Query 041595
Match_columns 73
No_of_seqs 102 out of 136
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 14:50:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041595.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041595hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p67_A LAO/AO transport system 80.7 0.61 2.1E-05 33.4 1.5 28 38-65 314-341 (341)
2 3kkj_A Amine oxidase, flavin-c 74.0 2.7 9.4E-05 24.9 2.8 25 27-51 303-327 (336)
3 4dgk_A Phytoene dehydrogenase; 72.1 2.9 9.9E-05 30.1 3.0 27 27-53 467-493 (501)
4 3dh4_A Sodium/glucose cotransp 61.2 7.5 0.00026 29.6 3.5 37 28-64 492-529 (530)
5 3v5u_A Uncharacterized membran 58.1 1.5 5E-05 32.3 -0.8 35 32-66 283-320 (320)
6 3oka_C N-terminal His-affinity 57.6 4.1 0.00014 19.6 1.0 7 61-67 7-13 (21)
7 2xq2_A Sodium/glucose cotransp 57.3 6.8 0.00023 30.2 2.7 20 26-45 543-562 (593)
8 3oc4_A Oxidoreductase, pyridin 41.9 14 0.00047 26.7 2.1 8 57-64 444-451 (452)
9 1vhx_A Putative holliday junct 38.9 16 0.00054 23.9 1.9 16 35-50 123-138 (150)
10 2l6x_A GPR, green-light absorb 36.5 26 0.00088 24.6 2.8 10 56-65 233-242 (243)
11 2v8h_A Beta-alanine synthase; 35.0 28 0.00096 25.6 2.9 16 52-67 456-472 (474)
12 3nd0_A SLL0855 protein; CLC fa 33.3 35 0.0012 26.0 3.3 33 32-64 416-465 (466)
13 2l8s_A Integrin alpha-1; trans 33.1 55 0.0019 18.8 3.4 13 46-58 34-46 (54)
14 2poz_A Putative dehydratase; o 32.4 2.9 9.9E-05 30.4 -2.8 30 27-64 362-391 (392)
15 1u02_A Trehalose-6-phosphate p 31.8 25 0.00086 23.1 2.1 22 39-64 217-238 (239)
16 3e3v_A Regulatory protein RECX 29.5 15 0.0005 24.4 0.6 30 27-64 147-176 (177)
17 2p1j_A POLIII, DNA polymerase 28.8 31 0.0011 22.1 2.1 19 46-64 167-185 (186)
18 4dw8_A Haloacid dehalogenase-l 28.5 22 0.00075 23.2 1.3 11 39-49 260-270 (279)
19 2lck_A Mitochondrial uncouplin 28.4 17 0.00058 24.9 0.7 26 24-49 254-284 (303)
20 2vhh_A CG3027-PA; hydrolase; 2 28.3 12 0.00042 27.6 0.0 12 56-67 393-404 (405)
21 3few_X Colicin S4; cell lysis, 27.4 36 0.0012 27.3 2.5 12 44-55 487-498 (505)
22 3mpo_A Predicted hydrolase of 27.1 11 0.00039 24.6 -0.3 8 57-64 271-278 (279)
23 2gl5_A Putative dehydratase pr 27.1 3.5 0.00012 30.0 -3.1 30 27-64 380-409 (410)
24 2kpt_A Putative secreted prote 26.2 50 0.0017 21.3 2.7 20 44-63 128-147 (148)
25 3ne5_B Cation efflux system pr 26.2 24 0.00081 25.8 1.2 20 47-66 394-413 (413)
26 2vpt_A Lipolytic enzyme; ester 26.1 59 0.002 20.5 3.0 30 32-61 183-212 (215)
27 2pcs_A Conserved protein; stru 24.9 49 0.0017 20.0 2.4 12 53-64 150-161 (162)
28 3b5m_A Uncharacterized protein 24.7 21 0.00072 24.3 0.7 10 55-64 195-204 (205)
29 3i83_A 2-dehydropantoate 2-red 24.4 54 0.0019 22.7 2.8 24 39-64 296-319 (320)
30 2o56_A Putative mandelate race 23.9 5 0.00017 29.2 -2.8 30 27-64 377-406 (407)
31 1vhk_A Hypothetical protein YQ 23.8 40 0.0014 23.8 2.0 16 48-63 251-266 (268)
32 1vry_A Glycine receptor alpha- 23.4 55 0.0019 19.7 2.3 14 34-47 41-54 (76)
33 3lxz_A Glutathione S-transfera 22.9 23 0.00079 22.5 0.6 34 28-64 195-228 (229)
34 2ptf_A Uncharacterized protein 22.5 30 0.001 24.1 1.1 9 56-64 224-232 (233)
35 2ftw_A Dihydropyrimidine amido 22.4 18 0.00063 26.8 0.0 12 56-67 508-519 (521)
36 2yhc_A BAMD, UPF0169 lipoprote 22.0 61 0.0021 20.2 2.4 13 52-64 213-225 (225)
