Query 041591
Match_columns 306
No_of_seqs 121 out of 161
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 14:46:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041591.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041591hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54k_ f.23.5.1 (K:) Mitochon 7.1 44 0.0032 22.1 -0.1 21 284-304 4-27 (49)
2 d2i5nl1 f.26.1.1 (L:1-273) L ( 6.9 1.8E+02 0.013 25.0 3.8 90 143-233 151-254 (273)
3 d2j8cl1 f.26.1.1 (L:1-281) L ( 6.4 2.5E+02 0.018 24.2 4.5 91 142-233 150-254 (281)
4 d2dyna_ b.55.1.1 (A:) Dynamin 6.2 83 0.0061 21.6 1.1 13 52-64 98-110 (111)
5 d1cola_ f.1.1.1 (A:) Colicin A 6.0 69 0.005 26.5 0.6 48 228-278 121-168 (197)
6 d1pv7a_ f.38.1.2 (A:) Lactose 5.7 3.2E+02 0.023 20.6 4.6 31 151-181 278-308 (417)
7 d1eysl_ f.26.1.1 (L:) L (light 4.9 3.5E+02 0.026 23.1 4.7 89 143-232 159-261 (280)
8 d1t0ga_ d.120.1.2 (A:) Putativ 4.4 1.2E+02 0.0088 22.4 1.0 26 237-262 14-42 (109)
9 d4htci_ g.3.15.2 (I:) Hirudin 4.2 93 0.0068 21.3 0.1 10 230-239 53-62 (65)
10 d1ex4a1 b.34.7.1 (A:223-270) D 3.4 1.3E+02 0.0091 19.6 0.2 12 42-53 2-13 (48)
No 1
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.10 E-value=44 Score=22.08 Aligned_cols=21 Identities=29% Similarity=0.680 Sum_probs=14.5
Q ss_pred eccCCchH---HHHHHHHHHHhhc
Q 041591 284 FHDKMHGL---KVIAMVLAIWGFL 304 (306)
Q Consensus 284 fhD~f~g~---K~vAl~laiWGF~ 304 (306)
||||-+.. -+-++-+++|+++
T Consensus 4 FHdKYGn~vL~~Ga~fc~avW~yv 27 (49)
T d1v54k_ 4 FHDKYGNAVLASGATFCVAVWVYM 27 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCcEEEecccchhhhhhhhe
Confidence 67877654 3446778899874
No 2
>d2i5nl1 f.26.1.1 (L:1-273) L (light) subunit {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=6.85 E-value=1.8e+02 Score=25.02 Aligned_cols=90 Identities=17% Similarity=0.242 Sum_probs=58.6
Q ss_pred hhhhhhhHHHHHHHhcccCChhHHHHHHHHHHhhheeeeeCC----CCCC---CCcccc-------ceeeeeehhhHHHH
Q 041591 143 ASQLAFNSLFSYFLNKQKFTPYIVNCLVLLTISSTLLVFQND----SENS---TGVSKR-------KYAIGFILEAFTAI 208 (306)
Q Consensus 143 atQLaFtaiFs~~i~~qKfT~~iiNsVVLLT~sa~lL~l~s~----sd~~---~g~s~~-------kY~iGf~~~tf~~V 208 (306)
.++|=++.-|++=.-..--||+-.-||+.+=-++.++|+|-. -.|| ++++.. +..+||-..+-. +
T Consensus 151 f~HLDW~~~fs~~ygN~~YNPfHmlsI~fl~gsaLl~AmHGatILa~~~~g~~~e~~~~e~~~~FwR~~mG~s~~~~g-I 229 (273)
T d2i5nl1 151 LSHLDWVNNFGYQYLNWHYNPGHMSSVSFLFVNAMALGLHGGLILSVANPGDGDKVKTAEHENQYFRDVVGYSIGALS-I 229 (273)
T ss_dssp THHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSTTCCCCCHHHHHHHHHHHHSBCCCTTH-H
T ss_pred hHHHHHHHHHHHHhcceeeCHHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCccccchHHHHHHHHHHhccccchHH-H
Confidence 458889999999888888999999999999888888888721 1112 111111 234555442211 2
Q ss_pred HHHHHhHHHHHHHHHhhhhhcccCc
Q 041591 209 LDMVLYPYFAASCAILVGLFVSREW 233 (306)
Q Consensus 209 lemQi~~s~vAT~~~~VGl~asgef 233 (306)
=..-....+.+..-..||++.||.+
T Consensus 230 HR~~~~~A~~~~~~s~igIllsG~~ 254 (273)
T d2i5nl1 230 HRLGLFLASNIFLTGAFGTIASGPF 254 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHHHHHHHhheEEEEECCc
