Query 041588
Match_columns 540
No_of_seqs 309 out of 2424
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 08:43:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041588.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041588hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1237 H+/oligopeptide sympor 100.0 1.2E-64 2.7E-69 546.1 35.5 495 23-540 17-566 (571)
2 COG3104 PTR2 Dipeptide/tripept 100.0 1.2E-46 2.6E-51 387.8 30.5 428 34-536 15-489 (498)
3 PRK15462 dipeptide/tripeptide 100.0 8.2E-39 1.8E-43 340.8 39.5 428 38-540 7-485 (493)
4 TIGR00926 2A1704 Peptide:H+ sy 100.0 9.8E-38 2.1E-42 343.0 39.4 306 54-428 1-313 (654)
5 PRK10207 dipeptide/tripeptide 100.0 6.5E-37 1.4E-41 329.9 41.6 426 35-538 9-480 (489)
6 TIGR00924 yjdL_sub1_fam amino 100.0 5.2E-37 1.1E-41 330.1 40.3 419 36-537 6-471 (475)
7 PRK09584 tppB putative tripept 100.0 1.4E-34 3.1E-39 313.1 39.6 425 36-536 17-481 (500)
8 PF00854 PTR2: POT family; In 100.0 3.7E-29 8.1E-34 261.2 12.8 329 122-477 1-369 (372)
9 PRK10054 putative transporter; 99.9 6E-19 1.3E-23 185.8 31.1 176 38-257 5-180 (395)
10 PRK03545 putative arabinose tr 99.9 1.8E-18 3.8E-23 181.7 33.6 174 39-256 8-181 (390)
11 PRK11646 multidrug resistance 99.8 9.2E-19 2E-23 184.7 31.1 171 43-257 13-183 (400)
12 PRK05122 major facilitator sup 99.8 2E-17 4.4E-22 173.9 36.6 174 40-248 15-188 (399)
13 PRK12382 putative transporter; 99.8 1.4E-17 3.1E-22 174.7 34.9 172 40-246 15-186 (392)
14 PRK11551 putative 3-hydroxyphe 99.8 2E-17 4.4E-22 174.2 35.5 177 37-257 12-188 (406)
15 TIGR00893 2A0114 d-galactonate 99.8 6.3E-18 1.4E-22 175.3 29.9 155 63-260 16-170 (399)
16 PRK09874 drug efflux system pr 99.8 2.5E-17 5.4E-22 173.3 34.4 173 40-257 14-191 (408)
17 TIGR00900 2A0121 H+ Antiporter 99.8 3.9E-17 8.5E-22 168.2 29.5 175 44-257 3-177 (365)
18 PRK10504 putative transporter; 99.8 1.5E-16 3.2E-21 171.2 34.8 178 40-261 10-187 (471)
19 PRK11663 regulatory protein Uh 99.8 5.9E-17 1.3E-21 172.7 31.3 167 43-253 26-192 (434)
20 TIGR02332 HpaX 4-hydroxyphenyl 99.8 8.7E-17 1.9E-21 170.3 31.3 179 38-260 6-190 (412)
21 TIGR00891 2A0112 putative sial 99.8 1.2E-16 2.5E-21 167.4 31.8 175 34-252 6-182 (405)
22 PRK10489 enterobactin exporter 99.8 5.1E-17 1.1E-21 172.1 28.4 175 42-255 19-193 (417)
23 PRK10213 nepI ribonucleoside t 99.8 3.9E-16 8.4E-21 164.4 34.7 175 35-253 15-189 (394)
24 cd06174 MFS The Major Facilita 99.8 1.7E-16 3.8E-21 162.0 30.4 171 43-257 2-172 (352)
25 PF07690 MFS_1: Major Facilita 99.8 1.4E-17 2.9E-22 170.9 22.1 170 46-258 2-171 (352)
26 PRK15402 multidrug efflux syst 99.8 5.7E-16 1.2E-20 163.4 34.6 174 40-257 10-186 (406)
27 TIGR00903 2A0129 major facilit 99.8 3.4E-16 7.4E-21 163.2 32.0 162 52-258 3-164 (368)
28 KOG2532 Permease of the major 99.8 1.4E-17 3.1E-22 177.1 22.0 351 70-534 67-447 (466)
29 TIGR00899 2A0120 sugar efflux 99.8 2.9E-16 6.2E-21 163.1 31.1 172 46-260 3-177 (375)
30 PRK15011 sugar efflux transpor 99.8 1.1E-15 2.3E-20 160.8 35.4 180 39-260 14-195 (393)
31 TIGR00895 2A0115 benzoate tran 99.8 3.2E-16 7E-21 163.3 31.0 175 39-257 16-190 (398)
32 PRK03633 putative MFS family t 99.8 4.7E-16 1E-20 162.8 32.1 155 40-238 6-160 (381)
33 PRK11273 glpT sn-glycerol-3-ph 99.8 6.3E-16 1.4E-20 165.7 33.4 173 43-255 28-204 (452)
34 PRK10091 MFS transport protein 99.8 5.6E-16 1.2E-20 162.3 32.0 174 40-257 3-176 (382)
35 TIGR00710 efflux_Bcr_CflA drug 99.8 6.2E-16 1.3E-20 161.1 31.5 176 40-259 5-180 (385)
36 TIGR00890 2A0111 Oxalate/Forma 99.8 1.9E-16 4.1E-21 163.7 27.4 157 56-257 19-175 (377)
37 COG2814 AraJ Arabinose efflux 99.8 1.8E-15 3.8E-20 155.5 33.6 181 36-260 9-189 (394)
38 TIGR00894 2A0114euk Na(+)-depe 99.8 3.3E-16 7.1E-21 168.4 29.8 147 70-257 70-217 (465)
39 PRK09528 lacY galactoside perm 99.8 6.6E-16 1.4E-20 163.8 31.5 182 40-259 10-191 (420)
40 PRK12307 putative sialic acid 99.8 6.5E-16 1.4E-20 163.8 31.2 165 38-246 16-180 (426)
41 PRK09556 uhpT sugar phosphate 99.8 1.7E-16 3.8E-21 170.7 26.8 176 42-255 27-208 (467)
42 PRK09705 cynX putative cyanate 99.8 1.3E-15 2.8E-20 160.3 32.7 162 45-251 14-176 (393)
43 PRK10406 alpha-ketoglutarate t 99.8 2.5E-15 5.4E-20 160.1 35.0 168 47-250 29-210 (432)
44 TIGR00902 2A0127 phenyl propri 99.8 2.8E-15 6.2E-20 157.0 33.9 344 41-529 5-374 (382)
45 TIGR00897 2A0118 polyol permea 99.8 6.2E-15 1.3E-19 155.5 36.6 174 38-251 11-185 (402)
46 PRK14995 methyl viologen resis 99.8 8.8E-16 1.9E-20 166.5 30.7 180 39-261 5-184 (495)
47 PRK03699 putative transporter; 99.7 5.8E-15 1.3E-19 155.3 34.6 174 37-254 4-178 (394)
48 TIGR00711 efflux_EmrB drug res 99.7 1.3E-15 2.7E-20 164.2 30.1 175 42-260 4-178 (485)
49 PRK11195 lysophospholipid tran 99.7 5.9E-15 1.3E-19 155.3 34.2 165 40-252 3-167 (393)
50 TIGR01299 synapt_SV2 synaptic 99.7 3.2E-15 6.9E-20 167.3 33.8 155 60-257 186-353 (742)
51 COG2271 UhpC Sugar phosphate p 99.7 2.1E-16 4.6E-21 160.6 21.6 172 43-257 28-204 (448)
52 PRK11652 emrD multidrug resist 99.7 8.1E-15 1.8E-19 153.9 34.6 172 39-254 7-178 (394)
53 TIGR00881 2A0104 phosphoglycer 99.7 7.6E-16 1.6E-20 159.3 25.7 152 64-258 18-170 (379)
54 TIGR00879 SP MFS transporter, 99.7 1.8E-15 3.9E-20 161.4 28.9 145 73-257 68-215 (481)
55 PRK11102 bicyclomycin/multidru 99.7 2.6E-15 5.7E-20 156.3 29.2 157 58-258 9-165 (377)
56 KOG1330 Sugar transporter/spin 99.7 1.6E-17 3.5E-22 170.2 12.1 180 37-260 30-210 (493)
57 PLN00028 nitrate transmembrane 99.7 6.2E-15 1.3E-19 159.1 32.7 174 39-257 35-217 (476)
58 PRK03893 putative sialic acid 99.7 5.4E-15 1.2E-19 160.1 31.8 167 37-247 17-183 (496)
59 TIGR00892 2A0113 monocarboxyla 99.7 2.5E-15 5.4E-20 161.2 28.8 150 66-259 44-194 (455)
60 PRK09952 shikimate transporter 99.7 2.2E-14 4.9E-19 153.1 34.9 175 38-248 20-209 (438)
61 PRK15403 multidrug efflux syst 99.7 1.6E-14 3.5E-19 153.1 32.8 148 67-257 42-189 (413)
62 PRK10077 xylE D-xylose transpo 99.7 1.7E-14 3.6E-19 155.4 31.8 155 71-256 50-212 (479)
63 TIGR00712 glpT glycerol-3-phos 99.7 1E-14 2.2E-19 155.6 29.7 157 64-260 50-207 (438)
64 PRK11043 putative transporter; 99.7 6.6E-14 1.4E-18 147.4 35.0 170 45-257 8-179 (401)
65 PRK10473 multidrug efflux syst 99.7 7.2E-14 1.6E-18 146.6 33.9 171 44-258 7-177 (392)
66 TIGR00882 2A0105 oligosacchari 99.7 4.7E-14 1E-18 148.4 32.4 180 40-257 2-181 (396)
67 PRK11128 putative 3-phenylprop 99.7 5.5E-14 1.2E-18 147.3 32.2 156 49-252 13-172 (382)
68 TIGR00898 2A0119 cation transp 99.7 2.1E-14 4.5E-19 156.0 29.5 147 66-258 114-263 (505)
69 PRK15075 citrate-proton sympor 99.7 1.2E-13 2.7E-18 147.2 34.2 172 39-246 14-199 (434)
70 PRK08633 2-acyl-glycerophospho 99.7 6.9E-14 1.5E-18 166.6 35.2 155 40-234 9-165 (1146)
71 PRK11010 ampG muropeptide tran 99.7 2.4E-13 5.1E-18 147.3 36.1 179 36-256 8-192 (491)
72 PRK10642 proline/glycine betai 99.7 2.6E-13 5.6E-18 147.0 36.1 174 40-249 16-203 (490)
73 PRK06814 acylglycerophosphoeth 99.7 4.7E-14 1E-18 168.0 31.2 136 77-254 53-190 (1140)
74 PRK10133 L-fucose transporter; 99.6 2.2E-13 4.8E-18 145.4 32.1 152 40-232 26-177 (438)
75 PRK15034 nitrate/nitrite trans 99.6 1.4E-13 3.1E-18 146.0 30.1 180 40-258 34-231 (462)
76 TIGR00792 gph sugar (Glycoside 99.6 1.4E-13 3.1E-18 146.3 28.8 175 48-257 7-192 (437)
77 TIGR00886 2A0108 nitrite extru 99.6 4.8E-14 1E-18 146.0 23.6 160 41-243 2-171 (366)
78 TIGR00887 2A0109 phosphate:H+ 99.6 5.3E-13 1.1E-17 145.1 32.2 181 40-257 16-223 (502)
79 PF05977 MFS_3: Transmembrane 99.6 1.1E-12 2.3E-17 142.2 34.2 182 40-260 10-191 (524)
80 TIGR00883 2A0106 metabolite-pr 99.6 5.4E-13 1.2E-17 138.7 28.8 157 62-253 14-185 (394)
81 TIGR00889 2A0110 nucleoside tr 99.6 2E-12 4.3E-17 137.3 32.6 165 45-253 7-174 (418)
82 TIGR00885 fucP L-fucose:H+ sym 99.6 4.6E-12 1E-16 134.1 32.2 172 42-254 5-202 (410)
83 TIGR00896 CynX cyanate transpo 99.6 7.4E-13 1.6E-17 137.0 24.8 145 60-250 20-166 (355)
84 PRK11902 ampG muropeptide tran 99.6 2.6E-11 5.6E-16 127.9 36.0 166 47-254 6-177 (402)
85 TIGR00901 2A0125 AmpG-related 99.5 2.3E-12 5E-17 133.4 27.0 157 62-260 10-179 (356)
86 TIGR01301 GPH_sucrose GPH fami 99.5 1.2E-11 2.5E-16 132.2 32.7 197 41-262 5-221 (477)
87 COG2223 NarK Nitrate/nitrite t 99.5 4E-12 8.7E-17 129.8 27.5 182 37-261 11-195 (417)
88 PRK09952 shikimate transporter 99.5 7.8E-13 1.7E-17 141.3 19.0 183 37-258 247-432 (438)
89 TIGR00805 oat sodium-independe 99.5 9.9E-13 2.1E-17 146.3 20.3 200 37-258 29-280 (633)
90 COG2271 UhpC Sugar phosphate p 99.5 2.9E-13 6.3E-18 137.9 13.9 179 40-258 252-433 (448)
91 PRK09669 putative symporter Ya 99.5 2.7E-11 5.8E-16 129.6 29.7 178 43-255 12-200 (444)
92 KOG2615 Permease of the major 99.5 5.8E-12 1.2E-16 126.4 21.9 117 73-233 65-181 (451)
93 PRK15011 sugar efflux transpor 99.5 4E-12 8.7E-17 133.7 21.2 176 39-258 215-390 (393)
94 TIGR00788 fbt folate/biopterin 99.5 6.2E-11 1.3E-15 127.7 30.2 179 43-258 29-208 (468)
95 PRK10642 proline/glycine betai 99.5 3.2E-12 7E-17 138.5 20.4 180 38-258 248-429 (490)
96 PRK09556 uhpT sugar phosphate 99.5 2.5E-12 5.4E-17 138.5 18.6 177 40-257 258-447 (467)
97 PRK09848 glucuronide transport 99.4 1.3E-10 2.7E-15 124.5 31.0 157 43-230 11-173 (448)
98 TIGR02718 sider_RhtX_FptX side 99.4 5.3E-10 1.2E-14 117.3 34.2 178 42-259 3-184 (390)
99 KOG3764 Vesicular amine transp 99.4 3.4E-12 7.3E-17 128.8 16.2 152 70-263 100-251 (464)
100 TIGR00890 2A0111 Oxalate/Forma 99.4 6E-12 1.3E-16 130.0 17.8 171 40-252 205-375 (377)
101 PRK10429 melibiose:sodium symp 99.4 1.6E-10 3.5E-15 124.7 29.0 176 43-254 9-196 (473)
102 TIGR00806 rfc RFC reduced fola 99.4 1.1E-11 2.5E-16 129.8 18.3 153 61-258 46-202 (511)
103 TIGR00883 2A0106 metabolite-pr 99.4 4E-12 8.8E-17 132.1 15.0 173 36-248 215-390 (394)
104 PRK03699 putative transporter; 99.4 1.4E-11 3.1E-16 129.5 19.1 171 40-254 205-375 (394)
105 PRK09705 cynX putative cyanate 99.4 3.7E-11 8.1E-16 126.4 22.2 180 40-263 205-385 (393)
106 PRK05122 major facilitator sup 99.4 1.4E-11 3E-16 129.6 18.7 173 49-267 225-397 (399)
107 PF06609 TRI12: Fungal trichot 99.4 3.1E-10 6.7E-15 123.3 29.0 155 61-260 64-219 (599)
108 TIGR00899 2A0120 sugar efflux 99.4 2.5E-11 5.4E-16 126.0 19.7 173 42-258 201-373 (375)
109 PRK11273 glpT sn-glycerol-3-ph 99.4 1.3E-11 2.9E-16 132.3 17.8 180 40-258 253-434 (452)
110 PF13347 MFS_2: MFS/sugar tran 99.4 6.6E-11 1.4E-15 126.0 23.0 179 49-261 10-200 (428)
111 PRK11663 regulatory protein Uh 99.4 2.1E-11 4.6E-16 130.0 19.1 182 40-259 243-424 (434)
112 TIGR00893 2A0114 d-galactonate 99.4 2.6E-11 5.5E-16 125.7 19.0 180 40-256 215-396 (399)
113 PF03825 Nuc_H_symport: Nucleo 99.4 2.1E-09 4.6E-14 113.1 33.3 115 45-196 7-121 (400)
114 cd06174 MFS The Major Facilita 99.4 4.6E-11 1E-15 121.8 19.7 173 41-256 176-349 (352)
115 COG0738 FucP Fucose permease [ 99.3 1.3E-09 2.8E-14 110.9 29.1 134 60-233 32-165 (422)
116 KOG0569 Permease of the major 99.3 4.2E-10 9.1E-15 119.4 26.5 141 79-259 63-205 (485)
117 KOG2504 Monocarboxylate transp 99.3 1.4E-10 3E-15 125.3 23.2 175 43-261 45-223 (509)
118 KOG0254 Predicted transporter 99.3 4.3E-10 9.3E-15 122.7 27.5 134 77-254 90-225 (513)
119 TIGR00712 glpT glycerol-3-phos 99.3 5.2E-11 1.1E-15 127.2 17.5 180 40-260 251-434 (438)
120 PRK11551 putative 3-hydroxyphe 99.3 5.7E-11 1.2E-15 125.1 17.3 171 43-257 223-394 (406)
121 PRK09528 lacY galactoside perm 99.3 2.4E-11 5.2E-16 128.9 14.5 172 43-257 226-401 (420)
122 TIGR00891 2A0112 putative sial 99.3 4.9E-11 1.1E-15 124.8 16.7 159 43-243 241-400 (405)
123 PRK11462 putative transporter; 99.3 9E-09 2E-13 110.7 34.0 177 43-254 12-199 (460)
124 PRK09874 drug efflux system pr 99.3 8.1E-11 1.7E-15 123.8 17.7 171 45-258 224-397 (408)
125 TIGR01299 synapt_SV2 synaptic 99.3 8.5E-11 1.9E-15 131.9 18.6 136 82-262 601-736 (742)
126 TIGR00889 2A0110 nucleoside tr 99.3 6.4E-11 1.4E-15 125.8 16.7 180 41-260 209-403 (418)
127 PF01306 LacY_symp: LacY proto 99.3 1.3E-09 2.9E-14 113.4 26.0 181 40-260 7-189 (412)
128 KOG4686 Predicted sugar transp 99.3 7E-11 1.5E-15 114.0 14.6 168 36-248 260-431 (459)
129 PRK12382 putative transporter; 99.3 1.2E-10 2.7E-15 122.1 18.0 163 50-258 226-388 (392)
130 TIGR00897 2A0118 polyol permea 99.3 2.5E-10 5.5E-15 120.4 20.1 178 40-258 222-400 (402)
131 KOG2533 Permease of the major 99.3 4.3E-09 9.4E-14 112.9 29.6 149 69-260 74-228 (495)
132 PRK03545 putative arabinose tr 99.3 4.2E-10 9.2E-15 118.1 21.4 175 41-259 206-380 (390)
133 PRK10489 enterobactin exporter 99.3 1.5E-10 3.2E-15 122.7 17.9 163 56-261 239-401 (417)
134 PRK15075 citrate-proton sympor 99.3 1.3E-10 2.9E-15 123.9 17.4 153 46-238 244-398 (434)
135 PRK03633 putative MFS family t 99.3 3.2E-10 6.9E-15 118.7 19.7 160 49-255 209-368 (381)
136 COG2223 NarK Nitrate/nitrite t 99.3 9.5E-11 2.1E-15 119.8 15.0 183 40-259 218-401 (417)
137 KOG2532 Permease of the major 99.3 8.6E-11 1.9E-15 125.4 15.3 183 40-258 258-446 (466)
138 PRK03893 putative sialic acid 99.2 2.5E-10 5.4E-15 123.6 18.5 149 58-247 293-441 (496)
139 KOG0255 Synaptic vesicle trans 99.2 6.6E-09 1.4E-13 113.5 29.6 141 69-255 111-251 (521)
140 PRK11010 ampG muropeptide tran 99.2 4.4E-10 9.5E-15 121.9 20.1 180 42-260 224-404 (491)
141 TIGR00902 2A0127 phenyl propri 99.2 4.3E-10 9.3E-15 117.8 19.3 170 40-255 205-375 (382)
142 TIGR00881 2A0104 phosphoglycer 99.2 2.3E-10 5E-15 118.2 16.9 162 40-241 216-379 (379)
143 PRK10406 alpha-ketoglutarate t 99.2 4.8E-10 1E-14 119.5 19.7 177 41-258 243-423 (432)
144 TIGR00894 2A0114euk Na(+)-depe 99.2 2.9E-10 6.3E-15 122.3 18.2 185 39-257 260-448 (465)
145 TIGR00880 2_A_01_02 Multidrug 99.2 6.3E-11 1.4E-15 104.1 9.6 132 84-258 6-137 (141)
146 PF11700 ATG22: Vacuole efflux 99.2 1E-09 2.3E-14 117.8 20.6 187 38-259 279-468 (477)
147 TIGR02332 HpaX 4-hydroxyphenyl 99.2 4.1E-10 8.9E-15 119.3 17.2 165 40-247 242-409 (412)
148 TIGR00879 SP MFS transporter, 99.2 7.5E-10 1.6E-14 118.0 18.9 186 43-261 287-472 (481)
149 TIGR01272 gluP glucose/galacto 99.2 7.4E-10 1.6E-14 112.8 17.9 162 40-247 140-303 (310)
150 TIGR00892 2A0113 monocarboxyla 99.2 4E-10 8.7E-15 121.0 16.5 172 40-254 241-416 (455)
151 KOG4686 Predicted sugar transp 99.2 6.2E-11 1.3E-15 114.4 7.4 155 43-236 44-200 (459)
152 COG2814 AraJ Arabinose efflux 99.1 3.2E-09 6.9E-14 109.6 19.7 181 38-262 209-389 (394)
153 PTZ00207 hypothetical protein; 99.1 2.5E-09 5.4E-14 116.9 19.9 156 57-254 44-200 (591)
154 PF11700 ATG22: Vacuole efflux 99.1 3.7E-07 8.1E-12 98.2 35.7 76 444-533 392-467 (477)
155 PRK12307 putative sialic acid 99.1 3.7E-09 8E-14 112.1 19.1 145 54-242 245-391 (426)
156 PRK10091 MFS transport protein 99.1 4.7E-09 1E-13 109.9 19.4 174 41-258 200-375 (382)
157 PLN00028 nitrate transmembrane 99.1 1.8E-09 3.9E-14 116.6 16.7 174 41-259 253-433 (476)
158 TIGR00882 2A0105 oligosacchari 99.1 2.1E-09 4.5E-14 113.1 16.6 172 40-254 215-390 (396)
159 TIGR00900 2A0121 H+ Antiporter 99.1 3.3E-09 7.1E-14 109.1 17.0 155 40-236 210-365 (365)
160 PRK10504 putative transporter; 99.1 5.7E-09 1.2E-13 112.4 19.1 158 40-237 261-418 (471)
161 PRK15402 multidrug efflux syst 99.1 1.1E-08 2.4E-13 107.8 21.0 173 40-251 215-387 (406)
162 PRK15034 nitrate/nitrite trans 99.1 8.1E-09 1.7E-13 109.9 19.5 185 40-257 252-452 (462)
163 TIGR02718 sider_RhtX_FptX side 99.1 7.2E-09 1.6E-13 108.8 19.1 176 41-254 209-386 (390)
164 TIGR00896 CynX cyanate transpo 99.1 8.7E-09 1.9E-13 106.6 19.1 156 40-238 197-353 (355)
165 PRK11128 putative 3-phenylprop 99.1 7.7E-09 1.7E-13 108.3 18.8 168 40-253 205-373 (382)
166 TIGR00895 2A0115 benzoate tran 99.0 2.7E-09 5.9E-14 111.1 14.9 148 40-231 250-397 (398)
167 COG2807 CynX Cyanate permease 99.0 5.2E-07 1.1E-11 91.0 29.3 171 42-258 14-185 (395)
168 TIGR00792 gph sugar (Glycoside 99.0 6.9E-09 1.5E-13 110.3 16.7 162 40-238 222-384 (437)
169 TIGR00887 2A0109 phosphate:H+ 99.0 2.7E-09 6E-14 116.0 13.7 174 47-261 295-490 (502)
170 KOG0252 Inorganic phosphate tr 99.0 1.5E-08 3.2E-13 104.5 17.3 139 73-247 81-234 (538)
171 COG2270 Permeases of the major 99.0 1.1E-08 2.4E-13 104.8 16.2 177 40-259 252-429 (438)
172 PRK14995 methyl viologen resis 99.0 1.1E-08 2.5E-13 111.0 17.4 155 40-234 259-413 (495)
173 TIGR00711 efflux_EmrB drug res 99.0 9E-09 1.9E-13 110.9 16.5 156 40-234 255-410 (485)
174 PRK10077 xylE D-xylose transpo 99.0 4.6E-08 1E-12 105.4 21.1 166 56-261 287-459 (479)
175 TIGR00710 efflux_Bcr_CflA drug 99.0 3.4E-08 7.4E-13 102.7 19.0 164 40-242 206-369 (385)
176 PRK11902 ampG muropeptide tran 99.0 4.7E-08 1E-12 103.1 19.8 174 41-257 210-388 (402)
177 PRK10133 L-fucose transporter; 98.9 2.5E-08 5.5E-13 106.5 17.7 168 40-253 258-427 (438)
178 PF13347 MFS_2: MFS/sugar tran 98.9 2.8E-08 6E-13 105.8 17.9 164 40-239 225-389 (428)
179 COG2211 MelB Na+/melibiose sym 98.9 1.4E-06 3.1E-11 92.0 29.9 181 43-254 15-202 (467)
180 PRK10054 putative transporter; 98.9 1.7E-08 3.7E-13 106.3 15.7 174 40-256 206-381 (395)
181 PRK10213 nepI ribonucleoside t 98.9 9.2E-08 2E-12 100.8 20.8 167 40-251 216-383 (394)
182 PRK11646 multidrug resistance 98.9 3.1E-08 6.8E-13 104.5 17.1 155 57-254 225-383 (400)
183 TIGR00903 2A0129 major facilit 98.9 6.2E-08 1.3E-12 101.2 18.6 170 40-256 192-362 (368)
184 PRK08633 2-acyl-glycerophospho 98.9 3.5E-08 7.6E-13 117.9 18.9 165 40-247 232-398 (1146)
185 KOG2325 Predicted transporter/ 98.9 2.6E-07 5.7E-12 97.7 22.8 191 32-261 26-231 (488)
186 PF05977 MFS_3: Transmembrane 98.9 5.9E-08 1.3E-12 105.5 17.9 173 41-256 219-391 (524)
187 PRK09848 glucuronide transport 98.9 4.4E-08 9.6E-13 104.9 16.8 164 40-238 228-392 (448)
188 COG2807 CynX Cyanate permease 98.9 1.4E-07 3.1E-12 94.9 19.0 167 40-249 208-375 (395)
189 PRK06814 acylglycerophosphoeth 98.8 5.9E-08 1.3E-12 116.0 17.9 184 40-247 225-410 (1140)
190 PF07690 MFS_1: Major Facilita 98.8 1.5E-08 3.2E-13 103.8 9.5 143 43-225 209-352 (352)
191 PF03092 BT1: BT1 family; Int 98.8 4.8E-06 1E-10 88.8 27.8 164 63-261 12-177 (433)
192 PRK11195 lysophospholipid tran 98.8 5.4E-07 1.2E-11 94.9 19.7 163 53-259 218-380 (393)
193 KOG0569 Permease of the major 98.7 4.5E-07 9.8E-12 96.5 18.4 193 38-265 267-460 (485)
194 KOG0253 Synaptic vesicle trans 98.7 2.6E-07 5.7E-12 92.8 15.2 174 40-258 326-518 (528)
195 PRK11043 putative transporter; 98.7 8.4E-07 1.8E-11 93.4 20.2 159 43-241 206-364 (401)
196 KOG2504 Monocarboxylate transp 98.7 1.2E-07 2.5E-12 102.7 13.7 176 40-259 298-476 (509)
197 PRK11102 bicyclomycin/multidru 98.7 8.7E-07 1.9E-11 92.2 19.3 150 40-229 194-344 (377)
198 PRK10429 melibiose:sodium symp 98.7 2.7E-07 5.7E-12 99.7 15.8 166 40-238 231-397 (473)
199 TIGR00898 2A0119 cation transp 98.7 2E-07 4.4E-12 101.2 15.0 131 84-257 363-493 (505)
200 PRK09669 putative symporter Ya 98.7 5E-07 1.1E-11 96.7 17.4 163 40-238 229-392 (444)
201 TIGR00901 2A0125 AmpG-related 98.7 2.5E-07 5.4E-12 95.7 14.5 145 41-218 210-355 (356)
202 PF03209 PUCC: PUCC protein; 98.7 2E-05 4.3E-10 81.4 27.3 144 67-236 6-153 (403)
203 COG2270 Permeases of the major 98.7 2.1E-05 4.5E-10 81.2 26.5 127 60-225 35-168 (438)
204 TIGR00885 fucP L-fucose:H+ sym 98.7 7.2E-07 1.6E-11 94.5 16.7 164 41-250 233-403 (410)
205 TIGR00886 2A0108 nitrite extru 98.6 1.8E-07 3.8E-12 96.8 11.5 142 40-221 225-366 (366)
206 PRK10473 multidrug efflux syst 98.6 2.3E-06 5E-11 89.7 19.7 73 54-142 217-289 (392)
207 KOG0253 Synaptic vesicle trans 98.6 1.7E-05 3.6E-10 80.1 24.1 155 49-248 86-240 (528)
208 KOG2563 Permease of the major 98.6 1.4E-05 3.1E-10 82.9 23.0 135 62-234 66-202 (480)
209 PF05631 DUF791: Protein of un 98.6 3.8E-06 8.2E-11 85.3 17.8 152 69-260 62-217 (354)
210 PF03825 Nuc_H_symport: Nucleo 98.5 3.8E-06 8.1E-11 88.6 18.5 182 41-260 208-396 (400)
211 KOG2816 Predicted transporter 98.5 4.5E-06 9.8E-11 89.1 17.0 174 43-264 21-204 (463)
212 PRK11652 emrD multidrug resist 98.5 9.3E-06 2E-10 85.2 19.3 145 54-239 221-365 (394)
213 PF00083 Sugar_tr: Sugar (and 98.5 3E-09 6.4E-14 113.8 -7.8 139 77-255 47-188 (451)
214 PF01306 LacY_symp: LacY proto 98.4 3.5E-06 7.6E-11 88.0 13.9 177 39-258 219-399 (412)
215 COG2211 MelB Na+/melibiose sym 98.4 1.9E-05 4.1E-10 83.5 18.8 164 40-238 236-400 (467)
216 PRK11462 putative transporter; 98.3 2.8E-05 6E-10 83.7 18.7 162 40-238 228-391 (460)
217 TIGR00924 yjdL_sub1_fam amino 98.3 1.6E-05 3.4E-10 86.1 15.6 183 45-260 277-469 (475)
218 TIGR01272 gluP glucose/galacto 98.3 0.00012 2.7E-09 74.4 21.2 86 164-255 8-109 (310)
219 KOG3626 Organic anion transpor 98.3 1.4E-05 3.1E-10 88.2 14.9 202 40-263 96-347 (735)
220 PF03209 PUCC: PUCC protein; 98.2 4E-05 8.8E-10 79.1 16.8 172 45-255 213-394 (403)
221 PF06813 Nodulin-like: Nodulin 98.2 7E-05 1.5E-09 73.4 17.4 138 55-231 17-154 (250)
222 KOG2533 Permease of the major 98.2 4.9E-06 1.1E-10 89.5 10.1 164 40-244 273-441 (495)
223 COG0738 FucP Fucose permease [ 98.2 3.4E-05 7.5E-10 79.1 15.6 154 43-242 239-392 (422)
224 PRK15403 multidrug efflux syst 98.2 6E-05 1.3E-09 79.9 18.4 168 40-247 218-385 (413)
225 PF03137 OATP: Organic Anion T 98.2 3E-07 6.5E-12 100.4 -0.8 193 48-263 11-254 (539)
226 TIGR00926 2A1704 Peptide:H+ sy 98.1 0.00032 7E-09 78.3 20.3 289 71-431 15-313 (654)
227 TIGR01301 GPH_sucrose GPH fami 98.0 0.00012 2.6E-09 78.7 15.3 208 33-261 251-473 (477)
228 COG0477 ProP Permeases of the 98.0 0.00031 6.7E-09 68.8 16.9 153 54-247 16-173 (338)
229 PF00083 Sugar_tr: Sugar (and 98.0 5.5E-08 1.2E-12 104.0 -11.2 188 41-264 253-441 (451)
230 PRK10207 dipeptide/tripeptide 97.9 0.00014 3E-09 78.9 14.1 179 49-260 278-477 (489)
231 PF12832 MFS_1_like: MFS_1 lik 97.9 0.00012 2.5E-09 58.2 9.9 68 47-131 7-74 (77)
232 PRK09584 tppB putative tripept 97.9 0.00028 6E-09 76.9 15.3 179 48-260 280-480 (500)
233 TIGR00788 fbt folate/biopterin 97.8 5E-05 1.1E-09 82.0 8.5 148 68-248 280-432 (468)
234 KOG0252 Inorganic phosphate tr 97.7 3.9E-05 8.4E-10 79.7 4.2 181 40-259 304-498 (538)
235 KOG3098 Uncharacterized conser 97.6 0.036 7.7E-07 59.0 26.2 80 82-199 56-135 (461)
236 TIGR00805 oat sodium-independe 97.6 0.0012 2.6E-08 74.0 15.3 85 40-138 330-415 (633)
237 KOG3762 Predicted transporter 97.6 0.0073 1.6E-07 64.4 19.7 49 55-104 26-74 (618)
238 KOG3764 Vesicular amine transp 97.6 8E-05 1.7E-09 76.2 4.9 181 43-258 273-453 (464)
239 KOG0254 Predicted transporter 97.5 0.0025 5.3E-08 69.7 16.1 193 39-263 293-487 (513)
240 PTZ00207 hypothetical protein; 97.5 0.00097 2.1E-08 73.4 12.4 185 40-262 353-555 (591)
241 PF06963 FPN1: Ferroportin1 (F 97.4 0.08 1.7E-06 56.3 25.6 197 41-263 3-205 (432)
242 KOG3762 Predicted transporter 97.2 0.0013 2.9E-08 69.8 9.3 173 46-262 377-550 (618)
243 KOG2563 Permease of the major 97.0 0.0065 1.4E-07 63.5 11.8 185 40-265 266-456 (480)
244 PF05978 UNC-93: Ion channel r 97.0 0.024 5.3E-07 51.4 14.0 106 79-228 40-145 (156)
245 PF06609 TRI12: Fungal trichot 96.9 0.021 4.5E-07 62.9 14.9 154 37-231 307-464 (599)
246 KOG3574 Acetyl-CoA transporter 96.8 0.13 2.9E-06 52.8 18.7 159 35-228 26-189 (510)
247 KOG2615 Permease of the major 96.7 0.013 2.9E-07 60.0 11.1 152 41-234 261-414 (451)
248 KOG2816 Predicted transporter 96.7 0.018 3.9E-07 61.8 12.6 151 38-231 238-389 (463)
249 KOG0637 Sucrose transporter an 96.7 0.0028 6.2E-08 66.2 6.2 170 40-231 32-202 (498)
250 KOG3626 Organic anion transpor 96.7 0.0075 1.6E-07 67.1 9.4 64 40-103 392-456 (735)
251 PF03137 OATP: Organic Anion T 96.6 0.00056 1.2E-08 74.9 0.0 176 40-235 305-515 (539)
252 KOG4332 Predicted sugar transp 96.5 0.019 4E-07 56.1 10.1 154 64-256 60-217 (454)
253 PRK03612 spermidine synthase; 96.5 0.14 3E-06 56.1 18.0 158 63-258 37-197 (521)
254 KOG0255 Synaptic vesicle trans 96.2 0.2 4.4E-06 54.7 17.2 151 69-263 346-496 (521)
255 KOG1330 Sugar transporter/spin 96.1 0.0036 7.7E-08 65.6 3.0 123 398-534 71-209 (493)
256 TIGR00769 AAA ADP/ATP carrier 96.0 0.33 7.2E-06 52.2 17.3 163 40-232 7-189 (472)
257 PF06963 FPN1: Ferroportin1 (F 95.9 0.084 1.8E-06 56.1 12.2 136 60-229 278-413 (432)
258 PRK15462 dipeptide/tripeptide 95.9 0.33 7.2E-06 52.6 16.7 89 125-231 348-437 (493)
259 PF01770 Folate_carrier: Reduc 95.8 0.23 5E-06 52.2 14.7 156 60-259 23-182 (412)
260 TIGR00880 2_A_01_02 Multidrug 95.8 0.13 2.8E-06 44.2 11.1 74 444-532 63-136 (141)
261 PF02487 CLN3: CLN3 protein; 95.8 3.2 6.9E-05 43.7 24.2 50 444-493 347-396 (402)
262 KOG2325 Predicted transporter/ 95.7 0.024 5.1E-07 60.6 6.9 200 37-255 259-471 (488)
263 PF06779 DUF1228: Protein of u 95.4 0.17 3.6E-06 40.8 9.4 72 51-142 6-77 (85)
264 KOG4332 Predicted sugar transp 89.7 3.3 7.3E-05 40.9 10.3 85 165-255 343-427 (454)
265 COG3104 PTR2 Dipeptide/tripept 89.6 5 0.00011 43.0 12.6 115 126-257 365-485 (498)
266 TIGR00806 rfc RFC reduced fola 89.4 10 0.00022 41.0 14.6 72 444-528 127-198 (511)
267 KOG3098 Uncharacterized conser 88.7 11 0.00023 40.6 14.3 92 121-222 311-402 (461)
268 PF02487 CLN3: CLN3 protein; 86.4 4.8 0.0001 42.4 10.0 62 165-232 334-395 (402)
269 TIGR00939 2a57 Equilibrative N 86.0 3.8 8.3E-05 43.8 9.2 56 166-227 372-427 (437)
270 TIGR00769 AAA ADP/ATP carrier 82.3 78 0.0017 34.2 18.6 68 178-250 278-345 (472)
271 KOG3097 Predicted membrane pro 80.8 30 0.00065 35.4 12.3 114 36-194 25-138 (390)
272 KOG0637 Sucrose transporter an 78.4 4 8.7E-05 43.3 5.6 91 34-140 273-380 (498)
273 PF03092 BT1: BT1 family; Int 77.4 3.6 7.8E-05 43.9 5.3 46 185-236 337-382 (433)
274 COG3202 ATP/ADP translocase [E 70.5 1.6E+02 0.0035 31.8 21.6 169 37-234 24-210 (509)
275 PF01733 Nucleoside_tran: Nucl 69.4 1.5 3.2E-05 44.6 -0.1 56 166-227 248-303 (309)
276 KOG1479 Nucleoside transporter 66.4 1.8E+02 0.0039 30.7 16.6 178 41-256 19-201 (406)
277 PF00854 PTR2: POT family; In 64.4 8.2 0.00018 40.1 4.3 81 444-539 45-128 (372)
278 PF03219 TLC: TLC ATP/ADP tran 62.9 2.3E+02 0.005 30.8 17.9 67 176-247 292-358 (491)
279 TIGR00939 2a57 Equilibrative N 61.7 2.3E+02 0.0049 30.3 15.3 33 165-198 105-137 (437)
280 PF03219 TLC: TLC ATP/ADP tran 56.6 3E+02 0.0064 30.0 23.6 166 39-233 23-205 (491)
281 PF11947 DUF3464: Protein of u 56.6 45 0.00097 30.0 6.9 84 121-223 62-145 (153)
282 KOG1237 H+/oligopeptide sympor 56.5 25 0.00053 39.1 6.4 68 162-235 454-521 (571)
283 KOG1278 Endosomal membrane pro 54.7 93 0.002 33.9 9.9 32 73-104 356-387 (628)
284 PF05631 DUF791: Protein of un 54.5 2.7E+02 0.0058 28.9 14.7 52 175-226 248-300 (354)
285 PF13000 Acatn: Acetyl-coenzym 52.1 2.1E+02 0.0045 31.3 12.0 55 175-235 414-468 (544)
286 PF01770 Folate_carrier: Reduc 51.9 1E+02 0.0022 32.7 9.8 27 78-105 287-313 (412)
287 COG5336 Uncharacterized protei 48.2 85 0.0018 26.4 6.6 26 94-134 60-85 (116)
288 KOG4830 Predicted sugar transp 46.2 22 0.00048 35.1 3.5 46 40-85 201-246 (412)
289 KOG1479 Nucleoside transporter 43.1 64 0.0014 34.0 6.6 34 166-199 343-376 (406)
290 PF09527 ATPase_gene1: Putativ 38.5 1.5E+02 0.0032 21.3 7.0 20 86-105 10-29 (55)
291 PF02554 CstA: Carbon starvati 34.0 5.7E+02 0.012 26.7 12.5 112 74-210 213-327 (376)
292 KOG4112 Signal peptidase subun 29.3 1.4E+02 0.003 24.4 4.9 50 212-264 27-76 (101)
293 PHA02688 ORF059 IMV protein VP 29.0 1.5E+02 0.0032 30.0 6.2 52 89-141 253-304 (323)
294 COG3086 RseC Positive regulato 28.9 2.5E+02 0.0054 25.1 6.9 35 70-105 66-100 (150)
295 PRK10263 DNA translocase FtsK; 28.8 2.2E+02 0.0047 34.8 8.5 34 219-252 142-175 (1355)
296 PF03213 Pox_P35: Poxvirus P35 28.4 1.6E+02 0.0035 29.7 6.4 52 89-141 255-306 (325)
297 PF02990 EMP70: Endomembrane p 27.9 2.9E+02 0.0064 30.3 9.1 32 74-105 291-322 (521)
298 PF06645 SPC12: Microsomal sig 27.4 1.4E+02 0.0031 23.4 4.8 49 212-263 12-60 (76)
299 KOG3574 Acetyl-CoA transporter 25.1 3.9E+02 0.0084 28.4 8.5 49 185-239 388-436 (510)
300 COG3202 ATP/ADP translocase [E 24.1 9.6E+02 0.021 26.2 18.0 70 182-256 300-370 (509)
301 PF07672 MFS_Mycoplasma: Mycop 23.8 5E+02 0.011 25.7 8.8 43 166-212 204-246 (267)
302 PF06813 Nodulin-like: Nodulin 22.1 3.3E+02 0.0072 26.6 7.4 29 457-486 121-149 (250)
303 PF10777 YlaC: Inner membrane 21.4 2.4E+02 0.0053 25.2 5.5 38 229-266 53-90 (155)
304 TIGR01666 YCCS hypothetical me 21.3 9.2E+02 0.02 27.6 11.6 43 119-181 54-96 (704)
305 TIGR01667 YCCS_YHJK integral m 20.7 8.7E+02 0.019 27.8 11.3 22 121-142 56-77 (701)
No 1
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-64 Score=546.14 Aligned_cols=495 Identities=44% Similarity=0.773 Sum_probs=445.5
Q ss_pred cccCCCCCcccc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 041588 23 CVDDRGRTADKR---TTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFL 99 (540)
Q Consensus 23 ~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~l 99 (540)
..+.++.+..+. .++.|+++..++..+.+|+.++|++..++..|+++++|.+...+.-.++.|.+...+.+++||++
T Consensus 17 ~~d~~~~~~~~~~~~~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~l 96 (571)
T KOG1237|consen 17 SVDYRGPLLGSSIAFKTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFL 96 (571)
T ss_pred eeeccCCcccccccceechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444444443 77889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC----CCCCCccCCCchhHHHHHHHHH
Q 041588 100 ADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPAC----KERPCVEVNGGQNGFLLCALGL 175 (540)
Q Consensus 100 aD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l 175 (540)
||.++| |++++.++.++..+|+.++++++..+.++|+.| ....|+.++..+...++.++.+
T Consensus 97 aD~f~g---------------ry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~l 161 (571)
T KOG1237|consen 97 ADSFLG---------------RYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYL 161 (571)
T ss_pred HHHHhH---------------HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHH
Confidence 999999 999999999999999999999999999999997 2245888888899999999999
Q ss_pred HHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHH
Q 041588 176 IALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIV 255 (540)
Q Consensus 176 ~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~ 255 (540)
+++|.|+.+|+..++++|||++.++.++..+.++|+|+|+..++|..++-++..|++++.||.++|.++++++++++++|
T Consensus 162 ia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 162 IALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred heeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHH
Confidence 99999999999999999999988887777788999999999999999999999999999999999999999999999999
Q ss_pred HhcCccccccCCCCChHHHHHHHHHHHHHhhccCccccCccchhhhccccccccccccccCCCchhhhhhhhhccCccc-
Q 041588 256 AAGFPYYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHSSQFRFLDKAAVITDPET- 334 (540)
Q Consensus 256 ~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~- 334 (540)
+.+.+.|++.+|.++|+.++.+|++++.+|++...+ .+++.+ +......+...+++.++++|+|+.+...+.
T Consensus 242 ~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~-~~~~~~------~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~~ 314 (571)
T KOG1237|consen 242 LPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVS-LDPEEL------YYDCTDSVAIEGTKPFRFLDKAALKTSDDLK 314 (571)
T ss_pred HcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCC-Ccchhc------cccccccccccCCcccchhhHhhccCCcccc
Confidence 999999999999999999999999999999987776 332222 011112223445778899999998876532
Q ss_pred --ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhccCCCCCceecCCCccchhHHHHHHHH
Q 041588 335 --VRKDRWRLCTLTQVEELKSFIRILPIWASTLDLAISFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILV 412 (540)
Q Consensus 335 --~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~s~~~~q~~~~~~~~~~g~~i~~~~~~~~n~i~iii~~ 412 (540)
...++|++|+.++|||+|.++|++|+|+..+++++++.|+.++++.|+.+||+++++++++|+++++.+..+.++++.
T Consensus 315 ~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~i 394 (571)
T KOG1237|consen 315 DGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFI 394 (571)
T ss_pred cccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhh
Confidence 346789999999999999999999999999999999999999999999999999985599999999999999999999
Q ss_pred HhhhhhHHhHhhhhcCCCC----c--------------------ccc------c-----c-hhHHHH--------HHHHH
Q 041588 413 PIYEKVIVPILRKLTGQTQ----C--------------------DVK------T-----I-LSHLWH--------SAEVF 448 (540)
Q Consensus 413 p~~~~~~~p~~~r~~~~~~----l--------------------~~~------~-----~-~s~~~~--------~~e~~ 448 (540)
|++||+++|+.||.++++. + |.+ . + +|++|+ ++|+|
T Consensus 395 plydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~~~~~~~~mSi~W~iPQyvLig~~Evf 474 (571)
T KOG1237|consen 395 PLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVSLLVETNPMSILWQIPQYVLLGAGEVF 474 (571)
T ss_pred hhcceeehhhhhhhcCCCCCCChhheeeccchHHHHHHHHHHHHHHHHhhhhhhccCCCCCeeHHHHHHHHHHHHHHHHH
Confidence 9999999999999988763 1 211 2 5 999999 99999
Q ss_pred HhhhhHHHHHhhhccccchhhHhHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccC-cCCCCchhHHHHHHHHHHHHHHH
Q 041588 449 TYVGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLR-NDLNMSKLDYFYWILAGINGLNF 527 (540)
Q Consensus 449 ~~~~~~~~~~~~aP~~~r~~~~~~~~~~~~ig~~l~~~l~~~~~~~~~~~~~~w~~-~~~n~~~~~~~f~~la~l~~~~~ 527 (540)
.+++++||+|+|+|++||+.++|+++++.++|++++.+++.++...++. ..+|++ +|+|++|+|+|||+++.++.++.
T Consensus 475 ~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~~-~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~ 553 (571)
T KOG1237|consen 475 TSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFSTGK-AAEWLGFANLNKGRLDYFYWLLAVYSAVNF 553 (571)
T ss_pred HhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CcccCChhHhhhhHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999999987732 347999 99999999999999999999999
Q ss_pred HHHHHHhhcccCC
Q 041588 528 FVYFWVAWRYKGR 540 (540)
Q Consensus 528 ~~y~~~~~~~~~~ 540 (540)
..|.+++++|+||
T Consensus 554 ~~~~~~~~~y~~~ 566 (571)
T KOG1237|consen 554 LYFLICAKRYDYK 566 (571)
T ss_pred hheEEEEEeeeec
Confidence 9999999999885
No 2
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-46 Score=387.79 Aligned_cols=428 Identities=19% Similarity=0.269 Sum_probs=329.5
Q ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcC----CChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcc
Q 041588 34 RTTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMH----QSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPAL 109 (540)
Q Consensus 34 ~~~~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg----~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~ 109 (540)
...++||.++.++.+|++||++|||+.+.+..|++.+++ +|+++|..+.+.|....|+++++|||+|||++|
T Consensus 15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG---- 90 (498)
T COG3104 15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLG---- 90 (498)
T ss_pred ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence 455688999999999999999999999999999998888 999999999999999999999999999999999
Q ss_pred hhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhh
Q 041588 110 KHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSS 189 (540)
Q Consensus 110 ~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~ 189 (540)
+||+++.|.+++++|.+.++.++ ......++++++++++|.|+++|+.++
T Consensus 91 -----------~~~tI~lGail~~iGh~~L~~~~-------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~ 140 (498)
T COG3104 91 -----------TRRTIVLGAILMAIGHLVLAISS-------------------VSGPGGLYIGLALIIVGTGLFKPNISS 140 (498)
T ss_pred -----------hhHHHHHHHHHHHHHHHHHhccc-------------------cccccHHHHHHHHHHhccccccccHHH
Confidence 99999999999999999999873 013567999999999999999999999
Q ss_pred hhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCccccccC--C
Q 041588 190 FGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQK--P 267 (540)
Q Consensus 190 ~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~~~~--~ 267 (540)
+++|++|++|++ |..+|+++|+++|+|++++|.+.+++.+++||+.+|..+++.+.++++.++++++++.... |
T Consensus 141 llg~ly~~~Dpr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~ 216 (498)
T COG3104 141 LLGELYPKDDPR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVP 216 (498)
T ss_pred HHHHhcCCCCcc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCC
Confidence 999999999986 8999999999999999999999999999999999999999999999999999998776543 2
Q ss_pred CCChHH------HHHHHHHHHHHhhccCccccCccchhhhccccccccccccccCCCchhhhhhhhhccCcccccccccc
Q 041588 268 IGSSLT------RFVQVIVSYVRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHSSQFRFLDKAAVITDPETVRKDRWR 341 (540)
Q Consensus 268 ~~~~l~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~ 341 (540)
...++. ....++...+....... .+.+.+..... . .... ....+-. ...+|
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~----------~-----~~i~--~~~~~~~---~~~~~- 273 (498)
T COG3104 217 DPNPLSFNFLLPVLGGLVVMILAALLTLL--LNQNTFSGVLL----------V-----ISIL--IAIIYFA---EAFRS- 273 (498)
T ss_pred CccchhhhhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHH----------H-----HHHH--HHHHHHH---HHhcc-
Confidence 222211 11111111111000000 00000000000 0 0000 0000000 00111
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH-hhccCCCCCceecCCCccchhHHHHHHHHHhhhhhHH
Q 041588 342 LCTLTQVEELKSFIRILPIWASTLDLAISFAQLSTFFLSQAA-VMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIV 420 (540)
Q Consensus 342 ~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~s~~~~q~~-~~~~~~~~g~~i~~~~~~~~n~i~iii~~p~~~~~~~ 420 (540)
.+.+ +|+|++++++++++..++||++|.|++|.+..|+. +.|++.. |+++|++++|++|+++++++.|+.+++++
T Consensus 274 --~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~-g~~vp~~~fQslNp~~Iii~~pI~a~l~~ 349 (498)
T COG3104 274 --PKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF-GFEVPPAWFQSLNPFFIILFSPILAALWT 349 (498)
T ss_pred --CccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccc-ceecCHHHHHhhCHHHHHHHHHHHHHHHh
Confidence 1233 89999999999999999999999999999998885 4467744 69999999999999999999999999999
Q ss_pred hHhhhhcCCCCccc---------------------c----cc-hhHHHH--------HHHHHHhhhhHHHHHhhhccccc
Q 041588 421 PILRKLTGQTQCDV---------------------K----TI-LSHLWH--------SAEVFTYVGQLEFFYNEATDGTR 466 (540)
Q Consensus 421 p~~~r~~~~~~l~~---------------------~----~~-~s~~~~--------~~e~~~~~~~~~~~~~~aP~~~r 466 (540)
|+.++. +.++... . .. .|++|+ +||++.+|.++|.+++.+|++++
T Consensus 350 ~l~~~~-~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~ 428 (498)
T COG3104 350 KLGRGN-KQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALK 428 (498)
T ss_pred HhhcCC-CCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHH
Confidence 988775 4444211 1 22 788888 99999999999999999999999
Q ss_pred hhhHhHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccCcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 041588 467 SISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDLNMSKLDYFYWILAGINGLNFFVYFWVAWR 536 (540)
Q Consensus 467 ~~~~~~~~~~~~ig~~l~~~l~~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~la~l~~~~~~~y~~~~~~ 536 (540)
|..||.|+++.+.|+.++..+.+.... +. +..+......+|+.++.+.++..+......++
T Consensus 429 s~~ma~wfLt~a~~~~l~g~va~~~~~-~~--------~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~ 489 (498)
T COG3104 429 SFIMAMWFLTVAAGQTLGGQVAGLTAV-TD--------PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPK 489 (498)
T ss_pred HHHHHHHHHHHHHHHHhhceecccccc-cc--------hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999888773210 10 00122334467888888877766655555444
No 3
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=100.00 E-value=8.2e-39 Score=340.77 Aligned_cols=428 Identities=17% Similarity=0.177 Sum_probs=310.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhh
Q 041588 38 GWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFK 117 (540)
Q Consensus 38 ~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~ 117 (540)
|||.++.++..+++|++++|++..+++.|+++++|++..+++.+.+.+....+++++++|+++||++|
T Consensus 7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilG------------ 74 (493)
T PRK15462 7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLG------------ 74 (493)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC------------
Confidence 67899999999999999999999999999999999999999999999999999999999999999889
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588 118 LQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE 197 (540)
Q Consensus 118 ~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~ 197 (540)
|||+++++.++..++.+++.... .....+++++.+.++|.|..+++..++++|+||+
T Consensus 75 ---rrr~iliG~il~~lg~lll~~~~--------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~ 131 (493)
T PRK15462 75 ---NRMAVMLGALLMAIGHVVLGASE--------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEP 131 (493)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHhh--------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCC
Confidence 99999999999999987765431 1123355667777788999999999999999998
Q ss_pred CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCccccccCC-CCChHHH--
Q 041588 198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQKP-IGSSLTR-- 274 (540)
Q Consensus 198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~-~~~~l~~-- 274 (540)
++++ |+++++++|.++|+|++++|.+++++.+.+||+.+|.++++.+++++++++..++.+.+..+ ..++.++
T Consensus 132 ~~~~----R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~ 207 (493)
T PRK15462 132 TDPR----RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATN 207 (493)
T ss_pred CCcc----ccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhh
Confidence 7543 89999999999999999999999999999999999999888888888888776665433211 1111110
Q ss_pred HHHH-----HHH-----HHHhhccCccccCccchhhhccccccccccccccCCCchhhhhh-hhhccCcccccccccccc
Q 041588 275 FVQV-----IVS-----YVRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHSSQFRFLDK-AAVITDPETVRKDRWRLC 343 (540)
Q Consensus 275 ~~~v-----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~-a~~~~~~~~~~~~~~~~~ 343 (540)
..+. ... .+..... .+. . .+..-.... ....+- .. .. .
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~------------~--~~~~~~~~~~~~~~~~-----~~-~~-~ 256 (493)
T PRK15462 208 FLLPNWGWLLVLLVATPALITVLF----------WKE------------W--SVYALIVATIIGLGVL-----AK-IY-R 256 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHH------------H--HHHHHHHHHHHHHHHH-----HH-HH-H
Confidence 0000 000 0000000 000 0 000000000 000000 00 00 0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH-HhhccCCCCCceecCCCccchhHHHHHHHHHhhhhhHHhH
Q 041588 344 TLTQVEELKSFIRILPIWASTLDLAISFAQLSTFFLSQA-AVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPI 422 (540)
Q Consensus 344 ~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~s~~~~q~-~~~~~~~~~g~~i~~~~~~~~n~i~iii~~p~~~~~~~p~ 422 (540)
...+.+|+|++..++++++..++||+.|.|.++.+...+ +++|++++ |+++|++++|++|++.++++.|++.++|.++
T Consensus 257 ~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~-g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l 335 (493)
T PRK15462 257 KAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMF-GYTVPTAMFQSINAFAVMLCGVFLAWVVKES 335 (493)
T ss_pred hcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhc-ceeeCHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence 012347899999999999999999999999999887777 57899988 8999999999999999999999999999877
Q ss_pred hhhhcCCCCccc-----------------------cc-c-hhHHHH--------HHHHHHhhhhHHHHHhhhccccchhh
Q 041588 423 LRKLTGQTQCDV-----------------------KT-I-LSHLWH--------SAEVFTYVGQLEFFYNEATDGTRSIS 469 (540)
Q Consensus 423 ~~r~~~~~~l~~-----------------------~~-~-~s~~~~--------~~e~~~~~~~~~~~~~~aP~~~r~~~ 469 (540)
.||. ++++... .+ . ++.+|+ +||.+.+|.+++++.+.+|++.+|.+
T Consensus 336 ~~~~-~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~ 414 (493)
T PRK15462 336 VAGN-RTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVL 414 (493)
T ss_pred hcCC-CCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHH
Confidence 5542 2333100 01 2 577777 99999999999999999999999999
Q ss_pred HhHHHHHh-HHHHHHHHHHHHHHHhhcCCCCCCccCcCCCCchhHHHHHHHHHHHHHH--HHHHHHHhhcccCC
Q 041588 470 TAIFLSEI-GLGSCLSNALVKIIERATGGQEEGWLRNDLNMSKLDYFYWILAGINGLN--FFVYFWVAWRYKGR 540 (540)
Q Consensus 470 ~~~~~~~~-~ig~~l~~~l~~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~la~l~~~~--~~~y~~~~~~~~~~ 540 (540)
||+|++.. ++|+.++..+.+.......+.+. ..+-+...+..+|..++.+.++. ++.+++..+..|+|
T Consensus 415 mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (493)
T PRK15462 415 TGIYMLLSGAIANYLAGVIADQTSQASFDASG---AINYSINAYIEVFDQITWGALACVGVVLMIWLYQALKFR 485 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCccc---cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999854 79999998888876421100000 00001124556777777766554 45556665555543
No 4
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=100.00 E-value=9.8e-38 Score=343.03 Aligned_cols=306 Identities=27% Similarity=0.510 Sum_probs=261.8
Q ss_pred HHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHH
Q 041588 54 LAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYS 133 (540)
Q Consensus 54 ~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~ 133 (540)
++||++.+++..|+++.+|++.+.+..+.+.+....++.+++||+++|+++| |+++++++.+++.
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG---------------~~~tIl~~~ii~~ 65 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLG---------------KFKTILYLSIVYV 65 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------hHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHH
Q 041588 134 VGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWF 213 (540)
Q Consensus 134 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~ 213 (540)
+|++++++++..+..+ ..+....+++++++++|.|+++|+..++++||++++++ ++|.++|+|+
T Consensus 66 lG~~llai~a~~~~~~-------------~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~f 129 (654)
T TIGR00926 66 VGHALLSFGAIPSSGH-------------PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFF 129 (654)
T ss_pred HHHHHHHhccCccccc-------------chHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHH
Confidence 9999998764311111 12345577899999999999999999999999986542 2488999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcc-------CcchhhhHhHHHHHHHHHHHHhcCccccccCCCCChHHHHHHHHHHHHHhh
Q 041588 214 FFAINMGAIFGITVLVYIQEQK-------GWSVGFGIPTAFTICSIIIVAAGFPYYRYQKPIGSSLTRFVQVIVSYVRNH 286 (540)
Q Consensus 214 ~~~~~iG~~i~p~v~~~l~~~~-------g~~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~ 286 (540)
|+++|+|+++++++.+++++.. ||..+|.+++++++++++++..++++++..+|.++++.++.+++..++|++
T Consensus 130 Y~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~ 209 (654)
T TIGR00926 130 YFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKR 209 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHh
Confidence 9999999999999999998543 699999999999999999999999999888888888888889988887765
Q ss_pred ccCccccCccchhhhccccccccccccccCCCchhhhhhhhhccCcccccccccccccchhHHHHHHHHHHHHHHHHHHH
Q 041588 287 LEGVEVEHEDDLYEVTTKESDIFGARKLSHSSQFRFLDKAAVITDPETVRKDRWRLCTLTQVEELKSFIRILPIWASTLD 366 (540)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~ 366 (540)
..... .+ ...+|+|+++... ..+++||+|++++++++++..++
T Consensus 210 ~~~~~-~~-----------------------~~~~~ld~a~~~~-------------~~~~V~evkrll~il~l~i~~~i 252 (654)
T TIGR00926 210 FSTRS-EH-----------------------WPLHWLDYAKDKH-------------DIRMIRSTKRLLRVLVLFIPLPM 252 (654)
T ss_pred hccCC-cc-----------------------cchhHHHHhcccc-------------ccchHHHHHHHHHHHHHHHHHHH
Confidence 32111 00 0125667664422 24578999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHhhccCCCCCceecCCCccchhHHHHHHHHHhhhhhHHhHhhhhcC
Q 041588 367 LAISFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKLTG 428 (540)
Q Consensus 367 ~~~~~~q~~s~~~~q~~~~~~~~~~g~~i~~~~~~~~n~i~iii~~p~~~~~~~p~~~r~~~ 428 (540)
||+.+.|+.+.++.|+.+||++++ ++.+|+++++.+|++.++++.|++++.++|+++|++.
T Consensus 253 fw~~~~Q~~s~~~~qa~~m~~~l~-g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~ 313 (654)
T TIGR00926 253 FWALFDQQGSRWTLQATRMDGDVG-GFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGT 313 (654)
T ss_pred HHHHHhcchhHHHHHHHHhcCccC-CEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCC
Confidence 999999999999999999998887 7899999999999999999999999989998877643
No 5
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=100.00 E-value=6.5e-37 Score=329.95 Aligned_cols=426 Identities=15% Similarity=0.171 Sum_probs=312.9
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhh
Q 041588 35 TTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHA 114 (540)
Q Consensus 35 ~~~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~ 114 (540)
.+++||.++.+++.+++||++||++.++++.|+++++|++..++..+.+.+....++.++++|+++||++|
T Consensus 9 ~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G--------- 79 (489)
T PRK10207 9 LLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLG--------- 79 (489)
T ss_pred hhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccc---------
Confidence 34688999999999999999999999999999999999999999999999999999999999999999559
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhcc
Q 041588 115 IFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQ 194 (540)
Q Consensus 115 ~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~ 194 (540)
|||+++++.+++.++.+++.++.. ....++++++++++|.|+.+|+..++++|+
T Consensus 80 ------~r~~~~~g~~~~~~g~~~~~~~~~--------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~ 133 (489)
T PRK10207 80 ------TKRTIVLGAIVLAIGYFMTGMSLL--------------------KPDLIFIALGTIAVGNGLFKANPASLLSKC 133 (489)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHhcc--------------------chhHHHHHHHHHHhccccccCCHHHHHHHh
Confidence 999999999999999999887631 123456789999999999999999999999
Q ss_pred CCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCcccccc--CCCCChH
Q 041588 195 YDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQ--KPIGSSL 272 (540)
Q Consensus 195 ~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~~~--~~~~~~l 272 (540)
||+++++ |+.+++++|++.|+|+.++|.+++++.++.||+++|+++.+.++++++.+...++.+++. +|++++.
T Consensus 134 ~p~~~~~----~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (489)
T PRK10207 134 YPPKDPR----LDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPM 209 (489)
T ss_pred cCCCchh----hhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccch
Confidence 9887632 678999999999999999999999999999999999998777777777777766555443 2323221
Q ss_pred --HHHHHHH------HHHHHhhccCccccCccchhhhccccccccccccccCCCchhhhhhhhhccCccccccccccccc
Q 041588 273 --TRFVQVI------VSYVRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHSSQFRFLDKAAVITDPETVRKDRWRLCT 344 (540)
Q Consensus 273 --~~~~~v~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~ 344 (540)
....... ...+... . ++.. ...... ...+ . .....++... .+
T Consensus 210 d~~~~~l~~~~~~~~~~~~~~~----~-~~~~-~~~~~~---~~~~---~--i~~~~f~~~~----------------~~ 259 (489)
T PRK10207 210 SFSKLLLVLLGSVVMIFVCAWL----M-HNVE-VANLVL---IVLS---I--VVTIIFFREA----------------FK 259 (489)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH----H-hhhh-HHHHHH---HHHH---H--HHHHHHHHHH----------------hc
Confidence 1111100 0000000 0 0000 000000 0000 0 0000001100 01
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH-hhccCCCCCceecCCCccchhHHHHHHHHHhhhhhHHhHh
Q 041588 345 LTQVEELKSFIRILPIWASTLDLAISFAQLSTFFLSQAA-VMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPIL 423 (540)
Q Consensus 345 ~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~s~~~~q~~-~~~~~~~~g~~i~~~~~~~~n~i~iii~~p~~~~~~~p~~ 423 (540)
.+ ..++++.+..+++++..+++|+++.|..+.+..+.. ++|++.. |+.+++++++++|++.++++.|+.+++++++.