37 3bf2_A Putative lipoprotein; N 21.3 43 0.0015 21.5 1.6 23 42-64 129-151 (152)
38 1l6n_A GAG polyprotein; matrix 21.0 76 0.0026 23.6 3.1 23 41-64 267-289 (289)
39 1q90_R Cytochrome B6-F complex 20.5 83 0.0028 17.5 2.5 27 31-57 18-44 (49)
40 2kvz_A ISPE; structural genomi 20.0 18 0.00062 22.2 -0.4 18 47-64 68-85 (85)
No 1
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=80.72 E-value=0.61 Score=33.37 Aligned_cols=28 Identities=18% Similarity=0.142 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCcccc
Q 041595 38 FGIYLVGEQVYNRVIAPSPSHSHHTHHQ 65 (73)
Q Consensus 38 F~vyva~E~~~~~~~~p~~~~~hh~~~~ 65 (73)
+.-++++|.+++.+..+..|+|||.||.
T Consensus 314 ~~P~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (341)
T 2p67_A 314 LSPRTGLRQLSEFIQTQYFDEGHHHHHH 341 (341)
T ss_dssp SCHHHHHHHHHHHHHC------------
T ss_pred CCHHHHHHHHHHHHhhhcccccccccCC
Confidence 5567788888888878888999988773
No 2
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=73.99 E-value=2.7 Score=24.91 Aligned_cols=25 Identities=0% Similarity=-0.199 Sum_probs=20.1
Q ss_pred ccCChhHHHHHHHHHHHHHHHHhhh
Q 041595 27 ATPGLGIALVAFGIYLVGEQVYNRV 51 (73)
Q Consensus 27 ~~PGlgig~~AF~vyva~E~~~~~~ 51 (73)
++-|=|+..+...+..+++.+.+.+
T Consensus 303 a~~g~gv~~A~~sG~~aA~~I~~~L 327 (336)
T 3kkj_A 303 WCLSGRVEGAWLSGQEAARRLLEHL 327 (336)
T ss_dssp GGTTSSHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCcCHHHHHHHHHHHHHHHHHHh
Confidence 4556678888899999999999854
No 3
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=72.10 E-value=2.9 Score=30.05 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=17.7
Q ss_pred ccCChhHHHHHHHHHHHHHHHHhhhcC
Q 041595 27 ATPGLGIALVAFGIYLVGEQVYNRVIA 53 (73)
Q Consensus 27 ~~PGlgig~~AF~vyva~E~~~~~~~~ 53 (73)
.+||-|+--++-.+..+++.+++.+..
T Consensus 467 t~pG~Gv~ga~~SG~~aA~~il~dL~g 493 (501)
T 4dgk_A 467 THPGAGIPGVIGSAKATAGLMLEDLIG 493 (501)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHhcC
Confidence 578888888888899999999988755
No 4
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=61.24 E-value=7.5 Score=29.56 Aligned_cols=37 Identities=24% Similarity=0.206 Sum_probs=13.7
Q ss_pred cCChhHHHHHHHHHHHHHHHH-hhhcCCCCCCCCCccc
Q 041595 28 TPGLGIALVAFGIYLVGEQVY-NRVIAPSPSHSHHTHH 64 (73)
Q Consensus 28 ~PGlgig~~AF~vyva~E~~~-~~~~~p~~~~~hh~~~ 64 (73)
.|++.++.+.-++.+++-|++ -+++...++.|||+||
T Consensus 492 ~~~~~~~~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~ 529 (530)
T 3dh4_A 492 DRSFNIAAYGIMIVLAVLYTLFWVLYKSGGSPGHHHHH 529 (530)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHTTCC-----------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCC
Confidence 455566655555555555432 3445656667777666
No 5
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=58.09 E-value=1.5 Score=32.27 Aligned_cols=35 Identities=26% Similarity=0.496 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHH-HHHHHh--hhcCCCCCCCCCccccc
Q 041595 32 GIALVAFGIYLV-GEQVYN--RVIAPSPSHSHHTHHQH 66 (73)
Q Consensus 32 gig~~AF~vyva-~E~~~~--~~~~p~~~~~hh~~~~~ 66 (73)
--|++..++|++ |=.+.- ....|-++..||+||+|
T Consensus 283 ~eG~~ll~~Y~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 320 (320)
T 3v5u_A 283 WQGILFLALYIIAIASLRMGGGSLVPRGSRSHHHHHHH 320 (320)
T ss_dssp HHHHHHHHHHHHHHHHSCSSCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccccccccCC
