Query 041588
Match_columns 540
No_of_seqs 309 out of 2424
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 14:43:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041588.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041588hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 100.0 3.2E-28 1.1E-32 262.8 21.4 442 38-538 10-507 (524)
2 4aps_A DI-OR tripeptide H+ sym 99.9 6.7E-26 2.3E-30 242.4 30.2 412 36-537 9-475 (491)
3 1pw4_A Glycerol-3-phosphate tr 99.9 2.9E-20 9.9E-25 195.7 26.9 178 38-260 26-208 (451)
4 3o7q_A L-fucose-proton symport 99.8 4.1E-19 1.4E-23 186.3 29.0 179 37-256 23-227 (438)
5 2gfp_A EMRD, multidrug resista 99.7 6.8E-18 2.3E-22 173.7 14.8 167 43-253 3-169 (375)
6 2cfq_A Lactose permease; trans 99.7 2.1E-16 7.1E-21 165.8 12.2 172 40-249 7-178 (417)
7 4gc0_A D-xylose-proton symport 99.6 8.9E-15 3E-19 155.8 22.2 152 75-251 54-213 (491)
8 1pw4_A Glycerol-3-phosphate tr 99.5 3.9E-13 1.3E-17 141.0 16.8 180 39-258 251-433 (451)
9 3o7q_A L-fucose-proton symport 99.4 5.3E-12 1.8E-16 131.9 18.8 170 39-254 257-428 (438)
10 2cfq_A Lactose permease; trans 99.3 8.4E-12 2.9E-16 130.6 12.8 178 40-260 220-401 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.2 7.3E-11 2.5E-15 125.5 10.2 187 41-262 284-475 (491)
12 4gc0_A D-xylose-proton symport 99.1 6.6E-10 2.3E-14 117.9 16.3 180 45-264 282-468 (491)
13 2gfp_A EMRD, multidrug resista 98.8 9.7E-10 3.3E-14 112.5 1.4 163 40-244 199-362 (375)
14 2xut_A Proton/peptide symporte 97.9 2.3E-06 8E-11 91.3 1.8 122 123-262 374-506 (524)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=3.2e-28 Score=262.81 Aligned_cols=442 Identities=22% Similarity=0.360 Sum_probs=280.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcC------CChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchh
Q 041588 38 GWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMH------QSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKH 111 (540)
Q Consensus 38 ~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg------~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~ 111 (540)
++|.++.+.+..++.++++|++.++++.|+.+++| ++..+++.+.+.+.+...++.+++|+++||++|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g------ 83 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFG------ 83 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSC------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 34667888899999999999999999999999999 999999999999999999999999999999669
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhh
Q 041588 112 VHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFG 191 (540)
Q Consensus 112 ~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~ 191 (540)
||+++.++.++..++.+++.++. .+.+.+++++++.|++.+...++..+++
T Consensus 84 ---------~r~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 134 (524)
T 2xut_A 84 ---------KYNTILWLSLIYCVGHAFLAIFE--------------------HSVQGFYTGLFLIALGSGGIKPLVSSFM 134 (524)
T ss_dssp ---------SHHHHHHHHHHHHHHHHHHHHTS--------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred ---------chHHHHHHHHHHHHHHHHHHHhc--------------------ccHHHHHHHHHHHHHhccccchhHHHHH
Confidence 99999999999999988888762 1467788899999999999999999999
Q ss_pred hccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCccccccCCCCCh
Q 041588 192 ADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQKPIGSS 271 (540)
Q Consensus 192 ~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 271 (540)
+|++|+++.+ ++...+++++.+.++|..++|.+++++.+..||++.|++.++..+++.++++...++.+..+|++++
T Consensus 135 ~~~~~~~~r~---~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (524)
T 2xut_A 135 GDQFDQSNKS---LAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKD 211 (524)
T ss_dssp HHTCSTTTTT---HHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-----
T ss_pred HHHcCccchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcc
Confidence 9999987611 1244567799999999999999999999989999999988887777766665555554444444333
