BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041590
(493 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KS8|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 2.5.
pdb|1KSC|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 5.6.
pdb|1KSD|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 6.5
Length = 433
Score = 165 bits (418), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 140/430 (32%), Positives = 200/430 (46%), Gaps = 65/430 (15%)
Query: 47 DSSGITNDLLGGYYDAGDAIKFHFPASFNMTMLSWSVIEYRAKYEAAGELNHVKEIIKWG 106
D DL GGY+DAGD +KF FP ++ T+L+W +I++ A Y +AG L+ ++ +KW
Sbjct: 40 DQGDQGQDLTGGYFDAGDFVKFGFPMAYTATVLAWGLIDFEAGYSSAGALDDGRKAVKWA 99
Query: 107 TDYLLKTFNHSADSISRIIAQVGVGDISGGNKIPNDLYCWIRPEGIDYDRPVQECTSS-- 164
TDY +K S + QVG GD D W RPE + RP + +S
Sbjct: 100 TDYFIKAHT----SQNEFYGQVGQGDA--------DHAFWGRPEDMTMARPAYKIDTSRP 147
Query: 165 -SDLAAEM----AAASIVFKD-NEEYSKKLIHSAIMIFKFSRQYRGRYSAGGVEAGWFYN 218
SDLA E AAASIVF++ + YS L+ A +F F+ YRG+YS +A FY
Sbjct: 148 GSDLAGETAAALAAASIVFRNVDGTYSNNLLTHARQLFDFANNYRGKYSDSITDARNFYA 207
Query: 219 SRSYWDEFTWSGAWLYYATGNSSYLKLVTTTGLGKQAGIFRGILDNSLLSWDNMPAGTAX 278
S Y DE W+ AWLY AT +++YL T L + G+ L+WD+ +G
Sbjct: 208 SADYRDELVWAAAWLYRATNDNTYLN--TAESLYDEFGLQNW---GGGLNWDSKVSGVQV 262
Query: 279 XXXXXXXXXXXGYPYDEMLRAFHNQTAI--TMCSYLPNFSSWNATKAKLSFSFYRRLIQL 336
+L N+ A T+ SY+ N+ N K + L
Sbjct: 263 -----------------LLAKLTNKQAYKDTVQSYV-NYLINNQQKTPKGLLYIDMWGTL 304
Query: 337 NHGRPQPLQYVTNAAFLA------SLFSNCLSCWFTWMIDYILGNNPQKMSYLVGFGSPY 390
H NAAF+ L ++ + IDY LG+ + S++ GFGS
Sbjct: 305 RH--------AANAAFIMLEAAELGLSASSYRQFAQTQIDYALGDGGR--SFVCGFGSNP 354
Query: 391 PQYVHHRGASIPKNKIKYSCKRGWKWRDSSKPNPNTLVGAMVAGPHKHDGFHDVRSNYNY 450
P HHR +S P +C W +S PN + L GA+V GP ++D + D RS+Y +
Sbjct: 355 PTRPHHRSSSCPPAPA--TCD--WNTFNSPDPNYHVLSGALVGGPDQNDNYVDDRSDYVH 410
Query: 451 TVPTLHDNAG 460
NAG
Sbjct: 411 NEVATDYNAG 420
>pdb|1JS4|A Chain A, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|1JS4|B Chain B, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|4TF4|A Chain A, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|4TF4|B Chain B, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|3TF4|A Chain A, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|3TF4|B Chain B, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|1TF4|A Chain A, EndoEXOCELLULASE FROM THERMOMONOSPORA
pdb|1TF4|B Chain B, EndoEXOCELLULASE FROM THERMOMONOSPORA
Length = 605