Confidence 345566666666 443221 11233355566666654
No 6
>3oka_C N-terminal His-affinity TAG; GT-B fold, alpha-mannosyltransferase, GDP-MAN binding, trans; HET: GDD; 2.20A {Escherichia coli}
Probab=57.64 E-value=4.1 Score=19.65 Aligned_cols=7 Identities=71% Similarity=1.289 Sum_probs=2.6
Q ss_pred Ccccccc
Q 041595 61 HTHHQHS 67 (73)
Q Consensus 61 h~~~~~~ 67 (73)
|.||.||
T Consensus 7 hhhhhhs 13 (21)
T 3oka_C 7 HHHHHHS 13 (26)
T ss_pred ccccccc
Confidence 3333333
No 7
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=57.35 E-value=6.8 Score=30.24 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=13.9
Q ss_pred hccCChhHHHHHHHHHHHHH
Q 041595 26 QATPGLGIALVAFGIYLVGE 45 (73)
Q Consensus 26 ~~~PGlgig~~AF~vyva~E 45 (73)
..+..+.|+++.|+|-.++=
T Consensus 543 ~~~~~~~i~l~v~~~~~~~~ 562 (593)
T 2xq2_A 543 WVNADAEITLIIFGVMAGVI 562 (593)
T ss_dssp HHCTTTHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHHHHHHHH
Confidence 56777888888887755543
No 8
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=41.88 E-value=14 Score=26.71 Aligned_cols=8 Identities=50% Similarity=1.041 Sum_probs=0.4
Q ss_pred CCCCCccc
Q 041595 57 SHSHHTHH 64 (73)
Q Consensus 57 ~~~hh~~~ 64 (73)
|++||.||
T Consensus 444 ~~~~~~~~ 451 (452)
T 3oc4_A 444 DEGHHHHH 451 (452)
T ss_dssp C-------
T ss_pred cccccccC
Confidence 34666555
No 9
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=38.89 E-value=16 Score=23.88 Aligned_cols=16 Identities=0% Similarity=0.061 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhh
Q 041595 35 LVAFGIYLVGEQVYNR 50 (73)
Q Consensus 35 ~~AF~vyva~E~~~~~ 50 (73)
+=..++.+..|.+++.
T Consensus 123 iD~~AA~iILq~~L~~ 138 (150)
T 1vhx_A 123 IDKMAAVMILQGYLDS 138 (150)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhc
Confidence 3467788889999985
No 10
>2l6x_A GPR, green-light absorbing proteorhodopsin; membrane protein structure, cell-free expre proton transport; HET: LYR; NMR {Uncultured marine gamma PROTEOBACTERIUEBAC31A08}
Probab=36.49 E-value=26 Score=24.58 Aligned_cols=10 Identities=40% Similarity=0.856 Sum_probs=1.2
Q ss_pred CCCCCCcccc
Q 041595 56 PSHSHHTHHQ 65 (73)
Q Consensus 56 ~~~~hh~~~~ 65 (73)
+.+|.|.||+
T Consensus 233 ~~~~~~~~~~ 242 (243)
T 2l6x_A 233 PGGGSHHHHH 242 (243)
T ss_dssp CCC-------
T ss_pred cCCCcccccC
Confidence 3444444443
No 11
>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein, DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase; HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A* 2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A
Probab=34.97 E-value=28 Score=25.61 Aligned_cols=16 Identities=38% Similarity=0.698 Sum_probs=0.9
Q ss_pred cCCCC-CCCCCcccccc
Q 041595 52 IAPSP-SHSHHTHHQHS 67 (73)
Q Consensus 52 ~~p~~-~~~hh~~~~~~ 67 (73)
++... |+.||.||.||
T Consensus 456 ~~~~~~~~~~~~~~~~~ 472 (474)
T 2v8h_A 456 FPGDDDDKHHHHHHHHS 472 (474)
T ss_dssp CC---------------
T ss_pred CCCCccccccccccccC
Confidence 44443 44455555554
No 12
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=33.26 E-value=35 Score=25.97 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHH---------HHHHHhhhcCCC--------CCCCCCccc
Q 041595 32 GIALVAFGIYLV---------GEQVYNRVIAPS--------PSHSHHTHH 64 (73)
Q Consensus 32 gig~~AF~vyva---------~E~~~~~~~~p~--------~~~~hh~~~ 64 (73)
.+.+++.++|++ ||...+++..++ ++.+||+||