Q ss_pred HHHHHHHHHHHHHhhccCccccCccchhhhccccccccccccccCCCch---------hhhhhhhhccCccccccccc--
Q 041588 272 LTRFVQVIVSYVRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHSSQF---------RFLDKAAVITDPETVRKDRW-- 340 (540)
Q Consensus 272 l~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ld~a~~~~~~~~~~~~~~-- 340 (540)
..+..+.+..+.|++....+ +.....+......... ...+.+.. .+....+. .+++|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 279 (524)
T 2xut_A 212 PHGFLPVIRSALLTKVEGKG--NIGLVLALIGGVSAAY---ALVNIPTLGIVAGLCCAMVLVMGFV-------GAGASLQ 279 (524)
T ss_dssp ---------------CTTHH--HHHHHHHHHHHHHHHH---TGGGTTTTCSSHHHHHHHHHHHHHH-------HTGGGTH
T ss_pred chhHHHHHHHHHhhhhcccC--ccchhhhhhhhhhhhh---hhcccchhhhhhhhhhhhhhhhccc-------ccchhhH
Confidence 22333333333332211000 0000000000000000 00000000 00000000 00111
Q ss_pred -----ccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhccCCCCCceecCCCccchhHHHHHHHHHhh
Q 041588 341 -----RLCTLTQVEELKSFIRILPIWASTLDLAISFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIY 415 (540)
Q Consensus 341 -----~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~s~~~~q~~~~~~~~~~g~~i~~~~~~~~n~i~iii~~p~~ 415 (540)
+.++..+.++.|+.+..+++++....++..+.|..+.+..+...++.. .+ ++.+.+..++.+..++..|+.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~ 355 (524)
T 2xut_A 280 LERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP---QW-FEPAMMQALNPLLVMLLIPFN 355 (524)
T ss_dssp HHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCC---SS-SCHHHHHTTSGGGHHHHGGGT
T ss_pred HhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCC---ee-ecHHHHHHHHHHHHHHhHHHH
Confidence 011122234456666677788888888888888888777776555432 11 355667788888899999999
Q ss_pred hhhHHhHhhhhcCCCC----c-----------------ccc---cc-hhHHHH--------HHHHHHhhhhHHHHHhhhc
Q 041588 416 EKVIVPILRKLTGQTQ----C-----------------DVK---TI-LSHLWH--------SAEVFTYVGQLEFFYNEAT 462 (540)
Q Consensus 416 ~~~~~p~~~r~~~~~~----l-----------------~~~---~~-~s~~~~--------~~e~~~~~~~~~~~~~~aP 462 (540)
+++..|..+|+..+.. + +.. +. .+.+|. +++.+..+..++...+.+|
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p 435 (524)
T 2xut_A 356 NFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAP 435 (524)
T ss_dssp TTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCC
T ss_pred HhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9987776666532211 0 000 00 111222 8888899999999999999
Q ss_pred cccchhhHhHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccCc-CCCCchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 041588 463 DGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRN-DLNMSKLDYFYWILAGINGLNFFVYFWVAWRYK 538 (540)
Q Consensus 463 ~~~r~~~~~~~~~~~~ig~~l~~~l~~~~~~~~~~~~~~w~~~-~~n~~~~~~~f~~la~l~~~~~~~y~~~~~~~~ 538 (540)
++.||.++|+++....+|+.+++.+.+.+...+ ..+|.++ +++.+ .+.|++.+++++++.++++++.++++
T Consensus 436 ~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (524)
T 2xut_A 436 KAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPT---VTEQIVQTGMSVT--AFQMFFFAGFAILAAIVFALYARSYQ 507 (524)
T ss_dssp TTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCH---HHHHHHHHHSCHH--HHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccc---ccccccccccccc--ccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999988765321 1135432 12211 23378888888888877777666654
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.95 E-value=6.7e-26 Score=242.38 Aligned_cols=412 Identities=17% Similarity=0.196 Sum_probs=278.6
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHh-----cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhh-hcCCCcc
Q 041588 36 TGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVRE-----MHQSLPTAGTHVTDWIGAAYVLTILGAFLADA-YLGQPAL 109 (540)
Q Consensus 36 ~~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~-----lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~-~~G~~~~ 109 (540)
++++|.++.+.+..+++++++|++.++++.|+.++ +|++..+.+.+.+.+.++..++.+++|+++|| + |