Confidence 2334455666777778888888863
No 3
>d2j8cl1 f.26.1.1 (L:1-281) L (light) subunit {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.38 E-value=2.5e+02 Score=24.17 Aligned_cols=91 Identities=10% Similarity=0.169 Sum_probs=60.2
Q ss_pred hhhhhhhhHHHHHHHhcccCChhHHHHHHHHHHhhheeeeeC---------CCCCC-CCcccc----ceeeeeehhhHHH
Q 041591 142 TASQLAFNSLFSYFLNKQKFTPYIVNCLVLLTISSTLLVFQN---------DSENS-TGVSKR----KYAIGFILEAFTA 207 (306)
Q Consensus 142 ~atQLaFtaiFs~~i~~qKfT~~iiNsVVLLT~sa~lL~l~s---------~sd~~-~g~s~~----kY~iGf~~~tf~~ 207 (306)
+.++|=+|.-|++-....-.||+-.-||+.+=-++.++|+|- +.||. +..+++ +-.+||-..+.+
T Consensus 150 If~hLdW~~~fs~~ygN~~YNPfHmlsI~fl~gsaLl~AmHGatIla~~~~g~~~e~~~~~~~~tF~R~~~G~s~~~~~- 228 (281)
T d2j8cl1 150 IWTHLDWVSNTGYTYGNFHYNPAHMIAISFFFTNALALALHGALVLSAANPEKGKEMRTPDHEDTFFRDLVGYSIGTLG- 228 (281)
T ss_dssp TTHHHHHHHHHHHHTSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSTTCCCCCHHHHHHHHHHHHSBCCCHHH-
T ss_pred hHHHHHHHHHHHhHhcceeeCHHHHHHHHHHHHHHHHHHhhhhhheeeccCCCCccccChhhhhhhhhhceeeeccchH-
Confidence 456899999999999999999999999999988888888872 22222 111111 234455432221
Q ss_pred HHHHHHhHHHHHHHHHhhhhhcccCc
Q 041591 208 ILDMVLYPYFAASCAILVGLFVSREW 233 (306)
Q Consensus 208 VlemQi~~s~vAT~~~~VGl~asgef 233 (306)
+=..-....+.+.....+|++.||.+
T Consensus 229 IHR~~~~~av~~~~~saigIllsGtv 254 (281)
T d2j8cl1 229 IHRLGLLLSLSAVFFSALCMIITGTI 254 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBTTT
T ss_pred HHHHHHHHHHHHHHHhheeEEEeCCc
Confidence 22233455666777788888888863
No 4
>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.16 E-value=83 Score=21.60 Aligned_cols=13 Identities=23% Similarity=0.790 Sum_probs=12.3
Q ss_pred hhhHHHHhhcCch
Q 041591 52 KWLSTLAQFGGFP 64 (306)
Q Consensus 52 kWlst~vQtaGfP 64 (306)
.|++++.|...+|
T Consensus 98 ~W~~al~~A~~~p 110 (111)
T d2dyna_ 98 SWKASFLRAGVYP 110 (111)
T ss_dssp HHHHHHHHTTCEE
T ss_pred HHHHHHHHhccCC
Confidence 9999999999988
No 5
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=6.04 E-value=69 Score=26.54 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=30.7
Q ss_pred hcccCccchHHHHhhccCCceEEeecchhhhhhhhhhHHHHHhhcccccee
Q 041591 228 FVSREWVNLKREMEEYKLGKLYAIGSTGLIFETSSLFSNAIGIAGLPIVPV 278 (306)
Q Consensus 228 ~asgef~~l~~E~~~F~~G~~~~vG~vGlIf~vSSLfs~Vi~~~~lPv~~v 278 (306)
+-.|||+.+--|+|..-.|... ..=.....|..++....++.+|.+|+
T Consensus 121 ~eTGnW~Pl~l~~Es~~~~~~A---t~va~~~fs~~~~~~~~~~g~~~~~i 168 (197)
T d1cola_ 121 YETGNWGPLMLEVESWVLSGIA---SSVALGIFSATLGAYALSLGVPAIAV 168 (197)
T ss_dssp HHHCCCHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHHHHHCCSCHHHH
T ss_pred ccCCCchHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHccccccHH
Confidence 3579999999999987665521 11112334555556666777887776
No 6
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=5.70 E-value=3.2e+02 Score=20.56 Aligned_cols=31 Identities=6% Similarity=0.045 Sum_probs=15.5
Q ss_pred HHHHHHhcccCChhHHHHHHHHHHhhheeee
Q 041591 151 LFSYFLNKQKFTPYIVNCLVLLTISSTLLVF 181 (306)
Q Consensus 151 iFs~~i~~qKfT~~iiNsVVLLT~sa~lL~l 181 (306)
+...+..|.+-.....-+.++..++..+++.