T Consensus 416 pl~ia~~iA~~v~~~~~~~~iY~~~l~r~~~~~~~~~~~~~~~~~~~~~~ 465 (466)
T 3nd0_A 416 PLLVTCLVASVVAEALGGKPIYTVLLERTLAKQNRGSLVPRGSGGHHHHH 465 (466)
T ss_dssp HHHHHHHHHHHHHTTSCCCCHHHHHHHHHHTTTTC---------------
T ss_pred HHHHHHHHHHHHHHHhCCCChHHHHHHHHhhhccCCccccCCCCCcccCC
Confidence 445556666665 444555554322 555666555
No 13
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=33.06 E-value=55 Score=18.81 Aligned_cols=13 Identities=8% Similarity=0.212 Sum_probs=7.4
Q ss_pred HHHhhhcCCCCCC
Q 041595 46 QVYNRVIAPSPSH 58 (73)
Q Consensus 46 ~~~~~~~~p~~~~ 58 (73)
.+|+|...+..++
T Consensus 34 GFFKR~~~~~~~~ 46 (54)
T 2l8s_A 34 GFFKRPLKKKMEK 46 (54)
T ss_dssp HHTTSCCSCCCCC
T ss_pred CcccCCCcchhhH
Confidence 4777766555333
No 14
>2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti}
Probab=32.42 E-value=2.9 Score=30.41 Aligned_cols=30 Identities=33% Similarity=0.506 Sum_probs=13.4
Q ss_pred ccCChhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccc
Q 041595 27 ATPGLGIALVAFGIYLVGEQVYNRVIAPSPSHSHHTHH 64 (73)
Q Consensus 27 ~~PGlgig~~AF~vyva~E~~~~~~~~p~~~~~hh~~~ 64 (73)
--||||+-+ -|..++++..+....+||.||
T Consensus 362 ~~PGlGv~~--------d~~~l~~~~~~~~~~~~~~~~ 391 (392)
T 2poz_A 362 NGPGLGAVL--------IKRNIEPYLWASCTEGHHHHH 391 (392)
T ss_dssp CSSBTSCCB--------CHHHHGGGEEEEEC-------
T ss_pred CCCCCCcee--------CHHHHHhccCCcccCccccCC
Confidence 358988542 244555555566777777766
No 15
>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15
Probab=31.84 E-value=25 Score=23.12 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCccc
Q 041595 39 GIYLVGEQVYNRVIAPSPSHSHHTHH 64 (73)
Q Consensus 39 ~vyva~E~~~~~~~~p~~~~~hh~~~ 64 (73)
+|+-++|+++.. .+.+|||.||
T Consensus 217 gV~~~l~~~~~~----~~~~~~~~~~ 238 (239)
T 1u02_A 217 KILKFIEMLGVQ----KKQEGHHHHH 238 (239)
T ss_dssp HHHHHHHHHHHH----HC--------
T ss_pred HHHHHHHHHHHh----cccccccccC
Confidence 456667776653 2445666554
No 16
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=29.49 E-value=15 Score=24.45 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=10.6
Q ss_pred ccCChhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccc
Q 041595 27 ATPGLGIALVAFGIYLVGEQVYNRVIAPSPSHSHHTHH 64 (73)
Q Consensus 27 ~~PGlgig~~AF~vyva~E~~~~~~~~p~~~~~hh~~~ 64 (73)
+-+||...++--+ ++.+- ..| .+.|||.||
T Consensus 147 ~rrGF~~~~I~~v----l~~l~---~~~-~~~~~~~~~ 176 (177)
T 3e3v_A 147 LTKGFSYDIIDTI----IQELD---LIF-DDEGHHHHH 176 (177)
T ss_dssp HHTTCCHHHHHHH----HHHHH---HC-----------
T ss_pred HHCCCCHHHHHHH----HHHCc---CCC-CcccccccC
Confidence 6688887765433 33332 133 456666655
No 17
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=28.82 E-value=31 Score=22.14 Aligned_cols=19 Identities=37% Similarity=0.637 Sum_probs=5.0
Q ss_pred HHHhhhcCCCCCCCCCccc
Q 041595 46 QVYNRVIAPSPSHSHHTHH 64 (73)
Q Consensus 46 ~~~~~~~~p~~~~~hh~~~ 64 (73)
++|.++..-.+.+|||.||
T Consensus 167 ~l~~~l~~~~~~~~~~~~~ 185 (186)
T 2p1j_A 167 QVFLRFVEMMKKEGHHHHH 185 (186)
T ss_dssp HHHHHHTTCC---------
T ss_pred HHHHHHHHHHHhhcccccC
Confidence 3444555555667777665
No 18
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Probab=28.50 E-value=22 Score=23.21 Aligned_cols=11 Identities=27% Similarity=0.528 Sum_probs=5.9
Q ss_pred HHHHHHHHHHh
Q 041595 39 GIYLVGEQVYN 49 (73)
Q Consensus 39 ~vyva~E~~~~ 49 (73)
+|+-++|+++.