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g---- 83 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-G---- 83 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-C----
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-c----
Confidence 34567889999999999999999999999999998 99999999999999999999999999999999 7 9
Q ss_pred hhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhh
Q 041588 110 KHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSS 189 (540)
Q Consensus 110 ~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~ 189 (540)
||+++.++.++..++.++++++ .+...+++++++.|+|.+...++..+
T Consensus 84 -----------~r~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~ 131 (491)
T 4aps_A 84 -----------ARPAVFWGGVLIMLGHIVLALP---------------------FGASALFGSIILIIIGTGFLKPNVST 131 (491)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHSC---------------------CSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------chHHHHHHHHHHHHHHHHHHHh---------------------hhHHHHHHHHHHHHHHHHhccchHHH
Confidence 9999999999999998888765 24667888999999999999999999
Q ss_pred hhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCcccccc---C
Q 041588 190 FGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQ---K 266 (540)
Q Consensus 190 ~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~~~---~ 266 (540)
+++|++|+++.+ |+.++++++.+.++|..++|.+++++.+..||++.|++.++..++++++++...+++... +
T Consensus 132 ~~~~~~~~~~~~----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (491)
T 4aps_A 132 LVGTLYDEHDRR----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLR 207 (491)
T ss_dssp HHHHHSSSCTTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSC
T ss_pred HHHHHcCccccc----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccC
Confidence 999999987633 778899999999999999999999999999999999998777777766665544433221 1
Q ss_pred CCC-ChHHHHHHHHHH--------------HHHhhccCccccCccchhhhccccccccccccccCCCchhhhhhhhhccC
Q 041588 267 PIG-SSLTRFVQVIVS--------------YVRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHSSQFRFLDKAAVITD 331 (540)
Q Consensus 267 ~~~-~~l~~~~~v~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~ 331 (540)
|+. ....+..+.... ...... . +.+.... .. ...........
T Consensus 208 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~--~---~~~~~~~-------------~~-----~~~~~~~~~~~ 264 (491)
T 4aps_A 208 PTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGW--N---SLPAYIN-------------LL-----TIVAIAIPVFY 264 (491)
T ss_dssp CSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSS--C---CTTHHHH-------------HH-----HHHHHHHHHHH
T ss_pred CCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccC--c---ccccchh-------------hh-----hHHHHHHHHHH
Confidence 111 111111110000 000000 0 0000000 00 00000000000
Q ss_pred cccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHh-hccCCCCCceecCCCccchhHHHHHH
Q 041588 332 PETVRKDRWRLCTLTQVEELKSFIRILPIWASTLDLAISFAQLSTFFLSQAAV-MDRNLGSNFTIPTGCVPIFSAINALI 410 (540)
Q Consensus 332 ~~~~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~s~~~~q~~~-~~~~~~~g~~i~~~~~~~~n~i~iii 410 (540)
....|+.. .....++++..+.+++++....++..+.+..+.+..+..+ .+.. ..+.+.+..++.+..++
T Consensus 265 ----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 334 (491)
T 4aps_A 265 ----FAWMISSV-KVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS-----WFPVSWFQSLNPLFIML 334 (491)
T ss_dssp ----HHHHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS-----SSCSGGGTTHHHHHHHH
T ss_pred ----HHHHhhcc-cccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC-----ccCHHHHhccchHHHHH
Confidence 00001100 0112344555567788888888899998888876655432 2211 15567888899999999
Q ss_pred HHHhhhhhHHhHhhhhcCCCC-c--------------cc-----c-cc-hhHHHH--------HHHHHHhhhhHHHHHhh
Q 041588 411 LVPIYEKVIVPILRKLTGQTQ-C--------------DV-----K-TI-LSHLWH--------SAEVFTYVGQLEFFYNE 460 (540)
Q Consensus 411 ~~p~~~~~~~p~~~r~~~~~~-l--------------~~-----~-~~-~s~~~~--------~~e~~~~~~~~~~~~~~ 460 (540)
..++.+++.+++.||...... + .. . .. .+.+|. +++.+..+..+++..+.