T Consensus 260 ~~-~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~-G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~ 337 (489)
T PRK10207 260 LD-KTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEIL-GFSINPVSFQALNPFWVVVASPILAGIYTHLG 337 (489)
T ss_pred CC-HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhcccccc-ceEECHHHHHhHhHHHHHHHHHHHHHHHHHHh
Confidence 11 344667777888888999999999999988877775 4676655 78999999999999999999999998876665
Q ss_pred hhhcCCCC----c-----------------cc-c---cc-hhHHHH--------HHHHHHhhhhHHHHHhhhccccchhh
Q 041588 424 RKLTGQTQ----C-----------------DV-K---TI-LSHLWH--------SAEVFTYVGQLEFFYNEATDGTRSIS 469 (540)
Q Consensus 424 ~r~~~~~~----l-----------------~~-~---~~-~s~~~~--------~~e~~~~~~~~~~~~~~aP~~~r~~~ 469 (540)
+|. .+++ + +. . .. .+.+|+ +||.+.+|.+++++++.+|++++|.+
T Consensus 338 ~r~-~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~ 416 (489)
T PRK10207 338 SKG-KDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFI 416 (489)
T ss_pred hCC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHH
Confidence 543 2222 0 00 0 11 455666 99999999999999999999999999
Q ss_pred HhHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccCcCC-CCchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 041588 470 TAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDL-NMSKLDYFYWILAGINGLNFFVYFWVAWRYK 538 (540)
Q Consensus 470 ~~~~~~~~~ig~~l~~~l~~~~~~~~~~~~~~w~~~~~-n~~~~~~~f~~la~l~~~~~~~y~~~~~~~~ 538 (540)
+|++++..++|+.+|..+.+.... ... .. |+. .++.+.++|..+++.+++..++++.+.++++
T Consensus 417 ~g~~~l~~~ig~~lg~~l~~~~~~-~~~---~~--~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~ 480 (489)
T PRK10207 417 LGMWFLTQAAAFLLGGYVATFTAV-PDN---IT--DPLETLPVYTNVFGKIGLVTLGVAVVMALMVPWLN 480 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-ccc---cc--cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887642 100 00 111 1234678899999888887777766666543
No 6
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=100.00 E-value=5.2e-37 Score=330.13 Aligned_cols=419 Identities=16% Similarity=0.162 Sum_probs=309.6
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHh--cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhh
Q 041588 36 TGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVRE--MHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVH 113 (540)
Q Consensus 36 ~~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~--lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~ 113 (540)
.+++|.++.+++.+++|++++|++.++++.|++++ +|++..+++.+.+.+.+..+++++++|+++||++|
T Consensus 6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G-------- 77 (475)
T TIGR00924 6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWG-------- 77 (475)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcc--------
Confidence 35678899999999999999999999999999987 99999999999999999999999999999999559
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhc
Q 041588 114 AIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGAD 193 (540)
Q Consensus 114 ~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d 193 (540)
|||+++++.+++.++.++++++. +...+++++.+.++|.|+..|+..++++|
T Consensus 78 -------~~~~l~~~~~~~~~g~~~~~~~~---------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~ 129 (475)
T TIGR00924 78 -------TKKTMVLGGIVLMLGHFMLAMSI---------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGK 129 (475)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHhcc---------------------cHhHHHHHHHHHHhccccccCCHHHHHHH
Confidence 99999999999999998888752 34567788889999999999999999999
Q ss_pred cCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCccccccCCCCChHH
Q 041588 194 QYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQKPIGSSLT 273 (540)
Q Consensus 194 ~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~ 273 (540)
++|+++++ +|+++++++|++.|+|+.+||.+++++.+++||++.|+++++.++++++++...++.+++.++++++..
T Consensus 130 ~~~~~~~~---~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 206 (475)
T TIGR00924 130 LYERGDMP---RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLS 206 (475)
T ss_pred hcCCCCcc---cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcc
Confidence 99876522 278899999999999999999999999999999999999888777787777777766654433222211
Q ss_pred H-----HH--HH----HHHHHHhhccCccccCccchhhhccccccccccccccCCCchhhhhhhhhccCccccccccccc
Q 041588 274 R-----FV--QV----IVSYVRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHSSQFRFLDKAAVITDPETVRKDRWRL 342 (540)
Q Consensus 274 ~-----~~--~v----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~ 342 (540)
+ .. +. +....+... ... +... .. ...+ ...-+...+... ...++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~-~~------------~~~~-----~~~~~~~~~~~~-~~~~~--- 261 (475)
T TIGR00924 207 GQGKTYGKLLLALLAALALVFFCAW-LMH--HVVI-AN------------ILLM-----TVTLAVIIFFFR-LAFKP--- 261 (475)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH-HHh--ccHH-HH------------HHHH-----HHHHHHHHHHHH-HHHhc---
Confidence 1 00 00 000011000 000 0000 00 0000 000000000000 00000
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHhhccCCCCCceecCCCccchhHHHHHHHHHhhhhhHHh
Q 041588 343 CTLTQVEELKSFIRILPIWASTLDLAISFAQLSTFFLSQ-AAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVP 421 (540)
Q Consensus 343 ~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~s~~~~q-~~~~~~~~~~g~~i~~~~~~~~n~i~iii~~p~~~~~~~p 421 (540)
+.++ +++++..+++++++..+++|+.|.|..+.+..+ ..++|++++ ++++|+++++++|++.+++++|++++++.+
T Consensus 262 -~~~~-~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~-~~~ip~~~~~~~n~~~iil~~p~~~~~~~~ 338 (475)
T TIGR00924 262 -RLDA-VARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML-GMSVPVIWFQSLNPFWVVVGSPVLAMIWTR 338 (475)
T ss_pred -cCCH-HHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-ceEECHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 1122 344555678999999999999999999987654 456888877 789999999999999999999999987766
Q ss_pred HhhhhcCCCC--c--cc--------------------ccc-hhHHHH--------HHHHHHhhhhHHHHHhhhccccchh
Q 041588 422 ILRKLTGQTQ--C--DV--------------------KTI-LSHLWH--------SAEVFTYVGQLEFFYNEATDGTRSI 468 (540)
Q Consensus 422 ~~~r~~~~~~--l--~~--------------------~~~-~s~~~~--------~~e~~~~~~~~~~~~~~aP~~~r~~ 468 (540)
+.||. ..++ . .. .+. ++.+|+ +||++.+|++++++++++|+++||.
T Consensus 339 l~~~~-~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~ 417 (475)
T TIGR00924 339 LGRKG-KDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQ 417 (475)
T ss_pred HHhCC-CCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHH
Confidence 66652 2222 1 00 012 477777 9999999999999999999999999
Q ss_pred hHhHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccCcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 041588 469 STAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDLNMSKLDYFYWILAGINGLNFFVYFWVAWRY 537 (540)
Q Consensus 469 ~~~~~~~~~~ig~~l~~~l~~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~la~l~~~~~~~y~~~~~~~ 537 (540)
++|++.+..++|+.+++.+....... .+...+|..++.++++..++++...++.
T Consensus 418 ~~g~~~l~~~~g~~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (475)
T TIGR00924 418 MLGMWFLAQAMGSLLGGYLATFGAVP---------------QGVTGVFGKIGLVTLLVGVVMALMVPWL 471 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc---------------cchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988765421 1233577777777777766666666554
No 7
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=100.00 E-value=1.4e-34 Score=313.10 Aligned_cols=425 Identities=15% Similarity=0.208 Sum_probs=304.1
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhh
Q 041588 36 TGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAI 115 (540)
Q Consensus 36 ~~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~ 115 (540)
.+++|.++.+++.+++|++++|++.++++.|+++++|++..+++.+.+.+....+..++++|+++||++|
T Consensus 17 ~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G---------- 86 (500)
T PRK09584 17 FKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLG---------- 86 (500)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------
Confidence 3567889999999999999999999999999999999999999998888888888888899999999559
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccC
Q 041588 116 FKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQY 195 (540)
Q Consensus 116 ~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~ 195 (540)
||++++++.++..++..+++++. .....+++++.++++|.|...++..++++|++
T Consensus 87 -----~r~~~~~g~~~~~ig~~l~~~~~--------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f 141 (500)
T PRK09584 87 -----TKRVIMLGAIVLAIGYALVAWSG--------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCY 141 (500)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHhc--------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhc
Confidence 99999999999999988887652 12445677888999999999999999999999
Q ss_pred CCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCcccccc--CCCCChHH
Q 041588 196 DEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQ--KPIGSSLT 273 (540)
Q Consensus 196 ~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~~~--~~~~~~l~ 273 (540)
|+++++ |..+++++|++.|+|+.++|.+++++.++.||++.|+++++..+++++.++..++.+++. +|++++..
T Consensus 142 ~~~~~~----~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 217 (500)
T PRK09584 142 EKDDPR----LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPIN 217 (500)
T ss_pred CCCchh----hhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccc
Confidence 876532 566889999999999999999999999999999999998877777776665554443332 22222211
Q ss_pred --H----HHHHHHHH-HHhhccCccccCccchhhhccccccccccccccCCCchhhhhhhhhccCcccccccccccccch
Q 041588 274 --R----FVQVIVSY-VRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHSSQFRFLDKAAVITDPETVRKDRWRLCTLT 346 (540)
Q Consensus 274 --~----~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~ 346 (540)
. ...+.... ....... +.+. ... ...........+.... .+. .
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~-----------~~~~~~~~~~~~~~~~-------------~~~-~ 267 (500)
T PRK09584 218 YRKLLLTIVGVVALIAIATWLLH----NQEI-ARM-----------ALGVVALGIVVIFGKE-------------AFA-M 267 (500)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHh----cchH-HHH-----------HHHHHHHHHHHHHHHH-------------Hhh-c
Confidence 1 11111111 1110000 0000 000 0000000000000000 011 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH-hhccCCCCCceecCCCccchhHHHHHHHHHhhhhhHHhHhhh
Q 041588 347 QVEELKSFIRILPIWASTLDLAISFAQLSTFFLSQAA-VMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRK 425 (540)
Q Consensus 347 ~v~~~k~~~~~l~~~~~~~~~~~~~~q~~s~~~~q~~-~~~~~~~~g~~i~~~~~~~~n~i~iii~~p~~~~~~~p~~~r 425 (540)
+.+|+++.+..+++++..++||+.+.|.++.+..|+. ++|+++. |+.+|+++++++|++.++++.|+.++++.++.+|
T Consensus 268 ~~~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~-g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r 346 (500)
T PRK09584 268 KGAARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL-GIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR 346 (500)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcccccc-ceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC
Confidence 2356677777888899999999999999999988875 4666666 7899999999999999999999999987766655
Q ss_pred hcCCCCccc----------------c----cc-hhHHHH--------HHHHHHhhhhHHHHHhhhccccchhhHhHHHHH
Q 041588 426 LTGQTQCDV----------------K----TI-LSHLWH--------SAEVFTYVGQLEFFYNEATDGTRSISTAIFLSE 476 (540)
Q Consensus 426 ~~~~~~l~~----------------~----~~-~s~~~~--------~~e~~~~~~~~~~~~~~aP~~~r~~~~~~~~~~ 476 (540)
.....++.. . .. ++.+|+ ++|++.+|.+++++++.+|+++||+++|+|++.
T Consensus 347 ~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~ 426 (500)
T PRK09584 347 LPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLT 426 (500)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 321111100 0 11 445666 799999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCCccCcC-CCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 041588 477 IGLGSCLSNALVKIIERATGGQEEGWLRND-LNMSKLDYFYWILAGINGLNFFVYFWVAWR 536 (540)
Q Consensus 477 ~~ig~~l~~~l~~~~~~~~~~~~~~w~~~~-~n~~~~~~~f~~la~l~~~~~~~y~~~~~~ 536 (540)
.++|+.++..+.+.... + .=..+. ...+.+..+|..+++++++..++++...++
T Consensus 427 ~a~g~~~~g~~~~~~~~--~----~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~ 481 (500)
T PRK09584 427 TAGAALIAGYVANLMAV--P----DNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPK 481 (500)
T ss_pred HHHHHHHHHHHHHHhcc--c----cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988875541 0 000011 111346778888888777666555555544
No 8
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=99.96 E-value=3.7e-29 Score=261.18 Aligned_cols=329 Identities=35% Similarity=0.561 Sum_probs=224.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChH
Q 041588 122 FRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEK 201 (540)
Q Consensus 122 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~ 201 (540)
+|+++++.+++++|++++++++..+.. +++.+...+++++.++++|.|+++|++.++++||++++++
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~~------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~- 67 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPSL------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDD- 67 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSSC------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTT-
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcchh------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccch-
Confidence 589999999999999999888654332 1234578899999999999999999999999999998742
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCcccccc-CCCCChHHH-HHHHH
Q 041588 202 EAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQ-KPIGSSLTR-FVQVI 279 (540)
Q Consensus 202 ~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~~~-~~~~~~l~~-~~~v~ 279 (540)
.+|.++|+|+|+++|+|+.+++.+.+++++++||.++|+++++++++++++++.++++|++. +|.++++.+ ...+.
T Consensus 68 --~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~ 145 (372)
T PF00854_consen 68 --SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVL 145 (372)
T ss_dssp --THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHH
T ss_pred --hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHH
Confidence 23899999999999999999999999999999999999999999999999999999999988 678888887 45555
Q ss_pred HHHHHhhccCccccCccchhhhccccccccccccccCCCchhhhhhhhhccCccccccccccc-ccchhHHHHHHHHHHH
Q 041588 280 VSYVRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHSSQFRFLDKAAVITDPETVRKDRWRL-CTLTQVEELKSFIRIL 358 (540)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~-~~~~~v~~~k~~~~~l 358 (540)
....+++....+ .....+++.....+ +.... ......+.+..... ....|.. ++++++++.|.+.+.+
T Consensus 146 ~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~k~~~~~~ 214 (372)
T PF00854_consen 146 VAAFKKRKLAVP-KGSSWLDWALFQYS----ERSIF--GIIVFIRAAVIFFP----EIFFWALFCQVQRVEELKALIRFL 214 (372)
T ss_dssp HHHHHHHCCCH--HHHHHHHHHHHHHC----CCCCC--CCCCHHHHHHHHCC----CHHHHTTTSSTTTHHHCCHHHCHH
T ss_pred HHHHHHhhcccc-cchHHHHHhhhhhh----hhhhh--hhhhhccchhhhhh----hhhhcccCCccceeeeeeeeeecc
Confidence 555565554443 11111111110000 00000 00011111111000 0111221 4567889999999999
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHhhccCCCCCceecCCCccchhHHHHHHHHHhhhhhHHhHhhhhcCCCC-c-----
Q 041588 359 PIWASTLDLAISFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKLTGQTQ-C----- 432 (540)
Q Consensus 359 ~~~~~~~~~~~~~~q~~s~~~~q~~~~~~~~~~g~~i~~~~~~~~n~i~iii~~p~~~~~~~p~~~r~~~~~~-l----- 432 (540)
+.+...++++..+.|..++...|..++|+.+++.+++|+++++.+|++.++++.|++|++++|+.|+. ..++ +
T Consensus 215 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~~-~~~~~~~k~~~ 293 (372)
T PF00854_consen 215 PIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRRG-IQPSPPQKFGI 293 (372)
T ss_dssp HCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT-------HHHHHH
T ss_pred ccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhhc-ccchhhhhhhH
Confidence 99999999999999999999999989988887238999999999999999999999999999999833 3332 1
Q ss_pred ---------------ccc---------------cc-hhHHHHHHHHHHhhhhHHHHHhhhccccchhhHhHHHHHh
Q 041588 433 ---------------DVK---------------TI-LSHLWHSAEVFTYVGQLEFFYNEATDGTRSISTAIFLSEI 477 (540)
Q Consensus 433 ---------------~~~---------------~~-~s~~~~~~e~~~~~~~~~~~~~~aP~~~r~~~~~~~~~~~ 477 (540)
|.+ .+ ++++|+++|.+.++.+.+..++.+|++..+..+|+++...
T Consensus 294 G~~~~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~~ 369 (372)
T PF00854_consen 294 GMVFAILAMFVAAIVEIRRLCYAQPCGKVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFALS 369 (372)
T ss_dssp H-HHHHHHHHTTTHHHH---HH----TT--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhcccccCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHHh
Confidence 221 12 5566669999999999997777777777777777776544
No 9
>PRK10054 putative transporter; Provisional
Probab=99.85 E-value=6e-19 Score=185.76 Aligned_cols=176 Identities=14% Similarity=0.203 Sum_probs=150.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhh
Q 041588 38 GWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFK 117 (540)
Q Consensus 38 ~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~ 117 (540)
.+|+++.+++..++...+++.+.++++.|+++++|++..+.++..+.+.+...++.++.|+++||+ |
T Consensus 5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g------------ 71 (395)
T PRK10054 5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-D------------ 71 (395)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C------------
Confidence 347788899999999999999999999999999999999999999999999999999999999998 9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588 118 LQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE 197 (540)
Q Consensus 118 ~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~ 197 (540)
||+++.++.++..++.+++.++. +...+++.+.+.+.+.+...++..+..+|.+|+
T Consensus 72 ---~k~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 127 (395)
T PRK10054 72 ---KKRYMLLAITAFASGFIAIPLVN---------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSS 127 (395)
T ss_pred ---cchhHHHHHHHHHHHHHHHHHHh---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 99999999988888888777662 345566666677777677778888888999987
Q ss_pred CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588 198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAA 257 (540)
Q Consensus 198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~ 257 (540)
++ |++++++.+...++|..++|.+++++.+ .||+..|++.++..+++++....
T Consensus 128 ~~------~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~ 180 (395)
T PRK10054 128 TS------KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQI 180 (395)
T ss_pred hH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHH
Confidence 65 8999999999999999999999999875 69999999877776666544433
No 10
>PRK03545 putative arabinose transporter; Provisional
Probab=99.85 E-value=1.8e-18 Score=181.65 Aligned_cols=174 Identities=12% Similarity=0.129 Sum_probs=144.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhc
Q 041588 39 WKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKL 118 (540)
Q Consensus 39 ~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~ 118 (540)
|...+.+.+..++.....|...+.+| .+.+++|.+..+.+...+.+.+...++.++.|+++||+ |
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g------------- 72 (390)
T PRK03545 8 WLRVVTLALAAFIFNTTEFVPVGLLS-DIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-E------------- 72 (390)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHcchH-HHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-C-------------
Confidence 44456666656665555554444444 45678999999999999999999999999999999998 9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588 119 QGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA 198 (540)
Q Consensus 119 ~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~ 198 (540)
|||++..+.++..++.+....+ .+.+.++++++++|++.+...+...++..|++|++
T Consensus 73 --~r~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~ 129 (390)
T PRK03545 73 --RRKLLIGLFVLFIASHVLSALA---------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAG 129 (390)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChh
Confidence 9999999999999998888776 35778888999999999888888889999999987
Q ss_pred ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHH
Q 041588 199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVA 256 (540)
Q Consensus 199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~ 256 (540)
+ |+.+++++..+.++|..++|.+++.+.+..||++.|++.++..++..+...
T Consensus 130 ~------r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~ 181 (390)
T PRK03545 130 K------KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLI 181 (390)
T ss_pred h------hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 6 999999999999999999999999999989999999987776655544433
No 11
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.85 E-value=9.2e-19 Score=184.66 Aligned_cols=171 Identities=15% Similarity=0.192 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccch
Q 041588 43 PFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRF 122 (540)
Q Consensus 43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~ 122 (540)
+.++...++.+.+++.+.+.++.|+.+++|+|..+.++..+.......+..+++|+++||+ | ||
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g---------------~k 76 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-G---------------AK 76 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-C---------------ch
Confidence 6777889999999999999999999999999999999999999999999999999999998 9 99
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHH
Q 041588 123 RTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKE 202 (540)
Q Consensus 123 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~ 202 (540)
+++.++.++..++.+.+... .+.+.+++.+++.+++.+...|+..++..|.+|+++
T Consensus 77 ~~l~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--- 132 (400)
T PRK11646 77 PMIVTGMLMRAAGFATMAIA---------------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ--- 132 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH---
Confidence 99999999999988888765 246677888899999988888888999999998766
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588 203 AIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAA 257 (540)
Q Consensus 203 ~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~ 257 (540)
|++++++.+...++|..++|.+++++. ..||++.|++.++..+++.++...
T Consensus 133 ---~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~ 183 (400)
T PRK11646 133 ---RGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAW 183 (400)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 679999999877665555444333
No 12
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.83 E-value=2e-17 Score=173.91 Aligned_cols=174 Identities=14% Similarity=0.030 Sum_probs=147.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+.+..+++..+...+......+.++.|+.+++|.|..+.+++.+.+.+...++.++.|+++||+ |
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g-------------- 79 (399)
T PRK05122 15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-G-------------- 79 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-C--------------
Confidence 5677788888888899888899999999999999999999999999999999999999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
|||++..+.+++.++.+.+..+..... ....+...+++.+++.|++.+...++..+...|.+|+++
T Consensus 80 -~r~~l~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~ 145 (399)
T PRK05122 80 -PKKAVVFGLCGCALSGLLYLLAGLLAA-------------WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH 145 (399)
T ss_pred -CcchHHHHHHHHHHHHHHHHHhhhhhc-------------cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh
Confidence 999999999888887666555421110 001245678889999999999999999898999998876
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHH
Q 041588 200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFT 248 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~ 248 (540)
|++..+++..+.++|..++|.+++++.+..||+..+++..+..
T Consensus 146 ------r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~ 188 (399)
T PRK05122 146 ------TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLA 188 (399)
T ss_pred ------hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 8899999989999999999999999999999998887655543
No 13
>PRK12382 putative transporter; Provisional
Probab=99.83 E-value=1.4e-17 Score=174.72 Aligned_cols=172 Identities=10% Similarity=0.027 Sum_probs=141.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+.++.+.+..++...+.....+.+|.|+.+++|.|..+.+.+.+.+.....++.+++|+++||+ |
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g-------------- 79 (392)
T PRK12382 15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-G-------------- 79 (392)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-c--------------
Confidence 5667777777888888888888999999999999999999999999999999999999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
|||+++.+.++..++.+........+.. ...+...+++++++.|++.+...+...+...|.+|+++
T Consensus 80 -~r~~l~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~ 145 (392)
T PRK12382 80 -AKRSALQGMLACGLAGLAYLLAAILPVS-------------APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH 145 (392)
T ss_pred -chHHHHHHHHHHHHHHHHHHhhhccccc-------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 9999999988777665443333211110 01356778899999999999888888888899998876
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHH
Q 041588 200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTA 246 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~ 246 (540)
|+++++++..+.++|..++|.+++++.+..||+..+.+..+
T Consensus 146 ------r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~ 186 (392)
T PRK12382 146 ------SGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMV 186 (392)
T ss_pred ------cchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 99999999999999999999999999998999977654433
No 14
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.83 E-value=2e-17 Score=174.23 Aligned_cols=177 Identities=15% Similarity=0.135 Sum_probs=145.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhh
Q 041588 37 GGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIF 116 (540)
Q Consensus 37 ~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~ 116 (540)
.+|.......+..+++.+..+.....+|. +.+++|.+..+.+.+.+.+.++..++.++.|+++||+ |
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g----------- 78 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVAAPR-MAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-G----------- 78 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-----------
Confidence 34445555556666666666666555554 4567999999999999999999999999999999998 9
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588 117 KLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD 196 (540)
Q Consensus 117 ~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~ 196 (540)
|||++.++.++..++.+++... .+...+++.+++.|++.+...+...++.+|.+|
T Consensus 79 ----~r~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~ 133 (406)
T PRK11551 79 ----RKRILIVSVALFGLFSLATAQA---------------------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVG 133 (406)
T ss_pred ----CchhHHHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcC
Confidence 9999999998888887776665 246778889999999999988999999999998
Q ss_pred CCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588 197 EADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAA 257 (540)
Q Consensus 197 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~ 257 (540)
+++ |++.+++++.+.++|+.+++.+++.+.+..+|+..|++.+++.++..++...
T Consensus 134 ~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (406)
T PRK11551 134 PRL------RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMR 188 (406)
T ss_pred HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 876 9999999999999999999999988888889999998876655554444333
No 15
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.83 E-value=6.3e-18 Score=175.31 Aligned_cols=155 Identities=20% Similarity=0.212 Sum_probs=135.5
Q ss_pred HHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHh
Q 041588 63 MTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVS 142 (540)
Q Consensus 63 l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~ 142 (540)
...++.+++|.+..+.+.+.+.+.+...++.++.|+++||+ | ||+++.++.++..++..++..+
T Consensus 16 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g---------------~r~~~~~~~~~~~~~~~~~~~~ 79 (399)
T TIGR00893 16 AAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-G---------------ARKTLAVFIVIWGVFTGLQAFA 79 (399)
T ss_pred hHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-C---------------cceeeHHHHHHHHHHHHHHHHH
Confidence 34457789999999999999999999999999999999998 9 9999999999999988888776
Q ss_pred cccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHH
Q 041588 143 GSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAI 222 (540)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~ 222 (540)
.+.+.+++++++.|++.+...+...++..|.+|+++ |+..+++.+...++|..
T Consensus 80 ---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~ 132 (399)
T TIGR00893 80 ---------------------GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGI 132 (399)
T ss_pred ---------------------cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHH
Confidence 247788899999999999999999999999998876 99999999999999999
Q ss_pred HHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588 223 FGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFP 260 (540)
Q Consensus 223 i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~ 260 (540)
++|.+++++.+..||++.|++.++..++..++.....+
T Consensus 133 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (399)
T TIGR00893 133 IGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIP 170 (399)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheec
Confidence 99999999999999999998877766655555444333
No 16
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.82 E-value=2.5e-17 Score=173.31 Aligned_cols=173 Identities=14% Similarity=0.049 Sum_probs=141.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhH-----HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhh
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPT-----AGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHA 114 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~-----a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~ 114 (540)
|....+.+..++...+++...+.+|.|++ ++|.+..+ .+.+.+++.+...++.++.|+++||+ |
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g--------- 82 (408)
T PRK09874 14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-G--------- 82 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-C---------
Confidence 45566677888888888888899999986 58888654 37888888999999999999999998 9
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhcc
Q 041588 115 IFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQ 194 (540)
Q Consensus 115 ~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~ 194 (540)
||+++..+.++..++.+++... .+.+.+++++++.+++.+ ..+...+...|+
T Consensus 83 ------~r~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~ 134 (408)
T PRK09874 83 ------RKIMLLRSALGMGIVMVLMGLA---------------------QNIWQFLILRALLGLLGG-FVPNANALIATQ 134 (408)
T ss_pred ------cHHHHHHHHHHHHHHHHHHHHH---------------------hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHh
Confidence 9999999998888888777665 246678888888888755 456677788888
Q ss_pred CCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588 195 YDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAA 257 (540)
Q Consensus 195 ~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~ 257 (540)
+|+++ |+...++++.+.++|..++|.+++++.+..||+..|++.++..+++.+....
T Consensus 135 ~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (408)
T PRK09874 135 VPRNK------SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLF 191 (408)
T ss_pred cCHhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 88765 8899999999999999999999999999899999998877766655554433
No 17
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.80 E-value=3.9e-17 Score=168.20 Aligned_cols=175 Identities=14% Similarity=0.086 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchH
Q 041588 44 FIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFR 123 (540)
Q Consensus 44 ~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~ 123 (540)
.++...++..++.......+|.|.. +++.+..+.+.+.+.+.+...++.++.|+++||+ | |||
T Consensus 3 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g---------------~r~ 65 (365)
T TIGR00900 3 LLFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-D---------------RKK 65 (365)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-c---------------hhH
Confidence 3556777777777777788888876 4899999999999999999999999999999998 9 999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHH
Q 041588 124 TLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEA 203 (540)
Q Consensus 124 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~ 203 (540)
+++.+.++..++..++......+ ..+.+.+++++++.+++.+...++..++.+|.+|+++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---- 125 (365)
T TIGR00900 66 VMIGADLIRAVLVAVLPFVALLG----------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ---- 125 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH----
Confidence 99999988888777776653111 1257788889999999999999999999999998875
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588 204 IQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAA 257 (540)
Q Consensus 204 ~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~ 257 (540)
|++.+++++.+.++|..++|.+++++.+..||++.|++.++..+++.+....
T Consensus 126 --~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 177 (365)
T TIGR00900 126 --LTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVS 177 (365)
T ss_pred --HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999899999998877666555544433
No 18
>PRK10504 putative transporter; Provisional
Probab=99.80 E-value=1.5e-16 Score=171.19 Aligned_cols=178 Identities=14% Similarity=0.126 Sum_probs=152.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+.+|.+.+..++..+..+.+.+.+|.|.. ++|.+..+.+.+.+.+.+...++.+++|+++||+ |
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g-------------- 73 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-G-------------- 73 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c--------------
Confidence 46788888888888888888888888875 6999999999999999999999999999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
|||+++.+..+..++.++...+ .+...+++++++.|++.+...|...+...|.+|+++
T Consensus 74 -~r~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 131 (471)
T PRK10504 74 -VRNIFFTAIVLFTLGSLFCALS---------------------GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ 131 (471)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHh---------------------CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH
Confidence 9999999988888888776654 246678889999999999999999999999998765
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCcc
Q 041588 200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPY 261 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~ 261 (540)
|++++++.+...++|..++|.+++++.++.||++.|++.....+++.++.....++
T Consensus 132 ------~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 132 ------YMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred ------HHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 88999999999999999999999999999999999998777666665555444443
No 19
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.80 E-value=5.9e-17 Score=172.74 Aligned_cols=167 Identities=14% Similarity=0.033 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccch
Q 041588 43 PFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRF 122 (540)
Q Consensus 43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~ 122 (540)
+..++..++..+..+.+...+|.+. +++|++..+.+.+.+.+.++..++.+++|+++||+ | ||
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g---------------~r 88 (434)
T PRK11663 26 ITMYLGYALFYFTRKSFNAAMPEML-ADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-N---------------AR 88 (434)
T ss_pred HHHHHHHHHHHHhhhhHHHhhHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-C---------------Cc
Confidence 3344444444444445556666665 56999999999999999999999999999999998 9 99
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHH
Q 041588 123 RTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKE 202 (540)
Q Consensus 123 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~ 202 (540)
+++.++.++..++.+++..+ .+...+++.+++.+++.|...+...+++.|++|+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~--- 144 (434)
T PRK11663 89 YFMGIGLIATGIINILFGFS---------------------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE--- 144 (434)
T ss_pred hhHHHHHHHHHHHHHHHHHH---------------------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH---
Confidence 99999999999998888776 346677778888899988888888999999998876
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHH
Q 041588 203 AIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSII 253 (540)
Q Consensus 203 ~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i 253 (540)
|+.++++++.+.++|+.++|.+++++.+..||++.|++.++..++..+
T Consensus 145 ---rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~ 192 (434)
T PRK11663 145 ---RGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGL 192 (434)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887665544433
No 20
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.79 E-value=8.7e-17 Score=170.30 Aligned_cols=179 Identities=12% Similarity=0.079 Sum_probs=144.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhh
Q 041588 38 GWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFK 117 (540)
Q Consensus 38 ~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~ 117 (540)
+|+..+.+.+..+++..-...+.. ....+.+++|++..+.+++.+.+..+..++.+++|+++||+ |
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~-~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G------------ 71 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGF-AGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-G------------ 71 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHH-HHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-C------------
Confidence 345545555544444444444433 34478899999999999999999999999999999999998 9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588 118 LQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE 197 (540)
Q Consensus 118 ~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~ 197 (540)
||+++.++.++..++.++.+++ .+...+++++++.|++.++..|....+.+|.+|+
T Consensus 72 ---~r~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~ 127 (412)
T TIGR02332 72 ---ARRWIAGIMVLWGIASTATMFA---------------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPA 127 (412)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHh---------------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCH
Confidence 9999999999999999988876 2467788999999999999988888889999998
Q ss_pred CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh------ccCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588 198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQE------QKGWSVGFGIPTAFTICSIIIVAAGFP 260 (540)
Q Consensus 198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~------~~g~~~~f~i~~~~~~~~~i~~~~~~~ 260 (540)
++ |+...++++.+.++|..+++.+++++.+ ..|||+.|++.++..++..++..+..+
T Consensus 128 ~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~ 190 (412)
T TIGR02332 128 YF------RARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLD 190 (412)
T ss_pred HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccC
Confidence 76 8999999999999999999999998864 369999999877666554444444333
No 21
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.79 E-value=1.2e-16 Score=167.45 Aligned_cols=175 Identities=15% Similarity=0.198 Sum_probs=148.8
Q ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhh
Q 041588 34 RTTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVH 113 (540)
Q Consensus 34 ~~~~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~ 113 (540)
..+.+|+.+....+..+...+..+.+....+ .+.+++|++..+.+.+.+.+.+...++.++.|+++||+ |
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g-------- 75 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLA-EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-G-------- 75 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-c--------
Confidence 3456667777778888888888877766665 45778999999999999999999999999999999998 9
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhc
Q 041588 114 AIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGAD 193 (540)
Q Consensus 114 ~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d 193 (540)
||++++++.++..++.+++.++ .+...+++++++.|++.+...+...++..|
T Consensus 76 -------~r~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~ 127 (405)
T TIGR00891 76 -------RRLPMVTSIVLFSAGTLACGFA---------------------PGYITMFIARLVIGIGMGGEYGSSAAYVIE 127 (405)
T ss_pred -------cHHHHHHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 9999999999888888887765 246778889999999999999999999999
Q ss_pred cCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC--cchhhhHhHHHHHHHH
Q 041588 194 QYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG--WSVGFGIPTAFTICSI 252 (540)
Q Consensus 194 ~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g--~~~~f~i~~~~~~~~~ 252 (540)
.+|+++ |+.+.++++.+.++|..+++.+++.+.+..+ |++.|.+.++..++.+
T Consensus 128 ~~~~~~------~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~ 182 (405)
T TIGR00891 128 SWPKHL------RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL 182 (405)
T ss_pred hCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 998876 8999999999999999999999999887766 9999987655444443
No 22
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.79 E-value=5.1e-17 Score=172.09 Aligned_cols=175 Identities=13% Similarity=0.090 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccc
Q 041588 42 SPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGR 121 (540)
Q Consensus 42 ~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r 121 (540)
+..++...++..++.......+|.+.. +++.+..+.+++.+.......++.+++|+++||+ | |
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g---------------~ 81 (417)
T PRK10489 19 FRAVFIARFISIFGLGLLGVAVPVQIQ-MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-D---------------R 81 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-C---------------C
Confidence 344555567777776666677777764 5778999999999999999999999999999998 9 9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChH
Q 041588 122 FRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEK 201 (540)
Q Consensus 122 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~ 201 (540)
|+++.++..+..++.+.+....... ..+...+++.+++.+++.+...++..++..|.+|+++
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-- 143 (417)
T PRK10489 82 KKLILLARGTCGLGFIGLALNAFLP----------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN-- 143 (417)
T ss_pred ceEEEehHHHHHHHHHHHHHHHHcC----------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH--
Confidence 9999998888777776655421111 1245667778888888888777888888899988765
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHH
Q 041588 202 EAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIV 255 (540)
Q Consensus 202 ~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~ 255 (540)
|+++.++.+.+.++|..+||.+++++.+..||++.|++.++..+++.+..
T Consensus 144 ----~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 193 (417)
T PRK10489 144 ----LMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPL 193 (417)
T ss_pred ----HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999988899999988766665554443
No 23
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.79 E-value=3.9e-16 Score=164.38 Aligned_cols=175 Identities=15% Similarity=0.167 Sum_probs=147.7
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhh
Q 041588 35 TTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHA 114 (540)
Q Consensus 35 ~~~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~ 114 (540)
++..|+....+.+..++....-|.....+|.+ .+++|++..+.+...+.+.....++.++.|+++||+ |
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g--------- 83 (394)
T PRK10213 15 TRPNWSAVFSVAFCVACLIIVEFLPVSLLTPM-AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-D--------- 83 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-C---------
Confidence 34466666666666566666666666667664 568999999999999999999999999999999998 9
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhcc
Q 041588 115 IFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQ 194 (540)
Q Consensus 115 ~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~ 194 (540)
|||++..+.++..++.++...+ .+.+.+++.+++.|++.+...+...++..|.
T Consensus 84 ------rr~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 136 (394)
T PRK10213 84 ------RRYVVILFAVLLTLSCLLVSFA---------------------NSFSLLLIGRACLGLALGGFWAMSASLTMRL 136 (394)
T ss_pred ------cHHHHHHHHHHHHHHHHHHHHH---------------------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999988887765 3578899999999999999999999999999
Q ss_pred CCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHH
Q 041588 195 YDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSII 253 (540)
Q Consensus 195 ~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i 253 (540)
+|+++ |+.+.++...+.++|..++|.+++++.+..||++.|++.++..++..+
T Consensus 137 ~~~~~------~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l 189 (394)
T PRK10213 137 VPPRT------VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIF 189 (394)
T ss_pred cCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 98876 899999999999999999999999999999999999887665544433
No 24
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.78 E-value=1.7e-16 Score=161.98 Aligned_cols=171 Identities=18% Similarity=0.265 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccch
Q 041588 43 PFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRF 122 (540)
Q Consensus 43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~ 122 (540)
+.+....+.....++...+.++.|.. ++|.+..+.+...+.......++.++.|+++||+ | ||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g---------------~r 64 (352)
T cd06174 2 LLLFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-G---------------RR 64 (352)
T ss_pred HHHHHHHHHHHHhhhhhHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-C---------------Cc
Confidence 34566777888888888888888875 5799999999999999999999999999999998 9 99
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHH
Q 041588 123 RTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKE 202 (540)
Q Consensus 123 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~ 202 (540)
|.+.++.++..++.+.+... .+...+++++.+.+++.+...+...++..|.+|+++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--- 120 (352)
T cd06174 65 RVLLLGLLLFALGSLLLAFA---------------------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE--- 120 (352)
T ss_pred hhhHHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc---
Confidence 99999999999998888776 246778889999999999999999999999999876
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588 203 AIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAA 257 (540)
Q Consensus 203 ~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~ 257 (540)
|++.+++.+...++|..++|.+++.+.+..+|+..|++.++..+++.+....
T Consensus 121 ---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (352)
T cd06174 121 ---RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLF 172 (352)
T ss_pred ---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999989999999887776666555433
No 25
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.78 E-value=1.4e-17 Score=170.92 Aligned_cols=170 Identities=19% Similarity=0.329 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHH
Q 041588 46 IVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTL 125 (540)
Q Consensus 46 ~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i 125 (540)
++..++..+........++.++.+++|.+..+.+++.+.+.....++.+++|+++||+ | |||++
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g---------------~r~~l 65 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-G---------------RRRVL 65 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-----------------HHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C---------------CeeeE
Confidence 4556677777777777887788899999999999999999999999999999999998 9 99999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHh
Q 041588 126 VVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQ 205 (540)
Q Consensus 126 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~ 205 (540)
.++.++..++.++..++. +.+.+++++++.|++.+...++..++..|.+|+++
T Consensus 66 ~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------ 118 (352)
T PF07690_consen 66 IIGLLLFALGSLLLAFAS---------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------ 118 (352)
T ss_dssp HHHHHHHHHHHHHHHHHC---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------
T ss_pred eehhhhhhhHHHHhhhhh---------------------hHHHHhhhccccccccccccccccccccccchhhh------
Confidence 999999999855555541 34578899999999999999999999999999977
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588 206 KYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG 258 (540)
Q Consensus 206 r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~ 258 (540)
|+..+++.+.+.++|..++|.+++++.+..||++.|++.++..+++.++....
T Consensus 119 ~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~ 171 (352)
T PF07690_consen 119 RGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILF 171 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCC
T ss_pred hhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhh
Confidence 99999999999999999999999999988999999999888877776654333
No 26
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.78 E-value=5.7e-16 Score=163.43 Aligned_cols=174 Identities=16% Similarity=0.115 Sum_probs=138.1
Q ss_pred chHHHHHHHHHHHHHHHH---HHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhh
Q 041588 40 KASPFIIVNEVAERLAFF---AIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIF 116 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y---~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~ 116 (540)
+..+.++...+.+...++ .+.+.++. +.+++|.+..+.+...+.+.++..++.++.|+++||+ |
T Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g----------- 76 (406)
T PRK15402 10 QALLFPLCLVLFEFATYIANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-G----------- 76 (406)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-----------
Confidence 444444444444444343 34444444 4578999999999999999999999999999999998 9
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588 117 KLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD 196 (540)
Q Consensus 117 ~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~ 196 (540)
|||++.++..+..++.+....+ .+.+.+++.+++.|++.+...+...+...|.+|
T Consensus 77 ----~r~~l~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~ 131 (406)
T PRK15402 77 ----RRPVMLAGVAFFILTCLAILLA---------------------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFE 131 (406)
T ss_pred ----ChHHHHHHHHHHHHHHHHHHHH---------------------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhC
Confidence 9999999998888888877765 246677888999999988888888888999998
Q ss_pred CCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588 197 EADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAA 257 (540)
Q Consensus 197 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~ 257 (540)
+++ |.+..++.+....+|..++|.+++++.++.||++.|++.++..+++.+....
T Consensus 132 ~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~ 186 (406)
T PRK15402 132 EAD------AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWR 186 (406)
T ss_pred hhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH
Confidence 876 7778888888888999999999999999899999998877776665554433
No 27
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.78 E-value=3.4e-16 Score=163.17 Aligned_cols=162 Identities=19% Similarity=0.161 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHH
Q 041588 52 ERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCI 131 (540)
Q Consensus 52 ~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~ 131 (540)
+..++....+.+|. +.+++|++..+.+.+.+.+..++.++.+++|+++||+ | ||+++..+...
T Consensus 3 ~~~~~~~~~~~lp~-i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-g---------------rr~~~~~~~~~ 65 (368)
T TIGR00903 3 SQAIWVTFSPVLSL-VAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-F---------------KRWFLFGSLAT 65 (368)
T ss_pred hhHHHHHHHhhHHH-HHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c---------------chHHHHHHHHH
Confidence 34445545555554 5678999999999999999999999999999999998 9 99987655544
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHH
Q 041588 132 YSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFN 211 (540)
Q Consensus 132 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~ 211 (540)
...+....... .+...++++|++.|+|.+.. .+..+..+|.+|+++ |++..+
T Consensus 66 ~~~~~~~~~~~---------------------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~ 117 (368)
T TIGR00903 66 FAAAAGRLLDP---------------------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVIS 117 (368)
T ss_pred HHHHHHHHHHh---------------------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHH
Confidence 44443222211 24678999999999999864 444555689998765 999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588 212 WFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG 258 (540)
Q Consensus 212 ~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~ 258 (540)
+.+.+.++|..+++.+++++.++.|||..|++.++..++..+++...
T Consensus 118 ~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~ 164 (368)
T TIGR00903 118 LLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAA 164 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988666655554444443
No 28
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.78 E-value=1.4e-17 Score=177.14 Aligned_cols=351 Identities=17% Similarity=0.187 Sum_probs=241.1
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 041588 70 EMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLR 149 (540)
Q Consensus 70 ~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 149 (540)
+++++..+-+.+.+.+..++.++++.+|+++||+ | -|+++..+.++.++++++.+++..
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G---------------~r~v~~~~~~~sa~~t~l~P~aa~----- 125 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-G---------------ARRVFFISGLISALLTLLTPLAAS----- 125 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-C---------------chHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 5788999999999999999999999999999998 9 999999999999999999999853
Q ss_pred CCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041588 150 PPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLV 229 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~ 229 (540)
.....+++.|+++|++.|...|+...+.+.+.|+++ |+++.++.+.+..+|.+++..++|
T Consensus 126 --------------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg 185 (466)
T KOG2532|consen 126 --------------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSG 185 (466)
T ss_pred --------------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHH
Confidence 223467899999999999999999999999999988 999999999999999999999999
Q ss_pred hhhhc-cCcchhhhHhHHHHHHHHHHHHhcCccccccCCCCChHHHHHHHHHHHHHhhccCccccCccchhhhccccccc
Q 041588 230 YIQEQ-KGWSVGFGIPTAFTICSIIIVAAGFPYYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDDLYEVTTKESDI 308 (540)
Q Consensus 230 ~l~~~-~g~~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (540)
++.+. .||+..|++.+++.++..+++.....+ +|+.++..+ ++|.
T Consensus 186 ~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d----~P~~h~~is------------------~~El------------ 231 (466)
T KOG2532|consen 186 LLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD----SPSKHPNIS------------------EKEL------------ 231 (466)
T ss_pred HHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC----CcccCCCCC------------------HHHH------------
Confidence 99988 999999999888766665555443321 233222100 0000
Q ss_pred cccccccCCCchhhhhhhhhccCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhccC
Q 041588 309 FGARKLSHSSQFRFLDKAAVITDPETVRKDRWRLCTLTQVEELKSFIRILPIWASTLDLAISFAQLSTFFLSQAAVMDRN 388 (540)
Q Consensus 309 ~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~s~~~~q~~~~~~~ 388 (540)
..+++.+.....+....-| .|++++-.|+|+..+..+.-..........+...|+..
T Consensus 232 ------------~~I~~~k~~~~~~~~~~vP-----------~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~V 288 (466)
T KOG2532|consen 232 ------------KYIEKGKSEAHVKKKPPVP-----------YKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEV 288 (466)
T ss_pred ------------HHHHhcccccccCCCCCCC-----------HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 0111111000000000112 45556666777666555544444444444444555533
Q ss_pred CCCCcee-cCCCccchhHHHHHHHHHhhhhhHHhHhhhhcCCCC-----cccc-------------------cchhHHHH
Q 041588 389 LGSNFTI-PTGCVPIFSAINALILVPIYEKVIVPILRKLTGQTQ-----CDVK-------------------TILSHLWH 443 (540)
Q Consensus 389 ~~~g~~i-~~~~~~~~n~i~iii~~p~~~~~~~p~~~r~~~~~~-----l~~~-------------------~~~s~~~~ 443 (540)
+ ++.+ ..+.+.+++.+...+...+.+.+.|.+.+| ..... +... ...++..+
T Consensus 289 L--~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~-~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l 365 (466)
T KOG2532|consen 289 L--GFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFR-ILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILL 365 (466)
T ss_pred h--CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHH
Confidence 3 2333 457788888888888888888877777665 33222 1000 00122222
Q ss_pred -HHHH---HHhhhhHHHHHhhhccccchhhHhHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccCcCCCCchhHHHHHHH
Q 041588 444 -SAEV---FTYVGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDLNMSKLDYFYWIL 519 (540)
Q Consensus 444 -~~e~---~~~~~~~~~~~~~aP~~~r~~~~~~~~~~~~ig~~l~~~l~~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~l 519 (540)
++.. +...+.+--..+.+| ++-+..+|+.+....+...++|.+++.+.+ . ++.++| .++|++.
T Consensus 366 ~~~~~~~g~~~~Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~-~t~~eW----------~~VF~i~ 432 (466)
T KOG2532|consen 366 TIAIGLSGFNISGFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGIIVT-D-NTREEW----------RIVFLIA 432 (466)
T ss_pred HHHHHHcccchhhhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheeeEeC-C-CCHHHH----------HHHHHHH
Confidence 3333 333333334444477 888999999999999999999999987653 1 112234 4789999
Q ss_pred HHHHHHHHHHHHHHh
Q 041588 520 AGINGLNFFVYFWVA 534 (540)
Q Consensus 520 a~l~~~~~~~y~~~~ 534 (540)
|++.++..++|.+++
T Consensus 433 a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 433 AGILIVGNIIFLFFG 447 (466)
T ss_pred HHHHHHhchheeEee
Confidence 999999888887764
No 29
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.78 E-value=2.9e-16 Score=163.11 Aligned_cols=172 Identities=15% Similarity=0.136 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHH
Q 041588 46 IVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTL 125 (540)
Q Consensus 46 ~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i 125 (540)
++..++..+++....+.++.|+.+++|.+..+.+.+.+.+.+...+..++.|+++||+ | |||.+
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g---------------~r~~~ 66 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-G---------------DRKGL 66 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-C---------------CchHH
Confidence 4456777888888899999999999999999999999999999999999999999998 9 99887
Q ss_pred HHHH-HHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHH
Q 041588 126 VVFS-CIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAI 204 (540)
Q Consensus 126 ~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~ 204 (540)
++.. .+..++.++...+ .+...+++.+.+.+.+.+...|...++..|..+++.
T Consensus 67 ~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~----- 120 (375)
T TIGR00899 67 ILFCCLLAALACLLFAWN---------------------RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG----- 120 (375)
T ss_pred HHHHHHHHHHHHHHHHhc---------------------chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc-----
Confidence 6544 4445555555544 235566667777777766677777777777766543
Q ss_pred hhhh--hHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588 205 QKYV--FFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFP 260 (540)
Q Consensus 205 ~r~~--~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~ 260 (540)
|.. ..++...+.++|..++|.+++++.+..||++.|++.++..++..+..+...|
T Consensus 121 -~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 177 (375)
T TIGR00899 121 -REAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLP 177 (375)
T ss_pred -hhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 333 3577778889999999999999999899999999887776665555444333
No 30
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.78 E-value=1.1e-15 Score=160.82 Aligned_cols=180 Identities=13% Similarity=0.126 Sum_probs=127.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHH-HHHHHHHHHHHHHHhhhhcCCCcchhhhhhhh
Q 041588 39 WKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDW-IGAAYVLTILGAFLADAYLGQPALKHVHAIFK 117 (540)
Q Consensus 39 ~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~-~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~ 117 (540)
.+..+..++..++.+++...+.+.++.|+.+++|.|.++.+++.+.. .....++++++|+ +||+ |
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g------------ 79 (393)
T PRK15011 14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-G------------ 79 (393)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-c------------
Confidence 45668888889999999999999999999999999999999987765 4455566777777 9998 9
Q ss_pred cccchHHHHH-HHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588 118 LQGRFRTLVV-FSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD 196 (540)
Q Consensus 118 ~~~r~~~i~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~ 196 (540)
|||.+++ +.++..++..++.++ .+...+++...+.+...+...|...++..|..+
T Consensus 80 ---~r~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (393)
T PRK15011 80 ---DRKSLIVFCCLLGVLACTLFAWN---------------------RNYFVLLFVGVFLSSFGSTANPQMFALAREHAD 135 (393)
T ss_pred ---chhHHHHHHHHHHHHHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 9887654 445555665555554 234444333333333334556677777777665
Q ss_pred CCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588 197 EADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFP 260 (540)
Q Consensus 197 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~ 260 (540)
+++. ..+...++.+.+.++|..++|.+++++.++.||+..|++.++..++..+..+...|
T Consensus 136 ~~~~----~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 195 (393)
T PRK15011 136 KTGR----EAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLP 195 (393)
T ss_pred hccc----hHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4430 02334467888999999999999999999999999998877766555555444333
No 31
>TIGR00895 2A0115 benzoate transport.
Probab=99.77 E-value=3.2e-16 Score=163.33 Aligned_cols=175 Identities=16% Similarity=0.157 Sum_probs=140.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhc
Q 041588 39 WKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKL 118 (540)
Q Consensus 39 ~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~ 118 (540)
++.....++..+.....++.... ...++.+++|.+..+.+.+.+....+..++.+++|+++||+ |
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g------------- 80 (398)
T TIGR00895 16 WRAIILSFLIMLMDGYDLAAMGF-AAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-G------------- 80 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-h-------------
Confidence 34444444444444444444443 34456678999999999999999999999999999999998 9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588 119 QGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA 198 (540)
Q Consensus 119 ~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~ 198 (540)
||+++.++.++..++.+++... .+...+++.+++.|++.+...+...++.+|.+|++
T Consensus 81 --~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 137 (398)
T TIGR00895 81 --RKRVLLWSILLFSVFTLLCALA---------------------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKR 137 (398)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHc---------------------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHH
Confidence 9999999998888888777765 24567788899999999999999999999999877
Q ss_pred ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588 199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAA 257 (540)
Q Consensus 199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~ 257 (540)
+ |+..+++++.+.++|..++|.+++++.+..||+..|++.++..++..++...
T Consensus 138 ~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 190 (398)
T TIGR00895 138 F------RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMR 190 (398)
T ss_pred h------hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHH
Confidence 6 8999999999999999999999999999999999998876554444444333
No 32
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.77 E-value=4.7e-16 Score=162.78 Aligned_cols=155 Identities=14% Similarity=0.117 Sum_probs=135.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
|.++.++...++...++..+.+.+|.|+. ++|.|..+++++.+.+.++..++.++.|+++||+ |
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g-------------- 69 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-G-------------- 69 (381)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-H--------------
Confidence 56788889999999999999999999987 6899999999999999999999999999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
||+++..+.++..++....+.+ .+.+.+++++++.|++.+...+...+...|..++++
T Consensus 70 -~k~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~ 127 (381)
T PRK03633 70 -FNRSYYLASLIFAAGCAGLGLM---------------------VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN 127 (381)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999988887766 346778889999999999888877777778877655
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcc
Q 041588 200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWS 238 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~ 238 (540)
|++.+++++.+.++|..++|.+++++.+...+.
T Consensus 128 ------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 160 (381)
T PRK03633 128 ------RGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSV 160 (381)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence 889999999999999999999999987754333
No 33
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.77 E-value=6.3e-16 Score=165.70 Aligned_cols=173 Identities=12% Similarity=0.013 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 43 PFIIVNEVAERLAFFAI---AVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 43 ~~i~~~~~~~~~~~y~~---~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
|.++...++....+|.. .+....|+.++ |++..+.++..+.+.+...++.+++|+++||+ |
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g-------------- 91 (452)
T PRK11273 28 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-N-------------- 91 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-C--------------
Confidence 33344444444444433 22334467777 99999999999999999999999999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
||+++.++.++..++.+++.+... ...+...+++.+++.|++.|...+.......|++|+++
T Consensus 92 -~k~~l~~~~~~~~i~~~~~~~~~~-----------------~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~ 153 (452)
T PRK11273 92 -PRVFLPAGLILAAAVMLFMGFVPW-----------------ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE 153 (452)
T ss_pred -CchhHHHHHHHHHHHHHHHHhhhc-----------------ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH
Confidence 999999999998888887776521 01245667788889999999888888888899998876
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHH-HHHHHHHhhhhccCcchhhhHhHHHHHHHHHHH
Q 041588 200 EKEAIQKYVFFNWFFFAINMGAI-FGITVLVYIQEQKGWSVGFGIPTAFTICSIIIV 255 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~~-i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~ 255 (540)
|+.++++++.+.++|+. .+|.++..+....||++.|++.++..++..++.
T Consensus 154 ------r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~ 204 (452)
T PRK11273 154 ------RGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFA 204 (452)
T ss_pred ------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999875 455544334344589999998776655544443
No 34
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.77 E-value=5.6e-16 Score=162.29 Aligned_cols=174 Identities=14% Similarity=0.169 Sum_probs=148.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+.++.+.+..+......+...+.+|.+ .+++|.+..+.+...+.+..+..++.++.|+++||+ |
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g-------------- 66 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTEL-AHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-S-------------- 66 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHH-HHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-c--------------
Confidence 566777788888888888777877664 568999999999999999999999999999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
||+++.++..+..++.++++.+ .+.+.+++.+++.|++.+...+...++..|.+|+++
T Consensus 67 -~r~~~~~~~~~~~~~~~l~~~~---------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~ 124 (382)
T PRK10091 67 -LKHILLFLVALCVIGNAMFTLS---------------------SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK 124 (382)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHh---------------------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH
Confidence 9999999999999999888776 357888899999999999887888888889887765
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588 200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAA 257 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~ 257 (540)
|+..++++..+.++|..++|.+++++.+..||++.|++.++..++..+....
T Consensus 125 ------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~ 176 (382)
T PRK10091 125 ------VTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYF 176 (382)
T ss_pred ------hhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999889999999999999999999899999999877765555444333
No 35
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.77 E-value=6.2e-16 Score=161.06 Aligned_cols=176 Identities=13% Similarity=0.094 Sum_probs=145.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+..+.+.+..+....+.....+.+|. +.+++|.+..+.+.+.+.+..+..++.++.|+++||+ |
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g-------------- 68 (385)
T TIGR00710 5 AFALLLGCLSILGPLGIDMYLPAFPE-IAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-G-------------- 68 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-C--------------
Confidence 44445555555555665555555554 4678999999999999999999999999999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
||+++.++.++..++.+.+... .+...+++.+++.+++.+...+...++..|.+|+++
T Consensus 69 -~r~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 126 (385)
T TIGR00710 69 -RRPVLLLGLFIFALSSLGLALS---------------------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE 126 (385)
T ss_pred -ChHHHHHHHHHHHHHHHHHHHH---------------------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH
Confidence 9999999999998888887766 246678888999999999999999999999998766
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcC
Q 041588 200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGF 259 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~ 259 (540)
|++.+++.+...++|..++|.+++++.+..||+..|++.++..++..+......
T Consensus 127 ------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (385)
T TIGR00710 127 ------LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFIL 180 (385)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 899999999999999999999999999989999999887776666555544433
No 36
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.77 E-value=1.9e-16 Score=163.66 Aligned_cols=157 Identities=12% Similarity=0.151 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHH
Q 041588 56 FFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVG 135 (540)
Q Consensus 56 ~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~ 135 (540)
.|.... +..++.+++|++..+.+.+.+.+.++..++.++.|+++||+ | ||+++.++.++..++
T Consensus 19 ~~~~~~-~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G---------------~r~~~~~~~~~~~~~ 81 (377)
T TIGR00890 19 VYTWTL-LAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-G---------------PRAVAMLGGILYGLG 81 (377)
T ss_pred Hhhhhh-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-C---------------ccchhHHhHHHHHHH
Confidence 444433 45667789999999999999999999999999999999998 9 999999999999999
Q ss_pred HHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHH
Q 041588 136 MVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFF 215 (540)
Q Consensus 136 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~ 215 (540)
.++...+ .+...+++++.+.|++.+...+.......+.+|+ + |+...+++..
T Consensus 82 ~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~ 133 (377)
T TIGR00890 82 FTFYAIA---------------------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-K------RGLASGIIIG 133 (377)
T ss_pred HHHHHHH---------------------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-c------cHHHHHHHHH
Confidence 9888876 3577788889999999887777777777788764 3 7889999999
Q ss_pred HHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588 216 AINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAA 257 (540)
Q Consensus 216 ~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~ 257 (540)
+.++|..+++.+.+.+.+..||++.|++.++..++..+..+.
T Consensus 134 ~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 175 (377)
T TIGR00890 134 GYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAF 175 (377)
T ss_pred hcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 999998887777777777789999999877766655554433
No 37
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.76 E-value=1.8e-15 Score=155.51 Aligned_cols=181 Identities=15% Similarity=0.201 Sum_probs=164.3
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhh
Q 041588 36 TGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAI 115 (540)
Q Consensus 36 ~~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~ 115 (540)
+..|..++.+.+..|+....=+.....+|. +.+++|.|..++|..++.|..+..++.++-..+.||+ .
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~-iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~---------- 76 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGLLPP-IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-E---------- 76 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhchHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-c----------
Confidence 334567788888888888888888877776 5678999999999999999999999999999999998 9
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccC
Q 041588 116 FKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQY 195 (540)
Q Consensus 116 ~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~ 195 (540)
||++++....+++++.++.+++ +++..++++|++.++..|.+.+...+..+|+.
T Consensus 77 -----Rr~lLl~~l~lFi~~n~l~alA---------------------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lv 130 (394)
T COG2814 77 -----RRRLLLGLLALFIVSNLLSALA---------------------PSFAVLLLARALAGLAHGVFWSIAAALAARLV 130 (394)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999998 46899999999999999999999999999999
Q ss_pred CCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588 196 DEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFP 260 (540)
Q Consensus 196 ~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~ 260 (540)
|+++ |+++.++.+.+..++..+|..++.++.|.+|||..|++.+++.+++++..+...|
T Consensus 131 pp~~------~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 131 PPGK------RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred Cccc------hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9987 9999999999999999999999999999999999999888887777777766666
No 38
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.76 E-value=3.3e-16 Score=168.37 Aligned_cols=147 Identities=11% Similarity=0.124 Sum_probs=127.2
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 041588 70 EMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLR 149 (540)
Q Consensus 70 ~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 149 (540)
++|++..+.+.+.+.+..++.++.+++|+++||+ | ||+++.++.++..++.++...+..
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g---------------~r~~l~~~~~~~~~~~~~~~~~~~----- 128 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-V---------------FKWSIGIGMFLSSVISIVIPWAAG----- 128 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-C---------------cchhhHHHHHHHHHHHHHHHHHHH-----
Confidence 6889999999999999999999999999999998 9 999999999888888777654421
Q ss_pred CCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041588 150 PPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLV 229 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~ 229 (540)
.+...+++.+++.|++.+...|....+.+|.+|+++ |+++.++++.+.++|..++|.+++
T Consensus 129 --------------~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~ 188 (465)
T TIGR00894 129 --------------GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISG 188 (465)
T ss_pred --------------cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 124568889999999999999999999999999877 999999999999999999999999
Q ss_pred hhhhc-cCcchhhhHhHHHHHHHHHHHHh
Q 041588 230 YIQEQ-KGWSVGFGIPTAFTICSIIIVAA 257 (540)
Q Consensus 230 ~l~~~-~g~~~~f~i~~~~~~~~~i~~~~ 257 (540)
++.+. .||+..|++.++..++..+++..
T Consensus 189 ~l~~~~~gw~~~f~i~~~~~~~~~~~~~~ 217 (465)
T TIGR00894 189 WLCESWGGWPMIFYVFGIVGCAWSLLWFV 217 (465)
T ss_pred HHHhccCCCCeehhhhhHHHHHHHHHHHH
Confidence 99988 49999999887766555444433
No 39
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.76 E-value=6.6e-16 Score=163.83 Aligned_cols=182 Identities=7% Similarity=-0.149 Sum_probs=123.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+.+|.+.+..++...+++.+.++++.|+.+++|++..+.+.+.+.+.+...+++++.|+++||+ |
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g-------------- 74 (420)
T PRK09528 10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-G-------------- 74 (420)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------------
Confidence 5678888888888888888999999999999999999999999999999999999999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
|||+++++..+..++...+......+. .....+.+..+.++..+...+...+...++.++.
T Consensus 75 -~r~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 135 (420)
T PRK09528 75 -LKKHLLWIISGLLVLFGPFFIYVFAPL-----------------LQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV- 135 (420)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH-
Confidence 999998877665554432221100000 0001112222223322322222222222332211
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcC
Q 041588 200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGF 259 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~ 259 (540)
.++++..++......++|..++|.+++++.+ .+|+..|++.++..++++++.+..+
T Consensus 136 ---~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~ 191 (420)
T PRK09528 136 ---SRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAK 191 (420)
T ss_pred ---HhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhccc
Confidence 1125667788888889999999999999976 4899999887766666555554433
No 40
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.76 E-value=6.5e-16 Score=163.84 Aligned_cols=165 Identities=16% Similarity=0.155 Sum_probs=139.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhh
Q 041588 38 GWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFK 117 (540)
Q Consensus 38 ~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~ 117 (540)
+++......+..+...+.++... ++..++.+++|.+..+.+...+.+.++..++.+++|+++||+ |
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g------------ 81 (426)
T PRK12307 16 QKNALFSAWLGYVFDGFDFMLIF-YIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-G------------ 81 (426)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C------------
Confidence 33444555555555555555443 344456789999999999999999999999999999999998 9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588 118 LQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE 197 (540)
Q Consensus 118 ~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~ 197 (540)
||+++.++.++..++.+...++ .+...+++++++.|++.|...+...++..|.+|+
T Consensus 82 ---~r~~l~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~ 137 (426)
T PRK12307 82 ---RKPLMMWSIVAYSVGTGLSGLA---------------------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPK 137 (426)
T ss_pred ---ChHHHHHHHHHHHHHHHHHHHH---------------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCH
Confidence 9999999999999998888776 3577888999999999999899999999999998
Q ss_pred CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHH
Q 041588 198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTA 246 (540)
Q Consensus 198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~ 246 (540)
++ |+++.+++..+.++|..+++.+.+++.+..||++.|++..+
T Consensus 138 ~~------r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~ 180 (426)
T PRK12307 138 HL------KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL 180 (426)
T ss_pred hH------hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence 76 88999999999999999999999999888999999987543
No 41
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.76 E-value=1.7e-16 Score=170.75 Aligned_cols=176 Identities=13% Similarity=0.027 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhc
Q 041588 42 SPFIIVNEVAERLAFFAIAV---NMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKL 118 (540)
Q Consensus 42 ~~~i~~~~~~~~~~~y~~~~---~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~ 118 (540)
.+.++...++.....|.... .....+.+++|++..+.+++.+.+..++.++.+++|+++||+ |
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g------------- 92 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-N------------- 92 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-C-------------
Confidence 34444444444444443322 223456789999999999999999999999999999999998 9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588 119 QGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA 198 (540)
Q Consensus 119 ~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~ 198 (540)
||+++.++.++..++...++..... ...+...+++.+++.|++.+...|+..++++|++|++
T Consensus 93 --~r~~l~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 154 (467)
T PRK09556 93 --TKQFLPFLLILSAICMLGFGASLGS----------------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRR 154 (467)
T ss_pred --ccchHHHHHHHHHHHHHHHHHHHhc----------------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCcc
Confidence 9999999988887777766653110 0135778889999999999998999999999999998
Q ss_pred ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhcc---CcchhhhHhHHHHHHHHHHH
Q 041588 199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQK---GWSVGFGIPTAFTICSIIIV 255 (540)
Q Consensus 199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~---g~~~~f~i~~~~~~~~~i~~ 255 (540)
+ |+.+++++..+.++|+.+++.+..++.+.. +|+..|.+.++..++..++.
T Consensus 155 ~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~ 208 (467)
T PRK09556 155 K------RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIG 208 (467)
T ss_pred c------eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHH
Confidence 7 999999999999999999999887776643 58888877666554443333
No 42
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.76 E-value=1.3e-15 Score=160.30 Aligned_cols=162 Identities=13% Similarity=0.161 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHH
Q 041588 45 IIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRT 124 (540)
Q Consensus 45 i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~ 124 (540)
..+..+..+..++.+.+.+|. +.+++|+|..+.+++.+.+..+..++.++.|+++||+ | ||++
T Consensus 14 ~~~~~~~~~~~~~~~~~~lp~-i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G---------------~r~~ 76 (393)
T PRK09705 14 LVLIGLNMRPLLTSVGPLLPQ-LRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-S---------------ERRS 76 (393)
T ss_pred HHHHHHHcchhhhccchhHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-C---------------chHH
Confidence 334444445555666666665 5678999999999999999999999999999999998 9 9999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHH
Q 041588 125 LVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAI 204 (540)
Q Consensus 125 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~ 204 (540)
+..+..++.++.++.+++ ++...+++++++.|+|.+...+...+++.|++| ++
T Consensus 77 l~~~~~l~~~~~~~~~~a---------------------~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~----- 129 (393)
T PRK09705 77 VAISLLLIAVGALMRELY---------------------PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR----- 129 (393)
T ss_pred HHHHHHHHHHHHHHHHHC---------------------cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc-----
Confidence 999999999999999887 246678899999999999988888899999887 44
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhcc-CcchhhhHhHHHHHHH
Q 041588 205 QKYVFFNWFFFAINMGAIFGITVLVYIQEQK-GWSVGFGIPTAFTICS 251 (540)
Q Consensus 205 ~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~-g~~~~f~i~~~~~~~~ 251 (540)
|+.+.+.+..+.++|..+++.+++++.++. +|+..+.+.++..++.