T Consensus 260 Gv~~~i~~~~~ 270 (279)
T 4dw8_A 260 GVAEAIERIFN 270 (279)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHh
Confidence 35556666663
No 19
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=28.35 E-value=17 Score=24.93 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=17.2
Q ss_pred hhhccCChhHHHH-----HHHHHHHHHHHHh
Q 041595 24 LRQATPGLGIALV-----AFGIYLVGEQVYN 49 (73)
Q Consensus 24 ~~~~~PGlgig~~-----AF~vyva~E~~~~ 49 (73)
++.+++|++..++ ..+.+++||++-.
T Consensus 254 ~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~ 284 (303)
T 2lck_A 254 PRAFYKGFMPSFLRLGSWNVVMFVTYEQLKR 284 (303)
T ss_dssp THHHHSCCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHhhccHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 5678889887665 2344567787654
No 20
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Probab=28.29 E-value=12 Score=27.62 Aligned_cols=12 Identities=50% Similarity=0.924 Sum_probs=0.0
Q ss_pred CCCCCCcccccc
Q 041595 56 PSHSHHTHHQHS 67 (73)
Q Consensus 56 ~~~~hh~~~~~~ 67 (73)
.|+.||.||.||
T Consensus 393 ~~~~~~~~~~~~ 404 (405)
T 2vhh_A 393 DDKHHHHHHHHS 404 (405)
T ss_dssp ------------
T ss_pred ccccccccccCC
Confidence 455566666665
No 21
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=27.37 E-value=36 Score=27.31 Aligned_cols=12 Identities=17% Similarity=0.556 Sum_probs=6.3
Q ss_pred HHHHHhhhcCCC
Q 041595 44 GEQVYNRVIAPS 55 (73)
Q Consensus 44 ~E~~~~~~~~p~ 55 (73)
+|++-+.++.|.
T Consensus 487 VeKiNnel~~~~ 498 (505)
T 3few_X 487 ADALNKEIIKPA 498 (505)
T ss_dssp HHHHHHHTSCCC
T ss_pred HHHHHHHhcCcc
Confidence 345555556664
No 22
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0
Probab=27.14 E-value=11 Score=24.62 Aligned_cols=8 Identities=50% Similarity=1.057 Sum_probs=0.0
Q ss_pred CCCCCccc
Q 041595 57 SHSHHTHH 64 (73)
Q Consensus 57 ~~~hh~~~ 64 (73)
++|||.||
T Consensus 271 ~~~~~~~~ 278 (279)
T 3mpo_A 271 NEGHHHHH 278 (279)
T ss_dssp --------
T ss_pred ccCccccC
Confidence 34555554
No 23
>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*
Probab=27.11 E-value=3.5 Score=30.04 Aligned_cols=30 Identities=37% Similarity=0.636 Sum_probs=12.1
Q ss_pred ccCChhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccc
Q 041595 27 ATPGLGIALVAFGIYLVGEQVYNRVIAPSPSHSHHTHH 64 (73)
Q Consensus 27 ~~PGlgig~~AF~vyva~E~~~~~~~~p~~~~~hh~~~ 64 (73)
--||||+-+ =|..++++.-..+..+||.||
T Consensus 380 ~~PGlGv~~--------d~~~l~~~~~~~~~~~~~~~~ 409 (410)
T 2gl5_A 380 EQPGLGQEL--------NDEVVKEYLAYVIKEGHHHHH 409 (410)
T ss_dssp CSSBTSCCB--------CHHHHTTTEEEEEC-------
T ss_pred CCCcCCccc--------CHHHHHhcccccccccccccC
Confidence 358988643 234444543444556666655
No 24
>2kpt_A Putative secreted protein; methods development, alpha/beta, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum}
Probab=26.22 E-value=50 Score=21.33 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=8.0
Q ss_pred HHHHHhhhcCCCCCCCCCcc