T Consensus 335 ~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 414 (491)
T 4aps_A 335 YTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKL 414 (491)
T ss_dssp HHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 999999987766555322211 0 00 0 00 011222 77778888999999999
Q ss_pred hccccchhhHhHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccCcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 041588 461 ATDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDLNMSKLDYFYWILAGINGLNFFVYFWVAWRY 537 (540)
Q Consensus 461 aP~~~r~~~~~~~~~~~~ig~~l~~~l~~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~la~l~~~~~~~y~~~~~~~ 537 (540)
+|++.||.++|++.....+|+.+++.+.+.+.. .+....|+++++++++..++.+.+.++.
T Consensus 415 ~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 415 APKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA----------------KSEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp TTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG----------------SSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888655431 1234677888888877776665555443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.87 E-value=2.9e-20 Score=195.69 Aligned_cols=178 Identities=12% Similarity=0.008 Sum_probs=150.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhh
Q 041588 38 GWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFK 117 (540)
Q Consensus 38 ~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~ 117 (540)
+++.++.+.+..+......+.+...++.+. +++ .+..+.+.+.+.+.++..++.+++|+++||+ |
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g------------ 90 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-N------------ 90 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-C------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-C------------
Confidence 345566666677777777666677776655 456 9999999999999999999999999999998 9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHH----hcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhc
Q 041588 118 LQGRFRTLVVFSCIYSVGMVLLTV----SGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGAD 193 (540)
Q Consensus 118 ~~~r~~~i~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d 193 (540)
||++++++.++..++.+++++ + .+.+.+++++++.|++.+...++..++++|
T Consensus 91 ---~r~~l~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~ 146 (451)
T 1pw4_A 91 ---PRVFLPAGLILAAAVMLFMGFVPWAT---------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVH 146 (451)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHCHHHH---------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHT
T ss_pred ---chHHHHHHHHHHHHHHHHHHhhhhcc---------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHH
Confidence 999999999999999999887 5 245678889999999999999999999999
Q ss_pred cCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC-cchhhhHhHHHHHHHHHHHHhcCc
Q 041588 194 QYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG-WSVGFGIPTAFTICSIIIVAAGFP 260 (540)
Q Consensus 194 ~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g-~~~~f~i~~~~~~~~~i~~~~~~~ 260 (540)
.+|+++ |+..+++++.+.++|..++|.+++++.+..| |++.|++.++..++..++.+...+
T Consensus 147 ~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~ 208 (451)
T 1pw4_A 147 WWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMR 208 (451)
T ss_dssp TCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred HCCchh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999876 9999999999999999999999999888888 999999888776665555444433
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.85 E-value=4.1e-19 Score=186.33 Aligned_cols=179 Identities=12% Similarity=0.064 Sum_probs=146.8
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhh
Q 041588 37 GGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIF 116 (540)
Q Consensus 37 ~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~ 116 (540)
.+++.+..+.+..+...+.++...+.+|. +.+++|.+..+.+++.+.+.++..++.+++|+++||+ |
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g----------- 89 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-S----------- 89 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-C-----------
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-c-----------
Confidence 34455556666666666666666666555 6778999999999999999999999999999999998 9
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588 117 KLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD 196 (540)
Q Consensus 117 ~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~ 196 (540)
||++++++.++..++.++....... .+.+.+++++++.|++.+...+...++++|.+|
T Consensus 90 ----~r~~l~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~ 147 (438)
T 3o7q_A 90 ----YKAGIITGLFLYALGAALFWPAAEI------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGP 147 (438)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHT------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred ----chHHHHHHHHHHHHHHHHHHhcccc------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcC
Confidence 9999999999999999888332111 357888999999999999999999999999999
Q ss_pred CCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhh-hccC-------------------------cchhhhHhHHHHHH
Q 041588 197 EADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQ-EQKG-------------------------WSVGFGIPTAFTIC 250 (540)
Q Consensus 197 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~-~~~g-------------------------~~~~f~i~~~~~~~ 250 (540)
+++ |+..+++++.+.++|..++|.+++++. +..+ |++.|++.++..++