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 136/441 (30%), Positives = 201/441 (45%), Gaps = 84/441 (19%)
Query: 37 GDSCLTDGKFDSSGITNDLLGGYYDAGDAIKFHFPASFNMTMLSWSVIEYRAKYEAAGEL 96
GDS L DG + + DL GG+YDAGD +KF FP +F TML+W IE Y +G++
Sbjct: 35 GDSGLNDG----ADVGLDLTGGWYDAGDHVKFGFPMAFTATMLAWGAIESPEGYIRSGQM 90
Query: 97 NHVKEIIKWGTDYLLKTFNHSADSISRIIAQVGVGDISGGNKIPNDLYCWIRPEGIDYDR 156
++K+ ++W DY +K H + ++ + QVG GD D W E + +R
Sbjct: 91 PYLKDNLRWVNDYFIKA--HPSPNV--LYVQVGDGDA--------DHKWWGPAEVMPMER 138
Query: 157 P---VQECTSSSDL----AAEMAAASIVFKDNE-EYSKKLIHSAIMIFKFSRQYRGRYSA 208
P V SD+ AA MAA+SIVF D++ Y+ L+ A ++ F+ YRG YS
Sbjct: 139 PSFKVDPSCPGSDVAAETAAAMAASSIVFADDDPAYAATLVQHAKQLYTFADTYRGVYS- 197
Query: 209 GGVEAGWFYNSRS-YWDEFTWSGAWLYYATGNSSYL-------KLVTTTGLGKQAGIFRG 260
V AG FYNS S Y DE W WLY ATG+ SYL ++T +Q R
Sbjct: 198 DCVPAGAFYNSWSGYQDELVWGAYWLYKATGDDSYLAKAEYEYDFLST----EQQTDLRS 253
Query: 261 ILDNSLLSWDNMPAGTAXXXXXXXXXXXXGYPYDEMLRAFHNQTAITMCSYLPNFSSWNA 320
++WD+ GT Y + + Q I + ++ +
Sbjct: 254 Y--RWTIAWDDKSYGT----------------YVLLAKETGKQKYIDDANRWLDYWTVGV 295
Query: 321 TKAKLSFSFYRRLIQLNHGRPQPLQYVTNAAFLASLFSNCLS---------CWFTWMIDY 371
++ +S + G L+Y N AF+A +++ + + I+Y
Sbjct: 296 NGQRVPYSPGGMAVLDTWGA---LRYAANTAFVALVYAKVIDDPVRKQRYHDFAVRQINY 352
Query: 372 ILGNNPQKMSYLVGFGSPYPQYVHHRGASIPKNKIKYSCKRGWKWRD---SSKPNPNTLV 428
LG+NP+ SY+VGFG+ P+ HHR A W D S N + L
Sbjct: 353 ALGDNPRNSSYVVGFGNNPPRNPHHRTAHG-------------SWTDSIASPAENRHVLY 399
Query: 429 GAMVAGP-HKHDGFHDVRSNY 448
GA+V GP +D + D R +Y
Sbjct: 400 GALVGGPGSPNDAYTDDRQDY 420
>pdb|1IA6|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticum
pdb|1IA7|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticium In Complex With Cellobiose
Length = 441
Score = 137 bits (346), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 116/427 (27%), Positives = 193/427 (45%), Gaps = 63/427 (14%)
Query: 47 DSSGITNDLLGGYYDAGDAIKFHFPASFNMTMLSWSVIEYRAKYEAAGELNHVKEIIKWG 106
D S + DL GGY+DAGD +KF P ++ +L WS+ E++ ++A G + + +K+
Sbjct: 42 DGSDVGVDLTGGYHDAGDHVKFGLPQGYSAAILGWSLYEFKESFDATGNTTKMLQQLKYF 101
Query: 107 TDYLLKTFNHSADSISRIIAQVGVGDISGGNKIPNDLYCWIRPEGIDYDRP----VQECT 162
TDY LK+ +S + QVG G+ D W PE RP +
Sbjct: 102 TDYFLKSHPNS----TTFYYQVGEGNA--------DHTYWGAPEEQTGQRPSLYKADPSS 149
Query: 163 SSSDLAAEMAAASIVFKDN-----EEYSKKLIHSAIMIFKFSRQYRGRYSAGGVEAGWFY 217
+SD+ +E +AA + N Y+ K +++A ++ + +G G ++ FY
Sbjct: 150 PASDILSETSAALTLMYLNYKNIDSAYATKCLNAAKELYAMGKANQG---VGNGQS--FY 204
Query: 218 NSRSYWDEFTWSGAWLYYATGNSSYL----KLVTTTGLGKQAGIFRGILDNSLLSWDNMP 273
