Query 041583
Match_columns 586
No_of_seqs 231 out of 705
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 08:39:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041583.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041583hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1844 PHD Zn-finger proteins 99.9 4.2E-29 9.1E-34 269.2 3.7 420 90-547 13-507 (508)
2 PF00628 PHD: PHD-finger; Int 98.5 1.4E-08 3E-13 78.3 -0.2 47 536-583 1-50 (51)
3 smart00249 PHD PHD zinc finger 98.4 1.8E-07 4E-12 68.8 3.7 44 537-581 2-47 (47)
4 KOG1973 Chromatin remodeling p 98.3 4.5E-07 9.8E-12 93.2 3.1 51 530-584 215-268 (274)
5 KOG1844 PHD Zn-finger proteins 98.2 6.5E-07 1.4E-11 97.6 2.5 53 531-585 83-136 (508)
6 COG5034 TNG2 Chromatin remodel 97.9 5.5E-06 1.2E-10 84.4 3.3 52 528-583 215-269 (271)
7 PF13831 PHD_2: PHD-finger; PD 97.0 0.00013 2.8E-09 54.1 -0.7 34 548-582 3-36 (36)
8 KOG4323 Polycomb-like PHD Zn-f 96.8 0.00051 1.1E-08 75.5 2.0 51 534-585 171-225 (464)
9 KOG0954 PHD finger protein [Ge 95.9 0.0044 9.5E-08 71.2 2.5 51 532-584 269-321 (893)
10 KOG0825 PHD Zn-finger protein 95.0 0.013 2.9E-07 67.8 2.3 53 530-583 211-265 (1134)
11 KOG0957 PHD finger protein [Ge 94.4 0.03 6.6E-07 62.3 3.3 56 529-584 115-179 (707)
12 KOG1632 Uncharacterized PHD Zn 94.3 0.016 3.5E-07 62.1 1.0 49 536-584 62-113 (345)
13 KOG1632 Uncharacterized PHD Zn 92.2 0.016 3.5E-07 62.0 -3.0 54 530-583 235-294 (345)
14 KOG1244 Predicted transcriptio 90.8 0.14 3E-06 53.7 2.1 48 536-584 283-331 (336)
15 KOG0955 PHD finger protein BR1 89.7 0.25 5.3E-06 59.8 3.2 51 530-583 215-268 (1051)
16 COG5141 PHD zinc finger-contai 89.2 0.16 3.6E-06 56.7 1.2 48 532-582 191-241 (669)
17 KOG1512 PHD Zn-finger protein 85.9 0.39 8.5E-06 50.7 1.6 65 511-579 287-357 (381)
18 PF07227 DUF1423: Protein of u 85.9 0.67 1.5E-05 51.4 3.4 47 538-584 133-192 (446)
19 KOG4443 Putative transcription 82.7 0.21 4.5E-06 57.4 -2.1 49 535-583 146-201 (694)
20 KOG1245 Chromatin remodeling c 79.9 0.43 9.2E-06 59.6 -1.0 53 531-584 1105-1158(1404)
21 PF07496 zf-CW: CW-type Zinc F 78.4 1 2.2E-05 35.6 1.0 32 548-580 2-34 (50)
22 KOG0957 PHD finger protein [Ge 78.2 1.1 2.5E-05 50.4 1.7 51 532-583 542-597 (707)
23 KOG2752 Uncharacterized conser 73.7 2.1 4.5E-05 45.9 2.1 35 533-567 127-167 (345)
24 PF14446 Prok-RING_1: Prokaryo 71.9 2.4 5.2E-05 34.7 1.6 33 533-565 4-37 (54)
25 KOG0383 Predicted helicase [Ge 70.1 2.7 5.8E-05 49.4 2.1 45 535-583 48-93 (696)
26 KOG4299 PHD Zn-finger protein 67.7 3.2 7E-05 47.8 2.1 49 534-583 253-304 (613)
27 PF05207 zf-CSL: CSL zinc fing 64.5 2.9 6.2E-05 33.8 0.7 37 524-560 8-51 (55)
28 PF10407 Cytokin_check_N: Cdc1 63.3 17 0.00037 31.4 5.1 36 462-497 6-41 (73)
29 PF07649 C1_3: C1-like domain; 63.3 2.7 5.8E-05 29.6 0.3 28 536-564 2-30 (30)
30 KOG2626 Histone H3 (Lys4) meth 57.8 8.5 0.00019 43.9 3.1 54 531-584 17-76 (544)
31 PF13832 zf-HC5HC2H_2: PHD-zin 52.4 6.8 0.00015 34.7 1.0 34 531-567 52-88 (110)
32 COG5271 MDN1 AAA ATPase contai 48.3 11 0.00025 48.8 2.3 31 254-284 1053-1094(4600)
33 PLN02400 cellulose synthase 47.1 22 0.00047 43.9 4.4 46 535-583 37-86 (1085)
34 TIGR00311 aIF-2beta translatio 46.0 8.9 0.00019 36.4 0.8 93 456-558 24-127 (133)
35 KOG2713 Mitochondrial tryptoph 44.1 27 0.00057 37.7 3.9 70 252-336 254-325 (347)
36 cd05030 calgranulins Calgranul 41.8 50 0.0011 28.4 4.7 53 283-335 2-61 (88)
37 PRK03988 translation initiatio 41.6 11 0.00024 35.9 0.7 94 456-559 29-133 (138)
38 PLN02436 cellulose synthase A 39.2 29 0.00064 42.8 3.8 47 535-584 37-87 (1094)
39 TIGR03638 cas1_ECOLI CRISPR-as 38.7 55 0.0012 34.1 5.3 43 286-335 223-265 (269)
40 TIGR03853 matur_matur probable 37.1 49 0.0011 29.1 3.8 33 305-339 15-61 (77)
41 PF03107 C1_2: C1 domain; Int 36.9 28 0.00061 24.6 2.0 27 536-564 2-30 (30)
42 PLN02638 cellulose synthase A 36.9 23 0.00049 43.8 2.4 46 535-583 18-67 (1079)
43 PF14569 zf-UDP: Zinc-binding 35.5 7.7 0.00017 34.1 -1.2 46 535-583 10-59 (80)
44 cd05025 S-100A1 S-100A1: S-100 34.5 81 0.0018 26.9 4.9 53 282-335 2-62 (92)
45 PF01506 HCV_NS5a: Hepatitis C 34.5 23 0.00051 24.4 1.2 14 166-179 4-17 (23)
46 KOG4443 Putative transcription 34.3 25 0.00055 41.2 2.2 47 534-581 68-115 (694)
47 PLN02915 cellulose synthase A 32.9 29 0.00062 42.8 2.4 47 535-584 16-66 (1044)
48 PRK12336 translation initiatio 31.9 20 0.00044 35.9 0.8 97 456-562 25-132 (201)
49 TIGR00043 metalloprotein, YbeY 31.2 12 0.00027 34.0 -0.7 14 135-148 77-90 (110)
50 cd01791 Ubl5 UBL5 ubiquitin-li 30.7 47 0.001 28.0 2.7 20 463-482 16-35 (73)
51 PLN02189 cellulose synthase 29.0 36 0.00078 42.0 2.4 47 535-584 35-85 (1040)
52 KOG0240 Kinesin (SMY1 subfamil 28.4 1.7E+02 0.0038 34.2 7.4 79 433-518 6-105 (607)
53 cd01804 midnolin_N Ubiquitin-l 28.4 48 0.001 27.9 2.4 20 463-482 16-35 (78)
54 cd05492 Bromo_ZMYND11 Bromodom 27.7 63 0.0014 29.7 3.2 42 377-420 59-101 (109)
55 KOG3277 Uncharacterized conser 27.5 37 0.00081 33.4 1.8 26 532-557 77-112 (165)
56 PF10367 Vps39_2: Vacuolar sor 26.9 14 0.0003 31.9 -1.2 95 457-565 11-108 (109)
57 PRK09706 transcriptional repre 26.3 1.2E+02 0.0027 27.8 4.9 89 166-269 3-103 (135)
58 PF13901 DUF4206: Domain of un 24.7 54 0.0012 32.8 2.4 39 535-583 153-197 (202)
59 PF04216 FdhE: Protein involve 24.5 27 0.00059 36.4 0.3 49 535-583 173-246 (290)
60 KOG2041 WD40 repeat protein [G 24.3 69 0.0015 38.5 3.4 51 531-584 1114-1165(1189)
61 COG1120 FepC ABC-type cobalami 23.6 65 0.0014 33.8 2.8 96 134-244 28-133 (258)
62 PRK00016 metal-binding heat sh 23.3 24 0.00052 34.2 -0.4 14 135-148 117-130 (159)
63 cd01769 UBL Ubiquitin-like dom 23.1 80 0.0017 24.5 2.7 20 463-482 12-31 (69)
64 cd01792 ISG15_repeat1 ISG15 ub 23.0 73 0.0016 26.8 2.5 20 464-483 18-37 (80)
65 PF10764 Gin: Inhibitor of sig 23.0 37 0.00081 26.8 0.7 12 574-585 17-28 (46)
66 PF13771 zf-HC5HC2H: PHD-like 23.0 39 0.00084 28.7 0.9 35 531-568 33-70 (90)
67 COG3046 Uncharacterized protei 22.9 58 0.0013 36.8 2.4 41 453-493 182-222 (505)
68 PF13639 zf-RING_2: Ring finge 22.8 10 0.00022 28.4 -2.5 41 537-582 3-44 (44)
69 PF10281 Ish1: Putative stress 22.7 1.4E+02 0.003 22.1 3.7 36 278-321 3-38 (38)
70 PF02130 UPF0054: Uncharacteri 22.5 21 0.00046 33.8 -0.9 14 135-148 112-125 (145)
71 cd00730 rubredoxin Rubredoxin; 21.7 67 0.0015 25.8 1.9 13 571-583 30-42 (50)
72 PRK02268 hypothetical protein; 21.6 58 0.0013 31.4 1.8 28 209-236 111-138 (141)
73 COG3685 Uncharacterized protei 21.3 89 0.0019 31.1 3.1 64 269-338 2-69 (167)
No 1
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=99.95 E-value=4.2e-29 Score=269.17 Aligned_cols=420 Identities=25% Similarity=0.334 Sum_probs=289.4
Q ss_pred CCCCcceEecCCCCcccCcceEEEeecCCcccCcccccccccCcccccceeeccCccceEeeecCCCCCcccchhhhhhh
Q 041583 90 PFCNLCRCVGWSHHFVCKRRYHFIIPQHEKWIKPLNMDTLEHCDHILHGVVHCNGFGHLLSISGSKDGSNYLCEEQIMNL 169 (586)
Q Consensus 90 ~~Cd~Cr~vGW~~H~V~~krYHFIip~~~~~~~~~~~~~~~~~~HllHGviH~NGfGHLl~vnG~eggS~~lsG~~iM~~ 169 (586)
++|++|++.||+.|.+|+++||||||++..+..+....+++.++|.+||.+|+||+||++++||+|.|+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---------- 82 (508)
T KOG1844|consen 13 PRCSHCCKFGWSPHLVANKKYEHIIPADAELFEESTSQSNEPSTASPHGTAHEPGKGVLLSLNGSEAGSE---------- 82 (508)
T ss_pred cccccccccCCcccccccccccccccCCcccccCCchhhccccccccccccccCCCCccccccccccccC----------
Confidence 9999999999999999999999999999999888888899999999999999999999999999999998
Q ss_pred HHHHhhhhhcceeEEeecccccccchhhhhccccCCccCCccccccccCCCCCCH-HHHHHHHHHhhccchhhhhcccCC
Q 041583 170 FDHLCTILHTQKISVHDVLVKRCMDLRLLHCVTYGCSWFGKWDYKFCHGSFGVTE-HKYNRAIQILSSLELKRIIHDFGN 248 (586)
Q Consensus 170 WDrlC~~L~~RkVSv~DvSkK~~mdlRlLh~va~g~~W~g~WGY~fg~Gsfgvt~-~~Y~~Aie~lss~pL~~~~~~~~~ 248 (586)
+++++..|.+.+..| |+++.+++|+++|+|+||.|+|+.+. +.|..++...++++++........
