Query 041585
Match_columns 155
No_of_seqs 100 out of 304
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 14:38:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041585.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041585hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 99.9 3E-25 1E-29 165.5 14.9 107 22-137 11-118 (130)
2 4i1k_A B3 domain-containing tr 99.6 8.8E-15 3E-19 110.9 12.9 93 20-133 45-137 (146)
3 1yel_A AT1G16640; CESG, protei 99.5 1.4E-13 4.9E-18 98.1 10.9 92 24-136 10-101 (104)
4 1pqh_A Aspartate 1-decarboxyla 85.7 9.1 0.00031 28.4 11.5 75 26-121 29-105 (143)
5 3oug_A Aspartate 1-decarboxyla 85.4 8.2 0.00028 27.6 10.4 75 26-121 15-91 (114)
6 1na6_A Ecorii, restriction end 84.7 1.3 4.4E-05 38.2 5.3 97 21-123 17-123 (404)
7 2c45_A Aspartate 1-decarboxyla 82.5 12 0.0004 27.7 9.0 75 26-121 12-88 (139)
8 3o27_A Putative uncharacterize 59.5 14 0.00048 24.0 4.1 41 93-135 22-64 (68)
9 1vpr_A Luciferase; beta barrel 52.0 12 0.00041 30.8 3.5 21 116-137 259-279 (374)
10 2e63_A KIAA1787 protein; struc 50.4 11 0.00039 28.3 3.0 25 111-136 117-141 (170)
11 2k75_A Uncharacterized protein 50.3 50 0.0017 22.4 6.2 43 71-135 41-86 (106)
12 1uhe_A Aspartate 1-decarboxyla 43.8 77 0.0026 21.8 7.0 48 68-121 15-62 (97)
13 3plx_B Aspartate 1-decarboxyla 42.8 83 0.0028 21.9 7.0 48 68-121 16-63 (102)
14 2k50_A Replication factor A re 42.5 74 0.0025 21.3 6.8 50 70-135 45-98 (115)
15 2qcp_X Cation efflux system pr 42.2 36 0.0012 22.2 4.2 27 109-135 51-77 (80)
16 2ki8_A Tungsten formylmethanof 40.9 31 0.0011 24.8 4.0 41 105-147 60-101 (146)
17 2vb2_X Copper protein, cation 39.7 38 0.0013 22.6 4.0 27 109-135 59-85 (88)
18 1oa8_A Ataxin-1; RNA binding, 39.6 36 0.0012 24.8 4.1 52 68-121 64-125 (133)
19 1yfb_A Transition state regula 39.3 65 0.0022 19.9 4.8 20 105-124 29-48 (59)
20 2yuj_A Ubiquitin fusion degrad 38.8 35 0.0012 26.3 4.2 35 110-146 147-181 (190)
21 3e0e_A Replication protein A; 36.6 54 0.0019 21.7 4.5 32 71-120 41-72 (97)
22 2nap_A Protein (periplasmic ni 34.7 33 0.0011 30.5 4.0 44 105-148 648-691 (723)
23 4ggc_A P55CDC, cell division c 34.0 1.3E+02 0.0045 21.8 6.8 34 70-103 45-88 (318)
24 2l66_A SSO7C4, transcriptional 32.1 48 0.0016 19.6 3.3 20 105-124 19-38 (53)
25 4dok_A Similarity to chalcone- 31.4 59 0.002 25.0 4.5 34 105-138 131-164 (208)
26 2iv2_X Formate dehydrogenase H 30.9 43 0.0015 29.8 4.1 44 105-148 613-656 (715)
27 3qve_A HMG box-containing prot 30.9 21 0.00071 26.3 1.6 102 14-119 16-132 (139)
28 3ie4_A GRAM-negative binding p 30.7 89 0.003 21.6 4.9 56 67-123 13-79 (107)
29 1mvf_D MAZE protein, PEMI-like 29.7 23 0.00078 22.9 1.5 37 87-129 6-42 (82)
30 3hx1_A SLR1951 protein; P74513 29.2 44 0.0015 23.5 3.2 38 107-147 91-128 (131)
31 2yuj_A Ubiquitin fusion degrad 28.7 2E+02 0.0067 22.0 7.1 78 30-122 33-111 (190)
32 2l55_A SILB,silver efflux prot 27.8 87 0.003 20.4 4.2 29 109-137 45-74 (82)
33 3dm3_A Replication factor A; p 27.3 1.2E+02 0.0041 20.5 5.0 10 111-120 66-75 (105)
34 2ln7_A LPXTG-SITE transpeptida 27.3 48 0.0016 23.8 3.1 41 94-136 58-98 (147)
35 2z0t_A Putative uncharacterize 27.3 38 0.0013 23.7 2.4 24 108-135 30-53 (109)
36 2rcz_A Tight junction protein 26.9 68 0.0023 19.3 3.5 15 107-121 34-49 (81)
37 2i6v_A General secretion pathw 26.8 32 0.0011 21.9 1.9 15 106-120 31-45 (87)
38 4gga_A P55CDC, cell division c 26.7 1.8E+02 0.0061 22.9 6.8 46 69-115 124-179 (420)
39 2vpz_A Thiosulfate reductase; 26.5 62 0.0021 29.1 4.3 44 105-148 654-699 (765)
40 2e7z_A Acetylene hydratase AHY 26.3 47 0.0016 29.5 3.5 44 105-148 632-675 (727)
41 1iuf_A Centromere ABP1 protein 24.9 21 0.0007 25.5 0.7 19 95-113 126-144 (144)
42 3ngh_A PDZ domain-containing p 24.4 1.1E+02 0.0039 19.6 4.4 16 106-121 38-53 (106)
43 2eaq_A LIM domain only protein 24.2 37 0.0013 21.4 1.8 15 107-121 41-55 (90)
44 2pa1_A PDZ and LIM domain prot 23.8 38 0.0013 21.3 1.8 16 106-121 38-53 (87)
45 2jmz_A Hypothetical protein MJ 23.7 42 0.0014 24.8 2.3 26 96-122 106-131 (186)
46 3m7a_A Uncharacterized protein 23.6 31 0.0011 25.1 1.5 24 95-120 117-140 (140)
47 2pkt_A PDZ and LIM domain prot 23.1 40 0.0014 21.4 1.8 14 107-120 40-53 (91)
48 1vc3_B L-aspartate-alpha-decar 23.0 1.9E+02 0.0064 19.8 7.4 48 68-121 16-64 (96)
49 3pjy_A Hypothetical signal pep 22.8 42 0.0014 24.2 2.0 22 95-120 103-126 (136)
50 1xne_A Hypothetical protein PF 22.1 42 0.0014 23.6 1.9 23 108-135 31-53 (113)
51 1t2w_A Sortase; transpeptidase 22.1 94 0.0032 22.0 3.8 41 94-136 52-97 (145)
52 2q3g_A PDZ and LIM domain prot 21.6 44 0.0015 21.0 1.8 16 106-121 39-54 (89)
53 3id1_A Regulator of sigma E pr 21.3 44 0.0015 21.7 1.8 15 106-120 14-28 (95)
54 3toj_A SET1/ASH2 histone methy 21.1 95 0.0032 23.4 3.9 23 111-133 111-141 (213)
55 2uzc_A Human pdlim5, PDZ and L 21.1 46 0.0016 20.8 1.8 16 106-121 39-54 (88)
56 2i4s_A General secretion pathw 21.0 43 0.0015 22.1 1.7 15 106-120 49-63 (105)
57 2f5y_A Regulator of G-protein 20.9 42 0.0014 21.3 1.6 15 106-120 36-50 (91)
58 3iuw_A Activating signal coint 20.9 45 0.0015 22.3 1.7 15 109-123 35-50 (83)
59 2vsp_A PDZ domain-containing p 20.7 47 0.0016 21.0 1.8 16 106-121 39-54 (91)
60 2d9r_A Conserved hypothetical 20.5 1.4E+02 0.0049 20.4 4.4 87 14-120 11-99 (104)
61 2kv8_A RGS12, regulator of G-p 20.2 47 0.0016 20.6 1.7 15 107-121 36-50 (83)
62 1m5z_A GRIP, AMPA receptor int 20.2 44 0.0015 21.1 1.6 16 106-121 44-59 (91)
63 1hmj_A RPB5, protein (subunit 20.1 81 0.0028 20.8 2.8 22 105-126 42-63 (78)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.93 E-value=3e-25 Score=165.50 Aligned_cols=107 Identities=26% Similarity=0.479 Sum_probs=91.6
Q ss_pred CeEEEEEeecCCCCCCCCEEeehHHHHHcCCCCCCccccccccCCCCCeEEEEEECCCCcEEEEEEEEeCCCCceEEcCC
Q 041585 22 PWSITKILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLVFKKWATSNSYVLINH 101 (155)
Q Consensus 22 pw~fkK~LT~SDV~~~~RLvLPk~~~e~~ilP~l~~~~~~~~~~~~~gi~V~v~D~dt~~~w~~~~k~w~~~~syvL~~G 101 (155)
...|.|+||+|||+..+||+||+++|+.| ||.++... ..+|+.|.+.|. .|+.|+|+|.+|.++++|+|++|
T Consensus 11 ~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~-lP~~~~~~------~~~~~~l~l~D~-~Gk~W~fr~~~~~~~~~~~Lt~G 82 (130)
T 1wid_A 11 EALFEKAVTPSDVGKLNRLVIPKHHAEKH-FPLPSSNV------SVKGVLLNFEDV-NGKVWRFRYSYWNSSQSYVLTKG 82 (130)
T ss_dssp EEEEEEECCTTTTSSSCCEEECHHHHTTT-SCCCSSCC------SSCCEEEEEEET-TTEEEEEEEEEETTTTEEEEESS
T ss_pred cceEEEEEehHHcCCCCEEEeCHHHHHhh-CCcccccc------CCCcEEEEEEeC-CCCEEEEEEEEECCCCceEEcCC
Confidence 36899999999998889999999999998 79877431 247899999996 78999999999988889999999
Q ss_pred chHhhhhhcCCCCCCEEEEEEcCCC-CeEEEEEEeec
Q 041585 102 WTADFVRRRELAAGDEIGMCWDSFY-SRFNFSILKRA 137 (155)
Q Consensus 102 W~~~fVr~~~Lk~GD~I~f~wd~~~-~~l~F~vl~r~ 137 (155)
|. .||++++|++||+|+|+++... ..|...+-++.
