Query 041591
Match_columns 306
No_of_seqs 121 out of 161
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 14:46:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041591.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041591hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 95.0 0.063 2.1E-06 42.8 7.0 67 117-183 38-105 (110)
2 2i68_A Protein EMRE; transmemb 94.7 0.029 1E-06 47.0 4.4 67 117-183 38-105 (137)
3 3b5d_A Multidrug transporter E 22.8 15 0.00051 28.9 -0.5 28 275-302 70-97 (110)
4 1ihs_I Hirutonin; hydrolase(se 14.3 48 0.0017 20.5 0.5 13 230-242 9-21 (26)
5 3o7q_A L-fucose-proton symport 12.5 6.8E+02 0.023 21.7 9.8 28 23-50 155-183 (438)
6 5gds_I Hirunorm V; serine prot 11.5 66 0.0023 20.0 0.6 10 230-239 14-23 (26)
7 3m1m_A ORF904; primase, polyme 10.4 82 0.0028 30.3 1.0 18 231-248 223-240 (335)
8 3b23_C Variegin; hydrolase-hyd 7.6 1E+02 0.0036 20.1 0.3 12 230-241 17-28 (32)
9 4aqn_A Pesticin; toxin, bacter 4.8 2.2E+02 0.0075 27.5 1.0 22 225-246 314-335 (357)
10 2h80_A STAR-related lipid tran 4.6 2.4E+02 0.0081 21.9 0.8 9 56-64 26-34 (81)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=95.00 E-value=0.063 Score=42.83 Aligned_cols=67 Identities=18% Similarity=0.240 Sum_probs=59.1
Q ss_pred HHHhhhhHHHHhhcccccchhhhhh-hhhhhhhhHHHHHHHhcccCChhHHHHHHHHHHhhheeeeeC
Q 041591 117 ILLAANGFLYSVGLLYLPVSTFSLI-TASQLAFNSLFSYFLNKQKFTPYIVNCLVLLTISSTLLVFQN 183 (306)
Q Consensus 117 ~l~~~dn~lYs~Gl~YLPvST~SLi-~atQLaFtaiFs~~i~~qKfT~~iiNsVVLLT~sa~lL~l~s 183 (306)
+..+..-+++++++.++|+|+..-+ .+.--+++++.+.++-+||+|+.-+-.+++...|-.++...+
T Consensus 38 ~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3456677889999999999998776 799999999999999999999999999999999988876653
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=94.68 E-value=0.029 Score=47.02 Aligned_cols=67 Identities=18% Similarity=0.240 Sum_probs=47.5
Q ss_pred HHHhhhhHHHHhhcccccchhhhhh-hhhhhhhhHHHHHHHhcccCChhHHHHHHHHHHhhheeeeeC
Q 041591 117 ILLAANGFLYSVGLLYLPVSTFSLI-TASQLAFNSLFSYFLNKQKFTPYIVNCLVLLTISSTLLVFQN 183 (306)
Q Consensus 117 ~l~~~dn~lYs~Gl~YLPvST~SLi-~atQLaFtaiFs~~i~~qKfT~~iiNsVVLLT~sa~lL~l~s 183 (306)
+..+..-++|++++.++|+|+..-+ .+..-+++++++.++-++++|+.-+-.+.+..+|-.++...+
T Consensus 38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3455667899999999999987776 899999999999999999999999999999999988887654
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=22.81 E-value=15 Score=28.85 Aligned_cols=28 Identities=25% Similarity=0.456 Sum_probs=23.1
Q ss_pred cceeeeeEEeccCCchHHHHHHHHHHHh
Q 041591 275 IVPVLAVVFFHDKMHGLKVIAMVLAIWG 302 (306)
Q Consensus 275 v~~v~aVi~fhD~f~g~K~vAl~laiWG 302 (306)
.+.+.++++|||+++..|.+.+.+-+-|
T Consensus 70 ~~~l~~~~~~~E~~s~~~~~Gi~lIi~G 97 (110)
T 3b5d_A 70 LISLLSWGFFGQRLDLPAIIGMMLICAG 97 (110)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 3456788999999999999988877655
No 4
>1ihs_I Hirutonin; hydrolase(serine proteinase), hydrolase-hydrolase inhibitor; HET: DPN OPR; 2.00A {Homo sapiens}
Probab=14.29 E-value=48 Score=20.54 Aligned_cols=13 Identities=8% Similarity=0.250 Sum_probs=10.7
Q ss_pred ccCccchHHHHhh
Q 041591 230 SREWVNLKREMEE 242 (306)
Q Consensus 230 sgef~~l~~E~~~ 242 (306)
+|||..||+|-.+
