Query 041596
Match_columns 252
No_of_seqs 169 out of 1192
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 14:52:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041596.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041596hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 37.4 40 0.0029 25.0 6.5 21 56-76 120-140 (173)
2 d2axtm1 f.23.35.1 (M:1-36) Pho 8.2 78 0.0057 17.0 1.4 13 98-110 9-21 (36)
3 d2bs2c1 f.21.2.1 (C:1-254) Fum 6.7 3.9E+02 0.028 20.1 5.8 63 83-145 23-94 (254)
4 d1ppjd2 f.23.11.1 (D:196-241) 6.0 1.7E+02 0.012 16.5 2.3 18 44-61 4-21 (46)
5 d1v54l_ f.23.6.1 (L:) Mitochon 5.2 2.9E+02 0.021 15.5 2.9 24 50-75 17-40 (46)
6 d3cx5d2 f.23.11.1 (D:261-307) 4.8 2.3E+02 0.017 16.0 2.3 17 44-60 4-20 (47)
7 d1q90d_ f.32.1.1 (D:) Subunit 3.3 6.4E+02 0.047 17.5 4.4 24 51-74 90-113 (156)
8 d1r3jc_ f.14.1.1 (C:) Potassiu 2.7 6.5E+02 0.047 15.5 3.6 26 128-153 70-96 (103)
9 d1l7va_ f.22.1.1 (A:) ABC tran 2.7 1.1E+03 0.077 18.0 7.7 63 63-139 254-316 (324)
10 d2axte1 f.23.38.1 (E:3-84) Cyt 2.6 6.9E+02 0.05 15.4 3.6 26 47-72 16-41 (82)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=37.44 E-value=40 Score=24.98 Aligned_cols=21 Identities=19% Similarity=0.505 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhHHHHHhccc
Q 041596 56 VCSILVTSMIGVCLPLFTCAV 76 (252)
Q Consensus 56 i~~il~~sllg~~lPl~~~~~ 76 (252)
++.+.+++++|+.+|++.+|+
T Consensus 120 ~~~~~ia~~~G~~lPlll~kl 140 (173)
T d2yvxa3 120 VLIVFFANLVGAMLPFLLRRL 140 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334455566666666665554
No 2
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.16 E-value=78 Score=17.03 Aligned_cols=13 Identities=31% Similarity=0.654 Sum_probs=6.5
Q ss_pred HHHHhhhhcHhhh
Q 041596 98 LATGYMHVLPDSF 110 (252)
Q Consensus 98 LataflHLLPea~ 110 (252)
+|++++-+.|.++
T Consensus 9 iAt~LFilvPt~F 21 (36)
T d2axtm1 9 IATALFVLVPSVF 21 (36)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555443
No 3
>d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex cytochrome b subunit, FrdC {Wolinella succinogenes [TaxId: 844]}
Probab=6.66 E-value=3.9e+02 Score=20.15 Aligned_cols=63 Identities=6% Similarity=-0.149 Sum_probs=33.9
Q ss_pred chhHHHHHHHhhHHHHHHHhhhhc--------HhhhhhhcCCCCCC-CCCCcchHHHHHHHHHHHHHHHHHH
Q 041596 83 KDLFVIVKSFASGVILATGYMHVL--------PDSFDDLRSPCLPD-HPWKEFPFTTFIAMLSAVVTLMVDS 145 (252)
Q Consensus 83 ~~~ls~~~~FaaGV~LataflHLL--------Pea~e~l~~~~~~~-~~~~~yP~~~~i~~~Gf~l~~~iE~ 145 (252)
+-.+..+.+++|=++..-.+.||+ ||+++....-.... .+....|+-..+..++++..+++--
T Consensus 23 ~~~l~~l~slTGlvL~lFl~~Hm~~n~~il~g~eafn~~a~~l~~~~~~~~~~p~l~~i~~~~l~~~ll~H~ 94 (254)
T d2bs2c1 23 PAKLDWWQSATGLFLGLFMIGHMFFVSTILLGDNVMLWVTKKFELDFIFEGGKPIVVSFLAAFVFAVFIAHA 94 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCHHHHHHHHHHTTCTTTSSSCCTHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhcccccCCccHHHHHHHHHHHHHHHHHH
Confidence 335666677666666666677776 77776654322110 1112346655555555555555543
No 4
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.02 E-value=1.7e+02 Score=16.47 Aligned_cols=18 Identities=17% Similarity=0.453 Sum_probs=11.8
Q ss_pred ccchhhhHHHHHHHHHHH
Q 041596 44 DRAAALKFKIIAVCSILV 61 (252)
Q Consensus 44 ~~~~~~~lKi~~i~~il~ 61 (252)
|....+++|++.++.++.