T Consensus 83 ---------~~~~~~c~c~~~~~~-----~g~~i~c~~c~~Wqh~~C~g~~~~~~p~~y~c~~c~~~~~~~~~~~~~~~~ 148 (508)
T KOG1844|consen 83 ---------AREISRCDCGLEDDM-----EGLMIQCDWCGRWQHKICCGSFKSTKPDKYVCEICTPRNKEVERALALKRQ 148 (508)
T ss_pred ---------cCcccccccccccCC-----CceeeCCcccCcccCceeeeecCCCCchhceeeeeccccccchhhhhcccc
Confidence 899999999999999 99999999999999999999999999 999999999999999977776666
Q ss_pred CCcccchhhhhhhccccccccccchhhhhc----------------------------cchhhHHHHHHHHHHHHH----
Q 041583 249 TGRGRVIGKIIHLYMNASDTQLITISDLLQ----------------------------WGVQRLEQAAKAIFTTLE---- 296 (586)
Q Consensus 249 ~~~~~~~~~ii~~Y~~lS~~~L~t~~dL~r----------------------------Ws~~r~~~A~~~~v~vLr---- 296 (586)
.........+..+|++.+...+.+..++++ ++..++...+.-..++++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (508)
T KOG1844|consen 149 SIEPEVLEPIRSTYRSLSQDSLDTTSDLKSFMLALISLSTKVKDHASDPELPKDRNISPSSTPFRCSTGNDEDIKKDSSD 228 (508)
T ss_pred cccccccCccchhhhhhcccCCCchHHHHHHHhhccccCccccccccCcccccccccccccccccccccchhhhcccccc
Confidence 666778888888999999877766666655 222222222222222211
Q ss_pred -------------------------------hhccccCCCCccchHHHHHHHhcccCCcchHHHHHhhcCCeeccCcEEE
Q 041583 297 -------------------------------QRNASINSKAKISRRELRDEARKKIGDTGLLDFMIKHIHKIILDNRIVH 345 (586)
Q Consensus 297 -------------------------------~~~a~~~~~~wvsr~~LR~aark~IGdtgLLD~~LK~l~~~~vg~~vvr 345 (586)
.... ....|+....+|...+..|+|++..+.......+...++..++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (508)
T KOG1844|consen 229 PDSDAVTSGSLGPELKELLIRRREDAGSFLLSNEV--KDQQQVVCVRVRTSCRPDIEDKEYSNEDNQGESDVLNGDVSSR 306 (508)
T ss_pred ccccccccccccchhhHHHHhhhhhhhhhhhhhhc--cccccccceeeeeccCcccccccchhhccccccccccCccccc
Confidence 1110 1144555555555555555555555555555555555555555
Q ss_pred EeecCCCCceeEEeccCCCcccccCCCCCc----------ccccCCCChhhHHHHHHHHHHhhhcCCCCcchHHHHHHHh
Q 041583 346 RKINPATKLAEFSLEDDANGEVIQTRTEPE----------YHTSTLMPGQDVYADVLTLYKNVLLGYPESHTVSLAARAI 415 (586)
Q Consensus 346 rr~Np~T~~lEy~Le~~~~~~~~~~~~~~~----------~~~~~~~~~~~v~~Dl~~lY~~vL~~yp~~~~~~~Aa~~i 415 (586)
+..++.+..+.+.+-..+.....+....-+ ...-...+ .-+..|+..++..++..+++......+.+.+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (508)
T KOG1844|consen 307 KSVHSKGRKLPQYLNELDFGNKAENRFQLEKRSLGVAKPKPSFTEHSP-QYVGSDLLGLSTRLPLVEPHSDRRKVASQLI 385 (508)
T ss_pred cccccccccccccccccchhhhcccchhhhhhchhhhcccccccCCCc-cccccccccccccceeeccCCcccccccccc
Confidence 555555444444333332211111110000 00001112 4456666677777666677777777888999
Q ss_pred hcccccccccCccCCCCCcceEEEEEEeeCcchhhhccCCCCCCCceeeeCCCCCHHHHHHHHHhhhhhhhhceeeeeee
Q 041583 416 LDCKNFAKEWQFKESEDDNLMRLKCRVSPSYNELATQLTRPLPPAELIVAPKDVTVDELKLIVECSLRDTYCMMEKVVVK 495 (586)
Q Consensus 416 LD~K~fvK~y~~~~~~~~~~l~~~c~v~~~~~~~~~~~~~~~pP~Elv~lp~~aTv~eLK~ea~r~frD~Y~~~r~f~~~ 495 (586)
++.|.+.+.|.... ...-|.+-+...+...+.....+++.+...|+.+|+..++..+...+.+.| ....+. .
T Consensus 386 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~ 457 (508)
T KOG1844|consen 386 LRAKRFDKAVRGMH------KLRAIRIAPNLEEVRPEAATVSDKPILKEKPPEATSASLKSPEVEELLGSY-ETTRIR-K 457 (508)
T ss_pred cccccccccccchh------hhhhcccCchhhhhhhhhhhccCCccccccCcccccccccchhHHHhhcce-eeeccC-c
Confidence 99999999855322 333344444333332222345889999999999999999988888888888 111111 0
Q ss_pred eeecccccceeccc-eeEEeccccCccccccccCCCCCCcEEeecCCCCCCCC
Q 041583 496 EIKMGQNQVFWGAG-DVWVRGWGLDLDTELRFEGGADDWTVDCVCGAKDDDGE 547 (586)
Q Consensus 496 ~l~~g~e~g~v~sg-~v~vrG~~~~~e~~~~~e~g~d~~~VrCiCG~~dDDGe 547 (586)
+. ..+.....+ .+.+.+...+.....+.+.+...|.+.|.|+..++|++
T Consensus 458 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (508)
T KOG1844|consen 458 EL---DKKNLKGECPRFEVKSFTRHEEKEVKDERPKDSRRVDCKCGATDDDGE 507 (508)
T ss_pred ch---hhccccccceeeeeeeeehhhhhhhhhhCCchhhhHhhhccCcCCCCC
Confidence 00 002222234 34444444445566677888899999999999998885
No 2
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.54 E-value=1.4e-08 Score=78.34 Aligned_cols=47 Identities=32% Similarity=0.834 Sum_probs=38.1
Q ss_pred Ee-ecCCCCCCCCCeEeecCCCccccccccccCCCCC--CCCceecCCCCC
Q 041583 536 DC-VCGAKDDDGERMVACDICQVWQHTRCNSIADNEV--VPSVFKCRACTA 583 (586)
Q Consensus 536 rC-iCG~~dDDGe~MIqCD~C~vWQH~~CvGI~~~~~--~p~~f~C~~C~~ 583 (586)
+| +||.. ++++.||+||.|+.|+|..|++++.... ....|+|+.|.+
T Consensus 1 ~C~vC~~~-~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQS-DDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSS-CTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCc-CCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 58 99995 4455999999999999999999986522 235999999864
No 3
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=98.26 E-value=4.5e-07 Score=93.22 Aligned_cols=51 Identities=27% Similarity=0.704 Sum_probs=41.7
Q ss_pred CCCCcEEeecCCCCCCCCCeEeecC--CC-ccccccccccCCCCCCCCceecCCCCCC
Q 041583 530 ADDWTVDCVCGAKDDDGERMVACDI--CQ-VWQHTRCNSIADNEVVPSVFKCRACTAA 584 (586)
Q Consensus 530 ~d~~~VrCiCG~~dDDGe~MIqCD~--C~-vWQH~~CvGI~~~~~~p~~f~C~~C~~~ 584 (586)
+.+...+|+|.. ..-| .||.||. |. .|+|..||||... ....|||+.|...
T Consensus 215 d~~e~~yC~Cnq-vsyg-~Mi~CDn~~C~~eWFH~~CVGL~~~--PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 215 DPDEPTYCICNQ-VSYG-KMIGCDNPGCPIEWFHFTCVGLKTK--PKGKWYCPRCKAE 268 (274)
T ss_pred CCCCCEEEEecc-cccc-cccccCCCCCCcceEEEeccccccC--CCCcccchhhhhh
Confidence 456889999994 4555 7999998 99 9999999999843 2467999999864
No 5
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=98.19 E-value=6.5e-07 Score=97.62 Aligned_cols=53 Identities=34% Similarity=0.787 Sum_probs=47.3
Q ss_pred CCCcEEeecCCCCC-CCCCeEeecCCCccccccccccCCCCCCCCceecCCCCCCC
Q 041583 531 DDWTVDCVCGAKDD-DGERMVACDICQVWQHTRCNSIADNEVVPSVFKCRACTAAV 585 (586)
Q Consensus 531 d~~~VrCiCG~~dD-DGe~MIqCD~C~vWQH~~CvGI~~~~~~p~~f~C~~C~~~l 585 (586)
..++++|+||..++ +| +||+|+.|..|||.-|+|+..... |+.|.|..|.++.
T Consensus 83 ~~~~~~c~c~~~~~~~g-~~i~c~~c~~Wqh~~C~g~~~~~~-p~~y~c~~c~~~~ 136 (508)
T KOG1844|consen 83 AREISRCDCGLEDDMEG-LMIQCDWCGRWQHKICCGSFKSTK-PDKYVCEICTPRN 136 (508)
T ss_pred cCcccccccccccCCCc-eeeCCcccCcccCceeeeecCCCC-chhceeeeecccc
Confidence 46889999999988 66 999999999999999999987644 9999999998753
No 6
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.94 E-value=5.5e-06 Score=84.41 Aligned_cols=52 Identities=27% Similarity=0.704 Sum_probs=42.4
Q ss_pred CCCCCCcEEeecCCCCCCCCCeEeecC--CC-ccccccccccCCCCCCCCceecCCCCC
Q 041583 528 GGADDWTVDCVCGAKDDDGERMVACDI--CQ-VWQHTRCNSIADNEVVPSVFKCRACTA 583 (586)
Q Consensus 528 ~g~d~~~VrCiCG~~dDDGe~MIqCD~--C~-vWQH~~CvGI~~~~~~p~~f~C~~C~~ 583 (586)
+.+++..++|-|..- --| .||.||+ |. .|+|..|||+... .--.|||+.|..
T Consensus 215 d~se~e~lYCfCqqv-SyG-qMVaCDn~nCkrEWFH~~CVGLk~p--PKG~WYC~eCk~ 269 (271)
T COG5034 215 DNSEGEELYCFCQQV-SYG-QMVACDNANCKREWFHLECVGLKEP--PKGKWYCPECKK 269 (271)
T ss_pred ccccCceeEEEeccc-ccc-cceecCCCCCchhheeccccccCCC--CCCcEeCHHhHh
Confidence 334778999999984 567 7999995 98 8999999999732 247999999975
No 7
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=96.98 E-value=0.00013 Score=54.15 Aligned_cols=34 Identities=24% Similarity=0.599 Sum_probs=19.6
Q ss_pred CeEeecCCCccccccccccCCCCCCCCceecCCCC
Q 041583 548 RMVACDICQVWQHTRCNSIADNEVVPSVFKCRACT 582 (586)
Q Consensus 548 ~MIqCD~C~vWQH~~CvGI~~~~~~p~~f~C~~C~ 582 (586)
+||+|++|++..|..|+||... +..+.|+|..|+
T Consensus 3 ~ll~C~~C~v~VH~~CYGv~~~-~~~~~W~C~~C~ 36 (36)
T PF13831_consen 3 PLLFCDNCNVAVHQSCYGVSEV-PDGDDWLCDRCE 36 (36)
T ss_dssp EEEE-SSS--EEEHHHHT-SS---SS-----HHH-
T ss_pred ceEEeCCCCCcCChhhCCcccC-CCCCcEECCcCC
Confidence 7999999999999999999865 334459999884
No 8
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=96.83 E-value=0.00051 Score=75.54 Aligned_cols=51 Identities=27% Similarity=0.677 Sum_probs=40.4
Q ss_pred cEEeecCCCCCCCCCeEeecCCCccccccccccCCCCC---C-CCceecCCCCCCC
Q 041583 534 TVDCVCGAKDDDGERMVACDICQVWQHTRCNSIADNEV---V-PSVFKCRACTAAV 585 (586)
Q Consensus 534 ~VrCiCG~~dDDGe~MIqCD~C~vWQH~~CvGI~~~~~---~-p~~f~C~~C~~~l 585 (586)
-..|.||.... +.+||+|++|+.|+|..|..-..++. . -..|+|..|....