T Consensus 9 ~gDFe~IPEeYl~ 21 (26)
T 1ihs_I 9 DGDFEEIPEEYLQ 21 (26)
T ss_pred CCCCCcCCHHHHh
Confidence 6899999999544
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=12.54 E-value=6.8e+02 Score=21.71 Aligned_cols=28 Identities=11% Similarity=0.224 Sum_probs=18.4
Q ss_pred HHHHHHHHhhccchhhhhhhhee-ecCCc
Q 041591 23 IGILASFVLCCQAAAILLGRQYY-DKGGN 50 (306)
Q Consensus 23 v~i~~~~ll~G~~~a~LL~R~Yf-~~GG~ 50 (306)
..+.....-+|...+++++..-. +++|+
T Consensus 155 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 183 (438)
T 3o7q_A 155 LNLAQTFNSFGAIIAVVFGQSLILSNVPH 183 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHTSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 44555666677778888877766 55553
No 6
>5gds_I Hirunorm V; serine protease-inhibitor complex, thrombin, thrombin synthe inhibitors, antithrombotics, hirunorms; HET: CHG NAL ALC DGL NAG; 2.10A {Homo sapiens} PDB: 4thn_I*
Probab=11.52 E-value=66 Score=19.97 Aligned_cols=10 Identities=0% Similarity=0.229 Sum_probs=7.7
Q ss_pred ccCccchHHH
Q 041591 230 SREWVNLKRE 239 (306)
Q Consensus 230 sgef~~l~~E 239 (306)
.|||.+||+|
T Consensus 14 ~gDfe~IPee 23 (26)
T 5gds_I 14 GGDYEEIPAA 23 (26)
T ss_pred CCCcccCcHh
Confidence 4788888877
No 7
>3m1m_A ORF904; primase, polymerase, replication; 1.85A {Sulfolobus islandicus}
Probab=10.39 E-value=82 Score=30.25 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=14.3
Q ss_pred cCccchHHHHhhccCCce
Q 041591 231 REWVNLKREMEEYKLGKL 248 (306)
Q Consensus 231 gef~~l~~E~~~F~~G~~ 248 (306)
.|++.+++||+.|.+|++
T Consensus 223 ~~~~~~~~e~~k~~~~k~ 240 (335)
T 3m1m_A 223 VEFEELRKELVKRDSGKP 240 (335)
T ss_dssp ---CHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHhhcCCCc
Confidence 579999999999999997
No 8
>3b23_C Variegin; hydrolase-hydrolase inhibitor complex; 2.40A {Amblyomma variegatum}
Probab=7.56 E-value=1e+02 Score=20.07 Aligned_cols=12 Identities=8% Similarity=0.127 Sum_probs=8.8
Q ss_pred ccCccchHHHHh
Q 041591 230 SREWVNLKREME 241 (306)
Q Consensus 230 sgef~~l~~E~~ 241 (306)
-|||.+||.|.-
T Consensus 17 ~gDFE~IP~~~~ 28 (32)
T 3b23_C 17 PFDFEAIPEEYL 28 (32)
T ss_pred CCChhhCCHhhh
Confidence 378888888764
No 9
>4aqn_A Pesticin; toxin, bacteriocin, colicin, three domains, muramidase; 1.98A {Yersinia pestis} PDB: 4epf_A 4arm_B 4arl_A 4arm_A 4arq_B 4arp_A 4arq_A
Probab=4.77 E-value=2.2e+02 Score=27.54 Aligned_cols=22 Identities=14% Similarity=0.365 Sum_probs=18.6
Q ss_pred hhhhcccCccchHHHHhhccCC
Q 041591 225 VGLFVSREWVNLKREMEEYKLG 246 (306)
Q Consensus 225 VGl~asgef~~l~~E~~~F~~G 246 (306)
-+-+..+||+++.+|.+.|..|
T Consensus 314 w~aV~k~DW~gA~~ELRnfgd~ 335 (357)
T 4aqn_A 314 WNKVIAKDWNGLVNAFNNIVDG 335 (357)
T ss_dssp HHHHHTTCHHHHHHHHHHCCSS
T ss_pred HHHHHhccHHHHHHHHHHhccc
Confidence 5667899999999999999543
No 10
>2h80_A STAR-related lipid transfer protein 13; helical bundle, lipid binding protein; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2jw2_A
Probab=4.57 E-value=2.4e+02 Score=21.88 Aligned_cols=9 Identities=33% Similarity=0.704 Sum_probs=0.0
Q ss_pred HHHhhcCch
Q 041591 56 TLAQFGGFP 64 (306)
Q Consensus 56 t~vQtaGfP 64 (306)
.|++-||||
T Consensus 26 ~WLRaaGFP 34 (81)
T 2h80_A 26 DWLRAAGFP 34 (81)
T ss_dssp HHHHHTTCH
T ss_pred HHHHHcCCc
Done!