+ S+ D+ W+ WLY AT +S+Y+ + +T LG + + D + WD+M
Sbjct: 205 QATSFGDDLAWAATWLYTATNDSTYITDAEQFIT---LGNTMNENK-MQDKWTMCWDDMY 260
Query: 274 AGTAXXXXXXXXXXXXGYPYDEMLRAFHNQTAITMCSYLPNFSSWNATKAKLSFSFYRRL 333
A Y + + F+ T + P W + L ++ +
Sbjct: 261 VPAALRLAQITGKQI----YKDAIE-FNFNYWKTQVTTTPGGLKWLSNWGVLRYAAAESM 315
Query: 334 IQLNHGRPQPLQYVTNAAFLASLFSNCLSCWFTWMIDYILGNNPQKMSYLVGFGSPYPQY 393
+ L + + P Q + + A +DYILG+NP MSY++G+GS + +
Sbjct: 316 VMLVYCKQNPDQSLLDLA--------------KKQVDYILGDNPANMSYIIGYGSNWCIH 361
Query: 394 VHHRGASIPKNKIKYSCKRGWKWRDSSKPNPNTLVGAMVAGPHKHDGFHDVRSNYNYTVP 453
HHR A+ Y+ G D++KP + L GA+V GP ++D F D + Y YT
Sbjct: 362 PHHRAAN------GYTYANG----DNAKPAKHLLTGALVGGPDQNDKFLDDANQYQYTEV 411
Query: 454 TLHDNAG 460
L NAG
Sbjct: 412 ALDYNAG 418
>pdb|2XFG|A Chain A, Reassembly And Co-Crystallization Of A Family 9 Processive
Endoglucanase From Separately Expressed Gh9 And Cbm3c
Modules
Length = 466
Score = 131 bits (330), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 133/444 (29%), Positives = 192/444 (43%), Gaps = 68/444 (15%)
Query: 37 GDSCLTDGKFDSSGITNDLLGGYYDAGDAIKFHFPASFNMTMLSWSVIEYRAKYEAAGEL 96
GDS L DGK +GI DL GG+YDAGD +KF+ P S++ ML W+V EY ++ +G+
Sbjct: 56 GDSGLDDGK--DAGI--DLTGGWYDAGDHVKFNLPMSYSAAMLGWAVYEYEDAFKQSGQY 111
Query: 97 NHVKEIIKWGTDYLLKTFNHSADSISRIIAQVGVGDISGGNKIPNDLYCWIRPEGIDYDR 156
NH+ IKW DY +K H + QVG G P ++ RP DR
Sbjct: 112 NHILNNIKWACDYFIKC--HPEKDV--YYYQVGDGHADHAWWGPAEVMPMERPS-YKVDR 166
Query: 157 PVQECTSSSDLAAEMAAASIVFKD-NEEYSKKLIHSAIMIFKFSRQYRGRYSAGGVEAGW 215
T ++ +A +A ASI+FK + EYSK+ + A +F+F+ + G A
Sbjct: 167 SSPGSTVVAETSAALAIASIIFKKVDGEYSKECLKHAKELFEFADTTKS--DDGYTAANG 224
Query: 216 FYNSRS-YWDEFTWSGAWLYYATGNSSYLKLVTTT----GLGKQAGIFRGILDNSLLSWD 270
FYNS S ++DE +W+ WLY AT +SSYL + G Q I + WD
Sbjct: 225 FYNSWSGFYDELSWAAVWLYLATNDSSYLDKAESYSDKWGYEPQTNIPKYKWAQ---CWD 281
Query: 271 NMPAGTAXXXXXXXXXXXXGYPYDEMLRAFHNQTAITMCSYLPNFSSWNATKAKLSFSFY 330
++ GT +L N + + W ++
Sbjct: 282 DVTYGTYL-----------------LLARIKNDNGKYKEAIERHLDWWTTGYNGERITYT 324
Query: 331 -RRLIQLNHGRPQPLQYVTNAAFLASLFSNCLSC----------WFTWMIDYILGNNPQK 379
+ L L+ + L+Y T AFLA ++S+ + + DY LG+ +
Sbjct: 325 PKGLAWLD--QWGSLRYATTTAFLACVYSDWENGDKEKAKTYLEFARSQADYALGSTGR- 381
Query: 380 MSYLVGFGSPYPQYVHHRGASIPKNKIKYSCKRGWKWRDSSKPNP---NTLVGAMVAGPH 436
S++VGFG P+ HHR A W DS P + L GA+V GP
Sbjct: 382 -SFVVGFGENPPKRPHHRTAHG-------------SWADSQMEPPEHRHVLYGALVGGPD 427
Query: 437 KHDGFHDVRSNYNYTVPTLHDNAG 460
D + D SNY NAG
Sbjct: 428 STDNYTDDISNYTCNEVACDYNAG 451