T Consensus 148 ~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 221 (438)
T 3o7q_A 148 ESS------GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLL 221 (438)
T ss_dssp STT------HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 887 899999999999999999999999988 5554 89999776665554
Q ss_pred HHHHHH
Q 041588 251 SIIIVA 256 (540)
Q Consensus 251 ~~i~~~ 256 (540)
..++++
T Consensus 222 ~~~~~~ 227 (438)
T 3o7q_A 222 VALLIM 227 (438)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.75 E-value=6.8e-18 Score=173.69 Aligned_cols=167 Identities=10% Similarity=0.105 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccch
Q 041588 43 PFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRF 122 (540)
Q Consensus 43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~ 122 (540)
+.+.+..++.........+.++.+ .+++|.+..+.+.+.+.+.....++.+++|+++||+ | ||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g---------------~r 65 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-G---------------RR 65 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-C---------------CC
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C---------------Cc
Confidence 445566677777777777777765 567999999999999999999999999999999998 9 99
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHH
Q 041588 123 RTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKE 202 (540)
Q Consensus 123 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~ 202 (540)
++++++.++..++.+++..+ .+...+++++++.|++.+...+...++..|.+|+++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--- 121 (375)
T 2gfp_A 66 PVILVGMSIFMLATLVAVTT---------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ--- 121 (375)
T ss_dssp CCCHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS---
T ss_pred hhHHHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH---
Confidence 99999999999999888876 357788889999999999999999999999998877
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHH
Q 041588 203 AIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSII 253 (540)
Q Consensus 203 ~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i 253 (540)
|+..+++++.+.++|..++|.+++++.+..||+..|++.++..++..+
T Consensus 122 ---~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 122 ---LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888999999877666555444
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.66 E-value=2.1e-16 Score=165.79 Aligned_cols=172 Identities=9% Similarity=-0.118 Sum_probs=116.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
|.++.+....++...++..+.++++.|+++++|++..+++.+.+.+.++..++.+++|+++||+ |
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-G-------------- 71 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-G-------------- 71 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-T--------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c--------------
Confidence 5667777777777778888889999999999999999999999999999999999999999998 9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD 199 (540)
Q Consensus 120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~ 199 (540)
|||+++++..++.++...+......+. ....++.++.+.+++.|...+...+...+..++..
T Consensus 72 -rr~~l~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 133 (417)
T 2cfq_A 72 -LRKYLLWIITGMLVMFAPFFIFIFGPL-----------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS 133 (417)
T ss_dssp -TCCHHHHHHHHTTSCHHHHHHHTHHHH-----------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 999999988776543221111100000 00001223333333333333333333333332211
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHH
Q 041588 200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTI 249 (540)
Q Consensus 200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~ 249 (540)
++++..++..+...++|..++|.+++++.+ .+|+..|++.++..+
T Consensus 134 ----~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~ 178 (417)
T 2cfq_A 134 ----RRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCAL 178 (417)
T ss_dssp ----HHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTT
T ss_pred ----hhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHH
Confidence 125666777777889999999999999887 589999987665533
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.64 E-value=8.9e-15 Score=155.79 Aligned_cols=152 Identities=14% Similarity=0.080 Sum_probs=112.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCC
Q 041588 75 LPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACK 154 (540)
Q Consensus 75 ~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 154 (540)
....+++.+.+.++..++++++|+++||+ | ||++++++.+++.++.++.+.+........+...
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-G---------------Rk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~ 117 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-G---------------RRDSLKIAAVLFFISGVGSAWPELGFTSINPDNT 117 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-C---------------HHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---------------CHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhH
Confidence 34567888889999999999999999998 9 9999999999999999988854211000000000
Q ss_pred CCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 041588 155 ERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQ 234 (540)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~ 234 (540)
. ...-..+...++++|++.|+|.|+..+..+.+++|..|++. |+...++++.+..+|.++++.++..+...
