 33.1 93 0.0032 19.7 7.3 46 83-128 2-47 (51)
244 1lrz_A FEMA, factor essential 32.5 2.1E+02 0.007 23.9 8.4 16 109-124 284-299 (426)
245 1gmj_A ATPase inhibitor; coile 32.3 1.3E+02 0.0043 20.9 9.2 10 57-66 23-32 (84)
246 2akf_A Coronin-1A; coiled coil 32.3 73 0.0025 18.2 4.8 23 76-98 4-26 (32)
247 1ytz_T Troponin T; muscle, THI 32.3 1.4E+02 0.0047 21.3 7.3 64 62-125 19-89 (107)
248 3bas_A Myosin heavy chain, str 31.5 1.2E+02 0.0041 20.5 9.5 48 78-125 35-82 (89)
249 1uii_A Geminin; human, DNA rep 30.9 1.3E+02 0.0045 20.8 8.8 23 96-118 50-72 (83)
250 1m1j_C Fibrinogen gamma chain; 30.5 1.9E+02 0.0064 25.1 7.9 17 109-125 115-131 (409)
251 4ani_A Protein GRPE; chaperone 30.5 2E+02 0.0067 22.8 7.5 10 75-84 70-79 (213)
252 3nmd_A CGMP dependent protein 30.5 1.3E+02 0.0043 20.3 8.1 26 69-94 38-63 (72)
253 2dq3_A Seryl-tRNA synthetase; 30.4 90 0.0031 26.8 5.9 50 77-126 43-102 (425)
254 3mq9_A Bone marrow stromal ant 30.4 2.4E+02 0.0081 23.5 9.5 11 113-123 450-460 (471)
255 2dq3_A Seryl-tRNA synthetase; 30.3 1.1E+02 0.0039 26.1 6.5 31 91-121 74-104 (425)
256 3m0d_C TNF receptor-associated 30.2 1.1E+02 0.0037 19.6 9.7 55 70-124 5-59 (65)
257 1gmj_A ATPase inhibitor; coile 30.2 1.4E+02 0.0047 20.7 7.3 42 56-97 34-77 (84)
258 2q6q_A Spindle POLE BODY compo 30.0 1.3E+02 0.0044 20.3 8.3 53 74-126 6-58 (74)
259 4e61_A Protein BIM1; EB1-like 29.9 91 0.0031 22.5 4.9 20 79-98 19-38 (106)
260 1g6u_A Domain swapped dimer; d 29.0 1E+02 0.0035 18.9 6.2 14 105-118 26-39 (48)
261 1fxk_A Prefoldin; archaeal pro 28.9 1.3E+02 0.0045 20.0 7.1 38 89-126 69-106 (107)
262 1uix_A RHO-associated kinase; 28.4 1.4E+02 0.0046 20.1 8.3 30 76-105 2-31 (71)
263 2xv5_A Lamin-A/C; structural p 28.2 1.3E+02 0.0046 19.9 8.6 50 66-115 7-56 (74)
264 3u1c_A Tropomyosin alpha-1 cha 28.0 1.5E+02 0.0051 20.5 12.7 27 73-99 32-58 (101)
265 1ik9_A DNA repair protein XRCC 27.8 2.2E+02 0.0076 22.3 9.0 38 74-111 135-172 (213)
266 1fxk_C Protein (prefoldin); ar 27.5 1.6E+02 0.0055 20.6 8.1 32 74-105 91-122 (133)
267 2wg5_A General control protein 27.5 63 0.0022 22.7 3.7 15 105-119 20-34 (109)
268 2xzr_A Immunoglobulin-binding 26.8 1.8E+02 0.0062 21.0 10.9 32 90-121 74-105 (114)
269 3q4f_C DNA repair protein XRCC 26.6 1.5E+02 0.0052 23.4 6.0 18 73-90 163-180 (186)
270 2i1j_A Moesin; FERM, coiled-co 26.3 59 0.002 29.1 4.1 46 73-118 337-382 (575)
271 1hlo_A Protein (transcription 26.2 1.4E+02 0.0048 19.5 5.4 48 70-120 28-78 (80)
272 2gkw_A TNF receptor-associated 26.0 1.4E+02 0.0048 22.3 5.7 24 74-97 3-26 (192)
273 3lay_A Zinc resistance-associa 25.7 2.2E+02 0.0077 21.7 7.1 20 100-119 114-133 (175)
274 4ati_A MITF, microphthalmia-as 25.7 62 0.0021 23.2 3.4 21 101-121 93-113 (118)
275 4ati_A MITF, microphthalmia-as 25.4 75 0.0026 22.7 3.8 21 61-81 34-54 (118)
276 1m1j_B Fibrinogen beta chain; 25.2 3.6E+02 0.012 23.8 9.4 57 70-126 99-162 (464)
277 2yko_A LINE-1 ORF1P; RNA-bindi 24.8 2.1E+02 0.0073 23.1 6.8 37 70-106 12-48 (233)
278 3lay_A Zinc resistance-associa 24.7 2.3E+02 0.008 21.6 9.4 32 94-128 115-146 (175)
279 2efr_A General control protein 24.7 2.3E+02 0.0078 21.4 10.1 11 106-116 119-129 (155)
280 3ljm_A Coil Ser L9C; de novo d 24.6 1E+02 0.0035 17.3 4.5 22 74-95 4-25 (31)
281 1fzc_C Fibrin; blood coagulati 24.0 44 0.0015 28.2 2.7 27 72-98 5-31 (319)
282 1j1d_B Troponin T, TNT; THIN f 23.9 2E+02 0.0068 20.5 9.7 45 81-125 45-89 (106)
283 1joc_A EEA1, early endosomal a 23.9 2E+02 0.0068 20.5 8.7 47 76-122 9-55 (125)
284 2l5g_B Putative uncharacterize 23.8 1.3E+02 0.0045 18.3 5.0 31 75-105 6-36 (42)
285 3kin_B Kinesin heavy chain; mo 23.6 1.6E+02 0.0053 20.9 5.2 18 79-96 90-107 (117)
286 1m1j_A Fibrinogen alpha subuni 23.5 3.1E+02 0.011 24.6 8.1 7 54-60 68-74 (491)
287 1hwt_C Protein (heme activator 23.3 34 0.0011 21.9 1.5 22 69-90 56-77 (81)
288 2p4v_A Transcription elongatio 23.3 2.3E+02 0.0078 20.9 8.8 54 73-126 11-73 (158)
289 3mud_A DNA repair protein XRCC 23.1 2.7E+02 0.0091 21.6 7.1 19 76-94 133-151 (175)
290 1tu3_F RAB GTPase binding effe 22.7 1.5E+02 0.005 20.4 4.6 25 110-134 44-75 (79)
291 2aze_B Transcription factor E2 22.4 1.6E+02 0.0053 20.8 5.0 31 74-104 9-39 (106)
292 1hs7_A Syntaxin VAM3; UP-and-D 22.4 2E+02 0.007 20.0 6.3 52 74-125 36-90 (97)
293 3rrk_A V-type ATPase 116 kDa s 22.3 2.5E+02 0.0085 22.6 6.9 40 73-112 94-136 (357)
294 3mtu_A Tropomyosin alpha-1 cha 21.5 1.8E+02 0.0062 19.1 5.4 33 73-105 18-50 (75)
295 4dzo_A Mitotic spindle assembl 21.5 2.3E+02 0.0079 20.4 5.9 22 72-93 5-26 (123)
296 3coq_A Regulatory protein GAL4 20.8 1.1E+02 0.0036 19.6 3.6 21 71-91 45-65 (89)
297 3q8t_A Beclin-1; autophagy, AT 20.1 2.2E+02 0.0075 19.5 13.0 50 73-122 41-90 (96)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.57 E-value=4e-15 Score=98.26 Aligned_cols=51 Identities=37% Similarity=0.528 Sum_probs=47.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 50 KRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLES 100 (153)
Q Consensus 50 KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~ 100 (153)
|+.+|+++||+||++||.||++|+++||.+|..|+.+|..|..++..|+..
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999999999999999998887654
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.42 E-value=9.2e-13 Score=88.59 Aligned_cols=56 Identities=27% Similarity=0.455 Sum_probs=49.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 49 EKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQI 104 (153)
Q Consensus 49 ~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L 104 (153)
+||.+|+.+||+||++||.||++++.+|+.+|..|+.+|..|..++..|+.+...|
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999987665544443
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.38 E-value=2.5e-12 Score=85.69 Aligned_cols=55 Identities=29% Similarity=0.407 Sum_probs=48.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 50 KRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQI 104 (153)
Q Consensus 50 KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L 104 (153)
||.+|+.+||+||++||.||++|+.+|+.+|..|+.+|..|..++..|+.++..|
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999988765444433
No 4
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.30 E-value=6.9e-12 Score=83.88 Aligned_cols=53 Identities=28% Similarity=0.337 Sum_probs=47.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 50 KRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNH 102 (153)
Q Consensus 50 KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~ 102 (153)
|+.+|..+||+||++||.||++++.+|+.+|..|+.+|..|..++..|..++.
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999887654433
No 5
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.28 E-value=8.1e-12 Score=84.37 Aligned_cols=54 Identities=26% Similarity=0.346 Sum_probs=43.2
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 48 NEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESN 101 (153)
Q Consensus 48 e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~ 101 (153)
+++..++..+||+||++||.||++|+.+|+.+|..|+.+|..|..++..|...+
T Consensus 7 ~d~~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 7 SDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556699999999999999999999999999999999888888776543
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=99.11 E-value=1.4e-10 Score=80.10 Aligned_cols=62 Identities=26% Similarity=0.271 Sum_probs=52.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 51 RLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLK 112 (153)
Q Consensus 51 R~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr 112 (153)
..||+..||.|++.+|.||.+|+.+||.+|..|+..+..|..++..|..++..|..||..|+
T Consensus 9 ~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 9 SSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 35899999999999999999999999999999999998877777777777777777666553
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=99.08 E-value=3.4e-10 Score=76.17 Aligned_cols=51 Identities=29% Similarity=0.415 Sum_probs=41.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 50 KRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLES 100 (153)
Q Consensus 50 KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~ 100 (153)
|+.+++.+||.||+|+|.||+++..+|+.++..|+.+|..|..++..|+.+
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999998766543
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.69 E-value=1.5e-07 Score=67.27 Aligned_cols=54 Identities=24% Similarity=0.185 Sum_probs=47.0
Q ss_pred ccchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 44 ASIINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISL 97 (153)
Q Consensus 44 ~~~~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L 97 (153)
.+..|++-..|..+|.+||++||.+++....+++.++..|+.+|..|..+|..|
T Consensus 9 ~dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L 62 (87)
T 1hjb_A 9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQL 62 (87)
T ss_dssp -CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667778999999999999999999999999999999999999988753
No 9
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.68 E-value=1.6e-07 Score=65.87 Aligned_cols=56 Identities=23% Similarity=0.169 Sum_probs=47.7
Q ss_pred cchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 45 SIINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLES 100 (153)
Q Consensus 45 ~~~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~ 100 (153)
+..|+.-..|..+|.+||++||.+++....+++.++..|+.+|..|..+|..|..+
T Consensus 10 dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E 65 (78)
T 1gu4_A 10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRE 65 (78)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555668999999999999999999999999999999999999998865433
No 10
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.30 E-value=6.4e-06 Score=59.21 Aligned_cols=53 Identities=21% Similarity=0.315 Sum_probs=43.1
Q ss_pred chhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 46 IINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLL 98 (153)
Q Consensus 46 ~~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~ 98 (153)
...-|-.||.++||.+|+-+|.||.....+||.++..|..+...|..++..+.
T Consensus 23 v~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~ 75 (90)
T 2wt7_B 23 VIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLA 75 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888999999999999999999999999888877777666665555443
No 11
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.28 E-value=1.7e-08 Score=74.71 Aligned_cols=51 Identities=29% Similarity=0.350 Sum_probs=40.6
Q ss_pred chhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 46 IINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLIS 96 (153)
Q Consensus 46 ~~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~ 96 (153)
..+-|..||.++||.+|+.||.||.+..++||.++..|..+...|..++..
T Consensus 33 ~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~ 83 (107)
T 3a5t_A 33 IIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENAS 83 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445589999999999999999999999999997777666665555444443
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.58 E-value=0.00024 Score=44.40 Aligned_cols=39 Identities=28% Similarity=0.481 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 70 KKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKV 115 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l 115 (153)
|+|+.+||.++.+|+..|++|..++..| .+||..||+-+
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstL-------q~EN~mLRqvl 40 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTL-------QNENQMLRHIL 40 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHh
Confidence 6899999999999999999988888876 47777777654
No 13
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.88 E-value=0.0064 Score=42.81 Aligned_cols=56 Identities=23% Similarity=0.360 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPL 129 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~ 129 (153)
.-|..+++.|+.+|..|..++..+......|..||..|+++....+.+|..+++-|
T Consensus 23 ~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 23 TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555666666677777777777766677799999999999999998888887653
No 14
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=96.59 E-value=0.00089 Score=48.13 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=27.4
Q ss_pred chhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 041582 46 IINEKRLKRVISNRESARRSRMRKKKLIEELQA 78 (153)
Q Consensus 46 ~~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~ 78 (153)
....|..||..+||.+|+++|+||.+..+.|+.
T Consensus 58 l~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 58 RQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 345678899999999999999999999888763
No 15
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=95.77 E-value=0.054 Score=36.23 Aligned_cols=41 Identities=32% Similarity=0.461 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKE 113 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~ 113 (153)
+..-|.+|.+|..-|..|..++..++...+.|..||..|+.
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 45568899999999999999999999999999999999973
No 16
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.46 E-value=0.072 Score=37.39 Aligned_cols=48 Identities=23% Similarity=0.301 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
+-++.||.+|..+-....-|..++..|.+++..|..+|..++.....|
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L 53 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREEL 53 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 457889999999999888888888888888888888888855543333
No 17
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.44 E-value=0.15 Score=38.52 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 68 RKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 68 RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
+.+...+.|+.+++.+..+...|..++..++.++..+..++..|+.++..|+..+..+.
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456788888888888888888888888888888888888888888888877666553
No 18
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=94.96 E-value=0.2 Score=32.42 Aligned_cols=48 Identities=25% Similarity=0.270 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQL 120 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~ 120 (153)
.+.|-.+|+.|+.||..|+.++..=..+...|+.|-.-+++-+..|+.
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~ 52 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
Confidence 478889999999999999999999999999999999888887776653
No 19
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=94.07 E-value=0.17 Score=34.70 Aligned_cols=58 Identities=12% Similarity=0.216 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRG 131 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~ 131 (153)
.++..+++.++.+|..|..+|..|+.....-..+-..++.++..+...|...+.-|+.