T Consensus 130 -~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~ 176 (393)
T PRK09705 130 -TPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVA 176 (393)
T ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 889999999999999999999999988875 7998876654444333
No 43
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.76 E-value=2.5e-15 Score=160.12 Aligned_cols=168 Identities=14% Similarity=0.243 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhcC---CChhHHHHHHHHH---HHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccc
Q 041588 47 VNEVAERLAFFAIAVNMTAYLVREMH---QSLPTAGTHVTDW---IGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQG 120 (540)
Q Consensus 47 ~~~~~~~~~~y~~~~~l~~yl~~~lg---~s~~~a~~~~~~~---~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~ 120 (540)
+..+++.+-+.. .+.+..++.++++ .+..+.+.....+ .++..++.+++|+++||+ |
T Consensus 29 ~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-G--------------- 91 (432)
T PRK10406 29 SGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-G--------------- 91 (432)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C---------------
Confidence 345555555444 4556667888874 4555433333333 444448899999999998 9
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCCh
Q 041588 121 RFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADE 200 (540)
Q Consensus 121 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~ 200 (540)
|||++.++.+++.++.++.+++.+.... .......+++.|+++|+|.|+..|...++++|.+|+++
T Consensus 92 rr~~l~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~- 157 (432)
T PRK10406 92 RKKSMLISVCMMCFGSLVIACLPGYETI-------------GTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR- 157 (432)
T ss_pred cHHHHHHHHHHHHHHHHHHhhcCCchhH-------------HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc-
Confidence 9999999999999999988776311000 00123468889999999999999999999999999877
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhh--------hccCcchhhhHhHHHHHH
Q 041588 201 KEAIQKYVFFNWFFFAINMGAIFGITVLVYIQ--------EQKGWSVGFGIPTAFTIC 250 (540)
Q Consensus 201 ~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~--------~~~g~~~~f~i~~~~~~~ 250 (540)
|+.+.++.+.+.+.|..+++.+...+. +..|||..|++.++..++
T Consensus 158 -----rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll 210 (432)
T PRK10406 158 -----KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVV 210 (432)
T ss_pred -----ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH
Confidence 888888888888888888877655543 257999999876665443
No 44
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.75 E-value=2.8e-15 Score=157.02 Aligned_cols=344 Identities=13% Similarity=0.048 Sum_probs=207.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccc
Q 041588 41 ASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQG 120 (540)
Q Consensus 41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~ 120 (540)
..+.+.+..++...++-...+++|.|+. ++|+|..+.+.+.+.+.....++.++.|.++||+ |
T Consensus 5 ~~~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~--------------- 67 (382)
T TIGR00902 5 PFRWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-N--------------- 67 (382)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C---------------
Confidence 4444556667777777777889999995 6899999999999999999999999999999998 8
Q ss_pred chHHHH----HHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588 121 RFRTLV----VFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD 196 (540)
Q Consensus 121 r~~~i~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~ 196 (540)
|++... ++..+..+ .+...+ ++.+.+++.+++.+.+.+...|...++..+. +
T Consensus 68 ~~~~~~~~~~~~~~l~~~--~~~~~~---------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~-~ 123 (382)
T TIGR00902 68 HIIIALRLLALASAIFAA--AFSAGA---------------------HNAWLLFIAIGLFALFFSAGMPIGDALANTW-Q 123 (382)
T ss_pred cHHHHHHHHHHHHHHHHH--HHHHhh---------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH-H
Confidence 754332 22222221 111112 2467777888888888888778777765432 1
Q ss_pred CCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCccccccCCCCChHHHHH
Q 041588 197 EADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQKPIGSSLTRFV 276 (540)
Q Consensus 197 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~ 276 (540)
+ +|+..++......++|..++|.+++++.++.||+..|++..+..++.++ .....++. +|+++.
T Consensus 124 -~------~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~---~~~~~~----- 187 (382)
T TIGR00902 124 -K------QFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLI-GFLIKPTI---PPKDAI----- 187 (382)
T ss_pred -H------HcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHcCCCC---CCCccc-----
Confidence 2 2788899999999999999999999999999999999876554332222 22222211 111000
Q ss_pred HHHHHHHHhhccCccccCccchhhhccccccccccccccCCCchhhhhhhhhccCcccccccccccccchhHHHHHHHHH
Q 041588 277 QVIVSYVRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHSSQFRFLDKAAVITDPETVRKDRWRLCTLTQVEELKSFIR 356 (540)
Q Consensus 277 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~ 356 (540)
++.+ . ... ..+.+ .-..|++
T Consensus 188 ----------------~~~~-----------------~-~~~-~~~~~-----------------------~l~~~~~-- 207 (382)
T TIGR00902 188 ----------------PEDE-----------------S-QGD-SAFIA-----------------------LLKNPMN-- 207 (382)
T ss_pred ----------------cccc-----------------c-ccc-hhHHH-----------------------HHcChHH--
Confidence 0000 0 000 00000 0001122
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHhhccCCCCCceecCCCccchhHHHHHHHHHhhhhhHHhHhhhhcCCCC-c---
Q 041588 357 ILPIWASTLDLAISFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKLTGQTQ-C--- 432 (540)
Q Consensus 357 ~l~~~~~~~~~~~~~~q~~s~~~~q~~~~~~~~~~g~~i~~~~~~~~n~i~iii~~p~~~~~~~p~~~r~~~~~~-l--- 432 (540)
+.+.+...+......+..+++..+-. |.... ....+.+..+..+..++..++.+++. +|.+ .++ +
T Consensus 208 -~~~l~~~~l~~~~~~~~~~~~~~~l~--~~g~s---~~~~g~l~~~~~~~~i~~~~~~~~l~----~r~g-~~~~l~~~ 276 (382)
T TIGR00902 208 -LRFLAAVCLIQGAHAAYYGFSAIYWQ--AAGIS---ASATGLLWGIGVLAEIIIFAFSNKLF----QNCS-ARDLLLIS 276 (382)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCC---HhHHHHHHHHHHHHHHHHHHHhHHHH----hhCC-HHHHHHHH
Confidence 22223333344555555554433222 21111 11123344455566666666666654 3332 112 1
Q ss_pred ----ccc----cc---------hhHHHHHHHHHHhhhhHHHHHhhhccccchhhHhHHH-HHhHHHHHHHHHHHHHHHhh
Q 041588 433 ----DVK----TI---------LSHLWHSAEVFTYVGQLEFFYNEATDGTRSISTAIFL-SEIGLGSCLSNALVKIIERA 494 (540)
Q Consensus 433 ----~~~----~~---------~s~~~~~~e~~~~~~~~~~~~~~aP~~~r~~~~~~~~-~~~~ig~~l~~~l~~~~~~~ 494 (540)
..+ .. ....+.+...+..+....++.+. |++.++.++|+++ ...++|..+++.+.+.+.+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~ 355 (382)
T TIGR00902 277 AIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPT 355 (382)
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000 00 11111177777888888889888 9999999999986 57789999999998887642
Q ss_pred cCCCCCCccCcCCCCchhHHHHHHHHHHHHHHHHH
Q 041588 495 TGGQEEGWLRNDLNMSKLDYFYWILAGINGLNFFV 529 (540)
Q Consensus 495 ~~~~~~~w~~~~~n~~~~~~~f~~la~l~~~~~~~ 529 (540)
. + . ..|++.+++.+++.++
T Consensus 356 ~--------------g-~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 356 L--------------G-A-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred c--------------c-H-HHHHHHHHHHHHHHHH
Confidence 2 1 1 4688888887766544
No 45
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.75 E-value=6.2e-15 Score=155.53 Aligned_cols=174 Identities=15% Similarity=0.116 Sum_probs=138.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhh
Q 041588 38 GWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFK 117 (540)
Q Consensus 38 ~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~ 117 (540)
-||.+....+..++...+.+....+++.|+ +++|.+..+++...+.+.....++.+++|+++||+ |
T Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g------------ 76 (402)
T TIGR00897 11 IPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-G------------ 76 (402)
T ss_pred CCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-C------------
Confidence 346777788888888888888888888888 56899999999999999999999999999999998 9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588 118 LQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE 197 (540)
Q Consensus 118 ~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~ 197 (540)
|||++..+..+..++.+++...... ..+...+++.+.+.|+|.+...+...+...+.+|+
T Consensus 77 ---~k~~l~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~ 136 (402)
T TIGR00897 77 ---PLKTMMIGLLLWCVGHAAFIVFGLG-----------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQ 136 (402)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHhcc-----------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCH
Confidence 9999999999888876655332110 02355667788888888877666677777888887
Q ss_pred CChHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHhhhhccCcchhhhHhHHHHHHH
Q 041588 198 ADEKEAIQKYVFFNWFFFAINMGA-IFGITVLVYIQEQKGWSVGFGIPTAFTICS 251 (540)
Q Consensus 198 ~~~~~~~~r~~~~~~~~~~~~iG~-~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~ 251 (540)
++ |+++.++++.+.++|. .++|.+++++.+..||+..++.......++
T Consensus 137 ~~------~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~ 185 (402)
T TIGR00897 137 DN------LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTG 185 (402)
T ss_pred HH------HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 66 9999999999999996 589999999988888766665544333333
No 46
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.75 E-value=8.8e-16 Score=166.54 Aligned_cols=180 Identities=16% Similarity=0.147 Sum_probs=146.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhc
Q 041588 39 WKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKL 118 (540)
Q Consensus 39 ~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~ 118 (540)
|..+..+++..+...+-.-.+...+|.. .+++|.+..+.+++.+.+..+..++.+++|+++||+ |
T Consensus 5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i-~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-G------------- 69 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDATVLHVAAPTL-SMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-G------------- 69 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-------------
Confidence 3444555666666666555566666665 578999999999999999999999999999999998 9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588 119 QGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA 198 (540)
Q Consensus 119 ~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~ 198 (540)
||++++++.++..++.++++.+ .+.+.+++++.++|+|.++..+...+.+.+.++++
T Consensus 70 --rk~~l~~~~~~~~~~~~~~~~a---------------------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~ 126 (495)
T PRK14995 70 --FKRLLMLGGTLFGLASLAAAFS---------------------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEE 126 (495)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHc---------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 9999999999999999998876 35788899999999999988888777777777432
Q ss_pred ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCcc
Q 041588 199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPY 261 (540)
Q Consensus 199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~ 261 (540)
+ +|+.+++++....++|..+||.+++++.++.||++.|++...+.++.+++.....|+
T Consensus 127 ~-----~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~ 184 (495)
T PRK14995 127 K-----QRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPR 184 (495)
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 2 289999999999999999999999999999999999998766665555554444443
No 47
>PRK03699 putative transporter; Provisional
Probab=99.74 E-value=5.8e-15 Score=155.29 Aligned_cols=174 Identities=9% Similarity=0.046 Sum_probs=142.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhh
Q 041588 37 GGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIF 116 (540)
Q Consensus 37 ~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~ 116 (540)
+++|..+...+..++.....+.+...+|. +.+++|+|..+.+.+.+.+.++..++.+++|+++||+ |
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g----------- 70 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-P----------- 70 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-----------
Confidence 44566677767777776766666666666 4578999999999999999999999999999999998 9
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588 117 KLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD 196 (540)
Q Consensus 117 ~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~ 196 (540)
|||++.++.++..++.+++.++ .+...+++.+.+.|++.|...+...+.+.|.+|
T Consensus 71 ----~r~~~~~~~~~~~i~~~l~~~~---------------------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~ 125 (394)
T PRK03699 71 ----LKRQLIFGFALMILAVAGLMFS---------------------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYE 125 (394)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHc---------------------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcc
Confidence 9999999998888888887765 246678888999999999888888899999998
Q ss_pred CCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh-ccCcchhhhHhHHHHHHHHHH
Q 041588 197 EADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQE-QKGWSVGFGIPTAFTICSIII 254 (540)
Q Consensus 197 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~-~~g~~~~f~i~~~~~~~~~i~ 254 (540)
+++ |+...+..+...++|+.++|.+.+++.+ ..||++.|.+.++..++..++
T Consensus 126 ~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 126 GKQ------RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred cch------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 765 8888888888889999999999888754 579999998766665544433
No 48
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.74 E-value=1.3e-15 Score=164.24 Aligned_cols=175 Identities=15% Similarity=0.212 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccc
Q 041588 42 SPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGR 121 (540)
Q Consensus 42 ~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r 121 (540)
...+++..+...+....+...+|. +.+++|.+..+.+++.+.+..+..++.+++|+++||+ | |
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g---------------~ 66 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIPT-IAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-G---------------T 66 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-C---------------c
Confidence 344455555555555555555554 5578999999999999999999999999999999998 9 9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChH
Q 041588 122 FRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEK 201 (540)
Q Consensus 122 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~ 201 (540)
|++++++.++..++.+++..+ .+...+++++++.|++.+...+...+++.|.+|+++
T Consensus 67 r~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-- 123 (485)
T TIGR00711 67 RRLFLISTFAFTLGSLLCGVA---------------------PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK-- 123 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhCc---------------------CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH--
Confidence 999999999999998887765 346778899999999999999999999999998776
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588 202 EAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFP 260 (540)
Q Consensus 202 ~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~ 260 (540)
|+.++++++.+.++|..++|.+++++.++.||++.|++.+...+++.+......+
T Consensus 124 ----r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~ 178 (485)
T TIGR00711 124 ----RGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILP 178 (485)
T ss_pred ----HHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcC
Confidence 8999999999999999999999999999999999999877666555555444433
No 49
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.74 E-value=5.9e-15 Score=155.33 Aligned_cols=165 Identities=15% Similarity=0.129 Sum_probs=135.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
|.++.+....++..++...+...++.. .+++|.+..+.+++.+.+...+.++.+++|+++||+ |
T Consensus 3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-g-------------- 66 (393)
T PRK11195 3 KGFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-P-------------- 66 (393)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-C--------------
Confidence 456777788888887666555555544 578999999999999999999999999999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
|||+++++.++..++.+.+.... + .++.++++|++.+...|+..+++.|.+|+++
T Consensus 67 -rr~vl~~~~~~~~~~~~~~~~~~---------------------~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~ 121 (393)
T PRK11195 67 -KGRVMFIANGIKLLGCLLMLFGI---------------------H---PLLAYGLVGIGAAAYSPAKYGILTELLPGEK 121 (393)
T ss_pred -CchhhHHHHHHHHHHHHHHHHHH---------------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 99999999999888877765541 1 2567889999999999999999999999876
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHH
Q 041588 200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSI 252 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~ 252 (540)
|+++.++.....++|..+||.++|++.+. .|+..+.+.+...+++.
T Consensus 122 ------~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~ 167 (393)
T PRK11195 122 ------LVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLAA 167 (393)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999885 36666665554444443
No 50
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.74 E-value=3.2e-15 Score=167.28 Aligned_cols=155 Identities=15% Similarity=0.123 Sum_probs=128.9
Q ss_pred HHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHH
Q 041588 60 AVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLL 139 (540)
Q Consensus 60 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l 139 (540)
...+..++.+++|++..+.+++.+++.++..++.+++|+++||+ | ||++++++.++.+++.++.
T Consensus 186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-G---------------RR~~lii~lil~~i~~ll~ 249 (742)
T TIGR01299 186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-G---------------RKQCLLICLSVNGFFAFFS 249 (742)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C---------------cHHHHHHHHHHHHHHHHHH
Confidence 34445566778999999999999999999999999999999998 9 9999999999888888887
Q ss_pred HHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHH
Q 041588 140 TVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINM 219 (540)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~i 219 (540)
+++ .+...+++++++.|+|.|+..+...++++|.+|++. |+..+++...+..+
T Consensus 250 afa---------------------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~i 302 (742)
T TIGR01299 250 SFV---------------------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMI 302 (742)
T ss_pred HHH---------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHH
Confidence 766 246788899999999999999999999999999876 89999999999999
Q ss_pred HHHHHHHHHHhhhhc-------------cCcchhhhHhHHHHHHHHHHHHh
Q 041588 220 GAIFGITVLVYIQEQ-------------KGWSVGFGIPTAFTICSIIIVAA 257 (540)
Q Consensus 220 G~~i~p~v~~~l~~~-------------~g~~~~f~i~~~~~~~~~i~~~~ 257 (540)
|+++++.++.++... .+|++.|++.++..++++++.++
T Consensus 303 G~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~ 353 (742)
T TIGR01299 303 GGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTF 353 (742)
T ss_pred HHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 999998877665543 35888887776665555544433
No 51
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.74 E-value=2.1e-16 Score=160.56 Aligned_cols=172 Identities=13% Similarity=0.083 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 43 PFIIVNEVAERLAFFAIAVN---MTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 43 ~~i~~~~~~~~~~~y~~~~~---l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+.++...++...+||.+.-+ ...++.++.++|.+|.|.+.+.+.+.+.++-.+.|.+|||. +
T Consensus 28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-n-------------- 92 (448)
T COG2271 28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-N-------------- 92 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-C--------------
Confidence 66778888888999988544 34678889999999999999999999999999999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
.|+.+.+++++..+..++++++. +...+.+..++.|..+|.-.|+....++.+|++++
T Consensus 93 -pr~fm~~gLilsai~nil~Gfs~---------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e 150 (448)
T COG2271 93 -PRYFMAFGLILSAIVNILFGFSP---------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE 150 (448)
T ss_pred -CceeehHHHHHHHHHHHHHhhhh---------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc
Confidence 99999999999999999999873 57778888889999999999999999999999998
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHH--HhhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588 200 EKEAIQKYVFFNWFFFAINMGAIFGITVL--VYIQEQKGWSVGFGIPTAFTICSIIIVAA 257 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~--~~l~~~~g~~~~f~i~~~~~~~~~i~~~~ 257 (540)
||+..++.+.+-|+|+++.|.+. +++.++.+|+.+|++++++.++..++.+.
T Consensus 151 ------RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~ 204 (448)
T COG2271 151 ------RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLF 204 (448)
T ss_pred ------cCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 99999999999999988876554444433
No 52
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.74 E-value=8.1e-15 Score=153.93 Aligned_cols=172 Identities=11% Similarity=0.098 Sum_probs=138.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhc
Q 041588 39 WKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKL 118 (540)
Q Consensus 39 ~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~ 118 (540)
+|..+.+....++.....+...+.+|.+ .+++|.|..+.+...+.+.....++.++.|+++||+ |
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~p~~~~i-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g------------- 71 (394)
T PRK11652 7 VNLLFMLVLLVAVGQMAQTIYVPAIADM-ARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-G------------- 71 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-C-------------
Confidence 4555555555556666655555555554 578999999999999999999999999999999998 9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588 119 QGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA 198 (540)
Q Consensus 119 ~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~ 198 (540)
|||++.++.++..++.+..... .+...+++.+++.|++.+...+....+..|.++++
T Consensus 72 --rr~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 128 (394)
T PRK11652 72 --RRPVILVGMSIFILGTLVALFA---------------------HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGT 128 (394)
T ss_pred --ChHHHHHHHHHHHHHHHHHHHH---------------------ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHH
Confidence 9999999998888888877665 24677888899999998877777777888888765
Q ss_pred ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHH
Q 041588 199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIII 254 (540)
Q Consensus 199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~ 254 (540)
+ ++...+++..+..+|..++|.+++++.+..||+..|++.++..++..++
T Consensus 129 ~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~ 178 (394)
T PRK11652 129 Q------LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFS 178 (394)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence 5 7888888999999999999999999999899999998876655544433
No 53
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.73 E-value=7.6e-16 Score=159.27 Aligned_cols=152 Identities=15% Similarity=0.091 Sum_probs=131.2
Q ss_pred HHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhc
Q 041588 64 TAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSG 143 (540)
Q Consensus 64 ~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~ 143 (540)
..++.+++|++..+.+.+.+.+.++..++.+++|+++||+ | ||++++++.++..++.+++..+
T Consensus 18 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g---------------~r~~~~~~~~~~~~~~~~~~~~- 80 (379)
T TIGR00881 18 MPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-N---------------PRVFLPIGLILCAIVNLFFGFS- 80 (379)
T ss_pred hHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-C---------------CeehhHHHHHHHHHHHHHHHHh-
Confidence 3467788999999999999999999999999999999998 9 9999999999999998888876
Q ss_pred ccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHH
Q 041588 144 SLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIF 223 (540)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i 223 (540)
.+.+.+++.+++.|++.+...+...++.+|.+|+++ |+.++++.+.+.++|..+
T Consensus 81 --------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~ 134 (379)
T TIGR00881 81 --------------------TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGL 134 (379)
T ss_pred --------------------hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHH
Confidence 246778889999999999999999999999999876 899999999999999999
Q ss_pred HH-HHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588 224 GI-TVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG 258 (540)
Q Consensus 224 ~p-~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~ 258 (540)
+| .+++.+.+..+|++.|++.+++.++..++.+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (379)
T TIGR00881 135 LPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLL 170 (379)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhee
Confidence 99 567777778899999988776655544444433
No 54
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.73 E-value=1.8e-15 Score=161.35 Aligned_cols=145 Identities=15% Similarity=0.280 Sum_probs=122.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 041588 73 QSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPA 152 (540)
Q Consensus 73 ~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~ 152 (540)
.+..+.+++.+.+.++..++.+++|+++||+ | ||++++++.++..++.++......
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-g---------------rr~~~~~~~~~~~~~~~~~~~~~~-------- 123 (481)
T TIGR00879 68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-G---------------RKKSLLIIALLFVIGAILMGLAAF-------- 123 (481)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-h---------------hHHHHHHHHHHHHHHHHHHHHhcc--------
Confidence 3388999999999999999999999999998 9 999999999999998888866521
Q ss_pred CCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHH---H
Q 041588 153 CKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVL---V 229 (540)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~---~ 229 (540)
..+.+.+++++++.|+|.+...+...++++|.+|+++ |+.++++++.+.++|..+++.++ +
T Consensus 124 ----------~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~ 187 (481)
T TIGR00879 124 ----------ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKV 187 (481)
T ss_pred ----------ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 1234578889999999999999999999999999887 89999999999999999999998 7
Q ss_pred hhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588 230 YIQEQKGWSVGFGIPTAFTICSIIIVAA 257 (540)
Q Consensus 230 ~l~~~~g~~~~f~i~~~~~~~~~i~~~~ 257 (540)
.+.+..||++.|++.++..++.++..++
T Consensus 188 ~~~~~~~w~~~f~~~~~~~~~~~~~~~~ 215 (481)
T TIGR00879 188 SLNNTLGWRIPLGLQLIPAGLLFLGLFF 215 (481)
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 7667789999999866655555444433
No 55
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.73 E-value=2.6e-15 Score=156.35 Aligned_cols=157 Identities=10% Similarity=0.114 Sum_probs=134.6
Q ss_pred HHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHH
Q 041588 58 AIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMV 137 (540)
Q Consensus 58 ~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~ 137 (540)
...+.+|.+.. ++|++..+.+...+.+..+..++.+++|+++||+ | ||+++..+.++..++.+
T Consensus 9 ~~~p~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g---------------~~~~~~~~~~~~~i~~~ 71 (377)
T PRK11102 9 MYLPALPVIAA-DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-G---------------RKPVILGGTLVFALAAV 71 (377)
T ss_pred HHhccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-C---------------ChHHHHHHHHHHHHHHH
Confidence 34466777764 6999999999999999999999999999999998 9 99999999999999888
Q ss_pred HHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHH
Q 041588 138 LLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAI 217 (540)
Q Consensus 138 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~ 217 (540)
++... .+...+++.+++.|++.+...+...++..|.+|+++ |++.+++.+...
T Consensus 72 ~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 124 (377)
T PRK11102 72 ACALA---------------------QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVM 124 (377)
T ss_pred HHHHH---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHH
Confidence 88766 245677888899999999888889999999998776 899999999999
Q ss_pred HHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588 218 NMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG 258 (540)
Q Consensus 218 ~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~ 258 (540)
++|..++|.+++++.+..||++.|++.++..++..+.....
T Consensus 125 ~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (377)
T PRK11102 125 TIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFF 165 (377)
T ss_pred HHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998999999988777666555544433
No 56
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.73 E-value=1.6e-17 Score=170.18 Aligned_cols=180 Identities=18% Similarity=0.209 Sum_probs=158.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhh
Q 041588 37 GGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIF 116 (540)
Q Consensus 37 ~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~ 116 (540)
..++.+..++++++.++.--|.+..-+ .-..+.+|.+++..|++.+.+.....++.|+.|+++||+ .
T Consensus 30 ~~~~~l~il~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-N----------- 96 (493)
T KOG1330|consen 30 SPTLTLVILCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-N----------- 96 (493)
T ss_pred cchHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-C-----------
Confidence 344667778888888888888776643 335678999999999999999999999999999999999 9
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588 117 KLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD 196 (540)
Q Consensus 117 ~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~ 196 (540)
|++++.+|..++.++.+..+++ ...+.+.+.|.+.|+|.+.+.|..+++++|.||
T Consensus 97 ----R~~v~~vG~~iW~~Av~~~~fs---------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~ 151 (493)
T KOG1330|consen 97 ----RKRVIAVGIFIWTLAVFASGFS---------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFP 151 (493)
T ss_pred ----cceEEeeHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCc
Confidence 9999999999999999999887 368899999999999999999999999999999
Q ss_pred CCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC-cchhhhHhHHHHHHHHHHHHhcCc
Q 041588 197 EADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG-WSVGFGIPTAFTICSIIIVAAGFP 260 (540)
Q Consensus 197 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g-~~~~f~i~~~~~~~~~i~~~~~~~ 260 (540)
++. |++.++++|+++++|.++|.++++++.+..+ ||++|.+.+++.++..++..+..+
T Consensus 152 ~~~------Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~ 210 (493)
T KOG1330|consen 152 DDK------RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVR 210 (493)
T ss_pred chh------hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhcc
Confidence 987 9999999999999999999999999998887 999999988887666555544443
No 57
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.73 E-value=6.2e-15 Score=159.09 Aligned_cols=174 Identities=10% Similarity=0.062 Sum_probs=130.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhc
Q 041588 39 WKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKL 118 (540)
Q Consensus 39 ~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~ 118 (540)
++.++......++.....+...+.++ ++.+++|++..+.+.+.+.+..++.++.+++|+++||+ |
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G------------- 99 (476)
T PLN00028 35 MRAFHLSWISFFTCFVSTFAAAPLLP-IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-G------------- 99 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-------------
Confidence 34444444455555555555544444 56789999999999998888889999999999999998 9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588 119 QGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA 198 (540)
Q Consensus 119 ~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~ 198 (540)
||+++..+.++..++.++.+.+. +...+++.+++.|++.+...+ ....++|.+|++
T Consensus 100 --~r~~~~~~~~~~~~~~~~~~~~~---------------------s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~ 155 (476)
T PLN00028 100 --PRYGSAFLLMLTAPAVFCMSLVS---------------------SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGK 155 (476)
T ss_pred --ChHHHHHHHHHHHHHHHHHHHhc---------------------CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChh
Confidence 99999999988888888777662 356677788889988876543 445678999887
Q ss_pred ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhh----h-----ccCcchhhhHhHHHHHHHHHHHHh
Q 041588 199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQ----E-----QKGWSVGFGIPTAFTICSIIIVAA 257 (540)
Q Consensus 199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~----~-----~~g~~~~f~i~~~~~~~~~i~~~~ 257 (540)
+ |+.+.++.+...++|+.+++.+.+.+. + ..|||+.|++.+++.++..+..++
T Consensus 156 ~------rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 156 I------VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred h------eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 6 899999988878888887776665442 2 248999999877766555444443
No 58
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.72 E-value=5.4e-15 Score=160.06 Aligned_cols=167 Identities=16% Similarity=0.209 Sum_probs=141.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhh
Q 041588 37 GGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIF 116 (540)
Q Consensus 37 ~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~ 116 (540)
.+|+.+..+.+..++..+.++.+...+ .++.+++|++..+++.+.+.+.++..++.+++|+++||+ |
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g----------- 83 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVL-TEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-G----------- 83 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-----------
Confidence 345566666666666666666555554 456688999999999999999999999999999999998 9
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588 117 KLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD 196 (540)
Q Consensus 117 ~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~ 196 (540)
||++++++.++..++.+++.+. .+...+++++++.|++.++..+...++..|.+|
T Consensus 84 ----~r~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~ 138 (496)
T PRK03893 84 ----RRLAMVISIVLFSVGTLACGFA---------------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWP 138 (496)
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHH---------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999988888876 246778889999999999989999999999998
Q ss_pred CCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHH
Q 041588 197 EADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAF 247 (540)
Q Consensus 197 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~ 247 (540)
+++ |+..+++++.+.++|..++|.+.+++.+..||++.|++.++.
T Consensus 139 ~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~ 183 (496)
T PRK03893 139 KHL------RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP 183 (496)
T ss_pred HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 876 889999999999999999999999999999999999864443
No 59
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.72 E-value=2.5e-15 Score=161.24 Aligned_cols=150 Identities=13% Similarity=0.034 Sum_probs=122.6
Q ss_pred HhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhccc
Q 041588 66 YLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSL 145 (540)
Q Consensus 66 yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~ 145 (540)
.+.+++|.+..+++.+.+.+.....++.+++|+++||+ | ||++++.+.++..++.++++.+.
T Consensus 44 ~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g---------------~r~~l~~~~~~~~~~~~~~~~~~-- 105 (455)
T TIGR00892 44 ELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-G---------------CRPVVIAGGLLASLGMILASFSS-- 105 (455)
T ss_pred HHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-C---------------chHHHHhhHHHHHHHHHHHHHhh--
Confidence 34578999999999999999999999999999999998 9 99999999988888888877652
Q ss_pred CCCCCCCCCCCCCccCCCchhHHHHH-HHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHH
Q 041588 146 DSLRPPACKERPCVEVNGGQNGFLLC-ALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFG 224 (540)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~ 224 (540)
+...+++ .+++.|++.+...+...++..+.++ ++ |+.+.++.+.+.++|+.++
T Consensus 106 -------------------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~ 159 (455)
T TIGR00892 106 -------------------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTL 159 (455)
T ss_pred -------------------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHH
Confidence 3444443 4577888888765556677788885 33 8999999999999999999
Q ss_pred HHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcC
Q 041588 225 ITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGF 259 (540)
Q Consensus 225 p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~ 259 (540)
|.+++++.+..||++.|++.+++.+++.+..++.+
T Consensus 160 ~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~ 194 (455)
T TIGR00892 160 APLNQYLFESFGWRGSFLILGGLLLHCCVCGALMR 194 (455)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999998887766655544443
No 60
>PRK09952 shikimate transporter; Provisional
Probab=99.72 E-value=2.2e-14 Score=153.12 Aligned_cols=175 Identities=13% Similarity=0.139 Sum_probs=124.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhc--CCChhHHHHHH-----HHHHHHHHHHHHHHHHHhhhhcCCCcch
Q 041588 38 GWKASPFIIVNEVAERLAFFAIAVNMTAYLVREM--HQSLPTAGTHV-----TDWIGAAYVLTILGAFLADAYLGQPALK 110 (540)
Q Consensus 38 ~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~l--g~s~~~a~~~~-----~~~~~~~~~~~~~gG~laD~~~G~~~~~ 110 (540)
++|..+..++..+++.+-+..+....+.++.+++ +.+... +... ++..+...++.++.|+++||+ |
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-G----- 92 (438)
T PRK09952 20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-G----- 92 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-c-----
Confidence 3455566666667776666555445555666655 566653 3332 223334556777889999998 9
Q ss_pred hhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhh
Q 041588 111 HVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSF 190 (540)
Q Consensus 111 ~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~ 190 (540)
||+++..+.+++.++.++.+++.+.... .-.....+++.|.++|++.|+..+....+
T Consensus 93 ----------rr~~l~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~ 149 (438)
T PRK09952 93 ----------RKRMLMLTVWMMGIATALIGLLPSFSTI-------------GWWAPVLLVTLRAIQGFAVGGEWGGAALL 149 (438)
T ss_pred ----------cHHHHHHHHHHHHHHHHHHhcCCcHHHH-------------HHHHHHHHHHHHHHHHhhhcccHHHHHHH
Confidence 9999999999999999988876321000 00012257788999999999999999999
Q ss_pred hhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhh--------hccCcchhhhHhHHHH
Q 041588 191 GADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQ--------EQKGWSVGFGIPTAFT 248 (540)
Q Consensus 191 ~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~--------~~~g~~~~f~i~~~~~ 248 (540)
..|.+|+++ |+...+....+..+|..++..+..++. +..|||..|++.++..
T Consensus 150 ~~e~~p~~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~ 209 (438)
T PRK09952 150 AVESAPKNK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLV 209 (438)
T ss_pred HHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHH
Confidence 999999887 888888888888888888877766654 2579999998766553
No 61
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.71 E-value=1.6e-14 Score=153.05 Aligned_cols=148 Identities=14% Similarity=0.134 Sum_probs=128.0
Q ss_pred hhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccC
Q 041588 67 LVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLD 146 (540)
Q Consensus 67 l~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~ 146 (540)
+.+++|.+..+++..++++..+..++.+++|+++||+ | ||++++.+..+..++.++...+
T Consensus 42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-G---------------rr~~l~~~~~~~~~~~~~~~~a---- 101 (413)
T PRK15403 42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-G---------------RRPVLITGALIFTLACAATLFT---- 101 (413)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-C---------------chHHHHHHHHHHHHHHHHHHHc----
Confidence 5678999999999999999999999999999999998 9 9999999999999988887766
Q ss_pred CCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 041588 147 SLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGIT 226 (540)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~ 226 (540)
.+...++++++++|++.+...+...+...|.+|+++ +.+.+++++.+.++|..++|.
T Consensus 102 -----------------~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~ 158 (413)
T PRK15403 102 -----------------TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPL 158 (413)
T ss_pred -----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 357788999999999987666666777889998876 788899999999999999999
Q ss_pred HHHhhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588 227 VLVYIQEQKGWSVGFGIPTAFTICSIIIVAA 257 (540)
Q Consensus 227 v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~ 257 (540)
+++++.+..||++.|++.++..+++.+..+.
T Consensus 159 lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 159 SGAALMHFVHWKVLFAIIAVMGLIAFVGLLL 189 (413)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998889999999877776666554433
No 62
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.70 E-value=1.7e-14 Score=155.43 Aligned_cols=155 Identities=13% Similarity=0.096 Sum_probs=123.0
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 041588 71 MHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRP 150 (540)
Q Consensus 71 lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (540)
+|.+..+.+.+.+.+.++..++++++|+++||+ | |||+++++.+++.++.+..++....-....
T Consensus 50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-G---------------rr~~~~~~~~l~~i~~~~~~~~~~~~~~~~ 113 (479)
T PRK10077 50 ESAANSLLGFCVASALIGCIIGGALGGYCSNRF-G---------------RRDSLKIAAVLFFISALGSAWPEFGFTSIG 113 (479)
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---------------cHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 388899999999999999999999999999998 9 999999999998888777765321100000
Q ss_pred CCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 041588 151 PACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVY 230 (540)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~ 230 (540)
.++......++++|++.|++.|+..+...++++|++|+++ |+.+++++..+..+|.++++.+++.
T Consensus 114 ---------~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~ 178 (479)
T PRK10077 114 ---------PDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYF 178 (479)
T ss_pred ---------ccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011235667899999999999999999999999999877 9999999999999999998877665
Q ss_pred hh--------hccCcchhhhHhHHHHHHHHHHHH
Q 041588 231 IQ--------EQKGWSVGFGIPTAFTICSIIIVA 256 (540)
Q Consensus 231 l~--------~~~g~~~~f~i~~~~~~~~~i~~~ 256 (540)
+. +..|||+.|++.++..++..++.+
T Consensus 179 ~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~ 212 (479)
T PRK10077 179 IARSGDASWLNTDGWRYMFASEAIPALLFLMLLY 212 (479)
T ss_pred HhccCcccccccCChHHHHHHHHHHHHHHHHHHH
Confidence 43 356899999987776666554433
No 63
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.70 E-value=1e-14 Score=155.64 Aligned_cols=157 Identities=13% Similarity=0.014 Sum_probs=126.2
Q ss_pred HHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhc
Q 041588 64 TAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSG 143 (540)
Q Consensus 64 ~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~ 143 (540)
..++.+ .|++..+.+++.+.+..+..++.+++|+++||+ | ||+++.++.++..++.+++....
T Consensus 50 ~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g---------------~~~~~~~~~~~~~~~~~~~~~~~ 112 (438)
T TIGR00712 50 MPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-N---------------PRVFLPAGLILSAAVMLLMGFVP 112 (438)
T ss_pred hHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-C---------------CceehHHHHHHHHHHHHHHhccc
Confidence 345555 599999999999999999999999999999998 9 99999999888888877765542
Q ss_pred ccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHH
Q 041588 144 SLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIF 223 (540)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i 223 (540)
.. ..+...+++.+++.+++.|...+.....+.|.+|+++ |++++++++.+.++|+.+
T Consensus 113 ~~-----------------~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~ 169 (438)
T TIGR00712 113 WA-----------------TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGI 169 (438)
T ss_pred cc-----------------cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHH
Confidence 10 0235566778888999999888888888999999887 999999999999999999
Q ss_pred HHHHHHhh-hhccCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588 224 GITVLVYI-QEQKGWSVGFGIPTAFTICSIIIVAAGFP 260 (540)
Q Consensus 224 ~p~v~~~l-~~~~g~~~~f~i~~~~~~~~~i~~~~~~~ 260 (540)
+|.+.+.+ .+..||+..|++.++..++..++.++..+
T Consensus 170 ~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~ 207 (438)
T TIGR00712 170 PPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMR 207 (438)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 98887754 44568999999877776665544444333
No 64
>PRK11043 putative transporter; Provisional
Probab=99.70 E-value=6.6e-14 Score=147.37 Aligned_cols=170 Identities=15% Similarity=0.209 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--hhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccch
Q 041588 45 IIVNEVAERLAFFAIAVNMTAY--LVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRF 122 (540)
Q Consensus 45 i~~~~~~~~~~~y~~~~~l~~y--l~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~ 122 (540)
++........++++...++|.+ +.+++|.+..+.+...+++.....++.+++|+++||+ | ||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g---------------~r 71 (401)
T PRK11043 8 LVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-G---------------RK 71 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-C---------------Cc
Confidence 4444444555555555666655 6688999999999999999999999999999999998 9 99
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHH
Q 041588 123 RTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKE 202 (540)
Q Consensus 123 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~ 202 (540)
+++..+..+..++.++...+ .+...+++++++.|++.+...+...++..|.+++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~--- 127 (401)
T PRK11043 72 PVLLAGLSLFALGSLGMLWV---------------------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK--- 127 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHh---------------------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH---
Confidence 99999998888888777765 246677888899999888777777788899998765
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588 203 AIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAA 257 (540)
Q Consensus 203 ~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~ 257 (540)
+...++..+...++|+.++|.+++++.+..||+..|++..+..++..+..+.
T Consensus 128 ---~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 128 ---ANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR 179 (401)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888889999999999999999999999998877766655554433
No 65
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.69 E-value=7.2e-14 Score=146.62 Aligned_cols=171 Identities=10% Similarity=0.067 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchH
Q 041588 44 FIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFR 123 (540)
Q Consensus 44 ~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~ 123 (540)
...+..+..-.+.....+.+|.+ .+++|.+..+.+...+.+.....++.++.|+++||+ | ||+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~lp~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g---------------~r~ 69 (392)
T PRK10473 7 CSFALVLLYPAGIDMYLVGLPRI-AADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-G---------------RKP 69 (392)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-C---------------ChH
Confidence 34445555555655555666654 567999999999999999999999999999999998 9 999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHH
Q 041588 124 TLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEA 203 (540)
Q Consensus 124 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~ 203 (540)
.++++.++..++.+++..+ .+...+++++++.|++.+...+...++..|.+|+++
T Consensus 70 ~l~~~~~~~~i~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~---- 124 (392)
T PRK10473 70 VAIPGAALFIIASLLCSLA---------------------ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR---- 124 (392)
T ss_pred HHHHHHHHHHHHHHHHHHh---------------------CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH----
Confidence 9999999988888887765 235667788889999988888888899999998876
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588 204 IQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG 258 (540)
Q Consensus 204 ~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~ 258 (540)
|++..++.+...++|..++|.+++++.+..||+..|++.++..++..++....
T Consensus 125 --r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~ 177 (392)
T PRK10473 125 --RAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFI 177 (392)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999998888899999988777665555544333
No 66
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.69 E-value=4.7e-14 Score=148.37 Aligned_cols=180 Identities=7% Similarity=-0.100 Sum_probs=133.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
|.+|.+....++...++..+.++++.|+++++|++..+.+++.+.+.+...++.+++|+++||+ |
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-g-------------- 66 (396)
T TIGR00882 2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-G-------------- 66 (396)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------------
Confidence 4568888888999999999999999999999999999999999999999999999999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
|||.++.+....+++...+......+.. .......++++.++.+++.+...+...++..|.-+ +
T Consensus 67 -rr~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~ 130 (396)
T TIGR00882 67 -LKKHLLWIISGLLVLFAPFFIYVFGPLL-------------QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N 130 (396)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHhhhHH-------------HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h
Confidence 9999998876665544332211100000 00112234555667788888777777766655321 1
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588 200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAA 257 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~ 257 (540)
++..++......++|..++|.+++.+.+ .||+..|++.++..++..++.+.
T Consensus 131 ------~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~ 181 (396)
T TIGR00882 131 ------SNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMF 181 (396)
T ss_pred ------cccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHH
Confidence 3446677778889999999999998865 59999998877766655544433
No 67
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.69 E-value=5.5e-14 Score=147.25 Aligned_cols=156 Identities=13% Similarity=0.053 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccch----HH
Q 041588 49 EVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRF----RT 124 (540)
Q Consensus 49 ~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~----~~ 124 (540)
.+....++..+.+++|.|+. ++|.|..+.|.+.+++.....++.+++|.++||+ | |+ +.
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g---------------~~~~~~~~ 75 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-S---------------QLIPALRL 75 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-c---------------chHHHHHH
Confidence 44455666777889999995 5899999999999999999999999999999998 9 73 33
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHH
Q 041588 125 LVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAI 204 (540)
Q Consensus 125 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~ 204 (540)
+.++..+..+ .+... .++.+.+++.+.+.+++.+...|...++..|.. ++
T Consensus 76 ~~~~~~~~~~---~~~~~--------------------~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~--~~----- 125 (382)
T PRK11128 76 LALLTLLFAV---AFWFG--------------------AHSFWLLFVAIGLFNLFFSPLVPLTDALANTWQ--KQ----- 125 (382)
T ss_pred HHHHHHHHHH---HHHHh--------------------cccHHHHHHHHHHHHHHHcccccHHHHHHHHHH--hh-----
Confidence 3322222111 11111 134677778888899988888888887777652 22
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHH
Q 041588 205 QKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSI 252 (540)
Q Consensus 205 ~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~ 252 (540)
|+..++......++|..++|.+++++.+++||+..|++.++..++.+
T Consensus 126 -~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~ 172 (382)
T PRK11128 126 -IGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASML 172 (382)
T ss_pred -ccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 67778888888899999999999999999999999987665544443
No 68
>TIGR00898 2A0119 cation transport protein.
Probab=99.68 E-value=2.1e-14 Score=155.98 Aligned_cols=147 Identities=14% Similarity=0.117 Sum_probs=126.3
Q ss_pred HhhHhcCCC---hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHh
Q 041588 66 YLVREMHQS---LPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVS 142 (540)
Q Consensus 66 yl~~~lg~s---~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~ 142 (540)
-+.+++|++ ..+.++..+++.++..++.++.|+++||+ | ||++++++.++..++.++.+++
T Consensus 114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-G---------------rr~~~~~~~~~~~i~~~~~~~~ 177 (505)
T TIGR00898 114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-G---------------RKKVLLLSTLVTAVSGVLTAFS 177 (505)
T ss_pred cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-c---------------chHHHHHHHHHHHHHHHHHHHc
Confidence 356789998 88999999999999999999999999998 9 9999999999988888887765
Q ss_pred cccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHH
Q 041588 143 GSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAI 222 (540)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~ 222 (540)
.+...+++.+++.|++.++..+...+++.|.+|+++ |+...+++..+..+|.+
T Consensus 178 ---------------------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~ 230 (505)
T TIGR00898 178 ---------------------PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLV 230 (505)
T ss_pred ---------------------ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHH
Confidence 357788999999999999999999999999999887 88888888888999999
Q ss_pred HHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588 223 FGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG 258 (540)
Q Consensus 223 i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~ 258 (540)
++|.++..+.+ |++.|++.++..++..+..++.
T Consensus 231 ~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~~~~ 263 (505)
T TIGR00898 231 LLPLVAYFIPD---WRWLQLAVSLPTFLFFLLSWFV 263 (505)
T ss_pred HHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHhc
Confidence 99988776654 9999988777666655555443
No 69
>PRK15075 citrate-proton symporter; Provisional
Probab=99.68 E-value=1.2e-13 Score=147.21 Aligned_cols=172 Identities=16% Similarity=0.167 Sum_probs=121.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHH-HHHHH-HHH----HHHHHHHHHHhhhhcCCCcchhh
Q 041588 39 WKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTH-VTDWI-GAA----YVLTILGAFLADAYLGQPALKHV 112 (540)
Q Consensus 39 ~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~-~~~~~-~~~----~~~~~~gG~laD~~~G~~~~~~~ 112 (540)
++....+++..+++.+-...+.... ..+.++++.+..+.+.. .+... ... .++.++.|+++||+ |
T Consensus 14 ~~~~~~~~~~~~~~~~d~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-G------- 84 (434)
T PRK15075 14 ARAILRVTSGNFLEMFDFFLFGFYA-TAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-G------- 84 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-c-------
Confidence 3444555555555555555444444 46777898877765433 22221 122 35678899999998 9
Q ss_pred hhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhh
Q 041588 113 HAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGA 192 (540)
Q Consensus 113 ~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~ 192 (540)
|||+++.+..++.++.++++++.+.... .......++++|++.|++.|...++...+.+
T Consensus 85 --------rr~~l~~~~~~~~~~~~l~~~~~~~~~~-------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~ 143 (434)
T PRK15075 85 --------RRKGLIVTLSIMASGTLLIAFVPGYATI-------------GLAAPLLVLLGRLLQGFSAGVELGGVSVYLA 143 (434)
T ss_pred --------hHHHHHHHHHHHHHHHHHHHhCCcHHHH-------------HHHHHHHHHHHHHHhhccccccHHHHHHHHH
Confidence 9999999999999999988876311000 0000124678899999999999898899999
Q ss_pred ccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh--------hhccCcchhhhHhHH
Q 041588 193 DQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYI--------QEQKGWSVGFGIPTA 246 (540)
Q Consensus 193 d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l--------~~~~g~~~~f~i~~~ 246 (540)
|.+|+++ |+...+++..+.++|..+++.+++.+ .+..||++.|++.++
T Consensus 144 e~~p~~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 144 EIATPGR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred hhCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 9999887 99999998888888888777776665 246799999987543
No 70
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.67 E-value=6.9e-14 Score=166.59 Aligned_cols=155 Identities=10% Similarity=0.062 Sum_probs=124.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChh--HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhh
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLP--TAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFK 117 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~--~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~ 117 (540)
+.+...++..++..+...+....+..++...++.+.. ..+++.+++.+...++.+++|+++||+ |
T Consensus 9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-g------------ 75 (1146)
T PRK08633 9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-S------------ 75 (1146)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-c------------
Confidence 4556666677777766666656666666666666544 367888889999999999999999998 9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588 118 LQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE 197 (540)
Q Consensus 118 ~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~ 197 (540)
||++++++.++.+++.++..+.... .+...+++.+++.|++.+...++..++++|.+|+
T Consensus 76 ---rk~~l~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 134 (1146)
T PRK08633 76 ---KNRVIRIVKLFEVGLTLLIVLAYYL------------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGK 134 (1146)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHH------------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCc
Confidence 9999999887766665554443210 2467888999999999999999999999999998
Q ss_pred CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 041588 198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQ 234 (540)
Q Consensus 198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~ 234 (540)
++ |+.+++++..+.++|.++||.+++++.+.
T Consensus 135 ~~------r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 135 EN------LSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred cc------chhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77 99999999999999999999999998775
No 71
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.67 E-value=2.4e-13 Score=147.33 Aligned_cols=179 Identities=18% Similarity=0.195 Sum_probs=139.2
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh----cCCCcchh
Q 041588 36 TGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAY----LGQPALKH 111 (540)
Q Consensus 36 ~~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~----~G~~~~~~ 111 (540)
+.++|+.+.++...+......+.....+|.|+.+ .|.+..+.+....+. ..+++.++.|.++||+ +|
T Consensus 8 ~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~~~~~--~~~~~~~l~gpl~Dr~~~~~~G------ 78 (491)
T PRK11010 8 IFQQPNSAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFFSLVG--QAYVFKFLWSPLMDRYTPPFLG------ 78 (491)
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH--HHHHHHHHHHHHHHcccccCCC------
Confidence 3445667778888888888888888889999864 689998888863333 3347899999999996 26
Q ss_pred hhhhhhcccchHH-HHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhh
Q 041588 112 VHAIFKLQGRFRT-LVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSF 190 (540)
Q Consensus 112 ~~~~~~~~~r~~~-i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~ 190 (540)
|||. ++++.+...++...+++.. | ..+.+.+.+.+++.+++.+...+...++
T Consensus 79 ---------rrr~~ll~~~i~~~~~~~~~a~~~--~----------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~ 131 (491)
T PRK11010 79 ---------RRRGWLLATQLLLLVAIAAMGFLE--P----------------GTQLRWLAALAVVIAFCSASQDIVFDAW 131 (491)
T ss_pred ---------CchHHHHHHHHHHHHHHHHHHHcC--C----------------cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8875 5566667777777766541 1 1346677777888898888888999999
Q ss_pred hhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh-ccCcchhhhHhHHHHHHHHHHHH
Q 041588 191 GADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQE-QKGWSVGFGIPTAFTICSIIIVA 256 (540)
Q Consensus 191 ~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~-~~g~~~~f~i~~~~~~~~~i~~~ 256 (540)
..|.+|+++ |+.+.++...+.++|..+++.+++++.+ ..||+..|++.++..++..+..+
T Consensus 132 ~~~~~~~~~------rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 132 KTDVLPAEE------RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL 192 (491)
T ss_pred HHHhcChhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999776 8999999999999999999999999988 46999999987776665544443
No 72
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.67 E-value=2.6e-13 Score=147.05 Aligned_cols=174 Identities=18% Similarity=0.151 Sum_probs=125.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhH----HHH--HHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhh
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPT----AGT--HVTDWIGAAYVLTILGAFLADAYLGQPALKHVH 113 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~----a~~--~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~ 113 (540)
+......+..+++.+-+.. ..+...++.++++.+... .+. ..++...+..++.+++|+++||+ |
T Consensus 16 ~~~~~~~~g~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-G-------- 85 (490)
T PRK10642 16 KAITAASLGNAMEWFDFGV-YGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-G-------- 85 (490)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c--------
Confidence 4445555666776655543 445556777777643322 111 23556677889999999999998 9
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhc
Q 041588 114 AIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGAD 193 (540)
Q Consensus 114 ~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d 193 (540)
||+++.++.+++.++.++.+++.+...+. -.....+++.|+++|+|.|+..++..++++|
T Consensus 86 -------rr~~l~~~~~l~~i~~~~~a~~~~~~~~g-------------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e 145 (490)
T PRK10642 86 -------RQKILAITIVIMSISTFCIGLIPSYATIG-------------IWAPILLLLCKMAQGFSVGGEYTGASIFVAE 145 (490)
T ss_pred -------cHHHHHHHHHHHHHHHHHHHhcccHHHHH-------------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHH
Confidence 99999999999999999988873210000 0001247889999999999999999999999
Q ss_pred cCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhh--------hccCcchhhhHhHHHHH
Q 041588 194 QYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQ--------EQKGWSVGFGIPTAFTI 249 (540)
Q Consensus 194 ~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~--------~~~g~~~~f~i~~~~~~ 249 (540)
.+|+++ |+...++...+.++|..+++.+...+. ...|||+.|++.++..+
T Consensus 146 ~~p~~~------Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l 203 (490)
T PRK10642 146 YSPDRK------RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI 203 (490)
T ss_pred hCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence 999887 888888888888888887776654432 25799999988655433
No 73
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.66 E-value=4.7e-14 Score=167.96 Aligned_cols=136 Identities=11% Similarity=0.099 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHH--HHHHHHHHHHHhcccCCCCCCCCC
Q 041588 77 TAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSC--IYSVGMVLLTVSGSLDSLRPPACK 154 (540)
Q Consensus 77 ~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~ 154 (540)
..++..+++.+...++.+++|+++||+ | ||+++..... +...+..++....
T Consensus 53 ~~~l~~~~~~l~~~l~~~~~G~laDr~-~---------------rk~~~~~~~~~~~~~~~~~~~~~~~----------- 105 (1140)
T PRK06814 53 LVTLAGAVFILPFFIFSALAGQLADKY-D---------------KAKLAKILKFAEIGIAALAIYGFHL----------- 105 (1140)
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhhhhc-c---------------HHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 456777788889999999999999998 9 9998644222 2222222222221
Q ss_pred CCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 041588 155 ERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQ 234 (540)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~ 234 (540)
.+.+.++++++++|++.+...|+..+++.|++++++ |+.++++.+.+.++|.++||.++|++.+.
T Consensus 106 ---------~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~ 170 (1140)
T PRK06814 106 ---------NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATIS 170 (1140)
T ss_pred ---------hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 247789999999999999999999999999999887 99999999999999999999999999999
Q ss_pred cCcchhhhHhHHHHHHHHHH
Q 041588 235 KGWSVGFGIPTAFTICSIII 254 (540)
Q Consensus 235 ~g~~~~f~i~~~~~~~~~i~ 254 (540)
.||++.|+..+++.++++++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~ 190 (1140)
T PRK06814 171 GNFVILVALLMGIAVLGWLA 190 (1140)
T ss_pred cccHHHHHHHHHHHHHHHHH
Confidence 99999885444444444433
No 74
>PRK10133 L-fucose transporter; Provisional
Probab=99.65 E-value=2.2e-13 Score=145.42 Aligned_cols=152 Identities=13% Similarity=0.062 Sum_probs=120.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
..+..+.+..+...+........+|.+ ++++|.+..+.++..+.+.++..++.++.|+++||+ |
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G-------------- 89 (438)
T PRK10133 26 IPFALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-S-------------- 89 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------------
Confidence 344555555556566665556666655 889999999999999999999999999999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
|||++.++..++.++.+++..... ..+...++++++++|+|.|...++..+++.|..++++
T Consensus 90 -~r~~l~~g~~~~~~~~~l~~~~~~------------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~ 150 (438)
T PRK10133 90 -YKAGIITGLFLYALGAALFWPAAE------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS 150 (438)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHh------------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh
Confidence 999999999999999877643211 1357788999999999999999999999988754443
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 041588 200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQ 232 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~ 232 (540)
|....+.++....+|..++|.+++.+.
T Consensus 151 ------~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 151 ------GHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888889888888876543
No 75
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.65 E-value=1.4e-13 Score=145.96 Aligned_cols=180 Identities=9% Similarity=-0.076 Sum_probs=133.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
|.++...+..+.....++...+..+..-..++|++..+.+++.+++...+.++.++.|+++||+ |
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G-------------- 98 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-G-------------- 98 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------------
Confidence 6666666666666666666655544444448999999999999999999999999999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
.|+++.++.++..+.+++++++... ...+...+++.+++.|++ |...+.....++++||+++
T Consensus 99 -~R~v~~~~~ll~~i~~~~~~~a~~~----------------~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~ 160 (462)
T PRK15034 99 -GRRWTVFSTAILIIPCVWLGIAVQN----------------PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK 160 (462)
T ss_pred -ChHHHHHHHHHHHHHHHHHHHHHcc----------------cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH
Confidence 9999999999999988888765210 013577888999999998 6677888888999999887
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhh-----hc-------------cCcchhhhHhHHHHHHHHHHHHhc
Q 041588 200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQ-----EQ-------------KGWSVGFGIPTAFTICSIIIVAAG 258 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~-----~~-------------~g~~~~f~i~~~~~~~~~i~~~~~ 258 (540)
|+++.+++....|+|..+++.+.+.+. +. .+|+.++++..+..+++.++.++.
T Consensus 161 ------rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 161 ------QGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred ------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999987677777766655544322 22 235555556555555555555444
No 76
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.64 E-value=1.4e-13 Score=146.34 Aligned_cols=175 Identities=14% Similarity=0.140 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh---cCCCcchhhhhhhhcccchH-
Q 041588 48 NEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAY---LGQPALKHVHAIFKLQGRFR- 123 (540)
Q Consensus 48 ~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~---~G~~~~~~~~~~~~~~~r~~- 123 (540)
..+..+..+..+.++++.|+++++|++..+++.+.++..+...+..|+.|+++||. +| |||
T Consensus 7 g~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~G---------------rrr~ 71 (437)
T TIGR00792 7 GDFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWG---------------KFRP 71 (437)
T ss_pred chHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCC---------------Ccch
Confidence 34556667777788999999999999999999999999999999999999999984 36 755
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHH
Q 041588 124 TLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEA 203 (540)
Q Consensus 124 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~ 203 (540)
.++.+.....++.+++....... .......+++...+.+++.+.......++.+|..++.+
T Consensus 72 ~i~~~~~~~~i~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~---- 132 (437)
T TIGR00792 72 WLLIGAIPFSIVLVLLFTTPDFS---------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPR---- 132 (437)
T ss_pred hHHHhHHHHHHHHHHHHhCCCCC---------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHH----
Confidence 56677777777777766542100 01224455556667788888877788888888875432
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhhh-------hccCcchhhhHhHHHHHHHHHHHHh
Q 041588 204 IQKYVFFNWFFFAINMGAIFGITVLVYIQ-------EQKGWSVGFGIPTAFTICSIIIVAA 257 (540)
Q Consensus 204 ~~r~~~~~~~~~~~~iG~~i~p~v~~~l~-------~~~g~~~~f~i~~~~~~~~~i~~~~ 257 (540)
+|++..++...+.++|+.+++.+.+.+. +..||+..+.+.++..++..++...
T Consensus 133 -~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~ 192 (437)
T TIGR00792 133 -ERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFF 192 (437)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHc
Confidence 2788888888888888877766655443 2457998888777666555544433
No 77
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.63 E-value=4.8e-14 Score=146.00 Aligned_cols=160 Identities=16% Similarity=0.086 Sum_probs=133.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccc
Q 041588 41 ASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQG 120 (540)
Q Consensus 41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~ 120 (540)
.+|..++..+.....++...+.+|.|+.+++|++..+.+.+.+.+.++..++.+++|+++||+ |
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g--------------- 65 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-G--------------- 65 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-C---------------
Confidence 456677777788888888888888889999999999999999999999999999999999998 9
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCCh
Q 041588 121 RFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADE 200 (540)
Q Consensus 121 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~ 200 (540)
||++++++.++..++.+++..+. .+.+.+++++++.|++.+.. +...++++|.+|+++
T Consensus 66 ~r~~~~~~~~~~~i~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~- 123 (366)
T TIGR00886 66 PRYTTTLSLLLLAIPCLWAGLAV--------------------QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI- 123 (366)
T ss_pred chHHHHHHHHHHHHHHHHHHHHh--------------------hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh-
Confidence 99999999999999988887762 04677888899999986654 556788899998876
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh----------ccCcchhhhH
Q 041588 201 KEAIQKYVFFNWFFFAINMGAIFGITVLVYIQE----------QKGWSVGFGI 243 (540)
Q Consensus 201 ~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~----------~~g~~~~f~i 243 (540)
|+...+++....++|..+++.+++.+.. +.+|++.|++
T Consensus 124 -----r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~ 171 (366)
T TIGR00886 124 -----QGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI 171 (366)
T ss_pred -----hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence 8899999888888888888777766544 3489999943
No 78
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.62 E-value=5.3e-13 Score=145.07 Aligned_cols=181 Identities=12% Similarity=0.043 Sum_probs=131.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHh----cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhh
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVRE----MHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAI 115 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~----lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~ 115 (540)
+.+..+.+..+...+-...+...++..-.+. .+.+..+.+.+.+.+.++..++.++.|+++||+ |
T Consensus 16 ~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-G---------- 84 (502)
T TIGR00887 16 RAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-G---------- 84 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-c----------
Confidence 3334444444554444443433344322211 234566778899999999999999999999998 9
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccC
Q 041588 116 FKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQY 195 (540)
Q Consensus 116 ~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~ 195 (540)
||+++.++.++..++.++.+.+... .+..+...+++++++.|++.|+..+....+.+|.+
T Consensus 85 -----rr~~~~~~~~~~~v~~~~~~~~~~~---------------~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~ 144 (502)
T TIGR00887 85 -----RKRVYGMELIIMIIATVASGLSPGS---------------SPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFA 144 (502)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHccCc---------------ccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhc
Confidence 9999999999999988877765210 00012567889999999999999999999999999
Q ss_pred CCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh-----------------------ccCcchhhhHhHHHHHHHH
Q 041588 196 DEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQE-----------------------QKGWSVGFGIPTAFTICSI 252 (540)
Q Consensus 196 ~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~-----------------------~~g~~~~f~i~~~~~~~~~ 252 (540)
|++. |+.+.++++.+..+|..+++.+..++.. ..+||+.|.+.++..++..
T Consensus 145 p~~~------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~ 218 (502)
T TIGR00887 145 TKKW------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLAL 218 (502)
T ss_pred Chhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHH
Confidence 9987 9999999999999999998888765432 2379999977666555544
Q ss_pred HHHHh
Q 041588 253 IIVAA 257 (540)
Q Consensus 253 i~~~~ 257 (540)
+..+.
T Consensus 219 ~~~~~ 223 (502)
T TIGR00887 219 YFRLT 223 (502)
T ss_pred HHHHh
Confidence 44333
No 79
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.62 E-value=1.1e-12 Score=142.21 Aligned_cols=182 Identities=15% Similarity=0.114 Sum_probs=142.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
|.+..+....++.+++...-..-++-++. ++.-|....+++......-..+..+++|.++||+ .
T Consensus 10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-d-------------- 73 (524)
T PF05977_consen 10 RNFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-D-------------- 73 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-c--------------
Confidence 44555666666777766655555554544 4556777888888888888889999999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
|||+++.+.++..+..+.+++..... ..+.+.+++..++.+++.+...|+..+++.++.|+++
T Consensus 74 -rrrili~~~~~~~~~~~~L~~l~~~~----------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~ 136 (524)
T PF05977_consen 74 -RRRILILSQLLRALVALLLAVLAFFG----------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED 136 (524)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHhC----------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh
Confidence 99999999988777666655543222 1356777888889999999999999999999999877
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588 200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFP 260 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~ 260 (540)
...+.++.....|+.-.+||.++|.+....|-.+.|.+.++..+++++++...++
T Consensus 137 ------L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~ 191 (524)
T PF05977_consen 137 ------LPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKP 191 (524)
T ss_pred ------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 7888899999999999999999999998889888998887776666555544443
No 80
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.61 E-value=5.4e-13 Score=138.68 Aligned_cols=157 Identities=13% Similarity=0.155 Sum_probs=111.9
Q ss_pred HHHHHhhHhcC--CChhHHHHHHHH--H---HHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHH
Q 041588 62 NMTAYLVREMH--QSLPTAGTHVTD--W---IGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSV 134 (540)
Q Consensus 62 ~l~~yl~~~lg--~s~~~a~~~~~~--~---~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~ 134 (540)
++..++.++.. .++.+.+...+. + .+...++.++.|+++||+ | |||+++++.++..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g---------------~r~~l~~~~~~~~~ 77 (394)
T TIGR00883 14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-G---------------RKKTLVITLLMMGI 77 (394)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-h---------------hHHHHHHHHHHHHH
Confidence 34455555543 334444443332 2 222345789999999998 9 99999999999999
Q ss_pred HHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHH
Q 041588 135 GMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFF 214 (540)
Q Consensus 135 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~ 214 (540)
+.+++.++.+.+.. .......+++++++.|++.+...+...++++|.+++++ |+...++.+
T Consensus 78 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~ 138 (394)
T TIGR00883 78 GTLLIGLLPSYATI-------------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQ 138 (394)
T ss_pred HHHHHhhCCChhhh-------------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHH
Confidence 98888776321100 00012357788899999999999999999999998876 899999999
Q ss_pred HHHHHHHHHHHHHHHhhh--------hccCcchhhhHhHHHHHHHHH
Q 041588 215 FAINMGAIFGITVLVYIQ--------EQKGWSVGFGIPTAFTICSII 253 (540)
Q Consensus 215 ~~~~iG~~i~p~v~~~l~--------~~~g~~~~f~i~~~~~~~~~i 253 (540)
.+..+|..+++.+.+.+. +..||++.|.+.++..+++.+
T Consensus 139 ~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 185 (394)
T TIGR00883 139 VGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLY 185 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHH
Confidence 999999999988876653 356899999876665544433
No 81
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.60 E-value=2e-12 Score=137.30 Aligned_cols=165 Identities=12% Similarity=0.040 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccc-hH
Q 041588 45 IIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGR-FR 123 (540)
Q Consensus 45 i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r-~~ 123 (540)
+.+..++...++-...+.++.|+.+++|++..+.|++.+.+.++..++++++|+++||+ | | |+
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g---------------~~r~ 70 (418)
T TIGR00889 7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-L---------------SAQK 70 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---------------ccHH
Confidence 44455566666666679999999999999999999999999999999999999999998 6 5 77
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC--hH
Q 041588 124 TLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD--EK 201 (540)
Q Consensus 124 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~--~~ 201 (540)
++.++.++..++..+.... .+...+++.+++.+++.+...+...++..+...+.. -.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~ 129 (418)
T TIGR00889 71 VYAVCHFAGALLLFFAAQV---------------------TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVV 129 (418)
T ss_pred HHHHHHHHHHHHHHHHHHh---------------------cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCch
Confidence 7777777776766666554 234556667777777766655555444322211000 00
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHH
Q 041588 202 EAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSII 253 (540)
Q Consensus 202 ~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i 253 (540)
+.-.|.+.++ .+|.+++|.+++.+....+|. +|++.++..++..+
T Consensus 130 ~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~ 174 (418)
T TIGR00889 130 TDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGV 174 (418)
T ss_pred hcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHH
Confidence 0001333333 478888888888884332344 45555554444443
No 82
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.57 E-value=4.6e-12 Score=134.14 Aligned_cols=172 Identities=12% Similarity=0.064 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccc
Q 041588 42 SPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGR 121 (540)
Q Consensus 42 ~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r 121 (540)
++.+....+...+.+....+.+| .+++++|++..+.+++.+.+.++..++.+++|+++||+ | |
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~-~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G---------------~ 67 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVP-QFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-S---------------Y 67 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C---------------c
Confidence 44455555555555544445554 55789999999999999999999999999999999998 9 9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChH
Q 041588 122 FRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEK 201 (540)
Q Consensus 122 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~ 201 (540)
|++++++.++++++.+++..+.. ..+...+++++++.|+|.|...+...++..+..|+++
T Consensus 68 r~~~~~g~~l~~~g~~l~~~~~~------------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~-- 127 (410)
T TIGR00885 68 KAGILLGLFLYALGAFLFWPAAE------------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST-- 127 (410)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh------------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH--
Confidence 99999999999999887654421 1346778889999999999999999999988887765
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh--------------------------ccCcchhhhHhHHHHHHHHHH
Q 041588 202 EAIQKYVFFNWFFFAINMGAIFGITVLVYIQE--------------------------QKGWSVGFGIPTAFTICSIII 254 (540)
Q Consensus 202 ~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~--------------------------~~g~~~~f~i~~~~~~~~~i~ 254 (540)
|++..++.+...++|..++|.+++.+.. ..+|++.|.+.++..++..++
T Consensus 128 ----~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 128 ----ATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888999999999999887642 236999998766655444333
No 83
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.56 E-value=7.4e-13 Score=137.05 Aligned_cols=145 Identities=16% Similarity=0.212 Sum_probs=118.2
Q ss_pred HHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHH
Q 041588 60 AVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLL 139 (540)
Q Consensus 60 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l 139 (540)
.+.+| .+.+++|++.++++.+.+.+.++..++.++.|+++||+ | |||++.++.++..++.+..