T Consensus 83 W~-~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~ 118 (130)
T 1wid_A 83 WS-RFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRS 118 (130)
T ss_dssp HH-HHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCC
T ss_pred hH-HHHHHcCCCCCCEEEEEEecCCCcEEEEEEEECC
Confidence 99 9999999999999999999754 45655544444
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.61 E-value=8.8e-15 Score=110.93 Aligned_cols=93 Identities=17% Similarity=0.151 Sum_probs=77.1
Q ss_pred CCCeEEEEEeecCCCCCCCCEEeehHHHHHcCCCCCCccccccccCCCCCeEEEEEECCCCcEEEEEEEEeCCCCceEEc
Q 041585 20 TYPWSITKILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLVFKKWATSNSYVLI 99 (155)
Q Consensus 20 ~~pw~fkK~LT~SDV~~~~RLvLPk~~~e~~ilP~l~~~~~~~~~~~~~gi~V~v~D~dt~~~w~~~~k~w~~~~syvL~ 99 (155)
.+| .|.|+||+|||....+|.||++.++.| ||..+ ..|.+.|. |+.|.+++.++. .+++|+
T Consensus 45 ~~P-~Fvk~l~~S~v~~~~~L~IP~~Fa~~~-lp~~~-------------~~i~L~~~--gk~W~v~~~~~~--~~~~ls 105 (146)
T 4i1k_A 45 TNP-FFRVVLRPSYLYRGCIMYLPSGFAEKY-LSGIS-------------GFIKVQLA--EKQWPVRCLYKA--GRAKFS 105 (146)
T ss_dssp SSC-EEEEECCGGGSSTTCCEECCHHHHHHH-CTTCC-------------SEEEEEET--TEEEEEEEEEET--TEEEEC
T ss_pred CCC-EEEEEECchhcCCCcEEEeCHHHHHHh-CCCCC-------------eEEEEEEC--CcEEEEEEEEeC--CcEEEC
Confidence 567 688999999997667899999999999 67532 46778885 599999999976 379999
Q ss_pred CCchHhhhhhcCCCCCCEEEEEEcCCCCeEEEEE
Q 041585 100 NHWTADFVRRRELAAGDEIGMCWDSFYSRFNFSI 133 (155)
Q Consensus 100 ~GW~~~fVr~~~Lk~GD~I~f~wd~~~~~l~F~v 133 (155)
+||. .||++++|++||.|.|--... ..+.|.|
T Consensus 106 ~GW~-~Fv~dn~L~~GD~cvFeli~~-~~~~f~V 137 (146)
T 4i1k_A 106 QGWY-EFTLENNLGEGDVCVFELLRT-RDFVLKV 137 (146)
T ss_dssp TTHH-HHHHHTTCCTTCEEEEEECSS-SSCEEEE
T ss_pred CchH-HHHHHcCCCCCCEEEEEEecC-CceEEEE
Confidence 9999 999999999999999988754 3444555
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.51 E-value=1.4e-13 Score=98.10 Aligned_cols=92 Identities=17% Similarity=0.273 Sum_probs=75.2
Q ss_pred EEEEEeecCCCCCCCCEEeehHHHHHcCCCCCCccccccccCCCCCeEEEEEECCCCcEEEEEEEEeCCCCceEEcCCch
Q 041585 24 SITKILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLVFKKWATSNSYVLINHWT 103 (155)
Q Consensus 24 ~fkK~LT~SDV~~~~RLvLPk~~~e~~ilP~l~~~~~~~~~~~~~gi~V~v~D~dt~~~w~~~~k~w~~~~syvL~~GW~ 103 (155)
.|-|+|+++|. ..+|.||++.++.| .+.+ +..|.+.|. .|+.|.+++.++. +.++|++||.
T Consensus 10 ~F~K~l~~~~~--~~~L~IP~~F~~~~-~~~~-------------~~~v~L~~~-~G~~W~v~~~~~~--~~~~l~~GW~ 70 (104)
T 1yel_A 10 QFMKPFISEKS--SKSLEIPLGFNEYF-PAPF-------------PITVDLLDY-SGRSWTVRMKKRG--EKVFLTVGWE 70 (104)
T ss_dssp EEEEECCHHHH--TTCEECCHHHHTTC-CCCC-------------CSEEEEEET-TSCEEEEEEEEET--TEEEECTTHH
T ss_pred CEEEEECCCCc--cceEECCHHHHHhc-CccC-------------CCEEEEECC-CCCEEEEEEEEEC--CcEEEccChH
Confidence 68899999984 79999999999875 3432 246888895 6899999999864 5899999999
Q ss_pred HhhhhhcCCCCCCEEEEEEcCCCCeEEEEEEee
Q 041585 104 ADFVRRRELAAGDEIGMCWDSFYSRFNFSILKR 136 (155)
Q Consensus 104 ~~fVr~~~Lk~GD~I~f~wd~~~~~l~F~vl~r 136 (155)
+||++++|++||.+.|.-+. ++.|...|.++
T Consensus 71 -~Fv~~~~L~~GD~lvF~~~~-~~~f~V~If~~ 101 (104)
T 1yel_A 71 -NFVKDNNLEDGKYLQFIYDR-DRTFYVIIYGH 101 (104)
T ss_dssp -HHHHHHTCCTTCEEEEEECS-SSEEEEEEECS
T ss_pred -HHHHHcCCCCCCEEEEEEcC-CCeEEEEEECC
Confidence 99999999999999998864 45666666654
No 4
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=85.70 E-value=9.1 Score=28.39 Aligned_cols=75 Identities=9% Similarity=0.103 Sum_probs=53.9
Q ss_pred EEEeecCCCCCCCCEEeehHHHHH-cCCCCCCccccccccCCCCCeEEEEEECCCCcEEEEEEEEeC-CCCceEEcCCch
Q 041585 26 TKILTRSDLGHLSRLLVQTRLAER-YVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLVFKKWA-TSNSYVLINHWT 103 (155)
Q Consensus 26 kK~LT~SDV~~~~RLvLPk~~~e~-~ilP~l~~~~~~~~~~~~~gi~V~v~D~dt~~~w~~~~k~w~-~~~syvL~~GW~ 103 (155)
+-+.|..|++..|-+.|..+.++. -|+| +-.|.|+|.+.|..++-..-.-. .++.-.|+| .
T Consensus 29 RatVT~AdL~Y~GSITID~dLldaAgIl~---------------~EkV~IvNvnNG~RfeTYvI~GerGSG~I~lNG--A 91 (143)
T 1pqh_A 29 RVKVTHADLHYEGTCAIDQDFLDAAGILE---------------NEAIDIWNVTNGKRFSTYAIAAERGSRIISVNG--A 91 (143)
T ss_dssp EEECCBCCSSSCCCEEEEHHHHHHHTCCT---------------TCEEEEEETTTCCEEEEEEEEECTTCCCEECCG--G
T ss_pred ceEEeccccccceeEEECHHHHHHcCCCC---------------CCEEEEEECCCCceEEEEEEEccCCCceEEech--H
Confidence 457899999989999999999874 3444 35788999988876654333332 244467766 2
Q ss_pred HhhhhhcCCCCCCEEEEE
Q 041585 104 ADFVRRRELAAGDEIGMC 121 (155)
Q Consensus 104 ~~fVr~~~Lk~GD~I~f~ 121 (155)
-.+..++||.|.+.
T Consensus 92 ----AArl~~~GD~VII~ 105 (143)
T 1pqh_A 92 ----AAHCASVGDIVIIA 105 (143)
T ss_dssp ----GGGTCCTTCEEEEE
T ss_pred ----HHccCCCCCEEEEE
Confidence 56788999988864
No 5
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=85.41 E-value=8.2 Score=27.60 Aligned_cols=75 Identities=15% Similarity=0.178 Sum_probs=53.2
Q ss_pred EEEeecCCCCCCCCEEeehHHHHH-cCCCCCCccccccccCCCCCeEEEEEECCCCcEEEEEEEEeC-CCCceEEcCCch
Q 041585 26 TKILTRSDLGHLSRLLVQTRLAER-YVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLVFKKWA-TSNSYVLINHWT 103 (155)
Q Consensus 26 kK~LT~SDV~~~~RLvLPk~~~e~-~ilP~l~~~~~~~~~~~~~gi~V~v~D~dt~~~w~~~~k~w~-~~~syvL~~GW~ 103 (155)
+-+.|..|+...|-+.|..+.++. .|+| +-.|.|++.+.|..++-..-.-. .++.-.|+| .
T Consensus 15 ratVT~a~L~Y~GSitID~~Ll~aA~i~~---------------~E~V~I~NvnNG~Rf~TYvI~GerGSg~I~lNG--A 77 (114)
T 3oug_A 15 YATVTGKDLFYVGSITIDSEIMKQANIIE---------------NEKVQVVNLNNGERLETYVIKGEPNSKTIALNG--P 77 (114)
T ss_dssp EEECCEEESSCC-CEEEEHHHHHHTTCCT---------------TBEEEEEETTTCCEEEEEEEEECTTSCCEEEEG--G
T ss_pred ceEEecccccccceEEECHHHHHHcCCCc---------------CCEEEEEECCCCceEEEEEEEccCCCCEEEeCC--H
Confidence 567899999989999999999875 3333 35788999988876654433332 244577776 2
Q ss_pred HhhhhhcCCCCCCEEEEE
Q 041585 104 ADFVRRRELAAGDEIGMC 121 (155)
Q Consensus 104 ~~fVr~~~Lk~GD~I~f~ 121 (155)
-.|..++||.|.+.
T Consensus 78 ----AAr~~~~GD~vII~ 91 (114)
T 3oug_A 78 ----AARRCEIGDQLFII 91 (114)
T ss_dssp ----GGGGCCTTCEEEEE
T ss_pred ----HHhccCCCCEEEEE
Confidence 56778899998864
No 6
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=84.74 E-value=1.3 Score=38.22 Aligned_cols=97 Identities=15% Similarity=0.172 Sum_probs=63.7
Q ss_pred CCeEEEEEeecCCCC----CCCCEEeehHHHHHcCCCCCCccccccccCCCCCeEEEEEECCCCcEEEEEEEEeC-----
Q 041585 21 YPWSITKILTRSDLG----HLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLVFKKWA----- 91 (155)
Q Consensus 21 ~pw~fkK~LT~SDV~----~~~RLvLPk~~~e~~ilP~l~~~~~~~~~~~~~gi~V~v~D~dt~~~w~~~~k~w~----- 91 (155)
+-..+-|.|+..|+| ++..+.+|+..+... ||.++.... + .....+.+-+-|.+.... ..++.+-.