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~e 60 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTE 60 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3567788888888888888888888888877777777877777777666555544433
No 20
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=93.75 E-value=0.36 Score=35.16 Aligned_cols=45 Identities=20% Similarity=0.179 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSE-------KLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~-------~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
-+||.++..++.+|..|.. ++..|..+...|..||..|+.+-...
T Consensus 40 l~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~ 91 (104)
T 3s9g_A 40 LELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELH 91 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4688888888888888777 56666777777777777776665444
No 21
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=93.49 E-value=0.41 Score=29.96 Aligned_cols=44 Identities=20% Similarity=0.331 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKV 115 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l 115 (153)
.+..||.+|..|+.+|..|..+.-.-..-..-|+.|-.-|+.++
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999998887555555556666666666554
No 22
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=93.41 E-value=0.11 Score=36.20 Aligned_cols=57 Identities=23% Similarity=0.262 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLR 130 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~ 130 (153)
+++..+++.++.+|..|..+|..|+.....-..+-..++.++..+...|...+.-|+
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~ 65 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELS 65 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 456677888888888888888888888877777777777777777666655544433
No 23
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=93.40 E-value=0.1 Score=30.92 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLL 98 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~ 98 (153)
|..||.+|+.|-.+|..|..++..|.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 55677777777777777776666553
No 24
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=93.00 E-value=0.15 Score=30.33 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLL 98 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~ 98 (153)
+|..||.+|+.|-.+|..|..++..|+
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 456677777766666666666555443
No 25
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=92.81 E-value=0.23 Score=29.85 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLE 99 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~ 99 (153)
+|..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4678888888888888888777776654
No 26
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=92.63 E-value=1.9 Score=32.42 Aligned_cols=58 Identities=12% Similarity=0.074 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582 68 RKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDL 125 (153)
Q Consensus 68 RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~ 125 (153)
.=...+++++.++..|..+...+..++..+..+...|..++..|..++..|...|.+.
T Consensus 79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~~ 136 (138)
T 3hnw_A 79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELNDS 136 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3345666677777777777777777777777777777777777777777777766553
No 27
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=92.43 E-value=1 Score=31.20 Aligned_cols=63 Identities=22% Similarity=0.201 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccC
Q 041582 74 EELQAQVNHVQTVNHQLSEKL-------ISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLEEVN 136 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i-------~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~~~~ 136 (153)
.++-.+|+.|-.||.+|...- ..|-.+...|.+|+..|+.++.+++.....+...+..+|+..
T Consensus 5 ~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 5 EFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888876653 345567888999999999999999988888888877777653
No 28
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=92.21 E-value=0.85 Score=29.05 Aligned_cols=38 Identities=26% Similarity=0.251 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 77 QAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEK 114 (153)
Q Consensus 77 E~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~ 114 (153)
+.++..|..-|..|..++..|+..+..++.|+..|+.-
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~L 40 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKL 40 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 56788899999999999999988888888777666543
No 29
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=91.75 E-value=0.25 Score=29.70 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLE 99 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~ 99 (153)
+|..||.+|+.|..+|..|..++..|+.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4677888888888888888887776654
No 30
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=91.75 E-value=1.3 Score=29.16 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=18.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Q 041582 53 KRVISNRESARRSRMRKKKLIEELQ 77 (153)
Q Consensus 53 RR~lkNReSArrSR~RKk~~l~eLE 77 (153)
+..-+||.+++++|.|=+..++-..
T Consensus 4 ~kryknr~asrk~rakfkn~lqh~r 28 (63)
T 2c9l_Y 4 IKRYKNRVAARKSRAKFKQLLQHYR 28 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456899999999998777655443
No 31
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=91.56 E-value=0.29 Score=29.07 Aligned_cols=27 Identities=0% Similarity=0.149 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLL 98 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~ 98 (153)
+|..||.+|+.|-.+|..|..++..|+
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 456777777777777766666665543
No 32
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=91.35 E-value=1.6 Score=31.46 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLES 100 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~ 100 (153)
.+..|..+++.|+.||..|..++..|+-+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888888777654
No 33
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=91.05 E-value=0.78 Score=30.13 Aligned_cols=37 Identities=27% Similarity=0.254 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 77 QAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKE 113 (153)
Q Consensus 77 E~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~ 113 (153)
|.++..|...|-.|..++..|+.+|...+.|+..|..
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888887777777776665544
No 34
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.88 E-value=2.7 Score=30.26 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
..|+.++.....+...|...+..-.......+.++..+..+|..|-
T Consensus 15 ~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 15 NTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443333333344444444444444443
No 35
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=90.54 E-value=0.42 Score=28.21 Aligned_cols=26 Identities=4% Similarity=0.217 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLL 98 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~ 98 (153)
|..||.+|+.|-.+|..|..++..|+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45667777766666666666655443
No 36
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=90.48 E-value=0.92 Score=31.12 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
.++.+||.++..++.-...|...+..-+.....|..+.+.|..++..+.
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677888888888877777777777766666666666666666665554
No 37
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=90.46 E-value=1.7 Score=27.80 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 82 HVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 82 ~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
.|+.++..|..++..|...+.....+-..|++++..|
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444333344444444455554443
No 38
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=90.16 E-value=0.48 Score=27.99 Aligned_cols=26 Identities=4% Similarity=0.112 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLL 98 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~ 98 (153)
|..||.+|+.|-.++..|..++..|+
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56788888888777777777776554
No 39
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=90.02 E-value=0.45 Score=28.30 Aligned_cols=27 Identities=7% Similarity=0.367 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLL 98 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~ 98 (153)
+|..||.+|+.|-.+|..|..++..|+
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 456677777777777666666665543
No 40
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=90.01 E-value=0.45 Score=28.29 Aligned_cols=27 Identities=4% Similarity=0.162 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLL 98 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~ 98 (153)
+|..||.+|+.|-.+|..|..++..|.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 356677777777777777666666543
No 41
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=89.99 E-value=1.4 Score=28.75 Aligned_cols=8 Identities=13% Similarity=0.372 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 041582 112 KEKVSSLQ 119 (153)
Q Consensus 112 r~~l~~Lq 119 (153)
+.++..|.
T Consensus 50 ~~E~~~Lk 57 (63)
T 1ci6_A 50 AKEIQYLK 57 (63)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 42
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=89.95 E-value=0.024 Score=40.64 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=20.7
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHH
Q 041582 48 NEKRLKRVISNRESARRSRMRKKK 71 (153)
Q Consensus 48 e~KR~RR~lkNReSArrSR~RKk~ 71 (153)
.-+..||..+||++|+.+|+||..
T Consensus 64 lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 64 LVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Confidence 346778999999999999999864
No 43
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=89.83 E-value=0.47 Score=28.17 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLL 98 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~ 98 (153)
+|..||.+|+.|-.+|..|..++..|+
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456777788777777777777766554
No 44
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=89.56 E-value=0.67 Score=27.51 Aligned_cols=30 Identities=17% Similarity=0.390 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 94 LISLLESNHQIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 94 i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
+..|+.+...|..+|..|..++..|+..|.
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 455667777888888888888888887764
No 45
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=89.35 E-value=1 Score=30.49 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 88 HQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 88 ~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
..|..++..|...+..|..||..|+.++..|+..+.
T Consensus 32 ~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 32 KALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566677777777777777766554
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.27 E-value=3.8 Score=35.56 Aligned_cols=40 Identities=13% Similarity=0.096 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKE 113 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~ 113 (153)
..++.+.+.++.++..+.+++...++++..+..|...|+.
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 551 (597)
T 3oja_B 512 THLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEK 551 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHH
Confidence 3334444444444444444444444444444444443333
No 47
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=89.04 E-value=1.4 Score=35.05 Aligned_cols=42 Identities=10% Similarity=0.221 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 79 QVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQL 120 (153)
Q Consensus 79 kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~ 120 (153)
++..|...+..|...|..|...++.|+...+.+..-+..+..
T Consensus 96 el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~ 137 (189)
T 2v71_A 96 DLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQ 137 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHH
Confidence 333333333333333333333333333333333333333333
No 48
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=88.99 E-value=1 Score=28.87 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 78 AQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKV 115 (153)
Q Consensus 78 ~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l 115 (153)
..|+.|+.||..|+.++. .|..++.+|+.++
T Consensus 19 ~d~eaLk~E~~eLk~k~~-------~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYE-------AIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 345555555555555544 4445555555544
No 49
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=88.68 E-value=0.7 Score=30.42 Aligned_cols=33 Identities=15% Similarity=0.370 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 91 SEKLISLLESNHQIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 91 ~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
...+..|+.+...|..+|..|+.++..|+..|.
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677777778888899999999988887664
No 50
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=88.58 E-value=3.6 Score=28.52 Aligned_cols=41 Identities=20% Similarity=0.189 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKE 113 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~ 113 (153)
+-+|-.++..|+.|...|+..++.+.-+...+....+.+=.
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~ 62 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILL 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777776666555555554444433
No 51
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=87.93 E-value=7.5 Score=37.70 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041582 99 ESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 99 ~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
++...|..||..|++++..|.
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334456667777777666665
No 52
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=87.75 E-value=0.67 Score=27.37 Aligned_cols=29 Identities=17% Similarity=0.324 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 95 ISLLESNHQIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 95 ~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
..|+.+...|..+|..|..++..|+..|.
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 45667777888899999999988887764
No 53
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=87.69 E-value=5.5 Score=27.85 Aligned_cols=41 Identities=22% Similarity=0.385 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 041582 88 HQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAP 128 (153)
Q Consensus 88 ~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~ 128 (153)
..+..++..|+.++..|..+...|+.++..|...|.++-.+
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~ 79 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEP 79 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHH
Confidence 34555555555555555555555555555555555554433
No 54
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=87.38 E-value=2.2 Score=36.81 Aligned_cols=54 Identities=11% Similarity=0.082 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLA 127 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~ 127 (153)
+.|+.++..|+.+...|...+..++..+..+..+-..-......|-..|.++.+
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344444444444444444444444444444333333333333334444555443
No 55
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=87.33 E-value=1.3 Score=25.69 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLES 100 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~ 100 (153)
+..||.+|.+.+.+|-+|..++..|+..
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 5678888888888888888888777543
No 56
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=87.10 E-value=4.3 Score=25.97 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 94 LISLLESNHQIVQENSQLKEKVSSLQLVI 122 (153)
Q Consensus 94 i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L 122 (153)
+..|+.....|..+|..|+.++..|+..+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555554433
No 57
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=86.97 E-value=3.3 Score=26.69 Aligned_cols=52 Identities=12% Similarity=0.263 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
+.++...+..|+.+...++..+......++.|++=.-.|..++...+..|..
T Consensus 2 l~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLEg 53 (59)
T 1gk6_A 2 MKQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLEG 53 (59)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 3467778888888888888888888889999999999999999999988763
No 58
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=86.42 E-value=1.4 Score=26.51 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 84 QTVNHQLSEKLISLLESNHQIVQENSQLKE 113 (153)
Q Consensus 84 e~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~ 113 (153)
-.||.+|...++.-.++...|..||.+|.+
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 368999999999999999999999998864
No 59
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=86.13 E-value=1.7 Score=27.74 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 041582 104 IVQENSQLKEKVSSLQ 119 (153)
Q Consensus 104 L~~EN~~Lr~~l~~Lq 119 (153)
|..||..|++++..|.
T Consensus 24 Lk~E~~eLk~k~~~L~ 39 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIV 39 (53)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 60
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=85.83 E-value=0.75 Score=29.48 Aligned_cols=31 Identities=23% Similarity=0.220 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 92 EKLISLLESNHQIVQENSQLKEKVSSLQLVI 122 (153)
Q Consensus 92 ~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L 122 (153)
..+..|+.+...|..||..|+.++..|+..+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4467777778888999999999998887654
No 61
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=85.53 E-value=4.8 Score=29.98 Aligned_cols=53 Identities=19% Similarity=0.197 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
+.|+.+...-+....+|..+|..|.++++...+|-.+|+.....|..++.+..
T Consensus 60 ~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~~ 112 (121)
T 3mq7_A 60 ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADKK 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhcc
Confidence 44555444445556667777777777777777777777777777777766655
No 62
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=85.40 E-value=1.3 Score=29.97 Aligned_cols=12 Identities=25% Similarity=0.540 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 041582 104 IVQENSQLKEKV 115 (153)
Q Consensus 104 L~~EN~~Lr~~l 115 (153)
|..+|..|+.++
T Consensus 66 L~~~~~~L~~~l 77 (83)
T 1nkp_B 66 LKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444444
No 63
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=85.00 E-value=1.8 Score=25.64 Aligned_cols=30 Identities=3% Similarity=0.141 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 94 LISLLESNHQIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 94 i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
+..|+.+...|..+|..|..++..|+..|.
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 445666777788888888888888887764
No 64
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=84.88 E-value=7.6 Score=26.75 Aligned_cols=56 Identities=16% Similarity=0.312 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 69 KKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 69 Kk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
-.....+|+.+...|..+...|..++..+...+..|......|..++..|..+|.+
T Consensus 33 ~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~e 88 (89)
T 3bas_A 33 TERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVGE 88 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33445678888888999988988888889999999999999999999999888754
No 65
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=84.80 E-value=2.8 Score=28.62 Aligned_cols=27 Identities=11% Similarity=-0.027 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 93 KLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 93 ~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
.|..|+........+.+.|+.++..++
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444445555554444
No 66
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=84.78 E-value=2.6 Score=24.81 Aligned_cols=29 Identities=3% Similarity=0.168 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 95 ISLLESNHQIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 95 ~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
..|+.+...|..+|..|..++..|+..|.
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 45666777788888888888888887764
No 67
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=84.42 E-value=1.6 Score=34.81 Aligned_cols=45 Identities=24% Similarity=0.248 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKV 115 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l 115 (153)
++++.-..-|..|..||..|..++.....+...|..+-..|+.++
T Consensus 13 ~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 13 QQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334444445666666666666666555555555555544444444
No 68
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=84.33 E-value=5.7 Score=24.86 Aligned_cols=43 Identities=19% Similarity=0.357 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 75 ELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQL 120 (153)
Q Consensus 75 eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~ 120 (153)
++|.+|+.|+.-...|..+++.|..++.+ -...|++++..|..
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~s---sq~KlKqRit~lE~ 44 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNA---TQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence 56777777776666666665555444333 33457777766643
No 69
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=84.30 E-value=5.4 Score=27.37 Aligned_cols=50 Identities=14% Similarity=0.329 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
++||.+|..|+.-...|..++..|..++.+ -...|++++..|...+....