>pdb|4DOD|A Chain A, The Structure Of Cbescii Cela Gh9 Module
pdb|4DOE|A Chain A, The Liganded Structure Of Cbescii Cela Gh9 Module
Length = 475
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 132/435 (30%), Positives = 195/435 (44%), Gaps = 75/435 (17%)
Query: 37 GDSCLTDGKFDSSGITNDLLGGYYDAGDAIKFHFPASFNMTMLSWSVIEYRAKYEAAGEL 96
GDS L DG+ +G+ DL GG++DAGD +KF+ P S+ TMLSW+V EY+ + +G+L
Sbjct: 57 GDSALKDGQ--DNGL--DLTGGWFDAGDHVKFNLPMSYTGTMLSWAVYEYKDAFVKSGQL 112
Query: 97 NHVKEIIKWGTDYLLKTFNHSADSISRIIAQVGVGDISGGNKIPNDLYCWIRPEGIDYDR 156
H+ I+W DY +K S+ + VGD S D W E + +R
Sbjct: 113 EHILNQIEWVNDYFVKCHP------SKYVYYYQVGDGS------KDHAWWGPAEVMQMER 160
Query: 157 PVQECTSSS-------DLAAEMAAASIVFKD-NEEYSKKLIHSAIMIFKFSRQYRGRYSA 208
P + T SS + AA +AAASIV KD N + + A +++F+ + A
Sbjct: 161 PSFKVTQSSPGSTVVAETAASLAAASIVLKDRNPTKAATYLQHAKELYEFAEVTKS--DA 218
Query: 209 GGVEAGWFYNSRS-YWDEFTWSGAWLYYATGNSSYLKLVTTTGLGKQAGIFRGILDNSLL 267
G A +YNS S ++DE +W+ WLY AT +S+YL + +D
Sbjct: 219 GYTAANGYYNSWSGFYDELSWAAVWLYLATNDSTYLTKAESYVQNWPKISGSNTIDYKWA 278
Query: 268 -SWDNMPAGTAXXXXXXXXXXXXGYPYDEMLRAFHNQTAITMCSYLPNFSSWNATKAKLS 326
WD++ G A + + Q + Y + +N + K +
Sbjct: 279 HCWDDVHNGAALLLAKITG------------KDIYKQIIESHLDYWT--TGYNGERIKYT 324
Query: 327 FSFYRRLIQLNHGRPQPLQYVTNAAFLASLFSNCLSCWFTW----------MIDYILGNN 376
L Q L+Y T AFLA ++S+ + C T IDY LG+
Sbjct: 325 PKGLAWLDQWG-----SLRYATTTAFLAFVYSDWVGCPSTKKEIYRKFGESQIDYALGSA 379
Query: 377 PQKMSYLVGFGSPYPQYVHHRGASIPKNKIKYSCKRGWKWRDS-SKP--NPNTLVGAMVA 433
+ S++VGFG+ P+ HHR A W DS S P + +TL GA+V
Sbjct: 380 GR--SFVVGFGTNPPKRPHHRTAHS-------------SWADSQSIPSYHRHTLYGALVG 424
Query: 434 GPHKHDGFHDVRSNY 448
GP D + D SNY
Sbjct: 425 GPGSDDSYTDDISNY 439
>pdb|1K72|A Chain A, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
pdb|1K72|B Chain B, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
Length = 614
Score = 108 bits (270), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 121/434 (27%), Positives = 190/434 (43%), Gaps = 84/434 (19%)
Query: 44 GKFDSSGITNDLLGGYYDAGDAIKFHFPASFNMTMLSWSVIEYRAKYEAAGELNHVKEII 103
G D S + DL GG+YDAGD +KF+ P S+ ML+WS+ E + Y+ +G+ ++ + I
Sbjct: 38 GMKDGSDVGVDLTGGWYDAGDHVKFNLPMSYTSAMLAWSLYEDKDAYDKSGQTKYIMDGI 97
Query: 104 KWGTDYLLKTFNHSADSISRIIAQVGVGDISGGNKIPNDLYCWIRPEGIDYDRPVQECTS 163
KW DY +K + + + VGD GG D W E + +RP + +
Sbjct: 98 KWANDYFIKC------NPTPGVYYYQVGD--GG----KDHSWWGPAEVMQMERPSFKVDA 145
Query: 164 SSDLAA-------EMAAASIVFKDNE-EYSKKLIHSAIMIFKFSRQYRGRYSAGGVEAGW 215
S +A +A+A++VFK ++ Y++K I A +F + + + AG A