T Consensus 17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~l-fp~lg~~~e-~--~~~~~~~~~l~d~d~p~t-d~~~twYn~R~~~ 91 (404)
T 1na6_A 17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKL-FPSINHTRE-L--NPSVFLTAHVSSHDCPDS-EARAIYYNSAHFG 91 (404)
T ss_dssp SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHH-CGGGCCCSS-S--SCEEEEEEEESSSCCCCE-EEEEEEECGGGTT
T ss_pred cchheeEEcccccCCCCCCcccccCCchHHHHHh-cccCCCccc-c--CCcceeEEEeccCCCceE-EEEEEEecccccC
Confidence 345689999999996 378899999878885 898884421 1 011223344445455555 77776443
Q ss_pred -CCCceEEcCCchHhhhhhcCCCCCCEEEEEEc
Q 041585 92 -TSNSYVLINHWTADFVRRRELAAGDEIGMCWD 123 (155)
Q Consensus 92 -~~~syvL~~GW~~~fVr~~~Lk~GD~I~f~wd 123 (155)
..+-|-|+. |-+.+.=.+...+||...|-..
T Consensus 92 ~tRnEyRLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 92 KTRNEKRITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp SCCCEEEEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred CCCCceEEee-cCCCCcccccCCCCCEEEEEEe
Confidence 223588983 6656666788999998887643
No 7
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=82.46 E-value=12 Score=27.68 Aligned_cols=75 Identities=15% Similarity=0.133 Sum_probs=53.8
Q ss_pred EEEeecCCCCCCCCEEeehHHHHH-cCCCCCCccccccccCCCCCeEEEEEECCCCcEEEEEEEEeC-CCCceEEcCCch
Q 041585 26 TKILTRSDLGHLSRLLVQTRLAER-YVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLVFKKWA-TSNSYVLINHWT 103 (155)
Q Consensus 26 kK~LT~SDV~~~~RLvLPk~~~e~-~ilP~l~~~~~~~~~~~~~gi~V~v~D~dt~~~w~~~~k~w~-~~~syvL~~GW~ 103 (155)
+-+.|..|++..|-+.|-.+.++. -|+| +-.|.|+|.+.|..++-..-.-. .++.-.|+| .
T Consensus 12 RatVT~AdL~Y~GSITID~dLldaAgIl~---------------~EkV~IvNvnNG~RfeTYvI~GerGSG~I~lNG--A 74 (139)
T 2c45_A 12 RATVTCADLHYVGSVTIDADLMDAADLLE---------------GEQVTIVDIDNGARLVTYAITGERGSGVIGING--A 74 (139)
T ss_dssp EEECCCEESSSCCEEEEEHHHHHHTTCCS---------------SCCEEEEETTTCCEEEECEEEECTTTTCEEEES--S
T ss_pred ceEEeccccccceeeEECHHHHHHcCCCC---------------CCEEEEEECCCCceEEEEEEEccCCCCEEEEch--H
Confidence 567899999989999999999875 3433 34678999988876654333322 244577876 2
Q ss_pred HhhhhhcCCCCCCEEEEE
Q 041585 104 ADFVRRRELAAGDEIGMC 121 (155)
Q Consensus 104 ~~fVr~~~Lk~GD~I~f~ 121 (155)
-.|..+.||.|.+.
T Consensus 75 ----AArl~~~GD~vII~ 88 (139)
T 2c45_A 75 ----AAHLVHPGDLVILI 88 (139)
T ss_dssp ----TTTTSCTTCEEEEE
T ss_pred ----HHccCCCCCEEEEE
Confidence 56778899998864
No 8
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=59.51 E-value=14 Score=24.02 Aligned_cols=41 Identities=10% Similarity=0.214 Sum_probs=30.7
Q ss_pred CCceEEcCCchHhhhhhcCCCCCCEEEEEEcCCCCeE--EEEEEe
Q 041585 93 SNSYVLINHWTADFVRRRELAAGDEIGMCWDSFYSRF--NFSILK 135 (155)
Q Consensus 93 ~~syvL~~GW~~~fVr~~~Lk~GD~I~f~wd~~~~~l--~F~vl~ 135 (155)
+.+|+++= =.++++.-++++||++.+.-+..++.+ |++=++
T Consensus 22 ~etyYInI--PaeI~kaLgIk~gD~fel~ve~kdgeIvLcykRVK 64 (68)
T 3o27_A 22 HTTFYLLI--PKDIAEALDIKPDDTFILNMEQKDGDIVLSYKRVK 64 (68)
T ss_dssp CCCEEEEE--CHHHHHHTTCCTTCCEEEEEEEETTEEEEEEEECG
T ss_pred ceEEEEeC--cHHHHHHhCCCCCCEEEEEEecCCCeEEEEehhhh
Confidence 44677652 249999999999999999888777766 665443
No 9
>1vpr_A Luciferase; beta barrel, fatty acid binding protein, lipocalin, PH regulation, luminescent protein; 1.80A {Lingulodinium polyedrum} SCOP: b.60.1.7
Probab=52.03 E-value=12 Score=30.82 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=17.3
Q ss_pred CEEEEEEcCCCCeEEEEEEeec
Q 041585 116 DEIGMCWDSFYSRFNFSILKRA 137 (155)
Q Consensus 116 D~I~f~wd~~~~~l~F~vl~r~ 137 (155)
-.|+|||...+++ ||++-+|+
T Consensus 259 rkigffwemesg~-cfrierra 279 (374)
T 1vpr_A 259 RKIGFFWEMESGR-CFRIERRA 279 (374)
T ss_dssp EEEEEEEETTTTE-EEEEEEEE
T ss_pred hhceeEEEecCCc-EEEEeecc
Confidence 4799999987765 89988876
No 10
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.44 E-value=11 Score=28.29 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=19.7
Q ss_pred CCCCCCEEEEEEcCCCCeEEEEEEee
Q 041585 111 ELAAGDEIGMCWDSFYSRFNFSILKR 136 (155)
Q Consensus 111 ~Lk~GD~I~f~wd~~~~~l~F~vl~r 136 (155)
.|++||.|+|+.+ .++.++|.|-..
T Consensus 117 ~l~~Gd~ig~~~~-~~G~l~~~iNg~ 141 (170)
T 2e63_A 117 QLGEGDRVGVERT-VAGELRLWVNGR 141 (170)
T ss_dssp GCCSSCCEEEEEC-TTSCEEEEESSC
T ss_pred ccCCCCEEEEEEc-CCcEEEEEECCc
Confidence 4689999999987 558888887543
No 11
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=50.33 E-value=50 Score=22.37 Aligned_cols=43 Identities=19% Similarity=0.263 Sum_probs=26.6
Q ss_pred EEEEEECCCCcEEEEEEEEeCCCCceEEcCCchHhhhhhcCCCCCCEEEEE---EcCCCCeEEEEEEe
Q 041585 71 RVSVWDCDTNSMHRLVFKKWATSNSYVLINHWTADFVRRRELAAGDEIGMC---WDSFYSRFNFSILK 135 (155)
Q Consensus 71 ~V~v~D~dt~~~w~~~~k~w~~~~syvL~~GW~~~fVr~~~Lk~GD~I~f~---wd~~~~~l~F~vl~ 135 (155)
.+.|-| +|| .+++..|... |++||.|.+. -+.+.+++...+-+
T Consensus 41 ~~~l~D-eTG---~I~~tlW~~~------------------l~~Gdvv~i~ng~v~~~~g~~~L~v~~ 86 (106)
T 2k75_A 41 QGYIED-DTA---RIRISSFGKQ------------------LQDSDVVRIDNARVAQFNGYLSLSVGD 86 (106)
T ss_dssp EEEEEC-SSC---EEEEEEESSC------------------CCTTEEEEEEEEEEEEETTEEEEEECT
T ss_pred EEEEEc-CCC---eEEEEEEcCc------------------cCCCCEEEEEeeEEeEECCEEEEEECC
Confidence 455666 566 4666666532 8999999885 23345666655543
No 12
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=43.84 E-value=77 Score=21.85 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=33.5
Q ss_pred CCeEEEEEECCCCcEEEEEEEEeCCCCceEEcCCchHhhhhhcCCCCCCEEEEE
Q 041585 68 EGLRVSVWDCDTNSMHRLVFKKWATSNSYVLINHWTADFVRRRELAAGDEIGMC 121 (155)
Q Consensus 68 ~gi~V~v~D~dt~~~w~~~~k~w~~~~syvL~~GW~~~fVr~~~Lk~GD~I~f~ 121 (155)
++-.|.|+|.+.|..++-.--.-..|+.-.|+| - -.|..++||.|.+.
T Consensus 15 ~~E~V~IvNvnNG~RfeTYvI~GerSG~I~lNG--A----AArl~~~GD~vII~ 62 (97)
T 1uhe_A 15 EGMKVEIVDVNNGERFSTYVILGKKRGEICVNG--A----AARKVAIGDVVIIL 62 (97)
T ss_dssp TTCEEEEEETTTCCEEEEECEEECSTTCEEEEG--G----GGGGCCTTCEEEEE
T ss_pred CCCEEEEEECCCCceEEEEEEeeccCCeEEEch--H----HHccCCCCCEEEEE
Confidence 556889999988876654444333355677876 2 56778899988864
No 13
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=42.79 E-value=83 Score=21.89 Aligned_cols=48 Identities=15% Similarity=0.079 Sum_probs=33.2
Q ss_pred CCeEEEEEECCCCcEEEEEEEEeCCCCceEEcCCchHhhhhhcCCCCCCEEEEE
Q 041585 68 EGLRVSVWDCDTNSMHRLVFKKWATSNSYVLINHWTADFVRRRELAAGDEIGMC 121 (155)
Q Consensus 68 ~gi~V~v~D~dt~~~w~~~~k~w~~~~syvL~~GW~~~fVr~~~Lk~GD~I~f~ 121 (155)
++-.|.|+|.+.|..++-..-.-..++.-.|+| . -.|..++||.|.+.