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~s---sQ~KLKqRit~LE~~~~~~~ 52 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYES---MQQKLKQRLTKVEKFLKPLI 52 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccC
Confidence 467777877777777666666666544443 34568999999987777655
No 70
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=84.00 E-value=0.69 Score=32.06 Aligned_cols=30 Identities=33% Similarity=0.388 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 86 VNHQLSEKLISLLESNHQIVQENSQLKEKV 115 (153)
Q Consensus 86 eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l 115 (153)
|..-|+.+|.+|.+++..|+.||..||.-+
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345577777778888888888888888653
No 71
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=83.78 E-value=6.6 Score=25.18 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 93 KLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 93 ~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
.+..|+.....|..+|..|+.++..|+..+..+.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666777777777777766655443
No 72
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=83.69 E-value=7.9 Score=26.04 Aligned_cols=59 Identities=15% Similarity=0.122 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 68 RKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 68 RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
.-...++.++.++...+.....+...+..|+.++..|+.+-..+..++...+..|....
T Consensus 17 ~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae 75 (81)
T 1ic2_A 17 NALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777778888888888888888888888888877777776543
No 73
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=83.57 E-value=5.6 Score=27.86 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 83 VQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 83 Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
--.||..|...|..+.+....|..+|..|+.-+..++
T Consensus 44 aL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q 80 (83)
T 1uii_A 44 ALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888888888888888888888877665554
No 74
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=83.42 E-value=4.3 Score=28.17 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 83 VQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 83 Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
--.+|..|..+|..+.+....|..||..|+.-+...+
T Consensus 32 aL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~ 68 (79)
T 2zxx_A 32 ALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458999999999999999999999999877665554
No 75
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=83.32 E-value=8.7 Score=28.57 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 79 QVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKV 115 (153)
Q Consensus 79 kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l 115 (153)
+|+.|+.|+..|..++.....+...|..+|..|..++
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 3445555555555555555555555555555555544
No 76
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=83.32 E-value=11 Score=27.40 Aligned_cols=52 Identities=6% Similarity=0.056 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
++-|...++.++.....+..+.......+..+.-....|..++..|+..|.+
T Consensus 32 VdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 32 VDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666666677777777666654
No 77
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=83.06 E-value=10 Score=26.72 Aligned_cols=54 Identities=13% Similarity=0.152 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 69 KKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVI 122 (153)
Q Consensus 69 Kk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L 122 (153)
-....+.++.++..++..+..+..++..|+.++..+..+-..+..+|......|
T Consensus 21 a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kL 74 (101)
T 3u1c_A 21 ALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666666666666655555555555554444333
No 78
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=83.05 E-value=4.7 Score=27.49 Aligned_cols=53 Identities=17% Similarity=0.125 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
.+|+.++..|+...+-+...|..|......-..+...|..++..|...|.++.
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46788888888888888888887777666666676777777777766666554
No 79
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=82.85 E-value=9.9 Score=26.52 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 95 ISLLESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 95 ~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
..|+.+...+..++..|..++..|+..+.+
T Consensus 59 ~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~ 88 (93)
T 3s4r_A 59 RELRRQVDQLTNDKARVEVERDNLAEDIMR 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555554444
No 80
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=82.53 E-value=2.2 Score=35.31 Aligned_cols=39 Identities=31% Similarity=0.441 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
+.+|+.++..|...|..|...+. .+..|...|++++..|
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk-------~ar~El~~LkeElerL 94 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLK-------EARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence 44455555555555544444443 3334444444444444
No 81
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=82.47 E-value=3.1 Score=28.31 Aligned_cols=25 Identities=16% Similarity=0.068 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLI 95 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~ 95 (153)
+|+..|+.+...+..+...|..++.
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e~~ 71 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQREQR 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555544444444443333
No 82
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=82.30 E-value=2.8 Score=25.96 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKL 94 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i 94 (153)
....+||.+|..|+.||.-|++-+
T Consensus 17 ~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 17 NKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHh
Confidence 345788888888888888777654
No 83
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=82.20 E-value=2.3 Score=25.22 Aligned_cols=25 Identities=8% Similarity=0.210 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISL 97 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L 97 (153)
+..||.+|+.|-.++..|..++..|
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl 27 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARV 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5566667766666666665555544
No 84
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=81.94 E-value=3.3 Score=24.82 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 95 ISLLESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 95 ~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
..|+.+...|..+|..|..++..|+..|..
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 344555556666777777777777766653
No 85
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=81.68 E-value=1.8 Score=25.69 Aligned_cols=30 Identities=3% Similarity=0.262 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 94 LISLLESNHQIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 94 i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
+..|+.+...|..+|..|..++..|+..|.
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 345666677778888888888888877664
No 86
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=81.53 E-value=13 Score=27.16 Aligned_cols=69 Identities=16% Similarity=0.228 Sum_probs=50.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 041582 55 VISNRESARRSRMRKKKLIEELQAQVNHVQT---VNHQLSEKLISLLESNH-------QIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 55 ~lkNReSArrSR~RKk~~l~eLE~kv~~Le~---eN~~L~~~i~~L~~~~~-------~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
+..|-.+|...=..|+..+++|..++..+.. ...-|..++......+. .+..|...|..++..|+.++.
T Consensus 29 L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 29 LRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4556677778888888999999988888777 56667777777666544 466677777777777776654
No 87
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=81.39 E-value=7.7 Score=33.63 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041582 75 ELQAQVNHVQTVNHQLSEKLISL 97 (153)
Q Consensus 75 eLE~kv~~Le~eN~~L~~~i~~L 97 (153)
.|+.++..|+.+...|..++..+
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~ 29 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQ 29 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333
No 88
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=81.29 E-value=6.1 Score=27.67 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 83 VQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 83 Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
--.||..|...+..+..+...|..+|..|+.-....+
T Consensus 36 aL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q 72 (83)
T 1wlq_A 36 ALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458888999999999999999999988887655443
No 89
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=81.06 E-value=3.4 Score=28.61 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKV 115 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l 115 (153)
++|-.+|+.|..++..|..++..+++....+...+.+|.+++
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666555555555555554444444443
No 90
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=81.03 E-value=17 Score=27.98 Aligned_cols=48 Identities=13% Similarity=0.023 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
.+.+-..-++.+..|...|..++..++.+...|..||..|-.+...-.
T Consensus 90 el~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk 137 (152)
T 3a7p_A 90 VIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKT 137 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444567778888888888888888888888888888877664443
No 91
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=80.69 E-value=1.9 Score=24.57 Aligned_cols=20 Identities=40% Similarity=0.401 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041582 102 HQIVQENSQLKEKVSSLQLV 121 (153)
Q Consensus 102 ~~L~~EN~~Lr~~l~~Lq~~ 121 (153)
..|++||++|+++++.|-+.
T Consensus 9 asleaenkqlkakveellak 28 (31)
T 1p9i_A 9 ASLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666655443
No 92
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=80.49 E-value=11 Score=25.47 Aligned_cols=52 Identities=4% Similarity=0.146 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
.+.+...+..|+.+...++..+......++.|++=.-.|..++...+.+|..
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLEG 58 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEG 58 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556666777777777777777777788888888888899999998887654
No 93
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=80.24 E-value=12 Score=29.13 Aligned_cols=48 Identities=25% Similarity=0.395 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 66 RMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKV 115 (153)
Q Consensus 66 R~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l 115 (153)
|.||.. .++...+..++..+..|...+..|+.....|..+...|..+|
T Consensus 31 rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L 78 (168)
T 3o0z_A 31 RLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAIL 78 (168)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 556666666666666666666666655555555555555544
No 94
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=80.04 E-value=2.5 Score=25.05 Aligned_cols=30 Identities=3% Similarity=0.287 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 94 LISLLESNHQIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 94 i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
+..|+.+...|..+|..|..++..|+..|.
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 345666777778888888888888877654
No 95
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=79.73 E-value=3.1 Score=23.75 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLE 99 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~ 99 (153)
++.|..-+..|+.||.+|+.++++|..
T Consensus 1 mdqlnallasleaenkqlkakveella 27 (31)
T 1p9i_A 1 MDQLNALLASLEAENKQLKAKVEELLA 27 (31)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677788899999999999887643
No 96
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=79.70 E-value=13 Score=25.69 Aligned_cols=48 Identities=10% Similarity=0.139 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
..|..|+..++.-+.+-..+..++..+.+....-..|-..|+..|..|
T Consensus 27 ~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 27 HQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 345555666666666666666666666666666666666666666554
No 97
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=79.69 E-value=16 Score=31.48 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
+++..+.+.++.+...|..++...+.+...+..|+..+++++..|.
T Consensus 533 ~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 533 DAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444455555555555555555555555555555555543
No 98
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=79.40 E-value=9.3 Score=32.90 Aligned_cols=51 Identities=14% Similarity=0.109 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 69 KKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 69 Kk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
.++.+..|+.++..|+.+...+..++..+.+++...+.+-+.|-.++..|.
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 467788899999999999999999999999888888888888888888776
No 99
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=79.11 E-value=2.7 Score=34.78 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 041582 87 NHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAP 128 (153)
Q Consensus 87 N~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~ 128 (153)
...|..++..|..++..|..+.+.++.++..|+..|..+..|
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sP 97 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQP 97 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 445666667777777788889999999999999999888753
No 100
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=78.86 E-value=13 Score=25.37 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 95 ISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 95 ~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
..+......|..||..|+.++..|...+..+.
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666677777777666665554443
No 101
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=78.73 E-value=3.7 Score=24.32 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 95 ISLLESNHQIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 95 ~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
..|+.+...|..+|..|..++..|+..|.
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 44556666777788888888888877664
No 102
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=78.44 E-value=13 Score=25.19 Aligned_cols=49 Identities=18% Similarity=0.329 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 70 KKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
...|..|+..++.-+.+-..+..++..+.+....-..|-..|+..|..|
T Consensus 20 e~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 20 EGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3445555555555555556666666666666666666666666665554
No 103
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.31 E-value=21 Score=30.29 Aligned_cols=45 Identities=18% Similarity=0.199 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 82 HVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 82 ~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
.++.+...+.......+++.+.+..||..|+..+..+...+.++.
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
T 3oja_A 425 EQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASAN 469 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcc
Confidence 333444444444455555555666666666666655554444443
No 104
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=78.27 E-value=11 Score=23.99 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 75 ELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENS 109 (153)
Q Consensus 75 eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~ 109 (153)
+|..++..|...|..|...+.....+...|..+-.
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555444444444444433
No 105
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=78.24 E-value=30 Score=33.58 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041582 75 ELQAQVNHVQTVNHQLSEK 93 (153)
Q Consensus 75 eLE~kv~~Le~eN~~L~~~ 93 (153)
.|+.+++.|+.+...+.++
T Consensus 988 ~L~~e~~~l~~~~~~~~ke 1006 (1080)
T 2dfs_A 988 SLQEEIAKLRKELHQTQTE 1006 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 106
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=77.82 E-value=15 Score=25.57 Aligned_cols=51 Identities=20% Similarity=0.149 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 69 KKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 69 Kk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
-....+.++.++..++..+..+..++..|+.++..+..+-..+..++...+
T Consensus 21 a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~ 71 (101)
T 3u59_A 21 AIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQ 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666666666555555555544444443
No 107
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=77.72 E-value=8.2 Score=26.56 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 95 ISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 95 ~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
..+......|..+|..|+.++..|+
T Consensus 62 ~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 62 QKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333334445566666666666553
No 108
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=77.63 E-value=9.2 Score=30.89 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhc
Q 041582 82 HVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ---LVISDLL 126 (153)
Q Consensus 82 ~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq---~~L~d~~ 126 (153)
.--.||..|..+|..+.+....|..||..|+.-+..++ .+|..+.
T Consensus 112 eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~ 159 (209)
T 2wvr_A 112 EALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLN 159 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34468999999999999999999999998887765554 4444444
No 109
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=77.54 E-value=23 Score=34.25 Aligned_cols=22 Identities=9% Similarity=0.226 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041582 100 SNHQIVQENSQLKEKVSSLQLV 121 (153)
Q Consensus 100 ~~~~L~~EN~~Lr~~l~~Lq~~ 121 (153)
....+..+...|..++..+...
T Consensus 914 ~l~~l~~~~~~Le~~l~ele~e 935 (1184)
T 1i84_S 914 MRVRLAAKKQELEEILHEMEAR 935 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444333
No 110
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=77.34 E-value=10 Score=33.76 Aligned_cols=51 Identities=12% Similarity=0.238 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 76 LQAQVNHVQTVNHQLSEKLISLLE-----------SNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 76 LE~kv~~Le~eN~~L~~~i~~L~~-----------~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
|..+++.|+.+.+.+.++|..+.. ....|..+-+.|+.++..|...+.++.
T Consensus 82 ~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~ 143 (501)
T 1wle_A 82 LREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLE 143 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666665542 233566666666666666654444433
No 111
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=77.31 E-value=14 Score=25.06 Aligned_cols=55 Identities=7% Similarity=0.144 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 70 KKLIEELQAQVNHVQTVNHQLSEKLISL------LESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~L~~~i~~L------~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
+..++.|+.++..|+.+...|..++..- -.....+..+-..+..+|..+-.++..
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWee 81 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEY 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999998888531 134566777777777777777655543
No 112
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=76.89 E-value=11 Score=25.28 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 95 ISLLESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 95 ~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
..|+.....|..+...|+.+...|+..|..
T Consensus 50 ~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 50 QYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555666666666666555543
No 113
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=76.11 E-value=18 Score=26.21 Aligned_cols=9 Identities=44% Similarity=0.468 Sum_probs=3.5
Q ss_pred HHHHHHHHh
Q 041582 50 KRLKRVISN 58 (153)
Q Consensus 50 KR~RR~lkN 58 (153)
|=.|=|++|
T Consensus 10 KyrKAMVsn 18 (103)
T 4h22_A 10 KYKKAMVSN 18 (103)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333334443
No 114
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=76.10 E-value=13 Score=23.91 Aligned_cols=30 Identities=20% Similarity=0.213 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 94 LISLLESNHQIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 94 i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
+..|+.+...|..+|..|+.++..|+..+.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKE 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555566666666555554433
No 115
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=75.99 E-value=35 Score=28.86 Aligned_cols=53 Identities=19% Similarity=0.161 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
.++|.+.+....+......++..+.++.+.+.-+...+..++....+.+.|+.