T Consensus 171 c~vC~~g~~~~-~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~ 225 (464)
T KOG4323|consen 171 CSVCYCGGPGA-GNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGP 225 (464)
T ss_pred eeeeecCCcCc-cceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccch
Confidence 56778888655 44999999999999999998775543 2 3799999998753
No 9
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=95.89 E-value=0.0044 Score=71.18 Aligned_cols=51 Identities=33% Similarity=0.762 Sum_probs=42.0
Q ss_pred CCcEEe-ecCCCC-CCCCCeEeecCCCccccccccccCCCCCCCCceecCCCCCC
Q 041583 532 DWTVDC-VCGAKD-DDGERMVACDICQVWQHTRCNSIADNEVVPSVFKCRACTAA 584 (586)
Q Consensus 532 ~~~VrC-iCG~~d-DDGe~MIqCD~C~vWQH~~CvGI~~~~~~p~~f~C~~C~~~ 584 (586)
++.+.| +|...| +++..||-||+|++-.|..|+||..-+ ...|.|..|...
T Consensus 269 dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p--~gpWlCr~Calg 321 (893)
T KOG0954|consen 269 DEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVP--EGPWLCRTCALG 321 (893)
T ss_pred cccceeceecCCCccccceeEEeccchhHHHHhhhceeecC--CCCeeehhcccc
Confidence 477889 999874 556789999999999999999998432 278999999643
No 10
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.95 E-value=0.013 Score=67.78 Aligned_cols=53 Identities=23% Similarity=0.522 Sum_probs=43.0
Q ss_pred CCCCcEEe-ecCCCCCCCCCeEeecCCCcc-ccccccccCCCCCCCCceecCCCCC
Q 041583 530 ADDWTVDC-VCGAKDDDGERMVACDICQVW-QHTRCNSIADNEVVPSVFKCRACTA 583 (586)
Q Consensus 530 ~d~~~VrC-iCG~~dDDGe~MIqCD~C~vW-QH~~CvGI~~~~~~p~~f~C~~C~~ 583 (586)
..+..+.| +|+..| -.+.|+-||.|+.- +|+-|...+-.+--...|||+.|..
T Consensus 211 ~~~E~~~C~IC~~~D-pEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 211 LSQEEVKCDICTVHD-PEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSL 265 (1134)
T ss_pred cccccccceeeccCC-hHHhheeecccccceeeccccCcccccccccceecCcchh
Confidence 35678999 999964 45599999999977 9999999865544458999999963
No 11
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=94.43 E-value=0.03 Score=62.31 Aligned_cols=56 Identities=25% Similarity=0.596 Sum_probs=41.6
Q ss_pred CCCCCcEEeecCC-CCCCCCCeEeecCCCccccccccccCCCCCC--------CCceecCCCCCC
Q 041583 529 GADDWTVDCVCGA-KDDDGERMVACDICQVWQHTRCNSIADNEVV--------PSVFKCRACTAA 584 (586)
Q Consensus 529 g~d~~~VrCiCG~-~dDDGe~MIqCD~C~vWQH~~CvGI~~~~~~--------p~~f~C~~C~~~ 584 (586)
.+..|.+=|+|=. .-+|-.-.||||+|++-.|-.|+|..++..+ ...|||+-|.-.
T Consensus 115 apkk~~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~G 179 (707)
T KOG0957|consen 115 APKKAVICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYG 179 (707)
T ss_pred ccccceEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcC
Confidence 3456778789943 3334336999999999999999999865433 268999988643
No 12
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=94.35 E-value=0.016 Score=62.07 Aligned_cols=49 Identities=31% Similarity=0.677 Sum_probs=40.7
Q ss_pred EeecCCCCCCCCCeEeecCCCccccccc--cccCCCCCC-CCceecCCCCCC
Q 041583 536 DCVCGAKDDDGERMVACDICQVWQHTRC--NSIADNEVV-PSVFKCRACTAA 584 (586)
Q Consensus 536 rCiCG~~dDDGe~MIqCD~C~vWQH~~C--vGI~~~~~~-p~~f~C~~C~~~ 584 (586)
.|.|-...+-..+|++||.|..|+|+.| ++++..+.. ++.|+|..|...
T Consensus 62 ~~~~~~~~~p~~~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~ 113 (345)
T KOG1632|consen 62 YCKCYKPCDPDDLMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECKEA 113 (345)
T ss_pred hhhcccccCchhhhhccccccccccccccccCchhhcCCccccccccccchh
Confidence 7888886554449999999999999999 999976554 599999999754
No 13
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=92.19 E-value=0.016 Score=62.04 Aligned_cols=54 Identities=30% Similarity=0.771 Sum_probs=43.0
Q ss_pred CCCCcEEe-ecCCCCCCCCCeEeecCCCccccccccccCCCCC-CCCc----eecCCCCC
Q 041583 530 ADDWTVDC-VCGAKDDDGERMVACDICQVWQHTRCNSIADNEV-VPSV----FKCRACTA 583 (586)
Q Consensus 530 ~d~~~VrC-iCG~~dDDGe~MIqCD~C~vWQH~~CvGI~~~~~-~p~~----f~C~~C~~ 583 (586)
.+...+.| .||.++-...+||.|+.|..|+|+.|+.|..+.. .+.. |+|+.|..
T Consensus 235 ~~~~~~~~~~cg~~~~~~~~~~~~~~~e~w~~~~~v~~~~a~~~~~~~~~~~~~c~~~~~ 294 (345)
T KOG1632|consen 235 PDYSKLICDPCGLSDANKKFEICCDLCESWFHGDCVQIFEARKRLNEIRNEVYKCPHCTV 294 (345)
T ss_pred cccccccccccCcchHHHHHHHHHHHHHHHhcccccccccchhhhhhhhccceecCceee
Confidence 45666888 8998654448999999999999999999987643 2455 99999964
No 14
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=90.83 E-value=0.14 Score=53.67 Aligned_cols=48 Identities=27% Similarity=0.637 Sum_probs=39.5
Q ss_pred Ee-ecCCCCCCCCCeEeecCCCccccccccccCCCCCCCCceecCCCCCC
Q 041583 536 DC-VCGAKDDDGERMVACDICQVWQHTRCNSIADNEVVPSVFKCRACTAA 584 (586)
Q Consensus 536 rC-iCG~~dDDGe~MIqCD~C~vWQH~~CvGI~~~~~~p~~f~C~~C~~~ 584 (586)
.| +||.+++|. ..+-||.|+.=+|+-|...+-.++.--.|.|..|-..
T Consensus 283 ~csicgtsendd-qllfcddcdrgyhmyclsppm~eppegswsc~KOG~~ 331 (336)
T KOG1244|consen 283 YCSICGTSENDD-QLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEE 331 (336)
T ss_pred eeccccCcCCCc-eeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHH
Confidence 45 899988777 7999999999999999998765555578999988543
No 15
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=89.66 E-value=0.25 Score=59.83 Aligned_cols=51 Identities=25% Similarity=0.606 Sum_probs=39.3
Q ss_pred CCCCcEEe-ecCCCCCC-CCCeEeecCCCccccccccccCCCCCCC-CceecCCCCC
Q 041583 530 ADDWTVDC-VCGAKDDD-GERMVACDICQVWQHTRCNSIADNEVVP-SVFKCRACTA 583 (586)
Q Consensus 530 ~d~~~VrC-iCG~~dDD-Ge~MIqCD~C~vWQH~~CvGI~~~~~~p-~~f~C~~C~~ 583 (586)
+.++.-.| +|-..+-+ ...-+.||.|+.-.|..|+||+ .+| ..|.|-+|-.
T Consensus 215 ~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~---~ipeg~WlCr~Cl~ 268 (1051)
T KOG0955|consen 215 LLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIP---FIPEGQWLCRRCLQ 268 (1051)
T ss_pred ccCCCccceeecccccCCCceEEEcCCCcchhhhhccCCC---CCCCCcEeehhhcc
Confidence 34566666 99875332 3589999999999999999976 444 7899999964
No 16
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=89.16 E-value=0.16 Score=56.66 Aligned_cols=48 Identities=27% Similarity=0.793 Sum_probs=37.6
Q ss_pred CCcEEe-ecCCCCCC-CCCeEeecCCCccccccccccCCCCCCCC-ceecCCCC
Q 041583 532 DWTVDC-VCGAKDDD-GERMVACDICQVWQHTRCNSIADNEVVPS-VFKCRACT 582 (586)
Q Consensus 532 ~~~VrC-iCG~~dDD-Ge~MIqCD~C~vWQH~~CvGI~~~~~~p~-~f~C~~C~ 582 (586)
+-.-.| +|...+.| .+-.|-||+|+.-.|-.|+||. -+|+ .|+|.+|-
T Consensus 191 ~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~---f~peG~WlCrkCi 241 (669)
T COG5141 191 EFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQ---FLPEGFWLCRKCI 241 (669)
T ss_pred hhhhhhHhccccccCCcceEEEecCcchhhhhhcccce---ecCcchhhhhhhc
Confidence 344568 78776543 4689999999999999999998 4565 88888884
No 17
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=85.89 E-value=0.39 Score=50.70 Aligned_cols=65 Identities=20% Similarity=0.415 Sum_probs=41.6
Q ss_pred eEEeccccCccccccccCCCCCCc-EEe----ecCCCCCCCCCeEeecCCCccccccccccCCCCCCC-CceecC
Q 041583 511 VWVRGWGLDLDTELRFEGGADDWT-VDC----VCGAKDDDGERMVACDICQVWQHTRCNSIADNEVVP-SVFKCR 579 (586)
Q Consensus 511 v~vrG~~~~~e~~~~~e~g~d~~~-VrC----iCG~~dDDGe~MIqCD~C~vWQH~~CvGI~~~~~~p-~~f~C~ 579 (586)
+.-+-.|.+|-.++...-..=.|. +.| ||+.+.-.. -|+-||.|+.=+|+-|||+. .+| -.|+|.
T Consensus 287 ~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~~E~-E~~FCD~CDRG~HT~CVGL~---~lP~G~WICD 357 (381)
T KOG1512|consen 287 TRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPVIES-EHLFCDVCDRGPHTLCVGLQ---DLPRGEWICD 357 (381)
T ss_pred cCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcccch-heeccccccCCCCccccccc---cccCccchhh
Confidence 444445666643332111112243 444 788765444 59999999999999999997 444 788987
No 18
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=85.87 E-value=0.67 Score=51.44 Aligned_cols=47 Identities=30% Similarity=0.765 Sum_probs=34.0
Q ss_pred ecCCCCC--CCCCeEeecCCCccccccccccCC--------CCC---CCCceecCCCCCC
Q 041583 538 VCGAKDD--DGERMVACDICQVWQHTRCNSIAD--------NEV---VPSVFKCRACTAA 584 (586)
Q Consensus 538 iCG~~dD--DGe~MIqCD~C~vWQH~~CvGI~~--------~~~---~p~~f~C~~C~~~ 584 (586)
+|+.-|+ |+-.+|.||.|.-|-|+.|.--.. ... ..-.|+|..|...
T Consensus 133 iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~ 192 (446)
T PF07227_consen 133 ICSKFDDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGKT 192 (446)
T ss_pred ccCCcccCCCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCCh
Confidence 7776433 457999999999999999964322 111 2469999999853
No 19
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=82.75 E-value=0.21 Score=57.37 Aligned_cols=49 Identities=37% Similarity=0.824 Sum_probs=36.5
Q ss_pred EEe-ecCCCCCCC--CCeEeecCCCccccccccccCCCCC---CC-CceecCCCCC
Q 041583 535 VDC-VCGAKDDDG--ERMVACDICQVWQHTRCNSIADNEV---VP-SVFKCRACTA 583 (586)
Q Consensus 535 VrC-iCG~~dDDG--e~MIqCD~C~vWQH~~CvGI~~~~~---~p-~~f~C~~C~~ 583 (586)
-+| +|-..+.+. .+|++|+.|..|+|+.|-+|.+..- .. -.|-|..|+-
T Consensus 146 ~~cPvc~~~Y~~~e~~~~~~c~~c~rwsh~~c~~~sdd~~~q~~vD~~~~CS~CR~ 201 (694)
T KOG4443|consen 146 SYCPVCLIVYQDSESLPMVCCSICQRWSHGGCDGISDDKYMQAQVDLQYKCSTCRG 201 (694)
T ss_pred ccCchHHHhhhhccchhhHHHHHhcccccCCCCccchHHHHHHhhhhhcccceeeh
Confidence 445 465554444 5789999999999999999987531 23 4999999973
No 20
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=79.94 E-value=0.43 Score=59.59 Aligned_cols=53 Identities=32% Similarity=0.589 Sum_probs=44.6
Q ss_pred CCCcEEe-ecCCCCCCCCCeEeecCCCccccccccccCCCCCCCCceecCCCCCC
Q 041583 531 DDWTVDC-VCGAKDDDGERMVACDICQVWQHTRCNSIADNEVVPSVFKCRACTAA 584 (586)
Q Consensus 531 d~~~VrC-iCG~~dDDGe~MIqCD~C~vWQH~~CvGI~~~~~~p~~f~C~~C~~~ 584 (586)
......| +|....++ +.|+-||.|..|.|.-|....-...-+..|+|+.|...