T Consensus 118 ~---~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~ 188 (491)
T 4gc0_A 118 V---PVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARS 188 (491)
T ss_dssp C---CGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred H---HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccc
Confidence 0 00012467889999999999999999999999999999987 89999999999999999888887666543
Q ss_pred c--------CcchhhhHhHHHHHHH
Q 041588 235 K--------GWSVGFGIPTAFTICS 251 (540)
Q Consensus 235 ~--------g~~~~f~i~~~~~~~~ 251 (540)
. +|+..+.+..+..++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (491)
T 4gc0_A 189 GDASWLNTDGWRYMFASECIPALLF 213 (491)
T ss_dssp SCTTTTTTTHHHHHHHTTHHHHHHH
T ss_pred cccccccchhhHHHhhhhhhhhhhh
Confidence 2 3555555444443333
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.48 E-value=3.9e-13 Score=141.02 Aligned_cols=180 Identities=14% Similarity=0.108 Sum_probs=149.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCcchhhhhhhh
Q 041588 39 WKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYL-GQPALKHVHAIFK 117 (540)
Q Consensus 39 ~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~-G~~~~~~~~~~~~ 117 (540)
.+.++.+++..++....++++..++|.|+.+.+|++..+++.+.....++..++.+++|+++||+. |
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~------------ 318 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRG------------ 318 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------
Confidence 467788888889999999999999999999889999999999999999999999999999999942 7
Q ss_pred cccchHHHHHHHHHHH-HHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588 118 LQGRFRTLVVFSCIYS-VGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD 196 (540)
Q Consensus 118 ~~~r~~~i~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~ 196 (540)
||+.+.++..+.. ++.+++.... ..+...+.+..++.|++.+...+...++..|.+|
T Consensus 319 ---~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 376 (451)
T 1pw4_A 319 ---NRGATGVFFMTLVTIATIVYWMNP-------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAP 376 (451)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHTTSCC-------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSC
T ss_pred ---CchhHHHHHHHHHHHHHHHHHHhc-------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhc
Confidence 8888887776655 5555443321 1235566677778888888888888899999999
Q ss_pred CCChHHHHhhhhhHHHHHHHHHH-HHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588 197 EADEKEAIQKYVFFNWFFFAINM-GAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG 258 (540)
Q Consensus 197 ~~~~~~~~~r~~~~~~~~~~~~i-G~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~ 258 (540)
++. |++++++++...++ |+.++|.+.|++.+..||...|++.+++.+++.++.+..
T Consensus 377 ~~~------~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 377 KKA------AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp TTH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 876 99999999999999 999999999999999999999998888777776665543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.41 E-value=5.3e-12 Score=131.92 Aligned_cols=170 Identities=14% Similarity=0.104 Sum_probs=137.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH-hhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhh
Q 041588 39 WKASPFIIVNEVAERLAFFAIAVNMTAY-LVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFK 117 (540)
Q Consensus 39 ~~~~~~i~~~~~~~~~~~y~~~~~l~~y-l~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~ 117 (540)
.+.++..++..++....++++..+++.| +++.+|++..+++.......++..++.+++|+++||+ |
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~------------ 323 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-A------------ 323 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-C------------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-c------------
Confidence 3567777788888888899999999999 8888899999999999999999999999999999998 9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588 118 LQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE 197 (540)
Q Consensus 118 ~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~ 197 (540)
||+++.++.++..++.+++.... +.. ..+...+.+++.+...|...++..|.+|+
T Consensus 324 ---~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 378 (438)
T 3o7q_A 324 ---PHKVLAAYALIAMALCLISAFAG---------------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQ 378 (438)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHCC---------------------HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGG
T ss_pred ---chHHHHHHHHHHHHHHHHHHHcC---------------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999988888877766551 222 34445778888888889999998898885
Q ss_pred CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC-cchhhhHhHHHHHHHHHH
Q 041588 198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG-WSVGFGIPTAFTICSIII 254 (540)
Q Consensus 198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g-~~~~f~i~~~~~~~~~i~ 254 (540)
+ ++.+.++.. ...+|+.++|.+.|++.+..| ++..|++.+++.++.++.