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 424 VEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence 44444555555555556666666666666666666666666666666655554
No 116
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=75.86 E-value=8.3 Score=26.52 Aligned_cols=19 Identities=16% Similarity=0.408 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041582 104 IVQENSQLKEKVSSLQLVI 122 (153)
Q Consensus 104 L~~EN~~Lr~~l~~Lq~~L 122 (153)
+..+...|+.+-..|...|
T Consensus 64 l~~~~~~L~~~n~~L~~rl 82 (88)
T 1nkp_A 64 LISEEDLLRKRREQLKHKL 82 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 117
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=75.75 E-value=10 Score=32.79 Aligned_cols=47 Identities=21% Similarity=0.214 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
.+.+|..+++.|+.++..+..++..+.+++.....+.+.|--++..|
T Consensus 11 el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 11 EVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555666666666655555555555444444444444444
No 118
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=75.62 E-value=5.3 Score=27.04 Aligned_cols=29 Identities=21% Similarity=0.173 Sum_probs=16.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 54 RVISNRESARRSRMRKKKLIEELQAQVNH 82 (153)
Q Consensus 54 R~lkNReSArrSR~RKk~~l~eLE~kv~~ 82 (153)
|+...-.+-++-|.+=...+.+|..-|..
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~ 34 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVG 34 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccC
Confidence 34444455555555556667777665543
No 119
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=75.42 E-value=21 Score=25.88 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 70 KKLIEELQAQVNHVQTVNHQLSEKLISLL 98 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~L~~~i~~L~ 98 (153)
-..+.+|+.+|..|+.||+.|..+.....
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46778888888888888888887766543
No 120
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=75.15 E-value=4.6 Score=24.14 Aligned_cols=28 Identities=21% Similarity=0.177 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 96 SLLESNHQIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 96 ~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
.|+.+...|..+|..|..++..|+..|.
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 3444445555666666666666665554
No 121
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=75.02 E-value=5.5 Score=23.55 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041582 96 SLLESNHQIVQENSQLKEKV 115 (153)
Q Consensus 96 ~L~~~~~~L~~EN~~Lr~~l 115 (153)
..+.....|..+|..|.+++
T Consensus 11 a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHHHHHHH
Confidence 33333334444444444444
No 122
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=73.88 E-value=18 Score=24.62 Aligned_cols=55 Identities=4% Similarity=0.135 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 70 KKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
...+.++...+..++.+...++..+......++.|++=.-.|..++...+..|..
T Consensus 27 ~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLEG 81 (86)
T 1x8y_A 27 ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEG 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence 4466778888888999999999999888889999999999999999999988864
No 123
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=73.47 E-value=21 Score=25.10 Aligned_cols=55 Identities=16% Similarity=0.300 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 63 RRSRMRKKKLIEELQ----AQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSS 117 (153)
Q Consensus 63 rrSR~RKk~~l~eLE----~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~ 117 (153)
+|-+.|-..|...=. .+...|+.++..|..++..|..+...+..|-..++.++..
T Consensus 29 ~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 29 KRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555654433 2445566666666666665555444444444444444433
No 124
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=73.32 E-value=4.2 Score=28.10 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLS 91 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~ 91 (153)
++.+|+.++..|+.||.-|+
T Consensus 23 ~I~EL~e~~~qLE~EN~~Lk 42 (78)
T 1dip_A 23 QIRELVEKNSQLERENTLLK 42 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 125
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=73.32 E-value=24 Score=28.11 Aligned_cols=52 Identities=15% Similarity=0.104 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVI 122 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L 122 (153)
..+.+|+.++..+......+..++..+..+...+..+-..++.++...+..|
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444443
No 126
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=73.24 E-value=20 Score=24.86 Aligned_cols=41 Identities=22% Similarity=0.287 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 041582 78 AQVNHVQTVNHQLSEKLISLLESNHQ-----IVQENSQLKEKVSSL 118 (153)
Q Consensus 78 ~kv~~Le~eN~~L~~~i~~L~~~~~~-----L~~EN~~Lr~~l~~L 118 (153)
.+|..|+.+|..|..++..+..+... ...+-..|+.++..+
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~ 68 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQL 68 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888777654322 344555555555554
No 127
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=72.03 E-value=4.6 Score=25.81 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLIS 96 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~ 96 (153)
++.+...+..|..+|..|..++..
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~ 52 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNE 52 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 128
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=71.79 E-value=8.6 Score=22.72 Aligned_cols=29 Identities=0% Similarity=0.087 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 95 ISLLESNHQIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 95 ~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
..|..+...|..+|..|..++..|+..|.
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 44555566667777777777777777665
No 129
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=71.45 E-value=36 Score=26.87 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 75 ELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQL 111 (153)
Q Consensus 75 eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~L 111 (153)
+||..-.+|+.....+...+..+...++.+...|.-|
T Consensus 113 eLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alL 149 (189)
T 2v71_A 113 ELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFL 149 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 130
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=71.45 E-value=25 Score=25.15 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLIS 96 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~ 96 (153)
..++.|+.+...|+.++..|..++..
T Consensus 19 ~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 19 LKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888888888887777654
No 131
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=71.43 E-value=3.8 Score=33.35 Aligned_cols=81 Identities=14% Similarity=0.040 Sum_probs=37.1
Q ss_pred chhHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 46 IINEKRLKRVISNRESARRSRMRKKKLIE-------ELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 46 ~~e~KR~RR~lkNReSArrSR~RKk~~l~-------eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
.++.+|.+|.++-=.==.+.|+-+..-++ ++..+++.+..+|..+..++..|+.+.....++---.+..+..|
T Consensus 116 kP~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~ql 195 (250)
T 2ve7_C 116 CPKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQL 195 (250)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 67899999997765555555555555444 44445555555555555555544444333333322223334444
Q ss_pred HHHHHHhc
Q 041582 119 QLVISDLL 126 (153)
Q Consensus 119 q~~L~d~~ 126 (153)
-..+..+.
T Consensus 196 y~~vt~i~ 203 (250)
T 2ve7_C 196 YHQVSKIE 203 (250)
T ss_dssp HHHHHCCE
T ss_pred HHHHhhce
Confidence 44444443
No 132
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=70.74 E-value=12 Score=21.87 Aligned_cols=28 Identities=4% Similarity=0.026 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 96 SLLESNHQIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 96 ~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
.|+.+...|..+|..|..++..|+..|.
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4455555666777777777777766553
No 133
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=70.34 E-value=34 Score=26.24 Aligned_cols=57 Identities=25% Similarity=0.184 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 67 MRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 67 ~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
......+.+|+..+..-...+..|..++..|+-++..++.....|.++-..|-.+|.
T Consensus 78 ~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 78 KSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555556666666666666666666666666666555544443
No 134
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=70.32 E-value=11 Score=33.02 Aligned_cols=51 Identities=18% Similarity=0.283 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 76 LQAQVNHVQTVNHQLSEKLISL----------LESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 76 LE~kv~~Le~eN~~L~~~i~~L----------~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
+..+++.|+.+.+.+.++|..+ ..+...|..+-..|.+++..+...|.+.+
T Consensus 43 ~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 43 KLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555543 23333344444444444444444444444
No 135
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=70.25 E-value=27 Score=26.72 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCCC
Q 041582 98 LESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLEEVNGNMN 140 (153)
Q Consensus 98 ~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~~~~~n~~ 140 (153)
....+.+...|..|+.++..-...|..+..-+..|..+--+|.
T Consensus 107 r~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m~ 149 (154)
T 2ocy_A 107 RKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSLD 149 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456677778888888887777777666655555555544444
No 136
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=69.69 E-value=11 Score=30.12 Aligned_cols=36 Identities=6% Similarity=0.009 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQEN 108 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN 108 (153)
+..|..++..|..++.....++..|+++...+.++-
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344445444444444444444444444444444333
No 137
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=69.60 E-value=29 Score=25.03 Aligned_cols=47 Identities=6% Similarity=0.261 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 75 ELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLV 121 (153)
Q Consensus 75 eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~ 121 (153)
++...+..|+.+...++..+......|+.|++=.-.|..++...+.+
T Consensus 79 ~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYRkL 125 (129)
T 3tnu_B 79 DARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYRKL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444555555555555544455555555555555555555443
No 138
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=69.35 E-value=13 Score=25.15 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 041582 102 HQIVQENSQLKEKV 115 (153)
Q Consensus 102 ~~L~~EN~~Lr~~l 115 (153)
..|..+|..|+.+|
T Consensus 64 ~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 64 DQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 139
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=69.33 E-value=28 Score=24.78 Aligned_cols=74 Identities=16% Similarity=0.145 Sum_probs=50.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 041582 55 VISNRESARRSRMRKKKLIEELQAQVNHVQ---TVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAP 128 (153)
Q Consensus 55 ~lkNReSArrSR~RKk~~l~eLE~kv~~Le---~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~ 128 (153)
+..|-.+|-..=..|+..+++|...+...+ ..+.-|..++......+..=.+.-..|..+...|...|..+...
T Consensus 7 L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 7 LRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345566777777788999999998888887 56667888888887777655555555555555555555554443
No 140
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=69.29 E-value=15 Score=30.56 Aligned_cols=56 Identities=14% Similarity=0.243 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-Ccccc
Q 041582 77 QAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLA-PLRGL 132 (153)
Q Consensus 77 E~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~-~~~~~ 132 (153)
+.+++.|+.++..|..+++.|+.....+...|..-..++..-.....+.++ .|.+.
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~rl~~Lqk~~~~~~~~LGl~ie~~ 240 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANKANAERLKRLQKSADLYKDRLGLEIRKI 240 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHSCCCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHcceEEEec
Confidence 456777777777777777777666666665554444444444455555554 44444
No 141
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=69.20 E-value=19 Score=22.87 Aligned_cols=32 Identities=6% Similarity=0.034 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQ 103 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~ 103 (153)
.++.|..+|..|......|...+..|......
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ 36 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQA 36 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666665555544443
No 142
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=69.12 E-value=32 Score=25.44 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQI 104 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L 104 (153)
.+|+.++..|+..|..|..++..+..++..+
T Consensus 53 ~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 53 EELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777777676666443
No 143
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=69.08 E-value=30 Score=25.13 Aligned_cols=52 Identities=10% Similarity=0.240 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
+..|+.++..|...+..|...+..|+..++.|+...+..-.-|..+...+..
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~ 88 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQ 88 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHH
Confidence 3446666666666666666666666665555555555555555555444433
No 144
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=69.08 E-value=26 Score=24.34 Aligned_cols=40 Identities=20% Similarity=0.116 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 83 VQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVI 122 (153)
Q Consensus 83 Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L 122 (153)
|-.|...|+-+++.|..+-..-+-.-..-++++..|+.+|
T Consensus 24 L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qL 63 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQV 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3333334444444443333333333333334444444443
No 145
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=68.91 E-value=30 Score=25.02 Aligned_cols=51 Identities=10% Similarity=0.231 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVI 122 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L 122 (153)
.+.++...+..|+.+...++..+......|+.|++=.-.|..++...+.+|
T Consensus 78 ~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRkLL 128 (131)
T 3tnu_A 78 QLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRRLL 128 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344455566666666666666666666667777766667777777666655
No 146
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=68.88 E-value=2.6 Score=34.16 Aligned_cols=33 Identities=33% Similarity=0.438 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 041582 83 VQTVNHQLSEKLISLLE---SNHQIVQENSQLKEKV 115 (153)
Q Consensus 83 Le~eN~~L~~~i~~L~~---~~~~L~~EN~~Lr~~l 115 (153)
|..||.+|+.++..|+. ++..|..||.+|+..|
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL 59 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLESEVADLKKENKDLKESL 59 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555443 2345556666665544
No 147
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=68.50 E-value=27 Score=24.27 Aligned_cols=59 Identities=19% Similarity=0.271 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 58 NRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 58 NReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
|-.||-.+=.+-|+- +..++...+..|-.+..++.....++..|..|-..|+.++..|+
T Consensus 14 eLQSALeaEIqAKQ~---i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 14 ELQEALEEEVLTRQS---LSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777766666553 34556667777777777777777777777777777777776654
No 148
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=67.93 E-value=5.3 Score=25.47 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 97 LLESNHQIVQENSQLKEKVSSLQLV 121 (153)
Q Consensus 97 L~~~~~~L~~EN~~Lr~~l~~Lq~~ 121 (153)
+...+..|..||..|+.++..|...
T Consensus 32 v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 32 VRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456667778888888888777544
No 149
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=67.83 E-value=15 Score=32.73 Aligned_cols=49 Identities=8% Similarity=0.177 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 78 AQVNHVQTVNHQLSEKLIS----------LLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 78 ~kv~~Le~eN~~L~~~i~~----------L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
.+++.|+.+.+.+.++|.. |..+...|..+-..|.+++..+...|.+.+
T Consensus 47 ~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l 105 (485)
T 3qne_A 47 FDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKI 105 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433 333344444444444445555555555444
No 150
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=67.53 E-value=3.3 Score=30.47 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLI 95 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~ 95 (153)
-+++|..++..|+-||..|++++.
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999986
No 151
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=66.36 E-value=4.5 Score=22.58 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041582 82 HVQTVNHQLSEKLISLLES 100 (153)
Q Consensus 82 ~Le~eN~~L~~~i~~L~~~ 100 (153)
.|+.||..|.+++..|.++
T Consensus 4 alefendaleqkiaalkqk 22 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQK 22 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHH
Confidence 3455555555555444333
No 152
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=66.29 E-value=11 Score=27.21 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLES 100 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~ 100 (153)
+..|+.++..+...+..|...+..++..
T Consensus 45 iq~L~~el~~l~~~~~~LE~~l~e~e~~ 72 (129)
T 3tnu_B 45 IQRLRAEIDNVKKQCANLQNAIADAEQR 72 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555443
No 153
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=66.29 E-value=21 Score=23.28 Aligned_cols=37 Identities=11% Similarity=0.186 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582 89 QLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDL 125 (153)
Q Consensus 89 ~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~ 125 (153)
.|+.....|-.+.+.|+..+.+-.+++..|..+|.++
T Consensus 15 kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkqH 51 (58)
T 3a2a_A 15 RLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQH 51 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444444444455555555555555555544443
No 154
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=65.87 E-value=35 Score=24.62 Aligned_cols=44 Identities=20% Similarity=0.200 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEK 114 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~ 114 (153)
+..-..|.+++.|+.++..|...+.........+-.+|..|...
T Consensus 11 ~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~ 54 (125)
T 1joc_A 11 ERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIK 54 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 34445566777777777777777766655555566666665543
No 155
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=65.79 E-value=29 Score=23.69 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 78 AQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQL 120 (153)
Q Consensus 78 ~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~ 120 (153)
.++..|+....-=.+-.+.|-.+.-.+--||..|..++..|++
T Consensus 32 ~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 32 QEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 3334443333322333445555566777888888888877754
No 156
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=65.53 E-value=12 Score=40.43 Aligned_cols=29 Identities=7% Similarity=0.015 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 61 SARRSRMRKKKLIEELQAQVNHVQTVNHQ 89 (153)
Q Consensus 61 SArrSR~RKk~~l~eLE~kv~~Le~eN~~ 89 (153)
.|...=..+++.+.+|+.+++.|+.+.+.