T Consensus 1105 s~~~~~c~~cr~k~~~-~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e 1158 (1404)
T KOG1245|consen 1105 SAVNALCKVCRRKKQD-EKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKE 1158 (1404)
T ss_pred ccchhhhhhhhhcccc-hhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchh
Confidence 5566889 99997665 48999999999999999998766556789999999864
No 21
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.
Probab=78.36 E-value=1 Score=35.57 Aligned_cols=32 Identities=25% Similarity=0.619 Sum_probs=18.7
Q ss_pred CeEeecCCCccccccccccCCC-CCCCCceecCC
Q 041583 548 RMVACDICQVWQHTRCNSIADN-EVVPSVFKCRA 580 (586)
Q Consensus 548 ~MIqCD~C~vWQH~~CvGI~~~-~~~p~~f~C~~ 580 (586)
..||||.|..|-... .++... ...|+.|+|..
T Consensus 2 ~WVQCd~C~KWR~lp-~~~~~~~~~~~d~W~C~~ 34 (50)
T PF07496_consen 2 YWVQCDSCLKWRRLP-EEVDPIREELPDPWYCSM 34 (50)
T ss_dssp EEEE-TTT--EEEE--CCHHCTSCCSSTT--GGG
T ss_pred eEEECCCCCceeeCC-hhhCcccccCCCeEEcCC
Confidence 589999999999987 444331 34678999987
No 22
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=78.16 E-value=1.1 Score=50.37 Aligned_cols=51 Identities=22% Similarity=0.556 Sum_probs=40.2
Q ss_pred CCcEEe-ecCCCCCCCCCeEeecCCCccccccccccCCCCC----CCCceecCCCCC
Q 041583 532 DWTVDC-VCGAKDDDGERMVACDICQVWQHTRCNSIADNEV----VPSVFKCRACTA 583 (586)
Q Consensus 532 ~~~VrC-iCG~~dDDGe~MIqCD~C~vWQH~~CvGI~~~~~----~p~~f~C~~C~~ 583 (586)
.-.+.| ||..+. |....++||.|+.-+|..|...+-... ...-|.|..|..
T Consensus 542 a~~ysCgiCkks~-dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECdk 597 (707)
T KOG0957|consen 542 AMNYSCGICKKST-DQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECDK 597 (707)
T ss_pred ccceeeeeeccch-hhHHHhhcchhhceeeccccCCccccCcccccCcceeeccccc
Confidence 345789 899874 455999999999999999999775432 357899999954
No 23
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=73.67 E-value=2.1 Score=45.92 Aligned_cols=35 Identities=29% Similarity=0.653 Sum_probs=27.7
Q ss_pred CcEEeecCCCCCC-----CCCeEeecCCCcccc-ccccccC
Q 041583 533 WTVDCVCGAKDDD-----GERMVACDICQVWQH-TRCNSIA 567 (586)
Q Consensus 533 ~~VrCiCG~~dDD-----Ge~MIqCD~C~vWQH-~~CvGI~ 567 (586)
....|.|...++| +.-|+||..|.-|+| -.|+...
T Consensus 127 qG~~C~Cd~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~~~ 167 (345)
T KOG2752|consen 127 QGLFCKCDTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQAK 167 (345)
T ss_pred cceeEEecCCCCCccccccceeeeEEeccchhcccccCccc
Confidence 4578999997655 457999999999999 5676544
No 24
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=71.89 E-value=2.4 Score=34.67 Aligned_cols=33 Identities=36% Similarity=0.729 Sum_probs=28.3
Q ss_pred CcEEe-ecCCCCCCCCCeEeecCCCccccccccc
Q 041583 533 WTVDC-VCGAKDDDGERMVACDICQVWQHTRCNS 565 (586)
Q Consensus 533 ~~VrC-iCG~~dDDGe~MIqCD~C~vWQH~~CvG 565 (586)
...+| +||....+++.-|.|..|+.-+|..|..
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 45679 8999877677899999999999999984
No 25
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=70.10 E-value=2.7 Score=49.36 Aligned_cols=45 Identities=24% Similarity=0.603 Sum_probs=33.8
Q ss_pred EEe-ecCCCCCCCCCeEeecCCCccccccccccCCCCCCCCceecCCCCC
Q 041583 535 VDC-VCGAKDDDGERMVACDICQVWQHTRCNSIADNEVVPSVFKCRACTA 583 (586)
Q Consensus 535 VrC-iCG~~dDDGe~MIqCD~C~vWQH~~CvGI~~~~~~p~~f~C~~C~~ 583 (586)
-.| +|+. .| -.+.||.|-.|+|..|.+.+-.+.....|.|++|..
T Consensus 48 e~c~ic~~---~g-~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~ 93 (696)
T KOG0383|consen 48 EACRICAD---GG-ELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFC 93 (696)
T ss_pred hhhhhhcC---CC-cEEEeccccHHHHHHccCCCCCcCCccceeeeeecc
Confidence 345 7774 35 588999999999999999875543323399999954
No 26
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=67.66 E-value=3.2 Score=47.80 Aligned_cols=49 Identities=22% Similarity=0.493 Sum_probs=37.2
Q ss_pred cEEe-ecCCCCCCCCCeEeecCCCccccccccccCCC-CCC-CCceecCCCCC
Q 041583 534 TVDC-VCGAKDDDGERMVACDICQVWQHTRCNSIADN-EVV-PSVFKCRACTA 583 (586)
Q Consensus 534 ~VrC-iCG~~dDDGe~MIqCD~C~vWQH~~CvGI~~~-~~~-p~~f~C~~C~~ 583 (586)
...| -|+....= ...|+||.|..=+|..|...+-. +.+ +..|+|+.|.-
T Consensus 253 ~~fCsaCn~~~~F-~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~ 304 (613)
T KOG4299|consen 253 EDFCSACNGSGLF-NDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKI 304 (613)
T ss_pred HHHHHHhCCcccc-ccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCee
Confidence 4479 79986322 24599999999999999998732 234 48999999974
No 27
>PF05207 zf-CSL: CSL zinc finger; InterPro: IPR007872 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a probable zinc binding motif that contains four cysteines and may chelate zinc, known as the DPH-type after the diphthamide (DPH) biosynthesis protein in which it was first characterised, including the proteins DPH3 and DPH4. This domain is also found associated with N-terminal domain of heat shock protein DnaJ IPR001623 from INTERPRO domain. Diphthamide is a unique post-translationally modified histidine residue found only in translation elongation factor 2 (eEF-2). It is conserved from archaea to humans and serves as the target for diphteria toxin and Pseudomonas exotoxin A. These two toxins catalyse the transfer of ADP-ribose to diphtamide on eEF-2, thus inactivating eEF-2, halting cellular protein synthesis, and causing cell death []. The biosynthesis of diphtamide is dependent on at least five proteins, DPH1 to -5, and a still unidentified amidating enzyme. DPH3 and DPH4 share a conserved region, which encode a putative zinc finger, the DPH-type or CSL-type (after the conserved motif of the final cysteine) zinc finger [, ]. The function of this motif is unknown. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2L6L_A 1WGE_A 2JR7_A 1YOP_A 1YWS_A.
Probab=64.47 E-value=2.9 Score=33.84 Aligned_cols=37 Identities=30% Similarity=0.880 Sum_probs=26.2
Q ss_pred ccccCCCCCCcEEeecCCC-------CCCCCCeEeecCCCcccc
Q 041583 524 LRFEGGADDWTVDCVCGAK-------DDDGERMVACDICQVWQH 560 (586)
Q Consensus 524 ~~~e~g~d~~~VrCiCG~~-------dDDGe~MIqCD~C~vWQH 560 (586)
+..+.+++.+...|.||.. ..+++-.|+|+.|..|-.
T Consensus 8 ~~~~~~~~~~~y~CRCG~~f~i~e~~l~~~~~iv~C~sCSL~I~ 51 (55)
T PF05207_consen 8 MEFDEEEGVYSYPCRCGGEFEISEEDLEEGEVIVQCDSCSLWIR 51 (55)
T ss_dssp SEEETTTTEEEEEETTSSEEEEEHHHHHCT--EEEETTTTEEEE
T ss_pred ceecCCCCEEEEcCCCCCEEEEcchhccCcCEEEECCCCccEEE
Confidence 3334455678899999985 245678999999999865
No 28
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=63.33 E-value=17 Score=31.38 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=32.6
Q ss_pred eeeeCCCCCHHHHHHHHHhhhhhhhhceeeeeeeee
Q 041583 462 LIVAPKDVTVDELKLIVECSLRDTYCMMEKVVVKEI 497 (586)
Q Consensus 462 lv~lp~~aTv~eLK~ea~r~frD~Y~~~r~f~~~~l 497 (586)
|+..+++.|+.+|+.|.+..|..+|--.+.+.+..+
T Consensus 6 Lhlt~~~~tl~~L~~eI~~~f~kLYP~~~~~~I~~L 41 (73)
T PF10407_consen 6 LHLTDPNNTLSQLKEEIEERFKKLYPNEPELEILSL 41 (73)
T ss_pred EEEeCCCCcHHHHHHHHHHHHHHHCCCCCCceEEEe
Confidence 456678999999999999999999999999988888
No 29
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=63.30 E-value=2.7 Score=29.63 Aligned_cols=28 Identities=29% Similarity=0.707 Sum_probs=11.9
Q ss_pred Ee-ecCCCCCCCCCeEeecCCCcccccccc
Q 041583 536 DC-VCGAKDDDGERMVACDICQVWQHTRCN 564 (586)
Q Consensus 536 rC-iCG~~dDDGe~MIqCD~C~vWQH~~Cv 564 (586)
.| .|+.+.+. ...-.|+.|+...|..|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 46 78886444 589999999999999985
No 30
>KOG2626 consensus Histone H3 (Lys4) methyltransferase complex, subunit CPS60/ASH2/BRE2 [Chromatin structure and dynamics; Transcription]
Probab=57.80 E-value=8.5 Score=43.86 Aligned_cols=54 Identities=20% Similarity=0.424 Sum_probs=41.4
Q ss_pred CCCcEEeecCCCCCCCCCeEeecCCCccccccccccCCCC--C----CCCceecCCCCCC
Q 041583 531 DDWTVDCVCGAKDDDGERMVACDICQVWQHTRCNSIADNE--V----VPSVFKCRACTAA 584 (586)
Q Consensus 531 d~~~VrCiCG~~dDDGe~MIqCD~C~vWQH~~CvGI~~~~--~----~p~~f~C~~C~~~ 584 (586)
..-.+.|.|+....-+..-+||..|..|.|+.|+-..... . .-..|+|..|...
T Consensus 17 ~~~~~~~y~e~~r~l~~~elqcs~clk~~~~~~~~~~~~~~s~~pf~t~y~fvc~~c~~~ 76 (544)
T KOG2626|consen 17 MKQATVCYCEGERNLGIVELQCSTCLKWFHLPTLEAFHLIKSSLPFMTSYEFVCKECTPS 76 (544)
T ss_pred ccCccccccccccccCceeeEeeecccccccccccccccccccCCcccceeEEeccccCc
Confidence 4556889999987777889999999999998665443221 1 2479999999875
No 31
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=52.36 E-value=6.8 Score=34.69 Aligned_cols=34 Identities=26% Similarity=0.774 Sum_probs=28.1
Q ss_pred CCCcEEe-ecCCCCCCCCCeEeecC--CCccccccccccC
Q 041583 531 DDWTVDC-VCGAKDDDGERMVACDI--CQVWQHTRCNSIA 567 (586)
Q Consensus 531 d~~~VrC-iCG~~dDDGe~MIqCD~--C~vWQH~~CvGI~ 567 (586)
+.+...| +|+.+ .| ..|+|.. |..++|..|....