T Consensus 379 ~-------~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 379 D-------TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp G-------HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred c-------ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 4 344444444 456999999999999999999 999998766555444433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.31 E-value=8.4e-12 Score=130.57 Aligned_cols=178 Identities=10% Similarity=0.052 Sum_probs=128.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCC---hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhh
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQS---LPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIF 116 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s---~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~ 116 (540)
+.++...+..+.....++....++|.|+.+.++.. ....+....+..+...++.+++|+++||+ |
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g----------- 287 (417)
T 2cfq_A 220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-G----------- 287 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C-----------
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-----------
Confidence 44555555445555566666677899987766532 33445666666667778899999999998 9
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588 117 KLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD 196 (540)
Q Consensus 117 ~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~ 196 (540)
||+++.++..+..++.+++... .+...+++...+.+++.+...+...++.+|.+|
T Consensus 288 ----~~~~l~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p 342 (417)
T 2cfq_A 288 ----GKNALLLAGTIMSVRIIGSSFA---------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFE 342 (417)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHTTC---------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999998887777776555432 123445555555666655555666788999999
Q ss_pred CCChHHHHhhhhhHHH-HHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588 197 EADEKEAIQKYVFFNW-FFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFP 260 (540)
Q Consensus 197 ~~~~~~~~~r~~~~~~-~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~ 260 (540)
++. |++++++ ++.+..+|+.++|.++|++.+..|+...|.+.+++.+++.++.+...+
T Consensus 343 ~~~------~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 343 VRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHH------HHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHH------HHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 876 8888888 577888999999999999999888888898877777777666554444
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.15 E-value=7.3e-11 Score=125.47 Aligned_cols=187 Identities=12% Similarity=0.042 Sum_probs=137.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccc
Q 041588 41 ASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQG 120 (540)
Q Consensus 41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~ 120 (540)
..+.+.+..++....++....+++.|+.+.++.+..+++...........++.++.|+++||+ |
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~--------------- 347 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-K--------------- 347 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-T---------------
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-h---------------
Confidence 345555556666666676778889999988888867777777888888888899999999998 8
Q ss_pred chHHHH-----HHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccC
Q 041588 121 RFRTLV-----VFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQY 195 (540)
Q Consensus 121 r~~~i~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~ 195 (540)
||+... ++.++..++++++........ +....+...+.++.++.+++.+...+...++..|.+
T Consensus 348 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 415 (491)
T 4aps_A 348 KNQPSSPTKFAVGLMFAGLSFLLMAIPGALYG------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLA 415 (491)
T ss_dssp TC---CHHHHHHHHHHHHHHHTTTHHHHHHCC------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHT
T ss_pred ccCCCchHHHHHHHHHHHHHHHHHHHHHHhcC------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence 775544 666667777666655421100 001124556677788889999998899999999999
Q ss_pred CCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCccc
Q 041588 196 DEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYY 262 (540)
Q Consensus 196 ~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~ 262 (540)
|++. |+++.++++...++|+.++|.+.+++.+. ++...|.+.+++.+++.++++...++.
T Consensus 416 p~~~------~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 416 PKAF------NSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp TTTC------SSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC----
T ss_pred CHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988 99999999999999999999999988764 677788777777776666666555443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.13 E-value=6.6e-10 Score=117.92 Aligned_cols=180 Identities=10% Similarity=0.009 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHH
Q 041588 45 IIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRT 124 (540)
Q Consensus 45 i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~ 124 (540)
+....+.....++.+..+. .++.+..+.+................++.++++++.||+ | ||+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-G---------------rr~~ 344 (491)
T 4gc0_A 282 VMLSIFQQFVGINVVLYYA-PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-G---------------RKPL 344 (491)
T ss_dssp HHHHHHHHHTCHHHHHHHH-HHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C---------------SHHH
T ss_pred HHHHHHHHHhhhhHHHhcc-hHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-c---------------Ccch
Confidence 3333344444455454444 445567788888777777777888889999999999998 9 9999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHH-HHHhcCCCccchhhhhhccCCCCChHHH
Q 041588 125 LVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGL-IALGTRDIKPCVSSFGADQYDEADEKEA 203 (540)
Q Consensus 125 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~g~g~~~~~~~~~~~d~~~~~~~~~~ 203 (540)
++.+.....++.+.++...... ..... .++...+ .+....+..|....+.+|.||.+.