Sbjct: 146 SKPGSAVCASTAASLASAAVVFKSSDPTYAEKCISHAKNLFDMAD--KAKSDAGYTAASG 203
Query: 216 FYNSRSYWDEFTWSGAWLYYATGNSSYL----KLVTTTGLGKQAGIFRGILDNSLLSWDN 271
+Y+S S++D+ +W+ WLY AT +S+YL V G +Q I I WD+
Sbjct: 204 YYSSSSFYDDLSWAAVWLYLATNDSTYLDKAESYVPNWGKEQQTDI---IAYKWGQXWDD 260
Query: 272 MPAGTAXXXXXXXXXXXXGYPYDEMLRAFHNQTAITMCSYLPNFSSW----NATKAKLSF 327
+ G E+L A + S N W N T+ +
Sbjct: 261 VHYGA------------------ELLLAKLTNKQLYKDSIEMNLDFWTTGVNGTRVSYTP 302
Query: 328 SFYRRLIQLNHGRPQPLQYVTNAAFLASLFSNCLSC----------WFTWMIDYILGNNP 377
L Q L++ T AFLA +++ C + IDY LG+
Sbjct: 303 KGLAWLFQWGS-----LRHATTQAFLAGVYAEWEGCTPSKVSVYKDFLKSQIDYALGSTG 357
Query: 378 QKMSYLVGFGSPYPQYVHHRGASIPKNKIKYSCKRGWKWRD---SSKPNPNTLVGAMVAG 434
+ S++VG+G PQ+ HHR A W D S + +T+ GA+V G
Sbjct: 358 R--SFVVGYGVNPPQHPHHRTAHG-------------SWTDQMTSPTYHRHTIYGALVGG 402
Query: 435 PHKHDGFHDVRSNY 448
P DG+ D +NY
Sbjct: 403 PDNADGYTDEINNY 416
>pdb|1GA2|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1GA2|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1G87|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1G87|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1KFG|A Chain A, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
pdb|1KFG|B Chain B, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
Length = 614
Score = 108 bits (269), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 121/434 (27%), Positives = 190/434 (43%), Gaps = 84/434 (19%)
Query: 44 GKFDSSGITNDLLGGYYDAGDAIKFHFPASFNMTMLSWSVIEYRAKYEAAGELNHVKEII 103
G D S + DL GG+YDAGD +KF+ P S+ ML+WS+ E + Y+ +G+ ++ + I
Sbjct: 38 GMKDGSDVGVDLTGGWYDAGDHVKFNLPMSYTSAMLAWSLYEDKDAYDKSGQTKYIMDGI 97
Query: 104 KWGTDYLLKTFNHSADSISRIIAQVGVGDISGGNKIPNDLYCWIRPEGIDYDRPVQECTS 163
KW DY +K + + + VGD GG D W E + +RP + +
Sbjct: 98 KWANDYFIKC------NPTPGVYYYQVGD--GG----KDHSWWGPAEVMQMERPSFKVDA 145
Query: 164 SSDLAA-------EMAAASIVFKDNE-EYSKKLIHSAIMIFKFSRQYRGRYSAGGVEAGW 215
S +A +A+A++VFK ++ Y++K I A +F + + + AG A
Sbjct: 146 SKPGSAVCASTAASLASAAVVFKSSDPTYAEKCISHAKNLFDMAD--KAKSDAGYTAASG 203
Query: 216 FYNSRSYWDEFTWSGAWLYYATGNSSYL----KLVTTTGLGKQAGIFRGILDNSLLSWDN 271
+Y+S S++D+ +W+ WLY AT +S+YL V G +Q I I WD+
Sbjct: 204 YYSSSSFYDDLSWAAVWLYLATNDSTYLDKAESYVPNWGKEQQTDI---IAYKWGQCWDD 260
Query: 272 MPAGTAXXXXXXXXXXXXGYPYDEMLRAFHNQTAITMCSYLPNFSSW----NATKAKLSF 327
+ G E+L A + S N W N T+ +
Sbjct: 261 VHYGA------------------ELLLAKLTNKQLYKDSIEMNLDFWTTGVNGTRVSYTP 302
Query: 328 SFYRRLIQLNHGRPQPLQYVTNAAFLASLFSNCLSC----------WFTWMIDYILGNNP 377
L Q L++ T AFLA +++ C + IDY LG+