Q 041595 44 GEQVYNRVIAPSPSHSHHTH 63 (73)
Q Consensus 44 ~E~~~~~~~~p~~~~~hh~~ 63 (73)
+..++..-+.|...+.||.|
T Consensus 128 i~~~l~ge~~~~~~~~~~~~ 147 (148)
T 2kpt_A 128 VGSSSSSSSGSSSLEHHHHH 147 (148)
T ss_dssp HHTTCCSCCCSCCCCCCCCC
T ss_pred HHHHHcCCCCCCcchhcccC
Confidence 33334332344444444444
No 25
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=26.16 E-value=24 Score=25.82 Aligned_cols=20 Identities=40% Similarity=0.791 Sum_probs=3.9
Q ss_pred HHhhhcCCCCCCCCCccccc
Q 041595 47 VYNRVIAPSPSHSHHTHHQH 66 (73)
Q Consensus 47 ~~~~~~~p~~~~~hh~~~~~ 66 (73)
.+.+|..++-.|-||.||.|
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~ 413 (413)
T 3ne5_B 394 ALERMRSESATHAHHHHHHH 413 (413)
T ss_dssp HHHTTCC-------------
T ss_pred hhhhhcccccccccccccCC
Confidence 35555566666777766654
No 26
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=26.07 E-value=59 Score=20.47 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 041595 32 GIALVAFGIYLVGEQVYNRVIAPSPSHSHH 61 (73)
Q Consensus 32 gig~~AF~vyva~E~~~~~~~~p~~~~~hh 61 (73)
|-...|=.++=.++++++....++.-..||
T Consensus 183 G~~~~a~~i~~~l~~~l~~~~~~~~~~~~~ 212 (215)
T 2vpt_A 183 GYKKIANIWYKYTIDILRALAGETQLEHHH 212 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHhccCchhhhhcc
Confidence 555566666667777787754444333333
No 27
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=24.85 E-value=49 Score=19.97 Aligned_cols=12 Identities=42% Similarity=0.739 Sum_probs=3.0
Q ss_pred CCCCCCCCCccc
Q 041595 53 APSPSHSHHTHH 64 (73)
Q Consensus 53 ~p~~~~~hh~~~ 64 (73)
.+.-++|||.||
T Consensus 150 ~~~~~~~~~~~~ 161 (162)
T 2pcs_A 150 KQEASEGHHHHH 161 (162)
T ss_dssp -------CEEEC
T ss_pred CccccccccccC
Confidence 344556666655
No 28
>3b5m_A Uncharacterized protein; structural genomics, unknown function, flavoprotein, PSI-2, structure initiative; 1.21A {Rhodopirellula baltica}
Probab=24.74 E-value=21 Score=24.25 Aligned_cols=10 Identities=60% Similarity=0.876 Sum_probs=0.4
Q ss_pred CCCCCCCccc
Q 041595 55 SPSHSHHTHH 64 (73)
Q Consensus 55 ~~~~~hh~~~ 64 (73)
+-++|||.||
T Consensus 195 ~~~~~~~~~~ 204 (205)
T 3b5m_A 195 SISEGHHHHH 204 (205)
T ss_dssp C---------
T ss_pred hhcccccccC
Confidence 3445665554
No 29
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=24.39 E-value=54 Score=22.66 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCccc
Q 041595 39 GIYLVGEQVYNRVIAPSPSHSHHTHH 64 (73)
Q Consensus 39 ~vyva~E~~~~~~~~p~~~~~hh~~~ 64 (73)
...-++|.-..+ ++=+++|||.||
T Consensus 296 ~~l~~~e~~~~~--~~~~~~~~~~~~ 319 (320)
T 3i83_A 296 ALMKLLELRTSK--SLWGNEGHHHHH 319 (320)
T ss_dssp HHHHHHHHHHTC--CTTCC-------
T ss_pred HHHHHHHHHHhh--cccccCcccccC
Confidence 334445555543 555777887776
No 30
>2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium}
Probab=23.86 E-value=5 Score=29.21 Aligned_cols=30 Identities=30% Similarity=0.563 Sum_probs=11.0
Q ss_pred ccCChhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccc
