Query 041595
Match_columns 73
No_of_seqs 102 out of 136
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 14:51:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041595.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041595hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uqra_ c.23.13.1 (A:) Type II 31.6 15 0.0011 22.9 2.6 30 5-35 102-131 (146)
2 d1h05a_ c.23.13.1 (A:) Type II 28.9 6.2 0.00045 24.8 0.2 39 6-49 102-140 (144)
3 d1vh4a_ b.80.6.1 (A:) Stabiliz 28.8 7.5 0.00055 26.5 0.7 15 5-19 32-46 (413)
4 d2c4va1 c.23.13.1 (A:1-158) Ty 28.6 19 0.0014 22.8 2.7 29 5-34 104-132 (158)
5 d2di0a1 a.5.2.4 (A:8-70) Activ 21.5 22 0.0016 19.7 1.7 19 22-40 11-29 (63)
6 d1gtza_ c.23.13.1 (A:) Type II 20.2 10 0.00076 24.0 0.1 28 6-34 108-135 (149)
7 d2r7ka1 c.30.1.8 (A:1-123) 5-f 17.8 30 0.0022 21.4 1.8 16 36-51 93-108 (123)
8 d1vf5c3 f.23.23.1 (C:250-286) 17.1 55 0.004 16.3 2.5 17 33-49 7-23 (37)
9 d1vl6a1 c.2.1.7 (A:155-376) Ma 15.9 15 0.0011 24.3 -0.0 12 27-38 163-174 (222)
10 d2r85a1 c.30.1.8 (A:1-99) 5-fo 15.4 24 0.0018 21.0 0.9 14 36-49 70-83 (99)
No 1
>d1uqra_ c.23.13.1 (A:) Type II 3-dehydroquinate dehydratase {Actinobacillus pleuropneumoniae [TaxId: 715]}
Probab=31.62 E-value=15 Score=22.94 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=23.2
Q ss_pred cCCCcchhhhhcCCCccchhhhccCChhHHH
Q 041595 5 GEFFRRRDGWRKHPLLTSNLRQATPGLGIAL 35 (73)
Q Consensus 5 ~DPW~R~EaWRy~p~f~~~~~~~~PGlgig~ 35 (73)
.+|++| |.||.+..++..-...+-|||+--
T Consensus 102 SNi~~R-E~fR~~S~i~~~~~g~i~G~G~~~ 131 (146)
T d1uqra_ 102 SNVHAR-EPFRHHSYLSDVAKGVICGLGAKG 131 (146)
T ss_dssp SCGGGS-CGGGSCCSSGGGSSEEEESSTTHH
T ss_pred cCcccc-ccccccccccccceEEEecCCHHH
Confidence 356666 899999998877777788888743
No 2
>d1h05a_ c.23.13.1 (A:) Type II 3-dehydroquinate dehydratase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=28.87 E-value=6.2 Score=24.83 Aligned_cols=39 Identities=26% Similarity=0.395 Sum_probs=25.5
Q ss_pred CCCcchhhhhcCCCccchhhhccCChhHHHHHHHHHHHHHHHHh
Q 041595 6 EFFRRRDGWRKHPLLTSNLRQATPGLGIALVAFGIYLVGEQVYN 49 (73)
Q Consensus 6 DPW~R~EaWRy~p~f~~~~~~~~PGlgig~~AF~vyva~E~~~~ 49 (73)
++++| |.+|.+..++.--...+-|||+ .+=.+|++.+.+
T Consensus 102 Ni~~R-E~fR~~S~is~~~~g~I~G~G~----~gY~lAl~~l~~ 140 (144)
T d1h05a_ 102 NVHAR-EEFRRHSYLSPIATGVIVGLGI----QGYLLALRYLAE 140 (144)
T ss_dssp CGGGS-CGGGGCCSSGGGSSEEEESSTT----HHHHHHHHHHHH
T ss_pred Ccccc-ccccccccccccceEEEecCCh----HHHHHHHHHHHH
Confidence 45655 7899999988665667777765 333445555544
No 3
>d1vh4a_ b.80.6.1 (A:) Stabilizer of iron transporter SufD {Escherichia coli [TaxId: 562]}
Probab=28.81 E-value=7.5 Score=26.50 Aligned_cols=15 Identities=33% Similarity=0.778 Sum_probs=12.0
Q ss_pred cCCCcchhhhhcCCC
Q 041595 5 GEFFRRRDGWRKHPL 19 (73)
Q Consensus 5 ~DPW~R~EaWRy~p~ 19 (73)
+=|=.|.|+|||.+.