T Consensus 16 ~~E~V~I~NvnNG~Rf~TYvI~GeGSG~I~lNG--A----AArl~~~GD~vII~ 63 (102)
T 3plx_B 16 EYEKVQVVNVNNGARFETYTIATQEEGVVCLNG--A----AARLAEVGDKVIIM 63 (102)
T ss_dssp TTCEEEEEETTTCCEEEEECEEESSTTCEEEEG--G----GGGGCCTTCEEEEE
T ss_pred CCCEEEEEECCCCcEEEEEEEEcCCCCEEEeCc--H----HHhccCCCCEEEEE
Confidence 456789999988887654444433344577776 2 56778999988864
No 14
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=42.54 E-value=74 Score=21.29 Aligned_cols=50 Identities=22% Similarity=0.218 Sum_probs=32.4
Q ss_pred eEEEEEECCCCcEEEEEEEEeCCCCceEEcCCchHhhhhhcCCCCCCEEEEEEcC----CCCeEEEEEEe
Q 041585 70 LRVSVWDCDTNSMHRLVFKKWATSNSYVLINHWTADFVRRRELAAGDEIGMCWDS----FYSRFNFSILK 135 (155)
Q Consensus 70 i~V~v~D~dt~~~w~~~~k~w~~~~syvL~~GW~~~fVr~~~Lk~GD~I~f~wd~----~~~~l~F~vl~ 135 (155)
..+.+.| +|| .+++..|... .|. ...|++||.|.|.-.. +++++...+-+
T Consensus 45 ~~~~l~D-~TG---~I~~t~w~~~-------~~~-----~~~l~~G~vv~i~g~~v~~~f~g~~qL~~~~ 98 (115)
T 2k50_A 45 ANVIIAD-DTG---ELRAVFWTEN-------IKL-----LKKFREGDVIRIKDVNIRGGFGGRKEAHLMP 98 (115)
T ss_dssp EEEEEEE-TTE---EEEEEEETTG-------GGG-----GGTCCTTSEEEEEEEEECCCSSSSCEEEECT
T ss_pred EEEEEEe-CCC---eEEEEEeCch-------hhh-----hhcCCCCCEEEEEeeEEccccCCeEEEEECC
Confidence 5577888 677 7778888642 121 2568999999986543 45566555544
No 15
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=42.21 E-value=36 Score=22.21 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=19.4
Q ss_pred hcCCCCCCEEEEEEcCCCCeEEEEEEe
Q 041585 109 RRELAAGDEIGMCWDSFYSRFNFSILK 135 (155)
Q Consensus 109 ~~~Lk~GD~I~f~wd~~~~~l~F~vl~ 135 (155)
-.+|++||.|.|--....+.+...-|+
T Consensus 51 l~~lk~Gd~V~F~~~~~~~~~~it~i~ 77 (80)
T 2qcp_X 51 MSEIKTGDKVAFNFVQQGNLSLLQDIK 77 (80)
T ss_dssp ECCCCTTCEEEEEEEEETTEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEEeCCEEEEEEEE
Confidence 467999999999776666766444443
No 16
>2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2); beta-barrel, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus}
Probab=40.90 E-value=31 Score=24.82 Aligned_cols=41 Identities=12% Similarity=0.000 Sum_probs=28.8
Q ss_pred hhhhhcCCCCCCEEEEEEcCCCCeEEEEEE-eecCCCceeeecc
Q 041585 105 DFVRRRELAAGDEIGMCWDSFYSRFNFSIL-KRAPAPTIIVQDH 147 (155)
Q Consensus 105 ~fVr~~~Lk~GD~I~f~wd~~~~~l~F~vl-~r~~~~~~~~~~~ 147 (155)
+-.++.+|+.||.|.++-... ...+.+. .+-.+.++.+|.|
T Consensus 60 ~dA~~lGI~dGd~V~V~s~~G--~v~~~a~t~~i~~g~V~~p~g 101 (146)
T 2ki8_A 60 EDWNALGLQEGDRVKVKTEFG--EVVVFAKKGDVPKGMIFIPMG 101 (146)
T ss_dssp HHHHHHTCCTTCEEEEECSSC--EEEEEEEECSCCTTEEEEESS
T ss_pred HHHHHcCCCCCCEEEEEeCCc--EEEEEEeCCCcCCCEEEEECC
Confidence 567889999999999998764 4434443 3445667777776
No 17
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=39.67 E-value=38 Score=22.55 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=19.6
Q ss_pred hcCCCCCCEEEEEEcCCCCeEEEEEEe
Q 041585 109 RRELAAGDEIGMCWDSFYSRFNFSILK 135 (155)
Q Consensus 109 ~~~Lk~GD~I~f~wd~~~~~l~F~vl~ 135 (155)
-.+|++||.|.|--.+..+.+...-|+
T Consensus 59 l~~lk~Gd~V~F~~~~~~~~~~it~i~ 85 (88)
T 2vb2_X 59 MSEIKTGDKVAFNFVQQGNLSLLQDIK 85 (88)
T ss_dssp ECCCCTTCEEEEEEEEETTEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEEeCCEEEEEEEE
Confidence 468999999999777666776444443
No 18
>1oa8_A Ataxin-1; RNA binding, high mobility group homology, HMG, RNA-binding, dimerization; 1.7A {Homo sapiens} SCOP: b.145.1.1
Probab=39.62 E-value=36 Score=24.83 Aligned_cols=52 Identities=13% Similarity=0.195 Sum_probs=33.1
Q ss_pred CCeEEEEEECCCCcEEEEEEEEeCCCCceEEcCCchHhh----------hhhcCCCCCCEEEEE
Q 041585 68 EGLRVSVWDCDTNSMHRLVFKKWATSNSYVLINHWTADF----------VRRRELAAGDEIGMC 121 (155)
Q Consensus 68 ~gi~V~v~D~dt~~~w~~~~k~w~~~~syvL~~GW~~~f----------Vr~~~Lk~GD~I~f~ 121 (155)
.|..+.-.++++ +.-.+.........-||...||. -| +..+.|+.||++.-.
T Consensus 64 ~g~v~ltF~~g~-~~~~v~~ev~~ehPFFV~gqGWs-Sc~P~~T~~~ygL~C~~L~vGDVClsl 125 (133)
T 1oa8_A 64 PGVAVIQFAVGE-HRAQVSVEVLVEYPFFVFGQGWS-SCCPERTSQLFDLPCSKLSVGDVCISL 125 (133)
T ss_dssp TTEEEEEEEETT-TTEEEEEEEETTCCEEETTTEEE-ESCHHHHHHHHCCCCEECCTTCEEEEE
T ss_pred CCeEEEEEeeCC-CccEEEEEecCCCCcEEcCCccc-ccCHhHhhHhhCCcceecccCCEEEec
Confidence 455555555544 33455555555667799999995 22 345678999997643
No 19
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=39.28 E-value=65 Score=19.85 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=17.8
Q ss_pred hhhhhcCCCCCCEEEEEEcC
Q 041585 105 DFVRRRELAAGDEIGMCWDS 124 (155)
Q Consensus 105 ~fVr~~~Lk~GD~I~f~wd~ 124 (155)
++.+.-+|++||.+.|+-+.
T Consensus 29 eiR~~Lgi~~Gd~l~i~~~~ 48 (59)
T 1yfb_A 29 ELRRTLGIAEKDALEIYVDD 48 (59)
T ss_dssp HHHHHTTCCTTCEEEEEEET
T ss_pred HHHHHcCCCCCCEEEEEEEC
Confidence 78899999999999998864
No 20
>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.84 E-value=35 Score=26.26 Aligned_cols=35 Identities=14% Similarity=0.423 Sum_probs=29.5
Q ss_pred cCCCCCCEEEEEEcCCCCeEEEEEEeecCCCceeeec
Q 041585 110 RELAAGDEIGMCWDSFYSRFNFSILKRAPAPTIIVQD 146 (155)
Q Consensus 110 ~~Lk~GD~I~f~wd~~~~~l~F~vl~r~~~~~~~~~~ 146 (155)
-.|-.||+|.+... +..+.|.|+.-.++.++.+++
T Consensus 147 stLT~Gd~I~I~~~--~~~y~l~V~e~kP~~aV~Iid 181 (190)
T 2yuj_A 147 ACLTTGDVIAINYN--EKIYELRVMETKPDKAVSIIE 181 (190)
T ss_dssp CEECTTCEEEEESS--SCEEEEEEEEESSSSSEECSS
T ss_pred cccccCCEEEEEeC--CEEEEEEEEEEcCCCeEEEEe
Confidence 34889999999764 588999999988888888876
No 21
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=36.58 E-value=54 Score=21.74 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=20.7
Q ss_pred EEEEEECCCCcEEEEEEEEeCCCCceEEcCCchHhhhhhcCCCCCCEEEE
Q 041585 71 RVSVWDCDTNSMHRLVFKKWATSNSYVLINHWTADFVRRRELAAGDEIGM 120 (155)
Q Consensus 71 ~V~v~D~dt~~~w~~~~k~w~~~~syvL~~GW~~~fVr~~~Lk~GD~I~f 120 (155)
.+.|.| +|| +.++.- |. +.+.. .|++||+|.+
T Consensus 41 ~~~l~D-eTG---~I~~tl------------W~-~~~~~-~i~~Gdvv~i 72 (97)
T 3e0e_A 41 SLFLKD-DTG---SIRGTL------------WN-ELADF-EVKKGDIAEV 72 (97)
T ss_dssp EEEEEE-TTE---EEEEEE------------EG-GGGGC-CCCTTCEEEE
T ss_pred EEEEEC-CCC---cEEEEE------------EC-Ccccc-ccCCCCEEEE
Confidence 456667 565 444544 44 44433 8999999998
No 22
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*
Probab=34.68 E-value=33 Score=30.47 Aligned_cols=44 Identities=11% Similarity=-0.023 Sum_probs=35.2
Q ss_pred hhhhhcCCCCCCEEEEEEcCCCCeEEEEEEeecCCCceeeecch
Q 041585 105 DFVRRRELAAGDEIGMCWDSFYSRFNFSILKRAPAPTIIVQDHA 148 (155)
Q Consensus 105 ~fVr~~~Lk~GD~I~f~wd~~~~~l~F~vl~r~~~~~~~~~~~~ 148 (155)
+-.++++|+.||.|.++-+...-++.-.|-.+-.+.++.+|+|-
T Consensus 648 ~dA~~lGI~~GD~V~v~s~~G~v~~~a~vt~~i~pg~V~~~~g~ 691 (723)
T 2nap_A 648 EDAARTGIKHGDSVIVETRRDAMELPARVSDVCRPGLIAVPFFD 691 (723)
T ss_dssp HHHHHHTCCTTCEEEEEETTEEEEEEEEEESSBCTTEEEEECCC
T ss_pred HHHHHcCCCCCCEEEEEeCCceEEEEEEECCCcCCCeEEEecCc
Confidence 55689999999999999987665666666677778889998874
No 23
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=33.95 E-value=1.3e+02 Score=21.83 Aligned_cols=34 Identities=15% Similarity=0.457 Sum_probs=20.0
Q ss_pred eEEEEEECCCCcE-EEEEE---------EEeCCCCceEEcCCch
Q 041585 70 LRVSVWDCDTNSM-HRLVF---------KKWATSNSYVLINHWT 103 (155)
Q Consensus 70 i~V~v~D~dt~~~-w~~~~---------k~w~~~~syvL~~GW~ 103 (155)
-+|.|||.++|+. ..+++ -.|..+++|+++++..