T Consensus 2025 ~~~~~L~~~~~~L~~le~~l~~L~~~~~~ 2053 (3245)
T 3vkg_A 2025 ELKLKQDEIVATITALEKSIATYKEEYAT 2053 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444333
No 157
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=65.21 E-value=6.6 Score=24.70 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 70 KKLIEELQAQVNHVQTVNHQLSEKL 94 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~L~~~i 94 (153)
..|++.|+.++..|+.....|...+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999988888877776654
No 158
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=64.04 E-value=25 Score=22.32 Aligned_cols=45 Identities=7% Similarity=0.041 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 78 AQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVI 122 (153)
Q Consensus 78 ~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L 122 (153)
.++..|..+...|..++..|......|..+-..-+.+......+|
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466777777777777777777766666666666666655554444
No 159
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=61.87 E-value=37 Score=24.78 Aligned_cols=47 Identities=11% Similarity=0.182 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 69 KKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVI 122 (153)
Q Consensus 69 Kk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L 122 (153)
-..++.+|+.+|..|+.+.. .-....+....||..|+.++..|+...
T Consensus 38 ~q~~v~ql~~~i~~Le~eL~-------e~r~~~q~a~~e~e~Lr~e~~~l~~~~ 84 (120)
T 3i00_A 38 SQRVVLQLKGHVSELEADLA-------EQQHLRQQAADDCEFLRAELDELRRQR 84 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555554444 333445566778888888888775443
No 160
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=61.05 E-value=57 Score=25.82 Aligned_cols=25 Identities=12% Similarity=0.085 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISL 97 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L 97 (153)
...|..++..|+.+...|..++..+
T Consensus 141 ~~~L~~e~~~l~~~~~~l~~qlE~~ 165 (213)
T 1ik9_A 141 NEHLQKENERLLRDWNDVQGRFEKA 165 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 161
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=60.79 E-value=15 Score=21.91 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041582 94 LISLLESNHQIVQENSQLKEKVS 116 (153)
Q Consensus 94 i~~L~~~~~~L~~EN~~Lr~~l~ 116 (153)
+.....+...|+.+|+.|..++.
T Consensus 15 lAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 15 FANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455566666666666553
No 162
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=60.52 E-value=43 Score=23.89 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 64 RSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNH 102 (153)
Q Consensus 64 rSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~ 102 (153)
-||.-=..+.++|+.-+..|+.+|..=...+..++.++.
T Consensus 18 ~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akid 56 (101)
T 1d7m_A 18 VSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLD 56 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455566666666666555555555554443
No 163
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=60.27 E-value=35 Score=22.81 Aligned_cols=26 Identities=19% Similarity=0.137 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 70 KKLIEELQAQVNHVQTVNHQLSEKLI 95 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~L~~~i~ 95 (153)
..|+..|+.++..|+.++..|...+.
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666555555555555543
No 164
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=59.95 E-value=77 Score=26.59 Aligned_cols=27 Identities=11% Similarity=0.145 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 98 LESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 98 ~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
+.+.+.|+.|-..|..+|..+++.+..
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 442 QKKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666666665544
No 165
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=59.84 E-value=40 Score=30.80 Aligned_cols=25 Identities=8% Similarity=0.177 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 75 ELQAQVNHVQTVNHQLSEKLISLLE 99 (153)
Q Consensus 75 eLE~kv~~Le~eN~~L~~~i~~L~~ 99 (153)
+|+.++..|+.+...-...|..|+.
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQs 138 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQK 138 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 166
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=59.25 E-value=38 Score=22.82 Aligned_cols=57 Identities=9% Similarity=0.159 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 67 MRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 67 ~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
.+-...+.++...+..|+.+...++..+......++.|++=.-.|..++...+..|.
T Consensus 22 ~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 22 ENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLE 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 334556778888899999999999999988888999999999999999999988874
No 167
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=58.84 E-value=48 Score=23.89 Aligned_cols=37 Identities=14% Similarity=0.176 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 75 ELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQL 111 (153)
Q Consensus 75 eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~L 111 (153)
+.+.....|......|..++..+..........|..|
T Consensus 66 e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L 102 (129)
T 2fxo_A 66 DAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAEL 102 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444333333333
No 168
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=58.48 E-value=50 Score=23.98 Aligned_cols=56 Identities=21% Similarity=0.228 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLES------------NHQIVQENSQLKEKVSSLQLVISDLLA 127 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~------------~~~L~~EN~~Lr~~l~~Lq~~L~d~~~ 127 (153)
-+++|+.++...+.+...-.+++...... +..-..+-..|..++..|+.+|+|.+.
T Consensus 36 ~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 36 TLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555554444444444444333332 223445566788888888888888764
No 169
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=58.27 E-value=42 Score=23.00 Aligned_cols=19 Identities=5% Similarity=0.043 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041582 100 SNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 100 ~~~~L~~EN~~Lr~~l~~L 118 (153)
+...|..|...|+-+++.+
T Consensus 28 Ql~~Lq~Ev~~LRGqiE~~ 46 (83)
T 2xdj_A 28 QLSDNQSDIDSLRGQIQEN 46 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHH
Confidence 3333333333333333333
No 170
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=58.02 E-value=50 Score=23.81 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582 95 ISLLESNHQIVQENSQLKEKVSSLQLVISDL 125 (153)
Q Consensus 95 ~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~ 125 (153)
....+.+..|......|..++..+...|.+.
T Consensus 65 ~e~EE~~~~L~~~k~eLe~~l~el~~rleee 95 (129)
T 2fxo_A 65 ADAEERCDQLIKNKIQLEAKVKEMNKRLEDE 95 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666777777766665553
No 171
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=57.95 E-value=31 Score=21.36 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041582 80 VNHVQTVNHQLSEKLISLLES 100 (153)
Q Consensus 80 v~~Le~eN~~L~~~i~~L~~~ 100 (153)
|.+|+.+...|..+.+.|..+
T Consensus 5 vaqlenevaslenenetlkkk 25 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKK 25 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHh
Confidence 445555555444444444433
No 172
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=57.78 E-value=44 Score=26.27 Aligned_cols=31 Identities=16% Similarity=0.168 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 91 SEKLISLLESNHQIVQENSQLKEKVSSLQLV 121 (153)
Q Consensus 91 ~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~ 121 (153)
...+..|+.++..|..||..|+.+......+
T Consensus 151 ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~q 181 (184)
T 3w03_C 151 LDTIAENQAKNEHLQKENERLLRDWNDVQGR 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444555444444433
No 173
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=57.62 E-value=28 Score=28.44 Aligned_cols=57 Identities=9% Similarity=0.102 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccC
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLEEVN 136 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~~~~ 136 (153)
++++|.++..|+....+ +.+..+..+..-..+...+.+|...+..-=..|.|+-+|+
T Consensus 8 vd~~EErIs~le~rlee-------i~q~eq~~ekrik~ne~sL~dL~d~iRr~NIRIiGVPEge 64 (233)
T 2yko_A 8 CDQLEERVSAAEDEINE-------IKREGKFREKRIKRNEQSLQEIWDYVKRPNLRLIGVPESD 64 (233)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEESCCCCT
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhcccceeEeecCCCc
Confidence 34444444444444443 3333333333334444444444444433334555554443
No 174
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=56.89 E-value=36 Score=30.22 Aligned_cols=14 Identities=21% Similarity=0.356 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 041582 108 NSQLKEKVSSLQLV 121 (153)
Q Consensus 108 N~~Lr~~l~~Lq~~ 121 (153)
-..|+.++..|...
T Consensus 113 ~~~l~~~i~~le~~ 126 (484)
T 3lss_A 113 SKDLSDQVAGLAKE 126 (484)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444333
No 175
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=55.65 E-value=1.3e+02 Score=32.98 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc
Q 041582 78 AQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGL 132 (153)
Q Consensus 78 ~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~ 132 (153)
.++...+.+...|..++..|+.++..+..|...|+.++...+..|..+..-+.+|
T Consensus 2028 ~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL 2082 (3245)
T 3vkg_A 2028 LKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNL 2082 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444555555556666666666666777777777666666555555444443
No 176
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=55.62 E-value=57 Score=23.76 Aligned_cols=56 Identities=13% Similarity=0.252 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhc
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEK----LISLLESNHQIVQENSQLK-------EKVSSLQLVISDLL 126 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~----i~~L~~~~~~L~~EN~~Lr-------~~l~~Lq~~L~d~~ 126 (153)
..++.|..+|+.|..+...+..+ +..|..++..|.+|...=+ .+...|+..+....
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666665444 3344444445555544433 33455666666553
No 177
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=55.43 E-value=50 Score=23.02 Aligned_cols=53 Identities=9% Similarity=0.183 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~ 123 (153)
..+..+...+..|+.+...++..+......++.|++=.-.|..++...+.+|.
T Consensus 37 ~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrkLLE 89 (95)
T 3mov_A 37 KEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKLLE 89 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34566777777888888888888887778888888888888888888888774
No 178
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=55.29 E-value=0.18 Score=36.01 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=19.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q 041582 49 EKRLKRVISNRESARRSRMRKKK 71 (153)
Q Consensus 49 ~KR~RR~lkNReSArrSR~RKk~ 71 (153)
-+..||.-+||.+|+.+|+||..
T Consensus 65 IrdiRRRgKNkvAAqnCRKRKld 87 (90)
T 2lz1_A 65 IRDIRRRGKNKVAAQNCRKRKLE 87 (90)
T ss_dssp HHHHHHHSCSCCCCCCCSCCCCS
T ss_pred HHHHHHhhhhHHHHHHcchhhcc
Confidence 35578899999999999999853
No 179
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=54.91 E-value=50 Score=22.88 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLSEKLIS 96 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~~~i~~ 96 (153)
+.+.+|.-+|..++.|..+...++..
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKs 51 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKA 51 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555666666555555544433
No 180
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=54.84 E-value=12 Score=20.81 Aligned_cols=9 Identities=22% Similarity=0.468 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 041582 86 VNHQLSEKL 94 (153)
Q Consensus 86 eN~~L~~~i 94 (153)
.|..|++++
T Consensus 8 knarlkqei 16 (28)
T 3ra3_B 8 KNARLKQEI 16 (28)
T ss_dssp HHHHHHHHH
T ss_pred hhhHHHHHH
Confidence 333333333
No 181
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=54.82 E-value=24 Score=24.31 Aligned_cols=6 Identities=33% Similarity=0.672 Sum_probs=3.4
Q ss_pred cCcccc
Q 041582 127 APLRGL 132 (153)
Q Consensus 127 ~~~~~~ 132 (153)
+|+||-
T Consensus 50 CPvCgs 55 (112)
T 1l8d_A 50 CPVCGR 55 (112)
T ss_dssp CTTTCC
T ss_pred CCCCCC
Confidence 566653
No 182
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=54.24 E-value=57 Score=23.33 Aligned_cols=36 Identities=8% Similarity=0.158 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 84 QTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 84 e~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
+.+...|++.+....-..-.|+.+-..|++++..|+
T Consensus 68 E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLK 103 (119)
T 3ol1_A 68 ENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443344455666666666666654
No 183
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=54.22 E-value=36 Score=23.61 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 041582 103 QIVQENSQLKEKVSSL 118 (153)
Q Consensus 103 ~L~~EN~~Lr~~l~~L 118 (153)
.|+..|..|.-+++.|
T Consensus 60 ~le~~n~~l~~riqEL 75 (83)
T 4ath_A 60 KLEHANRHLLLRVQEL 75 (83)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHH
Confidence 3444444444444444
No 184
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=53.73 E-value=39 Score=21.27 Aligned_cols=41 Identities=12% Similarity=0.076 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 86 VNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 86 eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
....|+.-+..|..+...|......+.+++..|++.|.++.
T Consensus 5 ~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkqHg 45 (48)
T 3vmx_A 5 QILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQNG 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcC
Confidence 44556666666666666666666667777777777766653
No 185
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=52.96 E-value=13 Score=25.18 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 75 ELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 75 eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
+|..++..++..+..|..=+..-+..+..|+.+|+.||.++..|
T Consensus 19 el~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRl 62 (71)
T 3bbp_D 19 ELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRL 62 (71)
T ss_dssp ----------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444455556677777777777665
No 186
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=52.52 E-value=8.3 Score=24.47 Aligned_cols=21 Identities=10% Similarity=0.173 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041582 70 KKLIEELQAQVNHVQTVNHQL 90 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~L 90 (153)
..|++.||.+|..|+.....|
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478888988888888766544
No 187
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=52.51 E-value=1.1e+02 Score=26.19 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 100 SNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 100 ~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
+...+..+-+.|.+++..+...|.+.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (421)
T 1ses_A 72 RGKALGEEAKRLEEALREKEARLEALL 98 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444
No 188
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=52.24 E-value=56 Score=22.63 Aligned_cols=44 Identities=14% Similarity=0.090 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 83 VQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 83 Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
+..|....+..+..++.+....+..|..|..++..|+..+.++.
T Consensus 29 i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 29 LSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555566666777777777777777777776643
No 189
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=52.10 E-value=63 Score=23.24 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 041582 101 NHQIVQENSQLKEKVS 116 (153)
Q Consensus 101 ~~~L~~EN~~Lr~~l~ 116 (153)
...|+.+-..++..+.
T Consensus 86 i~~lE~eL~~~r~em~ 101 (131)
T 3tnu_A 86 IGSVEEQLAQLRCEME 101 (131)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 190
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=51.91 E-value=65 Score=23.33 Aligned_cols=46 Identities=15% Similarity=0.120 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582 80 VNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDL 125 (153)
Q Consensus 80 v~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~ 125 (153)
+..|+.+...|......|......|+..|..|.-.-......|.|+
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 3444444444444444444444444444444444444444444443
No 191
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=51.72 E-value=78 Score=28.13 Aligned_cols=30 Identities=13% Similarity=0.220 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 90 LSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 90 L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
|..++..|..+...|+.+-..+.+++..+-
T Consensus 76 l~~~~~~l~~~i~~le~~~~~~~~~~~~~l 105 (485)
T 3qne_A 76 LIAEKEKLSNEKKEIIEKEAEADKNLRSKI 105 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444433
No 192
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=51.23 E-value=47 Score=21.52 Aligned_cols=34 Identities=12% Similarity=0.102 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 75 ELQAQVNHVQTVNHQLSEKLISLLESNHQIVQEN 108 (153)
Q Consensus 75 eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN 108 (153)
+|...+..-..+....+.++..|....+.|..|.