T Consensus 32 GlPt~k~E~WKyT~l 46 (413)
T d1vh4a_ 32 GLPTRKHENWKYTPL 46 (413)
T ss_dssp CCCCTTSTTCTTCCC
T ss_pred CCCCCCCcCccCCCH
Confidence 446678999999984
No 4
>d2c4va1 c.23.13.1 (A:1-158) Type II 3-dehydroquinate dehydratase {Helicobacter pylori [TaxId: 210]}
Probab=28.56 E-value=19 Score=22.79 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=21.4
Q ss_pred cCCCcchhhhhcCCCccchhhhccCChhHH
Q 041595 5 GEFFRRRDGWRKHPLLTSNLRQATPGLGIA 34 (73)
Q Consensus 5 ~DPW~R~EaWRy~p~f~~~~~~~~PGlgig 34 (73)
.++++| |.||.+..++.--....-|||+-
T Consensus 104 SNi~~R-E~fR~~S~is~~~~g~I~G~G~~ 132 (158)
T d2c4va1 104 TNIQAR-EEFRKNSYTGAACGGVIMGFGPL 132 (158)
T ss_dssp SCTTSS-CGGGSCCTTTTTSSEEEESSTTH
T ss_pred cCcccc-ccccccccccccceEEEecCChH
Confidence 367777 88999998886666666677653
No 5
>d2di0a1 a.5.2.4 (A:8-70) Activating signal cointegrator 1 complex subunit 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.54 E-value=22 Score=19.67 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=16.3
Q ss_pred chhhhccCChhHHHHHHHH
Q 041595 22 SNLRQATPGLGIALVAFGI 40 (73)
Q Consensus 22 ~~~~~~~PGlgig~~AF~v 40 (73)
.+++.+||=||-||+..+.
T Consensus 11 ~qV~Dl~PdLG~GFi~~~L 29 (63)
T d2di0a1 11 SQVKDLLPDLGEGFILACL 29 (63)
T ss_dssp HHHHHHCCSSCHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHH
Confidence 4678999999999998775
No 6
>d1gtza_ c.23.13.1 (A:) Type II 3-dehydroquinate dehydratase {Streptomyces coelicolor [TaxId: 1902]}
Probab=20.21 E-value=10 Score=24.00 Aligned_cols=28 Identities=18% Similarity=0.485 Sum_probs=20.6
Q ss_pred CCCcchhhhhcCCCccchhhhccCChhHH
Q 041595 6 EFFRRRDGWRKHPLLTSNLRQATPGLGIA 34 (73)
Q Consensus 6 DPW~R~EaWRy~p~f~~~~~~~~PGlgig 34 (73)
++++ ||+||.+..++.--....-|||+-
T Consensus 108 Ni~~-RE~fR~~S~is~~~~g~I~G~G~~ 135 (149)
T d1gtza_ 108 NIHQ-REPFRHHSYVSQRADGVVAGCGVQ 135 (149)
T ss_dssp CGGG-SCGGGSCCSGGGTCSEEEESSTTH
T ss_pred Cccc-cccccccccccccceEEEecCChH
Confidence 3444 589999999887666677787763
No 7
>d2r7ka1 c.30.1.8 (A:1-123) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=17.80 E-value=30 Score=21.38 Aligned_cols=16 Identities=25% Similarity=0.125 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHhhh
Q 041595 36 VAFGIYLVGEQVYNRV 51 (73)
Q Consensus 36 ~AF~vyva~E~~~~~~ 51 (73)
..|++||++|.+-+.+
T Consensus 93 gSfv~Y~G~~~ie~~~ 108 (123)
T d2r7ka1 93 GSFIAYCGLDNVENSF 108 (123)
T ss_dssp HHHHHHHCHHHHHHTC
T ss_pred CCeeeeecHHHHHhcC
Confidence 6899999999987544
No 8
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=17.14 E-value=55 Score=16.34 Aligned_cols=17 Identities=18% Similarity=0.086 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 041595 33 IALVAFGIYLVGEQVYN 49 (73)
Q Consensus 33 ig~~AF~vyva~E~~~~ 49 (73)
.|+.+|.+.+.+-|++-
T Consensus 7 ~gl~~F~~~v~laQi~l 23 (37)
T d1vf5c3 7 KWMIAFICLVMLAQLML 23 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47788999988888763
No 9
>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}
Probab=15.88 E-value=15 Score=24.33 Aligned_cols=12 Identities=33% Similarity=0.307 Sum_probs=9.9
Q ss_pred ccCChhHHHHHH
Q 041595 27 ATPGLGIALVAF 38 (73)
Q Consensus 27 ~~PGlgig~~AF 38 (73)
.|||+|.|.++-
T Consensus 163 iFPGiglGal~~ 174 (222)
T d1vl6a1 163 AFPGIMKGAVEK 174 (222)
T ss_dssp THHHHHHHHHHH
T ss_pred ecchHHHHHHHh
Confidence 799999997753
No 10
>d2r85a1 c.30.1.8 (A:1-99) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]}
Probab=15.37 E-value=24 Score=21.01 Aligned_cols=14 Identities=36% Similarity=0.031 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHh
Q 041595 36 VAFGIYLVGEQVYN 49 (73)
Q Consensus 36 ~AF~vyva~E~~~~ 49 (73)
..|++||++|.+-+
T Consensus 70 gSfv~Y~G~d~ie~ 83 (99)
T d2r85a1 70 GSFVAHLGIELVEN 83 (99)
T ss_dssp TTHHHHHCHHHHHT
T ss_pred CCEEEEEcHHHHhc
Confidence 57999999998853
Done!