T Consensus 20 ~~~lp-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g---------------~r~~~~~~~~~~~~~~~~~ 82 (355)
T TIGR00896 20 GPLLP-QIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-G---------------EERSVAAGLLLIAAGILIR 82 (355)
T ss_pred cccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-C---------------chHHHHHHHHHHHHHHHHH
Confidence 34444 46678999999999999999999999999999999998 9 9999999988877776655
Q ss_pred HHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHH
Q 041588 140 TVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINM 219 (540)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~i 219 (540)
.. .+...+++.+++.|+|.+...+.......|.+++ + |+...++++.+.++
T Consensus 83 -~~---------------------~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~ 133 (355)
T TIGR00896 83 -SA---------------------PGTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-R------VGLMTGLYSMALMG 133 (355)
T ss_pred -Hh---------------------ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-h------hhHHHHHHHHHHHH
Confidence 32 2356677889999999888777788888888764 3 88899999999999
Q ss_pred HHHHHHHHHHhhhhccC--cchhhhHhHHHHHH
Q 041588 220 GAIFGITVLVYIQEQKG--WSVGFGIPTAFTIC 250 (540)
Q Consensus 220 G~~i~p~v~~~l~~~~g--~~~~f~i~~~~~~~ 250 (540)
|..+++.+++.+.+..+ |+..|.+.++..++
T Consensus 134 g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~ 166 (355)
T TIGR00896 134 GAALAAAATVPLAQHSGGHWQQALAWWALPALL 166 (355)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 99999999998877653 88888765554433
No 84
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.55 E-value=2.6e-11 Score=127.94 Aligned_cols=166 Identities=13% Similarity=0.156 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh----cCCCcchhhhhhhhcccch
Q 041588 47 VNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAY----LGQPALKHVHAIFKLQGRF 122 (540)
Q Consensus 47 ~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~----~G~~~~~~~~~~~~~~~r~ 122 (540)
...+.....+.-...-+|.|+.+ .|+|.++.|++..+... ++..++.|+++||+ +| ||
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g---------------~r 67 (402)
T PRK11902 6 LLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLG---------------RR 67 (402)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCC---------------cc
Confidence 34455555566667788999985 69999999998666654 68899999999997 26 66
Q ss_pred H-HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChH
Q 041588 123 R-TLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEK 201 (540)
Q Consensus 123 ~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~ 201 (540)
| .+.++.++.++++..+.+.. +..+.+.+++..++.++..+...++..++.+|.+|+++
T Consensus 68 r~~l~~~~~~~~l~~~~l~~~~------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-- 127 (402)
T PRK11902 68 RGWLLLTQVGLAASIAAMAFCP------------------PHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE-- 127 (402)
T ss_pred hhHHHHHHHHHHHHHHHHHhcC------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh--
Confidence 5 67777778877777766541 11234555555556677788888999999999998877
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhc-cCcchhhhHhHHHHHHHHHH
Q 041588 202 EAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQ-KGWSVGFGIPTAFTICSIII 254 (540)
Q Consensus 202 ~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~-~g~~~~f~i~~~~~~~~~i~ 254 (540)
|+++.++...+.++|..+++.+++++.+. .||+..|++.++..++..+.
T Consensus 128 ----r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 128 ----RGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT 177 (402)
T ss_pred ----hhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999988885 49999999877766554443
No 85
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.55 E-value=2.3e-12 Score=133.37 Aligned_cols=157 Identities=13% Similarity=0.103 Sum_probs=115.9
Q ss_pred HHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh----cCCCcchhhhhhhhcccchHHH-HHHHHHHHHHH
Q 041588 62 NMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAY----LGQPALKHVHAIFKLQGRFRTL-VVFSCIYSVGM 136 (540)
Q Consensus 62 ~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~----~G~~~~~~~~~~~~~~~r~~~i-~~~~~~~~~~~ 136 (540)
-+|.+ .+++|+|.++.+..... ..... ..++.|.++||+ +| |||.+ +.+.++..+.+
T Consensus 10 ~~~~~-~~~~g~s~~~~g~~~~~-~~~~~-~~~~~g~~~Dr~~~~~~G---------------rr~~~l~~~~~~~~~~~ 71 (356)
T TIGR00901 10 TLPYW-LRSKNVSLKTIGFFSLV-GLPYS-LKFLWSPLVDTVYLPFFG---------------RRRSWLVLTQVLLLSLL 71 (356)
T ss_pred HHHHH-HHHcCCCHHHHHHHHHH-HHHHH-HHHHHHHHHhcccCCCCC---------------ccHHHHHHHHHHHHHHH
Confidence 34454 45789999999988655 33333 388999999997 47 98875 55666666666
Q ss_pred HHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHH
Q 041588 137 VLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFA 216 (540)
Q Consensus 137 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~ 216 (540)
..+.+.. +..+...++...++.+++.+...++..++++|++|+++ |+.+.++...+
T Consensus 72 ~~l~~~~------------------~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~ 127 (356)
T TIGR00901 72 LILSFLV------------------PSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVG 127 (356)
T ss_pred HHHHcCC------------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHH
Confidence 6665441 11234445555556677777888999999999998876 99999999999
Q ss_pred HHHHHHHHHHHHHhhhhccC--------cchhhhHhHHHHHHHHHHHHhcCc
Q 041588 217 INMGAIFGITVLVYIQEQKG--------WSVGFGIPTAFTICSIIIVAAGFP 260 (540)
Q Consensus 217 ~~iG~~i~p~v~~~l~~~~g--------~~~~f~i~~~~~~~~~i~~~~~~~ 260 (540)
.++|.++++.+++++.+..| |+..|++.++..+++.++.++..+
T Consensus 128 ~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~ 179 (356)
T TIGR00901 128 YRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAK 179 (356)
T ss_pred HHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999988888 999998887776665555443333
No 86
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.55 E-value=1.2e-11 Score=132.22 Aligned_cols=197 Identities=12% Similarity=0.121 Sum_probs=138.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhh----hcCCCcchhhhhhh
Q 041588 41 ASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADA----YLGQPALKHVHAIF 116 (540)
Q Consensus 41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~----~~G~~~~~~~~~~~ 116 (540)
+...+....+...++|-...++++.|+ +++|.+...++.+..+..+...+..++.|++||| + |
T Consensus 5 ~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-G----------- 71 (477)
T TIGR01301 5 KLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-G----------- 71 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-C-----------
Confidence 445566666777788877788888886 5799999999999999999999999999999995 6 9
Q ss_pred hcccchHHHHHH-HHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccC
Q 041588 117 KLQGRFRTLVVF-SCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQY 195 (540)
Q Consensus 117 ~~~~r~~~i~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~ 195 (540)
|||.++++ .+..++++++++.+.....+.- +...............++..+.-++....++...++++|+.
T Consensus 72 ----RRrp~il~g~~~~~~~l~ll~~~~~~~~~~~----~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~ 143 (477)
T TIGR01301 72 ----RRRPFIAAGAALVAFAVILIGFAADIGHLFG----DNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLT 143 (477)
T ss_pred ----ChHHHHHHHHHHHHHHHHHHHhCchhhhhcc----ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99998875 5556667677666532110000 00000000011133444555556677777788899999999
Q ss_pred CCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh--hhcc-------------CcchhhhHhHHHHHHHHHHHHhcCc
Q 041588 196 DEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYI--QEQK-------------GWSVGFGIPTAFTICSIIIVAAGFP 260 (540)
Q Consensus 196 ~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l--~~~~-------------g~~~~f~i~~~~~~~~~i~~~~~~~ 260 (540)
|+++++ ++.+++++....++|+.+++.+++++ .+.. +.+..|++.+++.+++.++..+..+
T Consensus 144 p~~~~~----~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~ 219 (477)
T TIGR01301 144 GGDARR----TRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVK 219 (477)
T ss_pred CchhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeee
Confidence 987621 46789999999999999999998865 2211 5677888888877777777666555
Q ss_pred cc
Q 041588 261 YY 262 (540)
Q Consensus 261 ~~ 262 (540)
|+
T Consensus 220 E~ 221 (477)
T TIGR01301 220 EN 221 (477)
T ss_pred cc
Confidence 54
No 87
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.55 E-value=4e-12 Score=129.79 Aligned_cols=182 Identities=13% Similarity=0.041 Sum_probs=147.5
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhh
Q 041588 37 GGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIF 116 (540)
Q Consensus 37 ~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~ 116 (540)
.++|.++.-.+........++ +.+.+..++.+++|+|..|.++++.++.+...+..++-|.+.||+ |
T Consensus 11 ~~~~~L~~S~~af~v~F~VW~-l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-G----------- 77 (417)
T COG2223 11 IARRNLWLSTLAFDVGFMVWT-LFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-G----------- 77 (417)
T ss_pred chhHHHHHHHHHHHHHHHHHH-HHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-C-----------
Confidence 344666655555555555554 445667778899999999999999999999999999999999998 9
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588 117 KLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD 196 (540)
Q Consensus 117 ~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~ 196 (540)
-|++..++.++.++-.+.++++...+ +.+.+++..++.|++.|- .+...+..+..||
T Consensus 78 ----gR~~~~~s~~l~~IP~~~~~~a~~~~------------------~~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP 134 (417)
T COG2223 78 ----GRKWTILSMLLLLIPCLGLAFAVTYP------------------STWQLLVIGLLLGLAGAS-FAVGMPNASFFFP 134 (417)
T ss_pred ----chHHHHHHHHHHHHHHHHHHHHccCC------------------chHHHHHHHHHHhcccce-ehcccccccccCC
Confidence 99999999999999999988884322 235666677777776554 4566677899999
Q ss_pred CCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC---cchhhhHhHHHHHHHHHHHHhcCcc
Q 041588 197 EADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG---WSVGFGIPTAFTICSIIIVAAGFPY 261 (540)
Q Consensus 197 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g---~~~~f~i~~~~~~~~~i~~~~~~~~ 261 (540)
+++ ++.+.+++. ..|+|..+...+++.+....| |+..-.+..+.++++.+.+++..++
T Consensus 135 ~~~------qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 135 KEK------QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred hhh------hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 987 899999999 999999999999999998888 9999988888888888877776554
No 88
>PRK09952 shikimate transporter; Provisional
Probab=99.50 E-value=7.8e-13 Score=141.25 Aligned_cols=183 Identities=13% Similarity=0.012 Sum_probs=131.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhh
Q 041588 37 GGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIF 116 (540)
Q Consensus 37 ~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~ 116 (540)
++++....+....++..+.+|.+.++++.|+.+.+|++......+.........++.+++|+++||+ |
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-g----------- 314 (438)
T PRK09952 247 RHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-G----------- 314 (438)
T ss_pred HchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-----------
Confidence 3444434444566777888999999999999999999887665555556666778889999999998 9
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588 117 KLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD 196 (540)
Q Consensus 117 ~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~ 196 (540)
|||++.++.++..++.+.+..... .......+++..++.+++.+...+...++.+|.+|
T Consensus 315 ----rr~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p 373 (438)
T PRK09952 315 ----RRRVYITGALIGTLSAFPFFMALE-----------------AQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFG 373 (438)
T ss_pred ----chHHHHHHHHHHHHHHHHHHHHHH-----------------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999998887665554443333210 00122333444555667777777778899999999
Q ss_pred CCChHHHHhhhhhHHH-HHHHHHHHHHHHHHHHHhhhhcc--CcchhhhHhHHHHHHHHHHHHhc
Q 041588 197 EADEKEAIQKYVFFNW-FFFAINMGAIFGITVLVYIQEQK--GWSVGFGIPTAFTICSIIIVAAG 258 (540)
Q Consensus 197 ~~~~~~~~~r~~~~~~-~~~~~~iG~~i~p~v~~~l~~~~--g~~~~f~i~~~~~~~~~i~~~~~ 258 (540)
.+. |+++.++ +..+..+|++++|.+.+++.+.. +|...+.+.+++.+++.+..+..
T Consensus 374 ~~~------r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 374 ASY------RYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred cch------hHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 976 8888888 44556689999999999998754 47887877777777776665544
No 89
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.50 E-value=9.9e-13 Score=146.31 Aligned_cols=200 Identities=16% Similarity=0.173 Sum_probs=148.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhh
Q 041588 37 GGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIF 116 (540)
Q Consensus 37 ~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~ 116 (540)
.++|.+...+....+....+.+.......-+.++++++..+.|++.+.+.+++.++.++.|+++||+ |
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~----------- 96 (633)
T TIGR00805 29 SKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-H----------- 96 (633)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-C-----------
Confidence 3445443444434444445555555556677889999999999999999999999999999999998 9
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHhcccCC----------------CCCCCCCC------------CCCccCC--Cchh
Q 041588 117 KLQGRFRTLVVFSCIYSVGMVLLTVSGSLDS----------------LRPPACKE------------RPCVEVN--GGQN 166 (540)
Q Consensus 117 ~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~----------------~~~~~~~~------------~~~~~~~--~~~~ 166 (540)
|+|.+.++.+++.+|.++.++..++-. ..+..|.. ..|.+.. +...
T Consensus 97 ----r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (633)
T TIGR00805 97 ----RPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMW 172 (633)
T ss_pred ----cceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCcee
Confidence 999999999999999999887642110 00112210 0122221 1235
Q ss_pred HHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhcc-----------
Q 041588 167 GFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQK----------- 235 (540)
Q Consensus 167 ~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~----------- 235 (540)
..++++++++|+|.+...+...+++.|.+|+++ |+..+++++.+..+|..+|+++++++.+.+
T Consensus 173 ~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~ 246 (633)
T TIGR00805 173 LLFLVSQLLRGIGATPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDV 246 (633)
T ss_pred hhhHHHHHHHhccCCcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCC
Confidence 677899999999999999999999999999987 999999999999999999999999887543
Q ss_pred -----------CcchhhhHhHHHHHHHHHHHHhc
Q 041588 236 -----------GWSVGFGIPTAFTICSIIIVAAG 258 (540)
Q Consensus 236 -----------g~~~~f~i~~~~~~~~~i~~~~~ 258 (540)
+|+.+|++.+++.++..+.++..
T Consensus 247 ~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~ 280 (633)
T TIGR00805 247 ILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFF 280 (633)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 27777887776665555444433
No 90
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.49 E-value=2.9e-13 Score=137.92 Aligned_cols=179 Identities=18% Similarity=0.167 Sum_probs=142.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCcchhhhhhhhc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYL-GQPALKHVHAIFKL 118 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~-G~~~~~~~~~~~~~ 118 (540)
|-+|.+++++++..+.-|++..|.|.|+.+..|+|..+++...+.|-.+...++++.||+|||++ |
T Consensus 252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkg------------- 318 (448)
T COG2271 252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKG------------- 318 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccc-------------
Confidence 67899999999999999999999999999999999999999999999999999999999999998 5
Q ss_pred ccchHHH-HHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588 119 QGRFRTL-VVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE 197 (540)
Q Consensus 119 ~~r~~~i-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~ 197 (540)
||..+ ++++++..++.+.+..+. +.+.....+.+..+|+..-+.+-.+.....|..|+
T Consensus 319 --rR~p~~~i~~~~i~~~~~~~w~~~-------------------~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK 377 (448)
T COG2271 319 --RRGPMALIFMLLITASLVLYWLAP-------------------NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPK 377 (448)
T ss_pred --ccchHHHHHHHHHHHHHHHHHcCC-------------------CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccH
Confidence 66444 444455555555555441 12455556666666666555554555556788888
Q ss_pred CChHHHHhhhhhHHHHHHHHHH-HHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588 198 ADEKEAIQKYVFFNWFFFAINM-GAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG 258 (540)
Q Consensus 198 ~~~~~~~~r~~~~~~~~~~~~i-G~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~ 258 (540)
+. .+++.+.-.++..+ |+..+....|++.|.+||...|.+..+..+++.+.++..
T Consensus 378 ~A------aGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~ 433 (448)
T COG2271 378 KA------AGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPV 433 (448)
T ss_pred hh------ccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence 76 78888888888887 888899999999999999999998777766666655443
No 91
>PRK09669 putative symporter YagG; Provisional
Probab=99.49 E-value=2.7e-11 Score=129.61 Aligned_cols=178 Identities=14% Similarity=0.125 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh---cCCCcchhhhhhhhcc
Q 041588 43 PFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAY---LGQPALKHVHAIFKLQ 119 (540)
Q Consensus 43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~---~G~~~~~~~~~~~~~~ 119 (540)
+.-.+..+..+..+..+..+++.|+++++|++...++.+..+..+...+..|+.|+++||. +|
T Consensus 12 ~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~G-------------- 77 (444)
T PRK09669 12 IGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHG-------------- 77 (444)
T ss_pred HhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCC--------------
Confidence 3344555677777778888999999999999999999999999999999999999999994 25
Q ss_pred cch-HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588 120 GRF-RTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA 198 (540)
Q Consensus 120 ~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~ 198 (540)
|| +.++++.+...++.+++... |... .......+++...+.+++..+......++.+|+.++.
T Consensus 78 -rrrp~il~~~~~~~i~~~l~f~~---p~~~------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~ 141 (444)
T PRK09669 78 -QFRPYLLWFAIPFGVVCLLTFYT---PDFG------------ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDP 141 (444)
T ss_pred -CcchhHHHHHHHHHHHHHHHHhC---CCCC------------cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCH
Confidence 65 55556666666666554433 2110 1123444454555566666677777788899987543
Q ss_pred ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh-------ccCcchhhhHhHHHHHHHHHHH
Q 041588 199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQE-------QKGWSVGFGIPTAFTICSIIIV 255 (540)
Q Consensus 199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~-------~~g~~~~f~i~~~~~~~~~i~~ 255 (540)
+ +|.+..++.....++|+.+++.+...+.. ..||+..+.+.+++.++..++.
T Consensus 142 ~-----eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~ 200 (444)
T PRK09669 142 R-----ERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCC 200 (444)
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 3 27778888888888888777665443322 2357766666555554444433
No 92
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.48 E-value=5.8e-12 Score=126.41 Aligned_cols=117 Identities=18% Similarity=0.152 Sum_probs=102.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 041588 73 QSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPA 152 (540)
Q Consensus 73 ~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~ 152 (540)
-+..-+|.+-+.|.+...++.+..|.+||++ | ||++++++.+..++.+++.+.+
T Consensus 65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-G---------------Rkpvll~c~~~va~s~ll~~~S---------- 118 (451)
T KOG2615|consen 65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRY-G---------------RKPVLLACLIGVALSYLLWALS---------- 118 (451)
T ss_pred ccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-C---------------chHHHHHHHHHHHHHHHHHHHH----------
Confidence 3445688999999999999999999999999 9 9999999999999988888877
Q ss_pred CCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 041588 153 CKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQ 232 (540)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~ 232 (540)
.+...+.++|++.|+..|-. ...-++++|.+++++ |+.+++....+..+|..+||+++|++.
T Consensus 119 -----------~~F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla 180 (451)
T KOG2615|consen 119 -----------RNFAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLA 180 (451)
T ss_pred -----------HHHHHHHHHHHhhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHH
Confidence 34556777799999888754 566788999999977 999999999999999999999999998
Q ss_pred h
Q 041588 233 E 233 (540)
Q Consensus 233 ~ 233 (540)
+
T Consensus 181 ~ 181 (451)
T KOG2615|consen 181 Q 181 (451)
T ss_pred h
Confidence 7
No 93
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.47 E-value=4e-12 Score=133.70 Aligned_cols=176 Identities=12% Similarity=0.041 Sum_probs=129.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhc
Q 041588 39 WKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKL 118 (540)
Q Consensus 39 ~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~ 118 (540)
++..+..+...+.....++....++|.|+++++|++..+++.+.+...+...++.+++|+++||+ |
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g------------- 280 (393)
T PRK15011 215 RRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-G------------- 280 (393)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-------------
Confidence 34444444444555556666677899999999999999999888887777888899999999998 9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588 119 QGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA 198 (540)
Q Consensus 119 ~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~ 198 (540)
||+.+..+.....+....+... .+...+++.+++.+++.|...+...+...|.+|+
T Consensus 281 --~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~- 336 (393)
T PRK15011 281 --KRFLMRVAAVAGVCFYAGMLMA---------------------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG- 336 (393)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHH---------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-
Confidence 9998877665555444333322 1234445555555555555445555667788875
Q ss_pred ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588 199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG 258 (540)
Q Consensus 199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~ 258 (540)
+ ++++.++++...++|..++|.++|++.+..||+..|++..+..++++++.+..
T Consensus 337 ~------~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
T PRK15011 337 Q------AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI 390 (393)
T ss_pred C------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 3 78899998888999999999999999999999999988777777776666544
No 94
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.46 E-value=6.2e-11 Score=127.68 Aligned_cols=179 Identities=11% Similarity=0.032 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccch
Q 041588 43 PFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRF 122 (540)
Q Consensus 43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~ 122 (540)
..+....+.+.+. +.+...++.++.+++|++..+.+...+.......+-++ .|.++||+ +-.++ - ||
T Consensus 29 ~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~--r--------Rr 95 (468)
T TIGR00788 29 AIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGY--T--------KR 95 (468)
T ss_pred HHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCc--c--------ch
Confidence 3444467777787 77777888899999999999998888887777777665 99999998 41111 1 55
Q ss_pred HHHHHHHHHHH-HHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChH
Q 041588 123 RTLVVFSCIYS-VGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEK 201 (540)
Q Consensus 123 ~~i~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~ 201 (540)
+.++++.++.. ++...++.. ........+.+.+.+++.+....+..++..|..+ ++++
T Consensus 96 ~~l~~~~~l~~~~~~~~l~~~--------------------~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~ 154 (468)
T TIGR00788 96 WYLVLSGLLGSAILYGLLPGK--------------------VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS 154 (468)
T ss_pred HHHHHHHHHHHHHHHHhcccc--------------------cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC
Confidence 55566655542 222222111 0122333346678889988888999999999998 3321
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588 202 EAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG 258 (540)
Q Consensus 202 ~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~ 258 (540)
.++...++.|.+.++|..+++.++|++.+..||+..|++.++..++..+...+.
T Consensus 155 ---~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~ 208 (468)
T TIGR00788 155 ---AGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLS 208 (468)
T ss_pred ---cCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhc
Confidence 144566677888899999999999999999999999998877766664444343
No 95
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.46 E-value=3.2e-12 Score=138.53 Aligned_cols=180 Identities=13% Similarity=0.126 Sum_probs=128.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhh
Q 041588 38 GWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFK 117 (540)
Q Consensus 38 ~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~ 117 (540)
+++.....+...++....+|++..++|.|+++.+|++..+++.......++..++.+++|+++||+ |
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g------------ 314 (490)
T PRK10642 248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-G------------ 314 (490)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c------------
Confidence 444444444455667788999999999999989999988888777777888889999999999998 9
Q ss_pred cccchHHHHHHHHHHHHHHHH-HHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588 118 LQGRFRTLVVFSCIYSVGMVL-LTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD 196 (540)
Q Consensus 118 ~~~r~~~i~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~ 196 (540)
||+++.++.++..++.+. +.... ..+...+++++++.+++.++..+...++.++.+|
T Consensus 315 ---rr~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p 372 (490)
T PRK10642 315 ---RRPFVILGSVALFVLAIPAFILIN-------------------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFP 372 (490)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHh-------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999988887654433332 22221 0224456667777777666556667778889999
Q ss_pred CCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC-cchhhhHhHHHHHHHHHHHHhc
Q 041588 197 EADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG-WSVGFGIPTAFTICSIIIVAAG 258 (540)
Q Consensus 197 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g-~~~~f~i~~~~~~~~~i~~~~~ 258 (540)
++. |+++.++.+....+++.++|.+.+++.+..+ |+..+++..+..+++++..++.
T Consensus 373 ~~~------Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 429 (490)
T PRK10642 373 THI------RYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTM 429 (490)
T ss_pred Ccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence 987 9999998555566677889999999987654 6666655555555555544443
No 96
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.45 E-value=2.5e-12 Score=138.48 Aligned_cols=177 Identities=16% Similarity=0.051 Sum_probs=133.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+.+|.+.+..++....++++..++|.|+++++|++..+++.....+..+..++.+++|+++||+ |
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g-------------- 322 (467)
T PRK09556 258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-N-------------- 322 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C--------------
Confidence 5678888888888888899999999999999999999999999989999999999999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
||+.+.+...+..++..++.+.. ..+....++.+++.|++..+..........|.+|++.
T Consensus 323 -~r~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~ 382 (467)
T PRK09556 323 -GRRALVACIALALIIFTLGVYQH-------------------ATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA 382 (467)
T ss_pred -CCchHHHHHHHHHHHHHHHHHHh-------------------cCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh
Confidence 99887766544444332222221 0123334455555554333322223355679999877
Q ss_pred hHHHHhhhhhHHHHHHHHHH-HHHHHHHHHHhhhh------------ccCcchhhhHhHHHHHHHHHHHHh
Q 041588 200 EKEAIQKYVFFNWFFFAINM-GAIFGITVLVYIQE------------QKGWSVGFGIPTAFTICSIIIVAA 257 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~i-G~~i~p~v~~~l~~------------~~g~~~~f~i~~~~~~~~~i~~~~ 257 (540)
++++.++.+...++ |+.++|.+.|++.| ..||+.+|++..++.+++.+..+.
T Consensus 383 ------~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 383 ------IGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred ------HHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987 77999999999999 578999998887777776665543
No 97
>PRK09848 glucuronide transporter; Provisional
Probab=99.44 E-value=1.3e-10 Score=124.54 Aligned_cols=157 Identities=12% Similarity=0.048 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccch
Q 041588 43 PFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRF 122 (540)
Q Consensus 43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~ 122 (540)
+.-.+..+..+..+..+.++++.|+++.+|++..++|.+.....+...+..+++|+++||. |+ + .|||
T Consensus 11 ~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-~~----------~-~Gr~ 78 (448)
T PRK09848 11 VGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSV-NT----------R-WGKF 78 (448)
T ss_pred HhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecC-CC----------C-CcCc
Confidence 4444567777888888888999999999999999999999999999999999999999996 40 0 0166
Q ss_pred HHH-HHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChH
Q 041588 123 RTL-VVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEK 201 (540)
Q Consensus 123 ~~i-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~ 201 (540)
|.. +++.+...+..+++..... .. .........++...+.+++.+...++..++..++.++.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~- 143 (448)
T PRK09848 79 RPFLLFGTAPLMIFSVLVFWVPT--DW------------SHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQS- 143 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHhCcC--CC------------CcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHH-
Confidence 654 5565555544444322110 00 0011233344455667788888888888877776654331
Q ss_pred HHHhhhhhHHHHHHH-----HHHHHHHHHHHHHh
Q 041588 202 EAIQKYVFFNWFFFA-----INMGAIFGITVLVY 230 (540)
Q Consensus 202 ~~~~r~~~~~~~~~~-----~~iG~~i~p~v~~~ 230 (540)
|....++..++ .+++..++|.+.+.
T Consensus 144 ----r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~ 173 (448)
T PRK09848 144 ----RARLGAARGIAASLTFVCLAFLIGPSIKNS 173 (448)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555554433 34555666666554
No 98
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.43 E-value=5.3e-10 Score=117.34 Aligned_cols=178 Identities=12% Similarity=0.029 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHH--HHHHHHHHHHHHHHH-HHHhhhhcCCCcchhhhhhhhc
Q 041588 42 SPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTH--VTDWIGAAYVLTILG-AFLADAYLGQPALKHVHAIFKL 118 (540)
Q Consensus 42 ~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~--~~~~~~~~~~~~~~g-G~laD~~~G~~~~~~~~~~~~~ 118 (540)
...+....+.+.+.+....+.+|.|++ +.|.|..+.|+. ...+.....+..++. ++.+||+ |
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g------------- 67 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-G------------- 67 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-C-------------
Confidence 455666778888888888899999997 469999999997 355566665555444 7789997 9
Q ss_pred ccchHHHHHHHHH-HHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588 119 QGRFRTLVVFSCI-YSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE 197 (540)
Q Consensus 119 ~~r~~~i~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~ 197 (540)
|||..++...+ ..+....+.... +. ......++....+.++..+...+...++..|..++
T Consensus 68 --~r~~~i~~~~~~~~~~~~~~~~~~--~~---------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~ 128 (390)
T TIGR02718 68 --RRRSWVLPMQCLVSACLASLALVG--PD---------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNG 128 (390)
T ss_pred --cchhHHHHHHHHHHHHHHHHHcCC--cc---------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 99997666533 222222222111 11 01122233333444455555556666666665554
Q ss_pred CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcC
Q 041588 198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGF 259 (540)
Q Consensus 198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~ 259 (540)
++ ++.+.+...++..+|..+++.+.+++.++.||+..|++.++..++..+..+...
T Consensus 129 ~~------~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~ 184 (390)
T TIGR02718 129 RT------LAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLK 184 (390)
T ss_pred hh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 43 566667777788999999999999999999999999988877666555544443
No 99
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=3.4e-12 Score=128.77 Aligned_cols=152 Identities=14% Similarity=0.074 Sum_probs=136.8
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 041588 70 EMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLR 149 (540)
Q Consensus 70 ~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 149 (540)
.++.++++.|++.........+..++.|.+.||+ | +|-.+++|.+++...++++++..
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-G---------------y~ipm~~Gl~vmf~sTilFafg~------ 157 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-G---------------YKIPMVAGLFVMFLSTILFAFGN------ 157 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHHh-c---------------cccHHHHHHHHHHHHHHHHHHcc------
Confidence 4566788899999999999999999999999998 9 99999999999999999999873
Q ss_pred CCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041588 150 PPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLV 229 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~ 229 (540)
+++.++++|.++|+|.++...+-.++++|.||++++ |++++++.-.++.+|-.+||.++|
T Consensus 158 ---------------sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGG 217 (464)
T KOG3764|consen 158 ---------------SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGG 217 (464)
T ss_pred ---------------hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCccc
Confidence 477899999999999999999999999999999873 899999999999999999999999
Q ss_pred hhhhccCcchhhhHhHHHHHHHHHHHHhcCcccc
Q 041588 230 YIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYR 263 (540)
Q Consensus 230 ~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~ 263 (540)
.+.+..|++..|.+++++.++...+-++..+.++
T Consensus 218 ilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~ 251 (464)
T KOG3764|consen 218 ILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE 251 (464)
T ss_pred chHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc
Confidence 9999999999999999888887776555554433
No 100
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.41 E-value=6e-12 Score=129.99 Aligned_cols=171 Identities=15% Similarity=0.105 Sum_probs=134.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+..+.+....++..........+++.|. +++|.+..+++.....+.....++.+++|+++||+ |
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g-------------- 268 (377)
T TIGR00890 205 PQFWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-G-------------- 268 (377)
T ss_pred ccHHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h--------------
Confidence 3445555555555556555666667775 56899998899999999999999999999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
||+.+.++.++..++.+++..... .....++....+.+++.+...+..+++.+|.+|+++
T Consensus 269 -~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~ 328 (377)
T TIGR00890 269 -RQKTMSIVFGISAVGMAAMLFIPM-------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN 328 (377)
T ss_pred -hhhhhhHHHHHHHHHHHHHHHccc-------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh
Confidence 999999998888888777665421 112233445566777888777778888999998876
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHH
Q 041588 200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSI 252 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~ 252 (540)
|++.+++++...++|..++|.+.|++.++.||+..|.+.+++.++++
T Consensus 329 ------~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 329 ------SAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred ------hhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999988776665543
No 101
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.41 E-value=1.6e-10 Score=124.70 Aligned_cols=176 Identities=13% Similarity=0.028 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhh----hhcCCCcchhhhhhhhc
Q 041588 43 PFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLAD----AYLGQPALKHVHAIFKL 118 (540)
Q Consensus 43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD----~~~G~~~~~~~~~~~~~ 118 (540)
+.--+..+..++.+..+.++++.|+++.+|++...+|.+..+.-+...+..|+.|+++| |+ |
T Consensus 9 ~~yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-G------------- 74 (473)
T PRK10429 9 LSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-G------------- 74 (473)
T ss_pred HhhccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-C-------------
Confidence 33445667778888888999999999999999999999999999999999999999999 54 7
Q ss_pred ccc-hHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588 119 QGR-FRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE 197 (540)
Q Consensus 119 ~~r-~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~ 197 (540)
| |+.++++.+...+++.++... |.. ++......+++...+..++..+......++.+|+.++
T Consensus 75 --rrrp~il~g~i~~~i~~~llf~~---p~~------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~ 137 (473)
T PRK10429 75 --KFKPWILIGTLANSVVLFLLFSA---HLF------------EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLD 137 (473)
T ss_pred --CcchhHhhhhHHHHHHHHHHHcC---CCC------------CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCC
Confidence 7 555666777777776666432 110 0112233444445566778888888888999998754
Q ss_pred CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhc-------cCcchhhhHhHHHHHHHHHH
Q 041588 198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQ-------KGWSVGFGIPTAFTICSIII 254 (540)
Q Consensus 198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~-------~g~~~~f~i~~~~~~~~~i~ 254 (540)
.+ +|.+..++-....++|+.+.+.+...+.+. .||+....+.+++.+++.++
T Consensus 138 ~~-----eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~ 196 (473)
T PRK10429 138 KR-----EREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTII 196 (473)
T ss_pred HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 33 277888886777777766665554433221 24555544444444443333
No 102
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.40 E-value=1.1e-11 Score=129.76 Aligned_cols=153 Identities=12% Similarity=0.032 Sum_probs=132.1
Q ss_pred HHHHHHhhHhcCCChhH-HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHH
Q 041588 61 VNMTAYLVREMHQSLPT-AGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLL 139 (540)
Q Consensus 61 ~~l~~yl~~~lg~s~~~-a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l 139 (540)
++...|+.+++|++..+ .+.+.+.+..++.++.+++|+++||+ | .|+++.++.+.+.+..+++
T Consensus 46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G---------------~K~vL~l~~l~Wsl~t~L~ 109 (511)
T TIGR00806 46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-R---------------YKPVLVLQALSFVCVWLLL 109 (511)
T ss_pred HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-C---------------chHHHHHHHHHHHHHHHHH
Confidence 55667899999999999 99999999999999999999999998 9 9999999999999999999
Q ss_pred HHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHH
Q 041588 140 TVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINM 219 (540)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~i 219 (540)
+++. +...+.+.+++.|++.|+.. +...++..++|+++ |+++.++.+.+.++
T Consensus 110 ~fa~---------------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~v 161 (511)
T TIGR00806 110 LLGT---------------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLL 161 (511)
T ss_pred HHHH---------------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHH
Confidence 9873 47789999999999999988 88999999999887 99999999999999
Q ss_pred HHHHHHHHHHhhhhccCcchhhhH---hHHHHHHHHHHHHhc
Q 041588 220 GAIFGITVLVYIQEQKGWSVGFGI---PTAFTICSIIIVAAG 258 (540)
Q Consensus 220 G~~i~p~v~~~l~~~~g~~~~f~i---~~~~~~~~~i~~~~~ 258 (540)
|.++++.+++++ ..+||+.-+.+ ......+++++.++.
T Consensus 162 G~~Ia~~L~qll-~s~gWr~y~~Ln~Isl~s~~~a~~~a~~L 202 (511)
T TIGR00806 162 GVFLSSVLGQLL-VTLGWISYSTLNIISLVFMTFSVFLALFL 202 (511)
T ss_pred HHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999995 46788875543 444445555554443
No 103
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.39 E-value=4e-12 Score=132.09 Aligned_cols=173 Identities=17% Similarity=0.127 Sum_probs=131.8
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhh
Q 041588 36 TGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAI 115 (540)
Q Consensus 36 ~~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~ 115 (540)
+++++.++......++....++.+..++|.|+++++|.+..+++.......+...++.+++|+++||+ |
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g---------- 283 (394)
T TIGR00883 215 TKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-G---------- 283 (394)
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-c----------
Confidence 33344567777777888888998999999999989999999999999889999999999999999998 9
Q ss_pred hhcccchHHHHHHHHHHHHHH-HHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhcc
Q 041588 116 FKLQGRFRTLVVFSCIYSVGM-VLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQ 194 (540)
Q Consensus 116 ~~~~~r~~~i~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~ 194 (540)
||+.+..+..+..+.. .++.... . ..+...+++...+.+++.+...+...++.+|.
T Consensus 284 -----~~~~~~~~~~~~~~~~~~~~~~~~--~----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 340 (394)
T TIGR00883 284 -----RRPVLIIFTVLAALLAVPLLMALL--D----------------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPEL 340 (394)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHh--c----------------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 9998876655444332 2222110 0 01244555666777787877888889999999
Q ss_pred CCCCChHHHHhhhhhHHH-HHHHHHHHHHHHHHHHHhhhhccC-cchhhhHhHHHH
Q 041588 195 YDEADEKEAIQKYVFFNW-FFFAINMGAIFGITVLVYIQEQKG-WSVGFGIPTAFT 248 (540)
Q Consensus 195 ~~~~~~~~~~~r~~~~~~-~~~~~~iG~~i~p~v~~~l~~~~g-~~~~f~i~~~~~ 248 (540)
+|++. |+++++. +..+..+|+.++|.++|++.++.| |+..++..+++.
T Consensus 341 ~p~~~------~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 341 FPTEV------RYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred CCccc------eeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 99877 8888887 456667899999999999999888 877666544443
No 104
>PRK03699 putative transporter; Provisional
Probab=99.39 E-value=1.4e-11 Score=129.55 Aligned_cols=171 Identities=18% Similarity=0.199 Sum_probs=132.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+.++.+.+..++...+++++..++|.|+++++|++..+++.+.+.+.++..++.+++|+++||+ |
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~-------------- 269 (394)
T PRK03699 205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-D-------------- 269 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-c--------------
Confidence 4556666677777778888999999999999999999999999999999999999999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
||+++.....+..++..++... .+.....+..++.|++.+...+...+...+..+++
T Consensus 270 -~~~~l~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~- 326 (394)
T PRK03699 270 -LQRILTVLAGLALVLMYLFVNT---------------------DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA- 326 (394)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHc---------------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-
Confidence 9998887776666655444433 12233444556677766666677777777776644
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHH
Q 041588 200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIII 254 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~ 254 (540)
++...++.+.+.++|+.++|.+.|++.+..|++..|++..++.+++.+.
T Consensus 327 ------~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~ 375 (394)
T PRK03699 327 ------SPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVM 375 (394)
T ss_pred ------CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHH
Confidence 3455677778889999999999999999999999998766666555443
No 105
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.39 E-value=3.7e-11 Score=126.45 Aligned_cols=180 Identities=12% Similarity=-0.024 Sum_probs=139.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+..|.+.+..++...+++++..++|.|+.+ +|.+..+++...+.+.++..++.+++|+++||+ |
T Consensus 205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~-------------- 268 (393)
T PRK09705 205 PRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-D-------------- 268 (393)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-c--------------
Confidence 345666666677788888999999999976 899999999999999999999999999999997 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
||+.+.++..+..++..++.... .+.... ...+.+++.+...+.......+.+++++
T Consensus 269 -~~~~~~~~~~l~~~~~~~~~~~~--------------------~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 325 (393)
T PRK09705 269 -RRKLLMLALVLQLVGFCGFIWLP--------------------LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPA 325 (393)
T ss_pred -chHHHHHHHHHHHHHHHHHHHcc--------------------chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHH
Confidence 99999988877777766554321 111112 2235677777777777767777775432
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC-cchhhhHhHHHHHHHHHHHHhcCcccc
Q 041588 200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG-WSVGFGIPTAFTICSIIIVAAGFPYYR 263 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g-~~~~f~i~~~~~~~~~i~~~~~~~~~~ 263 (540)
++++.+++.+...++++.++|.+.|++.|+.| |...|++.+++.++.++......++.+
T Consensus 326 -----~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 326 -----IAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccc
Confidence 28899999999999999999999999999887 888888877777776666666555544
No 106
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.39 E-value=1.4e-11 Score=129.61 Aligned_cols=173 Identities=13% Similarity=0.077 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHH
Q 041588 49 EVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVF 128 (540)
Q Consensus 49 ~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~ 128 (540)
..+..+.++.+..+++.|+.+ .|++ +.+.....+.++..++.++.|+++||+ | |||.+..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~---------------~~~~~~~~ 285 (399)
T PRK05122 225 LALASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-G---------------GLRVAIVS 285 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-c---------------cHHHHHHH
Confidence 344456677777888888864 5653 445566677777888899999999998 9 99999888
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhh
Q 041588 129 SCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYV 208 (540)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~ 208 (540)
..+..++.+.+... .+...++++.++.|++.+...+.......|.+|++. |++
T Consensus 286 ~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~ 338 (399)
T PRK05122 286 LLVEILGLLLLWLA---------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGA 338 (399)
T ss_pred HHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHH
Confidence 88877777766654 134456667778888888777777777778887665 899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCccccccCC
Q 041588 209 FFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQKP 267 (540)
Q Consensus 209 ~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~ 267 (540)
++++++...++|..++|.+.|++.+..||+..|++.+++.+++++.....+++.+++.|
T Consensus 339 ~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (399)
T PRK05122 339 ALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAPRAVP 397 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence 99999999999999999999999999999999998888777777766666555444433
No 107
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.38 E-value=3.1e-10 Score=123.31 Aligned_cols=155 Identities=14% Similarity=0.135 Sum_probs=119.5
Q ss_pred HHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHH
Q 041588 61 VNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLT 140 (540)
Q Consensus 61 ~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~ 140 (540)
+....++.+++|-+ ....++.+.+.+...++.++.|.|||.+ | ||..++++.++.++|.+..+
T Consensus 64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-G---------------Rr~~~i~g~~l~vvG~Iv~a 126 (599)
T PF06609_consen 64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-G---------------RRYFFIIGSLLGVVGSIVCA 126 (599)
T ss_pred HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-c---------------chHHHHHHHHHHHhHHHHhh
Confidence 34456888899876 4566888889999999999999999997 9 99999999999999999988
Q ss_pred HhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHH
Q 041588 141 VSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMG 220 (540)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG 220 (540)
.+ ++...++.+..+.|+|.|... .....++|..|.+. |..+..+.....-+.
T Consensus 127 tA---------------------~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~ 178 (599)
T PF06609_consen 127 TA---------------------QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIIT 178 (599)
T ss_pred cC---------------------CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhh
Confidence 66 457788999999999977654 44556799998876 766666555544454
Q ss_pred HHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHH-HHhcCc
Q 041588 221 AIFGITVLVYIQEQKGWSVGFGIPTAFTICSIII-VAAGFP 260 (540)
Q Consensus 221 ~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~-~~~~~~ 260 (540)
..++|.++..+..+.+|||.|++.++...++++. +++.+|
T Consensus 179 ~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~P 219 (599)
T PF06609_consen 179 TWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFP 219 (599)
T ss_pred hcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCC
Confidence 5566777766666678999999988876666554 334444
No 108
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.38 E-value=2.5e-11 Score=125.99 Aligned_cols=173 Identities=13% Similarity=0.037 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccc
Q 041588 42 SPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGR 121 (540)
Q Consensus 42 ~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r 121 (540)
.+.+....++.....+....++|.|+.+++|.+..+++.+.....+...++.+++|+++||+ | |
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g---------------~ 264 (375)
T TIGR00899 201 TRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-G---------------K 264 (375)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-c---------------c
Confidence 34344444444444555667789999999999999998888777777778889999999998 9 9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChH
Q 041588 122 FRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEK 201 (540)
Q Consensus 122 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~ 201 (540)
|+++.++.++..++...+... .+.+.+++...+.+++.+...+...++..|..|++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~--- 320 (375)
T TIGR00899 265 RRLMLLAALAGVAFYTGLAAD---------------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR--- 320 (375)
T ss_pred hhHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch---
Confidence 999988776655554444433 13444555666777777776677777778887653
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588 202 EAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG 258 (540)
Q Consensus 202 ~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~ 258 (540)
++++.++++...++|..++|.+.|++.+..||+..|++.+++.+++.++....
T Consensus 321 ----~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 373 (375)
T TIGR00899 321 ----AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLI 373 (375)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhee
Confidence 56889999999999999999999999999999999998888777776665443
No 109
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.37 E-value=1.3e-11 Score=132.32 Aligned_cols=180 Identities=14% Similarity=0.121 Sum_probs=125.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+.+|...+..++....+|++..++|.|++++.|++..+++.....+.....++.+++|+++||+ + .
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~-~-------------~ 318 (452)
T PRK11273 253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-F-------------R 318 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-c-------------c
Confidence 5577777888888888899999999999999999999998888888888889999999999997 4 0
Q ss_pred cchHHH-HHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588 120 GRFRTL-VVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA 198 (540)
Q Consensus 120 ~r~~~i-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~ 198 (540)
+||+.. +....+..++.+.+.... . .+....++.+.+.+.+..........+..|.+|++
T Consensus 319 ~r~~~~~~~~~~l~~~~~~~~~~~~---~----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~ 379 (452)
T PRK11273 319 GNRGATGVFFMTLVTIATIVYWLNP---A----------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKK 379 (452)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhc---c----------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChh
Confidence 044332 222233333333322210 0 12222333334444433222223345567888887
Q ss_pred ChHHHHhhhhhHHHHHHHHHHHHHH-HHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588 199 DEKEAIQKYVFFNWFFFAINMGAIF-GITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG 258 (540)
Q Consensus 199 ~~~~~~~r~~~~~~~~~~~~iG~~i-~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~ 258 (540)
. |+++.++.+...++|+.+ +|.+.|++.|+.||+..|+++.+..+++++.....
T Consensus 380 ~------~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 434 (452)
T PRK11273 380 A------AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 434 (452)
T ss_pred h------hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 7 999999999888898765 79999999999999999998887777766655443
No 110
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.37 E-value=6.6e-11 Score=125.97 Aligned_cols=179 Identities=10% Similarity=0.061 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhh----hhcCCCcchhhhhhhhcccchHH
Q 041588 49 EVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLAD----AYLGQPALKHVHAIFKLQGRFRT 124 (540)
Q Consensus 49 ~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD----~~~G~~~~~~~~~~~~~~~r~~~ 124 (540)
.+.....+.....+++.|+++.+|++...++.+..+..+...+..|+.|+++| |+ | |||.
T Consensus 10 ~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-G---------------rrrp 73 (428)
T PF13347_consen 10 DLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-G---------------RRRP 73 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-c---------------ccce
Confidence 46666777777789999999999999999999999999999999999999999 65 7 6655
Q ss_pred HH-HHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHH
Q 041588 125 LV-VFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEA 203 (540)
Q Consensus 125 i~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~ 203 (540)
.+ ++.++..++++++.... |.. -........+.+...+..++......+..++.+|..++.+
T Consensus 74 ~~l~g~i~~~~~~~llf~~~--p~~-----------~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~---- 136 (428)
T PF13347_consen 74 WILIGAILLALSFFLLFSPP--PAG-----------LSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD---- 136 (428)
T ss_pred EeehhhHHHHHHHHHhhccc--cch-----------hhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHh----
Confidence 55 67777888777776430 100 0011233444566666788888899999999999987654
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhhhhcc-------CcchhhhHhHHHHHHHHHHHHhcCcc
Q 041588 204 IQKYVFFNWFFFAINMGAIFGITVLVYIQEQK-------GWSVGFGIPTAFTICSIIIVAAGFPY 261 (540)
Q Consensus 204 ~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~-------g~~~~f~i~~~~~~~~~i~~~~~~~~ 261 (540)
+|....++.....++|.++...+.+.+.+.. +|++...+.+++.+++.++..+..|+
T Consensus 137 -~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 137 -ERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred -hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 2788888887888888766655555544322 57777776666666655555554444
No 111
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.37 E-value=2.1e-11 Score=129.99 Aligned_cols=182 Identities=12% Similarity=0.007 Sum_probs=123.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+.+|.+.+..++....++++..++|.|+.+++|++..+++...+.+.++..++.+++|+++||+.+ +
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~-~------------ 309 (434)
T PRK11663 243 PYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFN-G------------ 309 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcc-C------------
Confidence 456777777777777888888999999988899999999999999999999999999999999732 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
+|++......+...++...+... +. .+.....+..+++|++............+|.+|++.
T Consensus 310 ~r~~~~~~~~~~~~~~~~~~~~~---~~----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 370 (434)
T PRK11663 310 NRGPMNLIFAAGILLSVGSLWLM---PF----------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA 370 (434)
T ss_pred CccHHHHHHHHHHHHHHHHHHHc---cc----------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh
Confidence 02232222222222222222111 10 112222222223333222222223445678887665
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcC
Q 041588 200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGF 259 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~ 259 (540)
|++..++.+...++|+.++|.+.|++.|..||+..|++.+++.+++.++.+...
T Consensus 371 ------~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 424 (434)
T PRK11663 371 ------AGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFL 424 (434)
T ss_pred ------HHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888777766665554433
No 112
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.37 E-value=2.6e-11 Score=125.69 Aligned_cols=180 Identities=15% Similarity=0.021 Sum_probs=129.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+.++..++..++....++.+..+++.|+.+.+|.+..+++.+.....+...++.+++|+++||+ |
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~-------------- 279 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-L-------------- 279 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-h--------------
Confidence 5667778888888899999999999999999999999999999999999999999999999998 8
Q ss_pred cchHH-HHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588 120 GRFRT-LVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA 198 (540)
Q Consensus 120 ~r~~~-i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~ 198 (540)
||+. +........++.+........... ..... ..+...+.+.+..+..+...++.+|.+|++
T Consensus 280 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (399)
T TIGR00893 280 -RRGKSLVFARKTAIIAGLVLSLLMFATNY--------------VNIPY-AALALVALGFFGLGAGAIGWALISDNAPGN 343 (399)
T ss_pred -hcccchhHHHHHHHHHHHHHHHHHHHhcc--------------chhHH-HHHHHHHHHHhchhhhhHHHHHHHhhcChh
Confidence 7752 111111111211111111000000 01122 222333333333336788899999999987
Q ss_pred ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC-cchhhhHhHHHHHHHHHHHH
Q 041588 199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG-WSVGFGIPTAFTICSIIIVA 256 (540)
Q Consensus 199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g-~~~~f~i~~~~~~~~~i~~~ 256 (540)
+ |++.+++++...++|+.++|.+.|++.+..| |...|.+.+++.+++.++.+
T Consensus 344 ~------~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 344 I------AGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred H------HHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 7 9999999999999999999999999999988 99999887777666655543
No 113
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.36 E-value=2.1e-09 Score=113.08 Aligned_cols=115 Identities=17% Similarity=0.090 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHH
Q 041588 45 IIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRT 124 (540)
Q Consensus 45 i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~ 124 (540)
+....++..+++-...++++.|+.+ .|+|..+.|.+.+...+...+.+++.|+++||... ++|.
T Consensus 7 Ls~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~---------------~~~~ 70 (400)
T PF03825_consen 7 LSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGS---------------AKRI 70 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---------------HHHH
Confidence 4455566666666677899999975 78999999999999999999999999999999855 6777
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588 125 LVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD 196 (540)
Q Consensus 125 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~ 196 (540)
+.+..++..+.+...... .+.+.++...++..+......|...++.-+...
T Consensus 71 l~~~~l~~~~~~~~~~~~---------------------~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~ 121 (400)
T PF03825_consen 71 LALLSLLSALALLLLAFS---------------------SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG 121 (400)
T ss_pred HHHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 777666655555444433 234555555666777777767777776665554
No 114
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.36 E-value=4.6e-11 Score=121.83 Aligned_cols=173 Identities=17% Similarity=0.245 Sum_probs=148.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccc
Q 041588 41 ASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQG 120 (540)
Q Consensus 41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~ 120 (540)
..+...+..++....+.....+++.|+.+.+|.+..+.+........+..++.++.|+++||+ |
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~--------------- 239 (352)
T cd06174 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-G--------------- 239 (352)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---------------
Confidence 344455556667777777888899999888899999999999999999999999999999998 9
Q ss_pred chH-HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 121 RFR-TLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 121 r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
||+ .+..+..+..++.+.+.... +....++...+.+++.+...+...++..|..|+++
T Consensus 240 ~~~~~~~~~~~~~~i~~~~~~~~~---------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 298 (352)
T cd06174 240 RRRLLLLIGLLLAALGLLLLALAP---------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEA 298 (352)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhc---------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH
Confidence 999 99999988888888877652 35667778889999999999999999999998865
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHH
Q 041588 200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVA 256 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~ 256 (540)
|++.++.++...++|..++|.+.+++.+..||+..|.+.++..+++.+...
T Consensus 299 ------~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 299 ------RGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 999999999999999999999999999989999999988887777666543
No 115
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.35 E-value=1.3e-09 Score=110.91 Aligned_cols=134 Identities=16% Similarity=0.167 Sum_probs=116.9
Q ss_pred HHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHH
Q 041588 60 AVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLL 139 (540)
Q Consensus 60 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l 139 (540)
.-.+...+++.++++..+++.+-..+.+++.+..+..|++.+|+ | +|+.++.|..++++|..++
T Consensus 32 ~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-g---------------yk~gi~lgL~l~avg~~lF 95 (422)
T COG0738 32 NDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-G---------------YKAGIVLGLLLYAVGAALF 95 (422)
T ss_pred chhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-h---------------hHHHHHHHHHHHHHHHHHH
Confidence 34566778889999999999999999999999999999999998 9 9999999999999998888
Q ss_pred HHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHH
Q 041588 140 TVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINM 219 (540)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~i 219 (540)
.-++ +...+..++.++++++.|.+..+.+..++++++.+++. ...-.++......+
T Consensus 96 ~pAa------------------~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~fn~l 151 (422)
T COG0738 96 WPAA------------------SSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQAFNGL 151 (422)
T ss_pred hhhh------------------hhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHHhhhh
Confidence 6443 22468889999999999999999999999999998865 34456677778889
Q ss_pred HHHHHHHHHHhhhh
Q 041588 220 GAIFGITVLVYIQE 233 (540)
Q Consensus 220 G~~i~p~v~~~l~~ 233 (540)
|+.++|.+++++..
T Consensus 152 Ga~~gp~~g~~lil 165 (422)
T COG0738 152 GAILGPLLGSSLIL 165 (422)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998766
No 116
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.34 E-value=4.2e-10 Score=119.38 Aligned_cols=141 Identities=12% Similarity=0.138 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCC
Q 041588 79 GTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPC 158 (540)
Q Consensus 79 ~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 158 (540)
+.+++++.++..++..++|+++||+ | ||..++++.++..++.++...+-..
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~-G---------------RK~~l~~~~~l~~~~~~~~~~s~~~------------- 113 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRF-G---------------RKNALLLSNLLAVLAALLMGLSKSA------------- 113 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-c---------------chHHHHHHHHHHHHHHHHHHHHHHh-------------
Confidence 5678889999999999999999998 9 9999999999888888888776432
Q ss_pred ccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHH-Hhhh-hccC
Q 041588 159 VEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVL-VYIQ-EQKG 236 (540)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~-~~l~-~~~g 236 (540)
+....+.++|++.|+..|......+-++.|.-|++- ||..-.....+.++|-.++..++ ..+. ....
T Consensus 114 -----~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~ 182 (485)
T KOG0569|consen 114 -----PSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDL 182 (485)
T ss_pred -----hhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcc
Confidence 347889999999999999999999999999999987 88888888889999998885543 3333 3446
Q ss_pred cchhhhHhHHHHHHHHHHHHhcC
Q 041588 237 WSVGFGIPTAFTICSIIIVAAGF 259 (540)
Q Consensus 237 ~~~~f~i~~~~~~~~~i~~~~~~ 259 (540)
|++.+....+..++.+++..+..
T Consensus 183 W~~l~~~~~i~~~~~l~~l~~~P 205 (485)
T KOG0569|consen 183 WPYLLAFPLIPALLQLALLPFLP 205 (485)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999888887776666655543
No 117
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.34 E-value=1.4e-10 Score=125.35 Aligned_cols=175 Identities=12% Similarity=0.080 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 43 PFIIVNEVAERLAFFAIAV---NMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 43 ~~i~~~~~~~~~~~y~~~~---~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
|.+.++.|+.+...+++.. .+-..+.++++.+..+++++.++..+...+..++.+.+.||+ |
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g-------------- 109 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-G-------------- 109 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-C--------------
Confidence 6677777777777776632 334566788999999999999999999999999999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHH-HHHHHhcCCCccchhhhhhccCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCAL-GLIALGTRDIKPCVSSFGADQYDEA 198 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~g~g~~~~~~~~~~~d~~~~~ 198 (540)
.|++.++|.++..+|+++..++. +.+.+++.. ++.|+|.|+.......+++..|+++
T Consensus 110 -~R~v~i~G~~v~~~g~~lssF~~---------------------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk 167 (509)
T KOG2504|consen 110 -CRTVMIAGGLVAALGLLLSSFAT---------------------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK 167 (509)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHh---------------------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH
Confidence 99999999999999999999883 456666665 4578999988888888888777664
Q ss_pred ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCcc
Q 041588 199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPY 261 (540)
Q Consensus 199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~ 261 (540)
|+.+.++-..+..+|..+-|.+.-++.+.+||+..+++...+.+-.++.....+|.
T Consensus 168 -------R~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~ 223 (509)
T KOG2504|consen 168 -------RALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPL 223 (509)
T ss_pred -------HHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888899999999999999999999999998777765555555555553
No 118
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=99.34 E-value=4.3e-10 Score=122.67 Aligned_cols=134 Identities=16% Similarity=0.259 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCC
Q 041588 77 TAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKER 156 (540)
Q Consensus 77 ~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 156 (540)
+.+++.+...+++.++.++.|.++|++ | ||++++++.+++.+|.++.+.+
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-G---------------Rk~~l~~~~~~~~iG~ii~~~a-------------- 139 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRI-G---------------RKKTLLLAVVLFLIGAIIIALA-------------- 139 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-h---------------hHHHHHHHHHHHHHHHHHHHHh--------------
Confidence 348999999999999999999999998 9 9999999999999999999988
Q ss_pred CCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhc--
Q 041588 157 PCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQ-- 234 (540)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~-- 234 (540)
.+...++++|++.|+|.|+.....+.+.+|.-|++. |+...+.+.++.++|..++.. .++..++
T Consensus 140 -------~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~-~~~~~~~~~ 205 (513)
T KOG0254|consen 140 -------PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYC-INYGTSKVY 205 (513)
T ss_pred -------hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHH-HhhhhccCC
Confidence 368899999999999999999999999999999887 999999999999999988844 4444444
Q ss_pred cCcchhhhHhHHHHHHHHHH
Q 041588 235 KGWSVGFGIPTAFTICSIII 254 (540)
Q Consensus 235 ~g~~~~f~i~~~~~~~~~i~ 254 (540)
.+||..+++..+..++..+.
T Consensus 206 ~~Wr~~~~~~~i~~~~~~~~ 225 (513)
T KOG0254|consen 206 AGWRIPLGLALIPAVILALG 225 (513)
T ss_pred ccHHHHHHHHHHHHHHHHHH
Confidence 48998888766665555555
No 119
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.31 E-value=5.2e-11 Score=127.16 Aligned_cols=180 Identities=12% Similarity=0.067 Sum_probs=124.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+.+|...+..++....+|++..++|.|+++..|++..+++.....+.+...++.+++|+++||+ |
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~-------------- 315 (438)
T TIGR00712 251 KLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-F-------------- 315 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-c--------------
Confidence 4567777777777788889999999999998999999999999888889999999999999998 6
Q ss_pred cchHHHHHHHHHHHH---HHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588 120 GRFRTLVVFSCIYSV---GMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD 196 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~ 196 (540)
+++....+..+..+ +.+.+... +. .+........++.+.+..+..........|.+|
T Consensus 316 -~~~~~~~~~~~~~~~~~~~~~~~~~---~~----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 375 (438)
T TIGR00712 316 -KGNRGATGVFFMTLVTIAVIVYWMN---PA----------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAP 375 (438)
T ss_pred -cCcccHHHHHHHHHHHHHHHHHHhc---CC----------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcC
Confidence 54433333322221 11111111 00 112222333334444332222222345678888
Q ss_pred CCChHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588 197 EADEKEAIQKYVFFNWFFFAINMGA-IFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFP 260 (540)
Q Consensus 197 ~~~~~~~~~r~~~~~~~~~~~~iG~-~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~ 260 (540)
++. |+++.++++...++|+ +++|.+.|++.|+.||..+|++.+++.+++.+..++..+
T Consensus 376 ~~~------~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 434 (438)
T TIGR00712 376 KKA------AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 434 (438)
T ss_pred hhh------eeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 776 8999999998888875 689999999999999999998877777777666655444
No 120
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.31 E-value=5.7e-11 Score=125.13 Aligned_cols=171 Identities=10% Similarity=-0.022 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccch
Q 041588 43 PFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRF 122 (540)
Q Consensus 43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~ 122 (540)
+.+....++....++.+..++|.|+.+ .|++..+++.......++..++.+++|+++||+ | ||
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g---------------~~ 285 (406)
T PRK11551 223 LLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-R---------------PR 285 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-h---------------HH
Confidence 444444555566777788889999875 799999999999999999999999999999998 9 99
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHH
Q 041588 123 RTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKE 202 (540)
Q Consensus 123 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~ 202 (540)
+.+..+.+...++.+.+... .+...+.+..++.+++.++..+...++..|.+|+++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~--- 341 (406)
T PRK11551 286 RVVLLIYAGILASLAALAAA---------------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV--- 341 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhc---------------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh---
Confidence 99888766666665555433 123344455566777777777888889999999887
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC-cchhhhHhHHHHHHHHHHHHh
Q 041588 203 AIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG-WSVGFGIPTAFTICSIIIVAA 257 (540)
Q Consensus 203 ~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g-~~~~f~i~~~~~~~~~i~~~~ 257 (540)
|+++.++++....+|+.++|.+.|++.++.+ |...+++...+.+++.+..+.
T Consensus 342 ---~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (406)
T PRK11551 342 ---RGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL 394 (406)
T ss_pred ---hhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988754 555665555555555444433
No 121
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.30 E-value=2.4e-11 Score=128.91 Aligned_cols=172 Identities=13% Similarity=0.094 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhc---CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 43 PFIIVNEVAERLAFFAIAVNMTAYLVREM---HQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~l---g~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+.+++..++....+.....+++.|+.+.+ +.+..+.+.+.++......++.+++|+++||+ |
T Consensus 226 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g-------------- 290 (420)
T PRK09528 226 WFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-G-------------- 290 (420)
T ss_pred EeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------------
Confidence 33333334444444445556778877543 55666778888888888889999999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
||+.+.++.++..++..++.+. .+...+++...+.+++.+...+....+..|.+|++.
T Consensus 291 -~~~~~~~~~~l~~~~~~l~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 348 (420)
T PRK09528 291 -AKNALLLAGTIMAVRIIGSGFA---------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL 348 (420)
T ss_pred -cchhhHHHHHHHHHHHHHHHhc---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 9999999988888887777665 234556666777777777666667778888888766
Q ss_pred hHHHHhhhhhHHH-HHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588 200 EKEAIQKYVFFNW-FFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAA 257 (540)
Q Consensus 200 ~~~~~~r~~~~~~-~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~ 257 (540)
+++.++. ++.+.++|++++|.+.|++.|..||+..|.+.+++.++..++.+.
T Consensus 349 ------~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 401 (420)
T PRK09528 349 ------SATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVF 401 (420)
T ss_pred ------eeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence 7777665 677889999999999999999999999999877766555544433
No 122
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.30 E-value=4.9e-11 Score=124.78 Aligned_cols=159 Identities=14% Similarity=0.090 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccch
Q 041588 43 PFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRF 122 (540)
Q Consensus 43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~ 122 (540)
..+.....+.....+++..++|.|+.+++|++..+++.+.....++..++.++.|+++||+ | ||
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g---------------~~ 304 (405)
T TIGR00891 241 VYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-G---------------RR 304 (405)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C---------------ch
Confidence 3334444445555666778899999999999999999999999999999999999999998 9 99
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHH
Q 041588 123 RTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKE 202 (540)
Q Consensus 123 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~ 202 (540)
+.+.++.++..+..+.+.... .+...+.++..+.++..++..+...++..|.+|++.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 361 (405)
T TIGR00891 305 KAYVCSLLAGQLLIIPVFAIG--------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ--- 361 (405)
T ss_pred hhhHHHHHHHHHHHHHHHHhC--------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch---
Confidence 998888765533222222110 123444455555666666666778888999998876
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC-cchhhhH
Q 041588 203 AIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG-WSVGFGI 243 (540)
Q Consensus 203 ~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g-~~~~f~i 243 (540)
|++.+++.+...++|+.++|.+.|++.|+.| |+..+..