T Consensus 52 ~~~~~~C~iC~~~--~G-~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 52 SRFKLKCSICGKS--GG-ACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred hhcCCcCcCCCCC--Cc-eeEEcCCCCCCcCCCHHHHHHC
Confidence 3467889 89986 45 7999998 9999999998654
No 32
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=48.29 E-value=11 Score=48.83 Aligned_cols=31 Identities=26% Similarity=0.495 Sum_probs=25.8
Q ss_pred chhhhhhhcccccc-----------ccccchhhhhccchhhH
Q 041583 254 VIGKIIHLYMNASD-----------TQLITISDLLQWGVQRL 284 (586)
Q Consensus 254 ~~~~ii~~Y~~lS~-----------~~L~t~~dL~rWs~~r~ 284 (586)
--.+|+..|+.||- +.+.|+||||||+.+..
T Consensus 1053 yakKiVeVyr~Ls~rRs~~rifeqknsfaTLRDLFrWa~R~a 1094 (4600)
T COG5271 1053 YAKKIVEVYRGLSSRRSINRIFEQKNSFATLRDLFRWAGRIA 1094 (4600)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHhcccc
Confidence 45789999999993 47899999999997753
No 33
>PLN02400 cellulose synthase
Probab=47.05 E-value=22 Score=43.91 Aligned_cols=46 Identities=24% Similarity=0.645 Sum_probs=37.3
Q ss_pred EEe-ecCCC---CCCCCCeEeecCCCccccccccccCCCCCCCCceecCCCCC
Q 041583 535 VDC-VCGAK---DDDGERMVACDICQVWQHTRCNSIADNEVVPSVFKCRACTA 583 (586)
Q Consensus 535 VrC-iCG~~---dDDGe~MIqCD~C~vWQH~~CvGI~~~~~~p~~f~C~~C~~ 583 (586)
-.| |||-. ..|||+.|+|..|..-.=..|+-...++ ..=.||.|+-
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERke---Gnq~CPQCkT 86 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKD---GTQCCPQCKT 86 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheeccc---CCccCcccCC
Confidence 368 99984 5789999999999999999999766443 5558888874
No 34
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=46.00 E-value=8.9 Score=36.37 Aligned_cols=93 Identities=16% Similarity=0.311 Sum_probs=52.2
Q ss_pred CCCCCceeeeCCCCCHHHHHHHHHhhhhhhhhceeeeeeeeeecccccceeccceeEEecccc--Cccc---cccccCCC
Q 041583 456 PLPPAELIVAPKDVTVDELKLIVECSLRDTYCMMEKVVVKEIKMGQNQVFWGAGDVWVRGWGL--DLDT---ELRFEGGA 530 (586)
Q Consensus 456 ~~pP~Elv~lp~~aTv~eLK~ea~r~frD~Y~~~r~f~~~~l~~g~e~g~v~sg~v~vrG~~~--~~e~---~~~~e~g~ 530 (586)
.+|||++.+--....+.-++.-+...-|+--..++=|. .+| .- .|.++.|...++|.-. .+++ .|.
T Consensus 24 ~mP~~~v~~eG~kTvi~Nf~~Ia~~L~R~~~~v~ky~~-~EL-gt--~g~i~~~rlii~G~~~~~~i~~~L~~yI----- 94 (133)
T TIGR00311 24 EVPKAYIVIEGNRTIIQNFREVAKALNRDEQHLLKYLL-KEL-GT--AGNLEGGRLILQGKFTHFLLNERIEDYV----- 94 (133)
T ss_pred cCCCceEEEEcCcEEEecHHHHHHHHCCCHHHHHHHHH-HHh-CC--CceecCCEEEEEeecCHHHHHHHHHHHH-----
Confidence 48999988887654444455555444444433332222 222 00 4445555888998831 1222 222
Q ss_pred CCCcEEe-ecCCCC-----CCCCCeEeecCCCcc
Q 041583 531 DDWTVDC-VCGAKD-----DDGERMVACDICQVW 558 (586)
Q Consensus 531 d~~~VrC-iCG~~d-----DDGe~MIqCD~C~vW 558 (586)
..-|-| .|+.++ ++.-.|+.|+.|+-.
T Consensus 95 -~~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~ 127 (133)
T TIGR00311 95 -RKYVICRECNRPDTRIIKEGRVSLLKCEACGAK 127 (133)
T ss_pred -hheEECCCCCCCCcEEEEeCCeEEEecccCCCC
Confidence 345899 799964 223346799999854
No 35
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=44.08 E-value=27 Score=37.66 Aligned_cols=70 Identities=14% Similarity=0.273 Sum_probs=54.5
Q ss_pred ccchhhhhhhccccccccccchhhhhc-cchhhHHH-HHHHHHHHHHhhccccCCCCccchHHHHHHHhcccCCcchHHH
Q 041583 252 GRVIGKIIHLYMNASDTQLITISDLLQ-WGVQRLEQ-AAKAIFTTLEQRNASINSKAKISRRELRDEARKKIGDTGLLDF 329 (586)
Q Consensus 252 ~~~~~~ii~~Y~~lS~~~L~t~~dL~r-Ws~~r~~~-A~~~~v~vLr~~~a~~~~~~wvsr~~LR~aark~IGdtgLLD~ 329 (586)
+..+.++|+.|...+++..-++-+-+. |+..+++. +++|+++-|+- | |...-++|.+|+.||+
T Consensus 254 RpgvsNLlni~aaVt~~s~eeV~~~~a~~~~~~fK~~vaeAvie~L~P----------I-----r~~fee~~~~~~~l~k 318 (347)
T KOG2713|consen 254 RPGVSNLLNIYAAVTGKSIEEVVEESANMSTADFKDNVAEAVIEHLAP----------I-----RTEFEELINEPEYLDK 318 (347)
T ss_pred ccchhHHHHHHHHHcCCCHHHHHHHhccCCHHHHHHHHHHHHHHHhcc----------H-----HHHHHHHhcCHHHHHH
Confidence 678999999999999987766665443 99888874 67888888743 2 4556778999999999
Q ss_pred HHhhcCC
Q 041583 330 MIKHIHK 336 (586)
Q Consensus 330 ~LK~l~~ 336 (586)
+|+.=+.
T Consensus 319 vl~~Gae 325 (347)
T KOG2713|consen 319 VLEEGAE 325 (347)
T ss_pred HHHHhHH
Confidence 9976443
No 36
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=41.80 E-value=50 Score=28.40 Aligned_cols=53 Identities=15% Similarity=0.322 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHhhccccCCCCccchHHHHHHHhcccCC-------cchHHHHHhhcC
Q 041583 283 RLEQAAKAIFTTLEQRNASINSKAKISRRELRDEARKKIGD-------TGLLDFMIKHIH 335 (586)
Q Consensus 283 r~~~A~~~~v~vLr~~~a~~~~~~wvsr~~LR~aark~IGd-------tgLLD~~LK~l~ 335 (586)
++|.|-+.|+.+.++--+.......||+.+||..+.+..|+ ..-+|.+++.++
T Consensus 2 ~~e~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D 61 (88)
T cd05030 2 ELEKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLD 61 (88)
T ss_pred hHHHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcC
Confidence 67889999999997653222234689999999999764454 466788887663
No 37
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=41.65 E-value=11 Score=35.92 Aligned_cols=94 Identities=17% Similarity=0.280 Sum_probs=51.2
Q ss_pred CCCCCceeeeCCCCCHHHHHHHHHhhhhhhhhceeeeeeeeeecccccceeccceeEEeccc--cCccc---cccccCCC
Q 041583 456 PLPPAELIVAPKDVTVDELKLIVECSLRDTYCMMEKVVVKEIKMGQNQVFWGAGDVWVRGWG--LDLDT---ELRFEGGA 530 (586)
Q Consensus 456 ~~pP~Elv~lp~~aTv~eLK~ea~r~frD~Y~~~r~f~~~~l~~g~e~g~v~sg~v~vrG~~--~~~e~---~~~~e~g~ 530 (586)
.+|||++..--....+.-++.-+...-|+--..++ |-..+| .- .|.++.|++.++|+- ..+++ .|.
T Consensus 29 ~~p~~~v~~eG~kTvi~Nf~~I~~~L~R~~~hv~k-y~~~EL-gt--~g~i~~~~lii~G~~~~~~i~~~L~~yI----- 99 (138)
T PRK03988 29 EVPKPDVRIEGNRTIIRNFKEIADRLNRDPKHVAK-FLLKEL-GT--AGNIEGGRLILQGKFSPRVINEKIDRYV----- 99 (138)
T ss_pred eCCCCeEEEEcCcEEEecHHHHHHHHCCCHHHHHH-HHHHHh-CC--ceeecCCEEEEEEeeCHHHHHHHHHHHH-----
Confidence 48899988887543333334333333333322222 111222 10 455555588899883 11222 232
Q ss_pred CCCcEEe-ecCCCC-----CCCCCeEeecCCCccc
Q 041583 531 DDWTVDC-VCGAKD-----DDGERMVACDICQVWQ 559 (586)
Q Consensus 531 d~~~VrC-iCG~~d-----DDGe~MIqCD~C~vWQ 559 (586)
..-|.| .||.++ ++.-.++.|+.|+-..
T Consensus 100 -~~yVlC~~C~spdT~l~k~~r~~~l~C~ACGa~~ 133 (138)
T PRK03988 100 -KEYVICPECGSPDTKLIKEGRIWVLKCEACGAET 133 (138)
T ss_pred -HhcEECCCCCCCCcEEEEcCCeEEEEcccCCCCC
Confidence 345899 899974 3344688999998654
No 38
>PLN02436 cellulose synthase A
Probab=39.16 E-value=29 Score=42.82 Aligned_cols=47 Identities=28% Similarity=0.642 Sum_probs=37.3
Q ss_pred EEe-ecCCC---CCCCCCeEeecCCCccccccccccCCCCCCCCceecCCCCCC
Q 041583 535 VDC-VCGAK---DDDGERMVACDICQVWQHTRCNSIADNEVVPSVFKCRACTAA 584 (586)
Q Consensus 535 VrC-iCG~~---dDDGe~MIqCD~C~vWQH~~CvGI~~~~~~p~~f~C~~C~~~ 584 (586)
-.| |||-. ..|||+.|+|..|..-.=..|+-...+ ...=.|+.|+.+
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~---eg~~~Cpqckt~ 87 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERR---EGNQACPQCKTR 87 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhh---cCCccCcccCCc
Confidence 368 99985 689999999999999999999966543 355578888753
No 39
>TIGR03638 cas1_ECOLI CRISPR-associated endonuclease Cas1, ECOLI subtype. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.