T Consensus 4 d~RK~mG~Kv~~~l~~l~ 21 (46)
T d1ppjd2 4 DHRKRMGLKMLLMMGLLL 21 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455678888776665544
No 5
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.20 E-value=2.9e+02 Score=15.47 Aligned_cols=24 Identities=21% Similarity=0.527 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhcc
Q 041596 50 KFKIIAVCSILVTSMIGVCLPLFTCA 75 (252)
Q Consensus 50 ~lKi~~i~~il~~sllg~~lPl~~~~ 75 (252)
.+|+.++++++.+|.++ .|+++.|
T Consensus 17 k~rLla~m~~~fGsgfa--~PF~ivR 40 (46)
T d1v54l_ 17 KWRLLAMMTLFFGSGFA--APFFIVR 40 (46)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHhcccc--chHHHHH
Confidence 45677777888777554 5766443
No 6
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.80 E-value=2.3e+02 Score=16.04 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=11.2
Q ss_pred ccchhhhHHHHHHHHHH
Q 041596 44 DRAAALKFKIIAVCSIL 60 (252)
Q Consensus 44 ~~~~~~~lKi~~i~~il 60 (252)
|....+++|.+.++.++
T Consensus 4 DeRK~mg~K~~~i~s~l 20 (47)
T d3cx5d2 4 DERKRLGLKTVIILSSL 20 (47)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 55667888876665544
No 7
>d1q90d_ f.32.1.1 (D:) Subunit IV of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.35 E-value=6.4e+02 Score=17.46 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhc
Q 041596 51 FKIIAVCSILVTSMIGVCLPLFTC 74 (252)
Q Consensus 51 lKi~~i~~il~~sllg~~lPl~~~ 74 (252)
-|++-+.++..+-++-.++|++-+
T Consensus 90 ~kl~GVi~~~~~i~~L~~lP~l~~ 113 (156)
T d1q90d_ 90 NKLLGVLLMAAVPAGLITVPFIES 113 (156)
T ss_dssp CHHHHHHHHHHHHHHHTTTTTTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcc
Confidence 356666555555555556677643
No 8
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=2.72 E-value=6.5e+02 Score=15.47 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhh
Q 041596 128 FTTFIAMLSAVVT-LMVDSFAMSYYKR 153 (252)
Q Consensus 128 ~~~~i~~~Gf~l~-~~iE~~~~~~~~~ 153 (252)
++.+.++.|..++ ..+-.+...+.++
T Consensus 70 ~~~~~~~~Gi~~~~~~~~~i~~~~~~~ 96 (103)
T d1r3jc_ 70 VAVVVMVAGITSFGLVTAALATWFVGR 96 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666554 3333444444433
No 9
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=2.70 E-value=1.1e+03 Score=17.97 Aligned_cols=63 Identities=22% Similarity=0.251 Sum_probs=35.6
Q ss_pred HHHHhHHHHHhccccCCCCCchhHHHHHHHhhHHHHHHHhhhhcHhhhhhhcCCCCCCCCCCcchHHHHHHHHHHHH
Q 041596 63 SMIGVCLPLFTCAVPALQPDKDLFVIVKSFASGVILATGYMHVLPDSFDDLRSPCLPDHPWKEFPFTTFIAMLSAVV 139 (252)
Q Consensus 63 sllg~~lPl~~~~~~~~~~~~~~ls~~~~FaaGV~LataflHLLPea~e~l~~~~~~~~~~~~yP~~~~i~~~Gf~l 139 (252)
+++|-..|-+.|+.. +.+.+..-...++.|++++-. -|.+-..-. ...|.|.+-+...+|.-+
T Consensus 254 ~FvGLi~PhiaR~l~--g~~~~~~lp~s~l~Ga~lll~------aD~l~r~i~------~p~eiPvGvitaliG~P~ 316 (324)
T d1l7va_ 254 GFIGLVIPHILRLCG--LTDHRVLLPGCALAGASALLL------ADIVARLAL------AAAELPIGVVTATLGAPV 316 (324)
T ss_dssp CSSSSHHHHHHHHTT--CCSHHHHHHHHHHHHHHHHHH------HHHHHHHSC------SSSCCCHHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHhc--CCCccHHHHHHHHHHHHHHHH------HHHHHHhhc------ccccchHHHHHHHHHHHH
Confidence 455667787777643 234455556777777777532 233322111 124678887777776543
No 10
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.58 E-value=6.9e+02 Score=15.44 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=18.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHH
Q 041596 47 AALKFKIIAVCSILVTSMIGVCLPLF 72 (252)
Q Consensus 47 ~~~~lKi~~i~~il~~sllg~~lPl~ 72 (252)
..|..+.+.+-.+|+++.+...--+.
T Consensus 16 RYWvIHsiTIPslFiaGwlFVstGLA 41 (82)
T d2axte1 16 RYWVIHSITIPALFIAGWLFVSTGLA 41 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred eEEEEEeecccHHHHhhhhheecccc
Confidence 35777888888888887777654443
Done!