T Consensus 362 ---~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 362 ---RAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred ---hHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 9999999999999999999999999999988 8776654
No 123
>PRK11462 putative transporter; Provisional
Probab=99.30 E-value=9e-09 Score=110.72 Aligned_cols=177 Identities=13% Similarity=0.151 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh---cCCCcchhhhhhhhcc
Q 041588 43 PFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAY---LGQPALKHVHAIFKLQ 119 (540)
Q Consensus 43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~---~G~~~~~~~~~~~~~~ 119 (540)
+.--+..+..++.+..+..++..|+++.+|++...+|.+..+.-+.-.+.-|+.|+++||. +|
T Consensus 12 ~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~G-------------- 77 (460)
T PRK11462 12 IGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWG-------------- 77 (460)
T ss_pred HhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCC--------------
Confidence 3344566777888888889999999999999999999999999999999999999999984 35
Q ss_pred cch-HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588 120 GRF-RTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA 198 (540)
Q Consensus 120 ~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~ 198 (540)
|| +-++++.+...++++++... |... .......+++...+..++..+......++.+++-++.
T Consensus 78 -r~rp~il~g~i~~~i~~~llf~~---p~~s------------~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~ 141 (460)
T PRK11462 78 -KFRPWVLFGALPFGIVCVLAYST---PDLS------------MNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDP 141 (460)
T ss_pred -CcchhHhHHHHHHHHHHHHHHhC---CCCC------------cchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCH
Confidence 55 55556667777777666543 2110 1122334444555667888888888889999987654
Q ss_pred ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhcc-------CcchhhhHhHHHHHHHHHH
Q 041588 199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQK-------GWSVGFGIPTAFTICSIII 254 (540)
Q Consensus 199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~-------g~~~~f~i~~~~~~~~~i~ 254 (540)
+ +|.+..++...+.++|+.+++.+...+.+.. ||.....+.+++.+++.++
T Consensus 142 ~-----eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i 199 (460)
T PRK11462 142 T-----QRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAF 199 (460)
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 4 2888999988888988887777654443322 4555554444444344333
No 124
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.29 E-value=8.1e-11 Score=123.81 Aligned_cols=171 Identities=13% Similarity=0.044 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhcCCChh---HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccc
Q 041588 45 IIVNEVAERLAFFAIAVNMTAYLVREMHQSLP---TAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGR 121 (540)
Q Consensus 45 i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~---~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r 121 (540)
++...++.......+.++++.|+.+..+.... ..+.+..++.+...++.+..|+++||+ | |
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g---------------~ 287 (408)
T PRK09874 224 LFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-G---------------P 287 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c---------------c
Confidence 33334444555556677788888765443222 234555556667778888999999998 9 9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChH
Q 041588 122 FRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEK 201 (540)
Q Consensus 122 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~ 201 (540)
|+++..+..+..++.+.+... .+.+.+++..++.|++.+...+...+...+..|++.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-- 344 (408)
T PRK09874 288 EKILITALIFSVLLLIPMSFV---------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI-- 344 (408)
T ss_pred chhHHHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc--
Confidence 999999888777766665543 134556677778899998888888888888877766
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588 202 EAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG 258 (540)
Q Consensus 202 ~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~ 258 (540)
+++.+++++...++|..++|.++|++.+..||+..|++.+++.+++.+.....
T Consensus 345 ----~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 397 (408)
T PRK09874 345 ----AGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNS 397 (408)
T ss_pred ----ceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999998888777776665443
No 125
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.29 E-value=8.5e-11 Score=131.89 Aligned_cols=136 Identities=15% Similarity=0.127 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccC
Q 041588 82 VTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEV 161 (540)
Q Consensus 82 ~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 161 (540)
..+..++..++.+++|+++||+ | ||++++++.++.+++.+++++..
T Consensus 601 ~~l~~l~~i~G~il~g~L~Dr~-G---------------Rr~~l~~~~~lsai~~ll~~~~~------------------ 646 (742)
T TIGR01299 601 NFLGTLAVLPGNIVSALLMDKI-G---------------RLRMLAGSMVLSCISCFFLSFGN------------------ 646 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-C---------------CHHHHHHHHHHHHHHHHHHHHHc------------------
Confidence 4445577788999999999998 9 99999999988888888777652
Q ss_pred CCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhh
Q 041588 162 NGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGF 241 (540)
Q Consensus 162 ~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f 241 (540)
+...+++.+++.+++.++..+...++.+|++|++. |++++++.+....+|++++|.+++++.+. +....|
T Consensus 647 ---s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf 716 (742)
T TIGR01299 647 ---SESAMIALLCLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPI 716 (742)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHH
Confidence 23344455556666666677888899999999987 99999999999999999999999988764 456677
Q ss_pred hHhHHHHHHHHHHHHhcCccc
Q 041588 242 GIPTAFTICSIIIVAAGFPYY 262 (540)
Q Consensus 242 ~i~~~~~~~~~i~~~~~~~~~ 262 (540)
++++++.+++.++.+.. |+.
T Consensus 717 ~i~a~~lll~~ll~~~L-PET 736 (742)
T TIGR01299 717 LFASAALACGGLLALKL-PDT 736 (742)
T ss_pred HHHHHHHHHHHHHHHhC-CCC
Confidence 77777766666655444 443
No 126
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.29 E-value=6.4e-11 Score=125.76 Aligned_cols=180 Identities=7% Similarity=0.059 Sum_probs=135.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCC--------hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhh
Q 041588 41 ASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQS--------LPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHV 112 (540)
Q Consensus 41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s--------~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~ 112 (540)
.++..++..++..........+++.|+.+ .|.+ ....+...++..+...++.++.|+++||+ |
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g------- 279 (418)
T TIGR00889 209 RMAIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-G------- 279 (418)
T ss_pred CeeeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-C-------
Confidence 33445555555555555556777888764 4544 35568888888888889999999999998 9
Q ss_pred hhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhh
Q 041588 113 HAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGA 192 (540)
Q Consensus 113 ~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~ 192 (540)
||+++.++.++..++..++..... +......+++..++.+++.+...++...+++
T Consensus 280 --------~r~~l~~~~~~~~v~~~l~~~~~~-----------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~ 334 (418)
T TIGR00889 280 --------IKKVMLLSLVAWALRFGFFAYGDP-----------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVE 334 (418)
T ss_pred --------cHHHHHHHHHHHHHHHHHHHHcCc-----------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888766665310 0012345666778888888888888888999
Q ss_pred ccCCCCChHHHHhhhhhHHHHH-HHHHHHHHHHHHHHHhhhhc------cCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588 193 DQYDEADEKEAIQKYVFFNWFF-FAINMGAIFGITVLVYIQEQ------KGWSVGFGIPTAFTICSIIIVAAGFP 260 (540)
Q Consensus 193 d~~~~~~~~~~~~r~~~~~~~~-~~~~iG~~i~p~v~~~l~~~------~g~~~~f~i~~~~~~~~~i~~~~~~~ 260 (540)
|.+|+++ |++++++++ ...++|+.++|.++|++.++ .||+..|.+.+++.+++.+++.+..+
T Consensus 335 ~~~p~~~------~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 335 KEVPVHI------RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred HHCCHHH------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999876 999999987 56789999999999999987 46999998877776666665555444
No 127
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.29 E-value=1.3e-09 Score=113.40 Aligned_cols=181 Identities=12% Similarity=0.006 Sum_probs=111.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+..|......+...+++-...++++.+++++.|++.++.|.+.+.......+.+++.|.++||+ |
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g-------------- 71 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-G-------------- 71 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-T--------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-h--------------
Confidence 5777778888888888888899999999999999999999999999999999999999999998 8
Q ss_pred cchHHHHHHHHHHHH--HHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588 120 GRFRTLVVFSCIYSV--GMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE 197 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~ 197 (540)
.||.+++...+..+ +-.+...- .|.++ .-++++.++.++..+....+..+.. |.+-+
T Consensus 72 -~kK~Ll~~i~~l~~l~~pff~~v~--~pll~-----------------~n~~lg~iig~i~l~~~f~~~~~~~-Ea~~e 130 (412)
T PF01306_consen 72 -LKKHLLWFIAILLLLFGPFFIYVF--GPLLQ-----------------SNFWLGAIIGGIYLGLVFNAGVPLS-EAYAE 130 (412)
T ss_dssp -TCSHHHHHHHHHHHTCHHHHHHTH--HHHHH-----------------TT-HHHHHHTTTTTTTTTTTHHHHH-HHHHH
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHH--HHHHH-----------------HHHHHHHHHHHHHHHHHHcccchHH-HHHHH
Confidence 77766555433222 22222111 01100 0123333333444443333333322 44433
Q ss_pred CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588 198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFP 260 (540)
Q Consensus 198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~ 260 (540)
+.+ ++.+-=+|---..+.+|.+++..++|++.+ .+-...|+++.+..++..++.+..++
T Consensus 131 r~s---r~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~ 189 (412)
T PF01306_consen 131 RVS---RRNGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKP 189 (412)
T ss_dssp HHH---HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS--
T ss_pred HHH---HHhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCC
Confidence 221 123333555667888999999999999876 45567888766655555444444443
No 128
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.28 E-value=7e-11 Score=114.01 Aligned_cols=168 Identities=15% Similarity=0.113 Sum_probs=136.6
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhh
Q 041588 36 TGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAI 115 (540)
Q Consensus 36 ~~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~ 115 (540)
......+|.+...+++..++++-+.+.-+.++++.+|+|...++.+.+...+...+..++.|.++|++ |
T Consensus 260 ~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G---------- 328 (459)
T KOG4686|consen 260 NTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-G---------- 328 (459)
T ss_pred cccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-c----------
Confidence 33446789999999999999998888899999999999999999999999999999999999999998 9
Q ss_pred hhcccchHHHHHHHH-HHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhcc
Q 041588 116 FKLQGRFRTLVVFSC-IYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQ 194 (540)
Q Consensus 116 ~~~~~r~~~i~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~ 194 (540)
|+-..+.+.+ ...++...+.++ ...-+.+..++|+.........++.++..
T Consensus 329 -----~n~~wv~~a~~~tl~~H~~l~Ft-----------------------~lsPy~~m~~lGLsysllAcslWP~va~~ 380 (459)
T KOG4686|consen 329 -----FNLWWVASACILTLLGHSGLFFT-----------------------FLSPYTSMTFLGLSYSLLACSLWPCVASL 380 (459)
T ss_pred -----ceehhHHHHHHHHHHHhhhHHhh-----------------------hccHHHHHHHHhhhHHHHHHHHhhhhhhh
Confidence 8877776665 455566666665 22345677788888777766678888888
Q ss_pred CCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC---cchhhhHhHHHH
Q 041588 195 YDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG---WSVGFGIPTAFT 248 (540)
Q Consensus 195 ~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g---~~~~f~i~~~~~ 248 (540)
.|+++ .+++++..+...|+|-.+.|+++|.+.|+-| |--+|.+....+
T Consensus 381 vpE~q------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~ 431 (459)
T KOG4686|consen 381 VPEEQ------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLM 431 (459)
T ss_pred CCHHH------hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHH
Confidence 88876 9999999999999999999999999998765 444554443333
No 129
>PRK12382 putative transporter; Provisional
Probab=99.28 E-value=1.2e-10 Score=122.08 Aligned_cols=163 Identities=15% Similarity=0.181 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHH
Q 041588 50 VAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFS 129 (540)
Q Consensus 50 ~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~ 129 (540)
++....+..+..+++.|+.+ .|++. .+.....+..+..++.++.|++.||+ | |||.+.++.
T Consensus 226 ~l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g---------------~~~~~~~~~ 286 (392)
T PRK12382 226 ALQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-G---------------GVKVAIVSL 286 (392)
T ss_pred HHHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-C---------------CCeehHHHH
Confidence 33445666677788888865 56543 45556666677788899999999998 9 999999988
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhh
Q 041588 130 CIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVF 209 (540)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~ 209 (540)
.+..++.+++... .+....++..++.+++.+...+...+...|.+|+++ |++.
T Consensus 287 ~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~ 339 (392)
T PRK12382 287 LVETVGLLLLWLA---------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTA 339 (392)
T ss_pred HHHHHHHHHHHHc---------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHH
Confidence 8888887766554 124455667778888888777877788888888766 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588 210 FNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG 258 (540)
Q Consensus 210 ~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~ 258 (540)
+++++...++|..++|.+.|++.++.||+..|.+.+++.++++++.+..
T Consensus 340 ~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 340 LGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999888877777766544
No 130
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.27 E-value=2.5e-10 Score=120.40 Aligned_cols=178 Identities=12% Similarity=0.013 Sum_probs=130.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
|.++...+..++....++++..++|.|++ ++|++..+++.+......+..++.++.|+++||+ |
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~-------------- 285 (402)
T TIGR00897 222 PNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-G-------------- 285 (402)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-c--------------
Confidence 45677777778888889999999999985 5899999999988888899999999999999998 9
Q ss_pred cchHHHHH-HHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588 120 GRFRTLVV-FSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA 198 (540)
Q Consensus 120 ~r~~~i~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~ 198 (540)
||+.+.. +.+...++.+.+...... ...+....++..++.|++.+...+ ..+...|..| +
T Consensus 286 -~~~~~~~~~~l~~~~~~~~l~~~~~~----------------~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~ 346 (402)
T TIGR00897 286 -WMNTVRWFGGVGCGIFTLALYYIPQH----------------FGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-K 346 (402)
T ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHc----------------cCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-c
Confidence 8887643 333333333333222100 012344455566667776665544 3445556544 3
Q ss_pred ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588 199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG 258 (540)
Q Consensus 199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~ 258 (540)
+ |++++++++.+.++|+.++|.+.+++.+..||...|++.+++.+++.++.++.
T Consensus 347 ~------~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 347 H------KGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred h------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 4 89999999999999999999999999999999999998888777776665543
No 131
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.27 E-value=4.3e-09 Score=112.89 Aligned_cols=149 Identities=17% Similarity=0.145 Sum_probs=123.3
Q ss_pred HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCC
Q 041588 69 REMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSL 148 (540)
Q Consensus 69 ~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~ 148 (540)
+++|+...+-+.+.++|.+++.++.+++|+|.||+ . -.+.+....+.+.+..++....
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~---------------ls~~l~~~~~~w~~~~~~~~~~------ 131 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-P---------------LSKGLSVSGILWGLFGFLTAAV------ 131 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-C---------------hHHHHHHHHHHHHHHHHHHHHH------
Confidence 57788888999999999999999999999999998 7 6666666666555544333333
Q ss_pred CCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 041588 149 RPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVL 228 (540)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~ 228 (540)
++.+.+++.++++|+.+++..|+...+++.+|.+++ |+.-+++++.+.++|.++|.+++
T Consensus 132 ---------------~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA 190 (495)
T KOG2533|consen 132 ---------------HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIA 190 (495)
T ss_pred ---------------hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHH
Confidence 357889999999999999999999999999999887 99999999999999999999998
Q ss_pred Hhhh------hccCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588 229 VYIQ------EQKGWSVGFGIPTAFTICSIIIVAAGFP 260 (540)
Q Consensus 229 ~~l~------~~~g~~~~f~i~~~~~~~~~i~~~~~~~ 260 (540)
..+. ...||++.|++.++++++..++.++..|
T Consensus 191 ~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp 228 (495)
T KOG2533|consen 191 YGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLP 228 (495)
T ss_pred HHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEec
Confidence 7753 3468999999988887766666555544
No 132
>PRK03545 putative arabinose transporter; Provisional
Probab=99.27 E-value=4.2e-10 Score=118.09 Aligned_cols=175 Identities=14% Similarity=0.005 Sum_probs=131.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccc
Q 041588 41 ASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQG 120 (540)
Q Consensus 41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~ 120 (540)
.++...+..++....+++...+++.|+.+..|++..+++.+.....+...++.+++|+++||+ |
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~--------------- 269 (390)
T PRK03545 206 ALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-P--------------- 269 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-c---------------
Confidence 344445555556666777778888999888999999999999999999999999999999997 8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCCh
Q 041588 121 RFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADE 200 (540)
Q Consensus 121 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~ 200 (540)
||+. ..+..+..++..++.... .+...+++..++.|++.+...+...+.+.+..|+ .
T Consensus 270 ~~~~-~~~~~~~~~~~~~l~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~- 326 (390)
T PRK03545 270 SGFL-LIAIALLLVCLLLLLPAA--------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-A- 326 (390)
T ss_pred hhHH-HHHHHHHHHHHHHHHHHh--------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-c-
Confidence 8765 444444444443332221 2345556666777888777667777777777653 3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcC
Q 041588 201 KEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGF 259 (540)
Q Consensus 201 ~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~ 259 (540)
|++++++++...++|..+||.++|++.|+.|++..|++.+++.+++++......
T Consensus 327 -----~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 327 -----TDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 788899998889999999999999999999999999988888777777765443
No 133
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.27 E-value=1.5e-10 Score=122.72 Aligned_cols=163 Identities=9% Similarity=-0.117 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHH
Q 041588 56 FFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVG 135 (540)
Q Consensus 56 ~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~ 135 (540)
.+++..++|.|+.+.+|.+..+.+.+.+...++..++.+++|+++||. + +++.+..+.++..++
T Consensus 239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~---------------~~~~l~~~~~~~~~~ 302 (417)
T PRK10489 239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-R---------------PGLLMLLSTLGSFLA 302 (417)
T ss_pred HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-C---------------cchHHHHHHHHHHHH
Confidence 456677889999888999999999999999999999999999999986 7 788888887777777
Q ss_pred HHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHH
Q 041588 136 MVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFF 215 (540)
Q Consensus 136 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~ 215 (540)
.+++... .+....++..++.|++.+...+...++..|.+|++. |++.+++++.
T Consensus 303 ~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~ 355 (417)
T PRK10489 303 VGLFGLM---------------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTA 355 (417)
T ss_pred HHHHHcc---------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHH
Confidence 6665543 234455566677777777666777788889998776 8999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCcc
Q 041588 216 AINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPY 261 (540)
Q Consensus 216 ~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~ 261 (540)
..++|..++|.+.|++.+..|+...+.+.+++.++..++.....++
T Consensus 356 ~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (417)
T PRK10489 356 QNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGE 401 (417)
T ss_pred HHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999998888877666555544444444343
No 134
>PRK15075 citrate-proton symporter; Provisional
Probab=99.26 E-value=1.3e-10 Score=123.88 Aligned_cols=153 Identities=12% Similarity=0.071 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHH
Q 041588 46 IVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTL 125 (540)
Q Consensus 46 ~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i 125 (540)
+...++....++.+..++|.|+++.+|++..+++.....+.++..++.+++|+++||+ | ||+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g---------------~r~~~ 307 (434)
T PRK15075 244 MLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-G---------------RRPVL 307 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---------------chHHH
Confidence 3444556677888899999999988999999988888888888889999999999998 9 99998
Q ss_pred HHHHHHHHHHH-HHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHH
Q 041588 126 VVFSCIYSVGM-VLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAI 204 (540)
Q Consensus 126 ~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~ 204 (540)
+++.++..+.. +.+..... ............+.+++.+...+...++..|.+|++.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~----- 364 (434)
T PRK15075 308 IAFTVLAILTAYPALSWLVA------------------APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV----- 364 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHc------------------CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc-----
Confidence 87765443322 11111110 0112223333444555666666666778899999887
Q ss_pred hhhhhHHHHHH-HHHHHHHHHHHHHHhhhhccCcc
Q 041588 205 QKYVFFNWFFF-AINMGAIFGITVLVYIQEQKGWS 238 (540)
Q Consensus 205 ~r~~~~~~~~~-~~~iG~~i~p~v~~~l~~~~g~~ 238 (540)
|++++++.+. +..+++.++|.+.+++.|+.|+.
T Consensus 365 -rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 365 -RTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred -cchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 8999998544 44456888999999999988854
No 135
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.26 E-value=3.2e-10 Score=118.68 Aligned_cols=160 Identities=13% Similarity=0.176 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHH
Q 041588 49 EVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVF 128 (540)
Q Consensus 49 ~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~ 128 (540)
.+.....+....+++|.|+++ .|.+..+++...+.......++.++.|+++||+ | ||+.+..+
T Consensus 209 ~~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~---------------~~~~l~~~ 271 (381)
T PRK03633 209 CIISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-G---------------RLLVLRVQ 271 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-C---------------cHHHHHHH
Confidence 344444555566788999875 699999999989888889999999999999998 9 99999888
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhh
Q 041588 129 SCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYV 208 (540)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~ 208 (540)
..+..++.+.+. . ....+.+..+.+++.+...|...+...|..|+++ ++.
T Consensus 272 ~~~~~~~~~~~~-~-----------------------~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~ 321 (381)
T PRK03633 272 VFVVILGSIAML-S-----------------------QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVA 321 (381)
T ss_pred HHHHHHHHHHHh-h-----------------------hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHH
Confidence 777776655432 1 0122334556666666667888888888887754 566
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHH
Q 041588 209 FFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIV 255 (540)
Q Consensus 209 ~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~ 255 (540)
..+.++.+.++|+.++|.++|++.|++||++.|.+.+.+.+++.+..
T Consensus 322 ~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 322 MNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLML 368 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 77777888899999999999999999999999988766665554443
No 136
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.26 E-value=9.5e-11 Score=119.82 Aligned_cols=183 Identities=15% Similarity=0.103 Sum_probs=149.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+..|.+.+..+...-+|-++..++|.|+++++|.+..+++.....+.....+..++||+||||+ |
T Consensus 218 ~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-G-------------- 282 (417)
T COG2223 218 KDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-G-------------- 282 (417)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-c--------------
Confidence 5679999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
.+|++++....++++...+.+... .. ....+...++...+.+.+..|.-+..+..++...|+++
T Consensus 283 -g~rv~~~~f~~~~~~~~~l~~~~~--~~------------~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~- 346 (417)
T COG2223 283 -GRRVTLAVFVGMALAAALLSLFLT--GF------------GHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE- 346 (417)
T ss_pred -chhHHHHHHHHHHHHHHHHHcccc--cc------------ccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-
Confidence 999999888888888877776521 10 01133445555555666777777777788888888764
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC-cchhhhHhHHHHHHHHHHHHhcC
Q 041588 200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG-WSVGFGIPTAFTICSIIIVAAGF 259 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g-~~~~f~i~~~~~~~~~i~~~~~~ 259 (540)
-+...++-....++|+..-|...+...+.+| +...|++...+.+++.++.+...
T Consensus 347 ------~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y 401 (417)
T COG2223 347 ------TGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALY 401 (417)
T ss_pred ------hhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788889999999999999999999999888 99999988888777777655543
No 137
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.25 E-value=8.6e-11 Score=125.45 Aligned_cols=183 Identities=14% Similarity=0.098 Sum_probs=129.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+.+|.+.+..++++.+++.+..++|.|+.+.+|++..+.|.+.+++.+...+..+++|++||+...+ .++.+..
T Consensus 258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~-~ls~t~~----- 331 (466)
T KOG2532|consen 258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFR-ILSETTV----- 331 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCchHhH-----
Confidence 6789999999999999999999999999999999999999999999999999999999999998432 3333322
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhh---ccCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGA---DQYD 196 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~---d~~~ 196 (540)
||-.=.++....+++++.+++.. . .+. ..+++++.++.+....+...+.. |.-|
T Consensus 332 -rkifn~i~~~~~ai~l~~l~~~~---~----------------~~~---~~a~~~l~~~~~~~g~~~~Gf~~~~~~~ap 388 (466)
T KOG2532|consen 332 -RKIFNTIAFGGPAVFLLVLAFTS---D----------------EHR---LLAVILLTIAIGLSGFNISGFYKNHQDIAP 388 (466)
T ss_pred -HHHHHhHHHHHHHHHHHeeeecC---C----------------Ccc---hHHHHHHHHHHHHcccchhhhHhhhhhccc
Confidence 33333445555555665555542 1 111 11122222222222222223222 2222
Q ss_pred CCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhc---cCcchhhhHhHHHHHHHHHHHHhc
Q 041588 197 EADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQ---KGWSVGFGIPTAFTICSIIIVAAG 258 (540)
Q Consensus 197 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~---~g~~~~f~i~~~~~~~~~i~~~~~ 258 (540)
.. -+..+++.++..++.++++|.+.+.+..+ ..|+..|.+.+++.+++.+++.+.
T Consensus 389 q~-------a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 389 QH-------AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred hH-------HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 22 57889999999999999999999999842 369999999999888888776554
No 138
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.24 E-value=2.5e-10 Score=123.61 Aligned_cols=149 Identities=14% Similarity=0.086 Sum_probs=113.2
Q ss_pred HHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHH
Q 041588 58 AIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMV 137 (540)
Q Consensus 58 ~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~ 137 (540)
.+..++|.|+++++|++..+++.+.+...++..++.+++|+++||+ | ||+++.++..+..++.+
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g---------------~~~~~~~~~~~~~~~~~ 356 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-G---------------TRKAYVCSLLISQLLII 356 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---------------chHHHHHHHHHHHHHHH
Confidence 4567899999889999999999999999999999999999999998 9 99998887766555544
Q ss_pred HHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHH
Q 041588 138 LLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAI 217 (540)
Q Consensus 138 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~ 217 (540)
++.... ..+.....+..++.+....+..+..+++..|.+|++. |++.+++++...
T Consensus 357 ~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~ 411 (496)
T PRK03893 357 PVFAIG-------------------GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVG 411 (496)
T ss_pred HHhhcc-------------------ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhh
Confidence 333221 0122233333333333233345667778889998776 999999999999
Q ss_pred HHHHHHHHHHHHhhhhccCcchhhhHhHHH
Q 041588 218 NMGAIFGITVLVYIQEQKGWSVGFGIPTAF 247 (540)
Q Consensus 218 ~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~ 247 (540)
++|+.++|.+.|++.+..||+..+....+.
T Consensus 412 ~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~ 441 (496)
T PRK03893 412 ALGGALAPILGALIAQRLDLGTALASLSFS 441 (496)
T ss_pred hHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 999999999999999999998877654443
No 139
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.24 E-value=6.6e-09 Score=113.54 Aligned_cols=141 Identities=13% Similarity=0.023 Sum_probs=124.7
Q ss_pred HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCC
Q 041588 69 REMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSL 148 (540)
Q Consensus 69 ~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~ 148 (540)
+..+.+.....+..+++.++..+++++.|++|||+ | ||++++++.++.+++.++.+++
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-G---------------Rk~~~~~~~~~~~i~~~~~a~a------ 168 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-G---------------RKPVLLVSLLLFIIFGILTAFA------ 168 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-c---------------cHHHHHHHHHHHHHHHHHHHHh------
Confidence 45667888889999999999999999999999995 9 9999999999999998888877
Q ss_pred CCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 041588 149 RPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVL 228 (540)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~ 228 (540)
.+...+++.|++.|++.++...+...+++|.++++. |+.+.++ ......++.++|.++
T Consensus 169 ---------------~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~ 226 (521)
T KOG0255|consen 169 ---------------PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGA 226 (521)
T ss_pred ---------------CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999987 8888888 777778888889999
Q ss_pred HhhhhccCcchhhhHhHHHHHHHHHHH
Q 041588 229 VYIQEQKGWSVGFGIPTAFTICSIIIV 255 (540)
Q Consensus 229 ~~l~~~~g~~~~f~i~~~~~~~~~i~~ 255 (540)
+++.. +||+.+++..+..++.++..
T Consensus 227 a~~~~--~Wr~~~~~~~~~~~~~~~~~ 251 (521)
T KOG0255|consen 227 AYITR--DWRWLFWIISIPSGLFLLLW 251 (521)
T ss_pred HHHHh--hHHHHHHHHHHHHHHHHHHH
Confidence 99877 89999998877776665553
No 140
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.24 E-value=4.4e-10 Score=121.89 Aligned_cols=180 Identities=14% Similarity=0.085 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHH-HHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccc
Q 041588 42 SPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVT-DWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQG 120 (540)
Q Consensus 42 ~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~-~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~ 120 (540)
.|.+.+..++.....+....+.+.|+.+++|++..+.+.... ...++..++.+++|+++||+ |
T Consensus 224 ~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g--------------- 287 (491)
T PRK11010 224 AWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-S--------------- 287 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h---------------
Confidence 454554456666677777788889988889999999999874 55678889999999999998 9
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCCh
Q 041588 121 RFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADE 200 (540)
Q Consensus 121 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~ 200 (540)
|||.+.++.++..++.+.+....... .+...+.+...+..++.|...+...++..+..+++.
T Consensus 288 ~~~~l~i~~~l~~l~~l~~~~l~~~~-----------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~- 349 (491)
T PRK11010 288 LFRALMIFGILQGVSNAGYWLLSITD-----------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF- 349 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-
Confidence 99988877765555443332211100 122333344445444444444566777778888776
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588 201 KEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFP 260 (540)
Q Consensus 201 ~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~ 260 (540)
+++.+++.+...++|+.+++.++|++.|..||+..|.+.+++.+++++.....++
T Consensus 350 -----~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 350 -----SATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6778899999999999999899999999999999999888888877777665543
No 141
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.24 E-value=4.3e-10 Score=117.84 Aligned_cols=170 Identities=9% Similarity=-0.070 Sum_probs=141.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
|.++..++..++...+++...++.+.|+++ +|.+..+.+.+.+.......+..++.|++.||+ |
T Consensus 205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g-------------- 268 (382)
T TIGR00902 205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-S-------------- 268 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-C--------------
Confidence 566777777788888888888999999965 999999999998888888888899999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
+|+++.++.+...+...+++.. .+.+.+++...+.++..|...++...++.+. |+++
T Consensus 269 -~~~~l~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~ 325 (382)
T TIGR00902 269 -ARDLLLISAIACVGRWAIIGAI---------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE 325 (382)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhH---------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh
Confidence 9999999999999998887765 3466777788999999999999988888887 7655
Q ss_pred hHHHHhhhhhHHHHH-HHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHH
Q 041588 200 EKEAIQKYVFFNWFF-FAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIV 255 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~-~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~ 255 (540)
++++.++++ .+..+|..++|.++|++.|+.|+ ..|.+.++..++++++.
T Consensus 326 ------~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 326 ------IAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence 778888876 46689999999999999999986 56666666666555443
No 142
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.23 E-value=2.3e-10 Score=118.18 Aligned_cols=162 Identities=17% Similarity=0.118 Sum_probs=118.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+.++.+.+..++.....+++..+++.|+.+.+|++..+++.......++..++.+++|+++||..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~-------------- 281 (379)
T TIGR00881 216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFN-------------- 281 (379)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcC--------------
Confidence 556777777788888888888999999999999999999999999999999999999999998634
Q ss_pred cchHHHHHHHH--HHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588 120 GRFRTLVVFSC--IYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE 197 (540)
Q Consensus 120 ~r~~~i~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~ 197 (540)
||+....... ...++...+... + ..+.....+...+.+....+..+....+..|.+|+
T Consensus 282 -~~~~~~~~~~~~~~~~~~~~~~~~---~----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 341 (379)
T TIGR00881 282 -GRRGPLAVFFMALIIVSLLVYWLN---P----------------AANPLMDLICLFALGFLVYGPQMLIGVIASELAPK 341 (379)
T ss_pred -CcchHHHHHHHHHHHHHHHHHhcC---c----------------chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCc
Confidence 4443332221 112222221111 0 01233344444555555545555566778899988
Q ss_pred CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhh
Q 041588 198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGF 241 (540)
Q Consensus 198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f 241 (540)
+. |+++.++++...++|+.++|.+.|++.|+.||+..|
T Consensus 342 ~~------~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 342 KA------AGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred ch------hHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 77 999999999999999999999999999999998765
No 143
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.23 E-value=4.8e-10 Score=119.50 Aligned_cols=177 Identities=13% Similarity=0.073 Sum_probs=114.7
Q ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 41 ASPFIIVN-EVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 41 ~~~~i~~~-~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
..+.+... .++....+|++..|+|.|+.+++|++..+++...++......++.+++|+++||+ |
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-g-------------- 307 (432)
T PRK10406 243 RAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-G-------------- 307 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C--------------
Confidence 33444333 3344778899999999999999999999988888887778888888999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHH-hcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTV-SGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA 198 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~ 198 (540)
||+++.++.++..+..+.+.. ... ..+....+....+..++.+...+...++.+|.||++
T Consensus 308 -rr~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~ 368 (432)
T PRK10406 308 -RRTSMLCFGSLAALFTVPILSALQN------------------VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQ 368 (432)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHc------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 999888776654333322211 110 011111111111122222233345667789999998
Q ss_pred ChHHHHhhhhhHHHHHHHHH-HHHHHHHHHHHhhhhccC-cchhhhHhHHHHHHHHHHHHhc
Q 041588 199 DEKEAIQKYVFFNWFFFAIN-MGAIFGITVLVYIQEQKG-WSVGFGIPTAFTICSIIIVAAG 258 (540)
Q Consensus 199 ~~~~~~~r~~~~~~~~~~~~-iG~~i~p~v~~~l~~~~g-~~~~f~i~~~~~~~~~i~~~~~ 258 (540)
. |++++++.|...+ +++..+|.+.+++. .+| |...+++.++..+++.+..++.
T Consensus 369 ~------r~t~~g~~~~~g~~~~g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 369 V------RALGVGLSYAVANALFGGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred c------cchhhhHHHHHHHHHHHhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 8 9999999776555 44556888888664 445 6666665556566665554443
No 144
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.23 E-value=2.9e-10 Score=122.27 Aligned_cols=185 Identities=12% Similarity=-0.008 Sum_probs=123.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcc-hhhhhhhh
Q 041588 39 WKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPAL-KHVHAIFK 117 (540)
Q Consensus 39 ~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~-~~~~~~~~ 117 (540)
++.+|.+.+..++....++.+..++|.|+.+.+|++..+++....++.++..++.+++|+++||+ ++.+. +...
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~---- 334 (465)
T TIGR00894 260 SLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTA---- 334 (465)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHH----
Confidence 46778888999999999999999999999999999999999999999999999999999999997 51110 0000
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588 118 LQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE 197 (540)
Q Consensus 118 ~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~ 197 (540)
+ +.+..+......+..++..... . .+....++.+.+.+.+.++..+.......|..|.
T Consensus 335 ---~-~~~~~~~~~~~~~~~~~~~~~~-~-----------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 392 (465)
T TIGR00894 335 ---A-RKIFNGIGGLGPGIFAYALPYL-S-----------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR 392 (465)
T ss_pred ---H-HHHHHHHHHHHHHHHHHHHHHc-C-----------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh
Confidence 0 1111111111111111111100 0 1122233334444444444444444445555544
Q ss_pred CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhcc---CcchhhhHhHHHHHHHHHHHHh
Q 041588 198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQK---GWSVGFGIPTAFTICSIIIVAA 257 (540)
Q Consensus 198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~---g~~~~f~i~~~~~~~~~i~~~~ 257 (540)
. ++...++.+...++|+.++|.+.|++.+.. +|..+|.+.++..+++.++...
T Consensus 393 -~------~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 393 -F------LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred -H------HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 3 899999999999999999999999987653 3888888887777777666544
No 145
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.21 E-value=6.3e-11 Score=104.07 Aligned_cols=132 Identities=19% Similarity=0.271 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCC
Q 041588 84 DWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNG 163 (540)
Q Consensus 84 ~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 163 (540)
.+..+..++.++.|+++||+ | ||+++..+..+..++.+.+...
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~-g---------------~~~~~~~~~~~~~~~~~~~~~~--------------------- 48 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRF-G---------------RKPVLLVGLFIFVLSTAMFALS--------------------- 48 (141)
T ss_pred eehhHHHHHHhhHHHHHhhc-c---------------hhHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 34556778899999999998 9 9999999988888887777654
Q ss_pred chhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhH
Q 041588 164 GQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGI 243 (540)
Q Consensus 164 ~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i 243 (540)
.+...+++.+.+.+++.+...+...++..|.+|+++ |++..++.+...++|..++|.+.+++.+..||+..|++
T Consensus 49 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 122 (141)
T TIGR00880 49 SNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLF 122 (141)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHH
Confidence 235667777888999988888899999999999876 89999999999999999999999999998899999988
Q ss_pred hHHHHHHHHHHHHhc
Q 041588 244 PTAFTICSIIIVAAG 258 (540)
Q Consensus 244 ~~~~~~~~~i~~~~~ 258 (540)
..+..+++.+.....
T Consensus 123 ~~~~~~~~~~~~~~~ 137 (141)
T TIGR00880 123 LAILALAAFILLAFL 137 (141)
T ss_pred HHHHHHHHHHHHhhc
Confidence 777666665555443
No 146
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.20 E-value=1e-09 Score=117.77 Aligned_cols=187 Identities=14% Similarity=0.056 Sum_probs=150.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhh
Q 041588 38 GWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFK 117 (540)
Q Consensus 38 ~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~ 117 (540)
+.|.....++..++.+-+...+.+....|.++++|++..+...+..+..+.+.++.+++|++.||+ |
T Consensus 279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g------------ 345 (477)
T PF11700_consen 279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-G------------ 345 (477)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C------------
Confidence 346667777888888899999999999999999999999999988899999999999999999998 9
Q ss_pred cccch--HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccC
Q 041588 118 LQGRF--RTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQY 195 (540)
Q Consensus 118 ~~~r~--~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~ 195 (540)
-| ++++++.+++.+..+.-.+ +..+.. ..-.+.+.+++.-++.|+..|..++..-++.+++.
T Consensus 346 ---~k~~~~l~~~l~~~~~i~~~g~~-G~~~~~------------~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~Li 409 (477)
T PF11700_consen 346 ---PKTKRTLLISLILWIIIPLYGLF-GFWPSF------------FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLI 409 (477)
T ss_pred ---CchhHHHHHHHHHHHHHHHHHHH-Hhhhcc------------cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhC
Confidence 77 8888877665332222221 111110 01124556777777899999999999999999999
Q ss_pred CCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC-cchhhhHhHHHHHHHHHHHHhcC
Q 041588 196 DEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG-WSVGFGIPTAFTICSIIIVAAGF 259 (540)
Q Consensus 196 ~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g-~~~~f~i~~~~~~~~~i~~~~~~ 259 (540)
|+++ .+.+|++|.+..-..+.+||.+.|.+.+.+| .|.++....++.+++++++....
T Consensus 410 P~g~------e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~ 468 (477)
T PF11700_consen 410 PPGR------EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVD 468 (477)
T ss_pred CCch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcc
Confidence 9987 7899999999999999999999999999887 88999888888788877775543
No 147
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.20 E-value=4.1e-10 Score=119.32 Aligned_cols=165 Identities=11% Similarity=0.015 Sum_probs=116.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVR-EMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKL 118 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~-~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~ 118 (540)
+.+|...+..++....++++.+++|.|+++ ..|.+..+++...........++.+++|+++||+ |
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~------------- 307 (412)
T TIGR02332 242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-K------------- 307 (412)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-C-------------
Confidence 456777788888888999999999999977 3477888889989999999999999999999998 8
Q ss_pred ccchHHH-HHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588 119 QGRFRTL-VVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE 197 (540)
Q Consensus 119 ~~r~~~i-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~ 197 (540)
||+.. .+..++..++..+. ... .+....+.+..+.++|.....+.......|.+|+
T Consensus 308 --~r~~~~~~~~~~~~~~~~~~-~~~--------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 364 (412)
T TIGR02332 308 --ERKHHTALPYLFAAAGWLLA-SAT--------------------DHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISL 364 (412)
T ss_pred --ccHHHHHHHHHHHHHHHHHH-Hhc--------------------CCHHHHHHHHHHHHHHhhhhhhHHHhhcccccch
Confidence 77753 33333333333222 111 0111222223333333333223333444566776
Q ss_pred CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC-cchhhhHhHHH
Q 041588 198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG-WSVGFGIPTAF 247 (540)
Q Consensus 198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g-~~~~f~i~~~~ 247 (540)
+. |++++++.+...++|+.++|.+.|.+.+..| |+.+|++.++.
T Consensus 365 ~~------~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 365 QA------RAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HH------HHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 65 9999999999999999999999999999875 99998766554
No 148
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.19 E-value=7.5e-10 Score=117.99 Aligned_cols=186 Identities=13% Similarity=0.032 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccch
Q 041588 43 PFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRF 122 (540)
Q Consensus 43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~ 122 (540)
+..++..+......+.+..+++.++ +++|++..+++.......++..++.+++|+++||+ | ||
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~---------------~~ 349 (481)
T TIGR00879 287 LGVVLQWFQQFTGINAIMYYSPTIF-ENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-G---------------RR 349 (481)
T ss_pred HHHHHHHHHHHhCCeehHHHHHHHH-HHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---------------ch
Confidence 3333444444444444445555554 56899998888888888889999999999999998 9 99
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHH
Q 041588 123 RTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKE 202 (540)
Q Consensus 123 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~ 202 (540)
+.+.++.++..++.+++.......... .........+....++.+....+..+....+..|.+|++.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--- 416 (481)
T TIGR00879 350 PLLLIGAAGMAICLFVLGILGASFVTG----------SSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL--- 416 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCC----------cccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH---
Confidence 999999888888777776432111000 0000012222222222222222334666777799999876
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCcc
Q 041588 203 AIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPY 261 (540)
Q Consensus 203 ~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~ 261 (540)
|+++.++.+...++|++++|.+.+++.++.||...|++.+++.+++.++..+..++
T Consensus 417 ---~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~ 472 (481)
T TIGR00879 417 ---RPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPE 472 (481)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheeccc
Confidence 89999999999999999999999999998999999988877777766665554443
No 149
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.19 E-value=7.4e-10 Score=112.83 Aligned_cols=162 Identities=10% Similarity=0.014 Sum_probs=123.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHh--cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhh
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVRE--MHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFK 117 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~--lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~ 117 (540)
+..+...+..++...+--++..|++.|+.+. +|++..+++...+.+.++..++.+++++++||+ |
T Consensus 140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g------------ 206 (310)
T TIGR01272 140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-S------------ 206 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C------------
Confidence 4455555555555556667788999999854 799999999999999999999999999999998 9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588 118 LQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE 197 (540)
Q Consensus 118 ~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~ 197 (540)
++|++.++..+.+++.+++.... +.. ...+..+.+++.+...|...+...+.+|+
T Consensus 207 ---~~~~l~~~~~l~~~~~~l~~~~~---------------------~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~ 261 (310)
T TIGR01272 207 ---QGRYLAFNAFLAVLLSIGAALTH---------------------GYV-AMWFVLALGLFNSIMFPTIFSLALNALGR 261 (310)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHcC---------------------CHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999888877777665444331 111 23456678899999999998888888876
Q ss_pred CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHH
Q 041588 198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAF 247 (540)
Q Consensus 198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~ 247 (540)
+.. +++ ++. ....+|+.+.|.+.|++.|..|.+.+|++..++
T Consensus 262 ~~~-----~as--ai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 262 HTS-----QGS--GIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred hhh-----hhH--HHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 531 333 343 466799999999999999999988888754444
No 150
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.19 E-value=4e-10 Score=121.00 Aligned_cols=172 Identities=9% Similarity=-0.010 Sum_probs=133.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCCcchhhhhhhhc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAY-LGQPALKHVHAIFKL 118 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~-~G~~~~~~~~~~~~~ 118 (540)
+.++..+...++..++++....+++.|+.+ +|++..+++.+.++..++..++.+++|+++||. .+
T Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~------------- 306 (455)
T TIGR00892 241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIR------------- 306 (455)
T ss_pred chHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-------------
Confidence 556777777778888888888999999864 799999999999999999999999999999984 13
Q ss_pred ccchHHHHHHH--HHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588 119 QGRFRTLVVFS--CIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD 196 (540)
Q Consensus 119 ~~r~~~i~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~ 196 (540)
+++...++. ++..++.+++... .+.+.+++..++.|++.+...++..++..|.+|
T Consensus 307 --~~~~~~~~~~~~~~~l~~ll~~~~---------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~ 363 (455)
T TIGR00892 307 --PHVQYLFSFALLFNGLTHLLCALA---------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVG 363 (455)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHh---------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhh
Confidence 343333332 2233333333332 235566777888999999888999999999998
Q ss_pred CCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhcc-CcchhhhHhHHHHHHHHHH
Q 041588 197 EADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQK-GWSVGFGIPTAFTICSIII 254 (540)
Q Consensus 197 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~-g~~~~f~i~~~~~~~~~i~ 254 (540)
+++ +++.+++++...++|..++|.++|++.+.. +|+..|++.+++.+++.+.
T Consensus 364 ~~~------~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 364 AQR------FSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred HHH------HhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 766 899999999999999999999999999887 4999999887776655543
No 151
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.16 E-value=6.2e-11 Score=114.37 Aligned_cols=155 Identities=10% Similarity=0.165 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccc
Q 041588 43 PFIIVNEVAERLAFFAI--AVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQG 120 (540)
Q Consensus 43 ~~i~~~~~~~~~~~y~~--~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~ 120 (540)
..+.+.++...-+|+.. -.-+..++..+.+...++..++.+++..-..+.+.+|||+-||.+|
T Consensus 44 m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fg--------------- 108 (459)
T KOG4686|consen 44 MALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFG--------------- 108 (459)
T ss_pred HHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhh---------------
Confidence 33444444443333322 2345677777888888888899999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCCh
Q 041588 121 RFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADE 200 (540)
Q Consensus 121 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~ 200 (540)
-|...++-++...+|.+.++.-.. .+..+.+..+|++.|+|.-....+...+..-+|..++
T Consensus 109 ir~gtii~~~fv~~GqliFa~Ggi------------------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE- 169 (459)
T KOG4686|consen 109 IRLGTIILCIFVFLGQLIFAAGGI------------------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE- 169 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHhchH------------------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc-
Confidence 777777777777788887765421 1357889999999999988777788888899998887
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 041588 201 KEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG 236 (540)
Q Consensus 201 ~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g 236 (540)
....|+++-...-+|...-..+.+++.++.|
T Consensus 170 -----Ln~vfGlqlSvAR~GstvNf~lm~~ly~~~~ 200 (459)
T KOG4686|consen 170 -----LNFVFGLQLSVARLGSTVNFLLMPFLYDTMG 200 (459)
T ss_pred -----ccchhhHHHHHHHhhceeeeeecHHHHHHHH
Confidence 8889999888888888877777888877654
No 152
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.14 E-value=3.2e-09 Score=109.61 Aligned_cols=181 Identities=14% Similarity=0.121 Sum_probs=143.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhh
Q 041588 38 GWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFK 117 (540)
Q Consensus 38 ~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~ 117 (540)
+++.++......++...+.|...+|+..|+++..|++.+..+++...+.++..++.+++|+++|| +
T Consensus 209 ~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~------------ 274 (394)
T COG2814 209 RRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--G------------ 274 (394)
T ss_pred cCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--c------------
Confidence 34677888999999999999999999999999999999999999999999999999999999999 7
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588 118 LQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE 197 (540)
Q Consensus 118 ~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~ 197 (540)
.|+++.....+..+.++.+.+.. .+.....+..++.++..+........-.++.. +
T Consensus 275 ---~~~~l~~~~~l~a~~~l~l~~~~--------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p 330 (394)
T COG2814 275 ---PRRALIAALLLLALALLALTFTG--------------------ASPALALALLFLWGFAFSPALQGLQTRLARLA-P 330 (394)
T ss_pred ---chhHHHHHHHHHHHHHHHHHHhc--------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-C
Confidence 89999888888888777777663 23344455555555555443333333334422 2
Q ss_pred CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCccc
Q 041588 198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYY 262 (540)
Q Consensus 198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~ 262 (540)
++ ++.+.+++..+.|+|..+|..++|.+.|+.|+....+++++..++++++.+...++.
T Consensus 331 ~~------~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~~ 389 (394)
T COG2814 331 DA------ADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARKD 389 (394)
T ss_pred Cc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33 678888888899999999999999999999999999999999888888776655443
No 153
>PTZ00207 hypothetical protein; Provisional
Probab=99.14 E-value=2.5e-09 Score=116.86 Aligned_cols=156 Identities=15% Similarity=0.143 Sum_probs=117.2
Q ss_pred HHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHH
Q 041588 57 FAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGM 136 (540)
Q Consensus 57 y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~ 136 (540)
|++..+ ...+.+++|++..+.+.+.++... ..++.+++|+++||+ | +|++++++.+++.+|+
T Consensus 44 y~fsv~-s~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~-G---------------~R~vllig~ll~~iG~ 105 (591)
T PTZ00207 44 YAFNLI-SGAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYL-G---------------PRPIFVLSMTVFCLGT 105 (591)
T ss_pred HHHHHH-HHHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHh-C---------------cHHHHHHHHHHHHHHH
Confidence 444433 446788999999999988877443 345677789999998 9 9999999999999999
Q ss_pred HHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHH
Q 041588 137 VLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFA 216 (540)
Q Consensus 137 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~ 216 (540)
++++++... .. ..+.+.+++.+++.|+|.+...+.......++||+ + |+.+.++...+
T Consensus 106 ll~ala~~~-~i--------------~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~-~------RG~a~Gi~~~~ 163 (591)
T PTZ00207 106 LLFALTFQE-VI--------------EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS-N------RGAVVAIMKTF 163 (591)
T ss_pred HHHHHHhcc-cc--------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-h------hHHHHHHHHHH
Confidence 999886210 00 13577888899999999988888888888999974 3 89999999999
Q ss_pred HHHHHHH-HHHHHHhhhhccCcchhhhHhHHHHHHHHHH
Q 041588 217 INMGAIF-GITVLVYIQEQKGWSVGFGIPTAFTICSIII 254 (540)
Q Consensus 217 ~~iG~~i-~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~ 254 (540)
.++|+.+ +++..+++.+ +|+..|++.++..++..++
T Consensus 164 ~gLGsaI~~~l~~~l~~~--~~~~~fl~l~vl~~vv~ll 200 (591)
T PTZ00207 164 TGLGSAILGSIQLAFFSD--NTSAYFFFLMSFALVVGIL 200 (591)
T ss_pred HHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHH
Confidence 9999975 5655666553 5777776655554443333
No 154
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.13 E-value=3.7e-07 Score=98.19 Aligned_cols=76 Identities=17% Similarity=0.134 Sum_probs=58.7
Q ss_pred HHHHHHhhhhHHHHHhhhccccchhhHhHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccCcCCCCchhHHHHHHHHHHH
Q 041588 444 SAEVFTYVGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDLNMSKLDYFYWILAGIN 523 (540)
Q Consensus 444 ~~e~~~~~~~~~~~~~~aP~~~r~~~~~~~~~~~~ig~~l~~~l~~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~la~l~ 523 (540)
+.-.-..+..-++..+.+|++..+...|++.++.-..+++||.+.+++...|+ ...+-++.+.++.
T Consensus 392 ~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg--------------~~r~g~~~l~~lf 457 (477)
T PF11700_consen 392 LFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG--------------SQRYGFLFLLVLF 457 (477)
T ss_pred HHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CchhHHHHHHHHH
Confidence 33334455567799999999999999999999999999999999999987763 1224567777777
Q ss_pred HHHHHHHHHH
Q 041588 524 GLNFFVYFWV 533 (540)
Q Consensus 524 ~~~~~~y~~~ 533 (540)
+++++++..+
T Consensus 458 ~~gl~ll~~v 467 (477)
T PF11700_consen 458 LIGLILLFFV 467 (477)
T ss_pred HHHHHHHhhc
Confidence 7777665443
No 155
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.10 E-value=3.7e-09 Score=112.08 Aligned_cols=145 Identities=14% Similarity=0.036 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHH
Q 041588 54 LAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYS 133 (540)
Q Consensus 54 ~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~ 133 (540)
...+.+..++|.|+.+ .|++..+.+.......++..++.+++|+++||+ | ||+++..+.++..
T Consensus 245 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~---------------~~~~~~~~~~~~~ 307 (426)
T PRK12307 245 GANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-G---------------LKKTFSIGLLMSF 307 (426)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---------------cHHHHHHHHHHHH
Confidence 3444567788999876 699999899888888889999999999999998 9 9999988887766
Q ss_pred HHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHH--hcCCCccchhhhhhccCCCCChHHHHhhhhhHH
Q 041588 134 VGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIAL--GTRDIKPCVSSFGADQYDEADEKEAIQKYVFFN 211 (540)
Q Consensus 134 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~ 211 (540)
++.+++.... . ... ..+...+.++ +..+..+..+.+..|.+|++. |+++++
T Consensus 308 ~~~~~~~~~~---~----------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g 360 (426)
T PRK12307 308 LFIFPLFRIP---Q----------------DNY--LLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTG 360 (426)
T ss_pred HHHHHHHHHc---c----------------ccH--HHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------Hhhhhh
Confidence 6555444321 0 111 1222223332 223334556677889999876 899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccCcchhhh
Q 041588 212 WFFFAINMGAIFGITVLVYIQEQKGWSVGFG 242 (540)
Q Consensus 212 ~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~ 242 (540)
+.+...++|+.++|.+.|++.+..|+....+
T Consensus 361 ~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~ 391 (426)
T PRK12307 361 LIYNLAATSGTFNSMAATWLGITMGLGAALT 391 (426)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHcccHHHHHH
Confidence 9999999999999999999999888665433
No 156
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.10 E-value=4.7e-09 Score=109.95 Aligned_cols=174 Identities=12% Similarity=0.002 Sum_probs=118.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccc
Q 041588 41 ASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQG 120 (540)
Q Consensus 41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~ 120 (540)
..|......++.....+....+++.|+.+.+|++..+++.+.....++..++.++.|+++||+ |
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~--------------- 263 (382)
T PRK10091 200 APWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-S--------------- 263 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-C---------------
Confidence 345554444555555555567778888888999999999999999999999999999999998 9
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhh-ccCCCCC
Q 041588 121 RFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGA-DQYDEAD 199 (540)
Q Consensus 121 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~-d~~~~~~ 199 (540)
+++.+.++..+..++.+++.... .+....++...+.++|.++..+....... +..+++.
T Consensus 264 ~~~~~~~~~~~~~i~~~~~~~~~--------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (382)
T PRK10091 264 PLRIAAVTDFIIVLALLMLFFFG--------------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL 323 (382)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH--------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH
Confidence 99999988887777776554321 11233334444455554444443333333 3333222
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhc-cCcchhhhHhHHHHHHHHHHHHhc
Q 041588 200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQ-KGWSVGFGIPTAFTICSIIIVAAG 258 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~-~g~~~~f~i~~~~~~~~~i~~~~~ 258 (540)
++.. ..+...++|..+||.++|++.|. .||+..+.+.++..++++......
T Consensus 324 ------~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (382)
T PRK10091 324 ------LGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLY 375 (382)
T ss_pred ------HHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHH
Confidence 3333 33566789999999999999885 679999988877766655554443
No 157
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.10 E-value=1.8e-09 Score=116.65 Aligned_cols=174 Identities=14% Similarity=0.051 Sum_probs=113.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccc
Q 041588 41 ASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQG 120 (540)
Q Consensus 41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~ 120 (540)
..|.+.+..++.....+.+..++|.|+.+++|++..+++.+.+.+.++..++.+++|+++||+ |
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~--------------- 316 (476)
T PLN00028 253 RTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-A--------------- 316 (476)
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-H---------------
Confidence 346555555555556667778899999989999999999999999999999999999999998 7
Q ss_pred ch-----H--HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhc
Q 041588 121 RF-----R--TLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGAD 193 (540)
Q Consensus 121 r~-----~--~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d 193 (540)
|| + .+.+..++..++.+++... .+.....+..++.+++.+...+...++..+
T Consensus 317 ~r~~~~~r~~~~~~~~~l~~i~~~~~~~~---------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 375 (476)
T PLN00028 317 RRFGMRGRLWALWIVQTLGGVFCIWLGRA---------------------NSLGAAIVVMILFSIFVQAACGATFGIVPF 375 (476)
T ss_pred HhcCcchhHHHHHHHHHHHHHHHHHhccc---------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcc
Confidence 54 2 2222222222222222111 122333334444455444334444455555
Q ss_pred cCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcC
Q 041588 194 QYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGF 259 (540)
Q Consensus 194 ~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~ 259 (540)
..| +. ++...++.+.+.++|+.++|.+.+ ..+..+|+.+|++.+++.+++.++.++.+
T Consensus 376 ~~~-~~------~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 376 VSR-RS------LGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred cCh-hh------chhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 443 23 888888887777888877776644 22344699999988888777777766654
No 158
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.10 E-value=2.1e-09 Score=113.12 Aligned_cols=172 Identities=12% Similarity=0.087 Sum_probs=124.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhc---CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhh
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREM---HQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIF 116 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~l---g~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~ 116 (540)
|.++..++..++....+.....+++.|+.+.+ +.+....+...+...+...++.+..|++.||+ |
T Consensus 215 ~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g----------- 282 (396)
T TIGR00882 215 RKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-G----------- 282 (396)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-----------
Confidence 34455555555555555556667888887765 45556677778877888888889999999998 9
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588 117 KLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD 196 (540)
Q Consensus 117 ~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~ 196 (540)
||+.+.++.++..++..+.... .+...+++...+.+++..........+..+..+
T Consensus 283 ----~~~~l~~~~~l~~l~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 337 (396)
T TIGR00882 283 ----AKNALLIAGTIMSVRIIGSSFA---------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFD 337 (396)
T ss_pred ----cchhHHHHHHHHHHHHHHHHhc---------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999988888877665544 234455666777777765444444445566666
Q ss_pred CCChHHHHhhhhhHHH-HHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHH
Q 041588 197 EADEKEAIQKYVFFNW-FFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIII 254 (540)
Q Consensus 197 ~~~~~~~~~r~~~~~~-~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~ 254 (540)
++. +++..+. ++.+..+|+.++|.++|++.|..||+..|.+.+++.++..+.
T Consensus 338 ~~~------~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 338 VRL------SATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred cce------EEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 554 6666666 677889999999999999999999999998877766555444
No 159
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.08 E-value=3.3e-09 Score=109.11 Aligned_cols=155 Identities=10% Similarity=0.040 Sum_probs=127.6
Q ss_pred chHHHHHHHHHHHHHHHHHHH-HHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhc
Q 041588 40 KASPFIIVNEVAERLAFFAIA-VNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKL 118 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~-~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~ 118 (540)
+.++..+...++....+++.. .+.|.|..+.+|.+..+.+.......++..++.+++|+++||+ |
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~------------- 275 (365)
T TIGR00900 210 PLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-K------------- 275 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-------------
Confidence 455666666677777777666 7788888877999999999999999999999999999999998 9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588 119 QGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA 198 (540)
Q Consensus 119 ~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~ 198 (540)
|++.+..+..+..++...+.... .+...+++..++.+++.+...+...++..|.+|++
T Consensus 276 --~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 333 (365)
T TIGR00900 276 --RMALMTGAIFVIGLAILVVGLTP--------------------PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAE 333 (365)
T ss_pred --hhHHHHHHHHHHHHHHHHHHhhc--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 99998888776666666655541 02455667778889999888888999999999887
Q ss_pred ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 041588 199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG 236 (540)
Q Consensus 199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g 236 (540)
+ |++.+++++...++|+.++|.++|++.|..|
T Consensus 334 ~------~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 334 L------LGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 6 9999999999999999999999999988654
No 160
>PRK10504 putative transporter; Provisional
Probab=99.07 E-value=5.7e-09 Score=112.36 Aligned_cols=158 Identities=11% Similarity=0.050 Sum_probs=122.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
|.+...++..++...++.....+.|.|++..+|.+..+++.......+...++.++.|+++||+ |
T Consensus 261 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g-------------- 325 (471)
T PRK10504 261 RTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-G-------------- 325 (471)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C--------------
Confidence 4556666777777777766667788888888999999999888877777778889999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
||+++.++..+..++..++..... ......+.+..++.|++.+...+....+..+.+|+++
T Consensus 326 -~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 386 (471)
T PRK10504 326 -YRRVLVATTLGLALVSLLFMLVAL------------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL 386 (471)
T ss_pred -chHHHHHHHHHHHHHHHHHHhccc------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh
Confidence 999999888877777666554310 0123333445566777777777778888888888766
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCc
Q 041588 200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGW 237 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~ 237 (540)
++.+++++++...+|..+|+.++|.+.+..|+
T Consensus 387 ------~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 387 ------ASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred ------ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 89999999999999999999999988776665
No 161
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.07 E-value=1.1e-08 Score=107.84 Aligned_cols=173 Identities=13% Similarity=-0.066 Sum_probs=126.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+.++...+..++....++....+.|.|+.+++|++..+.+.......++..++.++.|+++||+ |
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~-------------- 279 (406)
T PRK15402 215 RRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-P-------------- 279 (406)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C--------------
Confidence 4456555555555566666667788999889999999888877777777888999999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
+|+.+.++.++..++..++...... ...+...++++.++.++|.+...+.......+..+ ++
T Consensus 280 -~~~~~~~~~~~~~~g~~~~~~~~~~----------------~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~ 341 (406)
T PRK15402 280 -LRSLIRMGLWPMVAGLLLAALATVI----------------SSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSSD-VS 341 (406)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHc----------------ccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcc-cc
Confidence 9999999888887777777654210 01234556677788888888766665555433322 33
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHH
Q 041588 200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICS 251 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~ 251 (540)
+++..+.+++...+|..+|+.+.+++.+..++....+..++..++.
T Consensus 342 ------~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 342 ------KGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred ------ccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 8999999999999999999999999988877665444444443333
No 162
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.07 E-value=8.1e-09 Score=109.89 Aligned_cols=185 Identities=9% Similarity=-0.014 Sum_probs=131.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+..|.+.+..++..-+|-++..++|.|+++.+ +...+.....+..+...+..++||++|||+ |
T Consensus 252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRi-G-------------- 314 (462)
T PRK15034 252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKF-G-------------- 314 (462)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhc-C--------------
Confidence 45688888888888888888889999998865 333333334455677888999999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC-
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA- 198 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~- 198 (540)
++|++.++.++..++...+.... |. .+..+...+.++.+.+.++.|.-...+..++.+.||++
T Consensus 315 -~~~vl~~~~i~~~i~~~~~~l~l--p~-------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~ 378 (462)
T PRK15034 315 -GVRVTLINFIFMAIFSALLFLTL--PG-------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQIT 378 (462)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHh--cc-------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhh
Confidence 99999999887777654433331 11 01134555666665666777777777777888888741
Q ss_pred ---------C-----hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC-cchhhhHhHHHHHHHHHHHHh
Q 041588 199 ---------D-----EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG-WSVGFGIPTAFTICSIIIVAA 257 (540)
Q Consensus 199 ---------~-----~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g-~~~~f~i~~~~~~~~~i~~~~ 257 (540)
+ ...+++-+...++-.....+|+.+-|.+.|...+.+| +..+|+...+..++++++-+.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~ 452 (462)
T PRK15034 379 IYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL 452 (462)
T ss_pred hhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 0 0111235677888888889999999988888777655 888898888877777666544
No 163
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.07 E-value=7.2e-09 Score=108.75 Aligned_cols=176 Identities=13% Similarity=0.029 Sum_probs=122.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHH-HHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 41 ASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIG-AAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~-~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
..+..+...++...+.....++.+.|+.+ .|++.++.+.+...... ...++.+++|+++||+ |
T Consensus 209 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g-------------- 272 (390)
T TIGR02718 209 LAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-G-------------- 272 (390)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-h--------------
Confidence 45556666677777777777888899875 79999999998887754 5566788999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC-C
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE-A 198 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~-~ 198 (540)
+|+++..+..+..+..+....... ... .......+....+.+++.|...+...+...+..++ +
T Consensus 273 -~~~~l~~~~~~~~~~~~~~~~~~~-~~~--------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 336 (390)
T TIGR02718 273 -LWRTFILGVGLAGSLALLWFAQAA-FWL--------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGD 336 (390)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHH-ccc--------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999998877655333222221110 000 01122333333444555565556666666666655 4
Q ss_pred ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHH
Q 041588 199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIII 254 (540)
Q Consensus 199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~ 254 (540)
. +++.+++++...++|..++|.++|++.|..||+..|.+.+++.+++.+.
T Consensus 337 ~------~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 337 Q------AGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred c------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 3 7899999999999999999999999999999999998776665555443
No 164
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.06 E-value=8.7e-09 Score=106.58 Aligned_cols=156 Identities=16% Similarity=0.085 Sum_probs=118.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+..+.+.+..++....++++..++|.|+++ .|++..+++.+.+...++..++.++.|+++||+-+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~-------------- 261 (355)
T TIGR00896 197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKD-------------- 261 (355)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcc--------------
Confidence 445666666667778888888999999975 79999999999999999999999999999999834
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
||+++.++.++..++.+.+.... +.... ...++.|++.|...+...+...+..++++
T Consensus 262 -~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~ 318 (355)
T TIGR00896 262 -QRGIVAVLAVLQLVGLCGLLFAP---------------------MHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAA 318 (355)
T ss_pred -chHHHHHHHHHHHHHHHHHHHhh---------------------hhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHH
Confidence 56667777777777776665541 11111 23457788888888877777666554432
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC-cc
Q 041588 200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG-WS 238 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g-~~ 238 (540)
+++..+++.+...++|+.++|.+.|++.|++| |.
T Consensus 319 -----~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~ 353 (355)
T TIGR00896 319 -----QAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL 353 (355)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 26778888888889999999999999999876 44
No 165
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.06 E-value=7.7e-09 Score=108.31 Aligned_cols=168 Identities=10% Similarity=-0.042 Sum_probs=126.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
|.++..++..++....+....++++.|+. +.|++..+.+.+.+.......+..++.|++.||+ |
T Consensus 205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~-------------- 268 (382)
T PRK11128 205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-S-------------- 268 (382)
T ss_pred hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-C--------------
Confidence 55666666666666777777788899995 5899999999988888888888889999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
+|+.+..+.+...++.+++... .+.+.+++..++.|++.+...+....+..++ ++++
T Consensus 269 -~~~~l~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~ 325 (382)
T PRK11128 269 -ARDLLLLSAICGVVRWGLMGST---------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE 325 (382)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhh---------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh
Confidence 9999999888888877666544 2456667778888888887777776666664 3332
Q ss_pred hHHHHhhhhhHHHHH-HHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHH
Q 041588 200 EKEAIQKYVFFNWFF-FAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSII 253 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~-~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i 253 (540)
+++..++++ ....+|..++|.++|++.|..|+. .|+..+++.+++++
T Consensus 326 ------~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~~ 373 (382)
T PRK11128 326 ------VIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPALF 373 (382)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHH
Confidence 566777765 456778889999999999998874 55555544444433
No 166
>TIGR00895 2A0115 benzoate transport.
