BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041592
(364 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P70|A Chain A, Bombyx Mori Pheromone Binding Protein Bound To Bell Pepper
Odorant
pdb|2P71|A Chain A, Bombyx Mori Pheromone Binding Protein Bound To
Iodohexadecane
Length = 132
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 127 GTVISFSKQLLNHKTTVSRIVSLL-GDEKSTEKNLSKCIYTVGIGS 171
G + F+K+ +T +++ ++ G EKST N KCI+T+G+ +
Sbjct: 71 GNAMEFAKKHGADETMAQQLIDIVHGCEKSTPANDDKCIWTLGVAT 116
>pdb|1GM0|A Chain A, A Form Of The Pheromone-Binding Protein From Bombyx Mori
pdb|1LS8|A Chain A, Nmr Structure Of The Unliganded Bombyx Mori Pheromone-
Binding Protein At Physiological Ph
Length = 142
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 127 GTVISFSKQLLNHKTTVSRIVSLL-GDEKSTEKNLSKCIYTVGIGS 171
G + F+K+ +T +++ ++ G EKST N KCI+T+G+ +
Sbjct: 71 GNAMEFAKKHGADETMAQQLIDIVHGCEKSTPANDDKCIWTLGVAT 116
>pdb|1DQE|A Chain A, Bombyx Mori Pheromone Binding Protein
pdb|1DQE|B Chain B, Bombyx Mori Pheromone Binding Protein
Length = 137
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 127 GTVISFSKQLLNHKTTVSRIVSLL-GDEKSTEKNLSKCIYTVGIGS 171
G + F+K+ +T +++ ++ G EKST N KCI+T+G+ +
Sbjct: 71 GNAMEFAKKHGADETMAQQLIDIVHGCEKSTPANDDKCIWTLGVAT 116
>pdb|2FJY|A Chain A, Crystal Structure Of B-Form Bombyx Mori Pheromone Binding
Protein
pdb|2FJY|B Chain B, Crystal Structure Of B-Form Bombyx Mori Pheromone Binding
Protein
Length = 142
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 127 GTVISFSKQLLNHKTTVSRIVSLL-GDEKSTEKNLSKCIYTVGIGS 171
G + F+K+ +T +++ ++ G EKST N KCI+T+G+ +
Sbjct: 71 GNAMEFAKKHGADETMAQQLIDIVHGCEKSTPANDDKCIWTLGVAT 116
>pdb|1XFR|A Chain A, Solution Structure Of The Bombyx Mori Pheromone-Binding
Protein Fragment Bmpbp(1-128) At Ph 6.5
Length = 128
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 127 GTVISFSKQLLNHKTTVSRIVSLL-GDEKSTEKNLSKCIYTVGIGS 171
G + F+K+ +T +++ ++ G EKST N KCI+T+G+ +
Sbjct: 71 GNAMEFAKKHGADETMAQQLIDIVHGCEKSTPANDDKCIWTLGVAT 116
>pdb|2FA3|A Chain A, Hmg-Coa Synthase From Brassica Juncea In Complex With
Acetyl-Coa And Acetyl-Cys117
Length = 450
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 78/206 (37%), Gaps = 27/206 (13%)
Query: 154 KSTEKNLSKCIYTVGIGSNDYINNYLMPQFYPTSRLHMPDQYAALLIEQYSQQLKTLYSY 213
K +K+ ++ +Y + + I+ +F P S L + + Y + +E+ SQQL Y Y
Sbjct: 251 KLVQKSFARLLYNDFLRNASSIDEAAKEKFTPYSSLSLDESYQSRDLEKVSQQLAKTY-Y 309
Query: 214 GARKVALFGIGPIGCTPGNIATYDTNGSLCVDFINKAVQEFNIRLKTLVDNLNHNLQDAK 273
A+ + P P + T SL F +LV N + +L +
Sbjct: 310 DAK------VQPTTLVPKQVGNMYT-ASLYAAFA------------SLVHNKHSDLAGKR 350
Query: 274 FIYVNVYGISSGPLAGL-----QGPNPCCSVANIANNGGILTCIPFSPPCPVRALEVFYD 328
+ + S+ + L Q P ++A++ + GG L P + +E
Sbjct: 351 VVMFSYGSGSTATMFSLRLCENQSPFSLSNIASVMDVGGKLKAR--HEYAPEKFVETMKL 408
Query: 329 ATHPTEAANLVVAGRSYVSLLPSDTH 354
H A V + + LL T+
Sbjct: 409 MEHRYGAKEFVTSKEGILDLLAPGTY 434