T Consensus 39 el~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el 72 (77)
T 3trt_A 39 DLSEAANRNNDALRQAKQESTEYRRQVQSLTMEV 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443333333333444444444444444443
No 193
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=50.94 E-value=69 Score=24.03 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 041582 104 IVQENSQLKEKVSSL 118 (153)
Q Consensus 104 L~~EN~~Lr~~l~~L 118 (153)
.+.++..+..++..|
T Consensus 65 aE~~~~~ie~ElE~L 79 (135)
T 2e7s_A 65 AEEEADKLNKEVEDL 79 (135)
T ss_dssp HHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 194
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=50.94 E-value=81 Score=25.44 Aligned_cols=55 Identities=13% Similarity=0.178 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 47 INEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQE 107 (153)
Q Consensus 47 ~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~E 107 (153)
..+...|+-+..|..+-++ .+..|+.+++..+.|+..+..++...+++...+...
T Consensus 160 asde~Ik~yLa~R~~~lK~------kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~ 214 (228)
T 3q0x_A 160 GNDSVVKQFLAFRLSEVKG------TCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQ 214 (228)
T ss_dssp CCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777765543 557788888888888888877777665555444433
No 195
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=50.70 E-value=9.8 Score=30.85 Aligned_cols=36 Identities=11% Similarity=0.107 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 89 QLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 89 ~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
++..+.+.+..+...+..||+.+++++..|+..+.+
T Consensus 145 e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e 180 (250)
T 2ve7_C 145 EFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDE 180 (250)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHSCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444455555556666677777777666555433
No 196
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=50.26 E-value=1.1e+02 Score=26.64 Aligned_cols=68 Identities=9% Similarity=0.113 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCCCCc
Q 041582 75 ELQAQVNHVQTVNHQLSEKLISLLESNH----------QIVQENSQLKEKVSSLQLVISDLLAPLRGLEEVNGNMNRP 142 (153)
Q Consensus 75 eLE~kv~~Le~eN~~L~~~i~~L~~~~~----------~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~~~~~n~~~~ 142 (153)
+|..+...+..+...|+.+...+..+.. .|..+-+.|+.++..|...+..+..-+..+--...|..++
T Consensus 35 ~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~ 112 (455)
T 2dq0_A 35 KLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHP 112 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 3444444444455555554444444433 2334444445555555544444444444444444454443
No 197
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=49.62 E-value=63 Score=25.85 Aligned_cols=41 Identities=24% Similarity=0.403 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
.=.|.+++.|+.+|..|..++..|. ....+|..+-.++..|
T Consensus 68 SL~erQ~~~LR~r~~~Le~~L~~Li----~~A~~Ne~l~~~~~~l 108 (252)
T 3e98_A 68 SLVERQVRLLRERNIEMRHRLSQLM----DVARENDRLFDKTRRL 108 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 4445667777777777777766554 2334555555554443
No 198
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=49.13 E-value=1.4e+02 Score=26.41 Aligned_cols=62 Identities=16% Similarity=0.083 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041582 66 RMRKKKLIEELQAQVNHVQTVNHQLSE-----------KLISLLESNHQIVQENSQLKEKVSSLQLVISDLLA 127 (153)
Q Consensus 66 R~RKk~~l~eLE~kv~~Le~eN~~L~~-----------~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~ 127 (153)
|..-+..+++|..+.+.+..+...+.. ....|..+...|..+-..|.+++..+...|.+.+.
T Consensus 79 ~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~ 151 (501)
T 1wle_A 79 LRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRAL 151 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456678888888888877776653 34567777778888888888888888777777663
No 199
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=48.77 E-value=97 Score=24.43 Aligned_cols=15 Identities=13% Similarity=0.153 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 041582 76 LQAQVNHVQTVNHQL 90 (153)
Q Consensus 76 LE~kv~~Le~eN~~L 90 (153)
|..++..++.++..|
T Consensus 95 L~kEie~~~~~i~~l 109 (256)
T 3na7_A 95 LNIEEDIAKERSNQA 109 (256)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 200
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=48.76 E-value=17 Score=24.10 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041582 94 LISLLESNHQIVQENSQLK 112 (153)
Q Consensus 94 i~~L~~~~~~L~~EN~~Lr 112 (153)
|..|+.....|..++..|+
T Consensus 59 I~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 59 IQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444
No 201
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=48.67 E-value=45 Score=30.49 Aligned_cols=31 Identities=13% Similarity=0.078 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 96 SLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 96 ~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
.|++++..|..+-..-...|..||..|.+++
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~ 144 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQL 144 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443332345555555554444
No 202
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=48.13 E-value=9.9 Score=30.69 Aligned_cols=12 Identities=17% Similarity=-0.086 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 041582 91 SEKLISLLESNH 102 (153)
Q Consensus 91 ~~~i~~L~~~~~ 102 (153)
..++..|++++.
T Consensus 25 ~~eN~~Lk~e~~ 36 (255)
T 2j5u_A 25 YTENQHLKERLE 36 (255)
T ss_dssp -CTTTTHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444433333
No 203
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=47.78 E-value=78 Score=26.67 Aligned_cols=8 Identities=25% Similarity=0.235 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 041582 111 LKEKVSSL 118 (153)
Q Consensus 111 Lr~~l~~L 118 (153)
+..+|..|
T Consensus 38 ~~~~i~~l 45 (323)
T 1lwu_C 38 NQQFVTRL 45 (323)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 204
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=46.16 E-value=85 Score=22.97 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 041582 104 IVQENSQLKEKVSSLQLVISDLLA 127 (153)
Q Consensus 104 L~~EN~~Lr~~l~~Lq~~L~d~~~ 127 (153)
-..+-..|..+|..|+.+|++.+.
T Consensus 67 R~~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 67 REGVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556788888888888888773
No 205
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=45.69 E-value=1e+02 Score=24.45 Aligned_cols=30 Identities=17% Similarity=0.341 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 66 RMRKKKLIEELQAQVNHVQTVNHQLSEKLI 95 (153)
Q Consensus 66 R~RKk~~l~eLE~kv~~Le~eN~~L~~~i~ 95 (153)
+.||.+-++-|..++..|+.+-..|..++.
T Consensus 14 ~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~ 43 (190)
T 3thf_A 14 KQKMDELIKHLNQKIVSLKREQQTISEECS 43 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888899988888888877765
No 206
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=45.40 E-value=43 Score=21.19 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIV 105 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~ 105 (153)
-..||.-|..|+..|..|.+.+..|+....-|+
T Consensus 19 naklenivarlendnanlekdianlekdianle 51 (56)
T 3he4_A 19 NAKLENIVARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 345677777777777777777776665554443
No 207
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.90 E-value=42 Score=29.04 Aligned_cols=45 Identities=9% Similarity=0.175 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
.+|..++..|+.+..-|..+...++.+...+..|...+++++..|
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l 89 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRI 89 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554444444444333333334444444444433
No 208
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=44.38 E-value=90 Score=26.79 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCCCCc
Q 041582 101 NHQIVQENSQLKEKVSSLQLVISDLLAPLRGLEEVNGNMNRP 142 (153)
Q Consensus 101 ~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~~~~~n~~~~ 142 (153)
...|..+-+.|+.++..|...+..+..-+..+--...|..++
T Consensus 66 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~ 107 (421)
T 1ses_A 66 KEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWP 107 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 345556666666666666666665555544444455555554
No 209
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=43.28 E-value=78 Score=21.71 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLES------------NHQIVQENSQLKEKVSSLQLVISDLLA 127 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~------------~~~L~~EN~~Lr~~l~~Lq~~L~d~~~ 127 (153)
-+++|+.++...+.+...-..++...... +..-..+-..|..+|..|..+|+|.+.
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666666555555555444433 234455667788899999999988764
No 210
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=43.16 E-value=47 Score=19.49 Aligned_cols=18 Identities=17% Similarity=0.396 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041582 77 QAQVNHVQTVNHQLSEKL 94 (153)
Q Consensus 77 E~kv~~Le~eN~~L~~~i 94 (153)
...+++|+.+|..|..++
T Consensus 13 qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 13 QQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHH
Confidence 344444444444444444
No 211
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=42.79 E-value=83 Score=25.60 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccc
Q 041582 91 SEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLEEV 135 (153)
Q Consensus 91 ~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~~~ 135 (153)
...+..++-+....+.+-..|+.++..|...+.++...|+.|+.+
T Consensus 104 ~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~D 148 (242)
T 3c9i_A 104 TKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQAD 148 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhhh
Confidence 333444444555555666677777888877777777666666543
No 212
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=42.15 E-value=73 Score=23.15 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 89 QLSEKLISLLESNHQIVQENSQLKEKVSS 117 (153)
Q Consensus 89 ~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~ 117 (153)
.+..++..|.+++..+..+...|+.++..
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444455555544433
No 213
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=42.01 E-value=16 Score=26.79 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041582 94 LISLLESNHQIVQENSQLKEKVS 116 (153)
Q Consensus 94 i~~L~~~~~~L~~EN~~Lr~~l~ 116 (153)
++.|..+...|.-||+.||.++.
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555556666777777777664
No 214
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=41.89 E-value=92 Score=22.16 Aligned_cols=55 Identities=20% Similarity=0.206 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLES------------NHQIVQENSQLKEKVSSLQLVISDLLA 127 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~------------~~~L~~EN~~Lr~~l~~Lq~~L~d~~~ 127 (153)
+++|+.++...+.+...-..++...... +..-..+-..|..+|..|..+|++.+.
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666666665555555555444432 223445667788888888888888773
No 215
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=41.72 E-value=47 Score=22.10 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041582 106 QENSQLKEKVSSLQLVIS 123 (153)
Q Consensus 106 ~EN~~Lr~~l~~Lq~~L~ 123 (153)
.+...|+.++..+++++.
T Consensus 39 ~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 39 EEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 344455555555555543
No 216
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=41.31 E-value=49 Score=18.90 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLL 98 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~ 98 (153)
..|..+|..|...|-.-.+++..|+
T Consensus 4 qalkkrvqalkarnyaakqkvqalr 28 (33)
T 1fmh_B 4 QALKKRVQALKARNYAAKQKVQALR 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3455555555555555555544443
No 217
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=40.45 E-value=1.1e+02 Score=22.51 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041582 97 LLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 97 L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
|...+..|...|..|..++..+
T Consensus 55 L~~~~~~Le~~n~~L~~~lke~ 76 (155)
T 2oto_A 55 LEKAKQALEDQRKDLETKLKEL 76 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444443333
No 218
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=39.85 E-value=71 Score=21.23 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 69 KKKLIEELQAQVNHVQTVNHQLSEKLISLL 98 (153)
Q Consensus 69 Kk~~l~eLE~kv~~Le~eN~~L~~~i~~L~ 98 (153)
|...+.+||..+..-..++..|+.++..++
T Consensus 23 Kde~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 23 KEERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888888888877777765543
No 219
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=39.78 E-value=1.5e+02 Score=23.91 Aligned_cols=44 Identities=20% Similarity=0.366 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 76 LQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 76 LE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
|..++..++.++..|..++...+.+.+++.+.-.+-|.++..++
T Consensus 169 La~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~ 212 (228)
T 3q0x_A 169 LAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLR 212 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555554444444444444444444444
No 220
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=39.78 E-value=97 Score=21.81 Aligned_cols=28 Identities=11% Similarity=0.260 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESN 101 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~ 101 (153)
+.|+..++.++.....+..++..+....
T Consensus 98 ~~l~~~~~~l~~~l~~l~~~i~~~~~~l 125 (133)
T 1fxk_C 98 NELESTLQKMGENLRAITDIMMKLSPQA 125 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333
No 221
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=39.76 E-value=1.4e+02 Score=24.49 Aligned_cols=48 Identities=15% Similarity=0.263 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
.+.++..+++.|......+..+++.| +.+-..|.-.|..+..++.++.
T Consensus 178 EI~EID~KI~~L~~mR~~vl~RLA~l-------EqdEl~LE~eL~~V~~Rief~q 225 (242)
T 3uux_B 178 EIRDIEVEVENLRQKKEKLLGKIANI-------EQNQLLLEDNLKQIDDRLDFLE 225 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHH
Confidence 34444445555544444444444444 4444445555555555554444
No 222
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=39.52 E-value=83 Score=24.65 Aligned_cols=28 Identities=25% Similarity=0.192 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLLE 99 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~ 99 (153)
+++-+=..+..|+.+|..|.+++..|+.
T Consensus 146 lid~~ld~~~~L~~~n~~LqkeNeRL~~ 173 (184)
T 3w03_C 146 LICYCLDTIAENQAKNEHLQKENERLLR 173 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 223
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=39.47 E-value=1.3e+02 Score=23.03 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 95 ISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 95 ~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
......+..|..||..+++++.-.+
T Consensus 136 ~E~MdSFE~LkvENE~vkerl~mYR 160 (167)
T 4gkw_A 136 AENMDSFEKLSMENENLKEKIAHYR 160 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 3344456677788888888877654
No 224
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=39.25 E-value=1.3e+02 Score=22.98 Aligned_cols=40 Identities=13% Similarity=0.243 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccc
Q 041582 95 ISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLEE 134 (153)
Q Consensus 95 ~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~~ 134 (153)
..++.++..|..+-..-...+..++.+|.++..-|-.|+.
T Consensus 111 ~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m~~ 150 (154)
T 2ocy_A 111 YAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSLDN 150 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444455555555555555555666655555544444443
No 225
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=38.43 E-value=93 Score=21.24 Aligned_cols=56 Identities=18% Similarity=0.225 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 69 KKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 69 Kk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
=++.+..-..+++.|..-...|..--..|......|..|-..|...+..|+.-..+
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~E 71 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEE 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666655556666666666666666666666554443
No 226
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=38.15 E-value=1e+02 Score=26.97 Aligned_cols=11 Identities=0% Similarity=-0.206 Sum_probs=5.0
Q ss_pred HHHHHHHhHHH
Q 041582 51 RLKRVISNRES 61 (153)
Q Consensus 51 R~RR~lkNReS 61 (153)
..-.+|+|+..
T Consensus 67 ~rIe~L~~~L~ 77 (390)
T 1deq_A 67 SRINKLRDSLF 77 (390)
T ss_pred HHHHHHHHHHH
Confidence 33345555543
No 227
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=38.07 E-value=1.4e+02 Score=24.00 Aligned_cols=38 Identities=13% Similarity=0.266 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 82 HVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 82 ~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
+|+.+.-....+...|+.....+.+|+..|+..+..|.
T Consensus 34 ~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 34 QLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 33333334444445555556667788888888877764
No 228
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=38.02 E-value=2.3e+02 Score=25.74 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLA 127 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~ 127 (153)
++..|.+.+.+++|...-.+-+...++.....+.=-..+|..|.+....|.++..