Q 041595 27 ATPGLGIALVAFGIYLVGEQVYNRVIAPSPSHSHHTHH 64 (73)
Q Consensus 27 ~~PGlgig~~AF~vyva~E~~~~~~~~p~~~~~hh~~~ 64 (73)
--||||+-+ -|..++++.-.....|||.||
T Consensus 377 ~~PGlGv~~--------d~~~l~~~~~~~~~~~~~~~~ 406 (407)
T 2o56_A 377 ELPGIGQEL--------TEETMKKSPTITVKEGHHHHH 406 (407)
T ss_dssp CSSBTSCCB--------CHHHHHHSCEEEEC-------
T ss_pred CCCCCCcee--------CHHHHHhccCCcCCCccccCC
Confidence 358988543 233344433333445665554
No 31
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Probab=23.83 E-value=40 Score=23.82 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=2.0
Q ss_pred HhhhcCCCCCCCCCcc
Q 041595 48 YNRVIAPSPSHSHHTH 63 (73)
Q Consensus 48 ~~~~~~p~~~~~hh~~ 63 (73)
+..+....+..+||.|
T Consensus 251 ~~~~~~~~~~~~~~~~ 266 (268)
T 1vhk_A 251 TELLRGDQEGGSHHHH 266 (268)
T ss_dssp HHTCC-----------
T ss_pred hhhhccCccCCccccc
Confidence 3434333333333333
No 32
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=23.42 E-value=55 Score=19.67 Aligned_cols=14 Identities=14% Similarity=0.007 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 041595 34 ALVAFGIYLVGEQV 47 (73)
Q Consensus 34 g~~AF~vyva~E~~ 47 (73)
+--+|+...-+|++
T Consensus 41 ~C~~FVF~aLlEya 54 (76)
T 1vry_A 41 VCLLFVFSALLEYA 54 (76)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33445555555543
No 33
>3lxz_A Glutathione S-transferase family protein; structural genomics, PP0183, PSI-2, protein structure initiative; 1.76A {Pseudomonas putida} PDB: 3pr8_A*
Probab=22.87 E-value=23 Score=22.52 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=10.8
Q ss_pred cCChhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccc
Q 041595 28 TPGLGIALVAFGIYLVGEQVYNRVIAPSPSHSHHTHH 64 (73)
Q Consensus 28 ~PGlgig~~AF~vyva~E~~~~~~~~p~~~~~hh~~~ 64 (73)
.|++.-.+..--.. ++.+++++.+.+ -+|||.||
T Consensus 195 ~p~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~ 228 (229)
T 3lxz_A 195 NPHMPRILADKEAS--MPAFMEMIRSGK-REGHHHHH 228 (229)
T ss_dssp CTTHHHHHHHHHHH--HHHHHHHHHHC----------
T ss_pred ChhHHHHHhhHHHH--HHHHHHHHHhCc-cccccccC
Confidence 45555444433322 334454444443 34555444
No 34
>2ptf_A Uncharacterized protein MTH_863; structural genomics, unknown function, PSI-2, protein struct initiative; HET: FMN; 2.35A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: b.45.1.4
Probab=22.54 E-value=30 Score=24.14 Aligned_cols=9 Identities=56% Similarity=0.892 Sum_probs=0.0
Q ss_pred CCCCCCccc
Q 041595 56 PSHSHHTHH 64 (73)
Q Consensus 56 ~~~~hh~~~ 64 (73)
.++|||.||
T Consensus 224 ~~~~~~~~~ 232 (233)
T 2ptf_A 224 ISEGHHHHH 232 (233)
T ss_dssp ---------
T ss_pred hhccccccC
Confidence 455666554
No 35
>2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel, beta-sandwich; HET: KCX; 2.05A {Dictyostelium discoideum} SCOP: b.92.1.3 c.1.9.6
Probab=22.41 E-value=18 Score=26.75 Aligned_cols=12 Identities=50% Similarity=0.924 Sum_probs=0.0
Q ss_pred CCCCCCcccccc