Probab=99.05 E-value=2.7e-09 Score=111.09 Aligned_cols=148 Identities=16% Similarity=0.081 Sum_probs=114.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+..+.+.+..++....++.+..++| |+.+++|.+..+++.......++..++.+++|+++||+ |
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-------------- 313 (398)
T TIGR00895 250 RITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-G-------------- 313 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c--------------
Confidence 3445555566677778888888888 66678999999999999999999999999999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
||+.+....+...++.++.... .+....++..++.+++.++..+...++.+|.+|++.
T Consensus 314 -~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 371 (398)
T TIGR00895 314 -PRVTALLLLLGAVFAVLVGSTL---------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI 371 (398)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHh---------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 8855444433333333322211 124455666778888888888899999999998876
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 041588 200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYI 231 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l 231 (540)
|++++++++...++|+.++|.++|++
T Consensus 372 ------~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 372 ------RATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 99999999999999999999999876
No 167
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.03 E-value=5.2e-07 Score=90.98 Aligned_cols=171 Identities=15% Similarity=0.190 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccc
Q 041588 42 SPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGR 121 (540)
Q Consensus 42 ~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r 121 (540)
+..++++.+=-|...-++-+.+ .-+.+++|+|.+.++++.+++.....++.+++.+++.|+ | -
T Consensus 14 i~gIvlia~NLR~~itsvgPLL-~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g---------------~ 76 (395)
T COG2807 14 LAGIVLIAFNLRPAITSVGPLL-DEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-G---------------E 76 (395)
T ss_pred HHHHHHHHhccchhhhhhhhhH-HHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-h---------------h
Confidence 3344444455566666555544 447789999999999999999999999999999999998 9 9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChH
Q 041588 122 FRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEK 201 (540)
Q Consensus 122 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~ 201 (540)
.+.+..+.++..+|..+=... +...++.+..+.|.|.+......++++-+.||++
T Consensus 77 er~l~~~Llli~~G~~iR~~~----------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~--- 131 (395)
T COG2807 77 ERSLFLALLLIAAGILIRSLG----------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR--- 131 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhcc----------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc---
Confidence 999999999888887775543 3567888899999999999999999999999886
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhcc-CcchhhhHhHHHHHHHHHHHHhc
Q 041588 202 EAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQK-GWSVGFGIPTAFTICSIIIVAAG 258 (540)
Q Consensus 202 ~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~-g~~~~f~i~~~~~~~~~i~~~~~ 258 (540)
.+...+.|..+.++|+.+++.++..+.++. ||+.+..+-+...++++++++.-
T Consensus 132 ----~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq 185 (395)
T COG2807 132 ----VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQ 185 (395)
T ss_pred ----hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhh
Confidence 577889999999999999999999888877 79999988888777777776543
No 168
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.02 E-value=6.9e-09 Score=110.33 Aligned_cols=162 Identities=15% Similarity=0.087 Sum_probs=123.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
|.++.+++..++...+++....+.+.|++..+| +....+.+.....+...++.++.|+++||+ |
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g-------------- 285 (437)
T TIGR00792 222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-G-------------- 285 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------------
Confidence 566667777777778877766666666665566 455666777777888889999999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
||+++.++.++.+++.+.+.+.. .+...+++..++.+++.+...+...++.+|..|.++
T Consensus 286 -~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 344 (437)
T TIGR00792 286 -RKILFAGGILLMVLGYLIFFFAG--------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGE 344 (437)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHcc--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 99999999888888777665531 123455566677888888888888999999876432
Q ss_pred hH-HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcc
Q 041588 200 EK-EAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWS 238 (540)
Q Consensus 200 ~~-~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~ 238 (540)
.+ ..+.++..+++++++..+|..+++.+.|++.+..||.
T Consensus 345 ~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 345 WKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred hhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 11 1123688899999999999999999999998887774
No 169
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.01 E-value=2.7e-09 Score=116.00 Aligned_cols=174 Identities=16% Similarity=0.104 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHH------------HHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhh
Q 041588 47 VNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGT------------HVTDWIGAAYVLTILGAFLADAYLGQPALKHVHA 114 (540)
Q Consensus 47 ~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~------------~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~ 114 (540)
...++..+.+|++..++|.+++ +.|++..+++. ...+..++..++.+++++++||+ |
T Consensus 295 ~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-g--------- 363 (502)
T TIGR00887 295 GSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-G--------- 363 (502)
T ss_pred HHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-c---------
Confidence 3445556788888888888885 67886543211 12223334555778899999998 9
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhcc
Q 041588 115 IFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQ 194 (540)
Q Consensus 115 ~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~ 194 (540)
||++++++.++..++..++....... .....+........++..+..+....+.+|.
T Consensus 364 ------RR~~l~~~~~~~~~~~~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~ 420 (502)
T TIGR00887 364 ------RKPIQLMGFFILTVLFFVLGFAYNHL-----------------STHGFLAIYVLAQFFANFGPNATTFIVPGEV 420 (502)
T ss_pred ------chhHHHHHHHHHHHHHHHHHHHHHhc-----------------chhHHHHHHHHHHHHHhcCCCchhhhhhhcc
Confidence 99999998887777766665432100 0111111111122222223345666778999
Q ss_pred CCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhc----------cCcchhhhHhHHHHHHHHHHHHhcCcc
Q 041588 195 YDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQ----------KGWSVGFGIPTAFTICSIIIVAAGFPY 261 (540)
Q Consensus 195 ~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~----------~g~~~~f~i~~~~~~~~~i~~~~~~~~ 261 (540)
+|.+. |+++.++.+....+|++++|.+.+++.+. .++...|++.+++.+++.+.. +..|+
T Consensus 421 ~p~~~------R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~lpE 490 (502)
T TIGR00887 421 FPTRY------RSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLIPE 490 (502)
T ss_pred CchhH------HHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh-eEecc
Confidence 99988 99999999999999999999999998874 334556666666555554443 33344
No 170
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=99.00 E-value=1.5e-08 Score=104.55 Aligned_cols=139 Identities=15% Similarity=0.097 Sum_probs=106.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 041588 73 QSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPA 152 (540)
Q Consensus 73 ~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~ 152 (540)
++....+.+..+..++..+++++.||++|++ | ||+++...++++++++++.+++.
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-G---------------RK~vYG~~liImIi~t~~~~~s~--------- 135 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-G---------------RKKVYGKELIIMIICSALSGLSV--------- 135 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-c---------------chhhhhHHHHHHHHHHHHhccCC---------
Confidence 5677788889999999999999999999998 9 99999999999999998665542
Q ss_pred CCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhh----hHHHHHHHHHHHHHHHHHHH
Q 041588 153 CKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYV----FFNWFFFAINMGAIFGITVL 228 (540)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~----~~~~~~~~~~iG~~i~p~v~ 228 (540)
|.++...-...+..-|.++|+|.|+=.|...++.+|.-.++. |+. .|+...+++-.|+.++.++.
T Consensus 136 -----~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~ 204 (538)
T KOG0252|consen 136 -----GTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVS 204 (538)
T ss_pred -----CCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHH
Confidence 222333456778888999999999999999999998876655 555 45556777777777777666
Q ss_pred Hhhhhcc-----------CcchhhhHhHHH
Q 041588 229 VYIQEQK-----------GWSVGFGIPTAF 247 (540)
Q Consensus 229 ~~l~~~~-----------g~~~~f~i~~~~ 247 (540)
+-..... =||..|.+.++.
T Consensus 205 ~~fe~~~~~~~~~~~ld~vWRl~~glg~vp 234 (538)
T KOG0252|consen 205 AIFEKIFNGPSTYPHLDGVWRIIFGLGAVP 234 (538)
T ss_pred HHHhccCCCCCCchHHHHHHHHHHHHHHHH
Confidence 5443211 288877655444
No 171
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.99 E-value=1.1e-08 Score=104.84 Aligned_cols=177 Identities=12% Similarity=0.060 Sum_probs=145.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+.+..-+++.++.+=+-.++.+....|...++|++..+..++...-...+.++++++|+|+||+ |
T Consensus 252 ~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g-------------- 316 (438)
T COG2270 252 KNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-G-------------- 316 (438)
T ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------------
Confidence 4556666777777777778888889999999999999999999999999999999999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
-|++++++.+++.+..+...... ....+++.-++.|+..|+.++..-++.++..|+++
T Consensus 317 -~k~vl~~~lvi~~~~~~~~~~~~---------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k 374 (438)
T COG2270 317 -SKPVLMIGLVILSIAALYLIFLE---------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK 374 (438)
T ss_pred -CceeehHHHHHHHHHHHHHHHcc---------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc
Confidence 89999999988777666555442 12334455568899999999999999999999987
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC-cchhhhHhHHHHHHHHHHHHhcC
Q 041588 200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG-WSVGFGIPTAFTICSIIIVAAGF 259 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g-~~~~f~i~~~~~~~~~i~~~~~~ 259 (540)
-+++|++|....-.++.+||.+.+.+.+.+| -|.++....+...+++++++..+
T Consensus 375 ------~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~ 429 (438)
T COG2270 375 ------EGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVK 429 (438)
T ss_pred ------ccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeec
Confidence 6889999999999999999999999988776 67777666666666666655443
No 172
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.99 E-value=1.1e-08 Score=110.98 Aligned_cols=155 Identities=12% Similarity=-0.003 Sum_probs=127.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
|.+....+..++....+++...++|.|+++.+|++..+++.......+...++.+++|++.||+ |
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g-------------- 323 (495)
T PRK14995 259 RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-G-------------- 323 (495)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C--------------
Confidence 4556666777777888888888999999999999999999999999999999999999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
||+.+..+.++..++..++..... ..+....+...++.|+|.|...+.......+..|+++
T Consensus 324 -~~~~~~~g~~~~~~~~~~l~~~~~------------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~ 384 (495)
T PRK14995 324 -LRLVATGGMALSALSFYGLAMTDF------------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK 384 (495)
T ss_pred -chHHHHHHHHHHHHHHHHHHHhcC------------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh
Confidence 999998888888777776654321 0123445567778899999888777777778888776
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 041588 200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQ 234 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~ 234 (540)
++.+.++++...++|+.+|+.+.+.+.++
T Consensus 385 ------~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 385 ------AAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred ------cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999988653
No 173
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.99 E-value=9e-09 Score=110.93 Aligned_cols=156 Identities=11% Similarity=0.035 Sum_probs=127.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+.++...+..++..+.+++...++|.|+++.+|++..+++.......++..++.+++|+++||+ |
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~-------------- 319 (485)
T TIGR00711 255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-D-------------- 319 (485)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C--------------
Confidence 4556667777788888888889999999999999999999999999999999999999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
||+++.++..+..++..++..... + ..+...+....++.|+|.+...+.......+.+|+++
T Consensus 320 -~~~~~~~g~~~~~~~~~~~~~~~~-~----------------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~ 381 (485)
T TIGR00711 320 -PRKLVTIGLILYAVGFYWRAFTFT-P----------------DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK 381 (485)
T ss_pred -cHHHHHHHHHHHHHHHHHHhccCC-C----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 999999998888888777663210 0 1234455566778888888777666676777777765
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 041588 200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQ 234 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~ 234 (540)
++++.++++...++|+.+|+.+.+.+.++
T Consensus 382 ------~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 382 ------IARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred ------HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999988765
No 174
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.97 E-value=4.6e-08 Score=105.35 Aligned_cols=166 Identities=10% Similarity=0.003 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHH
Q 041588 56 FFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVG 135 (540)
Q Consensus 56 ~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~ 135 (540)
++.+..+.|.++ +++|++...+........+...++.+++|+++||+ | ||++++.+.++..++
T Consensus 287 ~~~~~~~~p~i~-~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g---------------~r~~~i~~~~~~~v~ 349 (479)
T PRK10077 287 INVVLYYAPEIF-KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-G---------------RKPLQIIGALGMAIG 349 (479)
T ss_pred hhHHHHHHHHHH-HHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-c---------------ChHHHHHhHHHHHHH
Confidence 344444445544 56888877777766667778889999999999998 9 999999999988888
Q ss_pred HHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCC-CccchhhhhhccCCCCChHHHHhhhhhHHHHH
Q 041588 136 MVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRD-IKPCVSSFGADQYDEADEKEAIQKYVFFNWFF 214 (540)
Q Consensus 136 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~-~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~ 214 (540)
.+++......+ .. ......++.+.+.+.+. ..|...++.+|.+|++. |++++++.+
T Consensus 350 ~~~l~~~~~~~----------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~ 406 (479)
T PRK10077 350 MFSLGTAFYTQ----------------AP-GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAV 406 (479)
T ss_pred HHHHHHHHhcC----------------cc-cHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHH
Confidence 87776542100 01 11233344444444443 34677889999998876 999999988
Q ss_pred HHHHHHHHHHHHHHH------hhhhccCcchhhhHhHHHHHHHHHHHHhcCcc
Q 041588 215 FAINMGAIFGITVLV------YIQEQKGWSVGFGIPTAFTICSIIIVAAGFPY 261 (540)
Q Consensus 215 ~~~~iG~~i~p~v~~------~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~ 261 (540)
...++|..+++.+.+ ++.+..+|+..|++.++..+++.++.+...++
T Consensus 407 ~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 459 (479)
T PRK10077 407 AAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 459 (479)
T ss_pred HHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhcccc
Confidence 888888887755544 44567889888888766666665555444443
No 175
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.96 E-value=3.4e-08 Score=102.73 Aligned_cols=164 Identities=15% Similarity=0.085 Sum_probs=116.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+..+...+...+....++....+.|.|+.+++|.+..+++.+.....+...++.+++|+++||+ |
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~-------------- 270 (385)
T TIGR00710 206 KMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-G-------------- 270 (385)
T ss_pred chhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C--------------
Confidence 3445555555566667777778889999989999999999999989999999999999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
||+.+..+..+..++.+++......+ ......++....+.+++.+...+.......|.+|+ +
T Consensus 271 -~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~ 332 (385)
T TIGR00710 271 -AKSLLRMGLILFAVSAVLLEITAILG----------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPH-V 332 (385)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhc----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-c
Confidence 99999988877777766665542100 01233444556677788887778777777787763 3
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhh
Q 041588 200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFG 242 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~ 242 (540)
+++..++++.....++.+.+.+.+.+.+..+|...+.
T Consensus 333 ------~g~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 369 (385)
T TIGR00710 333 ------AGTASALFGTLRLVLGAIVGYLVSLIHGNTAWPMSLS 369 (385)
T ss_pred ------chHHHHHHHHHHHHHHHHHHHHHHhccccChHHHHHH
Confidence 7888888777665544444444556655555554443
No 176
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.95 E-value=4.7e-08 Score=103.13 Aligned_cols=174 Identities=15% Similarity=0.158 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHH-HHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 41 ASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWI-GAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~-~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
.++.+++..++.....+....+.+.|+.+++|++..+.+.+..... +...++.+++|+++||+ |
T Consensus 210 ~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g-------------- 274 (402)
T PRK11902 210 GAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-G-------------- 274 (402)
T ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-h--------------
Confidence 3444444444444433333344556777889999999988876554 45788899999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHH----HHHHhcCCCccchhhhhhccC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALG----LIALGTRDIKPCVSSFGADQY 195 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~g~g~~~~~~~~~~~d~~ 195 (540)
||+.+.++..+..+..+.+......+ .+.+.++++.. ..+++.+...+....+..+.+
T Consensus 275 -~~~~l~~~~~~~~l~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 336 (402)
T PRK11902 275 -LYRSLMLFGVLQAVSNLGYWVLAVTP-----------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSF 336 (402)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhcC-----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99988877766655544333221111 12233343333 344445555566666666666
Q ss_pred CCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588 196 DEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAA 257 (540)
Q Consensus 196 ~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~ 257 (540)
|.++ ++++....++|..+++.++|++.|..||+..|.+.+++.++++++...
T Consensus 337 ~~~~----------~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 337 SATQ----------YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred cHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 5432 345555556777766678999999999999998887777776655533
No 177
>PRK10133 L-fucose transporter; Provisional
Probab=98.95 E-value=2.5e-08 Score=106.55 Aligned_cols=168 Identities=14% Similarity=0.112 Sum_probs=124.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHh-hHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYL-VREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKL 118 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl-~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~ 118 (540)
+.++...+..++.....++...+++.|+ ++.+|++..+++.....+.++..++.+++|+++||+ |
T Consensus 258 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g------------- 323 (438)
T PRK10133 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-A------------- 323 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C-------------
Confidence 3344445555666677777778889996 567899999999999999999999999999999998 9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588 119 QGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA 198 (540)
Q Consensus 119 ~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~ 198 (540)
|||++..+.++.+++.++..+.. .. ..+....+.+++.+...|...+...+.++++
T Consensus 324 --~~~~l~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~ 379 (438)
T PRK10133 324 --PHKVLAAYALIAMALCLISAFAG---------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD 379 (438)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHcC---------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchh
Confidence 99999888777666655544331 11 2245667889999999999999999988764
Q ss_pred ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC-cchhhhHhHHHHHHHHH
Q 041588 199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG-WSVGFGIPTAFTICSII 253 (540)
Q Consensus 199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g-~~~~f~i~~~~~~~~~i 253 (540)
. +.+-++... ..+|+.++|.+.|++.|..| -+..|.+..++.+..++
T Consensus 380 ~-------~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~ 427 (438)
T PRK10133 380 T-------KYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_pred h-------ccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 2 333333332 33678888899999999887 67888766555444333
No 178
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.95 E-value=2.8e-08 Score=105.84 Aligned_cols=164 Identities=16% Similarity=0.181 Sum_probs=134.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
|.+..+++..++..+++....+.++.|.+..+|.+ ...+.+..+..+...++.++.++++||+ |
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-g-------------- 288 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-G-------------- 288 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-c--------------
Confidence 56677788888888888888888888888888877 4556777778888899999999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
+||++..+.++.+++.+++.+... .+.+.+++..++.+++.+...+...++.+|..+.++
T Consensus 289 -k~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e 348 (428)
T PF13347_consen 289 -KKKVYIIGLLLAALGFLLLFFLGP-------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDE 348 (428)
T ss_pred -ceeehhhhHHHHHHHHHHHHHHHh-------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHH
Confidence 999999999999999988887721 356778888889999999999999999999998654
Q ss_pred hH-HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcch
Q 041588 200 EK-EAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSV 239 (540)
Q Consensus 200 ~~-~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~ 239 (540)
.+ .+++.+..++.+.+...+|..+++.+.+.+.+..||..
T Consensus 349 ~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~~ 389 (428)
T PF13347_consen 349 WKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYDA 389 (428)
T ss_pred HhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcCC
Confidence 32 12235778888999999999999999998877666553
No 179
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.94 E-value=1.4e-06 Score=91.99 Aligned_cols=181 Identities=12% Similarity=0.104 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccch
Q 041588 43 PFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRF 122 (540)
Q Consensus 43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~ 122 (540)
..--...+..++.+..+..++..|.++..|++...+|.+..+.-+.-.+.-|+.|.++||. . -+-..||
T Consensus 15 i~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t-~----------~r~GrfR 83 (467)
T COG2211 15 IGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRT-R----------SRWGRFR 83 (467)
T ss_pred HhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeeccc-c----------ccccccc
Confidence 4455677888888888999999999999999999999999999999999999999999975 2 0111244
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHH
Q 041588 123 RTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKE 202 (540)
Q Consensus 123 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~ 202 (540)
+-++++.+..++..+++..+.. . ..+......++.-.+.++++..+.-...++.+++-++.+
T Consensus 84 P~lL~g~ip~~i~~~l~F~~p~--~-------------~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~--- 145 (467)
T COG2211 84 PWLLWGAIPFAIVAVLLFITPD--F-------------SMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ--- 145 (467)
T ss_pred HHHHHHhHHHHHHHHHHHcCCC--c-------------ccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH---
Confidence 5555666777777777776521 0 012344555566677889998888888898888875543
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh-------ccCcchhhhHhHHHHHHHHHH
Q 041588 203 AIQKYVFFNWFFFAINMGAIFGITVLVYIQE-------QKGWSVGFGIPTAFTICSIII 254 (540)
Q Consensus 203 ~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~-------~~g~~~~f~i~~~~~~~~~i~ 254 (540)
+|.+..+|-..+.++|.++...+.+.+.. ..||+..-.+.+++.++..+.
T Consensus 146 --ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~ 202 (467)
T COG2211 146 --ERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLF 202 (467)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 28899999888889987776655554443 235555544444444444443
No 180
>PRK10054 putative transporter; Provisional
Probab=98.94 E-value=1.7e-08 Score=106.35 Aligned_cols=174 Identities=12% Similarity=-0.023 Sum_probs=125.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHh--cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhh
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVRE--MHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFK 117 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~--lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~ 117 (540)
|.++...+..++..+.+.....+++.|+... .+.+....+..............++.|++.||. |
T Consensus 206 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~------------ 272 (395)
T PRK10054 206 KALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-N------------ 272 (395)
T ss_pred ceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-C------------
Confidence 4455555556666666665666777777543 445555666666666666666678889999998 9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588 118 LQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE 197 (540)
Q Consensus 118 ~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~ 197 (540)
+|+.+.++..+..++...+.... .+.+.++++..+.++|.+...|...+.+.+..|+
T Consensus 273 ---~~~~l~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~ 329 (395)
T PRK10054 273 ---IRPLMTAGTLCFVIGLVGFIFSG--------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPP 329 (395)
T ss_pred ---chhHHHHHHHHHHHHHHHHHHcc--------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCc
Confidence 99999888888888777665431 1344456677788888887778888888888887
Q ss_pred CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHH
Q 041588 198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVA 256 (540)
Q Consensus 198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~ 256 (540)
+. ++++++... ...+|..+||.++|++.|+.|....|++.+++..++++..+
T Consensus 330 ~~------~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 330 GM------KASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred cc------ceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 66 788877654 56689999999999999999988888775555555544443
No 181
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.92 E-value=9.2e-08 Score=100.75 Aligned_cols=167 Identities=10% Similarity=0.014 Sum_probs=117.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+.++...+..++....+++...+++.++.+++|++..+++........+..++.++.|++.||. +
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~-------------- 280 (394)
T PRK10213 216 PGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-V-------------- 280 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-c--------------
Confidence 4455555555566666666667764444467899999999988888888999999999999995 4
Q ss_pred cchHHHHHHHHHHHH-HHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588 120 GRFRTLVVFSCIYSV-GMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA 198 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~ 198 (540)
|+ .++.+..+..+ +.++.... .+.+.+.++.++.|++.+...+...+++.+..|++
T Consensus 281 -~~-~l~~~~~~~~~~~~~l~~~~---------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~ 337 (394)
T PRK10213 281 -KL-ALAGAPLVLAVSALVLTLWG---------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ 337 (394)
T ss_pred -hh-HHHHHHHHHHHHHHHHHHHh---------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc
Confidence 44 44444443333 33333222 12455666777888898888888888888777643
Q ss_pred ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHH
Q 041588 199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICS 251 (540)
Q Consensus 199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~ 251 (540)
.+...+++....++|..+||.++|++.|..|+...+..++++.++.
T Consensus 338 -------~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 338 -------AEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT 383 (394)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence 3445566667778999999999999999999888887766554433
No 182
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.92 E-value=3.1e-08 Score=104.55 Aligned_cols=155 Identities=10% Similarity=0.047 Sum_probs=107.3
Q ss_pred HHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHH
Q 041588 57 FAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGM 136 (540)
Q Consensus 57 y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~ 136 (540)
.....++|.|+++..+ +..+.+.+.+.............+++.||.++ .++.+..+.++..++.
T Consensus 225 ~~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~---------------~~~~~~~~~~~~~~~~ 288 (400)
T PRK11646 225 VQVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFR---------------LEHRLMAGLLIMSLSM 288 (400)
T ss_pred HHHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------hhHHHHHHHHHHHHHH
Confidence 3345678899877655 66777777766655555444444555555436 6777777777777777
Q ss_pred HHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHH
Q 041588 137 VLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFA 216 (540)
Q Consensus 137 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~ 216 (540)
+++.... +...+.+...+.++|.+...|...++..+..|+++ |++++++++..
T Consensus 289 ~~l~~~~---------------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~ 341 (400)
T PRK11646 289 FPIGMVS---------------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLG 341 (400)
T ss_pred HHHHHhh---------------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHH
Confidence 6665541 23444555566777877777888899999999877 99999999999
Q ss_pred HHHHHHHHHHHHHhhhhcc---C-cchhhhHhHHHHHHHHHH
Q 041588 217 INMGAIFGITVLVYIQEQK---G-WSVGFGIPTAFTICSIII 254 (540)
Q Consensus 217 ~~iG~~i~p~v~~~l~~~~---g-~~~~f~i~~~~~~~~~i~ 254 (540)
.++|..+||.+.|++.|+. + ....+++..+..+++.++
T Consensus 342 ~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 342 LALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 9999999999999998874 2 244444444444444443
No 183
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.91 E-value=6.2e-08 Score=101.16 Aligned_cols=170 Identities=14% Similarity=-0.041 Sum_probs=113.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+.+|.+.+..++....+|++..|+|.|+++ .|++.. ++....+..... .+..++++||. .+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g---~~g~~~~~d~~-~r~------------ 253 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAG---LIGVAVIPDRV-ARA------------ 253 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHH---HHHHHHhhHHh-hhh------------
Confidence 667888899999999999999999999964 678765 555554444433 34468899987 500
Q ss_pred cchHHHHH-HHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588 120 GRFRTLVV-FSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA 198 (540)
Q Consensus 120 ~r~~~i~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~ 198 (540)
+||+.... ..++..++.+.+.... +....++...+.+++.....+...++.+|.+|++
T Consensus 254 ~~r~~~~~~~~~~~a~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~ 312 (368)
T TIGR00903 254 GLRSIYIRAAALLIAAFFLALAFEL---------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKE 312 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcc---------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchh
Confidence 02333222 3333333333333221 1222233344455556666677888999999998
Q ss_pred ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHH
Q 041588 199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVA 256 (540)
Q Consensus 199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~ 256 (540)
. |+++.++.+...++|+.++|.+.+.+.. |....|.+.++..+++.++.+
T Consensus 313 ~------rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 313 L------HGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred h------cCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence 7 9999999999999999999999887773 666667666666555555543
No 184
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.91 E-value=3.5e-08 Score=117.88 Aligned_cols=165 Identities=9% Similarity=-0.050 Sum_probs=129.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChh-HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLP-TAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKL 118 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~-~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~ 118 (540)
+.++..++..++.....+.+..+++.|+.+.+|++.. .++++.+...++..++.++.|+++||+ +
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~------------- 297 (1146)
T PRK08633 232 RVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-I------------- 297 (1146)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-e-------------
Confidence 4455555555566666667788899999999999998 899999999999999999999999998 9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588 119 QGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA 198 (540)
Q Consensus 119 ~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~ 198 (540)
+++++.++.++.+++.+++.... +...+++..++.|++.++..+...+++.+..|++
T Consensus 298 --~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~ 354 (1146)
T PRK08633 298 --ELGLVPLGALGLALSLFLLPTAP---------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEK 354 (1146)
T ss_pred --EccchhHHHHHHHHHHHHHHHhh---------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCcc
Confidence 99998888887777777766552 3455667778888888888888889999999888
Q ss_pred ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhc-cCcchhhhHhHHH
Q 041588 199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQ-KGWSVGFGIPTAF 247 (540)
Q Consensus 199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~-~g~~~~f~i~~~~ 247 (540)
. |+++++++++..++|+++++.+++.+... .++...|++.+.+
T Consensus 355 ~------rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 398 (1146)
T PRK08633 355 E------LGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALV 398 (1146)
T ss_pred c------hhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 7 99999999999999998888777766442 3444455544333
No 185
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=98.90 E-value=2.6e-07 Score=97.72 Aligned_cols=191 Identities=16% Similarity=0.168 Sum_probs=138.9
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcch
Q 041588 32 DKRTTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVR-EMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALK 110 (540)
Q Consensus 32 ~~~~~~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~-~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~ 110 (540)
.+..+.+||++++..+..++..+.++.+.+-.-.|+.+ +.+-+.+..|++++....+..++.+..|+-+-|. |
T Consensus 26 ~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~----- 99 (488)
T KOG2325|consen 26 LDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-G----- 99 (488)
T ss_pred ccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-C-----
Confidence 44567789999999999999988888777777788864 4677788889999999999999999999999997 6
Q ss_pred hhhhhhhcccc-hHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhh
Q 041588 111 HVHAIFKLQGR-FRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSS 189 (540)
Q Consensus 111 ~~~~~~~~~~r-~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~ 189 (540)
+ |+.++.+.++.++|.++.......|. .....++++|++.|+|.|.. +..-+
T Consensus 100 ----------~~k~Pli~s~ii~~~g~llY~~l~~~~~----------------~~~y~mL~~R~l~Gvg~~n~-a~lR~ 152 (488)
T KOG2325|consen 100 ----------SVKKPLIVSFLIAIIGNLLYLALAYVPN----------------GVKYLMLVARILTGVGVGNF-AVLRA 152 (488)
T ss_pred ----------CcccCHHHHHHHHHHHHHHHHHHHhccc----------------chHHHHHHHHHHcCcCcccH-HHHHH
Confidence 4 88889999999999998854433222 25788899999999987653 56667
Q ss_pred hhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHH----HHhhhhc---------cCcchhhhHhHHHHHHHHHHHH
Q 041588 190 FGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITV----LVYIQEQ---------KGWSVGFGIPTAFTICSIIIVA 256 (540)
Q Consensus 190 ~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v----~~~l~~~---------~g~~~~f~i~~~~~~~~~i~~~ 256 (540)
+.+|---.++ |.++++....+..+|..+||.+ ++...+. .-|..+-|+.++..++.+++..
T Consensus 153 Y~a~~s~~~d------R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~ 226 (488)
T KOG2325|consen 153 YIADASTVED------RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIIL 226 (488)
T ss_pred HHHhccCccc------hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHH
Confidence 7777655555 6677666555555555555554 4433221 1245566777777777777665
Q ss_pred hcCcc
Q 041588 257 AGFPY 261 (540)
Q Consensus 257 ~~~~~ 261 (540)
+..++
T Consensus 227 ~~f~E 231 (488)
T KOG2325|consen 227 FFFKE 231 (488)
T ss_pred hheee
Confidence 55443
No 186
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=98.89 E-value=5.9e-08 Score=105.47 Aligned_cols=173 Identities=13% Similarity=0.079 Sum_probs=140.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccc
Q 041588 41 ASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQG 120 (540)
Q Consensus 41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~ 120 (540)
.+..+++..++.++....+...+|.+..+.+|.+....|++.+.+.++..++.++.+++.+++ +
T Consensus 219 ~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~--------------- 282 (524)
T PF05977_consen 219 PLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-S--------------- 282 (524)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-C---------------
Confidence 334444444555555555667789999999999999999999999999999999999999997 8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCCh
Q 041588 121 RFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADE 200 (540)
Q Consensus 121 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~ 200 (540)
+++.+..+.+++.++++.++++ .+.+..++++++.|.+.........+......|++.
T Consensus 283 ~~~lv~~~~~~~a~~~~~lal~---------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~- 340 (524)
T PF05977_consen 283 SRRLVLLASLLFALALLLLALS---------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV- 340 (524)
T ss_pred cchhhHHHHHHHHHHHHHHhcc---------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH-
Confidence 8898888888888888777766 245666777778888888777777788888888887
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHH
Q 041588 201 KEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVA 256 (540)
Q Consensus 201 ~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~ 256 (540)
|++.++++....+.+..+|..+.|++.+..|-+..+.++++..+++.++..
T Consensus 341 -----~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 341 -----RGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred -----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988888877766665555543
No 187
>PRK09848 glucuronide transporter; Provisional
Probab=98.88 E-value=4.4e-08 Score=104.89 Aligned_cols=164 Identities=12% Similarity=0.128 Sum_probs=124.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
|.++...+..++...+++......+.|+++.+|.+....+...........++.++.++++||+ |
T Consensus 228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g-------------- 292 (448)
T PRK09848 228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-G-------------- 292 (448)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------------
Confidence 4556666777777777777777778888888888776555544444556777899999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
+|+++.++.++..++.+++.+.. ..+.+.++++.++.++|.+...+...++.+|..|.++
T Consensus 293 -~~~~~~~g~~~~~i~~~~~~~~~-------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~ 352 (448)
T PRK09848 293 -KKNTFLIGALLGTCGYLLFFWVS-------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGE 352 (448)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHcC-------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 99999999988888877766431 1234556667778899999999999999998887543
Q ss_pred hHH-HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcc
Q 041588 200 EKE-AIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWS 238 (540)
Q Consensus 200 ~~~-~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~ 238 (540)
.+. .++.+..++.++++..+|..+++.+.+.+.+..||.
T Consensus 353 ~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~~ 392 (448)
T PRK09848 353 YLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYI 392 (448)
T ss_pred HhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 211 122577888999999999999999999887766663
No 188
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.88 E-value=1.4e-07 Score=94.91 Aligned_cols=167 Identities=18% Similarity=0.134 Sum_probs=132.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+..|.+.+-.-+.+..||.+..|+|.++. +.|+|..++|.+++..........+++-++++|...
T Consensus 208 ~~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n-------------- 272 (395)
T COG2807 208 PLAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKN-------------- 272 (395)
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcc--------------
Confidence 44588888889999999999999999987 589999999999999999999999999999999856
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
+|+..+.....+.+|.+-+.+.. .+...+. .+++|+|.|+..|....++.+..++.+
T Consensus 273 -~r~~~~~~~~~~l~G~~G~~~~P--------------------~~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~ 329 (395)
T COG2807 273 -QRPLVVLALLLMLVGLVGLLLAP--------------------GQLPILW--ALLLGLGQGGAFPLALTLILLRSSDAA 329 (395)
T ss_pred -cchHHHHHHHHHHHHHHHHHHhh--------------------hhHHHHH--HHHHhCccchHHHHHHHHHHhhcCChH
Confidence 88888888888999888887652 1222333 578999999999999999988765443
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC-cchhhhHhHHHHH
Q 041588 200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG-WSVGFGIPTAFTI 249 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g-~~~~f~i~~~~~~ 249 (540)
+ -+..-++-+-.+.+=+.+||.+.|++.|.+| |....+..+.+.+
T Consensus 330 --~---Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i 375 (395)
T COG2807 330 --I---AAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATL 375 (395)
T ss_pred --H---HHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHH
Confidence 2 3444555555555667789999999999876 8877765444433
No 189
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.85 E-value=5.9e-08 Score=115.98 Aligned_cols=184 Identities=10% Similarity=-0.118 Sum_probs=132.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+.++..++..++..+.++++.+++|.|+.+.+|.+...++.+.+.+.++..++.++.|+++|+. +
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~-------------- 289 (1140)
T PRK06814 225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-I-------------- 289 (1140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-e--------------
Confidence 5667777777777788888889999999999999999999999999999999999999999987 6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCC-CCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKE-RPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA 198 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~ 198 (540)
+++.+..+.++..++.+.+.+... ....++..-. ..+.. ...+.+.++++.++.|++.+...+...+++.+..|++
T Consensus 290 -~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~ 366 (1140)
T PRK06814 290 -TLLYVPIGALLMGLFGLDLAFASS-SVPAEPAQLKSILVFL-SKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPA 366 (1140)
T ss_pred -eeeeehHHHHHHHHHHHHHHhccc-ccccccccccchhhhh-cccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcc
Confidence 667666666555554444433200 0000000000 00000 0023455667778889999988888999999999998
Q ss_pred ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh-ccCcchhhhHhHHH
Q 041588 199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQE-QKGWSVGFGIPTAF 247 (540)
Q Consensus 199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~-~~g~~~~f~i~~~~ 247 (540)
. ++++++.++...++|..+++.+.+.+.+ ..++...|++.+++
T Consensus 367 ~------~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 367 H------RARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred c------ceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 8 9999999999999999999999998874 34566665544443
No 190
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.81 E-value=1.5e-08 Score=103.81 Aligned_cols=143 Identities=20% Similarity=0.193 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCC-hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccc
Q 041588 43 PFIIVNEVAERLAFFAIAVNMTAYLVREMHQS-LPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGR 121 (540)
Q Consensus 43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s-~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r 121 (540)
|.++...+.....++....++|.|+.+++|++ ..+.+.......+...++.++.|+++||+ | +
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~---------------~ 272 (352)
T PF07690_consen 209 WILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-G---------------R 272 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T---------------C
T ss_pred hhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C---------------c
Confidence 44555556666778888899999999999999 78999999999999999999999999997 9 8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChH
Q 041588 122 FRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEK 201 (540)
Q Consensus 122 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~ 201 (540)
++.+.+......++.+.+..... ..+....+...++.|++.+...+...++..|.+|+++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-- 332 (352)
T PF07690_consen 273 RRRLLIAILLLILGALGLLLLPF------------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY-- 332 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSHH------------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH--
Confidence 88888877776666666554421 1234556667778889999889999999999998876
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHH
Q 041588 202 EAIQKYVFFNWFFFAINMGAIFGI 225 (540)
Q Consensus 202 ~~~~r~~~~~~~~~~~~iG~~i~p 225 (540)
+++..++++...++|+.++|
T Consensus 333 ----~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 333 ----RGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999987
No 191
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=98.78 E-value=4.8e-06 Score=88.85 Aligned_cols=164 Identities=12% Similarity=0.078 Sum_probs=115.2
Q ss_pred HHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhc--CCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHH
Q 041588 63 MTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYL--GQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLT 140 (540)
Q Consensus 63 l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~--G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~ 140 (540)
...|+.+++|++..+.....++...-. ..-++.|.++|.+- | + .||+-++++.++..++...++
T Consensus 12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G---~----------rr~~Y~~i~~~~~~~~~~~~~ 77 (433)
T PF03092_consen 12 IYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFG---Y----------RRKPYMIIGWLLGAVSALVLA 77 (433)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccC---C----------cchHHHHHHHHHHHHHHHHHH
Confidence 346788999999998877665554443 44567889999871 2 0 055555566666655555555
Q ss_pred HhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHH
Q 041588 141 VSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMG 220 (540)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG 220 (540)
..... ..+.....+.+.+..+|.+....+.-++.+|...++... ++..-++.+....+|
T Consensus 78 ~~~~~-----------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G 136 (433)
T PF03092_consen 78 LLPAS-----------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVG 136 (433)
T ss_pred hcccc-----------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHH
Confidence 44210 122344555666778888888888888888887555432 677778888899999
Q ss_pred HHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCcc
Q 041588 221 AIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPY 261 (540)
Q Consensus 221 ~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~ 261 (540)
++++..+.|.+.+..+++..|.+.+++..+..+..++..++
T Consensus 137 ~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 137 SLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999998877776666665555554
No 192
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.76 E-value=5.4e-07 Score=94.89 Aligned_cols=163 Identities=10% Similarity=-0.126 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHH
Q 041588 53 RLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIY 132 (540)
Q Consensus 53 ~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~ 132 (540)
..........++.|+.+.+|.+..++|.+.....++..++.++.|++.||. + +++++..+. +.
T Consensus 218 ~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~---------------~~~~~~~g~-~~ 280 (393)
T PRK11195 218 WGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-T---------------VLRVLPAGI-LM 280 (393)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-c---------------ccchHHHHH-HH
Confidence 344455556677888888999999999999999999999999999999997 8 888887764 33
Q ss_pred HHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHH
Q 041588 133 SVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNW 212 (540)
Q Consensus 133 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~ 212 (540)
.+..+.+... .+.+...+..++.|++.+...+...+...+.-|++. +++++++.
T Consensus 281 ~~~~~~~~~~---------------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~ 334 (393)
T PRK11195 281 GLVVLLMALQ---------------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAV 334 (393)
T ss_pred HHHHHHHHHH---------------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHH
Confidence 3333333322 123445556667888888877777777776543321 16889999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcC
Q 041588 213 FFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGF 259 (540)
Q Consensus 213 ~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~ 259 (540)
.+...++|..++..+.+.+ +..|=+..+.+..+..+++..+....+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (393)
T PRK11195 335 QNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALLWR 380 (393)
T ss_pred HhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888855 567877777776666555555544433
No 193
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.74 E-value=4.5e-07 Score=96.50 Aligned_cols=193 Identities=12% Similarity=0.022 Sum_probs=126.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhh
Q 041588 38 GWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFK 117 (540)
Q Consensus 38 ~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~ 117 (540)
.++..+..+...++..+.--....+....+-..-|++..++.........+..++++++.++-||+ |
T Consensus 267 lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-g------------ 333 (485)
T KOG0569|consen 267 LRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-G------------ 333 (485)
T ss_pred hhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C------------
Confidence 344555555555555444333333334445567899999999999889999999999999999998 9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcC-CCccchhhhhhccCC
Q 041588 118 LQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTR-DIKPCVSSFGADQYD 196 (540)
Q Consensus 118 ~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g-~~~~~~~~~~~d~~~ 196 (540)
||+.++++..++.+..+++.....+.... +..-....++++++..++.+ +..|...-+.+|++|
T Consensus 334 ---RRpLll~~~~~~~~~~~~~~~~~~l~~~~------------~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~ 398 (485)
T KOG0569|consen 334 ---RRPLLLISLSLMAVALLLMSIALFLSNSF------------GSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFP 398 (485)
T ss_pred ---CcHHHHHHHHHHHHHHHHHHHHHHHHHHh------------hhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCC
Confidence 99999999999888888777664322100 00000112334444333333 345777888899999
Q ss_pred CCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCcccccc
Q 041588 197 EADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQ 265 (540)
Q Consensus 197 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~~~ 265 (540)
++. |..+.++-.....+..++-...-..+.+..|- ..|.+.++..++..+..+...|+.|.+
T Consensus 399 ~~~------R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr 460 (485)
T KOG0569|consen 399 QSA------RSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGR 460 (485)
T ss_pred ccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCC
Confidence 988 88888876666666666555566667777664 455555555555555555666666544
No 194
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=98.74 E-value=2.6e-07 Score=92.84 Aligned_cols=174 Identities=13% Similarity=0.103 Sum_probs=113.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHh--cC-----------------CChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVRE--MH-----------------QSLPTAGTHVTDWIGAAYVLTILGAFLA 100 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~--lg-----------------~s~~~a~~~~~~~~~~~~~~~~~gG~la 100 (540)
|.-+.+....|.+.++||++.-......+.. .| .+...--.-..+-...-.-+.++.|++.
T Consensus 326 kttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iv 405 (528)
T KOG0253|consen 326 KTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIV 405 (528)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHH
Confidence 3445666778889999999754332222211 11 1111111222333445667889999999
Q ss_pred hhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhc
Q 041588 101 DAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGT 180 (540)
Q Consensus 101 D~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 180 (540)
||+ | ||+++....+++.+..+++...- . .+....+++.+++++..+.
T Consensus 406 erl-G---------------RKkTMal~l~~f~iflfll~~c~----------------~-rn~~tvllf~arafisg~f 452 (528)
T KOG0253|consen 406 ERL-G---------------RKKTMALSLILFGIFLFLLTTCK----------------T-RNAYTVLLFTARAFISGAF 452 (528)
T ss_pred HHh-c---------------chhHHHHHHHHHHHHHHHHHHhc----------------C-cchhHHHHHHHHHHHhchh
Confidence 996 9 99999999999888877776541 1 1123345566666655443
Q ss_pred CCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588 181 RDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG 258 (540)
Q Consensus 181 g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~ 258 (540)
.+.+.+..|.||... |+++.|.-..+.-+|+++.|.++ +.....-..+..+..++.+++.+...++
T Consensus 453 ----qvaYvYtPEVyPTav------RatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcff 518 (528)
T KOG0253|consen 453 ----QVAYVYTPEVYPTAV------RATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFF 518 (528)
T ss_pred ----eEEEEecCcccchhh------hhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheee
Confidence 567788899999998 99999998889999999999998 3333333444445555556666655443
No 195
>PRK11043 putative transporter; Provisional
Probab=98.73 E-value=8.4e-07 Score=93.36 Aligned_cols=159 Identities=14% Similarity=-0.012 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccch
Q 041588 43 PFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRF 122 (540)
Q Consensus 43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~ 122 (540)
+...+...+....++....++|.|++ +.|++..+.+...........++.++++++.||+ | +|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~---------------~~ 268 (401)
T PRK11043 206 LGNVLIFAACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-G---------------GE 268 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C---------------HH
Confidence 33333334444556666778888875 5899999998877777778888899999999998 9 98
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHH
Q 041588 123 RTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKE 202 (540)
Q Consensus 123 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~ 202 (540)
+.+....+...++.+.+....... ..+...++++..+.+++.+...+...+...+..|+ +
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--- 328 (401)
T PRK11043 269 QLLPWLLVLFAVSVIAIWLASLLS----------------HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-A--- 328 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-c---
Confidence 877666555555444333221100 01234445556677888888778777777777654 3
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhh
Q 041588 203 AIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGF 241 (540)
Q Consensus 203 ~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f 241 (540)
++++.++++.....++.+++.+.+.+.+.......+
T Consensus 329 ---~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~ 364 (401)
T PRK11043 329 ---TGKAAALQNTLQLGLCFLASLLVSALISTPLLTTGS 364 (401)
T ss_pred ---ChHHHHHHHHHHHHHHHHHHHHHHHccCCChhHHHH
Confidence 788999988888888888888888887654444433
No 196
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=98.73 E-value=1.2e-07 Score=102.71 Aligned_cols=176 Identities=13% Similarity=0.068 Sum_probs=145.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+.++.+++...+..++++....+++.|.. ..|++..+++.+.++..+...++.++.|+++|+. .
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~-------------- 361 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-G-------------- 361 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-c--------------
Confidence 67788888999999999999999999988 7999999999999999999999999999999997 4
Q ss_pred cchHHHH--HHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588 120 GRFRTLV--VFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE 197 (540)
Q Consensus 120 ~r~~~i~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~ 197 (540)
.++..+ ++.++..++.+.+++. .+...+...-++.|+..|.+.+.......|..+.
T Consensus 362 -~~~~~~~~~~ll~~gl~~~~~p~~---------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~ 419 (509)
T KOG2504|consen 362 -IRALVLFLLTLLIAGLARLFLPFA---------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGL 419 (509)
T ss_pred -cchHHHHHHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence 333333 3334444455444444 3456677777788888888888887888999988
Q ss_pred CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC-cchhhhHhHHHHHHHHHHHHhcC
Q 041588 198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG-WSVGFGIPTAFTICSIIIVAAGF 259 (540)
Q Consensus 198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g-~~~~f~i~~~~~~~~~i~~~~~~ 259 (540)
++ ...++++..+...+++++||.++|++.|.+| |...|+.+.+..+++.+..+...
T Consensus 420 ~~------l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 420 EK------LSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred hh------cchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 76 8899999999999999999999999999988 99999999998888877665554
No 197
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.71 E-value=8.7e-07 Score=92.17 Aligned_cols=150 Identities=15% Similarity=0.009 Sum_probs=97.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+..+..++..++.....+....+.|.|+.+.+|++..+++.......+...++.+++|+++||+ |
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g-------------- 258 (377)
T PRK11102 194 KRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-G-------------- 258 (377)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------------
Confidence 3445555555566666666677778888888999999999999999999999999999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
||+++.++..+..+..+.+......+ .+.....++..+.+.+.+...+.......|..| +.
T Consensus 259 -~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 319 (377)
T PRK11102 259 -ALNMLRFGLWIQFIMGIWLVVSALLD-----------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM 319 (377)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHh-----------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc
Confidence 99999988876544333322221000 123333444444444444445555556667666 33
Q ss_pred hHHHHhhhhhHHHHHHH-HHHHHHHHHHHHH
Q 041588 200 EKEAIQKYVFFNWFFFA-INMGAIFGITVLV 229 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~-~~iG~~i~p~v~~ 229 (540)
+++..+.++.. ..+|+.+++.+++
T Consensus 320 ------~g~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 320 ------AGTASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred ------chHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67777775543 3466666666543
No 198
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.71 E-value=2.7e-07 Score=99.72 Aligned_cols=166 Identities=14% Similarity=0.008 Sum_probs=118.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
|.++.+++..++.....+...+..+.|.+..++ +....+.+.....+...++.++.++++||+ |
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g-------------- 294 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-S-------------- 294 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C--------------
Confidence 666777777787887777776666655544444 455555666666677888889999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
+|+++.++..+.+++.+.+......+ ..+...+++..++.+++.+...+...++.+|..|.++
T Consensus 295 -kk~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e 357 (473)
T PRK10429 295 -RRILWAGASIFPVLSCGVLLLMGLAA----------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGE 357 (473)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHhccC----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 99999988877776666554431111 1234555666677888888888889999999977542
Q ss_pred hH-HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcc
Q 041588 200 EK-EAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWS 238 (540)
Q Consensus 200 ~~-~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~ 238 (540)
-+ .+++.+..++...+...+|..+++.+.|++.+..||.
T Consensus 358 ~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy~ 397 (473)
T PRK10429 358 YKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGYV 397 (473)
T ss_pred HhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 11 1122456788899999999999999999988777763
No 199
>TIGR00898 2A0119 cation transport protein.
Probab=98.71 E-value=2e-07 Score=101.23 Aligned_cols=131 Identities=13% Similarity=0.033 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCC
Q 041588 84 DWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNG 163 (540)
Q Consensus 84 ~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 163 (540)
...+....+.+++++++||+ | ||+++.++.++..++.+++.....
T Consensus 363 ~~~~~~i~~~~~~~~l~dr~-g---------------rr~~~~~~~~~~~~~~l~~~~~~~------------------- 407 (505)
T TIGR00898 363 ISGLVELPAKLITLLLIDRL-G---------------RRYTMAASLLLAGVALLLLLFVPV------------------- 407 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHh-C---------------CHHHHHHHHHHHHHHHHHHHHcCC-------------------
Confidence 34455667888999999998 9 999999998888887776665421
Q ss_pred chhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhH
Q 041588 164 GQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGI 243 (540)
Q Consensus 164 ~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i 243 (540)
.......+...+.+++.+...+...++.+|.+|++. |++++++.+....+|++++|.+.+ +. ..++...+.+
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~ 479 (505)
T TIGR00898 408 DLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVL 479 (505)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHH
Confidence 111223333344445555556777888899999887 999999999999999999999988 43 3456667766
Q ss_pred hHHHHHHHHHHHHh
Q 041588 244 PTAFTICSIIIVAA 257 (540)
Q Consensus 244 ~~~~~~~~~i~~~~ 257 (540)
.++..+++.++.++
T Consensus 480 ~~~~~~~~~~~~~~ 493 (505)
T TIGR00898 480 FGGLALLAGILTLF 493 (505)
T ss_pred HHHHHHHHHHHHHc
Confidence 66665555555443
No 200
>PRK09669 putative symporter YagG; Provisional
Probab=98.70 E-value=5e-07 Score=96.69 Aligned_cols=163 Identities=14% Similarity=0.073 Sum_probs=109.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
|.++.+++..++...+........+.|.+..++ +....+.+.....+...++.+++++++||+ |
T Consensus 229 ~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g-------------- 292 (444)
T PRK09669 229 SQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKF-D-------------- 292 (444)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------------
Confidence 445555555555555554333433333333333 233334444555666778888999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
+|+.+.++.++..++.+.+.+.. ..+...+++..++.+++.+...+...++.+|..|.++
T Consensus 293 -k~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e 352 (444)
T PRK09669 293 -RVRAFKWTIVAFVILSALIFFIP-------------------PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEE 352 (444)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHhC-------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999888766655443333221 1245556777778999999999999999999987543
Q ss_pred hH-HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcc
Q 041588 200 EK-EAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWS 238 (540)
Q Consensus 200 ~~-~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~ 238 (540)
.+ .+++.+..++.+.++.++|..+++.++|++.+..||.
T Consensus 353 ~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 353 KRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV 392 (444)
T ss_pred hhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 22 1222466788899999999999999999998887774
No 201
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.69 E-value=2.5e-07 Score=95.68 Aligned_cols=145 Identities=12% Similarity=-0.017 Sum_probs=110.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHH-HHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 41 ASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWI-GAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~-~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
..+.+.+..++...+++...++++.|+.+ +|++..+.+.+..+.. ....++.+++|+++||+ |
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g-------------- 273 (356)
T TIGR00901 210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-N-------------- 273 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-h--------------
Confidence 46666667777789999999999999987 9999999988777665 56778899999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
||+.+.++.++..++..++....+..... +.+..+...+..+.++.+++.+...+...++..+.+|++.
T Consensus 274 -~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~ 342 (356)
T TIGR00901 274 -ILYALLLFGIVQALTNAGFVWLASNGHHD----------GITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF 342 (356)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhcCccc----------ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc
Confidence 99999998888777666555432100000 0000134455666677889999999999999999999988
Q ss_pred hHHHHhhhhhHHHHHHHHH
Q 041588 200 EKEAIQKYVFFNWFFFAIN 218 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~ 218 (540)
|++.+++++...|
T Consensus 343 ------~g~~~g~~~~~~~ 355 (356)
T TIGR00901 343 ------GATQMALLSSLSA 355 (356)
T ss_pred ------cHHHHHHHHHHHh
Confidence 9999999877665
No 202
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.68 E-value=2e-05 Score=81.38 Aligned_cols=144 Identities=13% Similarity=0.013 Sum_probs=97.3
Q ss_pred hhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccch--HHHHHHHHHHHHHHHHHHHhcc
Q 041588 67 LVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRF--RTLVVFSCIYSVGMVLLTVSGS 144 (540)
Q Consensus 67 l~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~--~~i~~~~~~~~~~~~~l~~~~~ 144 (540)
+..|++++..-.+.++........ ..+..|+.||+. + |..|.| +-+..|..+...+..+.+.+..
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~-----------s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~ 72 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-P-----------SILGWRRTPYIWGGTLLQAGGLAIAPFALL 72 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-c-----------ccCcCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888887776655 577889999986 3 222233 3355566677777666665532
Q ss_pred cCCCCCCCCCCCCCccCCCchhH--HHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHH
Q 041588 145 LDSLRPPACKERPCVEVNGGQNG--FLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAI 222 (540)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~ 222 (540)
.....- + .. ......+ ...++..+.|+|.+...++..++.+|..|+++ |....++.+...-+|.+
T Consensus 73 ~l~~~~----~-~~--~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~i 139 (403)
T PF03209_consen 73 LLAESG----Q-QS--SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGII 139 (403)
T ss_pred HHcccc----c-cc--ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHH
Confidence 211100 0 00 0011122 33344456777777888899999999999887 99999999999999999
Q ss_pred HHHHHHHhhhhccC
Q 041588 223 FGITVLVYIQEQKG 236 (540)
Q Consensus 223 i~p~v~~~l~~~~g 236 (540)
++..+.+.+.+.++
T Consensus 140 v~ai~~g~lL~~~s 153 (403)
T PF03209_consen 140 VSAIVFGRLLDPFS 153 (403)
T ss_pred HHHHHHHHHccccC
Confidence 99999998877665
No 203
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.65 E-value=2.1e-05 Score=81.19 Aligned_cols=127 Identities=15% Similarity=0.027 Sum_probs=82.1
Q ss_pred HHHHHHHhhHhcCC---Ch----hHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHH
Q 041588 60 AVNMTAYLVREMHQ---SL----PTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIY 132 (540)
Q Consensus 60 ~~~l~~yl~~~lg~---s~----~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~ 132 (540)
..++|.|+++..+- +. +..+...++......+..|+-|-++|.. | .|||.+-....+.
T Consensus 35 t~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g--------------~Rk~~~~~f~~i~ 99 (438)
T COG2270 35 TFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-G--------------PRKKFFGFFTAIG 99 (438)
T ss_pred eehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-C--------------CcchHHHHHHHHH
Confidence 35678898876654 32 2345566667777778888889999998 7 1455555565666
Q ss_pred HHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHH
Q 041588 133 SVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNW 212 (540)
Q Consensus 133 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~ 212 (540)
.+.+..+.... ++.+....++..++..++..+......++..|..++++-+ |.+..+
T Consensus 100 i~~~~~L~~i~------------------~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~----riS~lg- 156 (438)
T COG2270 100 IISTFLLWFIP------------------PGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMG----RISGLG- 156 (438)
T ss_pred HHHHHHHHHhC------------------CCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccC----cccccc-
Confidence 67777777662 1124455555566777888888888999999998876632 333333
Q ss_pred HHHHHHHHHHHHH
Q 041588 213 FFFAINMGAIFGI 225 (540)
Q Consensus 213 ~~~~~~iG~~i~p 225 (540)
+-...+|+.+.-
T Consensus 157 -~~~gylgs~i~l 168 (438)
T COG2270 157 -WALGYLGSVILL 168 (438)
T ss_pred -cccccccchHHH
Confidence 334445554443
No 204
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.65 E-value=7.2e-07 Score=94.53 Aligned_cols=164 Identities=12% Similarity=0.033 Sum_probs=116.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 41 ASPFIIVNEVAERLAFFAIAVNMTAYLVRE-MHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~-lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
.++...+..++...+..++.++++.|+.+. .+.+...++...+.+.....++.+++|+++||+ +
T Consensus 233 ~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~-------------- 297 (410)
T TIGR00885 233 HYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-A-------------- 297 (410)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C--------------
Confidence 344455555665555566778899998653 255555566667777788899999999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
+||++.++.++..+..++..... +. .....+.+.++..+.+.|...+...+..+++.
T Consensus 298 -~~~~l~i~~~~~~~~~ll~~~~~---------------------~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~ 354 (410)
T TIGR00885 298 -AHKVLMAYAIIGMALCLGSIFAG---------------------GH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT 354 (410)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHcC---------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99998888887777777666541 11 22455667778888888999999999887654
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhcc------CcchhhhHhHHHHHH
Q 041588 200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQK------GWSVGFGIPTAFTIC 250 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~------g~~~~f~i~~~~~~~ 250 (540)
+ .+-+..-++ .+|+.+.|.+.|++.|.. +.+..|.++.++.+.
T Consensus 355 ------~-~~s~~l~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~ 403 (410)
T TIGR00885 355 ------K-YGAAGLVMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAV 403 (410)
T ss_pred ------h-hhHHHHHHH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHH
Confidence 2 222222223 399999999999999954 478888876665443
No 205
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.64 E-value=1.8e-07 Score=96.79 Aligned_cols=142 Identities=11% Similarity=0.018 Sum_probs=105.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+..+.+.+..++....++++..+++.|+++.+|++..+++.+.....+...++.+++|+++||+ |
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g-------------- 289 (366)
T TIGR00886 225 RHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-G-------------- 289 (366)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-c--------------
Confidence 3456666666666677788889999999999999999999989889889999999999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
||+.+..+......+..++..... +..+....+....+.+++.|...+...++.++.+|. +
T Consensus 290 -~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~ 350 (366)
T TIGR00886 290 -GARKLLMSFLGVAMGAFLVVLGLV-----------------SPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRR-A 350 (366)
T ss_pred -cchhHHHHHHHHHHHHHHHHhcCC-----------------CcchHHHHHHHHHHHHHHhccccchhhhcchhhchh-h
Confidence 988888877766666655554311 001344445555556666666667777778888763 3
Q ss_pred hHHHHhhhhhHHHHHHHHHHHH
Q 041588 200 EKEAIQKYVFFNWFFFAINMGA 221 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~ 221 (540)
+++..++.+...++|+
T Consensus 351 ------~g~~~g~~~~~~~~g~ 366 (366)
T TIGR00886 351 ------TGAVSGLVGAIGNLGG 366 (366)
T ss_pred ------cccHHHHHHHhccCCC
Confidence 8889888888777763
No 206
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.63 E-value=2.3e-06 Score=89.74 Aligned_cols=73 Identities=10% Similarity=0.107 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHH
Q 041588 54 LAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYS 133 (540)
Q Consensus 54 ~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~ 133 (540)
...+....+.|.|+.+++|++..+.+...........++.++.|+++||+ | ||+.+.++.++..
T Consensus 217 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g---------------~~~~~~~~~~~~~ 280 (392)
T PRK10473 217 TVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-K---------------PRTLMLTSQVLFL 280 (392)
T ss_pred HHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C---------------HHHHHHHHHHHHH
Confidence 33334455667788888999999999888888888999999999999998 9 9999999988888
Q ss_pred HHHHHHHHh
Q 041588 134 VGMVLLTVS 142 (540)
Q Consensus 134 ~~~~~l~~~ 142 (540)
++.+++...
T Consensus 281 ~~~~~~~~~ 289 (392)
T PRK10473 281 AAGITLALS 289 (392)
T ss_pred HHHHHHHHH
Confidence 887777665
No 207
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=98.62 E-value=1.7e-05 Score=80.14 Aligned_cols=155 Identities=14% Similarity=0.036 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHH
Q 041588 49 EVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVF 128 (540)
Q Consensus 49 ~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~ 128 (540)
...+...+-.+.+.+..-+....|.+..+..++......+..++....|.++|++ | ||+...+.
T Consensus 86 gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-g---------------rr~~f~~T 149 (528)
T KOG0253|consen 86 GWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-G---------------RRKGFNLT 149 (528)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-h---------------cchhhhhh
Confidence 3334444444555555556677888999999999999999999999999999998 9 99988777
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhh
Q 041588 129 SCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYV 208 (540)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~ 208 (540)
.....+.-++-..+ .++..+++.+.+.++|.|+ .|...++-.+..|... |..
T Consensus 150 ~l~t~v~~~is~~s---------------------pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~ 201 (528)
T KOG0253|consen 150 FLVTGVFGVISGAS---------------------PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWL 201 (528)
T ss_pred HHHHHHHHHhhcCC---------------------CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCc
Confidence 65544443333322 3567788889999999999 7888888888888776 444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHH
Q 041588 209 FFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFT 248 (540)
Q Consensus 209 ~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~ 248 (540)
-.-.. ..-.+|.++...++=.+..+.||++......+-.
T Consensus 202 ~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl 240 (528)
T KOG0253|consen 202 LTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPL 240 (528)
T ss_pred chhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHH
Confidence 33333 4445667666666655667789998766555433
No 208
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.58 E-value=1.4e-05 Score=82.86 Aligned_cols=135 Identities=11% Similarity=0.066 Sum_probs=103.2
Q ss_pred HHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHH
Q 041588 62 NMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTV 141 (540)
Q Consensus 62 ~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~ 141 (540)
-...|..+.+| +...+.+...+|..++....+.+-|+.|++ | -|.+.+++..+..+|..+=.+
T Consensus 66 ~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-G---------------LR~a~llgt~ln~iGa~Ir~i 128 (480)
T KOG2563|consen 66 PINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-G---------------LRTALLLGTVLNGIGAWIRLI 128 (480)
T ss_pred hHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-c---------------hHHHHHHHHHHHHHHHHHhhh
Confidence 34567777788 777788899999999999999999999998 9 999999999999999887776
Q ss_pred hcccCCCCCCCCCCCCCccCCCchh--HHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHH
Q 041588 142 SGSLDSLRPPACKERPCVEVNGGQN--GFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINM 219 (540)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~i 219 (540)
+. .|.+. +.. .....+..+.+..+-.+....+-+.+-+|++++ |.++...-.+++-+
T Consensus 129 ss-~p~v~--------------~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~L 187 (480)
T KOG2563|consen 129 SS-LPFVP--------------PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPL 187 (480)
T ss_pred cc-Ccccc--------------ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchH
Confidence 53 23221 122 356677777777777666666666778898887 88888887777778
Q ss_pred HHHHHHHHHHhhhhc
Q 041588 220 GAIFGITVLVYIQEQ 234 (540)
Q Consensus 220 G~~i~p~v~~~l~~~ 234 (540)
|.+++.++.+.+..+
T Consensus 188 Gvavg~llppilV~~ 202 (480)
T KOG2563|consen 188 GVAVGFLLPPILVPS 202 (480)
T ss_pred HHHHHhhccceecCC
Confidence 887777776666543
No 209
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=98.55 E-value=3.8e-06 Score=85.27 Aligned_cols=152 Identities=16% Similarity=0.157 Sum_probs=107.8
Q ss_pred HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCC
Q 041588 69 REMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSL 148 (540)
Q Consensus 69 ~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~ 148 (540)
+++|++..+.+.+.....+...+..++.|.++||+ | |||.-++.++++.++.+.--.
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-G---------------rk~~cl~~cily~~scl~k~~------- 118 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-G---------------RKKACLLFCILYSLSCLTKHS------- 118 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C---------------chHHHHHHHHHHHHHHHHHhc-------
Confidence 57999999999999999999999999999999998 9 999999999988887754332
Q ss_pred CCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC-hHHHHhhhhhHHHHH-HHHHHHHHHHHH
Q 041588 149 RPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD-EKEAIQKYVFFNWFF-FAINMGAIFGIT 226 (540)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~-~~~~~~r~~~~~~~~-~~~~iG~~i~p~ 226 (540)
.+...++++|++.|+++....++.-+.......+++ +++ -.+.-|+... +.+.+-++.+..
T Consensus 119 ---------------~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~--~L~~tF~~~tf~~n~~vAI~aGv 181 (354)
T PF05631_consen 119 ---------------SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQE--WLSDTFSLATFFGNGVVAIGAGV 181 (354)
T ss_pred ---------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHhHHHHHHHhH
Confidence 357889999999999999888877776543322222 111 1333344333 233344455555
Q ss_pred HHHhhhhccCc--chhhhHhHHHHHHHHHHHHhcCc
Q 041588 227 VLVYIQEQKGW--SVGFGIPTAFTICSIIIVAAGFP 260 (540)
Q Consensus 227 v~~~l~~~~g~--~~~f~i~~~~~~~~~i~~~~~~~ 260 (540)
++-++++..|. ..+|..+.++.+++.++.....+
T Consensus 182 ~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ 217 (354)
T PF05631_consen 182 VANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWP 217 (354)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhccc
Confidence 66677776654 77888877777776666544333
No 210
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.55 E-value=3.8e-06 Score=88.60 Aligned_cols=182 Identities=11% Similarity=0.015 Sum_probs=130.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccc
Q 041588 41 ASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQG 120 (540)
Q Consensus 41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~ 120 (540)
.+...++..++...+.-....+...|+++.-|.+....+...++..+.=.+.-.+.+++-.|+ |
T Consensus 208 ~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g--------------- 271 (400)
T PF03825_consen 208 RFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-G--------------- 271 (400)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-C---------------
Confidence 344444555566666666668889998764447777777777776677777778889999997 9
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCCh
Q 041588 121 RFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADE 200 (540)
Q Consensus 121 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~ 200 (540)
.+++++++.+.+++=..+++.... |. .......+++..+.|+..|....+...++.+..|++.