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~D 88 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS 88 (318)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT
T ss_pred CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECC
Confidence 4689999988763 22222 2333445677776554
No 24
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=32.06 E-value=48 Score=19.63 Aligned_cols=20 Identities=15% Similarity=0.398 Sum_probs=17.5
Q ss_pred hhhhhcCCCCCCEEEEEEcC
Q 041585 105 DFVRRRELAAGDEIGMCWDS 124 (155)
Q Consensus 105 ~fVr~~~Lk~GD~I~f~wd~ 124 (155)
.+.+.-+|++||.+.|.-+.
T Consensus 19 ~ir~~lgi~~Gd~v~i~~~~ 38 (53)
T 2l66_A 19 KVRQKFQIKEGDLVKVTFDE 38 (53)
T ss_dssp HHHHHSCCCTTCEEEEEECS
T ss_pred HHHHHcCcCCCCEEEEEEEC
Confidence 77889999999999998764
No 25
>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like protein, chalcone-isomerase like FOL isomerase; 1.70A {Arabidopsis thaliana}
Probab=31.43 E-value=59 Score=25.03 Aligned_cols=34 Identities=9% Similarity=0.101 Sum_probs=25.9
Q ss_pred hhhhhcCCCCCCEEEEEEcCCCCeEEEEEEeecC
Q 041585 105 DFVRRRELAAGDEIGMCWDSFYSRFNFSILKRAP 138 (155)
Q Consensus 105 ~fVr~~~Lk~GD~I~f~wd~~~~~l~F~vl~r~~ 138 (155)
.+.+...|++||.|.|.|.+.++.+..++...++
T Consensus 131 ~~F~~~~~~~G~~I~~~~~p~~G~L~i~~s~~G~ 164 (208)
T 4dok_A 131 GFFQSKYFKANSVITYHFSAKDGICEIGFETEGK 164 (208)
T ss_dssp HHHHTCEECTTCEEEEEECSSSCCEEEEEECTTS
T ss_pred HHhccCCCCCCCEEEEEEeCCCCeEEEEEEeCCE
Confidence 4556678999999999999887887656555444
No 26
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*
Probab=30.95 E-value=43 Score=29.77 Aligned_cols=44 Identities=7% Similarity=-0.106 Sum_probs=35.3
Q ss_pred hhhhhcCCCCCCEEEEEEcCCCCeEEEEEEeecCCCceeeecch
Q 041585 105 DFVRRRELAAGDEIGMCWDSFYSRFNFSILKRAPAPTIIVQDHA 148 (155)
Q Consensus 105 ~fVr~~~Lk~GD~I~f~wd~~~~~l~F~vl~r~~~~~~~~~~~~ 148 (155)
+-.++++|+.||.|.++-+...-++.-.|-.+-.+.++.+|.|.
T Consensus 613 ~dA~~lGI~~Gd~V~v~s~~G~v~~~a~vt~~i~pg~V~~~~g~ 656 (715)
T 2iv2_X 613 EDAKRLGIEDEALVWVHSRKGKIITRAQVSDRPNKGAIYMTYQW 656 (715)
T ss_dssp HHHHHHTCCTTCEEEEECSSCEEEEEEEEESSSCTTEEEECCCC
T ss_pred HHHHHhCCCCCCEEEEEeCCceEEEEEEECCCcCCCeEEEeccc
Confidence 66788999999999999887665565566667778889999875
No 27
>3qve_A HMG box-containing protein 1; SGC, HMG box transcription factor 1, HBP1, AXH domain, struc genomics consortium, transcription; 2.04A {Homo sapiens} PDB: 1v06_A
Probab=30.87 E-value=21 Score=26.31 Aligned_cols=102 Identities=17% Similarity=0.100 Sum_probs=49.5
Q ss_pred eeeecCCCC---eEEEEEeecCCCCCCCCEEeehHHHHHcCCCCCCcccc--ccccCCCCCeEEEEEECCCCcEEEEEEE
Q 041585 14 TKLDLFTYP---WSITKILTRSDLGHLSRLLVQTRLAERYVMPFLDEASR--SEVIGNPEGLRVSVWDCDTNSMHRLVFK 88 (155)
Q Consensus 14 ~~l~l~~~p---w~fkK~LT~SDV~~~~RLvLPk~~~e~~ilP~l~~~~~--~~~~~~~~gi~V~v~D~dt~~~w~~~~k 88 (155)
|.|++...+ |.--..|-.+|... ....|....... +..-+.... .+......++.+.-+++++...-.+.+.
T Consensus 16 T~i~f~~G~~~~w~~vedl~~~d~~~-~~~~~qs~~~k~--y~~~glklv~~~e~~~~~~~~v~ltF~~G~~~~~~V~le 92 (139)
T 3qve_A 16 TRLCFHKGSNKEWQDVEDFARAEGCD-NEEDLQMGIHKG--YGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVE 92 (139)
T ss_dssp CEEEESSSSCCSCEEHHHHHHHCC----------CTTTT--TTTTCEEEEEEEEEEETTEEEEEEEEECSCGGGCCEEEE
T ss_pred cEEEEcCCCccceeehhhhccccccc-hhhhhhhhhhcc--cCcCCcEEEEEEccccCCCcEEEEEEecCCccceEEEEe
Confidence 566666555 88777777666421 111121111111 111111110 1112223445555567655233444555
Q ss_pred EeCCCCceEEcCCchHhh----------hhhcCCCCCCEEE
Q 041585 89 KWATSNSYVLINHWTADF----------VRRRELAAGDEIG 119 (155)
Q Consensus 89 ~w~~~~syvL~~GW~~~f----------Vr~~~Lk~GD~I~ 119 (155)
.-....-||...||. -+ +..+.|+.||++.
T Consensus 93 ~~~ehPFFV~gqGWs-Sc~P~~T~~~ygL~C~~L~vGDvCl 132 (139)
T 3qve_A 93 CKLDHPFYVKNKGWS-SFYPSLTVVQHGIPCCEVHIGDVCL 132 (139)
T ss_dssp EETTCEEEETTTEEE-ESSHHHHHHHHCCCCEECCTTCEEC
T ss_pred ccCCCceEEecccce-eECcccchhhcCCcceecccCCEec
Confidence 545556699999995 22 3566789999873
No 28
>3ie4_A GRAM-negative binding protein 3; immunoglobulin fold, immune system; 1.45A {Drosophila melanogaster}
Probab=30.72 E-value=89 Score=21.63 Aligned_cols=56 Identities=21% Similarity=0.169 Sum_probs=29.9
Q ss_pred CCCeEEEEEECCCCcEEEEEEEEeCCCC--------ceE---EcCCchHhhhhhcCCCCCCEEEEEEc
Q 041585 67 PEGLRVSVWDCDTNSMHRLVFKKWATSN--------SYV---LINHWTADFVRRRELAAGDEIGMCWD 123 (155)
Q Consensus 67 ~~gi~V~v~D~dt~~~w~~~~k~w~~~~--------syv---L~~GW~~~fVr~~~Lk~GD~I~f~wd 123 (155)
+.|+.|.+-|-..=+..-|.++.-.... ..+ =.|.|. --=+.-.||.||+|-.|--
T Consensus 13 P~G~rvsipD~pgi~lf~fh~~iN~~~~~~~~g~~~~dit~~~~GrW~-~~d~~~~lk~GD~I~Ywv~ 79 (107)
T 3ie4_A 13 PKGFEVSIPDEEGITLFAFHGKLNEEMEGLEAGTWARDIVKAKNGRWT-FRDRITALKPGDTLYYWTY 79 (107)
T ss_dssp SSCEEEEEECCTTEEEEEEEEEESSCCCSSCCCSEEEEECCCBTTEEE-EEESSCCCCTTCEEEEEEE
T ss_pred CCCEEEEEcCCCCCEEEEEEEEeCCCCcCccccEeEEeEeEecCCEEE-EECCCceeCCCCEEEEEEE
Confidence 5889999887322233344444322210 011 123365 2225677999999986643
No 29
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=29.66 E-value=23 Score=22.86 Aligned_cols=37 Identities=19% Similarity=0.308 Sum_probs=26.5
Q ss_pred EEEeCCCCceEEcCCchHhhhhhcCCCCCCEEEEEEcCCCCeE
Q 041585 87 FKKWATSNSYVLINHWTADFVRRRELAAGDEIGMCWDSFYSRF 129 (155)
Q Consensus 87 ~k~w~~~~syvL~~GW~~~fVr~~~Lk~GD~I~f~wd~~~~~l 129 (155)
..+|++ ++.++- =+++++.-+|++||.|.+.-+ .+++
T Consensus 6 v~k~Gn--s~~v~i--Pk~~~~~lgl~~gd~v~i~~~--~~~i 42 (82)
T 1mvf_D 6 VKRWGN--SPAVRI--PATLMQALNLNIDDEVKIDLV--DGKL 42 (82)
T ss_dssp CEEETT--EEEEEC--CHHHHHHTTCCTTCBEEEEEE--TTEE
T ss_pred EEEECC--ccEEEE--CHHHHHHcCCCCCCEEEEEEE--CCEE
Confidence 456654 455542 248999999999999999875 4455
No 30
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=29.19 E-value=44 Score=23.48 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=20.3
Q ss_pred hhhcCCCCCCEEEEEEcCCCCeEEEEEEeecCCCceeeecc
Q 041585 107 VRRRELAAGDEIGMCWDSFYSRFNFSILKRAPAPTIIVQDH 147 (155)
Q Consensus 107 Vr~~~Lk~GD~I~f~wd~~~~~l~F~vl~r~~~~~~~~~~~ 147 (155)
+....|+.||+|.|= ....+.|.++.+..+.++--++|
T Consensus 91 i~~~~L~~GD~I~iG---~~~~~~~~~~~~d~~~~~~~~~~ 128 (131)
T 3hx1_A 91 VQEHIIQTGDEIVMG---PQVSVRYEYRRRDQFGTMLEHHH 128 (131)
T ss_dssp ESEEECCTTCEEECS---TTCEEEEEEECC-----------
T ss_pred eEeEECCCCCEEEEC---CEEEEEEEEecCCCCcccccCCC
Confidence 445889999999873 24556788888988888766655
No 31
>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.68 E-value=2e+02 Score=21.99 Aligned_cols=78 Identities=14% Similarity=0.194 Sum_probs=47.2
Q ss_pred ecCCCCCCCCEEeehHHHHHcCCCCCCccccccccCCCCCeEEEEEECCCCc-EEEEEEEEeCCCCceEEcCCchHhhhh
Q 041585 30 TRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTNS-MHRLVFKKWATSNSYVLINHWTADFVR 108 (155)
Q Consensus 30 T~SDV~~~~RLvLPk~~~e~~ilP~l~~~~~~~~~~~~~gi~V~v~D~dt~~-~w~~~~k~w~~~~syvL~~GW~~~fVr 108 (155)
...++...++++||...++.- -.+.. ...+...+....+++ .|-=.+-+....+. +.--.|+. +
T Consensus 33 ~r~~~~~GdKI~LP~SaL~~L--~~~~i---------~~Pm~F~l~n~~~~r~th~GVlEFsA~EG~-i~lP~wmm---~ 97 (190)
T 2yuj_A 33 DRSDVEKGGKIIMPPSALDQL--SRLNI---------TYPMLFKLTNKNSDRMTHCGVLEFVADEGI-CYLPHWMM---Q 97 (190)
T ss_dssp CCSTTTTTTEEECCHHHHHHH--HHTTC---------CSSCEEEEEETTTTEEEEEEEEECCCBTTB-EECCSHHH---H
T ss_pred cccccCCCCeEECcHHHHHHH--HHCCC---------CcCeEEEEecCCCCceEEEEEEEEecCCCe-EEeCHHHH---H
Confidence 456888889999999988762 11110 123555565554443 34333334344344 44457874 7
Q ss_pred hcCCCCCCEEEEEE
Q 041585 109 RRELAAGDEIGMCW 122 (155)
Q Consensus 109 ~~~Lk~GD~I~f~w 122 (155)
.-+|++||.|.+-.