Sbjct: 303 KGLAWLFQWGS-----LRHATTQAFLAGVYAEWEGCTPSKVSVYKDFLKSQIDYALGSTG 357
Query: 378 QKMSYLVGFGSPYPQYVHHRGASIPKNKIKYSCKRGWKWRD---SSKPNPNTLVGAMVAG 434
+ S++VG+G PQ+ HHR A W D S + +T+ GA+V G
Sbjct: 358 R--SFVVGYGVNPPQHPHHRTAHG-------------SWTDQMTSPTYHRHTIYGALVGG 402
Query: 435 PHKHDGFHDVRSNY 448
P DG+ D +NY
Sbjct: 403 PDNADGYTDEINNY 416
>pdb|2YIK|A Chain A, Catalytic Domain Of Clostridium Thermocellum Celt
Length = 611
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 103/212 (48%), Gaps = 28/212 (13%)
Query: 43 DGKFDSSGITNDLLGGYYDAGDAIKFHFPASFNMTMLSWSVIEYRAKYEAAGELNHVKEI 102
DGK D SG G++DAGD +KF P ++ + + W E++ ++ A G+ H + I
Sbjct: 105 DGKVDVSG-------GFHDAGDHVKFGLPEAYAASTVGWGYYEFKDQFRATGQAVHAEVI 157
Query: 103 IKWGTDYLLK-TFNHSADSISRIIAQVGVGDISGGNKIPNDLYCWIRPEG---------I 152
+++ DY ++ TF ++ ++ QVG GDI D W PE I
Sbjct: 158 LRYFNDYFMRCTFRDASGNVVAFCHQVGDGDI--------DHAFWGAPENDTMFRRGWFI 209
Query: 153 DYDRPVQECTSSSDLAAEMAAASIVFKDNE-EYSKKLIHSAIMIFKFSRQYRGRYSAGGV 211
++P + S++ AA +A + FKD + +Y+ K + A +F F+ + G
Sbjct: 210 TKEKPGTDIISAT--AASLAINYMNFKDTDPQYAAKSLDYAKALFDFAEKNPKGVVQGED 267
Query: 212 EAGWFYNSRSYWDEFTWSGAWLYYATGNSSYL 243
+Y S + D++ W+ AWLY AT N YL
Sbjct: 268 GPKGYYGSSKWQDDYCWAAAWLYLATQNEHYL 299
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 364 WFTWMIDYILGNNPQKMSYLVGFGSPYPQYVHHRGASIPKNKIKYSCKRGWKWRDSSKPN 423
W +DY+LG NP Y+VG+ S +Y HHR AS G K + S P+
Sbjct: 420 WARSQMDYLLGKNPLNRCYVVGYSSNSVKYPHHRAAS------------GLKDANDSSPH 467
Query: 424 PNTLVGAMVAGPHKHDGFHDVRSNYNYTVPTLHDNAG 460
L GA+V GP D D ++Y Y + NA
Sbjct: 468 KYVLYGALVGGPDASDQHVDRTNDYIYNEVAIDYNAA 504
>pdb|3E9V|A Chain A, Crystal Structure Of Human B-Cell Translocation Gene 2
(Btg2)
Length = 120
Score = 31.6 bits (70), Expect = 0.97, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 106 GTDYLLKTFNHSADSI-SRIIAQVGVGDISGGNKIPNDLYCWIRPEGIDY 154
G+ Y NH D I SR+ +Q+G+ +P++L W+ P + Y
Sbjct: 55 GSGYRCIRINHKXDPIISRVASQIGLSQPQLHQLLPSELTLWVDPYEVSY 104
>pdb|3DJU|B Chain B, Crystal Structure Of Human Btg2
Length = 122
Score = 31.6 bits (70), Expect = 1.00, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 106 GTDYLLKTFNHSADSI-SRIIAQVGVGDISGGNKIPNDLYCWIRPEGIDY 154
G+ Y NH D I SR+ +Q+G+ +P++L W+ P + Y
Sbjct: 56 GSGYRCIRINHKMDPIISRVASQIGLSQPQLHQLLPSELTLWVDPYEVSY 105
>pdb|3EZ8|A Chain A, Crystal Structure Of Endoglucanase Cel9a From The
Thermoacidophilic Alicyclobacillus Acidocaldarius
pdb|3GZK|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela
