Query 041596
Match_columns 252
No_of_seqs 169 out of 1192
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 14:51:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041596.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041596hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zy9_A Mg2+ transporter MGTE; 23.2 1.1E+02 0.0038 28.0 5.5 27 85-111 410-436 (473)
2 3gp2_B Calcium/calmodulin-depe 12.0 1.9E+02 0.0065 15.0 2.4 13 4-16 4-16 (22)
3 3j1z_P YIIP, cation efflux fam 8.0 9.2E+02 0.031 20.1 8.2 31 86-116 80-110 (306)
4 1vry_A Glycine receptor alpha- 7.4 3.3E+02 0.011 18.5 2.9 26 130-155 38-63 (76)
5 3arc_M Photosystem II reaction 6.0 2.5E+02 0.0084 16.5 1.4 14 97-110 8-21 (36)
6 3mp7_B Preprotein translocase 5.7 6.5E+02 0.022 16.2 4.3 28 44-72 27-54 (61)
7 2ww9_B Protein transport prote 5.3 7.8E+02 0.027 16.8 3.9 26 45-71 45-70 (80)
8 1rh5_B Preprotein translocase 5.1 7.8E+02 0.027 16.5 3.7 28 44-72 31-58 (74)
9 4dve_A Biotin transporter BIOY 4.9 5.7E+02 0.02 20.5 3.5 13 221-233 52-64 (198)
10 2kwz_A Protease NS2-3; NS2 dom 4.8 2.3E+02 0.0078 17.0 0.7 10 95-104 4-13 (40)
No 1
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=23.19 E-value=1.1e+02 Score=27.97 Aligned_cols=27 Identities=26% Similarity=0.091 Sum_probs=11.4
Q ss_pred hHHHHHHHhhHHHHHHHhhhhcHhhhh
Q 041596 85 LFVIVKSFASGVILATGYMHVLPDSFD 111 (252)
Q Consensus 85 ~ls~~~~FaaGV~LataflHLLPea~e 111 (252)
.+.+..++...+++++.+--++|=...
T Consensus 410 ~~~v~~a~~~~~~~a~~~g~~~p~~~~ 436 (473)
T 2zy9_A 410 LPVVGVSLVLIVFFANLVGAMLPFLLR 436 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444433
No 2
>3gp2_B Calcium/calmodulin-dependent protein kinase type II delta chain; metal binding protein, ATP-binding, calmodulin- binding, nucleotide-binding; 1.46A {Homo sapiens}
Probab=12.04 E-value=1.9e+02 Score=15.04 Aligned_cols=13 Identities=38% Similarity=0.330 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHH
Q 041596 4 AARTKLETLITLL 16 (252)
Q Consensus 4 ~~~~~~~~~~~~~ 16 (252)
-||.||+.++.-.
T Consensus 4 NaRRKLK~aIl~~ 16 (22)
T 3gp2_B 4 NARRKLKGAILTT 16 (26)
T ss_pred cHHHHHHHHHHHH
Confidence 3789999776543
No 3
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=8.00 E-value=9.2e+02 Score=20.14 Aligned_cols=31 Identities=13% Similarity=0.086 Sum_probs=20.3
Q ss_pred HHHHHHHhhHHHHHHHhhhhcHhhhhhhcCC
Q 041596 86 FVIVKSFASGVILATGYMHVLPDSFDDLRSP 116 (252)
Q Consensus 86 ls~~~~FaaGV~LataflHLLPea~e~l~~~ 116 (252)
...+-++..|+++...-.-++=|+.+.+-++
T Consensus 80 ~E~l~al~~~~~l~~~~~~i~~eai~~l~~p 110 (306)
T 3j1z_P 80 AEPLAALAQSAFIMGSAFLLLFYGGERLLNP 110 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhheecC
Confidence 4555666666665555555777888887654
No 4
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=7.40 E-value=3.3e+02 Score=18.52 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 041596 130 TFIAMLSAVVTLMVDSFAMSYYKRYC 155 (252)
Q Consensus 130 ~~i~~~Gf~l~~~iE~~~~~~~~~~~ 155 (252)
+++.+..|.+.-++|..+-.|..+++
T Consensus 38 w~~~C~~FVF~aLlEya~V~y~~r~~ 63 (76)
T 1vry_A 38 WLAVCLLFVFSALLEYAAVNFVSRKK 63 (76)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46778889999999998888876543
No 5
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=5.99 E-value=2.5e+02 Score=16.45 Aligned_cols=14 Identities=29% Similarity=0.674 Sum_probs=7.9
Q ss_pred HHHHHhhhhcHhhh
Q 041596 97 ILATGYMHVLPDSF 110 (252)
Q Consensus 97 ~LataflHLLPea~ 110 (252)
++|++++-++|.++
T Consensus 8 fiAt~Lfi~iPt~F 21 (36)
T 3arc_M 8 LIATALFVLVPSVF 21 (36)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555554
No 6
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=5.72 E-value=6.5e+02 Score=16.20 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=17.4
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHhHHHHH
Q 041596 44 DRAAALKFKIIAVCSILVTSMIGVCLPLF 72 (252)
Q Consensus 44 ~~~~~~~lKi~~i~~il~~sllg~~lPl~ 72 (252)
.+++...+|+..+ .+++.+++|-.+-+.