T Consensus 272 ~~~ll~~a~~~~~vR~~l~a~~~~-~~---------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~- 334 (400)
T PF03825_consen 272 IKWLLLLALVAYAVRWLLYAYFSD-PW---------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL- 334 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-Cc---------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc-
Confidence 999999999888887777666521 00 0011223444567999999999999999999999988
Q ss_pred HHHHhhhhhHHHHHHH-HHHHHHHHHHHHHhhhhccCcc------hhhhHhHHHHHHHHHHHHhcCc
Q 041588 201 KEAIQKYVFFNWFFFA-INMGAIFGITVLVYIQEQKGWS------VGFGIPTAFTICSIIIVAAGFP 260 (540)
Q Consensus 201 ~~~~~r~~~~~~~~~~-~~iG~~i~p~v~~~l~~~~g~~------~~f~i~~~~~~~~~i~~~~~~~ 260 (540)
|.++-+++... ..+|+.+|..++|++.|++|-+ ..+.+++++.++..++++...|
T Consensus 335 -----~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk 396 (400)
T PF03825_consen 335 -----RATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFK 396 (400)
T ss_pred -----hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 88999987764 5799999999999999987644 3445555555555555555433
No 211
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=98.48 E-value=4.5e-06 Score=89.13 Aligned_cols=174 Identities=17% Similarity=0.111 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHhhHhcCCChhHH-HHHHHHH----HHHHHHHHHHHHHHhhhhcCCCcchhhhh
Q 041588 43 PFIIVNEVAERLAFFAIA---VNMTAYLVREMHQSLPTA-GTHVTDW----IGAAYVLTILGAFLADAYLGQPALKHVHA 114 (540)
Q Consensus 43 ~~i~~~~~~~~~~~y~~~---~~l~~yl~~~lg~s~~~a-~~~~~~~----~~~~~~~~~~gG~laD~~~G~~~~~~~~~ 114 (540)
+.+....+...++++... .+...+.....+.+.... +...... .....+..++-|.++||+ |
T Consensus 21 ~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-g--------- 90 (463)
T KOG2816|consen 21 RHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-G--------- 90 (463)
T ss_pred hHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-h---------
Confidence 445555666666666654 555556555444433322 2223333 456778899999999998 9
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHH--hcCCCccchhhhhh
Q 041588 115 IFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIAL--GTRDIKPCVSSFGA 192 (540)
Q Consensus 115 ~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~g~~~~~~~~~~~ 192 (540)
||..+.+..+...+..+.+.+.. +++++ +.++ +.+...+...++++
T Consensus 91 ------rk~~L~~~~~~~~l~~~~~~~~~-----------------------~~~~~---~~~l~g~~~~~~s~~~a~va 138 (463)
T KOG2816|consen 91 ------RKVVLLLPLFGTILPALCLLFQG-----------------------YWFFL---LLGLSGGFSAIFSVGFAYVA 138 (463)
T ss_pred ------hhhhHHHHHHHHHHhHHHHHHHH-----------------------HHHhh---hcccccchhhhhhhhhhhee
Confidence 99999999988888877777651 22222 3332 33345567778888
Q ss_pred ccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCccccc
Q 041588 193 DQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRY 264 (540)
Q Consensus 193 d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~~ 264 (540)
|...+++ |...+++.+.+...+..++|.+++++.+..|.-..|.+.++..+++.+-.++..|+..+
T Consensus 139 dis~~~~------R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~ 204 (463)
T KOG2816|consen 139 DISSEEE------RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQ 204 (463)
T ss_pred eccchhH------HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccC
Confidence 8887765 89999999988899999999999999999999999999888888877776666665443
No 212
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.47 E-value=9.3e-06 Score=85.19 Aligned_cols=145 Identities=12% Similarity=-0.001 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHH
Q 041588 54 LAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYS 133 (540)
Q Consensus 54 ~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~ 133 (540)
..........+.|+.+.+|++..+.+........+..++.++++++.||. | ++....... ..
T Consensus 221 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~---------------~~~~~~~~~--~~ 282 (394)
T PRK11652 221 AGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-S---------------TLMWQSVIC--CL 282 (394)
T ss_pred HHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---------------HHHHHHHHH--HH
Confidence 33444445667788888999999888887777677777777777777776 5 443332222 22
Q ss_pred HHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHH
Q 041588 134 VGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWF 213 (540)
Q Consensus 134 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~ 213 (540)
++.+.+....... ..+...++.+..+.++|.+...|...+...|.+|+ + +++..+..
T Consensus 283 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~------~g~~~~~~ 339 (394)
T PRK11652 283 LAGLLMWIPGWFG----------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-L------AGTAGALL 339 (394)
T ss_pred HHHHHHHHHHHhc----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c------chHHHHHH
Confidence 2222211111000 01234556667788888888888888888888864 3 67888888
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCcch
Q 041588 214 FFAINMGAIFGITVLVYIQEQKGWSV 239 (540)
Q Consensus 214 ~~~~~iG~~i~p~v~~~l~~~~g~~~ 239 (540)
+...++|+.+++.+++++.+...+..
T Consensus 340 ~~~~~lg~~~~~~~~~~~~~~~~~~~ 365 (394)
T PRK11652 340 GGLQNIGSGLAALLSAMLPQTGQFSL 365 (394)
T ss_pred HHHHHHHHHHHHHHHHHccCCchHHH
Confidence 88889999999999998876544443
No 213
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.46 E-value=3e-09 Score=113.75 Aligned_cols=139 Identities=16% Similarity=0.208 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCC
Q 041588 77 TAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKER 156 (540)
Q Consensus 77 ~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 156 (540)
..++..+...++..++.+++|+++||+ | ||++++++.++..++.++..++..
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~-G---------------Rk~~~~~~~~~~~i~~~~~~~~~~------------ 98 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRY-G---------------RKPALIISALLMIIGSILIAFAPS------------ 98 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccccc-c---------------cccccccccccccccccccccccc------------
Confidence 467888999999999999999999998 9 999999999999999988887721
Q ss_pred CCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhc--
Q 041588 157 PCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQ-- 234 (540)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~-- 234 (540)
..+...+.++|++.|++.|+..+....+..|..|++. |+...++...+..+|.+++..+.-.+.+.
T Consensus 99 ------~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 166 (451)
T PF00083_consen 99 ------YNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSD 166 (451)
T ss_pred ------ccccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccc
Confidence 0146778899999999999999999999999999887 88888888888888888877665444332
Q ss_pred -cCcchhhhHhHHHHHHHHHHH
Q 041588 235 -KGWSVGFGIPTAFTICSIIIV 255 (540)
Q Consensus 235 -~g~~~~f~i~~~~~~~~~i~~ 255 (540)
.+||..+.++.+..++.++..
T Consensus 167 ~~~Wr~~~~~~~~~~l~~~~~~ 188 (451)
T PF00083_consen 167 NWGWRILLIFGAIPSLLVLLLR 188 (451)
T ss_pred cccccccccccccccccccccc
Confidence 359999988777665544443
No 214
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.42 E-value=3.5e-06 Score=88.05 Aligned_cols=177 Identities=12% Similarity=0.108 Sum_probs=135.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcC---CChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhh
Q 041588 39 WKASPFIIVNEVAERLAFFAIAVNMTAYLVREMH---QSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAI 115 (540)
Q Consensus 39 ~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg---~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~ 115 (540)
-|.+|.+.+........|+..-...+.|.+..++ .+....|.+.+.-...-.+.-.+..++-+|+ |
T Consensus 219 ~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g---------- 287 (412)
T PF01306_consen 219 MRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-G---------- 287 (412)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-C----------
Confidence 3677877776666667777777778888876443 3344566777777777778888889999998 9
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccC
Q 041588 116 FKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQY 195 (540)
Q Consensus 116 ~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~ 195 (540)
.|+.++++..++++=....+++ .+.+.+.+...+.++-.+..-.+.--++++.+
T Consensus 288 -----~k~~Lllag~i~~iRi~~~~~~---------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~f 341 (412)
T PF01306_consen 288 -----AKNLLLLAGVIMAIRIIGSGFA---------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHF 341 (412)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHT-----------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred -----hHhHHHHHHHHHHHHHHHHhhh---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999988887777776 24667778888999888887788888999999
Q ss_pred CCCChHHHHhhhhhHHH-HHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588 196 DEADEKEAIQKYVFFNW-FFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG 258 (540)
Q Consensus 196 ~~~~~~~~~~r~~~~~~-~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~ 258 (540)
|++- ..+.+.+ +..+..+|..+.+.++|++.|+.|++..|++.+.+.++..++-.+.
T Consensus 342 d~rl------sAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~ 399 (412)
T PF01306_consen 342 DKRL------SATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFT 399 (412)
T ss_dssp -GGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHhH------HHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheee
Confidence 9876 6677777 5678899999999999999999999988887666655555554443
No 215
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.39 E-value=1.9e-05 Score=83.54 Aligned_cols=164 Identities=16% Similarity=0.158 Sum_probs=129.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
|....+++..++...++....+.++.|.+..+|.+...+............++.++...+++|+ |
T Consensus 236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-g-------------- 300 (467)
T COG2211 236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-G-------------- 300 (467)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-c--------------
Confidence 5556666677788788877778888888888888888888888888888888899999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
+|+++.++.++.+++.+.+.+.. .++..++++..++.++|.+...+..+++++|..+-++
T Consensus 301 -kk~~~~~~~~~~~i~~~~~~f~~-------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge 360 (467)
T COG2211 301 -KKKLFLIGLLLLAVGYLLLYFTP-------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGE 360 (467)
T ss_pred -hHHHHHHHHHHHHHHHHHHHhhc-------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHH
Confidence 99999999999999999988873 1457778888889999999999999999999886543
Q ss_pred hHH-HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcc
Q 041588 200 EKE-AIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWS 238 (540)
Q Consensus 200 ~~~-~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~ 238 (540)
-+. .+.-|..++.+.+..=+|..++..+.|++.+..||.
T Consensus 361 ~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gyv 400 (467)
T COG2211 361 WKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGYV 400 (467)
T ss_pred HHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 221 112355677788888888888888888776655543
No 216
>PRK11462 putative transporter; Provisional
Probab=98.32 E-value=2.8e-05 Score=83.74 Aligned_cols=162 Identities=12% Similarity=0.076 Sum_probs=98.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
|....++...++...+.....+....|.+..+|. ....+.+...+.+...++.+++++++||+ |
T Consensus 228 k~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-g-------------- 291 (460)
T PRK11462 228 DQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-C-------------- 291 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------------
Confidence 3444444455555555554444444444444443 33344556667777888899999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
+|+++..+..+..+..+++.+.. . .+...+++..++.+++.+...+...++.+|..+.++
T Consensus 292 -kk~~~~~~~~~~~~~~~~~~~~~---~----------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e 351 (460)
T PRK11462 292 -KVTIFWWTNALLAVISLAMFFVP---M----------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGE 351 (460)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHhc---h----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhH
Confidence 88887765554444333332221 0 122233444555677777666777888888876432
Q ss_pred hHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHhhhhccCcc
Q 041588 200 EKEAIQK--YVFFNWFFFAINMGAIFGITVLVYIQEQKGWS 238 (540)
Q Consensus 200 ~~~~~~r--~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~ 238 (540)
- +..+| +..++...++..+|..+++.++|++.+..||.
T Consensus 352 ~-~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy~ 391 (460)
T PRK11462 352 W-CNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGYD 391 (460)
T ss_pred H-hcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 1 11113 34466677888999999999998887766664
No 217
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.28 E-value=1.6e-05 Score=86.05 Aligned_cols=183 Identities=13% Similarity=0.051 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhH----HHHHHHHHHHHHHHHHHHHH----HHhhhhcCCCcchhhhhhh
Q 041588 45 IIVNEVAERLAFFAIAVNMTAYLVREMHQSLPT----AGTHVTDWIGAAYVLTILGA----FLADAYLGQPALKHVHAIF 116 (540)
Q Consensus 45 i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~----a~~~~~~~~~~~~~~~~~gG----~laD~~~G~~~~~~~~~~~ 116 (540)
+++...+....|.-..+.++.|..+..+.+... .+.+.+.-.+...+..++-. ++.||-.+
T Consensus 277 l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~----------- 345 (475)
T TIGR00924 277 LFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKD----------- 345 (475)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCC-----------
Confidence 344444445555555666788877665543222 34444444444444444433 34443112
Q ss_pred hcccchHH--HHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhcc
Q 041588 117 KLQGRFRT--LVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQ 194 (540)
Q Consensus 117 ~~~~r~~~--i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~ 194 (540)
.+.. +.+|.++..++++.+++....-. +....+.+.+.+..++.++|.....|...++..+.
T Consensus 346 ----~~~~~k~~~G~~l~~~~~~~~~~~~~~~~------------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~ 409 (475)
T TIGR00924 346 ----PTTPLKFTLGMLFCGASFLTFAASIWFAD------------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKI 409 (475)
T ss_pred ----CCcHHHHHHHHHHHHHHHHHHHHHHhhcC------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 2232 36777788888777765411000 01124677888899999999999999999999999
Q ss_pred CCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588 195 YDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFP 260 (540)
Q Consensus 195 ~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~ 260 (540)
.|++. |++.+++++.+..+|..+++.+.....+..||...|...++..++..++++...|
T Consensus 410 aP~~~------~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 410 APQRL------MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred CCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99887 9999999999999999999998888777778888887777766666666555444
No 218
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.27 E-value=0.00012 Score=74.44 Aligned_cols=86 Identities=9% Similarity=-0.093 Sum_probs=69.7
Q ss_pred chhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhc---------
Q 041588 164 GQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQ--------- 234 (540)
Q Consensus 164 ~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~--------- 234 (540)
.+...++++.+++|.|.+..+++.++++++..++++ +.+..++...+..+|+.++|.+++.+...
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~ 81 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV 81 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence 467889999999999999999999999999998876 77889999999999999999999977632
Q ss_pred -------cCcchhhhHhHHHHHHHHHHH
Q 041588 235 -------KGWSVGFGIPTAFTICSIIIV 255 (540)
Q Consensus 235 -------~g~~~~f~i~~~~~~~~~i~~ 255 (540)
.+|+++|++.+++.++..+++
T Consensus 82 ~~~~~~~~~~~~~yl~ia~~~~~~~i~~ 109 (310)
T TIGR01272 82 ATANAEAAKVHTPYLLLAGALAVLAIIF 109 (310)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358888875555444433333
No 219
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.27 E-value=1.4e-05 Score=88.21 Aligned_cols=202 Identities=13% Similarity=0.148 Sum_probs=144.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+.+..++....+......+......+-+.+.++++.++.|.+.+.+-+...+...+-.+.+-|. -
T Consensus 96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-H-------------- 160 (735)
T KOG3626|consen 96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-H-------------- 160 (735)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-C--------------
Confidence 4444444444444344445566666778889999999999999999999999999999999997 6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCC-------------CC-------------CCCCC--CCCc--cCCC-chhHH
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSL-------------RP-------------PACKE--RPCV--EVNG-GQNGF 168 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~-------------~~-------------~~~~~--~~~~--~~~~-~~~~~ 168 (540)
|-|.+-+|.+++.+|.++.++..++-.- .+ +.|.. .+|. +.++ .-...
T Consensus 161 -rPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 239 (735)
T KOG3626|consen 161 -RPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLL 239 (735)
T ss_pred -ccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHH
Confidence 7788889999999999998875322100 01 11111 1121 1222 23447
Q ss_pred HHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh---------------
Q 041588 169 LLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQE--------------- 233 (540)
Q Consensus 169 ~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~--------------- 233 (540)
++++.++.|+|...+.+.-.+++=|...+++ ....+++++....+|.++|.++++++..
T Consensus 240 ff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~ 313 (735)
T KOG3626|consen 240 FFLGQLLLGIGATPIFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPT 313 (735)
T ss_pred HHHHHHHhhcCCCCCccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCC
Confidence 7888899999998888877777766655554 6778899999999999999999987632
Q ss_pred ---ccC-cchhhhHhHHHHHHHHHHHHhcCcccc
Q 041588 234 ---QKG-WSVGFGIPTAFTICSIIIVAAGFPYYR 263 (540)
Q Consensus 234 ---~~g-~~~~f~i~~~~~~~~~i~~~~~~~~~~ 263 (540)
..| |+.+|++++.+.+++.+.++++.++..
T Consensus 314 DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp 347 (735)
T KOG3626|consen 314 DPRWIGAWWLGFLICGALLLFSAVPLFFFPKELP 347 (735)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCc
Confidence 134 999999999988888887777665544
No 220
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.24 E-value=4e-05 Score=79.11 Aligned_cols=172 Identities=18% Similarity=0.224 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHH
Q 041588 45 IIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRT 124 (540)
Q Consensus 45 i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~ 124 (540)
.+..-+...+++++=-..|-.|--+.+|++..+...+...+.++..++-.+.|++..|-.+ ++++
T Consensus 213 f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~---------------~~~~ 277 (403)
T PF03209_consen 213 FFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLG---------------KKRT 277 (403)
T ss_pred HHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---------------chHH
Confidence 3333455566666556667788888999999999999999999999999999999886668 8899
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHH
Q 041588 125 LVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAI 204 (540)
Q Consensus 125 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~ 204 (540)
..+++.+.++++.++.+++.. .+.+.+-.+.+++|+|.|.+.....+..-|+..++.
T Consensus 278 a~~G~~~~~~~f~lii~a~~~------------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~----- 334 (403)
T PF03209_consen 278 AALGCLLGALAFALIILAGPL------------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR----- 334 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhc------------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc-----
Confidence 999999999988888877532 346788899999999999988877777888887765
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhc----------cCcchhhhHhHHHHHHHHHHH
Q 041588 205 QKYVFFNWFFFAINMGAIFGITVLVYIQEQ----------KGWSVGFGIPTAFTICSIIIV 255 (540)
Q Consensus 205 ~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~----------~g~~~~f~i~~~~~~~~~i~~ 255 (540)
.+.+++.+..+..+...++..++|.+.|. .+|..+|.+-++..++++++.
T Consensus 335 -aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 335 -AGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 78899999888888888888888876542 246667776666666665554
No 221
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.23 E-value=7e-05 Score=73.40 Aligned_cols=138 Identities=14% Similarity=0.021 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHH
Q 041588 55 AFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSV 134 (540)
Q Consensus 55 ~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~ 134 (540)
+-|....+ ..-+++.+|+|+++...+...-..+.+++ ++.|.+.|++ | .+.++++|.+...+
T Consensus 17 t~Y~Fs~y-S~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-g---------------p~~~l~iG~~~~~~ 78 (250)
T PF06813_consen 17 TTYTFSAY-SPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-G---------------PWVVLLIGAVLGFV 78 (250)
T ss_pred cccchhhh-hHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-c---------------hHHHHHHHHHHHHH
Confidence 33444333 45578899999999999999998888875 7889999998 9 99999999999999
Q ss_pred HHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHH
Q 041588 135 GMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFF 214 (540)
Q Consensus 135 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~ 214 (540)
|+..+.+...-.. .....+.+.+...+.+.+.+....+...-..+.||+ + ||++.++.-
T Consensus 79 GY~~~~l~~~~~i--------------~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------RG~vvgilk 137 (250)
T PF06813_consen 79 GYGLLWLAVSGRI--------------PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------RGTVVGILK 137 (250)
T ss_pred HHHHHHHHHhCcc--------------CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------cCceehhhh
Confidence 9998887642111 112344554444455555444444444445689986 4 899888876
Q ss_pred HHHHHHHHHHHHHHHhh
Q 041588 215 FAINMGAIFGITVLVYI 231 (540)
Q Consensus 215 ~~~~iG~~i~p~v~~~l 231 (540)
....+++.+-..+...+
T Consensus 138 ~~~GLSaai~t~i~~~~ 154 (250)
T PF06813_consen 138 GFFGLSAAIFTQIYSAF 154 (250)
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 66666666544443333
No 222
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.23 E-value=4.9e-06 Score=89.52 Aligned_cols=164 Identities=15% Similarity=0.103 Sum_probs=106.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh---cCCCcchhhhhhh
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAY---LGQPALKHVHAIF 116 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~---~G~~~~~~~~~~~ 116 (540)
..+|...+..++.....|++..|+|.|+++..|+|..+++.+...+.++..++.++.|+++||. ..
T Consensus 273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~----------- 341 (495)
T KOG2533|consen 273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFA----------- 341 (495)
T ss_pred hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHH-----------
Confidence 4568899999999999999999999999986789999999999999999999999999999994 25
Q ss_pred hcccchHHHHHHHHHHHH-HHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccC
Q 041588 117 KLQGRFRTLVVFSCIYSV-GMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQY 195 (540)
Q Consensus 117 ~~~~r~~~i~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~ 195 (540)
+|.....+..++.+ |.+.+..... ......+.+....+.+...++......+..
T Consensus 342 ----~~~~~~~~~~~~~~~g~~~l~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~ 396 (495)
T KOG2533|consen 342 ----RRLLFIVFLCLYAIIGAISLLAAAV---------------------LPGAYGAFLIGPYGLIATAIIALSWTSANL 396 (495)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhhcc---------------------chHHhHHHHhcchhhHHHHHHHHhhccccc
Confidence 66666665554433 4444443311 112222222222223333344444444555
Q ss_pred CCCChHHHHhhhhhHHHHHHHHHHHHHHHHH-HHHhhhhccCcchhhhHh
Q 041588 196 DEADEKEAIQKYVFFNWFFFAINMGAIFGIT-VLVYIQEQKGWSVGFGIP 244 (540)
Q Consensus 196 ~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~-v~~~l~~~~g~~~~f~i~ 244 (540)
.++. ++-+..+.+..+.+.++.++|. ..+.....++|...|...
T Consensus 397 ~g~~-----k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~ 441 (495)
T KOG2533|consen 397 AGNT-----KALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYML 441 (495)
T ss_pred cchH-----HhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHH
Confidence 4433 2555555555555555555444 345555567888888543
No 223
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.22 E-value=3.4e-05 Score=79.10 Aligned_cols=154 Identities=16% Similarity=0.071 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccch
Q 041588 43 PFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRF 122 (540)
Q Consensus 43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~ 122 (540)
+.-.+..|+---+=-.+.++++.|+.+..|++..++...++.+.++..++..+|-++-.|+ - ..
T Consensus 239 ~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~---------------~~ 302 (422)
T COG0738 239 RLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-K---------------PE 302 (422)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C---------------HH
Confidence 3333344443333334568999999998999999999999999999999999999998887 7 77
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHH
Q 041588 123 RTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKE 202 (540)
Q Consensus 123 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~ 202 (540)
|.+.....+..+-.+...+.. + ..-+.++.++|+..+...|...+...+..|++.+
T Consensus 303 k~Laf~a~~~ill~~~~~l~~---------------------g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts-- 358 (422)
T COG0738 303 KYLAFYALIAILLLLAVALIG---------------------G-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTS-- 358 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHhc---------------------C-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc--
Confidence 877777655554444444442 1 2344566788889999999999999999985442
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhh
Q 041588 203 AIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFG 242 (540)
Q Consensus 203 ~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~ 242 (540)
.++ -.-....+|+.+.|.+.|++.|+.|-...+.
T Consensus 359 ---~~s---~~l~maivGGAiiP~l~G~i~d~~g~~~~~~ 392 (422)
T COG0738 359 ---VGS---GLLVMAIVGGAIIPPLQGVIADMFGIQLTFL 392 (422)
T ss_pred ---ccc---eeeeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence 222 2233556899999999999999998777665
No 224
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.22 E-value=6e-05 Score=79.92 Aligned_cols=168 Identities=14% Similarity=0.025 Sum_probs=106.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
|.++...+..++....++....++|.|+.+.+|++..+.+.......++..++..+.+.+.++. +
T Consensus 218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~-------------- 282 (413)
T PRK15403 218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-T-------------- 282 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-C--------------
Confidence 5667776767777777888888889999999999999999887767777777666666655443 3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
++|.+.....+..++.+++....... .......+++..+.++|.+...|+..+..- .+.+.
T Consensus 283 -~~~~~~~~~~~~~ig~~l~~~~~~~~----------------~~~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~ 343 (413)
T PRK15403 283 -EPRFIWRAVPIQLVGLALLIVGNLLW----------------PHVWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNL 343 (413)
T ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHc----------------cccHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCC
Confidence 44444433334444444443321000 012333466777788888887777764332 22222
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHH
Q 041588 200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAF 247 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~ 247 (540)
+ +++..+.++.....+...++.+.+++.++ +-.+.|....++
T Consensus 344 ~-----~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~ 385 (413)
T PRK15403 344 P-----KGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVV 385 (413)
T ss_pred C-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHH
Confidence 1 56666777777777777888888888765 445566544443
No 225
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=98.16 E-value=3e-07 Score=100.36 Aligned_cols=193 Identities=12% Similarity=0.129 Sum_probs=2.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHH
Q 041588 48 NEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVV 127 (540)
Q Consensus 48 ~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~ 127 (540)
..+.. ...++.......-+.+.++++.+++|++.+.+-++..+..++..++.+|. - |-|.+-+
T Consensus 11 ~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-h---------------rprwig~ 73 (539)
T PF03137_consen 11 LGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-H---------------RPRWIGI 73 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C---------------Ccceeee
Confidence 33344 55555555555667889999999999999999999999999999999986 6 7788888
Q ss_pred HHHHHHHHHHHHHHhcccCCCC-CCC-----CCC----CCC---------------cc----CCCchhHHHHHHHHHHHH
Q 041588 128 FSCIYSVGMVLLTVSGSLDSLR-PPA-----CKE----RPC---------------VE----VNGGQNGFLLCALGLIAL 178 (540)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~~~-~~~-----~~~----~~~---------------~~----~~~~~~~~~~~~~~l~~~ 178 (540)
|.+++.+|.+++++..++.... +.+ |.. ..| .. ........++++.++.|+
T Consensus 74 g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~Gi 153 (539)
T PF03137_consen 74 GALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGI 153 (539)
T ss_dssp ------------------------------------------------------------------------------SS
T ss_pred cHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhc
Confidence 9899999999998865432111 000 000 012 11 112235677888899999
Q ss_pred hcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh---------------------ccC-
Q 041588 179 GTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQE---------------------QKG- 236 (540)
Q Consensus 179 g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~---------------------~~g- 236 (540)
|.....+.-.+++=|..++++ -...+++++.+..+|.++|.++++.+.. ..|
T Consensus 154 G~~pl~tLG~tYiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGA 227 (539)
T PF03137_consen 154 GATPLYTLGITYIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGA 227 (539)
T ss_dssp S-------------------------------------------------------------------------------
T ss_pred cccCCccceeeeecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHH
Confidence 998888888888877776665 6778899999999999999888876431 134
Q ss_pred cchhhhHhHHHHHHHHHHHHhcCcccc
Q 041588 237 WSVGFGIPTAFTICSIIIVAAGFPYYR 263 (540)
Q Consensus 237 ~~~~f~i~~~~~~~~~i~~~~~~~~~~ 263 (540)
|+.+|.+.+++.++..+.++.+.|+..
T Consensus 228 WWLGfli~g~~~~l~aipl~~FPk~lp 254 (539)
T PF03137_consen 228 WWLGFLICGILLFLSAIPLFFFPKKLP 254 (539)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence 999998888877777666665555443
No 226
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.05 E-value=0.00032 Score=78.33 Aligned_cols=289 Identities=12% Similarity=-0.065 Sum_probs=198.0
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 041588 71 MHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRP 150 (540)
Q Consensus 71 lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (540)
.+...-.......++....+++++.+...+|-.-| +...+....+..+++.+.+.+.+. ...
T Consensus 15 ~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~---------------~lG~~~tIl~~~ii~~lG~~llai-~a~-- 76 (654)
T TIGR00926 15 LNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADG---------------WLGKFKTILYLSIVYVVGHALLSF-GAI-- 76 (654)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HhhhHHHHHHHHHHHHHHHHHHHh-ccC--
Confidence 33444456778889999999999999999999988 889999998888888888877642 110
Q ss_pred CCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 041588 151 PACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVY 230 (540)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~ 230 (540)
+.........+.++.++++.++..++.+.+.+++.+..+ ..++....++|++..+.+.+. .+++..
T Consensus 77 ----------~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~---~~~~~~~~s~F~~fY~~iNiG-Slis~~ 142 (654)
T TIGR00926 77 ----------PSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE---ERQLSLRSRFFSFFYFAINAG-SLISTI 142 (654)
T ss_pred ----------cccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcC---ccchhHHHHHHHHHHHHHHHH-HHHHHH
Confidence 112223445567777889999999999999999997765 244567999999999988764 556666
Q ss_pred hhhccC-cch-------hhhHhHHHHHHHHHHHHhcCccccccCCCCChHHHHHHHHHHHHHhhccCccccCccchhhhc
Q 041588 231 IQEQKG-WSV-------GFGIPTAFTICSIIIVAAGFPYYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDDLYEVT 302 (540)
Q Consensus 231 l~~~~g-~~~-------~f~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 302 (540)
+..... +.. .++..++.+++.++.++.+...++..++.+.+...+.++++......+.+
T Consensus 143 i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~------------- 209 (654)
T TIGR00926 143 ITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKR------------- 209 (654)
T ss_pred HHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHh-------------
Confidence 655443 332 22244555566666667776666655555443333444433332211100
Q ss_pred cccccccccccccCCCchhhhhhhhhccCcccccccccccc--cchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 041588 303 TKESDIFGARKLSHSSQFRFLDKAAVITDPETVRKDRWRLC--TLTQVEELKSFIRILPIWASTLDLAISFAQLSTFFLS 380 (540)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~--~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~s~~~~ 380 (540)
..+ .+.. .+..|-.+ ....+++++...+++.++...+.+++.+.|.......
T Consensus 210 -----------~~~------~~~~---------~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~ 263 (654)
T TIGR00926 210 -----------FST------RSEH---------WPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSR 263 (654)
T ss_pred -----------hcc------CCcc---------cchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Confidence 000 0000 00122211 2333467889999999999999999999998888899
Q ss_pred HHHhhccCCCCCceecCCCccchhHHHHHHHHHhhhhhHHhHhhhhcCCCC
Q 041588 381 QAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKLTGQTQ 431 (540)
Q Consensus 381 q~~~~~~~~~~g~~i~~~~~~~~n~i~iii~~p~~~~~~~p~~~r~~~~~~ 431 (540)
+..++++..+ .+...+...+.++++..++.+++...+.+|+.++..+...
T Consensus 264 ~~~qa~~m~~-~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~ 313 (654)
T TIGR00926 264 WTLQATRMDG-DVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGT 313 (654)
T ss_pred HHHHHHHhcC-ccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCC
Confidence 9889988755 4444556688999999999999999998899999865556
No 227
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.01 E-value=0.00012 Score=78.66 Aligned_cols=208 Identities=10% Similarity=-0.001 Sum_probs=136.7
Q ss_pred cccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhH-hcCCChh------HH---HH-HHHHHHHHHHHHHHHHHHHhh
Q 041588 33 KRTTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVR-EMHQSLP------TA---GT-HVTDWIGAAYVLTILGAFLAD 101 (540)
Q Consensus 33 ~~~~~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~-~lg~s~~------~a---~~-~~~~~~~~~~~~~~~gG~laD 101 (540)
+..+.-+|.++.+++++++.-++++.+..+.+.|..+ .+|-++. ++ |. ....+.....+..++--++.+
T Consensus 251 ~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~ 330 (477)
T TIGR01301 251 GAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCR 330 (477)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999999999999999888888875 3443221 11 22 222223333344555566788
Q ss_pred hhcCCCcchhhhhhhhcccch-HHHHHHHHHHHHHHHHHHHhcccCC-CCCCCCCCCCCccCCCchhHHHHHHHHHHHHh
Q 041588 102 AYLGQPALKHVHAIFKLQGRF-RTLVVFSCIYSVGMVLLTVSGSLDS-LRPPACKERPCVEVNGGQNGFLLCALGLIALG 179 (540)
Q Consensus 102 ~~~G~~~~~~~~~~~~~~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 179 (540)
++ | +| ++..++.++..+++....+..+... .++.+ ++..--+++.......++...++|+.
T Consensus 331 ~~-g---------------~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~Gi~ 393 (477)
T TIGR01301 331 GW-G---------------AGKRLWGIVNIILAICLAATVLVTYVAKNSRYYD-GDGESLPPPTGIKASALIVFAILGIP 393 (477)
T ss_pred Hh-c---------------cchhHHHHHHHHHHHHHHHHHHHHhhhhcccccc-ccccccCcchhhHHHHHHHHHHhhHH
Confidence 76 7 74 5557777777777777765432110 00000 00000011112235566677789999
Q ss_pred cCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC--cchhhhHhHHHHHHHHHHHHh
Q 041588 180 TRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG--WSVGFGIPTAFTICSIIIVAA 257 (540)
Q Consensus 180 ~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g--~~~~f~i~~~~~~~~~i~~~~ 257 (540)
++.......+++++..++++. +.|..++++|.++.+.-++..+..|.+.+..| -...+.+.++.++++.+..+.
T Consensus 394 ~A~~~siPfal~s~~~~~~~~----~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~ 469 (477)
T TIGR01301 394 LAITYSIPFALASIRSSNLGA----GQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALI 469 (477)
T ss_pred HHHHHHHhHHHHHHHccccCC----CCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHH
Confidence 999999999999998885432 26889999999999999988887777655544 566777788888888777766
Q ss_pred cCcc
Q 041588 258 GFPY 261 (540)
Q Consensus 258 ~~~~ 261 (540)
..|+
T Consensus 470 ~~~~ 473 (477)
T TIGR01301 470 LLPR 473 (477)
T ss_pred hCCC
Confidence 6664
No 228
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=97.99 E-value=0.00031 Score=68.82 Aligned_cols=153 Identities=18% Similarity=0.257 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHhhHhcCCCh--hHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHH
Q 041588 54 LAFFAIAVNMTAYLVREMHQSL--PTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCI 131 (540)
Q Consensus 54 ~~~y~~~~~l~~yl~~~lg~s~--~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~ 131 (540)
.........++.+.. +++.+. ...+.....+.....++.++.|.++||+ | ||+.+..+...
T Consensus 16 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g---------------~~~~~~~~~~~ 78 (338)
T COG0477 16 LDLGLLSPALPLLLS-TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-G---------------RRKVLIIGLLL 78 (338)
T ss_pred HhcchHHHHHHHHHH-HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-c---------------chHHHHHHHHH
Confidence 333333344455444 444444 4678888888888888889999999998 9 99888888776
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHH
Q 041588 132 YSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFN 211 (540)
Q Consensus 132 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~ 211 (540)
..++.+...+... .....+++.+.+.+++.+...+...++..|.+|+ . .+|+...+
T Consensus 79 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~ 134 (338)
T COG0477 79 FLLGTLLLALAPN-------------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPE-A----TERGLAVG 134 (338)
T ss_pred HHHHHHHHHhCcc-------------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h----hHHHHHHH
Confidence 5555455544421 2356677777778899888889999999999987 1 12777888
Q ss_pred HHHH-HHHHHHHHHHHHHHhhhhc--cCcchhhhHhHHH
Q 041588 212 WFFF-AINMGAIFGITVLVYIQEQ--KGWSVGFGIPTAF 247 (540)
Q Consensus 212 ~~~~-~~~iG~~i~p~v~~~l~~~--~g~~~~f~i~~~~ 247 (540)
.... ...+|..++|.+++.+... .+|+..|.+....
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (338)
T COG0477 135 LVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALL 173 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 8777 5778888888777766554 5688755544333
No 229
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=97.97 E-value=5.5e-08 Score=103.99 Aligned_cols=188 Identities=12% Similarity=0.037 Sum_probs=113.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccc
Q 041588 41 ASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQG 120 (540)
Q Consensus 41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~ 120 (540)
.....+....+..+..+....+...++.+..+.+.. ........+...++.+++.++.||+ |
T Consensus 253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-G--------------- 314 (451)
T PF00083_consen 253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-G--------------- 314 (451)
T ss_pred cccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-c---------------
Confidence 334444444444444433334444455556676666 2222333455667777888999998 9
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcC-CCccchhhhhhccCCCCC
Q 041588 121 RFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTR-DIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 121 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g-~~~~~~~~~~~d~~~~~~ 199 (540)
||++++.+..+.+++.+.++... ...... +...+.. .+....+...+.+ +..+....+.+|.||.+.
T Consensus 315 Rr~~~i~~~~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~-~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~ 382 (451)
T PF00083_consen 315 RRKLLIIGLLLMAICSLILGIIF-FLGVSS----------SSWWSIL-SIVFLALFFAFFSLGWGPLPWIYTAELFPTKV 382 (451)
T ss_pred ccccccccccccccccccccccc-cccccc----------ccccccc-cceeeeeccccccccccccccccccccccccc
Confidence 99999999988887777665111 010000 0000111 1112222222222 344666788899999998
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCccccc
Q 041588 200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRY 264 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~~ 264 (540)
|.++.++.+....+++++++.+..++.+..+-...|.+.+++.+++.++..+..|+.+.
T Consensus 383 ------R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g 441 (451)
T PF00083_consen 383 ------RSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKG 441 (451)
T ss_pred ------cccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCC
Confidence 99999998888899999999888888877763445555566656666665566666543
No 230
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=97.92 E-value=0.00014 Score=78.94 Aligned_cols=179 Identities=12% Similarity=0.062 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhcCCChh----HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchH-
Q 041588 49 EVAERLAFFAIAVNMTAYLVREMHQSLP----TAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFR- 123 (540)
Q Consensus 49 ~~~~~~~~y~~~~~l~~yl~~~lg~s~~----~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~- 123 (540)
..+....+......++.|..+..+.+.. .+..+.+...+...+..++.|++.||+ | +|+
T Consensus 278 ~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~---------------~r~~ 341 (489)
T PRK10207 278 AVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-G---------------SKGK 341 (489)
T ss_pred HHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-h---------------hCCC
Confidence 3334444555556777887653332211 122333333344556677778999998 8 776
Q ss_pred ------HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588 124 ------TLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE 197 (540)
Q Consensus 124 ------~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~ 197 (540)
-+.+|.++..++++.++........ .....+.+.+....++.++|.++..|...++..+..|+
T Consensus 342 ~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~-----------~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~ 410 (489)
T PRK10207 342 DLSMPMKFTLGMFLCSLGFLTAAAAGMWFAD-----------AQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQ 410 (489)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhhcC-----------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChH
Confidence 3667777777777655432110000 00112456667778899999999999999999999998
Q ss_pred CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh----------ccCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588 198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQE----------QKGWSVGFGIPTAFTICSIIIVAAGFP 260 (540)
Q Consensus 198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~----------~~g~~~~f~i~~~~~~~~~i~~~~~~~ 260 (540)
+. ++.+.+.++...++|+.++..++.+... ...+.+.|...++..+++.++++...|
T Consensus 411 ~~------~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~ 477 (489)
T PRK10207 411 HL------MGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVP 477 (489)
T ss_pred HH------HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 8999999999999999998877765521 112455665555555544444444344
No 231
>PF12832 MFS_1_like: MFS_1 like family
Probab=97.91 E-value=0.00012 Score=58.19 Aligned_cols=68 Identities=18% Similarity=0.107 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHH
Q 041588 47 VNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLV 126 (540)
Q Consensus 47 ~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~ 126 (540)
...++...+...+.++++.|+. +.|++..+.|.+.++......+++++.|+++||+ | |+|.++
T Consensus 7 ~~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~---------------~~~~~l 69 (77)
T PF12832_consen 7 AFYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-G---------------KRKVIL 69 (77)
T ss_pred HHHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C---------------ccHHHH
Confidence 3445555666667899999998 4999999999999999999999999999999998 8 888887
Q ss_pred HHHHH
Q 041588 127 VFSCI 131 (540)
Q Consensus 127 ~~~~~ 131 (540)
.+..+
T Consensus 70 ~~~~~ 74 (77)
T PF12832_consen 70 LGSLF 74 (77)
T ss_pred HHHHH
Confidence 76644
No 232
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=97.87 E-value=0.00028 Score=76.85 Aligned_cols=179 Identities=12% Similarity=0.018 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhH--hcCCChh------HHHHHHHHHHHHHHHHHHHHH----HHhhhhcCCCcchhhhhh
Q 041588 48 NEVAERLAFFAIAVNMTAYLVR--EMHQSLP------TAGTHVTDWIGAAYVLTILGA----FLADAYLGQPALKHVHAI 115 (540)
Q Consensus 48 ~~~~~~~~~y~~~~~l~~yl~~--~lg~s~~------~a~~~~~~~~~~~~~~~~~gG----~laD~~~G~~~~~~~~~~ 115 (540)
..++....||.+...++.++.. ..+.+.. ..+.+.+.-.+...++.++.+ ++.||+ +
T Consensus 280 ~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~---------- 348 (500)
T PRK09584 280 ILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-P---------- 348 (500)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-C----------
Confidence 3446667778777777777653 1111111 133344444444455555554 444443 4
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccC
Q 041588 116 FKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQY 195 (540)
Q Consensus 116 ~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~ 195 (540)
..+.+.+|.++..++++.+........ + ....+.+.+....+++++|.++..|...+++.+..
T Consensus 349 -----~~~~~~~G~~l~~l~f~~l~~~~~~~~----~--------~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~a 411 (500)
T PRK09584 349 -----MPHKFAIGMVLCSGAFLVLPLGAKFAN----D--------AGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLV 411 (500)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHHHHhcC----C--------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence 667788888999999888877632111 0 01124557788889999999999999999999999
Q ss_pred CCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh----------ccCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588 196 DEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQE----------QKGWSVGFGIPTAFTICSIIIVAAGFP 260 (540)
Q Consensus 196 ~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~----------~~g~~~~f~i~~~~~~~~~i~~~~~~~ 260 (540)
|++. |+..++.++++..+|+.++..+.+.... ..++...|...++..++..++++...+
T Consensus 412 P~~~------rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~ 480 (500)
T PRK09584 412 PQRL------MGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAP 480 (500)
T ss_pred cHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987 9999999988888888877666643221 113566776655555444444444333
No 233
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=97.82 E-value=5e-05 Score=81.95 Aligned_cols=148 Identities=8% Similarity=-0.097 Sum_probs=109.9
Q ss_pred hHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCC
Q 041588 68 VREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDS 147 (540)
Q Consensus 68 ~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~ 147 (540)
.+.+|++..+.|.......++..++..+.+++.+|+ + .|+++.++.++..++.+...+...-..
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~---------------~r~~l~~~~~l~~~~~~~~~~l~~~~~ 343 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-P---------------YRLLFGVTTLLYTLSSLFDLILVKRWN 343 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-C---------------HHHHHHHHHHHHHHHHhCceeeeeccc
Confidence 457999999999999999888889999999998887 9 999999999888887755432211000
Q ss_pred CCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 041588 148 LRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITV 227 (540)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v 227 (540)
.. ..-.....++...++.+++.+........+..+..|++. +++.++++....|+|..+++.+
T Consensus 344 ~~-----------~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~ 406 (468)
T TIGR00788 344 LA-----------FGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFL 406 (468)
T ss_pred cc-----------cCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHH
Confidence 00 000112234444566777777777777888999999887 8999999999999999999999
Q ss_pred HHhhhhccC-----cchhhhHhHHHH
Q 041588 228 LVYIQEQKG-----WSVGFGIPTAFT 248 (540)
Q Consensus 228 ~~~l~~~~g-----~~~~f~i~~~~~ 248 (540)
++++.+..| ++..+....+..
T Consensus 407 gg~l~~~~g~~~~~~~~~~~~i~i~~ 432 (468)
T TIGR00788 407 GVLLMETIGITCDNSNNLWLLILGHS 432 (468)
T ss_pred HHHHHHHcCCCcccccchHHHHHHHH
Confidence 999998877 665555443333
No 234
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=97.65 E-value=3.9e-05 Score=79.74 Aligned_cols=181 Identities=12% Similarity=-0.001 Sum_probs=122.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHH--------HHHHHHHHHHH-HHHHHHHHhhhhcCCCcch
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGT--------HVTDWIGAAYV-LTILGAFLADAYLGQPALK 110 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~--------~~~~~~~~~~~-~~~~gG~laD~~~G~~~~~ 110 (540)
+.....++..|...+++|+...+...-+. .+|+.+.+... ...+.....++ +..++.++.|++ |
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-G----- 376 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-G----- 376 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-h-----
Confidence 55666778888889999988776655443 45554443322 11112222222 445566679998 9
Q ss_pred hhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhh
Q 041588 111 HVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSF 190 (540)
Q Consensus 111 ~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~ 190 (540)
||+..+.+.+++.+.++.++..-.. . . .....+..--+.+-++.-+..+..-..
T Consensus 377 ----------Rk~iq~~GF~~~~i~~~~~~~~y~~---~-----------~--~~~Gf~v~y~l~~ff~NFGPn~ttfiv 430 (538)
T KOG0252|consen 377 ----------RKYIQLMGFFIMTIFFFVIAGPYNQ---L-----------E--NTIGFVVLYSLTFFFGNFGPNATTFIV 430 (538)
T ss_pred ----------hHHHHHhhHHHHHHHHHHHcCCccc---c-----------c--ccCceeehHHHHHHHHhcCCCceeEEe
Confidence 9999999999988888877765210 0 1 112222222223334444444555555
Q ss_pred hhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh-----ccCcchhhhHhHHHHHHHHHHHHhcC
Q 041588 191 GADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQE-----QKGWSVGFGIPTAFTICSIIIVAAGF 259 (540)
Q Consensus 191 ~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~-----~~g~~~~f~i~~~~~~~~~i~~~~~~ 259 (540)
.+|.||.+. |++..++.-.++-.|++++.....++.+ ..|.+..|++.+.++.++.++.++..
T Consensus 431 paE~FParv------R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~p 498 (538)
T KOG0252|consen 431 PAEIFPARV------RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIP 498 (538)
T ss_pred ehhhchHHH------hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEee
Confidence 689999988 9999999999999999999999999998 77899999998888888877765543
No 235
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.036 Score=59.04 Aligned_cols=80 Identities=10% Similarity=0.062 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccC
Q 041588 82 VTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEV 161 (540)
Q Consensus 82 ~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 161 (540)
..+-.....+++++++.+-|.+ | .|..+.+++..+..-.+.+...
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i-~---------------~K~~lv~ga~~y~~f~~gfl~~------------------- 100 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFL-G---------------PKWALVIGATCYAAFPLGFLFP------------------- 100 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHh-h---------------HHHHHHHHhHHHHHHHHHHHhc-------------------
Confidence 5555667778899999999997 9 9999999998777765555443
Q ss_pred CCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 162 NGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 162 ~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
+...++.+-+++|+|.+..+.....+.++...++.
T Consensus 101 ---N~y~~yfssallG~Gaallw~GqG~ylt~~st~~t 135 (461)
T KOG3098|consen 101 ---NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRET 135 (461)
T ss_pred ---chHHHHHHHHHhhhhHHheecccceehhhcCChhh
Confidence 35678889999999999999888888888776654
No 236
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.59 E-value=0.0012 Score=74.01 Aligned_cols=85 Identities=18% Similarity=0.204 Sum_probs=67.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHH-HHHHHHHHHHHHhhhhcCCCcchhhhhhhhc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIG-AAYVLTILGAFLADAYLGQPALKHVHAIFKL 118 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~-~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~ 118 (540)
+.++...+..++...+++++.+++|.|+.+.+|++..+++.+.+...+ +..++.+++|+++||+ +
T Consensus 330 ~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~-~------------- 395 (633)
T TIGR00805 330 PIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKF-K------------- 395 (633)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeee-c-------------
Confidence 567888889999999999999999999999999999999999887665 5678999999999997 6
Q ss_pred ccchHHHHHHHHHHHHHHHH
Q 041588 119 QGRFRTLVVFSCIYSVGMVL 138 (540)
Q Consensus 119 ~~r~~~i~~~~~~~~~~~~~ 138 (540)
...|+.+..+.++.+++.++
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 396 LNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred ccHHHHHHHHHHHHHHHHHH
Confidence 00235555565555555433
No 237
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=97.58 E-value=0.0073 Score=64.39 Aligned_cols=49 Identities=20% Similarity=0.246 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 041588 55 AFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYL 104 (540)
Q Consensus 55 ~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~ 104 (540)
.+-.+.+.++.|.. ++|++..+.|.+++.--++..+..|+.|++|||+-
T Consensus 26 ~~g~l~pll~vy~k-QLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r 74 (618)
T KOG3762|consen 26 RFGSLFPLLAVYFK-QLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYR 74 (618)
T ss_pred cccccchHHHHHHH-HcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHH
Confidence 34446788899986 69999999999999999999999999999999993
No 238
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=8e-05 Score=76.16 Aligned_cols=181 Identities=12% Similarity=-0.025 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccch
Q 041588 43 PFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRF 122 (540)
Q Consensus 43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~ 122 (540)
+...+.-...+...-..-+-++++..+.+..+.-+.|+...-..+.+.+++.+.|.++||+ + .-
T Consensus 273 ~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~---------------~~ 336 (464)
T KOG3764|consen 273 LLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-P---------------HL 336 (464)
T ss_pred hhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-C---------------ch
Confidence 3344333333444444556778888888874444777777767778889999999999998 8 65
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHH
Q 041588 123 RTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKE 202 (540)
Q Consensus 123 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~ 202 (540)
+.+.....+..+|....... . .++...+++-...++++.+...+...+..+...+.+...+
T Consensus 337 ~wl~~~~gl~~~G~~~~~iP----~---------------~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~ 397 (464)
T KOG3764|consen 337 RWLLSLGGLATVGVSSGPIP----F---------------ATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSG 397 (464)
T ss_pred hHHHHHHHHHHHHHHhchhH----h---------------hhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccc
Confidence 55555544555553332221 1 1345566666667777777777666666666665543211
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588 203 AIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG 258 (540)
Q Consensus 203 ~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~ 258 (540)
-..-++.+++...+..+|..+||.++|.+.+..|++|.-.+.++..++..-++...
T Consensus 398 ~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll 453 (464)
T KOG3764|consen 398 FNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLL 453 (464)
T ss_pred cceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11246788889999999999999999999999999987766666655544444443
No 239
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=97.51 E-value=0.0025 Score=69.69 Aligned_cols=193 Identities=14% Similarity=0.047 Sum_probs=99.8
Q ss_pred cchHHHHHHHHHHHH-HHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhh
Q 041588 39 WKASPFIIVNEVAER-LAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFK 117 (540)
Q Consensus 39 ~~~~~~i~~~~~~~~-~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~ 117 (540)
+|.....+....+.. .++..+..+.+..+ +..|.+... .....+......++..+++++.||+ |
T Consensus 293 ~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if-~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-g------------ 357 (513)
T KOG0254|consen 293 RKRLIIGLLLQLFQQLTGINYVFYYSTTIF-KSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-G------------ 357 (513)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEeehHHHH-HhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-c------------
Confidence 344333333333333 33333444444443 455665443 4445555666777888889999998 9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588 118 LQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE 197 (540)
Q Consensus 118 ~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~ 197 (540)
||+.++.+...+.+++++++..........+ + ........+....+.+.....+..|..+.+.+|.||.
T Consensus 358 ---Rr~lll~s~~~m~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~ 426 (513)
T KOG0254|consen 358 ---RRKLLLFGAAGMSICLVILAVVGVFALYYPN------S--SKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPL 426 (513)
T ss_pred ---cHHHHHHhHHHHHHHHHHHHHHHHHhccCCC------c--ccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcH
Confidence 9999999999999999988876432211000 0 0001111222222223333333446666788999999
Q ss_pred CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHH-HHHhcCcccc
Q 041588 198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSII-IVAAGFPYYR 263 (540)
Q Consensus 198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i-~~~~~~~~~~ 263 (540)
+. |+.+.++-.....+...+-......+.+..++...|........++.+ .+.+..|+.+
T Consensus 427 ~~------r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETk 487 (513)
T KOG0254|consen 427 RL------RSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETK 487 (513)
T ss_pred hH------HhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCC
Confidence 87 666665533333222222222222222322233444444444444444 3444555543
No 240
>PTZ00207 hypothetical protein; Provisional
Probab=97.48 E-value=0.00097 Score=73.43 Aligned_cols=185 Identities=10% Similarity=0.025 Sum_probs=127.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhc-CCChhH--HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCc-chhhhhh
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREM-HQSLPT--AGTHVTDWIGAAYVLTILGAFLADAYLGQPA-LKHVHAI 115 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~l-g~s~~~--a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~-~~~~~~~ 115 (540)
..+|++++..++..-+--.+.-|+ -++-+.+ |.+.++ ...++++..+..+++.+.+|+++.-. -+.+ .+.+
T Consensus 353 ~d~Wll~~~~~cg~g~gl~~~~N~-~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~-~~~~~~~r~--- 427 (591)
T PTZ00207 353 ARLWCLLWSIFCCVGAHFVIIFNA-RFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWS-QKRRAEDRV--- 427 (591)
T ss_pred hhHHHHHHHHHHhhCchheeeecH-HHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHH-Hhhcccccc---
Confidence 467888888777766655555554 3344567 763322 22378889999999999999999433 3111 1112
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccC
Q 041588 116 FKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQY 195 (540)
Q Consensus 116 ~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~ 195 (540)
.|...+....++.++.+++.+.. | ...++++-+++|++.|...+...+..+|+|
T Consensus 428 -----prt~~l~~~~~~~~~~lll~~~~--p-------------------~~~L~~~~~lvg~~~G~~~~~~~~i~selF 481 (591)
T PTZ00207 428 -----PITIALFIPSVCIITMLTLFLTL--P-------------------KAALPLPYFIAAFANGFMAATIALVTRTIF 481 (591)
T ss_pred -----chhHHHHHHHHHHHHHHHHHHHC--C-------------------ccHhHHHHHHHHHHhhHhHHHHHHHHHHHh
Confidence 33333333334777777777661 1 146899999999999999999999999999
Q ss_pred CCCChHHHHhhhhhHHHHHHHHHHHHHHH-HHHHHhhhhc-------------cCcchhhhHhHHHHHHHHHHHHhcCcc
Q 041588 196 DEADEKEAIQKYVFFNWFFFAINMGAIFG-ITVLVYIQEQ-------------KGWSVGFGIPTAFTICSIIIVAAGFPY 261 (540)
Q Consensus 196 ~~~~~~~~~~r~~~~~~~~~~~~iG~~i~-p~v~~~l~~~-------------~g~~~~f~i~~~~~~~~~i~~~~~~~~ 261 (540)
. ++ -++-+|....++-+|+.+- -.+.|.+.|. .-++..|.+.++..+++.++-....-+
T Consensus 482 g-k~------~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R 554 (591)
T PTZ00207 482 A-KD------PAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQ 554 (591)
T ss_pred c-cc------hHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeee
Confidence 9 65 6888888888888888764 5566766542 138889988888888777775555444
Q ss_pred c
Q 041588 262 Y 262 (540)
Q Consensus 262 ~ 262 (540)
+
T Consensus 555 ~ 555 (591)
T PTZ00207 555 Y 555 (591)
T ss_pred h
Confidence 3
No 241
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=97.43 E-value=0.08 Score=56.25 Aligned_cols=197 Identities=8% Similarity=-0.107 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccc
Q 041588 41 ASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQG 120 (540)
Q Consensus 41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~ 120 (540)
..+.+....++.++.-=+...-.+.|+.+-+.-+.--++..-..-.+...++.+.-|...||. -
T Consensus 3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~--------------- 66 (432)
T PF06963_consen 3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-P--------------- 66 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-c---------------
Confidence 446667777777776666666677888765543333333333333445556666677778997 7
Q ss_pred chHHHHHHHHHHH----HHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHH-HHHHHHHhcCCCccchhhhhhccC
Q 041588 121 RFRTLVVFSCIYS----VGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLC-ALGLIALGTRDIKPCVSSFGADQY 195 (540)
Q Consensus 121 r~~~i~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~g~g~~~~~~~~~~~d~~ 195 (540)
|.|++..+.+..- ++..++......+... . .+......+++ ..++.++..=+......++--|+.
T Consensus 67 Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~--------~--~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWV 136 (432)
T PF06963_consen 67 RLKVIRTSLVVQNLSVAASCALFLLLLSYPSSS--------S--QSSWLFIALFALLILLGAIERLASIANTIAVERDWV 136 (432)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhCCccc--------c--ccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchh
Confidence 8887777665422 2222222211111100 0 00111122222 222222222122222233333443
Q ss_pred CCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHH-HHhcCcccc
Q 041588 196 DEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIII-VAAGFPYYR 263 (540)
Q Consensus 196 ~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~-~~~~~~~~~ 263 (540)
..=..+....+....+...=.=-+.-+++|++.|.+.+..|...+..+.++..+++.++ +++..+-|+
T Consensus 137 vvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~ 205 (432)
T PF06963_consen 137 VVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYN 205 (432)
T ss_pred hhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111111113333333333334456689999999988888888777777777777776 344444443
No 242
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=97.23 E-value=0.0013 Score=69.79 Aligned_cols=173 Identities=9% Similarity=-0.026 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHH
Q 041588 46 IVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTL 125 (540)
Q Consensus 46 ~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i 125 (540)
++..++..+..-.+.++|--++. +++....-.|.....-..+-.+.-++.+++-.++ | +-+++
T Consensus 377 f~~av~mG~g~~lv~tFLfWHle-d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-G---------------Hv~v~ 439 (618)
T KOG3762|consen 377 FFVAVVMGAGVGLVFTFLFWHLE-DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-G---------------HVNVM 439 (618)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh-hcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-c---------------cccee
Confidence 33444444444445566644544 5665555566556666666777788889999998 9 99999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHh
Q 041588 126 VVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQ 205 (540)
Q Consensus 126 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~ 205 (540)
..++....+=++.+... .+.|..+..-++.|+..+.++.++.+++++..|++-
T Consensus 440 ~lgLa~~~~Rf~~~S~L---------------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------ 492 (618)
T KOG3762|consen 440 YLGLACNVGRFLYYSYL---------------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------ 492 (618)
T ss_pred eehhhHHHHHHHHHHHh---------------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------
Confidence 99998888887777776 356677777789999999999999999999999987
Q ss_pred hhhhHHHHH-HHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCccc
Q 041588 206 KYVFFNWFF-FAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYY 262 (540)
Q Consensus 206 r~~~~~~~~-~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~ 262 (540)
|.++-++.. ..-.+|-.+|.+++|.+.+.+|=+..|.++++..++.++.+....+..
T Consensus 493 ~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~~l 550 (618)
T KOG3762|consen 493 RATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQLLL 550 (618)
T ss_pred hHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 555555532 233566677778889888888888889888887777777766655443
No 243
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.03 E-value=0.0065 Score=63.53 Aligned_cols=185 Identities=17% Similarity=0.063 Sum_probs=113.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+.+..++.........||+..+.|-.-+ ..-|++...+|.+.....+...++.++.|.++||.-.
T Consensus 266 ~~F~il~~~ygi~~g~F~~l~~~l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~-------------- 330 (480)
T KOG2563|consen 266 RQFIILAICYGIGLGLFNSLSTLLNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKK-------------- 330 (480)
T ss_pred ccHHHHHHHHhhhHHHHHHHHHHhhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhh--------------
Confidence 4555555555666666776655544333 3567777889999999999999999999999999833
Q ss_pred cchHHHHHHHHHHHHHH-HHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhc-cCCC
Q 041588 120 GRFRTLVVFSCIYSVGM-VLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGAD-QYDE 197 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d-~~~~ 197 (540)
-|+++++......++. .+..... .. .....++....+.|....+..|.-.-+..| -||.
T Consensus 331 -fk~~~~v~~~~~~v~~~~l~~~t~-----------------~~-~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv 391 (480)
T KOG2563|consen 331 -FKLTTLVLYLFALVGTLMLLTCTL-----------------FL-GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPV 391 (480)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhhc-----------------cC-CceEehhhhHHHHHHhhcCCCCcceeeeeeecccc
Confidence 4455555555555553 2222221 11 123445555556666666666766666654 4455
Q ss_pred CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC----cchhhhHhHHHHHHHHHHHHhcCcccccc
Q 041588 198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG----WSVGFGIPTAFTICSIIIVAAGFPYYRYQ 265 (540)
Q Consensus 198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g----~~~~f~i~~~~~~~~~i~~~~~~~~~~~~ 265 (540)
.+ ++-.|..+...++-+.+-..+.+...+..+ +...-+..+....+.+++..+.+++|+..
T Consensus 392 ~E-------~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~ 456 (480)
T KOG2563|consen 392 AE-------GTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRL 456 (480)
T ss_pred CC-------cccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhH
Confidence 44 344455556666666666666677766655 33333344555666677777777777644
No 244
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=96.99 E-value=0.024 Score=51.41 Aligned_cols=106 Identities=13% Similarity=0.102 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCC
Q 041588 79 GTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPC 158 (540)
Q Consensus 79 ~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 158 (540)
..-.++..+...++.+++..+.+++ | .|++++++.+.+.+-.......
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~l-g---------------~K~sm~lg~~~y~~y~~~~~~~---------------- 87 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNKL-G---------------PKWSMILGSLGYAIYIASFFYP---------------- 87 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH-h---------------hHHHHHHHHHHHHHHHHHHHhh----------------
Confidence 3444455566677778888888987 9 9999999997776544433322
Q ss_pred ccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 041588 159 VEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVL 228 (540)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~ 228 (540)
+...++.+-++.|+|.+..+.+...++.+.-++++ +++..+++....+.+.++|.++.
T Consensus 88 ------~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 88 ------NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred ------hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHH
Confidence 35677888889999999999999999887765544 55555665555555555555443
No 245
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=96.88 E-value=0.021 Score=62.89 Aligned_cols=154 Identities=10% Similarity=0.001 Sum_probs=99.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChh---HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhh
Q 041588 37 GGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLP---TAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVH 113 (540)
Q Consensus 37 ~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~---~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~ 113 (540)
+++|.+...++..++....||.+..+.|......++-+.. ..+........+..++.++.|++.-++ |
T Consensus 307 ~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r-------- 377 (599)
T PF06609_consen 307 KDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-R-------- 377 (599)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-c--------
Confidence 3457777778888899999999888888887777766553 456666666667777788888888776 7
Q ss_pred hhhhcccchHHHH-HHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhh
Q 041588 114 AIFKLQGRFRTLV-VFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGA 192 (540)
Q Consensus 114 ~~~~~~~r~~~i~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~ 192 (540)
|.|-.+ ++.+++.++..+++... +++. ...+...++.++|.|...........
T Consensus 378 -------~~Kw~li~~~~~~ta~~Gama~~~-----------------~~n~--~~~i~~~~l~g~giG~~~~~~~~~~q 431 (599)
T PF06609_consen 378 -------HIKWQLIFGSVLMTAFCGAMAAVR-----------------PDNK--NAAIAFLVLAGFGIGGILVPAIVIAQ 431 (599)
T ss_pred -------chhHHHHHHHHHHHHHHHHHHHcc-----------------CCCc--chHHHHHHHHHHhHHHHHHHHHHeeE
Confidence 666654 45555555555554331 1112 22334455667777765544444443
Q ss_pred ccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 041588 193 DQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYI 231 (540)
Q Consensus 193 d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l 231 (540)
-..|+++ .++..++....-.+|+.++..+-.-+
T Consensus 432 l~~p~~~------ig~a~gL~~s~R~~GGsIg~aIy~~I 464 (599)
T PF06609_consen 432 LIVPDED------IGTATGLTGSIRSIGGSIGYAIYNAI 464 (599)
T ss_pred eeeCchH------HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3345544 78888888788888888777665433
No 246
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=96.81 E-value=0.13 Score=52.80 Aligned_cols=159 Identities=14% Similarity=0.108 Sum_probs=89.7
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhh-----hhcCCCcc
Q 041588 35 TTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLAD-----AYLGQPAL 109 (540)
Q Consensus 35 ~~~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD-----~~~G~~~~ 109 (540)
.++..++++.+++..+....-. |...-+|..++ .-|.|.++.+.....+ .=+-.-++...+.| |+ |
T Consensus 26 ~~~d~~~illLl~LYllQGiP~-GL~~~iP~lL~-ak~vSyt~~a~fS~ay--~P~sLKllWaPiVDs~y~k~~-G---- 96 (510)
T KOG3574|consen 26 LKGDRSSILLLLFLYLLQGIPL-GLIGAIPLLLQ-AKGVSYTSQAIFSFAY--WPFSLKLLWAPIVDSVYSKRF-G---- 96 (510)
T ss_pred hhhhhhhHHHHHHHHHHcCCch-hHhhhhHHHhc-CCCcchhhhhhhhhhh--hHHHHHHHHHhhhHHHHHHhh-c----
Confidence 4555677777777777666554 44445566554 5677777665544333 23344667888888 76 9
Q ss_pred hhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhh
Q 041588 110 KHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSS 189 (540)
Q Consensus 110 ~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~ 189 (540)
|||.-++-+ -+.+|.+++.++...+... ++ +...++...+-...+++-++.+.-.-++-+
T Consensus 97 -----------rrksWvvp~-q~llG~~mllLs~~v~~~~----g~----ng~~p~v~~lt~~f~LLnflaAtQDIAVDg 156 (510)
T KOG3574|consen 97 -----------RRKSWVVPC-QYLLGLFMLLLSYLVDRGL----GG----NGGLPNVVALTLLFLLLNFLAATQDIAVDG 156 (510)
T ss_pred -----------cccceeeeh-HHHHHHHHHHHhhCCCccc----cc----CCCCcchHHHHHHHHHHHHHHhhhhhhhhH
Confidence 998866542 3344555555543222111 00 011122333333444555666655556666
Q ss_pred hhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 041588 190 FGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVL 228 (540)
Q Consensus 190 ~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~ 228 (540)
..-.+..+++ .+-+-.....+.|.|.+++..+.
T Consensus 157 wALtmLs~e~------lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 157 WALTMLSREN------LGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred HHHHhcCHhh------cCchhHHHHHHHhhhHHhhccee
Confidence 6656665555 66666667777788887776553
No 247
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=96.74 E-value=0.013 Score=59.98 Aligned_cols=152 Identities=16% Similarity=0.113 Sum_probs=105.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh-hHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 41 ASPFIIVNEVAERLAFFAIAVNMTAYL-VREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl-~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
..+.++....+.....|....+...++ ...+|+++.+.|-+...-.....+.++.-+...||..|
T Consensus 261 ~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~-------------- 326 (451)
T KOG2615|consen 261 SVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKG-------------- 326 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhcccccccccc--------------
Confidence 455555544444444444444445554 56799999999988877766666777777777777755
Q ss_pred cchHHHHHHHHHHHH-HHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588 120 GRFRTLVVFSCIYSV-GMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA 198 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~ 198 (540)
.-+..+.-..+.++ ..+++... .....++++..+-.+..+...++...++....|.+
T Consensus 327 -~~~a~l~~~l~~~vP~~llls~~---------------------~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~ 384 (451)
T KOG2615|consen 327 -NIKAVLLFSLLLIVPAFLLLSLA---------------------RTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQS 384 (451)
T ss_pred -chhhHHHHHHHHHHHHHHHHhcc---------------------ccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcc
Confidence 33333333333222 33333332 23466888888999999888999999998888887
Q ss_pred ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 041588 199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQ 234 (540)
Q Consensus 199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~ 234 (540)
. |++..++....+.++=++||.++|.+...