Probab=38.67 E-value=55 Score=34.06 Aligned_cols=43 Identities=23% Similarity=0.319 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhccccCCCCccchHHHHHHHhcccCCcchHHHHHhhcC
Q 041583 286 QAAKAIFTTLEQRNASINSKAKISRRELRDEARKKIGDTGLLDFMIKHIH 335 (586)
Q Consensus 286 ~A~~~~v~vLr~~~a~~~~~~wvsr~~LR~aark~IGdtgLLD~~LK~l~ 335 (586)
.+-..++++.+. +.--..+++|.++|..+-++.|||.++..|-
T Consensus 223 ~~~~laf~~~~~-------~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 265 (269)
T TIGR03638 223 TTIPLAFSLAAT-------SGDNLEREVRHACRDLFRETKLLERIIPDIE 265 (269)
T ss_pred hhHHHHHHHHhc-------CCCChHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 445556666554 2224677888888888888999999998764
No 40
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=37.14 E-value=49 Score=29.06 Aligned_cols=33 Identities=24% Similarity=0.511 Sum_probs=27.1
Q ss_pred CCccchHHHHHHHhcccCC--------------cchHHHHHhhcCCeec
Q 041583 305 KAKISRRELRDEARKKIGD--------------TGLLDFMIKHIHKIIL 339 (586)
Q Consensus 305 ~~wvsr~~LR~aark~IGd--------------tgLLD~~LK~l~~~~v 339 (586)
++++|+++|+.++-...|. .+||+|+++. ||++
T Consensus 15 ~~~~t~~~L~~~i~~~FG~~arFhTCSa~~m~a~~Li~FL~~k--gKfi 61 (77)
T TIGR03853 15 GEPYTRESLKAAIEQKFGEDARFHTCSAEGMTADELLQFLLKK--GKFI 61 (77)
T ss_pred CCCcCHHHHHHHHHHHhCCCceEeecccccCCHHHHHHHHHHC--CCEe
Confidence 7899999999999988886 4799998863 5554
No 41
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=36.88 E-value=28 Score=24.65 Aligned_cols=27 Identities=41% Similarity=0.767 Sum_probs=21.2
Q ss_pred Ee-ecCCCCCCCCC-eEeecCCCcccccccc
Q 041583 536 DC-VCGAKDDDGER-MVACDICQVWQHTRCN 564 (586)
Q Consensus 536 rC-iCG~~dDDGe~-MIqCD~C~vWQH~~Cv 564 (586)
.| +|+.. -+| + +-.|+.|..-.|.+|+
T Consensus 2 ~C~~C~~~-~~~-~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRK-IDG-FYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCC-cCC-CEeEEeCCCCCeEcCccC
Confidence 47 78875 445 4 8999999999999985
No 42
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=36.87 E-value=23 Score=43.77 Aligned_cols=46 Identities=30% Similarity=0.726 Sum_probs=37.0
Q ss_pred EEe-ecCCC---CCCCCCeEeecCCCccccccccccCCCCCCCCceecCCCCC
Q 041583 535 VDC-VCGAK---DDDGERMVACDICQVWQHTRCNSIADNEVVPSVFKCRACTA 583 (586)
Q Consensus 535 VrC-iCG~~---dDDGe~MIqCD~C~vWQH~~CvGI~~~~~~p~~f~C~~C~~ 583 (586)
-.| |||-. ..||++.|+|..|..-.=..|+-...++ -.=.||.|+-
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~e---G~q~CPqCkt 67 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKD---GNQSCPQCKT 67 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhc---CCccCCccCC
Confidence 368 99985 5789999999999999999999765443 4557888874
No 43
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=35.50 E-value=7.7 Score=34.06 Aligned_cols=46 Identities=28% Similarity=0.653 Sum_probs=21.9
Q ss_pred EEe-ecCCC---CCCCCCeEeecCCCccccccccccCCCCCCCCceecCCCCC
Q 041583 535 VDC-VCGAK---DDDGERMVACDICQVWQHTRCNSIADNEVVPSVFKCRACTA 583 (586)
Q Consensus 535 VrC-iCG~~---dDDGe~MIqCD~C~vWQH~~CvGI~~~~~~p~~f~C~~C~~ 583 (586)
-.| +||-. ..+|+..|+|..|.+-.=..|+-..-++ ..=.|+.|+.
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErke---g~q~CpqCkt 59 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKE---GNQVCPQCKT 59 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHT---S-SB-TTT--
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhc---CcccccccCC
Confidence 357 89874 5789999999999998888888765433 4457887764
No 44
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=34.50 E-value=81 Score=26.93 Aligned_cols=53 Identities=23% Similarity=0.449 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHHHhhc-cccCCCCccchHHHHHHHhcccC-------CcchHHHHHhhcC
Q 041583 282 QRLEQAAKAIFTTLEQRN-ASINSKAKISRRELRDEARKKIG-------DTGLLDFMIKHIH 335 (586)
Q Consensus 282 ~r~~~A~~~~v~vLr~~~-a~~~~~~wvsr~~LR~aark~IG-------dtgLLD~~LK~l~ 335 (586)
.++|.|++.+.++.+.-. .. ..|..|+..+|+.+.++.+| +..-++-+++.++
T Consensus 2 ~~~e~~~~~l~~~F~~fDd~d-g~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D 62 (92)
T cd05025 2 SELETAMETLINVFHAHSGKE-GDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELD 62 (92)
T ss_pred ChHHHHHHHHHHHHHHHhccc-CCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHC
Confidence 478999999999987652 21 12226999999999987444 3466888887764
No 45
>PF01506 HCV_NS5a: Hepatitis C virus non-structural 5a protein membrane anchor; InterPro: IPR002868 The molecular function of the non-structural 5a viral protein is uncertain. The NS5a protein is phosphorylated when expressed in mammalian cells. It is thought to interact with the dsRNA-dependent (interferon inducible) kinase PKR, P19525 from SWISSPROT [, ].; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1R7F_A 1R7E_A 1R7C_A 1R7G_A 1R7D_A.
Probab=34.50 E-value=23 Score=24.39 Aligned_cols=14 Identities=21% Similarity=0.835 Sum_probs=11.6
Q ss_pred hhhhHHHHhhhhhc
Q 041583 166 IMNLFDHLCTILHT 179 (586)
Q Consensus 166 iM~~WDrlC~~L~~ 179 (586)
+-|+||-+|+.|+-
T Consensus 4 l~diWdWvc~~l~~ 17 (23)
T PF01506_consen 4 LWDIWDWVCRVLRD 17 (23)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46899999998863
No 46
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=34.30 E-value=25 Score=41.16 Aligned_cols=47 Identities=26% Similarity=0.709 Sum_probs=33.6
Q ss_pred cEEe-ecCCCCCCCCCeEeecCCCccccccccccCCCCCCCCceecCCC
Q 041583 534 TVDC-VCGAKDDDGERMVACDICQVWQHTRCNSIADNEVVPSVFKCRAC 581 (586)
Q Consensus 534 ~VrC-iCG~~dDDGe~MIqCD~C~vWQH~~CvGI~~~~~~p~~f~C~~C 581 (586)
-+.| .||...|-+ ...-|+.|.+-+|+-|............|+|+.|
T Consensus 68 crvCe~c~~~gD~~-kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~ 115 (694)
T KOG4443|consen 68 CRVCEACGTTGDPK-KFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKC 115 (694)
T ss_pred ceeeeeccccCCcc-cccccccccccccccccCCccccccCcccccHHH
Confidence 3556 688766666 5667999999999999887644333367777665
No 47
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=32.90 E-value=29 Score=42.80 Aligned_cols=47 Identities=30% Similarity=0.716 Sum_probs=36.8
Q ss_pred EEe-ecCCC---CCCCCCeEeecCCCccccccccccCCCCCCCCceecCCCCCC
Q 041583 535 VDC-VCGAK---DDDGERMVACDICQVWQHTRCNSIADNEVVPSVFKCRACTAA 584 (586)
Q Consensus 535 VrC-iCG~~---dDDGe~MIqCD~C~vWQH~~CvGI~~~~~~p~~f~C~~C~~~ 584 (586)
-.| +||-. ..||++.|+|..|..-.=..|+....++ ..=.|+.|+.+
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~---g~~~cp~c~t~ 66 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSE---GNQCCPQCNTR 66 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhc---CCccCCccCCc
Confidence 348 89974 5789999999999999999999665443 55578888753
No 48
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=31.90 E-value=20 Score=35.92 Aligned_cols=97 Identities=23% Similarity=0.389 Sum_probs=54.5
Q ss_pred CCCCCceeeeCCCCCHHHHHHHHHhhhhhhhhceeeeeeeeeecccccceeccceeEEecccc--Cccc---cccccCCC
Q 041583 456 PLPPAELIVAPKDVTVDELKLIVECSLRDTYCMMEKVVVKEIKMGQNQVFWGAGDVWVRGWGL--DLDT---ELRFEGGA 530 (586)
Q Consensus 456 ~~pP~Elv~lp~~aTv~eLK~ea~r~frD~Y~~~r~f~~~~l~~g~e~g~v~sg~v~vrG~~~--~~e~---~~~~e~g~ 530 (586)
.+|||++.+--....+.-++.-+...-|+--..++=|. .+| |. .|.++.|...++|.-. .+++ .|.
T Consensus 25 ~~p~~~v~~eG~kT~i~N~~~i~~~l~R~~~~~~ky~~-~EL--gt-~~~~~~~~~ii~G~~~~~~i~~~l~~yi----- 95 (201)
T PRK12336 25 SIPEPKIFIEGKTTILTNFGEIADALNRDPDHLMKFLQ-REL--GT-AGKIEGGRAVFNGKFTEEDIQAAIDAYV----- 95 (201)
T ss_pred ecCCceEEEEcCcEEEecHHHHHHHHCCCHHHHHHHHH-HHh--CC-cceecCCEEEEEeeeCHHHHHHHHHHHH-----
Confidence 48999988877543444445545444444444333222 122 00 3445445788888831 1222 232
Q ss_pred CCCcEEe-ecCCCC-----CCCCCeEeecCCCcccccc
Q 041583 531 DDWTVDC-VCGAKD-----DDGERMVACDICQVWQHTR 562 (586)
Q Consensus 531 d~~~VrC-iCG~~d-----DDGe~MIqCD~C~vWQH~~ 562 (586)
..-|.| .|+.++ ++.-.++.|+.|+-..-..
T Consensus 96 -~~yV~C~~C~~pdT~l~k~~~~~~l~C~aCGa~~~v~ 132 (201)
T PRK12336 96 -DEYVICSECGLPDTRLVKEDRVLMLRCDACGAHRPVK 132 (201)
T ss_pred -HheEECCCCCCCCcEEEEcCCeEEEEcccCCCCcccc
Confidence 356899 899964 3445678999998765443
No 49
>TIGR00043 metalloprotein, YbeY/UPF0054 family. This minimally protein family is represented by a single member sequence only in nearly every bacterium. Crystallography demonstrates metal-binding activity, possibly to nickel. It is a predicted to be a metallohydrolase, and somewhat more weakly to be a metalloproteinase.
Probab=31.19 E-value=12 Score=34.02 Aligned_cols=14 Identities=36% Similarity=0.807 Sum_probs=12.8
Q ss_pred cccceeeccCccce
Q 041583 135 ILHGVVHCNGFGHL 148 (586)
Q Consensus 135 llHGviH~NGfGHL 148 (586)
+.||+.|..||-|-
T Consensus 77 ~iHG~LHLlGyDH~ 90 (110)
T TIGR00043 77 TVHGLLHLLGYDHE 90 (110)
T ss_pred HHHHHHHHcCCCCC
Confidence 67999999999995
No 50
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=30.66 E-value=47 Score=28.05 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=17.0
Q ss_pred eeeCCCCCHHHHHHHHHhhh
Q 041583 463 IVAPKDVTVDELKLIVECSL 482 (586)
Q Consensus 463 v~lp~~aTv~eLK~ea~r~f 482 (586)
+-+++.+||+|||...+..+
T Consensus 16 ~~v~~~~TV~~LK~~I~~~~ 35 (73)
T cd01791 16 VKCNPDDTIGDLKKLIAAQT 35 (73)
T ss_pred EEeCCCCcHHHHHHHHHHHh
Confidence 46789999999999998665
No 51
>PLN02189 cellulose synthase
Probab=29.01 E-value=36 Score=41.97 Aligned_cols=47 Identities=28% Similarity=0.653 Sum_probs=37.0
Q ss_pred EEe-ecCCC---CCCCCCeEeecCCCccccccccccCCCCCCCCceecCCCCCC
Q 041583 535 VDC-VCGAK---DDDGERMVACDICQVWQHTRCNSIADNEVVPSVFKCRACTAA 584 (586)
Q Consensus 535 VrC-iCG~~---dDDGe~MIqCD~C~vWQH~~CvGI~~~~~~p~~f~C~~C~~~ 584 (586)
-.| +||-. +.||+..|+|..|..-.=..|+-...++ ..=.|+.|+.+
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~e---g~q~CpqCkt~ 85 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERRE---GTQNCPQCKTR 85 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhc---CCccCcccCCc
Confidence 368 99985 5789999999999999989999665433 55578888753
No 52
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=28.42 E-value=1.7e+02 Score=34.17 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=48.0
Q ss_pred CcceEEEEEEeeCcchhhhccCCCCCCCce-------------------eeeCCCCCHHHH-HHHHHhhhhhhhhceeee
Q 041583 433 DNLMRLKCRVSPSYNELATQLTRPLPPAEL-------------------IVAPKDVTVDEL-KLIVECSLRDTYCMMEKV 492 (586)
Q Consensus 433 ~~~l~~~c~v~~~~~~~~~~~~~~~pP~El-------------------v~lp~~aTv~eL-K~ea~r~frD~Y~~~r~f 492 (586)
+..+.++|++.|.++.......+-.||+|. -|.+++||..+. +..|...++|+....-..