T Consensus 278 ~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 308 (417)
T d1pv7a_ 278 FAPLIINRIGGKNALLLAGTIMSVRIIGSSF 308 (417)
T ss_dssp THHHHHHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhcccccccchhhhHHHHHHhhhcccc
Confidence 3344444544444455555555555555443
No 7
>d1eysl_ f.26.1.1 (L:) L (light) subunit {Thermochromatium tepidum [TaxId: 1050]}
Probab=4.94 E-value=3.5e+02 Score=23.08 Aligned_cols=89 Identities=16% Similarity=0.250 Sum_probs=55.5
Q ss_pred hhhhhhhHHHHHHHhcccCChhHHHHHHHHHHhhheeeeeC-------CCCCCCCcccc-------ceeeeeehhhHHHH
Q 041591 143 ASQLAFNSLFSYFLNKQKFTPYIVNCLVLLTISSTLLVFQN-------DSENSTGVSKR-------KYAIGFILEAFTAI 208 (306)
Q Consensus 143 atQLaFtaiFs~~i~~qKfT~~iiNsVVLLT~sa~lL~l~s-------~sd~~~g~s~~-------kY~iGf~~~tf~~V 208 (306)
.++|=+|.-|++=.-..--||+-.-||+.+=-|+.++|+|- ..++.++++.. +-.+||-..+-. +
T Consensus 159 f~HLDWt~~fs~~ygN~~YNPFHmLsIaflygsall~AmHGatIla~~~~~~~~~~~~~e~~~~F~r~~~G~~~~~~~-I 237 (280)
T d1eysl_ 159 LSHLDWVSNVGYQFLHFHYNPAHMLAISFFFTNCLALSMHGSLILSVTNPQRGEPVKTSEHENTFFRDIVGYSIGALA-I 237 (280)
T ss_dssp THHHHHHHHHHGGGSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTCCCCCHHHHHHHHHHHHSCCCCHHH-H
T ss_pred hhHhhHHHHHHHHhhhheeCHHHHHHHHHHHHhHHHHHhhhhhheeeecCCCCccccchhHHHHHHHHHHhhccchhH-H
Confidence 46888899999877668889999999999988888888872 11111222221 123343331111 2
Q ss_pred HHHHHhHHHHHHHHHhhhhhcccC
Q 041591 209 LDMVLYPYFAASCAILVGLFVSRE 232 (306)
Q Consensus 209 lemQi~~s~vAT~~~~VGl~asge 232 (306)
=..-......+..-..+|++.||-
T Consensus 238 Hr~~~~~a~~~~~~~~igI~lsG~ 261 (280)
T d1eysl_ 238 HRLGLFLALSAAFWSAVCILISGP 261 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTBTT
T ss_pred HHHHHHHHHHHHHHhheEEEEeCC
Confidence 223344555566777788888885
No 8
>d1t0ga_ d.120.1.2 (A:) Putative steroid binding protein AT2G24940 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=4.39 E-value=1.2e+02 Score=22.40 Aligned_cols=26 Identities=15% Similarity=0.400 Sum_probs=20.9
Q ss_pred HHHHhhccC---CceEEeecchhhhhhhh
Q 041591 237 KREMEEYKL---GKLYAIGSTGLIFETSS 262 (306)
Q Consensus 237 ~~E~~~F~~---G~~~~vG~vGlIf~vSS 262 (306)
++|.++|.. ++...|++-|.||-||+
T Consensus 14 ~eeL~~ydG~~~~~piyvAi~G~VyDVt~ 42 (109)
T d1t0ga_ 14 AEQLSQYNGTDESKPIYVAIKGRVFDVTT 42 (109)
T ss_dssp HHHHTTCSSCSSSCCCEEEETTEEEECGG
T ss_pred HHHHHHcCCCCCCccEEEEECCEEEEccC
Confidence 678888843 34489999999999995
No 9
>d4htci_ g.3.15.2 (I:) Hirudin {Leech (Hirudo medicinalis) [TaxId: 6421]}
Probab=4.21 E-value=93 Score=21.31 Aligned_cols=10 Identities=10% Similarity=0.381 Sum_probs=5.8
Q ss_pred ccCccchHHH
Q 041591 230 SREWVNLKRE 239 (306)
Q Consensus 230 sgef~~l~~E 239 (306)
.|||.+||+|
T Consensus 53 ~gDFeeIPee 62 (65)
T d4htci_ 53 NGDFEEIPEE 62 (65)
T ss_dssp CCCCCCCCGG
T ss_pred CCCcccCcHH
Confidence 3566666655
No 10
>d1ex4a1 b.34.7.1 (A:223-270) DNA-binding domain of retroviral integrase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=3.40 E-value=1.3e+02 Score=19.65 Aligned_cols=12 Identities=50% Similarity=1.013 Sum_probs=8.0
Q ss_pred hheeecCCcchh
Q 041591 42 RQYYDKGGNSKW 53 (306)
Q Consensus 42 R~Yf~~GG~skW 53 (306)
|.||..|.+-.|
T Consensus 2 rVYyr~~~dp~W 13 (48)
T d1ex4a1 2 RVYYRDSRNSLW 13 (48)
T ss_dssp EEEECCSSCCCC
T ss_pred eEEEecCCCccc
Confidence 567777666666
Done!