T Consensus 385 q------rG~~~Gi~~Sl~alaRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 385 Q------RGTLNGIFRSLGALARAIGPLVSGVIFSW 414 (451)
T ss_pred c------chHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence 6 99999999999999999999999887643
No 248
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=96.71 E-value=0.018 Score=61.79 Aligned_cols=151 Identities=10% Similarity=0.020 Sum_probs=111.7
Q ss_pred CcchHHHHHHHHHHHHHHHH-HHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhh
Q 041588 38 GWKASPFIIVNEVAERLAFF-AIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIF 116 (540)
Q Consensus 38 ~~~~~~~i~~~~~~~~~~~y-~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~ 116 (540)
+.|..+.+++..++...--. +-.-.++.|+...++++.++.+...+.......++.++...+--+.+|
T Consensus 238 ~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~----------- 306 (463)
T KOG2816|consen 238 PDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILG----------- 306 (463)
T ss_pred CCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 33455554444333322222 112144678888999999999999999999999998888744444459
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588 117 KLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD 196 (540)
Q Consensus 117 ~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~ 196 (540)
-++++.+|.....+...+.+++. +.+..+.+..+.+ ..+...|...++.+.+.+
T Consensus 307 ----~~~~i~lGl~~~~~~~~~~af~~---------------------~~w~~~~~~v~~~-~~~~~~pa~~s~~s~~v~ 360 (463)
T KOG2816|consen 307 ----EKRLISLGLLSEFLQLLLFAFAT---------------------ETWMMFAAGVVVA-LAGIVFPAIRAFASILVS 360 (463)
T ss_pred ----hhhHhhHHHHHHHHHHHHHHHhc---------------------cchhhhHHHHHHH-hhcchhHHHHhHHHhhcc
Confidence 88899999999999999998872 3455565554444 455677899999999998
Q ss_pred CCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 041588 197 EADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYI 231 (540)
Q Consensus 197 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l 231 (540)
+++ ++..+++....-.+.++++|.+-+.+
T Consensus 361 ~~e------~g~v~~~is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 361 PEE------QGKVFGIISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred ccc------ccchhhHHHHHHHHhhhhhHHHHHHH
Confidence 887 89999999999999999998887755
No 249
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=96.71 E-value=0.0028 Score=66.17 Aligned_cols=170 Identities=13% Similarity=0.100 Sum_probs=113.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
+....+..+.+...+.+-.=.++++.|+. .+|.+.+-.+++-.+--+...+.+++-|..|||+ . |-.
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc-~-----------sr~ 98 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRC-T-----------SRY 98 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceeccccccccccc-c-----------ccc
Confidence 45555666666666766666788888885 6899888777777777777888899999999987 2 112
Q ss_pred cchHHHHH-HHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588 120 GRFRTLVV-FSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA 198 (540)
Q Consensus 120 ~r~~~i~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~ 198 (540)
||||..+. +....+++..++..++-+-.. -|++ .-.+........++++..+.=+..-..+...-++.+|+...+
T Consensus 99 GRRRPfI~~~s~~i~~~l~Lig~aaDig~~---lgd~-~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d 174 (498)
T KOG0637|consen 99 GRRRPFILAGSLLIAVSLFLIGYAADIGLL---LGDN-ERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGD 174 (498)
T ss_pred ccccchHHHhhHHHHHHHhhhhhHhhhhHH---hcCC-cccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccCh
Confidence 26666555 555677777777766421110 0111 000012234566677777777777677788889999998766
Q ss_pred ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 041588 199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYI 231 (540)
Q Consensus 199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l 231 (540)
+.+ .++.+++.+...+|+.+|..+++|+
T Consensus 175 ~~~-----~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 175 AKK-----TRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred hhh-----hccchhHHHHHHhcceeeeeccccc
Confidence 522 2288899999999998887777654
No 250
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.66 E-value=0.0075 Score=67.14 Aligned_cols=64 Identities=20% Similarity=0.233 Sum_probs=55.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHH-HHHHHHHHHHHHHHhhhh
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDW-IGAAYVLTILGAFLADAY 103 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~-~~~~~~~~~~gG~laD~~ 103 (540)
+.+...++...++..++-+..+++|-|+.+++|.+...|..+.+.. ..+..++.++||++.-|+
T Consensus 392 ~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkf 456 (735)
T KOG3626|consen 392 PIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKF 456 (735)
T ss_pred chHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeee
Confidence 5566778899999999999999999999999999999999888665 445668899999998886
No 251
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=96.57 E-value=0.00056 Score=74.90 Aligned_cols=176 Identities=14% Similarity=0.073 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHH-HHHHHHHHHHHHhhhhcCCCcchhhhhhhhc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIG-AAYVLTILGAFLADAYLGQPALKHVHAIFKL 118 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~-~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~ 118 (540)
+.+....+...++....-++.+++|.|+.++++++.+++.++.+...+ +..++.++||++..|+ . .+
T Consensus 305 p~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~-k-l~---------- 372 (539)
T PF03137_consen 305 PVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKF-K-LS---------- 372 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEe-c-Cc----------
Confidence 455667788888899999999999999999999999999988877644 6678899999999987 3 11
Q ss_pred ccchHHHHHHHHHHHHHHHH---HHH--------hcccCCC-----C------CCCCCC-----------CCCccCCCch
Q 041588 119 QGRFRTLVVFSCIYSVGMVL---LTV--------SGSLDSL-----R------PPACKE-----------RPCVEVNGGQ 165 (540)
Q Consensus 119 ~~r~~~i~~~~~~~~~~~~~---l~~--------~~~~~~~-----~------~~~~~~-----------~~~~~~~~~~ 165 (540)
.|+.+....+...++.++ +.+ ++..... . .++|+. -.|...-..+
T Consensus 373 --~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~ 450 (539)
T PF03137_consen 373 --ARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNK 450 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccc
Confidence 222232222222222221 111 1000001 0 111211 0133221123
Q ss_pred hHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHhhhhcc
Q 041588 166 NGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFA-INMGAIFGITVLVYIQEQK 235 (540)
Q Consensus 166 ~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~-~~iG~~i~p~v~~~l~~~~ 235 (540)
...+++..++..+..+..........-+..++++ |..+.++.... --+|.+-||++-|.+.|..
T Consensus 451 ~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 451 LIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp -----------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHhcccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 3444444444444444433333333447777776 88999886554 4678888999999998864
No 252
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=96.54 E-value=0.019 Score=56.12 Aligned_cols=154 Identities=18% Similarity=0.187 Sum_probs=94.2
Q ss_pred HHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhc
Q 041588 64 TAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSG 143 (540)
Q Consensus 64 ~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~ 143 (540)
..|+.+.+|+...+.+.+...-.+..+++..+.|-++|+. | ||+.-+..++.++ +..+.-
T Consensus 60 vYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-G---------------RKracvtycitYi----LsCiTK 119 (454)
T KOG4332|consen 60 VYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-G---------------RKRACVTYCITYI----LSCITK 119 (454)
T ss_pred eeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-c---------------cccceeeehHHHH----HHHHhh
Confidence 3567788999999999888888888888888999999997 9 9998766554444 333332
Q ss_pred ccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhh-hhccCCCCChHHHHhhhhhHHH-HHHHHHHHH
Q 041588 144 SLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSF-GADQYDEADEKEAIQKYVFFNW-FFFAINMGA 221 (540)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~-~~d~~~~~~~~~~~~r~~~~~~-~~~~~~iG~ 221 (540)
.++++-.+++++++-|+.++...++.-+. ++|.-++++=+... ...-|+- ..+++.+-+
T Consensus 120 ------------------hSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~FeqqW-ls~TFskA~ffgNglvA 180 (454)
T KOG4332|consen 120 ------------------HSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFEQQW-LSVTFSKAVFFGNGLVA 180 (454)
T ss_pred ------------------cCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCChHhh-hhHHHHHHHHhhccHHH
Confidence 12456678899999999888766655444 35554333211100 1111111 122333334
Q ss_pred HHHHHHHHhhhhcc--CcchhhhHhHHHHHHHHHHHH
Q 041588 222 IFGITVLVYIQEQK--GWSVGFGIPTAFTICSIIIVA 256 (540)
Q Consensus 222 ~i~p~v~~~l~~~~--g~~~~f~i~~~~~~~~~i~~~ 256 (540)
+++.+.+-.++|.. |--.+|-..+...+++..+.+
T Consensus 181 iiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil 217 (454)
T KOG4332|consen 181 IIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVIL 217 (454)
T ss_pred HHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHH
Confidence 44444555666654 456677655555555555443
No 253
>PRK03612 spermidine synthase; Provisional
Probab=96.51 E-value=0.14 Score=56.06 Aligned_cols=158 Identities=13% Similarity=0.053 Sum_probs=82.4
Q ss_pred HHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHH-HHHHHHHH
Q 041588 63 MTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYS-VGMVLLTV 141 (540)
Q Consensus 63 l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~-~~~~~l~~ 141 (540)
..-.+...+|-+..+.+++++++.++..++..++|+++++... ++..+.++..+.. +...++..
T Consensus 37 ~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~---------------~~~~~e~~i~l~~~~~~~ll~~ 101 (521)
T PRK03612 37 LGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAA---------------GFVAVELLLALLGGLSALILYA 101 (521)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH---------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555678888888999999999999998888888755422 2222211211111 11111111
Q ss_pred hcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHH
Q 041588 142 SGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGA 221 (540)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~ 221 (540)
..... ......++...++.++..|+..|....+..+... ++ .+...+-.|....+|+
T Consensus 102 ~~~~~----------------~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~ly~~ntlGa 158 (521)
T PRK03612 102 AFAFQ----------------GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATVLAADYLGA 158 (521)
T ss_pred HHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhhHhHHhHHH
Confidence 10000 0011112233334556666655655555443221 11 3445677788888899
Q ss_pred HHHHHHHHhhh-hccCc-chhhhHhHHHHHHHHHHHHhc
Q 041588 222 IFGITVLVYIQ-EQKGW-SVGFGIPTAFTICSIIIVAAG 258 (540)
Q Consensus 222 ~i~p~v~~~l~-~~~g~-~~~f~i~~~~~~~~~i~~~~~ 258 (540)
++|.++.+++. ...|- ...+.++.+..+++++.++..
T Consensus 159 ~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~~~ 197 (521)
T PRK03612 159 LVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFLWLF 197 (521)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888654 35664 344443333334443333333
No 254
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=96.16 E-value=0.2 Score=54.66 Aligned_cols=151 Identities=9% Similarity=-0.024 Sum_probs=89.2
Q ss_pred HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCC
Q 041588 69 REMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSL 148 (540)
Q Consensus 69 ~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~ 148 (540)
..+|.+......+... .........+.+-|+. | ||.....+..+..++.+..+....
T Consensus 346 ~~lg~~~~~~~~~~~~---~~~p~~~~~~~~~~~~-g---------------R~~~~~~~~~~~~~~~~~~~~~~~---- 402 (521)
T KOG0255|consen 346 SGLGGNIYLNFTLSGL---VELPAYFRNGLLLPEF-G---------------RRPPLFLSLFLAGIGLLLFGWLPD---- 402 (521)
T ss_pred hhcCchHHHHHHHHHH---HHhhHHHHHHHHHHHh-C---------------cHHHHHHHHHHHHHHHHHHHHhhc----
Confidence 3455444433333322 4444455568889998 9 999999999999999888887631
Q ss_pred CCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 041588 149 RPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVL 228 (540)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~ 228 (540)
..+.....+...+...+.+..........+|++|+.. |..+.+.......+|++++|.+.
T Consensus 403 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~------r~~~~~~~~~~~~~~~i~ap~~~ 462 (521)
T KOG0255|consen 403 --------------DLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVV------RNTAVGAISAAARLGSILAPLFP 462 (521)
T ss_pred --------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111111122222222233333445777889999987 89999999999999999999887
Q ss_pred HhhhhccCcchhhhHhHHHHHHHHHHHHhcCcccc
Q 041588 229 VYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYR 263 (540)
Q Consensus 229 ~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~ 263 (540)
..... ......+.+.+....+..++.....|+.+
T Consensus 463 ~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~ 496 (521)
T KOG0255|consen 463 LLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETK 496 (521)
T ss_pred HHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccC
Confidence 55543 32233332223333333333334444433
No 255
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=96.14 E-value=0.0036 Score=65.61 Aligned_cols=123 Identities=18% Similarity=0.172 Sum_probs=88.8
Q ss_pred CCccchhHHHHHHHHHhhhhhHHhHhhhhcCCCCc-----ccccc--hhHHHH---------HHHHHHhhhhHHHHHhhh
Q 041588 398 GCVPIFSAINALILVPIYEKVIVPILRKLTGQTQC-----DVKTI--LSHLWH---------SAEVFTYVGQLEFFYNEA 461 (540)
Q Consensus 398 ~~~~~~n~i~iii~~p~~~~~~~p~~~r~~~~~~l-----~~~~~--~s~~~~---------~~e~~~~~~~~~~~~~~a 461 (540)
+.++.+--+..+++.|+.+.+-++.-|++-.-... .+-.. ...+|| +||...+|....++.|..
T Consensus 71 Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f 150 (493)
T KOG1330|consen 71 GLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSF 150 (493)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcC
Confidence 56666677777888899887765333322110000 11111 466777 999999999999999999
Q ss_pred ccccchhhHhHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccCcCCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 041588 462 TDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDLNMSKLDYFYWILAGINGLNFFVYFWVA 534 (540)
Q Consensus 462 P~~~r~~~~~~~~~~~~ig~~l~~~l~~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~la~l~~~~~~~y~~~~ 534 (540)
|+..||+..+++++.+-+|+.+|.+....+.+.+. .| .+.|+..|+++++..++-+++.
T Consensus 151 ~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~----~W----------r~af~~~avl~vi~~~L~~~f~ 209 (493)
T KOG1330|consen 151 PDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF----WW----------RWAFRGSAVLGVIVGLLVFLFV 209 (493)
T ss_pred cchhhhHHHHHhhhhcccccceeEEeeeeeccCcc----ce----------EEEEEeehHHHHHHHHHHHhhc
Confidence 99999999999999999999999888887775442 24 3678888888888765544443
No 256
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=96.01 E-value=0.33 Score=52.23 Aligned_cols=163 Identities=10% Similarity=0.027 Sum_probs=91.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCCh-----hHHHHHHHHH-HHHHHHHHHHHHHHhhhhcCCCcchhhh
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSL-----PTAGTHVTDW-IGAAYVLTILGAFLADAYLGQPALKHVH 113 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~-----~~a~~~~~~~-~~~~~~~~~~gG~laD~~~G~~~~~~~~ 113 (540)
|.+..+.+..|+-.++|+.+.+ +.|.+..+. +....+-+.. .-...+..++-+++++|+ +
T Consensus 7 ~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~-------- 72 (472)
T TIGR00769 7 KKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-S-------- 72 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-C--------
Confidence 5566666777777777765543 456665532 2233333322 223334478889999998 9
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHhcc--cCCCCCCC-CCCC-CCccC---------CCchhHHHHHHHHHHHHhc
Q 041588 114 AIFKLQGRFRTLVVFSCIYSVGMVLLTVSGS--LDSLRPPA-CKER-PCVEV---------NGGQNGFLLCALGLIALGT 180 (540)
Q Consensus 114 ~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~--~~~~~~~~-~~~~-~~~~~---------~~~~~~~~~~~~~l~~~g~ 180 (540)
|++.+-+....+.+.++++++.-. -+.++|.+ |++. .-.++ .......+++..=+.+
T Consensus 73 -------~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~--- 142 (472)
T TIGR00769 73 -------KEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWG--- 142 (472)
T ss_pred -------HHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHH---
Confidence 998888777666665555554311 11122111 1110 00000 0011112222211111
Q ss_pred CCCcc-chhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 041588 181 RDIKP-CVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQ 232 (540)
Q Consensus 181 g~~~~-~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~ 232 (540)
...-+ ..+++..|.+..++ -.+.++++..+.|+|..+++.+..++.
T Consensus 143 ~~vvS~lFW~fandi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 143 SVVLSLLFWGFANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122 56788899998776 678999999999999999999988876
No 257
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=95.93 E-value=0.084 Score=56.07 Aligned_cols=136 Identities=15% Similarity=0.024 Sum_probs=100.6
Q ss_pred HHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHH
Q 041588 60 AVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLL 139 (540)
Q Consensus 60 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l 139 (540)
-..+..|+... |++....|..=+...+....++.+..++.+|+ | --|+=+++.....+...+.
T Consensus 278 ~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-G---------------lvr~G~~~l~~q~~~L~~~ 340 (432)
T PF06963_consen 278 GGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-G---------------LVRAGLWSLWWQWVCLALC 340 (432)
T ss_pred cHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---------------chhhHHHHHHHHHHHHHHH
Confidence 34578898876 99999999999999999999999999999998 9 8888888887665555444
Q ss_pred HHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHH
Q 041588 140 TVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINM 219 (540)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~i 219 (540)
..+-..+... .+..+...++.++++-=+|.=++.-+...++.|..|+++ |+...+..+...++
T Consensus 341 v~~~~~~~~~-----------~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~sl~~l 403 (432)
T PF06963_consen 341 VVSFWAPGSP-----------FSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNSLQSL 403 (432)
T ss_pred HHHHhcCCCC-----------chhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHHHHHH
Confidence 4432222100 012345556666666667766777888888888888776 99999998888888
Q ss_pred HHHHHHHHHH
Q 041588 220 GAIFGITVLV 229 (540)
Q Consensus 220 G~~i~p~v~~ 229 (540)
.-++...++-
T Consensus 404 f~ll~~~~~i 413 (432)
T PF06963_consen 404 FELLSFVLTI 413 (432)
T ss_pred HHHHHHHHHh
Confidence 8777655543
No 258
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=95.87 E-value=0.33 Score=52.64 Aligned_cols=89 Identities=11% Similarity=0.076 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHH
Q 041588 125 LVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAI 204 (540)
Q Consensus 125 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~ 204 (540)
+.+|.++..++++.+.++..... +....+..+++++.+++.+|.-+..|.-.+++++..|++-
T Consensus 348 fa~g~~~~g~~f~~l~~~~~~~~------------~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~----- 410 (493)
T PRK15462 348 FALGLGLMSAGFCILTLSARWSA------------MYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGV----- 410 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC------------CCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHH-----
Confidence 55677788888888876542111 0012356677788888999999999999999999999887
Q ss_pred hhhhhHHHHHHHH-HHHHHHHHHHHHhh
Q 041588 205 QKYVFFNWFFFAI-NMGAIFGITVLVYI 231 (540)
Q Consensus 205 ~r~~~~~~~~~~~-~iG~~i~p~v~~~l 231 (540)
++..++.++... .+|..++..+.+..
T Consensus 411 -~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 411 -TGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999987643 57766666655544
No 259
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=95.82 E-value=0.23 Score=52.19 Aligned_cols=156 Identities=13% Similarity=0.030 Sum_probs=93.8
Q ss_pred HHHHHHHhhHh-cCCChhHHH-HHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHH
Q 041588 60 AVNMTAYLVRE-MHQSLPTAG-THVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMV 137 (540)
Q Consensus 60 ~~~l~~yl~~~-lg~s~~~a~-~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~ 137 (540)
-+++..|++++ .|++..+.. -+.-+++-.+....++.+.++|.. | .|++++.+++...+...
T Consensus 23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~---------------Ykpviil~~~~~i~t~~ 86 (412)
T PF01770_consen 23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-R---------------YKPVIILQALSYIITWL 86 (412)
T ss_pred CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-h---------------hhHHHHHHHHHHHHHHH
Confidence 46788999987 899988875 344455566667788889999987 8 88888888877777777
Q ss_pred HHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHH
Q 041588 138 LLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAI 217 (540)
Q Consensus 138 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~ 217 (540)
++... .+...+-+.-++.|++.+. -.++.+-.|..-+++. =||. .++-..+.
T Consensus 87 lll~~---------------------~sv~~mq~~q~~yg~~~a~----evay~sYiys~v~~~~-yq~v--ts~~raa~ 138 (412)
T PF01770_consen 87 LLLFG---------------------TSVLAMQLMQFFYGLATAA----EVAYYSYIYSVVDKEH-YQKV--TSYTRAAT 138 (412)
T ss_pred HHHHH---------------------CcHHHHHHHHHHHHHHHHH----HHHHHHHheeecCHHH-HHHH--HHHHHHHH
Confidence 76665 2355555666666666543 3333333343332221 1233 33333344
Q ss_pred HHHHHHHHHHHHhhhh--ccCcchhhhHhHHHHHHHHHHHHhcC
Q 041588 218 NMGAIFGITVLVYIQE--QKGWSVGFGIPTAFTICSIIIVAAGF 259 (540)
Q Consensus 218 ~iG~~i~p~v~~~l~~--~~g~~~~f~i~~~~~~~~~i~~~~~~ 259 (540)
-+|-.++..++=.+.. ..++....++......+++++.++..
T Consensus 139 l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP 182 (412)
T PF01770_consen 139 LVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLP 182 (412)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4444444433333332 34567777777777777766655543
No 260
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=95.79 E-value=0.13 Score=44.15 Aligned_cols=74 Identities=16% Similarity=0.230 Sum_probs=55.0
Q ss_pred HHHHHHhhhhHHHHHhhhccccchhhHhHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccCcCCCCchhHHHHHHHHHHH
Q 041588 444 SAEVFTYVGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDLNMSKLDYFYWILAGIN 523 (540)
Q Consensus 444 ~~e~~~~~~~~~~~~~~aP~~~r~~~~~~~~~~~~ig~~l~~~l~~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~la~l~ 523 (540)
++.....+.......+..|++.|+..+++......+|..+++.+.+.+.... + ..+.|++.+.+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~----------~~~~~~~~~~~~ 127 (141)
T TIGR00880 63 FGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL-----G----------WRAPFLFLAILA 127 (141)
T ss_pred HHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc-----c----------hHHHHHHHHHHH
Confidence 5555666778888999999999999999999999999999999887765211 2 335677766666
Q ss_pred HHHHHHHHH
Q 041588 524 GLNFFVYFW 532 (540)
Q Consensus 524 ~~~~~~y~~ 532 (540)
++..+....
T Consensus 128 ~~~~~~~~~ 136 (141)
T TIGR00880 128 LAAFILLAF 136 (141)
T ss_pred HHHHHHHhh
Confidence 666554443
No 261
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=95.77 E-value=3.2 Score=43.67 Aligned_cols=50 Identities=20% Similarity=0.104 Sum_probs=41.5
Q ss_pred HHHHHHhhhhHHHHHhhhccccchhhHhHHHHHhHHHHHHHHHHHHHHHh
Q 041588 444 SAEVFTYVGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIER 493 (540)
Q Consensus 444 ~~e~~~~~~~~~~~~~~aP~~~r~~~~~~~~~~~~ig~~l~~~l~~~~~~ 493 (540)
+....+++.....+.++.|++.|..++|.-...-++|..+++.+.-.+++
T Consensus 347 LlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~ 396 (402)
T PF02487_consen 347 LLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP 396 (402)
T ss_pred HhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 55556677777778889999999999999999999999998888776654
No 262
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=95.68 E-value=0.024 Score=60.64 Aligned_cols=200 Identities=11% Similarity=0.017 Sum_probs=116.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHH-H-HHHHHHHhhhhcCCCcchhhhh
Q 041588 37 GGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYV-L-TILGAFLADAYLGQPALKHVHA 114 (540)
Q Consensus 37 ~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~-~-~~~gG~laD~~~G~~~~~~~~~ 114 (540)
-.|+..+.+++..+...+.+..+-+..+.+....++++.+++....++......+ . .+...+..-|. | +..
T Consensus 259 ~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l-~----~i~-- 331 (488)
T KOG2325|consen 259 LDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRL-G----KID-- 331 (488)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHh-h----hhc--
Confidence 3456777777888888888887777777777777888888775555544332222 2 33334444443 4 001
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHhc-c--cCCCC-C---CCCCC--CC-CccCCCchhHHHHHHH-HHHHHhcCCC
Q 041588 115 IFKLQGRFRTLVVFSCIYSVGMVLLTVSG-S--LDSLR-P---PACKE--RP-CVEVNGGQNGFLLCAL-GLIALGTRDI 183 (540)
Q Consensus 115 ~~~~~~r~~~i~~~~~~~~~~~~~l~~~~-~--~~~~~-~---~~~~~--~~-~~~~~~~~~~~~~~~~-~l~~~g~g~~ 183 (540)
+|+.+..+.++....+.+....- . .|... + ..|+- .+ |......+...++++. ++.|++.-.+
T Consensus 332 ------~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~ 405 (488)
T KOG2325|consen 332 ------KRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFI 405 (488)
T ss_pred ------cceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccc
Confidence 34444444333323222222111 0 11111 1 11221 22 6666556666665553 3455655556
Q ss_pred ccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHH
Q 041588 184 KPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIV 255 (540)
Q Consensus 184 ~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~ 255 (540)
.....++.+++..+.+ .+..-+++.....++-.++|++...+....|.++...+..+..++....+
T Consensus 406 ~~~~~tlySkiLgp~~------q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~ 471 (488)
T KOG2325|consen 406 STALDTLYSKILGPRD------QGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALW 471 (488)
T ss_pred cchHHHHHHHHhCCcc------ccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHH
Confidence 6677888889988776 66677777788889999999999888888888877766555544444333
No 263
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=95.44 E-value=0.17 Score=40.80 Aligned_cols=72 Identities=15% Similarity=0.068 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHH
Q 041588 51 AERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSC 130 (540)
Q Consensus 51 ~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~ 130 (540)
+.|++| ++.+| .+.++.++|.++++.+.+.-.+++.++.+...++.++. + +++.+..+.+
T Consensus 6 igRFay---TplLP-~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~---------------~~~~~~~~l~ 65 (85)
T PF06779_consen 6 IGRFAY---TPLLP-LMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-R---------------PRRLLRAGLL 65 (85)
T ss_pred hHHHHH---HhHhH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c---------------HHHHHHHHHH
Confidence 345555 34444 46788999999999999999999999999999999986 7 8888888988
Q ss_pred HHHHHHHHHHHh
Q 041588 131 IYSVGMVLLTVS 142 (540)
Q Consensus 131 ~~~~~~~~l~~~ 142 (540)
+..+.++.+++.
T Consensus 66 ~~~~~~~~ma~~ 77 (85)
T PF06779_consen 66 LTVLSTAAMALT 77 (85)
T ss_pred HHHHHHHHHHHH
Confidence 888888888876
No 264
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=89.67 E-value=3.3 Score=40.88 Aligned_cols=85 Identities=16% Similarity=0.124 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHh
Q 041588 165 QNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIP 244 (540)
Q Consensus 165 ~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~ 244 (540)
+...-+++..++-.+.|.++|.+.-+-.+..|++. |.+.++|+-.-.|+-.-++-...-.=....+-+..|.+|
T Consensus 343 s~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~ic 416 (454)
T KOG4332|consen 343 SPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGIC 416 (454)
T ss_pred CchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhhhh
Confidence 44445677778888888999999988888888876 999999998888876544321100001123456789888
Q ss_pred HHHHHHHHHHH
Q 041588 245 TAFTICSIIIV 255 (540)
Q Consensus 245 ~~~~~~~~i~~ 255 (540)
.+.+.++.+..
T Consensus 417 S~~~~~a~i~~ 427 (454)
T KOG4332|consen 417 SAFLFVASILQ 427 (454)
T ss_pred HHHHHHHHHHH
Confidence 88877775543
No 265
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=89.63 E-value=5 Score=43.02 Aligned_cols=115 Identities=17% Similarity=0.088 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHh
Q 041588 126 VVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQ 205 (540)
Q Consensus 126 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~ 205 (540)
-.+..++..+++++........ .+.+..+.++++.+.+++++|.=+..|.-.++.+...|+.-
T Consensus 365 alGl~l~g~~fl~l~~~~~~~~-----------~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~------ 427 (498)
T COG3104 365 ALGLILAGLGFLILLLAGIWFG-----------GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL------ 427 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc-----------CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH------
Confidence 3455566666666665521110 01123467888899999999999999999999999988865
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHh------hhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588 206 KYVFFNWFFFAINMGAIFGITVLVY------IQEQKGWSVGFGIPTAFTICSIIIVAA 257 (540)
Q Consensus 206 r~~~~~~~~~~~~iG~~i~p~v~~~------l~~~~g~~~~f~i~~~~~~~~~i~~~~ 257 (540)
.+..++.+.+....|..++..+++. ..+.......|+.++...++..++...
T Consensus 428 ~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~ 485 (498)
T COG3104 428 KSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLL 485 (498)
T ss_pred HHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 6778888888888888777666652 223334555666665555444444333
No 266
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=89.36 E-value=10 Score=40.97 Aligned_cols=72 Identities=15% Similarity=0.137 Sum_probs=56.1
Q ss_pred HHHHHHhhhhHHHHHhhhccccchhhHhHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccCcCCCCchhHHHHHHHHHHH
Q 041588 444 SAEVFTYVGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDLNMSKLDYFYWILAGIN 523 (540)
Q Consensus 444 ~~e~~~~~~~~~~~~~~aP~~~r~~~~~~~~~~~~ig~~l~~~l~~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~la~l~ 523 (540)
++|.... +....+++-.|++.|++++|++.....+|..+++.+.+.+.. -+|- ...+-.|+.++..+
T Consensus 127 vaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s------~gWr------~y~~Ln~Isl~s~~ 193 (511)
T TIGR00806 127 VTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVT------LGWI------SYSTLNIISLVFMT 193 (511)
T ss_pred HHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCch------hHHHHHHHHHHHHH
Confidence 8888888 999999999999999999999999999999999999998431 2562 22333466666665
Q ss_pred HHHHH
Q 041588 524 GLNFF 528 (540)
Q Consensus 524 ~~~~~ 528 (540)
+..++
T Consensus 194 ~a~~~ 198 (511)
T TIGR00806 194 FSVFL 198 (511)
T ss_pred HHHHH
Confidence 55443
No 267
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.67 E-value=11 Score=40.58 Aligned_cols=92 Identities=17% Similarity=0.091 Sum_probs=55.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCCh
Q 041588 121 RFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADE 200 (540)
Q Consensus 121 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~ 200 (540)
|++++.++.++..++.++.-+....++-.+|+-+. ....+++.....+.-.+.|++-++.......++++.+|++
T Consensus 311 ~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~---~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~-- 385 (461)
T KOG3098|consen 311 RKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSP---PLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYPDD-- 385 (461)
T ss_pred cCcchhHHHHHHHHHHHHHhccccccCCCCCCccc---ccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc--
Confidence 99999999998888877776653211100010000 0011223334444556788999999999999999999554
Q ss_pred HHHHhhhhhHHHHHHHHHHHHH
Q 041588 201 KEAIQKYVFFNWFFFAINMGAI 222 (540)
Q Consensus 201 ~~~~~r~~~~~~~~~~~~iG~~ 222 (540)
|..+++++-+--.++..
T Consensus 386 -----~~~~fsi~kfyq~~~s~ 402 (461)
T KOG3098|consen 386 -----RAQAFSLFKFYQSVASC 402 (461)
T ss_pred -----hHHHHHHHHHHHHHHHH
Confidence 55666665444444443
No 268
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=86.42 E-value=4.8 Score=42.36 Aligned_cols=62 Identities=5% Similarity=-0.115 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 041588 165 QNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQ 232 (540)
Q Consensus 165 ~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~ 232 (540)
+.+..++.++..|+..|....+....+.|..++++ |.-.++.-.++-++|..++..++-.+.
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 35666666777888888888888888888776655 778888888888888888777765554
No 269
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=85.98 E-value=3.8 Score=43.81 Aligned_cols=56 Identities=11% Similarity=0.196 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 041588 166 NGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITV 227 (540)
Q Consensus 166 ~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v 227 (540)
-+..++..++.|+..|-..+.......+..++++ |..+-++..++.++|-.+|..+
T Consensus 372 d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e------~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 372 DAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE------REVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666788899988877777777777766543 5555556666666666655544
No 270
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=82.33 E-value=78 Score=34.23 Aligned_cols=68 Identities=12% Similarity=0.075 Sum_probs=48.5
Q ss_pred HhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHH
Q 041588 178 LGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTIC 250 (540)
Q Consensus 178 ~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~ 250 (540)
+..-.....--..+.+++|+++ +|..+++-+....++..++...+++.+.+..||..+..+.-+++++
T Consensus 278 ~~~nlve~~~k~~v~~~~p~~~-----~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 278 ISINLVEVTWKSKLKAQYPSPN-----EYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3333444555566778887654 2888999998888888877777779999999999877764444444
No 271
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=80.84 E-value=30 Score=35.42 Aligned_cols=114 Identities=12% Similarity=0.067 Sum_probs=61.2
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhh
Q 041588 36 TGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAI 115 (540)
Q Consensus 36 ~~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~ 115 (540)
+..-|.++.+-...+....+|-+. .+|......++|...- +.+ ......+.++.+.+-.+ +|
T Consensus 25 ~~~~knv~i~s~~fl~~f~a~~gl-~nlq~~vn~~lg~~sl--~~~----y~~l~~s~m~~~~~Ir~-~g---------- 86 (390)
T KOG3097|consen 25 LGILKNVLILSIAFLLTFTAYLGL-QNLQTSVNYDLGTVSL--GAL----YLSLIDSSMFMPLLIRF-LG---------- 86 (390)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHH-HHHHHHHhcCcccchh--hhh----hHHHHHHHHHHHHHHHH-Hh----------
Confidence 334466666655555555555544 5666665544443222 111 11223334444445554 59
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhcc
Q 041588 116 FKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQ 194 (540)
Q Consensus 116 ~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~ 194 (540)
-|.+++++...+... ......| .+..+..+-...|.|.+..++...++.+++
T Consensus 87 -----~K~tm~lav~~Y~ly----iA~Nl~p------------------r~~tlVPa~~~~G~aa~p~W~SkgtYlT~~ 138 (390)
T KOG3097|consen 87 -----TKWTMVLAVFPYALY----IAANLEP------------------RYETLVPAGLVLGMAAGPIWASKGTYLTPM 138 (390)
T ss_pred -----hHHHHHHHHHHHHHH----HHhhcch------------------hHHhhccHHHhhccccccccccCcceecHH
Confidence 999998887544432 1111111 233445556678888888887777776554
No 272
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=78.39 E-value=4 Score=43.32 Aligned_cols=91 Identities=10% Similarity=0.019 Sum_probs=57.1
Q ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHh-cCCChh-----H-----------HHHHHHHHHHHHHHHHHHH
Q 041588 34 RTTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVRE-MHQSLP-----T-----------AGTHVTDWIGAAYVLTILG 96 (540)
Q Consensus 34 ~~~~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~-lg~s~~-----~-----------a~~~~~~~~~~~~~~~~~g 96 (540)
..+..+|..+.+++.+++...+++...-+-+.++-++ +|-++. + -.+-..+......+...+-
T Consensus 273 ~~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~ 352 (498)
T KOG0637|consen 273 ALKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLV 352 (498)
T ss_pred hHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence 3556778999999999999999887666655555432 221111 1 1233344455666778888
Q ss_pred HHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHH
Q 041588 97 AFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLT 140 (540)
Q Consensus 97 G~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~ 140 (540)
-++.|++ | -|+.++.+...+.++..+..
T Consensus 353 ~~l~~~~-g---------------~r~~y~~~~~~f~~~~~~~g 380 (498)
T KOG0637|consen 353 EKLSRKF-G---------------TRKRYWGGVNAFGLATGLAG 380 (498)
T ss_pred HHHHHhc-C---------------cceEEeehhHHHHHHHHHHh
Confidence 9999998 8 66665555544444444444
No 273
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=77.44 E-value=3.6 Score=43.91 Aligned_cols=46 Identities=13% Similarity=0.089 Sum_probs=36.9
Q ss_pred cchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 041588 185 PCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG 236 (540)
Q Consensus 185 ~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g 236 (540)
-....+.+++-|+.. -++.|++.....|+|..++..++..+.+..+
T Consensus 337 mP~lvl~a~lcP~G~------Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 337 MPSLVLAARLCPKGS------EGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred HHHHHHHHHHCCCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344556789999887 6889999999999999999999888866544
No 274
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=70.50 E-value=1.6e+02 Score=31.84 Aligned_cols=169 Identities=11% Similarity=0.021 Sum_probs=92.8
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCC---hhHHHHHHHHHHH-HHHHHHHHHHHHhhhhcCCCcchhh
Q 041588 37 GGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQS---LPTAGTHVTDWIG-AAYVLTILGAFLADAYLGQPALKHV 112 (540)
Q Consensus 37 ~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s---~~~a~~~~~~~~~-~~~~~~~~gG~laD~~~G~~~~~~~ 112 (540)
.-++.+..+.+..++..+.|+.+.. +.+.+.++ ......+-..... .+.+..++-+++.+++ -
T Consensus 24 ~E~~kflpl~Ll~f~I~~ny~~lR~-----lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t------- 90 (509)
T COG3202 24 YELKKFLPLALLFFCILFNYNLLRS-----LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-T------- 90 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-C-------
Confidence 3456777777777777666654432 34444443 3333344433333 5667788899999997 8
Q ss_pred hhhhhcccchHHHHHHHHHHHHHHHHHHHhccc--CCCCCCCCCCC--CCccC----------CCchhHHHHHHHHHHHH
Q 041588 113 HAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSL--DSLRPPACKER--PCVEV----------NGGQNGFLLCALGLIAL 178 (540)
Q Consensus 113 ~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~--~~~~~----------~~~~~~~~~~~~~l~~~ 178 (540)
|.++.-+....+...++++++.-.. +.++|...-.. ....+ +..+...+++.-=+.+
T Consensus 91 --------~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWg- 161 (509)
T COG3202 91 --------REKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWG- 161 (509)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHH-
Confidence 8888887777777766666655320 11121100000 00001 0111122221111110
Q ss_pred hcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 041588 179 GTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQ 234 (540)
Q Consensus 179 g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~ 234 (540)
.-...-.-..+.-|+...++ -.++++.++...|++..++..+..++.++
T Consensus 162 -slV~S~lFw~faNeitt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 162 -SLVLSLLFWQFANEITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred -HHHHHHHHHHHHHHhhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 00011123455566666554 67899999999999999999998888653
No 275
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=69.41 E-value=1.5 Score=44.59 Aligned_cols=56 Identities=7% Similarity=0.196 Sum_probs=3.2
Q ss_pred hHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 041588 166 NGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITV 227 (540)
Q Consensus 166 ~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v 227 (540)
-+..++..+++|+..|-..+.......+..++++ |..+-.+..++.++|-.+|..+
T Consensus 248 d~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e------~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 248 DAWFIILMLLFGFTNGYLSTLAMMYAPKSVSPEE------RELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp -------------------HHHH---------------------------------------
T ss_pred hHHHHHHHHHHHHccchhhhceeeeCCCcCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666778899998888777777788777554 4444445555566665555433
No 276
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=66.41 E-value=1.8e+02 Score=30.74 Aligned_cols=178 Identities=11% Similarity=0.025 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccc
Q 041588 41 ASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQG 120 (540)
Q Consensus 41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~ 120 (540)
..+..++.....-..+..+.+.-+-|-.+.-+.+. +......+...+.+..++.-.+--+. . ...
T Consensus 19 v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~~-~------------~~~ 83 (406)
T KOG1479|consen 19 VYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAFL-N------------TRL 83 (406)
T ss_pred HHHHHHHHhcccccchHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHH-H------------HHH
Confidence 44444445555555666666655555544444444 44445555555555555554444433 3 000
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCCh
Q 041588 121 RFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADE 200 (540)
Q Consensus 121 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~ 200 (540)
|+++.........+..+.+.++.. ... ..........++..++.+.+.|..+.......++ +|.+.
T Consensus 84 ~~~~~~~l~~~~il~i~~l~~~~v-~~~-----------~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~y- 149 (406)
T KOG1479|consen 84 RTRVGYLLSLIAILFIVTLDLALV-KTD-----------TWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEY- 149 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-ccC-----------CccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHH-
Confidence 444333333333333333333210 000 0112234455566667788888888877776654 56654
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHH---Hhhh--hccCcchhhhHhHHHHHHHHHHHH
Q 041588 201 KEAIQKYVFFNWFFFAINMGAIFGITVL---VYIQ--EQKGWSVGFGIPTAFTICSIIIVA 256 (540)
Q Consensus 201 ~~~~~r~~~~~~~~~~~~iG~~i~p~v~---~~l~--~~~g~~~~f~i~~~~~~~~~i~~~ 256 (540)
-.. .-.+.+++|.+...+. -... +..+=..-|.++.+..+++.+.+.
T Consensus 150 -----tqa----vm~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~~~~llC~i~y~ 201 (406)
T KOG1479|consen 150 -----TQA----VMSGQALAGTLTSLLRILTKAAFSDSRTSALIYFITSTVILLLCFVLYL 201 (406)
T ss_pred -----HHH----HHhcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHHHHHHHHHHHHH
Confidence 112 2223344444332221 1111 123334455556666666666665
No 277
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=64.43 E-value=8.2 Score=40.07 Aligned_cols=81 Identities=21% Similarity=0.087 Sum_probs=57.9
Q ss_pred HHHHHHhhhhHHHHHhhhccc---cchhhHhHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccCcCCCCchhHHHHHHHH
Q 041588 444 SAEVFTYVGQLEFFYNEATDG---TRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDLNMSKLDYFYWILA 520 (540)
Q Consensus 444 ~~e~~~~~~~~~~~~~~aP~~---~r~~~~~~~~~~~~ig~~l~~~l~~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~la 520 (540)
+|..+.=|....+..||-+++ .|..+...++....+|+.++..+...+.+- .+ +...|++.+
T Consensus 45 ~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~-----~~----------~~~~f~i~~ 109 (372)
T PF00854_consen 45 VGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQN-----YG----------WFLGFGIPA 109 (372)
T ss_dssp HHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC-----S-----------HHHHHHHHH
T ss_pred hccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccc-----cc----------hhhhhhHHH
Confidence 777888888888888888876 344555667778888888887776666521 13 346788888
Q ss_pred HHHHHHHHHHHHHhhcccC
Q 041588 521 GINGLNFFVYFWVAWRYKG 539 (540)
Q Consensus 521 ~l~~~~~~~y~~~~~~~~~ 539 (540)
+..+++++.|+.-.++|++
T Consensus 110 ~~~~~~~~~f~~~~~~y~~ 128 (372)
T PF00854_consen 110 IGMLLALIVFLSGRKRYRK 128 (372)
T ss_dssp HHHHHHHHHHHCCCCTT--
T ss_pred HHHHHHHHHHHhCCcCCcC
Confidence 8888888887776666654
No 278
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=62.86 E-value=2.3e+02 Score=30.81 Aligned_cols=67 Identities=13% Similarity=0.124 Sum_probs=46.1
Q ss_pred HHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHH
Q 041588 176 IALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAF 247 (540)
Q Consensus 176 ~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~ 247 (540)
.++..-.....--..+.+++|+.++ ...++|-+....++-..+-..+++.+.+..||..+..+.-++
T Consensus 292 Ygi~inLvE~~wK~~lk~~~~~~~~-----ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv 358 (491)
T PF03219_consen 292 YGISINLVEVVWKSQLKQLYPDPND-----YSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIV 358 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHH
Confidence 3344434445555666778876652 677888877777777777777888999999999887774333
No 279
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=61.71 E-value=2.3e+02 Score=30.32 Aligned_cols=33 Identities=6% Similarity=0.054 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588 165 QNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA 198 (540)
Q Consensus 165 ~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~ 198 (540)
.....++..++.|++.+..+....++.+ .+|++
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~ 137 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPST 137 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH
Confidence 4555666667788888888888888765 67754
No 280
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=56.64 E-value=3e+02 Score=30.02 Aligned_cols=166 Identities=13% Similarity=0.069 Sum_probs=85.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCC---ChhHHHHHHHH-HHHHHHHHHHHHHHHhhhhcCCCcchhhhh
Q 041588 39 WKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQ---SLPTAGTHVTD-WIGAAYVLTILGAFLADAYLGQPALKHVHA 114 (540)
Q Consensus 39 ~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~---s~~~a~~~~~~-~~~~~~~~~~~gG~laD~~~G~~~~~~~~~ 114 (540)
++.++.+.+..++..+.|..+.. +.|.+=. +.+....+-.. ..-.+.+..++-.++++++ +
T Consensus 23 ~~k~~~l~~m~f~i~f~y~~lR~-----~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s--------- 87 (491)
T PF03219_consen 23 LKKFLPLALMFFFILFNYTILRD-----LKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-S--------- 87 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----hcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C---------
Confidence 46667777766666555543221 2222111 22222222221 2224556677889999998 9
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHhcc--cCCCCCCCC-CC-CCCccCC---------CchhHHHHHHHHHHHHhcC
Q 041588 115 IFKLQGRFRTLVVFSCIYSVGMVLLTVSGS--LDSLRPPAC-KE-RPCVEVN---------GGQNGFLLCALGLIALGTR 181 (540)
Q Consensus 115 ~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~--~~~~~~~~~-~~-~~~~~~~---------~~~~~~~~~~~~l~~~g~g 181 (540)
|.++.-+....+...+.+.++.-. -..++|.+- .. ....++. ......+++..=+.| .-
T Consensus 88 ------~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwg--sv 159 (491)
T PF03219_consen 88 ------REKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWG--SV 159 (491)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 888887766665555555544321 122333211 00 0000000 001111111111111 00
Q ss_pred CCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 041588 182 DIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQE 233 (540)
Q Consensus 182 ~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~ 233 (540)
...-.-+++..|.++.++ -.++++++..+.|+|.+++..+..++.+
T Consensus 160 vlSlLFW~fAN~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 160 VLSLLFWGFANEITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011134677778877765 6789999999999999999988888876
No 281
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=56.60 E-value=45 Score=30.04 Aligned_cols=84 Identities=20% Similarity=0.220 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCCh
Q 041588 121 RFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADE 200 (540)
Q Consensus 121 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~ 200 (540)
.||+.+..++-.++|+..+.....+-... ...-.....++...+++|+|.-+ ..+.+++--.+++.
T Consensus 62 ~rRm~~~~GiP~~lG~~~f~~~y~l~~~~----------~~dvP~~~~~~~S~~~Fg~gllG---isYGilSaSWD~~r- 127 (153)
T PF11947_consen 62 LRRMAVFVGIPTALGVAVFVVFYYLKSRQ----------IVDVPPWAVLLVSLVFFGLGLLG---ISYGILSASWDPER- 127 (153)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHHHHhcc----------ccccCchHHHHHHHHHHHHHHHh---hhhhhcccccCCCC-
Confidence 66666666665555555554432211100 00112234444455555544332 23444444556665
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHH
Q 041588 201 KEAIQKYVFFNWFFFAINMGAIF 223 (540)
Q Consensus 201 ~~~~~r~~~~~~~~~~~~iG~~i 223 (540)
.|+++||-.+-.|++-+.
T Consensus 128 -----~GSllG~~e~~~N~~r~~ 145 (153)
T PF11947_consen 128 -----EGSLLGWEEFKRNWGRMW 145 (153)
T ss_pred -----CCCcccHHHHHHhHHHHH
Confidence 689999999999987654
No 282
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=56.47 E-value=25 Score=39.05 Aligned_cols=68 Identities=15% Similarity=0.056 Sum_probs=55.9
Q ss_pred CCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 041588 162 NGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQK 235 (540)
Q Consensus 162 ~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~ 235 (540)
+..+..+++--.+++|++.........-+.=+|+|++. |+.+.+++.....+|..++..+...+....
T Consensus 454 ~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sM------kS~~~al~l~t~a~G~~lss~Lv~~v~~~t 521 (571)
T KOG1237|consen 454 NPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESM------KSVATALWLLTVAVGNYLSSVLVSLVQFST 521 (571)
T ss_pred CCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566777777888999998877777777778999988 999999999999999999988887665554
No 283
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.67 E-value=93 Score=33.90 Aligned_cols=32 Identities=9% Similarity=0.162 Sum_probs=26.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 041588 73 QSLPTAGTHVTDWIGAAYVLTILGAFLADAYL 104 (540)
Q Consensus 73 ~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~ 104 (540)
++++.=|.+.+.......++.+++|+.|-|..
T Consensus 356 lSPs~RGsLmT~~~~l~v~~G~~agY~s~rly 387 (628)
T KOG1278|consen 356 LSPSSRGSLMTAMVLLFVFMGFVAGYVSARLY 387 (628)
T ss_pred CCccccccHHHHHHHHHHHHHHhhhhhhhhhH
Confidence 36666677788888888899999999999873
No 284
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=54.54 E-value=2.7e+02 Score=28.89 Aligned_cols=52 Identities=17% Similarity=0.123 Sum_probs=31.7
Q ss_pred HHHHhcCCCccchhhhhhccCCCCChH-HHHhhhhhHHHHHHHHHHHHHHHHH
Q 041588 175 LIALGTRDIKPCVSSFGADQYDEADEK-EAIQKYVFFNWFFFAINMGAIFGIT 226 (540)
Q Consensus 175 l~~~g~g~~~~~~~~~~~d~~~~~~~~-~~~~r~~~~~~~~~~~~iG~~i~p~ 226 (540)
++|+.++++..++..++--+.|.-+++ +...-|..|+.+..+..+|+.+.+.
T Consensus 248 ~LG~~qslFE~smy~FVflWtPaL~~~~~~~P~GlIFssFM~a~MlGS~lf~~ 300 (354)
T PF05631_consen 248 LLGLIQSLFEGSMYLFVFLWTPALDPDDEELPLGLIFSSFMVAMMLGSSLFSR 300 (354)
T ss_pred HHHHHHHHHHHHHHHheeeeeceecCCCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 466666677777777766655533211 1112567777777788888776643
No 285
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=52.13 E-value=2.1e+02 Score=31.26 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=38.4
Q ss_pred HHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 041588 175 LIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQK 235 (540)
Q Consensus 175 l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~ 235 (540)
+..+..-....++.++-++.-++.. -|+.+.+.|...|+|+-.-..+.-++.|..
T Consensus 414 l~sf~stvmFVai~AFharISDP~I------GGTYMTLLNTvSNLGGtWP~~~vL~lVD~f 468 (544)
T PF13000_consen 414 LSSFMSTVMFVAIMAFHARISDPAI------GGTYMTLLNTVSNLGGTWPRTFVLWLVDYF 468 (544)
T ss_pred HHHHHHHHHHHHHHHHHhhccCccc------chHHHHHHHHHHhcCCCchHHHHHHHhhhc
Confidence 3334444455677788888888877 689999999999999865555555555543
No 286
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=51.94 E-value=1e+02 Score=32.65 Aligned_cols=27 Identities=7% Similarity=0.124 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 041588 78 AGTHVTDWIGAAYVLTILGAFLADAYLG 105 (540)
Q Consensus 78 a~~~~~~~~~~~~~~~~~gG~laD~~~G 105 (540)
-|.+-.+..+.+.++.+..|++..++ .
T Consensus 287 NG~VeA~~tllgA~~al~~g~v~~~w-~ 313 (412)
T PF01770_consen 287 NGAVEAASTLLGAIAALLAGYVKVNW-D 313 (412)
T ss_pred chHHHHHHHHHHHHHHHHHhHhhcch-H
Confidence 46777777888888999999996665 6
No 287
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.20 E-value=85 Score=26.41 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=18.2
Q ss_pred HHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHH
Q 041588 94 ILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSV 134 (540)
Q Consensus 94 ~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~ 134 (540)
..-||+-|++.| -.+.-+|...+...
T Consensus 60 a~iG~llD~~ag---------------TsPwglIv~lllGf 85 (116)
T COG5336 60 AGIGWLLDKFAG---------------TSPWGLIVFLLLGF 85 (116)
T ss_pred HHHHHHHHHhcC---------------CCcHHHHHHHHHHH
Confidence 356899999999 77766665544333
No 288
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=46.16 E-value=22 Score=35.08 Aligned_cols=46 Identities=7% Similarity=-0.042 Sum_probs=37.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHH
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDW 85 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~ 85 (540)
-.++.+.+..++.|.--.....+++.|..++++++.+.-+++-.+.
T Consensus 201 v~~YQiAllYmLsRL~iNiSQaYlaFfviddlqm~qsakAllP~v~ 246 (412)
T KOG4830|consen 201 VQFYQIALLYMLSRLYINISQAYLAFFVIDDLQMEQSAKALLPMVA 246 (412)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhheeeEEeehhhHHHHHhhhhHHHH
Confidence 4667788889999998888899999999999998887665554433
No 289
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=43.10 E-value=64 Score=34.00 Aligned_cols=34 Identities=12% Similarity=0.400 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 166 NGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 166 ~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
-+.++....++|+..|=...+...+..++.++++
T Consensus 343 ~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e 376 (406)
T KOG1479|consen 343 DGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSE 376 (406)
T ss_pred chHHHHHHHHHHhccchHhhheehhcCCCCChHH
Confidence 4556666778889888777777777788877665
No 290
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=38.51 E-value=1.5e+02 Score=21.34 Aligned_cols=20 Identities=15% Similarity=0.448 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhhhhcC
Q 041588 86 IGAAYVLTILGAFLADAYLG 105 (540)
Q Consensus 86 ~~~~~~~~~~gG~laD~~~G 105 (540)
.....+.....|+..|+.+|
T Consensus 10 ~~~~i~~g~~~G~~lD~~~~ 29 (55)
T PF09527_consen 10 MAAPILVGFFLGYWLDKWFG 29 (55)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 34455566678888999989
No 291
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=34.02 E-value=5.7e+02 Score=26.71 Aligned_cols=112 Identities=16% Similarity=-0.057 Sum_probs=53.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC
Q 041588 74 SLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPAC 153 (540)
Q Consensus 74 s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 153 (540)
+...-..+..++...+.+.| -|++++ +|--+-....+..+..+..++....|....|..
T Consensus 213 ~~~~W~~ii~~Y~~iAs~lP------Vw~Llq---------------prdyl~~~~L~~~~~~~~igli~~~~~i~~p~~ 271 (376)
T PF02554_consen 213 SVTTWIIIIFIYYFIASVLP------VWKLLQ---------------PRDYLNGFLLIGMLIGLVIGLIIGGPTIQMPAF 271 (376)
T ss_pred cHHHHHHHHHHHHHHHHHhh------HHHHhC---------------chHHHHHHHHHHHHHHHHHheeecCCCcCcchh
Confidence 33344444444544444444 488888 776666655554444444444433344444433
Q ss_pred CCC--CCccC-CCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhH
Q 041588 154 KER--PCVEV-NGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFF 210 (540)
Q Consensus 154 ~~~--~~~~~-~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~ 210 (540)
.+. +.+++ .....+-++.-.+-.|.-.|.+.-..+...++|.++|.+. |..++
T Consensus 272 ~~~~~~~~~p~~~~pl~P~LFITIACGAiSGFHsLv~SgttsKql~~E~d~----r~VgY 327 (376)
T PF02554_consen 272 TSFAVNGNGPAGGGPLFPFLFITIACGAISGFHSLVSSGTTSKQLDKEKDA----RPVGY 327 (376)
T ss_pred hhhhhhccCCCcCCCCHHHHHHHHHhhhhcchhhhhcCCCcHhhHhccccc----ceeeh
Confidence 331 11222 2222222222222233334444447777788888776533 55554
No 292
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.27 E-value=1.4e+02 Score=24.44 Aligned_cols=50 Identities=22% Similarity=0.406 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCccccc
Q 041588 212 WFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRY 264 (540)
Q Consensus 212 ~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~~ 264 (540)
++.....+|+++|- +.|+.+++.+|. .|. ..+..++.+++.+--.|.|+.
T Consensus 27 ~~q~ilti~aiVg~-i~Gf~~Qqls~t-vy~-vg~~~v~t~li~LPpwP~y~r 76 (101)
T KOG4112|consen 27 FQQLILTIGAIVGF-IYGFAQQQLSVT-VYI-VGAGFVFTLLITLPPWPWYRR 76 (101)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHH-HHH-HHHHHHHHHHhcCCCchhhhc
Confidence 66777888888775 456777777765 332 233334444444433444443
No 293
>PHA02688 ORF059 IMV protein VP55; Provisional
Probab=28.95 E-value=1.5e+02 Score=30.00 Aligned_cols=52 Identities=25% Similarity=0.253 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHH
Q 041588 89 AYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTV 141 (540)
Q Consensus 89 ~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~ 141 (540)
..+..-+++|+|+|+ -..-+.-+|--||+.|+.-+-+++.++.++..+++.+
T Consensus 253 ~~lwsrl~~Wla~~~-P~~~y~lttPLfSfFGlfDInv~gviiil~ii~l~IF 304 (323)
T PHA02688 253 NSLWSRLGTWLAKRY-PGFYYFLTTPLFSFFGLFDINVIGVIIILFIIVLLIF 304 (323)
T ss_pred hhHHHHHHHHHHhhC-CchheeecchHHHhhccchhHHHHHHHHHHHHHHHHh
Confidence 346688999999998 4333444555799999999888888765554444443
No 294
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=28.88 E-value=2.5e+02 Score=25.05 Aligned_cols=35 Identities=20% Similarity=-0.061 Sum_probs=21.1
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 041588 70 EMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLG 105 (540)
Q Consensus 70 ~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G 105 (540)
++|++.........+.++.-.++-+++++++|+. +
T Consensus 66 eiGi~EkslL~sA~LvYi~PL~~l~v~~~La~~L-~ 100 (150)
T COG3086 66 ELGIEEKSLLKSALLVYIFPLVGLFLGAILAQYL-F 100 (150)
T ss_pred EEccCcccHHHHHHHHHHHHHHHHHHHHHHHHHH-h
Confidence 3555555444444445555566667778888886 6
No 295
>PRK10263 DNA translocase FtsK; Provisional
Probab=28.83 E-value=2.2e+02 Score=34.75 Aligned_cols=34 Identities=15% Similarity=0.023 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHH
Q 041588 219 MGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSI 252 (540)
Q Consensus 219 iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~ 252 (540)
.||++|-.+...+...+|.....++..++.++++
T Consensus 142 gGGIIG~lLs~lL~~LfG~vGa~LILLlllLIGL 175 (1355)
T PRK10263 142 SGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGL 175 (1355)
T ss_pred ccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4677777777666666665444444444333333
No 296
>PF03213 Pox_P35: Poxvirus P35 protein; InterPro: IPR004900 The Poxvirus P35 protein is an immunodominant envelope protein. It binds to heparan sulphate on the cell surface to provide virion attachment to target cell [].; GO: 0019031 viral envelope
Probab=28.45 E-value=1.6e+02 Score=29.73 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHH
Q 041588 89 AYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTV 141 (540)
Q Consensus 89 ~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~ 141 (540)
..+..-+|.|+|+|+ -..-+.-+|--||+.|+.-+-+++.++.+...+++.+
T Consensus 255 ~~~wsrl~~Wla~~~-P~~~y~lttPLfSfFGlfDInv~g~~iil~ii~l~iF 306 (325)
T PF03213_consen 255 NSIWSRLGKWLAKRF-PGAYYFLTTPLFSFFGLFDINVIGVIIILFIIILVIF 306 (325)
T ss_pred hhHHHHHHHHHHhhC-CCchhhhhchHHHHcccchhHHHHHHHHHHHHHHHHh
Confidence 456688999999998 4333444555799999999988888765555444443
No 297
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=27.92 E-value=2.9e+02 Score=30.26 Aligned_cols=32 Identities=13% Similarity=0.129 Sum_probs=23.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 041588 74 SLPTAGTHVTDWIGAAYVLTILGAFLADAYLG 105 (540)
Q Consensus 74 s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G 105 (540)
+...-|.+.+...+...++.+++|+.|-|...
T Consensus 291 ~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk 322 (521)
T PF02990_consen 291 SPNNRGSLLTAAIILYALTSFIAGYVSARLYK 322 (521)
T ss_pred cccCcchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44445667777777888888999999888743
No 298
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=27.37 E-value=1.4e+02 Score=23.35 Aligned_cols=49 Identities=22% Similarity=0.466 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCcccc
Q 041588 212 WFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYR 263 (540)
Q Consensus 212 ~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~ 263 (540)
+++....++++++ .+.||+.+. .+..+++.++..+++++++.--.|.|+
T Consensus 12 l~~~il~~~~iis-fi~Gy~~q~--~~~~~~~~~~g~~~~~lv~vP~Wp~y~ 60 (76)
T PF06645_consen 12 LMQYILIISAIIS-FIVGYITQS--FSYTFYIYGAGVVLTLLVVVPPWPFYN 60 (76)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHhheeCCcHhhc
Confidence 4555666666665 456777764 466777767776666666554444443
No 299
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=25.11 E-value=3.9e+02 Score=28.38 Aligned_cols=49 Identities=16% Similarity=0.096 Sum_probs=38.0
Q ss_pred cchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcch
Q 041588 185 PCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSV 239 (540)
Q Consensus 185 ~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~ 239 (540)
-...++.++.-|+.- -++.+++.+.-.|+|+-.-.+++.+++|..++.-
T Consensus 388 v~~maf~aqisdp~i------ggTymTlLNTLsnLGg~wp~tv~l~l~D~ltv~~ 436 (510)
T KOG3574|consen 388 VSGMAFHAQISDPAI------GGTYMTLLNTLSNLGGNWPGTVALWLADGLTVKQ 436 (510)
T ss_pred HHHHHHHhhcCCccc------CccHHHHHHHHHHhcCCcHHHHHHHhcccCceee
Confidence 344566667767766 6899999999999999888888888888766553
No 300
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=24.10 E-value=9.6e+02 Score=26.16 Aligned_cols=70 Identities=13% Similarity=0.092 Sum_probs=46.3
Q ss_pred CCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHH-HHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHH
Q 041588 182 DIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMG-AIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVA 256 (540)
Q Consensus 182 ~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG-~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~ 256 (540)
.+...--+-+.+.+|..++ +..+++-+..-.++- ..+...+++-+....||..+-.+.-++++++.++++
T Consensus 300 LvE~~wKs~ik~~~~~~~~-----~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~~~AlitPiv~litg~lFF 370 (509)
T COG3202 300 LVEGVWKSGIKELYPTTNE-----YTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGALITPLVMLITGVLFF 370 (509)
T ss_pred HHHHHHHHhHHHhcCChhH-----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445667776653 566777766555555 555666778888889999988887777666655544
No 301
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=23.83 E-value=5e+02 Score=25.74 Aligned_cols=43 Identities=14% Similarity=0.060 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHH
Q 041588 166 NGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNW 212 (540)
Q Consensus 166 ~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~ 212 (540)
...+++..++.|+..=++++...- ....+++.+|++ .+..||+
T Consensus 204 ~~~f~I~~Fl~G~f~WgiQ~ViL~-lPhEyK~~~pk~---ig~~Fg~ 246 (267)
T PF07672_consen 204 FAFFYIFGFLAGFFLWGIQGVILN-LPHEYKGYNPKK---IGIQFGL 246 (267)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhc-ChhhhcCCCcce---ehhHHHH
Confidence 445555555555443333443332 234455555432 3444444
No 302
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=22.12 E-value=3.3e+02 Score=26.65 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=16.9
Q ss_pred HHhhhccccchhhHhHHHHHhHHHHHHHHH
Q 041588 457 FYNEATDGTRSISTAIFLSEIGLGSCLSNA 486 (540)
Q Consensus 457 ~~~~aP~~~r~~~~~~~~~~~~ig~~l~~~ 486 (540)
..+.-| +.||.+.|+.-...++++.+=..
T Consensus 121 ~~~NFP-~~RG~vvgilk~~~GLSaai~t~ 149 (250)
T PF06813_consen 121 CVRNFP-RSRGTVVGILKGFFGLSAAIFTQ 149 (250)
T ss_pred HHHhCc-cccCceehhhhHHHHhHHHHHHH
Confidence 334446 35777777777666666544333
No 303
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=21.43 E-value=2.4e+02 Score=25.18 Aligned_cols=38 Identities=18% Similarity=0.393 Sum_probs=25.0
Q ss_pred HhhhhccCcchhhhHhHHHHHHHHHHHHhcCccccccC
Q 041588 229 VYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQK 266 (540)
Q Consensus 229 ~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~~~~ 266 (540)
.+-....||.+..++...+.+.+.++++=.+|+|+.+.
T Consensus 53 m~~spy~G~~s~~~ftv~fv~m~~~llfDI~P~YrfED 90 (155)
T PF10777_consen 53 MYYSPYFGLGSVWGFTVFFVVMAAFLLFDIKPRYRFED 90 (155)
T ss_pred HHhcchhhhHHHHHHHHHHHHHHHHHHhhccceeeecc
Confidence 34455667666655555566666677777888888764
No 304
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=21.33 E-value=9.2e+02 Score=27.62 Aligned_cols=43 Identities=14% Similarity=0.255 Sum_probs=28.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcC
Q 041588 119 QGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTR 181 (540)
Q Consensus 119 ~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g 181 (540)
.+|.|-++++.+.+.++.+...+.. ...+.+..++++.+++.+
T Consensus 54 ~~R~~~l~~t~~~f~i~sl~v~ll~--------------------~~p~lf~~~l~~~tf~~~ 96 (704)
T TIGR01666 54 TGRLKNVIFTLICFSIASFSVELLF--------------------GKPWLFAVGLTVSTFGFI 96 (704)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--------------------cCcHHHHHHHHHHHHHHH
Confidence 3388888888888887777766652 234556666666655543
No 305
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=20.67 E-value=8.7e+02 Score=27.79 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=18.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHh
Q 041588 121 RFRTLVVFSCIYSVGMVLLTVS 142 (540)
Q Consensus 121 r~~~i~~~~~~~~~~~~~l~~~ 142 (540)
|.|-++++.+.+.++.+...+.
T Consensus 56 R~~~l~it~~~f~i~sl~v~ll 77 (701)
T TIGR01667 56 RLKNLIITLSCFSIASFLVQLL 77 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999988888887777765
Done!