T Consensus 98 ~L~l~~gd~V~v~~ 111 (190)
T 2yuj_A 98 NLLLEEGGLVQVES 111 (190)
T ss_dssp HHTCCTTEEEEEEE
T ss_pred hcCCCCCCEEEEEE
Confidence 77899999988754
No 32
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=27.80 E-value=87 Score=20.43 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=20.8
Q ss_pred hcCCCCCCEEEEEEcCCCC-eEEEEEEeec
Q 041585 109 RRELAAGDEIGMCWDSFYS-RFNFSILKRA 137 (155)
Q Consensus 109 ~~~Lk~GD~I~f~wd~~~~-~l~F~vl~r~ 137 (155)
-.+|++||.|.|--.+..+ .+...-|+..
T Consensus 45 l~~lk~Gd~V~F~~~~~~~g~~~it~i~~~ 74 (82)
T 2l55_A 45 PQGLKAGDRVAFSFRLDPHGMATLVTVAPQ 74 (82)
T ss_dssp CSSCSTTCEEEEEEEEETTTEEEEEEEEEC
T ss_pred hhcCCCCCEEEEEEEECCCCeEEEEEEEec
Confidence 4679999999997766665 6655555543
No 33
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=27.31 E-value=1.2e+02 Score=20.48 Aligned_cols=10 Identities=20% Similarity=0.557 Sum_probs=9.2
Q ss_pred CCCCCCEEEE
Q 041585 111 ELAAGDEIGM 120 (155)
Q Consensus 111 ~Lk~GD~I~f 120 (155)
.|++||+|.|
T Consensus 66 ~l~~Gdvv~i 75 (105)
T 3dm3_A 66 DVGRGDYVRV 75 (105)
T ss_dssp CCCTTCEEEE
T ss_pred ccCCCCEEEE
Confidence 8999999988
No 34
>2ln7_A LPXTG-SITE transpeptidase family protein; sortase, sortase family D, enzyme, protein binding; NMR {Bacillus anthracis}
Probab=27.29 E-value=48 Score=23.77 Aligned_cols=41 Identities=20% Similarity=0.247 Sum_probs=29.2
Q ss_pred CceEEcCCchHhhhhhcCCCCCCEEEEEEcCCCCeEEEEEEee
Q 041585 94 NSYVLINHWTADFVRRRELAAGDEIGMCWDSFYSRFNFSILKR 136 (155)
Q Consensus 94 ~syvL~~GW~~~fVr~~~Lk~GD~I~f~wd~~~~~l~F~vl~r 136 (155)
++++|.|+=..-|-+-..|+.||.|.+.. ....+.|.|-+.
T Consensus 58 gn~viaGH~~~~F~~L~~l~~GD~i~v~~--~~~~~~Y~V~~~ 98 (147)
T 2ln7_A 58 GHTVLSGHRDTVFTDLGQLKEKDTLVLEY--DNKTYTYEIQKI 98 (147)
T ss_dssp CEEEEEEECCCCSSHHHHSSTTCEEEEEE--TTEEEEEEEEEE
T ss_pred eeEEEEcccCChhhhhhcccCCCEEEEEE--CCcEEEEEEEeE
Confidence 35666654223577788899999999976 467888888653
No 35
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=27.29 E-value=38 Score=23.71 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=16.6
Q ss_pred hhcCCCCCCEEEEEEcCCCCeEEEEEEe
Q 041585 108 RRRELAAGDEIGMCWDSFYSRFNFSILK 135 (155)
Q Consensus 108 r~~~Lk~GD~I~f~wd~~~~~l~F~vl~ 135 (155)
+.+.++.||.|.| .+..+...|..
T Consensus 30 k~~~ikvGD~I~f----~~~~l~~~V~~ 53 (109)
T 2z0t_A 30 KRRQIKPGDIIIF----EGGKLKVKVKG 53 (109)
T ss_dssp TGGGCCTTCEEEE----GGGTEEEEEEE
T ss_pred hhhcCCCCCEEEE----CCCEEEEEEEE
Confidence 4567899999999 23356666654
No 36
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=26.86 E-value=68 Score=19.35 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=11.2
Q ss_pred hhhcC-CCCCCEEEEE
Q 041585 107 VRRRE-LAAGDEIGMC 121 (155)
Q Consensus 107 Vr~~~-Lk~GD~I~f~ 121 (155)
..+.+ |++||.|.=.
T Consensus 34 A~~aG~l~~GD~I~~i 49 (81)
T 2rcz_A 34 AARDGNIQEGDVVLKI 49 (81)
T ss_dssp HHHHSSCCTTCEEEEE
T ss_pred HHHCCCCCCCCEEEEE
Confidence 34557 9999999743
No 37
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=26.81 E-value=32 Score=21.87 Aligned_cols=15 Identities=20% Similarity=0.160 Sum_probs=12.3
Q ss_pred hhhhcCCCCCCEEEE
Q 041585 106 FVRRRELAAGDEIGM 120 (155)
Q Consensus 106 fVr~~~Lk~GD~I~f 120 (155)
...+.+|++||+|.=
T Consensus 31 ~A~~aGl~~GD~I~~ 45 (87)
T 2i6v_A 31 LFESIGLQDGDMAVA 45 (87)
T ss_dssp HHHHTTCCTTCEEEE
T ss_pred HHHHCCCCCCCEEEE
Confidence 556779999999983
No 38
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=26.67 E-value=1.8e+02 Score=22.88 Aligned_cols=46 Identities=11% Similarity=0.280 Sum_probs=25.9
Q ss_pred CeEEEEEECCCCcEE-E---------EEEEEeCCCCceEEcCCchHhhhhhcCCCCC
Q 041585 69 GLRVSVWDCDTNSMH-R---------LVFKKWATSNSYVLINHWTADFVRRRELAAG 115 (155)
Q Consensus 69 gi~V~v~D~dt~~~w-~---------~~~k~w~~~~syvL~~GW~~~fVr~~~Lk~G 115 (155)
+-+|.|||..+|+.- . ++.-.|..+++|++.++.. ..|+--.+..|
T Consensus 124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~D-g~v~iWd~~~~ 179 (420)
T 4gga_A 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS-AEVQLWDVQQQ 179 (420)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT-SCEEEEETTTT
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECC-CeEEEEEcCCC
Confidence 347899999887632 2 2233455556777776554 34444444433
No 39
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=26.46 E-value=62 Score=29.05 Aligned_cols=44 Identities=11% Similarity=0.025 Sum_probs=34.4
Q ss_pred hhhhhcCCCCCCEEEEEEcCCCCeE--EEEEEeecCCCceeeecch
Q 041585 105 DFVRRRELAAGDEIGMCWDSFYSRF--NFSILKRAPAPTIIVQDHA 148 (155)
Q Consensus 105 ~fVr~~~Lk~GD~I~f~wd~~~~~l--~F~vl~r~~~~~~~~~~~~ 148 (155)
+=.++++|+.||.|.++-+...-++ .-.|-.+-.+.++.+|+|.
T Consensus 654 ~dA~~lGI~~Gd~V~v~s~~G~v~~~~~a~vt~~i~pg~V~~~~g~ 699 (765)
T 2vpz_A 654 EEAKRLGLKEGDYVMLVNQDGVKEGPVRVKPTARIRKDCVYIVHGF 699 (765)
T ss_dssp HHHHHTTCCTTCEEEEEETTCCEEEEEEEECCSSBCTTEEEEESSC
T ss_pred HHHHHcCCCCCCEEEEEcCCCeEEEEEEEEEcCCccCCEEEEecCC
Confidence 5567899999999999998765555 4455567778889999875
No 40
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=26.29 E-value=47 Score=29.55 Aligned_cols=44 Identities=14% Similarity=0.003 Sum_probs=34.7
Q ss_pred hhhhhcCCCCCCEEEEEEcCCCCeEEEEEEeecCCCceeeecch
Q 041585 105 DFVRRRELAAGDEIGMCWDSFYSRFNFSILKRAPAPTIIVQDHA 148 (155)
Q Consensus 105 ~fVr~~~Lk~GD~I~f~wd~~~~~l~F~vl~r~~~~~~~~~~~~ 148 (155)
+-.++++|+.||.|.++-+...-++.-.|-.+-.+.++.+|+|.