pdb|3H2W|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellobiose
pdb|3H3K|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellotetraose
pdb|3RX5|A Chain A, Structure Of Aacel9a In Complex With Cellotriose-Like
Isofagomine
pdb|3RX7|A Chain A, Structure Of Aacel9a In Complex With Cellotetraose-Like
Isofagomine
pdb|3RX8|A Chain A, Structure Of Aacel9a In Complex With Cellobiose-Like
Isofagomine
Length = 537
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 19/69 (27%)
Query: 370 DYILGNNPQKMSYLVGFGSPYPQYVHHRGASIPKNKIKYSCKRGWKWRDSSKPNPNTLVG 429
DY+ G NP Y+ GFG ++ HHR + D P P +VG
Sbjct: 436 DYLFGANPLGQCYVTGFGQRPVRHPHHRPSVA---------------DDVDHPVPGMVVG 480
Query: 430 AMVAGPHKH 438
GP++H
Sbjct: 481 ----GPNRH 485
>pdb|3DJN|B Chain B, Crystal Structure Of Mouse Tis21
Length = 118
Score = 30.0 bits (66), Expect = 3.2, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 106 GTDYLLKTFNHSADSI-SRIIAQVGVGDISGGNKIPNDLYCWIRPEGIDY 154
G+ Y NH D I S++ +Q+G+ +P++L W+ P + Y
Sbjct: 55 GSGYRCIRINHKMDPIISKVASQIGLSQPQLHRLLPSELTLWVDPYEVSY 104
>pdb|2A5S|A Chain A, Crystal Structure Of The Nr2a Ligand Binding Core In
Complex With Glutamate
pdb|2A5T|B Chain B, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 284
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 21/52 (40%)
Query: 196 FKFSRQYRGRYSAGGVEAGWFYNSRSYWDEFTWSGAWLYYATGNSSYLKLVT 247
+ + QY R++ GVE D F + A L Y G KLVT
Sbjct: 180 YPYMHQYMTRFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVT 231
>pdb|3IAY|A Chain A, Ternary Complex Of Dna Polymerase Delta
Length = 919
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 13/116 (11%)
Query: 33 MPNDGDSCLTDGKFDSSGITNDLLGGYYDAGDAIKFHFPASFNMTMLSWSVIEYRAKYEA 92
+P D D L D F +L G D + F F +T SV+ ++
Sbjct: 36 LPTDFDPSLYDISFQQIDAEQSVLNGIKDENTSTVVRF---FGVTSEGHSVLCNVTGFKN 92
Query: 93 --------AGELNHVKEIIKWGTDYLLKTFNHSADSISRIIAQVGVGDISGGNKIP 140
+ + N ++I K+ YL +TF+H+ DSI ++++ + SG K+P
Sbjct: 93 YLYVPAPNSSDANDQEQINKF-VHYLNETFDHAIDSIE-VVSKQSIWGYSGDTKLP 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,151,693
Number of Sequences: 62578
Number of extensions: 691820
Number of successful extensions: 1204
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1158
Number of HSP's gapped (non-prelim): 31
length of query: 493
length of database: 14,973,337
effective HSP length: 103
effective length of query: 390
effective length of database: 8,527,803
effective search space: 3325843170
effective search space used: 3325843170
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)