T Consensus 345 ~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~---- 403 (491)
T 4gc0_A 345 QIIGALGMAIGMFSLGTAFYTQ----------------APGIV-ALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI---- 403 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT----------------CCHHH-HHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTT----
T ss_pred hccchHHHHHHHHHHHHHHhcc----------------cchHH-HHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhH----
Confidence 9999988888877766543211 11222 2222222 222222344677788999999998
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhhhh------ccCcchhhhHhHHHHHHHHHHHHhcCccccc
Q 041588 204 IQKYVFFNWFFFAINMGAIFGITVLVYIQE------QKGWSVGFGIPTAFTICSIIIVAAGFPYYRY 264 (540)
Q Consensus 204 ~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~------~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~~ 264 (540)
|+++.++.+....+|+.+++.+.+.+.+ ..++...|++.+++.+++.+..++..||.+.
T Consensus 404 --R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 404 --RGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 9999999999999999998888776643 3456667777777777777776666676543
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.78 E-value=9.7e-10 Score=112.45 Aligned_cols=163 Identities=10% Similarity=-0.049 Sum_probs=124.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588 40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119 (540)
Q Consensus 40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~ 119 (540)
|.++...+..++....++++..++|.|+++.+|++..+++.+.....++..++.++.|+++||+ |
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~-------------- 263 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-S-------------- 263 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-H--------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------------
Confidence 5667777888888888999999999999988999999999999999999999999999999997 7
Q ss_pred cchHHHHHHHHH-HHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588 120 GRFRTLVVFSCI-YSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA 198 (540)
Q Consensus 120 ~r~~~i~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~ 198 (540)
+ + +..+... ...+..++..... ...+.+.+++...+.+++.+...+...++..|.+| +
T Consensus 264 -~-~-~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~ 322 (375)
T 2gfp_A 264 -T-L-MWQSVICCLLAGLLMWIPDWF-----------------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-F 322 (375)
T ss_dssp -H-H-HHHHHHHHHHTSSSSSHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-H
T ss_pred -H-H-HHHHHHHHHHHHHHHHHHhhh-----------------ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-c
Confidence 6 2 2233222 2222221111100 00134556667778889988889999999999886 4
Q ss_pred ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHh
Q 041588 199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIP 244 (540)
Q Consensus 199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~ 244 (540)
+ |+++.++++...++|+.++|.+.+.+.+..+|...+.+.
T Consensus 323 ~------~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 323 L------AGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMT 362 (375)
T ss_dssp H------HHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred c------cchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 3 899999999999999999999999998877788777653
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.92 E-value=2.3e-06 Score=91.33 Aligned_cols=122 Identities=12% Similarity=0.124 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHH
Q 041588 123 RTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKE 202 (540)
Q Consensus 123 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~ 202 (540)
+.+.++.++..++++++........ +....+...+.++.++.+++.+...+...++..|..|++.
T Consensus 374 ~~~~~g~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~--- 438 (524)
T 2xut_A 374 RKMGAGIAITGLSWIVVGTIQLMMD------------GGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM--- 438 (524)
T ss_dssp HHHHTHHHHHHHHHHTTTTTTTTTT------------TTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc------------CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH---
Confidence 4566666666666665544311000 0011234556677888899998888999999999999887
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhcc--Cc---------chhhhHhHHHHHHHHHHHHhcCccc
Q 041588 203 AIQKYVFFNWFFFAINMGAIFGITVLVYIQEQK--GW---------SVGFGIPTAFTICSIIIVAAGFPYY 262 (540)
Q Consensus 203 ~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~--g~---------~~~f~i~~~~~~~~~i~~~~~~~~~ 262 (540)
|+++.++++...++|+.++|.+.+++.+.. +| ...|++.+++.+++.++++...+++
T Consensus 439 ---~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (524)
T 2xut_A 439 ---KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSY 506 (524)
T ss_dssp ---CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred ---HhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999987642 23 2236666666666666655554443
Done!