T Consensus 632 ~dA~~lGI~~Gd~V~v~s~~G~~~~~a~vt~~i~pg~V~~~~g~ 675 (727)
T 2e7z_A 632 KTAQSLGLPSGEWIWVETTHGRLKLLLKHDGAQPEGTIRIPHGR 675 (727)
T ss_dssp HHHHHHTCCTTSEEEEECSSCEEEEEEEECTTSCTTEEEECSSC
T ss_pred HHHHHcCCCCCCEEEEEcCCceEEEEEEECCCcCCCEEEEecCc
Confidence 67789999999999999886655555555567778889998874
No 41
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=24.95 E-value=21 Score=25.46 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=16.6
Q ss_pred ceEEcCCchHhhhhhcCCC
Q 041585 95 SYVLINHWTADFVRRRELA 113 (155)
Q Consensus 95 syvL~~GW~~~fVr~~~Lk 113 (155)
.+.+..||...|-++++|+
T Consensus 126 ~f~~S~GWL~~Fk~Rh~i~ 144 (144)
T 1iuf_A 126 VPNFSNGWLEGFRKRHILH 144 (144)
T ss_dssp CCSCCSHHHHHHHHHTSCC
T ss_pred CCCcCHHHHHHHHHHcCCC
Confidence 5788899999999999885
No 42
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=24.36 E-value=1.1e+02 Score=19.63 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=12.5
Q ss_pred hhhhcCCCCCCEEEEE
Q 041585 106 FVRRRELAAGDEIGMC 121 (155)
Q Consensus 106 fVr~~~Lk~GD~I~f~ 121 (155)
-..+.+|++||.|.=.
T Consensus 38 pA~~aGl~~GD~I~~i 53 (106)
T 3ngh_A 38 PAEKAGLLDGDRVLRI 53 (106)
T ss_dssp HHHHTTCCTTCEEEEE
T ss_pred HHHHcCCCCCCEEEEE
Confidence 4567889999999753
No 43
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=24.18 E-value=37 Score=21.43 Aligned_cols=15 Identities=27% Similarity=0.197 Sum_probs=11.9
Q ss_pred hhhcCCCCCCEEEEE
Q 041585 107 VRRRELAAGDEIGMC 121 (155)
Q Consensus 107 Vr~~~Lk~GD~I~f~ 121 (155)
..+.+|++||.|.-.
T Consensus 41 A~~aGl~~GD~I~~i 55 (90)
T 2eaq_A 41 AEFSQLQVDDEIIAI 55 (90)
T ss_dssp HHHTTCCTTCEEEEE
T ss_pred HHHcCCCCCCEEEEE
Confidence 456789999999754
No 44
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=23.76 E-value=38 Score=21.26 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=12.4
Q ss_pred hhhhcCCCCCCEEEEE
Q 041585 106 FVRRRELAAGDEIGMC 121 (155)
Q Consensus 106 fVr~~~Lk~GD~I~f~ 121 (155)
-..+.+|++||.|.=.
T Consensus 38 pA~~aGL~~GD~I~~i 53 (87)
T 2pa1_A 38 KAKDADLRPGDIIVAI 53 (87)
T ss_dssp HHHHTTCCTTCEEEEE
T ss_pred hHHHcCCCCCCEEEEE
Confidence 3467789999999754
No 45
>2jmz_A Hypothetical protein MJ0781; unknown function; NMR {Methanocaldococcus jannaschii} PDB: 2jnq_A
Probab=23.71 E-value=42 Score=24.82 Aligned_cols=26 Identities=15% Similarity=0.013 Sum_probs=17.8
Q ss_pred eEEcCCchHhhhhhcCCCCCCEEEEEE
Q 041585 96 YVLINHWTADFVRRRELAAGDEIGMCW 122 (155)
Q Consensus 96 yvL~~GW~~~fVr~~~Lk~GD~I~f~w 122 (155)
|+..+|-. ..++...|++||.|.+..
T Consensus 106 ~v~~~g~~-~w~~A~eLk~GD~v~~~~ 131 (186)
T 2jmz_A 106 YISKTGEV-LEINAEMVKVGDYIYIPK 131 (186)
T ss_dssp EEEETTEE-EEEEGGGCCTTSEEEEEC
T ss_pred EEeCCCeE-EEEEhhcCCCCCEEEecc
Confidence 55555511 123899999999998764
No 46
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=23.59 E-value=31 Score=25.12 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=17.1
Q ss_pred ceEEcCCchHhhhhhcCCCCCCEEEE
Q 041585 95 SYVLINHWTADFVRRRELAAGDEIGM 120 (155)
Q Consensus 95 syvL~~GW~~~fVr~~~Lk~GD~I~f 120 (155)
.|||+- ..-.+.+.++++||.|.+
T Consensus 117 ~~VLEl--~aG~~~~~gi~~Gd~v~~ 140 (140)
T 3m7a_A 117 LAVLEI--NGGLAARLGIKPGDKVEW 140 (140)
T ss_dssp SEEEEE--ETTHHHHHTCCTTCEEEC
T ss_pred cEEEEe--CcChHHHcCCCCCCEEeC
Confidence 588653 223448999999999863
No 47
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=23.07 E-value=40 Score=21.36 Aligned_cols=14 Identities=29% Similarity=0.309 Sum_probs=11.5
Q ss_pred hhhcCCCCCCEEEE
Q 041585 107 VRRRELAAGDEIGM 120 (155)
Q Consensus 107 Vr~~~Lk~GD~I~f 120 (155)
+.+.+|++||+|.=
T Consensus 40 A~~aGl~~GD~I~~ 53 (91)
T 2pkt_A 40 AALANLCIGDVITA 53 (91)
T ss_dssp HHHTTCCTTCEEEE
T ss_pred HHHcCCCCCCEEEE
Confidence 46678999999974
No 48
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=23.05 E-value=1.9e+02 Score=19.84 Aligned_cols=48 Identities=10% Similarity=0.004 Sum_probs=32.7
Q ss_pred CCeEEEEEECCCCcEEEEEEEEeC-CCCceEEcCCchHhhhhhcCCCCCCEEEEE
Q 041585 68 EGLRVSVWDCDTNSMHRLVFKKWA-TSNSYVLINHWTADFVRRRELAAGDEIGMC 121 (155)
Q Consensus 68 ~gi~V~v~D~dt~~~w~~~~k~w~-~~~syvL~~GW~~~fVr~~~Lk~GD~I~f~ 121 (155)
++-.|.|+|.+.|..++-.--.-. .++.-.|+| - -.|..++||.|.+.
T Consensus 16 ~~E~V~IvNvnNG~Rf~TYvI~GerGSG~I~lNG--A----AArl~~~GD~vII~ 64 (96)
T 1vc3_B 16 PFEQVDIYDITNGARLTTYALPGERGSGVIGING--A----AAHLVKPGDLVILV 64 (96)
T ss_dssp TTCEEEEEETTTCCEEEEECEEECTTTTCEEEEG--G----GGGTCCTTCEEEEE
T ss_pred CCCEEEEEECCCCceEEEEEEEccCCCCeEEEch--H----HHccCCCCCEEEEE
Confidence 456789999988876654333332 245577876 2 56788999988864
No 49
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium meliloti}
Probab=22.80 E-value=42 Score=24.20 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=17.4
Q ss_pred ceEEc--CCchHhhhhhcCCCCCCEEEE
Q 041585 95 SYVLI--NHWTADFVRRRELAAGDEIGM 120 (155)
Q Consensus 95 syvL~--~GW~~~fVr~~~Lk~GD~I~f 120 (155)
.|||+ .||. .+.++++||.|.+
T Consensus 103 ~~VLEl~aG~~----~~~gi~~Gd~v~~ 126 (136)
T 3pjy_A 103 AYVLELNAGTV----KRLGVSPGDRLEG 126 (136)
T ss_dssp EEEEEEETTHH----HHHTCCTTCEEEE
T ss_pred eEEEEeCcChH----HhcCCCCCCEEEE
Confidence 48865 5555 8999999999975
No 50
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=22.10 E-value=42 Score=23.57 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=15.6
Q ss_pred hhcCCCCCCEEEEEEcCCCCeEEEEEEe
Q 041585 108 RRRELAAGDEIGMCWDSFYSRFNFSILK 135 (155)
Q Consensus 108 r~~~Lk~GD~I~f~wd~~~~~l~F~vl~ 135 (155)
+.+.++.||.|.|.- .+...|..
T Consensus 31 ~~~~i~vGD~I~f~~-----~l~~~V~~ 53 (113)
T 1xne_A 31 QLKDIKRGDKIIFND-----LIPAEVVE 53 (113)
T ss_dssp TTTTCCTTCEEEETT-----TEEEEEEE
T ss_pred hhhccCCCCEEEEcc-----ceEEEEEE
Confidence 345789999999932 55555544
No 51
>1t2w_A Sortase; transpeptidase, beta barrel, hydrolase; 1.80A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1t2o_A 1ija_A 2kid_A* 1t2p_A
Probab=22.07 E-value=94 Score=21.96 Aligned_cols=41 Identities=7% Similarity=0.088 Sum_probs=28.9
Q ss_pred CceEEcCCc-----hHhhhhhcCCCCCCEEEEEEcCCCCeEEEEEEee
Q 041585 94 NSYVLINHW-----TADFVRRRELAAGDEIGMCWDSFYSRFNFSILKR 136 (155)
Q Consensus 94 ~syvL~~GW-----~~~fVr~~~Lk~GD~I~f~wd~~~~~l~F~vl~r 136 (155)
++++|.|+= -.-|-+-..|+.||.|.+... ...+.|.|-+.
T Consensus 52 gn~viaGH~~~~~~~~~F~~L~~l~~Gd~i~v~~~--~~~~~Y~V~~~ 97 (145)
T 1t2w_A 52 QNISIAGHTFIDRPNYQFTNLKAAKKGSMVYFKVG--NETRKYKMTSI 97 (145)
T ss_dssp SEEEEEEECCTTSTTSTTTTGGGCCTTCEEEEEET--TEEEEEEEEEE
T ss_pred ceEEEEEecCCCCCCcccCChhhCCCCCEEEEEEC--CEEEEEEEEEE
Confidence 456665432 125777788999999999874 36888888664
No 52
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=21.57 E-value=44 Score=21.01 Aligned_cols=16 Identities=19% Similarity=0.082 Sum_probs=12.1
Q ss_pred hhhhcCCCCCCEEEEE
Q 041585 106 FVRRRELAAGDEIGMC 121 (155)
Q Consensus 106 fVr~~~Lk~GD~I~f~ 121 (155)
-..+.+|++||.|.=.