>pdb|2F82|A Chain A, Hmg-Coa Synthase From Brassica Juncea In The Apo-Form
pdb|2F9A|A Chain A, Hmg-Coa Synthase From Brassica Juncea In Complex With
F-244
pdb|2FA0|A Chain A, Hmg-coa Synthase From Brassica Juncea In Complex With
Hmg-coa And Covalently Bound To Hmg-coa
Length = 450
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 78/206 (37%), Gaps = 27/206 (13%)
Query: 154 KSTEKNLSKCIYTVGIGSNDYINNYLMPQFYPTSRLHMPDQYAALLIEQYSQQLKTLYSY 213
K +K+ ++ +Y + + I+ +F P S L + + Y + +E+ SQQL Y Y
Sbjct: 251 KLVQKSFARLLYNDFLRNASSIDEAAKEKFTPYSSLSLDESYQSRDLEKVSQQLAKTY-Y 309
Query: 214 GARKVALFGIGPIGCTPGNIATYDTNGSLCVDFINKAVQEFNIRLKTLVDNLNHNLQDAK 273
A+ + P P + T SL F +LV N + +L +
Sbjct: 310 DAK------VQPTTLVPKQVGNMYT-ASLYAAFA------------SLVHNKHSDLAGKR 350
Query: 274 FIYVNVYGISSGPLAGL-----QGPNPCCSVANIANNGGILTCIPFSPPCPVRALEVFYD 328
+ + S+ + L Q P ++A++ + GG L P + +E
Sbjct: 351 VVMFSYGSGSTATMFSLRLCENQSPFSLSNIASVMDVGGKLKAR--HEYAPEKFVETMKL 408
Query: 329 ATHPTEAANLVVAGRSYVSLLPSDTH 354
H A V + + LL T+
Sbjct: 409 MEHRYGAKEFVTSKEGILDLLAPGTY 434
>pdb|1W1Z|A Chain A, Structure Of The Plant Like 5-Amino Laevulinic Acid
Dehydratase From Chlorobium Vibrioforme
pdb|1W1Z|B Chain B, Structure Of The Plant Like 5-Amino Laevulinic Acid
Dehydratase From Chlorobium Vibrioforme
pdb|2C1H|A Chain A, The X-Ray Structure Of Chlorobium Vibrioforme 5-
Aminolaevulinic Acid Dehydratase Complexed With A Diacid
Inhibitor
pdb|2C1H|B Chain B, The X-Ray Structure Of Chlorobium Vibrioforme 5-
Aminolaevulinic Acid Dehydratase Complexed With A Diacid
Inhibitor
Length = 328
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 200 IEQYSQQLKTLYSYGARKVALFGIGPIGCTPGNIATYDTNGSL--CVDFINKAVQEFNIR 257
I++ ++ K LY G + + LFGI P T Y+ NG L + I KAV E I
Sbjct: 63 IDRAVEECKELYDLGIQGIDLFGI-PEQKTEDGSEAYNDNGILQQAIRAIKKAVPELCIM 121
Query: 258 LKTLVD 263
+D
Sbjct: 122 TDVALD 127
>pdb|3TJ0|A Chain A, Crystal Structure Of Influenza B Virus Nucleoprotein
pdb|3TJ0|B Chain B, Crystal Structure Of Influenza B Virus Nucleoprotein
Length = 562
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 33/81 (40%)
Query: 132 FSKQLLNHKTTVSRIVSLLGDEKSTEKNLSKCIYTVGIGSNDYINNYLMPQFYPTSRLHM 191
+ L+ + V RI+ D+K TE K V G + +N FY R
Sbjct: 105 MERNLIQNAHAVERILLAATDDKKTEFQKKKNARDVKEGKEEIDHNKTGGTFYKMVRDDK 164
Query: 192 PDQYAALLIEQYSQQLKTLYS 212
++ + I +++KT+Y
Sbjct: 165 TIYFSPIRITFLKEEVKTMYK 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,885,025
Number of Sequences: 62578
Number of extensions: 460519
Number of successful extensions: 1102
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1100
Number of HSP's gapped (non-prelim): 14
length of query: 364
length of database: 14,973,337
effective HSP length: 100
effective length of query: 264
effective length of database: 8,715,537
effective search space: 2300901768
effective search space used: 2300901768
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)