T Consensus 6 ~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNGT 85 (607)
T KOG0240|consen 6 ECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTKETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNGT 85 (607)
T ss_pred CCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecccccccceeeeecCCCccHHHHHHHHHHHHHHHHhccccee
Confidence 567999999999887443333333333333 356789999888 444444555554443222
Q ss_pred eeeeeecccccceeccc-eeEEecccc
Q 041583 493 VVKEIKMGQNQVFWGAG-DVWVRGWGL 518 (586)
Q Consensus 493 ~~~~l~~g~e~g~v~sg-~v~vrG~~~ 518 (586)
. ++ -|+-++| +-.+.|.+.
T Consensus 86 v----fa---YGqT~sGKTytm~G~~~ 105 (607)
T KOG0240|consen 86 V----FA---YGQTGSGKTYTMEGIGH 105 (607)
T ss_pred E----EE---ecCCCCCcceeecccCC
Confidence 2 22 5666778 777777765
No 53
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=28.37 E-value=48 Score=27.93 Aligned_cols=20 Identities=35% Similarity=0.449 Sum_probs=17.0
Q ss_pred eeeCCCCCHHHHHHHHHhhh
Q 041583 463 IVAPKDVTVDELKLIVECSL 482 (586)
Q Consensus 463 v~lp~~aTv~eLK~ea~r~f 482 (586)
|-+++.+||++||.+.+..+
T Consensus 16 l~v~~~~TV~~LK~~I~~~~ 35 (78)
T cd01804 16 LSVPPDETVEGLKKRISQRL 35 (78)
T ss_pred EEECCcCHHHHHHHHHHHHh
Confidence 66789999999999998655
No 54
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=27.66 E-value=63 Score=29.65 Aligned_cols=42 Identities=21% Similarity=0.041 Sum_probs=29.6
Q ss_pred cccCCCChhhHHHHHHHHHHhhhcCCCCcchHHHHH-HHhhcccc
Q 041583 377 HTSTLMPGQDVYADVLTLYKNVLLGYPESHTVSLAA-RAILDCKN 420 (586)
Q Consensus 377 ~~~~~~~~~~v~~Dl~~lY~~vL~~yp~~~~~~~Aa-~~iLD~K~ 420 (586)
..+. |-++..+|+.-+++|...=|++...+-.|| ..+-||+|
T Consensus 59 ~~Y~--s~~ef~~Dv~LI~~N~~~yNg~~s~~~~~A~~l~~d~~~ 101 (109)
T cd05492 59 EKYT--SLEEFKADALLLLHNTAIFHGADSEQYDAARWLYRDTCH 101 (109)
T ss_pred CCCC--CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 3455 899999999999999887454444444444 55557765
No 55
>KOG3277 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.47 E-value=37 Score=33.41 Aligned_cols=26 Identities=27% Similarity=0.714 Sum_probs=21.9
Q ss_pred CCcEEe-ecCCC---------CCCCCCeEeecCCCc
Q 041583 532 DWTVDC-VCGAK---------DDDGERMVACDICQV 557 (586)
Q Consensus 532 ~~~VrC-iCG~~---------dDDGe~MIqCD~C~v 557 (586)
.-...| +|+.. +.+|.-.|||++|++
T Consensus 77 ~l~yTCkvCntRs~ktisk~AY~~GvVivqC~gC~~ 112 (165)
T KOG3277|consen 77 QLAYTCKVCNTRSTKTISKQAYEKGVVIVQCPGCKN 112 (165)
T ss_pred EEEEEeeccCCccccccChhhhhCceEEEECCCCcc
Confidence 356889 99983 688999999999986
No 56
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=26.91 E-value=14 Score=31.87 Aligned_cols=95 Identities=18% Similarity=0.273 Sum_probs=49.7
Q ss_pred CCCCcee-eeCCCCCHHHHHHHHHhhhhhhhhceeeeeeeeeecccccceeccceeEEeccccCccc-cccccCCCCCCc
Q 041583 457 LPPAELI-VAPKDVTVDELKLIVECSLRDTYCMMEKVVVKEIKMGQNQVFWGAGDVWVRGWGLDLDT-ELRFEGGADDWT 534 (586)
Q Consensus 457 ~pP~Elv-~lp~~aTv~eLK~ea~r~frD~Y~~~r~f~~~~l~~g~e~g~v~sg~v~vrG~~~~~e~-~~~~e~g~d~~~ 534 (586)
++|-+++ .||.+.++++|+....+.+++.--..+...+..-+...+ ....+..-....+ .+.. +..
T Consensus 11 ld~~~vL~~LP~~~~l~~l~~fl~~~l~~~~~~~~~~~i~~~l~~~~-------~~~~~~~l~~~~~~~v~i-----~~~ 78 (109)
T PF10367_consen 11 LDPIDVLKLLPDDWPLSDLSDFLCKSLRKYSNRKRESQIEKNLLKSE-------NLQLKYELVKLRSRSVVI-----TES 78 (109)
T ss_pred CCHHHHHHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHhhcCceEEE-----CCC
Confidence 4455544 589999999999999999986543333222111111000 0111111000111 1111 122
Q ss_pred EEe-ecCCCCCCCCCeEeecCCCccccccccc
Q 041583 535 VDC-VCGAKDDDGERMVACDICQVWQHTRCNS 565 (586)
Q Consensus 535 VrC-iCG~~dDDGe~MIqCD~C~vWQH~~CvG 565 (586)
..| +||..-.++.+.+-. |+.-.|..|..
T Consensus 79 ~~C~vC~k~l~~~~f~~~p--~~~v~H~~C~~ 108 (109)
T PF10367_consen 79 TKCSVCGKPLGNSVFVVFP--CGHVVHYSCIK 108 (109)
T ss_pred CCccCcCCcCCCceEEEeC--CCeEEeccccc
Confidence 339 999987776555554 44778999963
No 57
>PRK09706 transcriptional repressor DicA; Reviewed
Probab=26.32 E-value=1.2e+02 Score=27.79 Aligned_cols=89 Identities=7% Similarity=-0.026 Sum_probs=60.1
Q ss_pred hhhhHHHHhhhhhcceeEEeecccccccchhhhhccccCCccCCccccccccCCCCCCHHHHHHHHHHhhccchhhhhcc
Q 041583 166 IMNLFDHLCTILHTQKISVHDVLVKRCMDLRLLHCVTYGCSWFGKWDYKFCHGSFGVTEHKYNRAIQILSSLELKRIIHD 245 (586)
Q Consensus 166 iM~~WDrlC~~L~~RkVSv~DvSkK~~mdlRlLh~va~g~~W~g~WGY~fg~Gsfgvt~~~Y~~Aie~lss~pL~~~~~~ 245 (586)
.|.|-+||-.....+.+|..+++++-|+...-+.-+-. |.-..+.+...+..+++ +++++.++..
T Consensus 3 ~~~~g~rlk~~R~~~gltq~~lA~~~gvs~~~is~~E~--------------g~~~p~~~~l~~la~~l-~vs~~~l~~g 67 (135)
T PRK09706 3 NLTLGQRIRYRRKQLKLSQRSLAKAVKVSHVSISQWER--------------DETEPTGKNLFALAKAL-QCSPTWLLFG 67 (135)
T ss_pred hhhHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc--------------CCCCCCHHHHHHHHHHH-CcCHHHHhcC
Confidence 46688999988888999999999999999877664433 33346666666666666 5777776643
Q ss_pred cCCCC------------cccchhhhhhhcccccccc
Q 041583 246 FGNTG------------RGRVIGKIIHLYMNASDTQ 269 (586)
Q Consensus 246 ~~~~~------------~~~~~~~ii~~Y~~lS~~~ 269 (586)
..... .....+.++..|++|++.+
T Consensus 68 ~~~~~~~~~~~~~~~~~l~~~~~~ll~~~~~L~~~~ 103 (135)
T PRK09706 68 DEDKQPTPPVPLNQPVELSEDQKELLELFDALPESE 103 (135)
T ss_pred CCcCCCCCcccccCCCCCCHHHHHHHHHHHHCCHHH
Confidence 21111 1133467777888887653
No 58
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=24.66 E-value=54 Score=32.76 Aligned_cols=39 Identities=23% Similarity=0.614 Sum_probs=28.8
Q ss_pred EEe-ecCCC-----CCCCCCeEeecCCCccccccccccCCCCCCCCceecCCCCC
Q 041583 535 VDC-VCGAK-----DDDGERMVACDICQVWQHTRCNSIADNEVVPSVFKCRACTA 583 (586)
Q Consensus 535 VrC-iCG~~-----dDDGe~MIqCD~C~vWQH~~CvGI~~~~~~p~~f~C~~C~~ 583 (586)
+.| +|+.+ .+. +..+.|+.|+.-+|..|..- . .||+|.+
T Consensus 153 fiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~~--~-------~CpkC~R 197 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFRK--K-------SCPKCAR 197 (202)
T ss_pred CCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcCC--C-------CCCCcHh
Confidence 446 67763 233 35899999999999999983 1 2999975
No 59
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=24.55 E-value=27 Score=36.38 Aligned_cols=49 Identities=27% Similarity=0.790 Sum_probs=22.4
Q ss_pred EEe-ecCCC-------CCC--CCCeEeecCCC-ccccc--cccccCCCC------------CCCCceecCCCCC
Q 041583 535 VDC-VCGAK-------DDD--GERMVACDICQ-VWQHT--RCNSIADNE------------VVPSVFKCRACTA 583 (586)
Q Consensus 535 VrC-iCG~~-------dDD--Ge~MIqCD~C~-vWQH~--~CvGI~~~~------------~~p~~f~C~~C~~ 583 (586)
-.| +||.. .++ |.++..|.-|+ .|.+. .|..=.+.+ +.-..++|..|+.
T Consensus 173 g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~~~e~~~~~rve~C~~C~~ 246 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTDHEKLEYFTVEGEPAYRVEVCESCGS 246 (290)
T ss_dssp SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---SS-EEE--------SEEEEEETTTTE
T ss_pred CcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCCCcceeeEecCCCCcEEEEECCcccc
Confidence 468 78884 222 78888999888 45544 344322211 1126788999974
No 60
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=24.34 E-value=69 Score=38.47 Aligned_cols=51 Identities=29% Similarity=0.496 Sum_probs=35.2
Q ss_pred CCCcEEe-ecCCCCCCCCCeEeecCCCccccccccccCCCCCCCCceecCCCCCC
Q 041583 531 DDWTVDC-VCGAKDDDGERMVACDICQVWQHTRCNSIADNEVVPSVFKCRACTAA 584 (586)
Q Consensus 531 d~~~VrC-iCG~~dDDGe~MIqCD~C~vWQH~~CvGI~~~~~~p~~f~C~~C~~~ 584 (586)
....++| +||.+-|+- -.||..|+.-+- .|+.-...-..+..|.|+.|.-.