T Consensus 39 pA~~aGl~~GD~I~~i 54 (89)
T 2q3g_A 39 KAAQAGVAVGDWVLSI 54 (89)
T ss_dssp HHHHTTCCTTCEEEEE
T ss_pred HHHHcCCCCCCEEEEE
Confidence 3456789999999743
No 53
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=21.31 E-value=44 Score=21.75 Aligned_cols=15 Identities=20% Similarity=0.417 Sum_probs=11.8
Q ss_pred hhhhcCCCCCCEEEE
Q 041585 106 FVRRRELAAGDEIGM 120 (155)
Q Consensus 106 fVr~~~Lk~GD~I~f 120 (155)
-..+.+|++||+|.=
T Consensus 14 pA~~aGl~~GD~I~~ 28 (95)
T 3id1_A 14 IAAEAQIAPGTELKA 28 (95)
T ss_dssp HHHHTTCCTTCEEEE
T ss_pred HHHHcCCCCCCEEEE
Confidence 346779999999973
No 54
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens}
Probab=21.12 E-value=95 Score=23.44 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=18.9
Q ss_pred CCCCCCEEEEEEcCCC--------CeEEEEE
Q 041585 111 ELAAGDEIGMCWDSFY--------SRFNFSI 133 (155)
Q Consensus 111 ~Lk~GD~I~f~wd~~~--------~~l~F~v 133 (155)
..++||+||++-|..+ +.+.|..
T Consensus 111 ~~~~GDvIGc~ld~~~~~~~~~~~g~i~Ft~ 141 (213)
T 3toj_A 111 GYGQGDVLGFYINLPEDTISGRGSSEIIFYK 141 (213)
T ss_dssp CCCTTCEEEEEEEECCC-----CCCEEEEEE
T ss_pred CCCCCCEEEEEEEcCCCccccCCccEEEEEe
Confidence 4689999999998776 5788875
No 55
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=21.11 E-value=46 Score=20.83 Aligned_cols=16 Identities=13% Similarity=0.086 Sum_probs=12.2
Q ss_pred hhhhcCCCCCCEEEEE
Q 041585 106 FVRRRELAAGDEIGMC 121 (155)
Q Consensus 106 fVr~~~Lk~GD~I~f~ 121 (155)
-..+.+|++||.|.=.
T Consensus 39 pA~~aGl~~GD~I~~i 54 (88)
T 2uzc_A 39 KAAQANVRIGDVVLSI 54 (88)
T ss_dssp HHHHTTCCTTCEEEEE
T ss_pred hHHHcCCCCCCEEEEE
Confidence 3456789999999853
No 56
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=21.03 E-value=43 Score=22.11 Aligned_cols=15 Identities=20% Similarity=0.160 Sum_probs=12.1
Q ss_pred hhhhcCCCCCCEEEE
Q 041585 106 FVRRRELAAGDEIGM 120 (155)
Q Consensus 106 fVr~~~Lk~GD~I~f 120 (155)
...+.+|++||+|.=
T Consensus 49 ~A~~aGl~~GDvI~~ 63 (105)
T 2i4s_A 49 LFESIGLQDGDMAVA 63 (105)
T ss_dssp HHHHHTCCTTCEEEE
T ss_pred HHHHcCCCCCCEEEE
Confidence 456679999999983
No 57
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=20.89 E-value=42 Score=21.34 Aligned_cols=15 Identities=20% Similarity=0.036 Sum_probs=11.7
Q ss_pred hhhhcCCCCCCEEEE
Q 041585 106 FVRRRELAAGDEIGM 120 (155)
Q Consensus 106 fVr~~~Lk~GD~I~f 120 (155)
-..+.+|++||.|.=
T Consensus 36 pA~~aGl~~GD~I~~ 50 (91)
T 2f5y_A 36 PAERAGLQQLDTVLQ 50 (91)
T ss_dssp HHHHHTCCTTCEEEE
T ss_pred HHHHcCCCCCCEEEE
Confidence 345678999999974
No 58
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=20.87 E-value=45 Score=22.30 Aligned_cols=15 Identities=20% Similarity=0.335 Sum_probs=12.1
Q ss_pred hcCCCCCCEEEEE-Ec
Q 041585 109 RRELAAGDEIGMC-WD 123 (155)
Q Consensus 109 ~~~Lk~GD~I~f~-wd 123 (155)
++++++||.|.|. |+
T Consensus 35 Dr~~~vGD~l~l~E~~ 50 (83)
T 3iuw_A 35 DRNFQVGDILILEEYM 50 (83)
T ss_dssp CSCCCTTCEEEEEEEE
T ss_pred ccCCCCCCEEEEEEcc
Confidence 3669999999995 54
No 59
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=20.70 E-value=47 Score=21.03 Aligned_cols=16 Identities=19% Similarity=-0.089 Sum_probs=12.5
Q ss_pred hhhhcCCCCCCEEEEE
Q 041585 106 FVRRRELAAGDEIGMC 121 (155)
Q Consensus 106 fVr~~~Lk~GD~I~f~ 121 (155)
-..+.+|++||.|.=.
T Consensus 39 pA~~aGl~~GD~I~~i 54 (91)
T 2vsp_A 39 PADLAGLEDEDVIIEV 54 (91)
T ss_dssp HHHHTTCCTTCEEEEE
T ss_pred hHHHcCCCCCCEEEEE
Confidence 4567789999999743
No 60
>2d9r_A Conserved hypothetical protein; MCSG, structural genomics, hypothe protein, PSI, protein structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: b.129.2.1
Probab=20.53 E-value=1.4e+02 Score=20.41 Aligned_cols=87 Identities=11% Similarity=-0.035 Sum_probs=49.0
Q ss_pred eeeecCCC--CeEEEEEeecCCCCCCCCEEeehHHHHHcCCCCCCccccccccCCCCCeEEEEEECCCCcEEEEEEEEeC
Q 041585 14 TKLDLFTY--PWSITKILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLVFKKWA 91 (155)
Q Consensus 14 ~~l~l~~~--pw~fkK~LT~SDV~~~~RLvLPk~~~e~~ilP~l~~~~~~~~~~~~~gi~V~v~D~dt~~~w~~~~k~w~ 91 (155)
.++....+ .+.|+-+|-...-....-+.||.+..+. +. . .-+.|.+.= + |..|+-.+-.-.
T Consensus 11 ~~~~~~m~~~~~~F~a~l~~~~~~gg~fV~vP~~i~e~--~G-~------------G~v~V~~tI-~-g~~~~tsL~p~g 73 (104)
T 2d9r_A 11 PSSVGNGSDSPIEFDAIIRQVPDMDAAYVEIPFDVKTV--YG-K------------GRVRVNATF-D-GYPYTGYIVRMG 73 (104)
T ss_dssp ---------CCEEEEEECEECTTCSCEEEECCSCHHHH--HC-S------------SCEEEEEEE-T-TEEEEEEEEESS
T ss_pred hhhhhcCCcEEEEEEEEEEEecCCCCeEEEeChHHHHh--cC-C------------CceEEEEEE-C-CEEEEEEEEECC
Confidence 34444433 4889999987543212567888744343 23 1 114555431 2 455665444322
Q ss_pred CCCceEEcCCchHhhhhhcCCCCCCEEEE
Q 041585 92 TSNSYVLINHWTADFVRRRELAAGDEIGM 120 (155)
Q Consensus 92 ~~~syvL~~GW~~~fVr~~~Lk~GD~I~f 120 (155)
++.|+|- =.+++-+.-++.+||.|.+
T Consensus 74 -~G~~~Lp--vk~~vRka~g~~~GD~V~V 99 (104)
T 2d9r_A 74 -LPCHILG--LRQDIRRAIGKQPGDSVYV 99 (104)
T ss_dssp -TTCEEEE--ECHHHHHHHTCCTTSEEEE
T ss_pred -CCcEEEE--ecHHHHHHcCCCCCCEEEE
Confidence 3688884 3668999999999999875
No 61
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=20.22 E-value=47 Score=20.59 Aligned_cols=15 Identities=33% Similarity=0.257 Sum_probs=11.5
Q ss_pred hhhcCCCCCCEEEEE
Q 041585 107 VRRRELAAGDEIGMC 121 (155)
Q Consensus 107 Vr~~~Lk~GD~I~f~ 121 (155)
..+.+|++||.|.=.
T Consensus 36 A~~aGl~~GD~I~~i 50 (83)
T 2kv8_A 36 ADFVGLRAGDQILAV 50 (83)
T ss_dssp TTTTTCCTTCEEEEE
T ss_pred HHHcCCCCCCEEEEE
Confidence 455689999999743
No 62
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=20.21 E-value=44 Score=21.06 Aligned_cols=16 Identities=13% Similarity=-0.184 Sum_probs=12.2
Q ss_pred hhhhcCCCCCCEEEEE
Q 041585 106 FVRRRELAAGDEIGMC 121 (155)
Q Consensus 106 fVr~~~Lk~GD~I~f~ 121 (155)
-..+.+|++||.|.-.
T Consensus 44 pA~~aGl~~GD~I~~v 59 (91)
T 1m5z_A 44 PGDLGGLKPYDRLLQV 59 (91)
T ss_dssp HHHHHTCCTTCEEEEE
T ss_pred HHHHcCCCCCCEEEEE
Confidence 4456789999999754
No 63
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=20.14 E-value=81 Score=20.82 Aligned_cols=22 Identities=14% Similarity=0.108 Sum_probs=18.6
Q ss_pred hhhhhcCCCCCCEEEEEEcCCC
Q 041585 105 DFVRRRELAAGDEIGMCWDSFY 126 (155)
Q Consensus 105 ~fVr~~~Lk~GD~I~f~wd~~~ 126 (155)
-++|..|++.||+|-+-+...+
T Consensus 42 Pvar~~G~k~GdVvkI~R~S~t 63 (78)
T 1hmj_A 42 PVIQEIGAKEGDVVRVIRKSPT 63 (78)
T ss_pred HhhHHhCCCCCCEEEEEECCCC
Confidence 6788889999999999887554
Done!