Q 041595 56 PSHSHHTHHQHS 67 (73)
Q Consensus 56 ~~~~hh~~~~~~ 67 (73)
.|+.||.||.||
T Consensus 508 ~~~~~~~~~~~~ 519 (521)
T 2ftw_A 508 DDKHHHHHHHHS 519 (521)
T ss_dssp ------------
T ss_pred cccccccccccC
Confidence 455566666665
No 36
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=22.05 E-value=61 Score=20.21 Aligned_cols=13 Identities=31% Similarity=0.552 Sum_probs=6.5
Q ss_pred cCCCCCCCCCccc
Q 041595 52 IAPSPSHSHHTHH 64 (73)
Q Consensus 52 ~~p~~~~~hh~~~ 64 (73)
..|++.+.||.||
T Consensus 213 ~~~~~~~~~~~~~ 225 (225)
T 2yhc_A 213 NSSNTLEHHHHHH 225 (225)
T ss_dssp CCSCCCCCTTCCC
T ss_pred hCCCchhhcccCC
Confidence 3555555555443
No 37
>3bf2_A Putative lipoprotein; NESG, MR36A, structural genomics, PSI-2, protein structure initiative; 2.60A {Neisseria meningitidis FAM18}
Probab=21.31 E-value=43 Score=21.45 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=11.4
Q ss_pred HHHHHHHhhhcCCCCCCCCCccc
Q 041595 42 LVGEQVYNRVIAPSPSHSHHTHH 64 (73)
Q Consensus 42 va~E~~~~~~~~p~~~~~hh~~~ 64 (73)
-+++++..++..-+.+-.||.||
T Consensus 129 d~A~qIvrrL~~~~~~~~~~~~~ 151 (152)
T 3bf2_A 129 DAAEQIVRRLTFLKAELEHHHHH 151 (152)
T ss_dssp HHHHHHHHHHHTTTTC-------
T ss_pred HHHHHHHHHHHhhhHhhhhhccC
Confidence 46788888886666555555544
No 38
>1l6n_A GAG polyprotein; matrix, capsid, maturation, viral protein; NMR {Human immunodeficiency virus 1} SCOP: a.61.1.1 a.73.1.1
Probab=20.97 E-value=76 Score=23.62 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=15.4
Q ss_pred HHHHHHHHhhhcCCCCCCCCCccc
Q 041595 41 YLVGEQVYNRVIAPSPSHSHHTHH 64 (73)
Q Consensus 41 yva~E~~~~~~~~p~~~~~hh~~~ 64 (73)
.++..++- ++++|-+.-.||.||
T Consensus 267 IlgL~kiv-rmy~p~si~~~~~~~ 289 (289)
T 1l6n_A 267 ILGLNKIV-RMYSPTSILHHHHHH 289 (289)
T ss_dssp HHHHHHHH-HHSSSSCCCCCCCCC
T ss_pred HHHHHHHh-hhcCCccccccccCC
Confidence 45666665 678888776666654
No 39
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=20.55 E-value=83 Score=17.50 Aligned_cols=27 Identities=11% Similarity=-0.004 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCCCC
Q 041595 31 LGIALVAFGIYLVGEQVYNRVIAPSPS 57 (73)
Q Consensus 31 lgig~~AF~vyva~E~~~~~~~~p~~~ 57 (73)
+-+|++++++....--+...+.+|.+.
T Consensus 18 l~~G~~a~~a~~~~~P~v~ffvpP~~g 44 (49)
T 1q90_R 18 ILAGGAGLPITTLALGYGAFFVPPSSG 44 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCC---
T ss_pred HHHHHHHHHHHHHHHhhheeecCCccC
Confidence 334455554443333333344577643
No 40
>2kvz_A ISPE; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Listeria monocytogenes}
Probab=20.02 E-value=18 Score=22.17 Aligned_cols=18 Identities=28% Similarity=0.628 Sum_probs=9.7
Q ss_pred HHhhhcCCCCCCCCCccc
Q 041595 47 VYNRVIAPSPSHSHHTHH 64 (73)
Q Consensus 47 ~~~~~~~p~~~~~hh~~~ 64 (73)
+|++...|..++.||.||
T Consensus 68 VY~k~~~~~~~~~~~~~~ 85 (85)
T 2kvz_A 68 IYQKKAPEQALEHHHHHH 85 (85)
T ss_dssp EEEECSCTTTCCCCCCCC
T ss_pred EEecCCCCccccccccCC
Confidence 455555555555555443
Done!