T Consensus 27 ~~Ef~~iak~~~i-G~~i~G~iGf~Ikli 54 (61)
T 3mp7_B 27 WATYKRAAKITGL-GIILIGLIGMLIRIV 54 (61)
T ss_dssp TTHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 4556677777666 455666677666543
No 7
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=5.31 E-value=7.8e+02 Score=16.84 Aligned_cols=26 Identities=15% Similarity=0.379 Sum_probs=15.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhHHHH
Q 041596 45 RAAALKFKIIAVCSILVTSMIGVCLPL 71 (252)
Q Consensus 45 ~~~~~~lKi~~i~~il~~sllg~~lPl 71 (252)
+++...+|+..+ .+++.+++|-.+-+
T Consensus 45 ~Ef~~iak~t~i-G~~imG~IGfiIkL 70 (80)
T 2ww9_B 45 KEYTKIVKAVGI-GFIAVGIIGYAIKL 70 (80)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 334555555554 66667777776544
No 8
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=5.05 E-value=7.8e+02 Score=16.49 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=16.8
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHhHHHHH
Q 041596 44 DRAAALKFKIIAVCSILVTSMIGVCLPLF 72 (252)
Q Consensus 44 ~~~~~~~lKi~~i~~il~~sllg~~lPl~ 72 (252)
.+++...+|+..+ .+++.+++|-.+-+.
T Consensus 31 r~EF~~iak~~~i-G~~imG~IGfiIkli 58 (74)
T 1rh5_B 31 KDEYLAVAKVTAL-GISLLGIIGYIIHVP 58 (74)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 4445666666555 555667777766543
No 9
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=4.91 E-value=5.7e+02 Score=20.48 Aligned_cols=13 Identities=8% Similarity=0.056 Sum_probs=5.6
Q ss_pred chhHHHHHHHHHH
Q 041596 221 TIRPLIAALCFHQ 233 (252)
Q Consensus 221 ~i~~L~~AI~~Hk 233 (252)
++..++++.++=.
T Consensus 52 tl~V~LaG~~LG~ 64 (198)
T 4dve_A 52 NMGIMMAGGLLGP 64 (198)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCh
Confidence 3344444444433
No 10
>2kwz_A Protease NS2-3; NS2 domain, viral protein, membrane prote; NMR {Hepatitis c virus}
Probab=4.82 E-value=2.3e+02 Score=17.00 Aligned_cols=10 Identities=50% Similarity=0.584 Sum_probs=6.5
Q ss_pred HHHHHHHhhh
Q 041596 95 GVILATGYMH 104 (252)
Q Consensus 95 GV~LataflH 104 (252)
||++-++++|
T Consensus 4 aiIll~~~~h 13 (40)
T 2kwz_A 4 AVILLTCAIH 13 (40)
T ss_dssp SHHHHHHHSS
T ss_pred eeeeHHHHhC
Confidence 4666677665
Done!