T Consensus 1114 ~~~~vdc~~cg~~i~~~--~~~c~ec~~kfP-~CiasG~pIt~~~fWlC~~CkH~ 1165 (1189)
T KOG2041|consen 1114 NSAKVDCSVCGAKIDPY--DLQCSECQTKFP-VCIASGRPITDNIFWLCPRCKHR 1165 (1189)
T ss_pred CccceeeeecCCcCCcc--CCCChhhcCcCc-eeeccCCccccceEEEccccccc
Confidence 4566999 899986665 489999987554 35543322234578999999754
No 61
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=23.56 E-value=65 Score=33.83 Aligned_cols=96 Identities=21% Similarity=0.269 Sum_probs=73.5
Q ss_pred ccccceeeccCccc---eEeeec---CCCCCcccchhhhhhhHHHHhhhhhcceeEEeecccccccchhhhhccccC---
Q 041583 134 HILHGVVHCNGFGH---LLSISG---SKDGSNYLCEEQIMNLFDHLCTILHTQKISVHDVLVKRCMDLRLLHCVTYG--- 204 (586)
Q Consensus 134 HllHGviH~NGfGH---Ll~vnG---~eggS~~lsG~~iM~~WDrlC~~L~~RkVSv~DvSkK~~mdlRlLh~va~g--- 204 (586)
.=+=++|=-||-|. |-+++| ...|.=.|.|..|.++ =..=.||++++.-=+.-....+...-.|+.|
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~----~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p 103 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASL----SPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYP 103 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhc----CHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCc
Confidence 33457788899997 556666 3577778899888762 2334578999998888889999999999999
Q ss_pred -CccCCccccccccCCCCCCHHHHHHHHHHhhccchhhhhc
Q 041583 205 -CSWFGKWDYKFCHGSFGVTEHKYNRAIQILSSLELKRIIH 244 (586)
Q Consensus 205 -~~W~g~WGY~fg~Gsfgvt~~~Y~~Aie~lss~pL~~~~~ 244 (586)
.+||++| +++.++.+.++|..+-+..+..
T Consensus 104 ~~~~~~~~-----------~~~D~~~v~~aL~~~~~~~la~ 133 (258)
T COG1120 104 HLGLFGRP-----------SKEDEEIVEEALELLGLEHLAD 133 (258)
T ss_pred ccccccCC-----------CHhHHHHHHHHHHHhCcHHHhc
Confidence 4666655 5778888989999998887755
No 62
>PRK00016 metal-binding heat shock protein; Provisional
Probab=23.27 E-value=24 Score=34.17 Aligned_cols=14 Identities=36% Similarity=0.971 Sum_probs=12.8
Q ss_pred cccceeeccCccce
Q 041583 135 ILHGVVHCNGFGHL 148 (586)
Q Consensus 135 llHGviH~NGfGHL 148 (586)
+.||+.|..||=|.
T Consensus 117 ~iHG~LHLlGYDH~ 130 (159)
T PRK00016 117 TVHGILHLLGYDHI 130 (159)
T ss_pred HHHhhHHhcCCCCC
Confidence 67999999999995
No 63
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=23.10 E-value=80 Score=24.51 Aligned_cols=20 Identities=30% Similarity=0.278 Sum_probs=16.6
Q ss_pred eeeCCCCCHHHHHHHHHhhh
Q 041583 463 IVAPKDVTVDELKLIVECSL 482 (586)
Q Consensus 463 v~lp~~aTv~eLK~ea~r~f 482 (586)
+-+|+++|+.+||...++.+
T Consensus 12 ~~~~~~~ti~~lK~~i~~~~ 31 (69)
T cd01769 12 LEVSPDDTVAELKAKIAAKE 31 (69)
T ss_pred EEECCCChHHHHHHHHHHHH
Confidence 45788999999999998654
No 64
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=23.03 E-value=73 Score=26.81 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=16.5
Q ss_pred eeCCCCCHHHHHHHHHhhhh
Q 041583 464 VAPKDVTVDELKLIVECSLR 483 (586)
Q Consensus 464 ~lp~~aTv~eLK~ea~r~fr 483 (586)
-+++++||.|||.+.+..+.
T Consensus 18 ~v~~~~TV~~lK~~I~~~~~ 37 (80)
T cd01792 18 SLRDSMTVSELKQQIAQKIG 37 (80)
T ss_pred EcCCCCcHHHHHHHHHHHhC
Confidence 35789999999999987663
No 65
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=23.02 E-value=37 Score=26.80 Aligned_cols=12 Identities=25% Similarity=0.797 Sum_probs=8.5
Q ss_pred CceecCCCCCCC
Q 041583 574 SVFKCRACTAAV 585 (586)
Q Consensus 574 ~~f~C~~C~~~l 585 (586)
..|+|..|..+|
T Consensus 17 ~~fIC~~CE~~i 28 (46)
T PF10764_consen 17 GKFICSDCEKEI 28 (46)
T ss_pred CeEehHHHHHHh
Confidence 677777777654
No 66
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=22.98 E-value=39 Score=28.68 Aligned_cols=35 Identities=26% Similarity=0.637 Sum_probs=27.8
Q ss_pred CCCcEEe-ecCCCCCCCCCeEeecC--CCccccccccccCC
Q 041583 531 DDWTVDC-VCGAKDDDGERMVACDI--CQVWQHTRCNSIAD 568 (586)
Q Consensus 531 d~~~VrC-iCG~~dDDGe~MIqCD~--C~vWQH~~CvGI~~ 568 (586)
..+...| +|+.+ .| -.|+|.. |...+|..|.....
T Consensus 33 ~~~~~~C~~C~~~--~G-a~i~C~~~~C~~~fH~~CA~~~~ 70 (90)
T PF13771_consen 33 RRRKLKCSICKKK--GG-ACIGCSHPGCSRSFHVPCARKAG 70 (90)
T ss_pred HHhCCCCcCCCCC--CC-eEEEEeCCCCCcEEChHHHccCC
Confidence 3466678 89975 46 7999985 99999999987653
No 67
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]
Probab=22.89 E-value=58 Score=36.78 Aligned_cols=41 Identities=29% Similarity=0.316 Sum_probs=34.0
Q ss_pred cCCCCCCCceeeeCCCCCHHHHHHHHHhhhhhhhhceeeee
Q 041583 453 LTRPLPPAELIVAPKDVTVDELKLIVECSLRDTYCMMEKVV 493 (586)
Q Consensus 453 ~~~~~pP~Elv~lp~~aTv~eLK~ea~r~frD~Y~~~r~f~ 493 (586)
+++.+-||+-+.+|++.++++.|+-+++.|.|-|-.+..|.
T Consensus 182 ~~pdL~~P~pl~fppd~~vq~v~e~Ve~~f~~~~G~~e~F~ 222 (505)
T COG3046 182 LPPDLLPPKPLKFPPDEIVQEVKERVERLFPDNFGQVEGFG 222 (505)
T ss_pred CCCcCCCCCCCCCCCcchhHHHHHHHHhhCCCCCCccccCC
Confidence 33446678889999999999999999999999887776664
No 68
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=22.76 E-value=10 Score=28.41 Aligned_cols=41 Identities=27% Similarity=0.536 Sum_probs=29.1
Q ss_pred e-ecCCCCCCCCCeEeecCCCccccccccccCCCCCCCCceecCCCC
Q 041583 537 C-VCGAKDDDGERMVACDICQVWQHTRCNSIADNEVVPSVFKCRACT 582 (586)
Q Consensus 537 C-iCG~~dDDGe~MIqCD~C~vWQH~~CvGI~~~~~~p~~f~C~~C~ 582 (586)
| ||-...++++.++... |+-.+|..|+.---. ....||.|+
T Consensus 3 C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~----~~~~CP~CR 44 (44)
T PF13639_consen 3 CPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLK----RNNSCPVCR 44 (44)
T ss_dssp ETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHH----HSSB-TTTH
T ss_pred CcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHH----hCCcCCccC
Confidence 5 7777666677788887 999999999765432 134888874
No 69
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=22.66 E-value=1.4e+02 Score=22.15 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=25.4
Q ss_pred ccchhhHHHHHHHHHHHHHhhccccCCCCccchHHHHHHHhccc
Q 041583 278 QWGVQRLEQAAKAIFTTLEQRNASINSKAKISRRELRDEARKKI 321 (586)
Q Consensus 278 rWs~~r~~~A~~~~v~vLr~~~a~~~~~~wvsr~~LR~aark~I 321 (586)
.||.++++ +-|+.+|..++.+. .+|.+|.+.|++++
T Consensus 3 tWs~~~L~-------~wL~~~gi~~~~~~-~~rd~Ll~~~k~~y 38 (38)
T PF10281_consen 3 TWSDSDLK-------SWLKSHGIPVPKSA-KTRDELLKLAKKNY 38 (38)
T ss_pred CCCHHHHH-------HHHHHcCCCCCCCC-CCHHHHHHHHHHhC
Confidence 37766655 46777887653333 59999999999864
No 70
>PF02130 UPF0054: Uncharacterized protein family UPF0054; InterPro: IPR002036 These, as yet, uncharacterised proteins are of 17 to 21 kDa. They contain a conserved region with three histidines at the C terminus. The protein family is represented by a single member sequence only in nearly every bacterium. The crystal structure of the protein from the hyperthermophilic bacteria Aquifex aeolicus has been determined. The overall fold consists of one central alpha-helix surrounded by a four-stranded beta-sheet and four other alpha-helices. Structure-based homology analysis reveals a good resemblance to the metal-dependent proteinases such as collagenases and gelatinases. However, experimental tests for collagenase and gelatinase-type function show no detectable activity under standard assay conditions [].; GO: 0046872 metal ion binding; PDB: 1TVI_A 1OZ9_A 1XM5_A 1XAX_A.
Probab=22.55 E-value=21 Score=33.82 Aligned_cols=14 Identities=36% Similarity=0.888 Sum_probs=11.6
Q ss_pred cccceeeccCccce
Q 041583 135 ILHGVVHCNGFGHL 148 (586)
Q Consensus 135 llHGviH~NGfGHL 148 (586)
+.||+.|.-||-|.
T Consensus 112 ~vHG~LHLlGyDH~ 125 (145)
T PF02130_consen 112 LVHGLLHLLGYDHE 125 (145)
T ss_dssp HHHHHHHHTT-SST
T ss_pred HHHHHHHHcCCCCC
Confidence 57999999999995
No 71
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=21.69 E-value=67 Score=25.76 Aligned_cols=13 Identities=31% Similarity=0.756 Sum_probs=11.2
Q ss_pred CCCCceecCCCCC
Q 041583 571 VVPSVFKCRACTA 583 (586)
Q Consensus 571 ~~p~~f~C~~C~~ 583 (586)
.+|+.|.|+.|..
T Consensus 30 ~Lp~~w~CP~C~a 42 (50)
T cd00730 30 DLPDDWVCPVCGA 42 (50)
T ss_pred HCCCCCCCCCCCC
Confidence 4789999999975
No 72
>PRK02268 hypothetical protein; Provisional
Probab=21.56 E-value=58 Score=31.41 Aligned_cols=28 Identities=21% Similarity=0.712 Sum_probs=23.6
Q ss_pred CccccccccCCCCCCHHHHHHHHHHhhc
Q 041583 209 GKWDYKFCHGSFGVTEHKYNRAIQILSS 236 (586)
Q Consensus 209 g~WGY~fg~Gsfgvt~~~Y~~Aie~lss 236 (586)
-+|||.|..|-|-++++.|+--.++++.
T Consensus 111 ~~Wg~~fr~g~~eI~e~Df~~I~~am~~ 138 (141)
T PRK02268 111 KNWGYQFRFGHFEISKHDFETIASAMTV 138 (141)
T ss_pred chhhHhhcCCcEecCHHHHHHHHHHhcc
Confidence 4899999999999999999876666654
No 73
>COG3685 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.34 E-value=89 Score=31.06 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=50.9
Q ss_pred cccchhhhhccchhhHHHHHHHHHHHHHhhccccCCCCccchHHHHHHHhcccCCc----chHHHHHhhcCCee
Q 041583 269 QLITISDLLQWGVQRLEQAAKAIFTTLEQRNASINSKAKISRRELRDEARKKIGDT----GLLDFMIKHIHKII 338 (586)
Q Consensus 269 ~L~t~~dL~rWs~~r~~~A~~~~v~vLr~~~a~~~~~~wvsr~~LR~aark~IGdt----gLLD~~LK~l~~~~ 338 (586)
..+|+.|+|-=.-+++-.|++-+.++|..+ .+...=++||.+.-+||-.| ..||=|++.+|++.
T Consensus 2 ~~kt~~d~f~~~LrD~y~aEkq~~kaL~km------a~~~~~~~Lka~~E~Hl~ET~~qi~rLe~Vfe~~g~~~ 69 (167)
T COG3685 2 AMKTLEDLFIDTLRDIYAAEKQILKALPKM------ARRAQYPELKAAIEKHLEETKGQIERLEQVFERLGKKA 69 (167)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 357888999756677888999999999765 23455789999999999887 48999999877654
Done!