T Consensus 316 ~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~ 370 (551)
T 2b5u_A 316 VEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIA 370 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHH
Confidence 3555555555555555444444444444333333334455666666666666653
No 229
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=37.59 E-value=1.4e+02 Score=22.91 Aligned_cols=11 Identities=45% Similarity=0.679 Sum_probs=5.7
Q ss_pred HHHHHHHHHHH
Q 041582 108 NSQLKEKVSSL 118 (153)
Q Consensus 108 N~~Lr~~l~~L 118 (153)
|..|+.+|-.|
T Consensus 199 n~~L~~eLp~l 209 (251)
T 2fic_A 199 NVDLQEELPSL 209 (251)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 230
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=37.26 E-value=2.1e+02 Score=25.33 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041582 101 NHQIVQENSQLKEKVSSLQLVISDLLA 127 (153)
Q Consensus 101 ~~~L~~EN~~Lr~~l~~Lq~~L~d~~~ 127 (153)
...|..+-..|.+++..+...|.+.+.
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l~ 139 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLML 139 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777888888888777777664
No 231
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=37.13 E-value=62 Score=18.81 Aligned_cols=30 Identities=43% Similarity=0.434 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 89 QLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 89 ~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
.|..++..|.++.-.|+-.-..|++++.+|
T Consensus 5 alkekvsalkeqflmlmfkvsalkekvsal 34 (36)
T 3tq2_A 5 ALKEKVSALKEQFLMLMFKVSALKEKVSAL 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455556666666666666667777766654
No 232
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=36.95 E-value=1.4e+02 Score=22.70 Aligned_cols=15 Identities=0% Similarity=0.087 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVN 87 (153)
Q Consensus 73 l~eLE~kv~~Le~eN 87 (153)
.+.++.++..|+...
T Consensus 72 Ed~yEeqIk~L~~kL 86 (155)
T 2efr_A 72 EDKYEEEIKVLSDKL 86 (155)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444443333
No 233
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=36.79 E-value=1.2e+02 Score=26.55 Aligned_cols=11 Identities=18% Similarity=0.314 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 041582 73 IEELQAQVNHV 83 (153)
Q Consensus 73 l~eLE~kv~~L 83 (153)
+++|...|..+
T Consensus 69 Ie~L~~~L~~~ 79 (390)
T 1deq_A 69 INKLRDSLFNY 79 (390)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 234
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=36.35 E-value=34 Score=25.02 Aligned_cols=26 Identities=12% Similarity=0.060 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 75 ELQAQVNHVQTVNHQLSEKLISLLES 100 (153)
Q Consensus 75 eLE~kv~~Le~eN~~L~~~i~~L~~~ 100 (153)
++..+|..|..++..|.+++..|+.+
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~ 54 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSV 54 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555554444
No 235
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.04 E-value=87 Score=27.03 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 82 HVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 82 ~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
+|......|..++..|..+...+..+...|+.++..++..+..+.
T Consensus 46 dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 46 DIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333333344444444444444444444444444445554444433
No 236
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=34.68 E-value=1.6e+02 Score=22.79 Aligned_cols=41 Identities=27% Similarity=0.372 Sum_probs=25.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 55 VISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLI 95 (153)
Q Consensus 55 ~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~ 95 (153)
+..-=+.=++.|.+-.+.+.+|+.++..|+.+...++....
T Consensus 74 LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~ 114 (168)
T 3o0z_A 74 LQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLE 114 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445666666677677777777766666666555443
No 237
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=34.55 E-value=1.1e+02 Score=20.80 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041582 88 HQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLA 127 (153)
Q Consensus 88 ~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~ 127 (153)
..|..++..+......|..+-..+..++..++..|..+++
T Consensus 73 ~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 73 AELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455555555566666666777777777777777777764
No 238
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=33.98 E-value=1e+02 Score=20.37 Aligned_cols=20 Identities=0% Similarity=0.091 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041582 103 QIVQENSQLKEKVSSLQLVI 122 (153)
Q Consensus 103 ~L~~EN~~Lr~~l~~Lq~~L 122 (153)
.|...+..|...+..+...|
T Consensus 45 ~L~kKiq~lE~eld~~ee~l 64 (81)
T 1ic2_A 45 ALQKKLKGTEDELDKYSESL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 239
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=33.78 E-value=83 Score=19.28 Aligned_cols=44 Identities=14% Similarity=0.254 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 76 LQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 76 LE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq 119 (153)
|+..+..+......+...+..+...+..+...-...+..+..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k 53 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKK 53 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444444444444444444443
No 240
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=33.68 E-value=96 Score=20.01 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041582 75 ELQAQVNHVQTVNHQLSEKLI 95 (153)
Q Consensus 75 eLE~kv~~Le~eN~~L~~~i~ 95 (153)
.|..+|..|+.+|..|.+.++
T Consensus 14 aLkDqV~eL~qe~k~m~k~lE 34 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLE 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777766666554
No 241
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=33.45 E-value=1.3e+02 Score=21.58 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 76 LQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSS 117 (153)
Q Consensus 76 LE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~ 117 (153)
|..++.....+...|..++..|......|+.|-.--=.+|..
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRd 50 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRD 50 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444455444433333333
No 242
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=33.31 E-value=1.1e+02 Score=20.68 Aligned_cols=11 Identities=9% Similarity=0.250 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 041582 105 VQENSQLKEKV 115 (153)
Q Consensus 105 ~~EN~~Lr~~l 115 (153)
..+-..|+..+
T Consensus 97 ~~~l~~lk~~l 107 (117)
T 2zqm_A 97 NEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 243
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=33.13 E-value=93 Score=19.66 Aligned_cols=46 Identities=22% Similarity=0.229 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 041582 83 VQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAP 128 (153)
Q Consensus 83 Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~ 128 (153)
|+.+...|+.-+..--+....|..-.+.|-.-+..+|..+.+.+.|
T Consensus 2 le~~I~~Lk~ai~~TNeAV~~L~~g~~~la~Av~~iQ~~IN~~i~p 47 (51)
T 3kpe_A 2 LEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLP 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566667777777767777788888889999999999999998877
No 244
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=32.55 E-value=2.1e+02 Score=23.92 Aligned_cols=16 Identities=13% Similarity=0.326 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 041582 109 SQLKEKVSSLQLVISD 124 (153)
Q Consensus 109 ~~Lr~~l~~Lq~~L~d 124 (153)
..|.+++..+...+.+
T Consensus 284 ~~~~~~~~~~~~~~~~ 299 (426)
T 1lrz_A 284 DNLQQQLDANEQKIEE 299 (426)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 245
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=32.33 E-value=1.3e+02 Score=20.91 Aligned_cols=10 Identities=40% Similarity=0.594 Sum_probs=5.0
Q ss_pred HhHHHHHHHH
Q 041582 57 SNRESARRSR 66 (153)
Q Consensus 57 kNReSArrSR 66 (153)
.-|++|+.-.
T Consensus 23 gKrEaA~Ee~ 32 (84)
T 1gmj_A 23 GKREQAEEER 32 (84)
T ss_dssp HHHHHHHHHH
T ss_pred ccHHHHhHHH
Confidence 3455555543
No 246
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=32.31 E-value=73 Score=18.21 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041582 76 LQAQVNHVQTVNHQLSEKLISLL 98 (153)
Q Consensus 76 LE~kv~~Le~eN~~L~~~i~~L~ 98 (153)
||+.+..|..-.++|..++..|+
T Consensus 4 lee~~r~l~~ivq~lq~r~drle 26 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLE 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555444
No 247
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=32.26 E-value=1.4e+02 Score=21.34 Aligned_cols=64 Identities=19% Similarity=0.253 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHH----H--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582 62 ARRSRMRKKKLIEE----L--QA-QVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDL 125 (153)
Q Consensus 62 ArrSR~RKk~~l~e----L--E~-kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~ 125 (153)
.+.-+..|+.+|.+ | .. ..+.|+.-..+|...|..|.++--.|+..-..-.-+|..|...+.|+
T Consensus 19 ~q~e~EeKkkiLaER~~pL~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 19 KQTARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 34445556677664 1 10 23456666777888888888877777777777777888888888887
No 248
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=31.51 E-value=1.2e+02 Score=20.48 Aligned_cols=48 Identities=21% Similarity=0.170 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582 78 AQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDL 125 (153)
Q Consensus 78 ~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~ 125 (153)
.....|+..+..|..+...|..++..+......|...-..|...|.++
T Consensus 35 ~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 35 RIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443333444444444444444444444
No 249
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=30.90 E-value=1.3e+02 Score=20.76 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041582 96 SLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 96 ~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
.|-.....|..|+..|+.++..|
T Consensus 50 ~Lh~~ie~l~eEi~~lk~en~eL 72 (83)
T 1uii_A 50 KLHKEIEQKDNEIARLKKENKEL 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444443333333
No 250
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=30.49 E-value=1.9e+02 Score=25.10 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 041582 109 SQLKEKVSSLQLVISDL 125 (153)
Q Consensus 109 ~~Lr~~l~~Lq~~L~d~ 125 (153)
..+..++..|...|..+
T Consensus 115 ~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 115 IMNSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 33444444444444433
No 251
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=30.48 E-value=2e+02 Score=22.82 Aligned_cols=10 Identities=30% Similarity=0.654 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 041582 75 ELQAQVNHVQ 84 (153)
Q Consensus 75 eLE~kv~~Le 84 (153)
.|+.++..+.
T Consensus 70 ~l~~e~~el~ 79 (213)
T 4ani_A 70 ELEAKLSEME 79 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 252
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=30.46 E-value=1.3e+02 Score=20.32 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 69 KKKLIEELQAQVNHVQTVNHQLSEKL 94 (153)
Q Consensus 69 Kk~~l~eLE~kv~~Le~eN~~L~~~i 94 (153)
|...+.+|+.++.....+...|..++
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555544444
No 253
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=30.44 E-value=90 Score=26.79 Aligned_cols=50 Identities=14% Similarity=0.276 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 77 QAQVNHVQTVNHQLSEKLISL----------LESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 77 E~kv~~Le~eN~~L~~~i~~L----------~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
..+++.|+.+.+.+.++|..+ ..+...+..+-+.|.+++..+...|.+.+
T Consensus 43 ~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T 2dq3_A 43 IKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTL 102 (425)
T ss_dssp HHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555432 23344455555555555555555555555
No 254
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=30.41 E-value=2.4e+02 Score=23.52 Aligned_cols=11 Identities=9% Similarity=0.323 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 041582 113 EKVSSLQLVIS 123 (153)
Q Consensus 113 ~~l~~Lq~~L~ 123 (153)
.++..|...|.
T Consensus 450 ~~~~~~~~~~~ 460 (471)
T 3mq9_A 450 GEITTLNHKLQ 460 (471)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 255
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=30.26 E-value=1.1e+02 Score=26.10 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 91 SEKLISLLESNHQIVQENSQLKEKVSSLQLV 121 (153)
Q Consensus 91 ~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~ 121 (153)
..++..+..+...|+.+-..+.+++..+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (425)
T 2dq3_A 74 QNRVKELKEEIDRLEEELRKVEEELKNTLLW 104 (425)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444444444333
No 256
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=30.23 E-value=1.1e+02 Score=19.59 Aligned_cols=55 Identities=15% Similarity=0.246 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 70 KKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD 124 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d 124 (153)
..-+.+|+.++..++.-...+..++..+......+..++..=+..+..|...+..
T Consensus 5 ~~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~ 59 (65)
T 3m0d_C 5 EKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVE 59 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3456677777777777666666666665555555544443334455555544433
No 257
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=30.20 E-value=1.4e+02 Score=20.71 Aligned_cols=42 Identities=12% Similarity=0.219 Sum_probs=21.1
Q ss_pred HHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 56 ISNRESARRSRMRKK--KLIEELQAQVNHVQTVNHQLSEKLISL 97 (153)
Q Consensus 56 lkNReSArrSR~RKk--~~l~eLE~kv~~Le~eN~~L~~~i~~L 97 (153)
...++..+-...|++ ..++.-..+++.|+.+.......|..|
T Consensus 34 frqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 34 FRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444 444444455555555555555555544
No 258
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=29.96 E-value=1.3e+02 Score=20.34 Aligned_cols=53 Identities=25% Similarity=0.255 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
.+|..++..-+.|...|..-++.|+.+.-....=|+.|..+...++....++-
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~ 58 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLE 58 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 34555555555555555555555555555555555555555555554444443
No 259
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=29.90 E-value=91 Score=22.48 Aligned_cols=20 Identities=10% Similarity=0.106 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041582 79 QVNHVQTVNHQLSEKLISLL 98 (153)
Q Consensus 79 kv~~Le~eN~~L~~~i~~L~ 98 (153)
++..|..+...|...+..|+
T Consensus 19 ei~~L~~ei~eLk~~ve~lE 38 (106)
T 4e61_A 19 TIGSLNEEIEQYKGTVSTLE 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444443
No 260
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=28.98 E-value=1e+02 Score=18.87 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 041582 105 VQENSQLKEKVSSL 118 (153)
Q Consensus 105 ~~EN~~Lr~~l~~L 118 (153)
+.|-..|..++..|
T Consensus 26 eselqalekklaal 39 (48)
T 1g6u_A 26 ESELQALEKKLAAL 39 (48)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 261
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=28.85 E-value=1.3e+02 Score=20.04 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 89 QLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 89 ~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
.|..++..+......|..+-..+..++..++..|..++
T Consensus 69 ~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~~ 106 (107)
T 1fxk_A 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEAM 106 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444445555555555556666666666555443
No 262
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=28.41 E-value=1.4e+02 Score=20.09 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 76 LQAQVNHVQTVNHQLSEKLISLLESNHQIV 105 (153)
Q Consensus 76 LE~kv~~Le~eN~~L~~~i~~L~~~~~~L~ 105 (153)
|...|..|..|+..|..++..+++.+..+.
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~ 31 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLK 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666665555555443
No 263
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=28.16 E-value=1.3e+02 Score=19.94 Aligned_cols=50 Identities=14% Similarity=0.217 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 66 RMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKV 115 (153)
Q Consensus 66 R~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l 115 (153)
|......+..||.++..++.+-.....+...|..-...|..|-..-+.-|
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLL 56 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 56 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666666666666666666666666655555443
No 264
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=28.04 E-value=1.5e+02 Score=20.46 Aligned_cols=27 Identities=11% Similarity=0.085 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLE 99 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~ 99 (153)
+..++.+...++.+...|..++..+..
T Consensus 32 ~k~~e~~~~~~E~Ei~sL~kk~~~lE~ 58 (101)
T 3u1c_A 32 KKAAEERSKQLEDDIVQLEKQLRVTED 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443333
No 265
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=27.85 E-value=2.2e+02 Score=22.34 Aligned_cols=38 Identities=24% Similarity=0.227 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQL 111 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~L 111 (153)
..|+.++..|+.+|..|...+..|..++..+..+-..+
T Consensus 135 ~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~ 172 (213)
T 1ik9_A 135 AENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEAL 172 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666666555444443
No 266
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=27.54 E-value=1.6e+02 Score=20.62 Aligned_cols=32 Identities=16% Similarity=0.331 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIV 105 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~ 105 (153)
+.|+.+++.|+.....|...+..++.+...+.
T Consensus 91 ~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~ 122 (133)
T 1fxk_C 91 ESIKSQKNELESTLQKMGENLRAITDIMMKLS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555444444444443333333
No 267
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=27.48 E-value=63 Score=22.72 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 041582 105 VQENSQLKEKVSSLQ 119 (153)
Q Consensus 105 ~~EN~~Lr~~l~~Lq 119 (153)
..+...|++++..|+
T Consensus 20 ~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 20 LSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 333334444444443
No 268
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=26.79 E-value=1.8e+02 Score=20.96 Aligned_cols=32 Identities=3% Similarity=0.210 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 90 LSEKLISLLESNHQIVQENSQLKEKVSSLQLV 121 (153)
Q Consensus 90 L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~ 121 (153)
-.+++..+..+..+|...|-.|..++..+..+
T Consensus 74 NhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl 105 (114)
T 2xzr_A 74 NHKEMKQIEDKIEEILSKIYHIENEIARIKKL 105 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33334444444444555555555444444433
No 269
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=26.64 E-value=1.5e+02 Score=23.36 Aligned_cols=18 Identities=44% Similarity=0.525 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQL 90 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L 90 (153)
+.+|+.+...|+.||..|
T Consensus 163 i~~L~a~N~hLqkENeRL 180 (186)
T 3q4f_C 163 IAENQAKNEHLQKENERL 180 (186)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 270
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=26.26 E-value=59 Score=29.13 Aligned_cols=46 Identities=15% Similarity=0.186 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L 118 (153)
..+|+.++..++.+.......+...++....|..+.+...++...|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l 382 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEEL 382 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777766666655555555555555554444444
No 271
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=26.24 E-value=1.4e+02 Score=19.49 Aligned_cols=48 Identities=17% Similarity=0.211 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 041582 70 KKLIEELQAQVNHVQTVNHQLSEKLISL---LESNHQIVQENSQLKEKVSSLQL 120 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~L~~~i~~L---~~~~~~L~~EN~~Lr~~l~~Lq~ 120 (153)
...+..|..-|..+... . ..++..| ......|..++..|..++..|+.
T Consensus 28 n~~f~~Lr~lvP~~~~~--k-~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 28 KDSFHSLRDSVPSLQGE--K-ASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHSGGGTTS--C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHCcCCCCC--C-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666544311 1 1222333 34556778888888888777764
No 272
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=25.97 E-value=1.4e+02 Score=22.26 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISL 97 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L 97 (153)
..||.++..++.....+..++..+
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~ 26 (192)
T 2gkw_A 3 GLLESQLSRHDQMLSVHDIRLADM 26 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555554444444444333
No 273
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=25.75 E-value=2.2e+02 Score=21.71 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041582 100 SNHQIVQENSQLKEKVSSLQ 119 (153)
Q Consensus 100 ~~~~L~~EN~~Lr~~l~~Lq 119 (153)
+...|..|...|+.++...+
T Consensus 114 kI~aL~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDEQR 133 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555665555444
No 274
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=25.73 E-value=62 Score=23.19 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041582 101 NHQIVQENSQLKEKVSSLQLV 121 (153)
Q Consensus 101 ~~~L~~EN~~Lr~~l~~Lq~~ 121 (153)
...|..+|..|..++..|..+
T Consensus 93 ~~~l~~~n~~L~~riqeLE~~ 113 (118)
T 4ati_A 93 QKKLEHANRHLLLRVQELEMQ 113 (118)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888877777543
No 275
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=25.44 E-value=75 Score=22.73 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041582 61 SARRSRMRKKKLIEELQAQVN 81 (153)
Q Consensus 61 SArrSR~RKk~~l~eLE~kv~ 81 (153)
+-++-|.+=...+.+|..-|.
T Consensus 34 ~ERrRR~~In~~~~~L~~lvP 54 (118)
T 4ati_A 34 IERRRRFNINDRIKELGTLIP 54 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333333333444444444443
No 276
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=25.15 E-value=3.6e+02 Score=23.84 Aligned_cols=57 Identities=16% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 70 KKLIEELQAQVNHVQTVNHQ-------LSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~-------L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
+..+++|+..|..|...-.. |...+...+.+...+...-.....+++..+..+.+.+
T Consensus 99 ~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~ 162 (464)
T 1m1j_B 99 KPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNL 162 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHH
No 277
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=24.82 E-value=2.1e+02 Score=23.14 Aligned_cols=37 Identities=8% Similarity=0.149 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 70 KKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQ 106 (153)
Q Consensus 70 k~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~ 106 (153)
.+++.+|+.+++.+.+..+....++..++..+..|..
T Consensus 12 EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d 48 (233)
T 2yko_A 12 EERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWD 48 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888888777776666654
No 278
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=24.72 E-value=2.3e+02 Score=21.59 Aligned_cols=32 Identities=13% Similarity=0.188 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 041582 94 LISLLESNHQIVQENSQLKEKVSSLQLVISDLLAP 128 (153)
Q Consensus 94 i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~ 128 (153)
+..|..+...|..+ |..+...++..|...-.|
T Consensus 115 I~aL~~Ei~~Lr~q---L~~~R~k~~~em~KeGip 146 (175)
T 3lay_A 115 INAVAKEMESLGQK---LDEQRVKRDVAMAQAGIP 146 (175)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCC
Confidence 34444444444443 344444455555544333
No 279
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=24.70 E-value=2.3e+02 Score=21.43 Aligned_cols=11 Identities=9% Similarity=0.229 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 041582 106 QENSQLKEKVS 116 (153)
Q Consensus 106 ~EN~~Lr~~l~ 116 (153)
..+..+...|.
T Consensus 119 ek~~~i~~eLd 129 (155)
T 2efr_A 119 LKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 280
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=24.63 E-value=1e+02 Score=17.35 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSEKLI 95 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~ 95 (153)
+.||.+...|+...+.|.++++
T Consensus 4 ealekkcaalesklqalekkle 25 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLE 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 281
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=24.05 E-value=44 Score=28.19 Aligned_cols=27 Identities=19% Similarity=-0.009 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEKLISLL 98 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~ 98 (153)
.+..||.+|..++.+...|...+..++
T Consensus 5 ~~~~lE~~Il~~~~~i~~L~~~l~~~~ 31 (319)
T 1fzc_C 5 EIMKYEASILTHDSSIRYLQEIYNSNN 31 (319)
T ss_dssp -----CTTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence 344555555555555555554444443
No 282
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=23.90 E-value=2e+02 Score=20.46 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582 81 NHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDL 125 (153)
Q Consensus 81 ~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~ 125 (153)
+.|+.-..+|...|..|.++--.|+..-..-.-+|..|...+.|+
T Consensus 45 ~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 45 DQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 456666667777777777776667666666666778887777776
No 283
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=23.86 E-value=2e+02 Score=20.46 Aligned_cols=47 Identities=17% Similarity=0.132 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 76 LQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVI 122 (153)
Q Consensus 76 LE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L 122 (153)
|-.+.-..+.|...|..++..|+..+.....-...|......|+...
T Consensus 9 ~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~~ 55 (125)
T 1joc_A 9 LLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKH 55 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 34444455666777777777777666655555445544444444333
No 284
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.80 E-value=1.3e+02 Score=18.33 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 75 ELQAQVNHVQTVNHQLSEKLISLLESNHQIV 105 (153)
Q Consensus 75 eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~ 105 (153)
+|-.++...-.|...-..+|..|+.+...|+
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555544444443
No 285
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=23.57 E-value=1.6e+02 Score=20.92 Aligned_cols=18 Identities=11% Similarity=0.135 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041582 79 QVNHVQTVNHQLSEKLIS 96 (153)
Q Consensus 79 kv~~Le~eN~~L~~~i~~ 96 (153)
+++....++..|..++..
T Consensus 90 ~~~~e~~~~~~L~~~i~~ 107 (117)
T 3kin_B 90 KYEKEKEKNKALKSVIQH 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333334333333
No 286
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=23.51 E-value=3.1e+02 Score=24.59 Aligned_cols=7 Identities=14% Similarity=0.036 Sum_probs=3.3
Q ss_pred HHHHhHH
Q 041582 54 RVISNRE 60 (153)
Q Consensus 54 R~lkNRe 60 (153)
..|+|+.
T Consensus 68 ~kLkn~L 74 (491)
T 1m1j_A 68 DNIRQQL 74 (491)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3455544
No 287
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=23.30 E-value=34 Score=21.88 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041582 69 KKKLIEELQAQVNHVQTVNHQL 90 (153)
Q Consensus 69 Kk~~l~eLE~kv~~Le~eN~~L 90 (153)
+..+++.|+.+|..|+.....|
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 4568888888888887655444
No 288
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=23.28 E-value=2.3e+02 Score=20.94 Aligned_cols=54 Identities=13% Similarity=0.165 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582 73 IEELQAQVNHVQT-VNHQLSEKLISLL--------ESNHQIVQENSQLKEKVSSLQLVISDLL 126 (153)
Q Consensus 73 l~eLE~kv~~Le~-eN~~L~~~i~~L~--------~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~ 126 (153)
++.|+.+++.|.. +...+...+.... ..|+....+...+..++..|...|..+.
T Consensus 11 ~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L~~A~ 73 (158)
T 2p4v_A 11 YEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLK 73 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCE
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhCe
Confidence 4566777777743 5555566665554 3456667777888888999988887766
No 289
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=23.09 E-value=2.7e+02 Score=21.64 Aligned_cols=19 Identities=16% Similarity=0.122 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041582 76 LQAQVNHVQTVNHQLSEKL 94 (153)
Q Consensus 76 LE~kv~~Le~eN~~L~~~i 94 (153)
-+..|..|+.++..|..++
T Consensus 133 AertV~kLqkeiD~LEDeL 151 (175)
T 3mud_A 133 CLDTTAKNEKSIDDLEEKV 151 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 290
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=22.75 E-value=1.5e+02 Score=20.36 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=8.2
Q ss_pred HHHHHHHHHH-----HHHHHhc--cCcccccc
Q 041582 110 QLKEKVSSLQ-----LVISDLL--APLRGLEE 134 (153)
Q Consensus 110 ~Lr~~l~~Lq-----~~L~d~~--~~~~~~~~ 134 (153)
.|..+|+.++ .++..++ .|++++-+
T Consensus 44 sLQvqLE~IRqadt~~qvr~Il~e~~l~di~~ 75 (79)
T 1tu3_F 44 TLQVQLERIRQADSLERIRAILNDTKLTDINQ 75 (79)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHTC---------
T ss_pred HHHHHHHHHHhhhhHHHHHHHHccCccchHhh
Confidence 4555555554 2344444 35555443
No 291
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=22.42 E-value=1.6e+02 Score=20.77 Aligned_cols=31 Identities=16% Similarity=0.175 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 74 EELQAQVNHVQTVNHQLSEKLISLLESNHQI 104 (153)
Q Consensus 74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L 104 (153)
..|..++..|..+-..|-..+..+++....+
T Consensus 9 ~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~l 39 (106)
T 2aze_B 9 EGLTQDLRQLQESEQQLDHLMNICTTQLRLL 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333333
No 292
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=22.37 E-value=2e+02 Score=20.05 Aligned_cols=52 Identities=21% Similarity=0.241 Sum_probs=33.3
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582 74 EELQAQVN-HVQTVNHQLSEKLISLLE--SNHQIVQENSQLKEKVSSLQLVISDL 125 (153)
Q Consensus 74 ~eLE~kv~-~Le~eN~~L~~~i~~L~~--~~~~L~~EN~~Lr~~l~~Lq~~L~d~ 125 (153)
.+|...|+ .|.-....|..++..|.. +...|+++=..|...+..++....+.
T Consensus 36 ~~LR~~l~~~l~~~~~~L~k~~~~l~~l~qkeRL~~dF~~l~~~fQ~~qr~y~ek 90 (97)
T 1hs7_A 36 KELRYKIETELIPNCTSVRDKIESNILIHQNGKLSADFKNLKTKYQSLQQSYNQR 90 (97)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHSTHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666 666666666666664443 55666777777777777776665544
No 293
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=22.30 E-value=2.5e+02 Score=22.63 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQE---NSQLK 112 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~E---N~~Lr 112 (153)
+++++..+..+..+...|..++..|..+...|... -..|.
T Consensus 94 ~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~ 136 (357)
T 3rrk_A 94 LEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLA 136 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
No 294
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=21.54 E-value=1.8e+02 Score=19.15 Aligned_cols=33 Identities=9% Similarity=-0.048 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIV 105 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~ 105 (153)
.+++..++..|+.|..-.-.++....--++...
T Consensus 18 kdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e 50 (75)
T 3mtu_A 18 KENALDRAEQAEADKDFYFGKLRNIELICQENE 50 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344555555555555544445555444444433
No 295
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=21.51 E-value=2.3e+02 Score=20.40 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041582 72 LIEELQAQVNHVQTVNHQLSEK 93 (153)
Q Consensus 72 ~l~eLE~kv~~Le~eN~~L~~~ 93 (153)
.+.+|+.+|+.++..+.+|+.-
T Consensus 5 e~~~l~~qi~~~ekr~~RLKev 26 (123)
T 4dzo_A 5 EVAELKKQVESAELKNQRLKEV 26 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555544443
No 296
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=20.83 E-value=1.1e+02 Score=19.63 Aligned_cols=21 Identities=5% Similarity=0.194 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041582 71 KLIEELQAQVNHVQTVNHQLS 91 (153)
Q Consensus 71 ~~l~eLE~kv~~Le~eN~~L~ 91 (153)
.|+..|+.++..|+.....|.
T Consensus 45 ~~~~~L~~r~~~le~~l~~l~ 65 (89)
T 3coq_A 45 AHLTEVESRLERLEQLFLLIF 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 478888888888887666553
No 297
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=20.06 E-value=2.2e+02 Score=19.54 Aligned_cols=50 Identities=12% Similarity=0.234 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582 73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVI 122 (153)
Q Consensus 73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L 122 (153)
+..++.+...|..+-..++.....+..+...+..+-..|..++...+.+|
T Consensus 41 l~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qL 90 (96)
T 3q8t_A 41 LEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQL 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344443334444444444444444444445555444444444
Done!