BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041597
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 39 YDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAY 98
Y+IL ++ D +KK Y+RLAL HP+KN + A AF+ + +A VL+NPEKR+ Y
Sbjct: 10 YEILGVSRGASDE-DLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQY 68
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 5/65 (7%)
Query: 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGA-FQIVQSAGDVLTNPE 93
++T YD+L + P +KK Y++LAL HP+KNP+ EG F+ + A +VL++ +
Sbjct: 5 ETTYYDVLGVK-PNATQEELKKAYRKLALKYHPDKNPN---EGEKFKQISQAYEVLSDAK 60
Query: 94 KREAY 98
KRE Y
Sbjct: 61 KRELY 65
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPS-IAAEGAFQIVQSAGDVLTNPE 93
K Y+IL ++ + ++K YKRLA+ HP++N AE F+ ++ A +VLT+ +
Sbjct: 2 KQDYYEILGVSKT-AEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 94 KREAY 98
KR AY
Sbjct: 61 KRAAY 65
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 39 YDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAY 98
YD+L + P+ + +KK Y+++AL HP+KNP A + F+ + A +VL++ +KR+ Y
Sbjct: 11 YDVLGVK-PDASDNELKKAYRKMALKFHPDKNPDGAEQ--FKQISQAYEVLSDEKKRQIY 67
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPS-IAAEGAFQIVQSAGDVLTNPE 93
K Y+IL ++ + ++K YKRLA+ HP++N AE F+ ++ A +VLT+ +
Sbjct: 2 KQDYYEILGVSKT-AEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 94 KREAY 98
KR AY
Sbjct: 61 KRAAY 65
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPS-IAAEGAFQIVQSAGDVLTNPE 93
K Y+IL ++ + ++K YKRLA+ HP++N AE F+ ++ A +VLT+ +
Sbjct: 2 KQDYYEILGVSKT-AEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 94 KREAY 98
KR AY
Sbjct: 61 KRAAY 65
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 39 YDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAY 98
Y L + D +K+ Y+R AL HP+KN AE F+ + A DVL++P KRE +
Sbjct: 6 YQTLGLARGASDE-EIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIF 64
Query: 99 YR 100
R
Sbjct: 65 DR 66
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 10/71 (14%)
Query: 39 YDILAI---TDPEVDNITVKKQYKRLALMLHPEKNP--SIAAEGAFQIVQSAGDVLTNPE 93
Y++L + PE +KK Y++LAL HP+KNP AE F++V A +VL++ +
Sbjct: 12 YEVLGVQASASPE----DIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSK 67
Query: 94 KREAYYRRSFC 104
KR + Y R+ C
Sbjct: 68 KR-SLYDRAGC 77
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 39 YDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAY 98
YDIL + + +KK + +LA+ HP+KN S AE F+ + A + L++ +R+ Y
Sbjct: 10 YDILGVPKSASER-QIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 99 ---YRRSFCSKKSKAGSNSS 115
+F S K ++G +S
Sbjct: 69 DTLGHSAFTSGKGQSGPSSG 88
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 39 YDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAY 98
Y +L ++ +KK YK+LA HP+KN AE F + A ++L+N EKR Y
Sbjct: 20 YRVLGVSRT-ASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNY 78
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 39 YDILAITDPEVDNITVKKQYKRLALMLHPEKNPS--IAAEGAFQIVQSAGDVLTNPEKRE 96
Y++L + + + +KK Y++LAL HP+KNP AE F+ V A +VL++ +KR+
Sbjct: 12 YEVLDVPR-QASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRD 70
Query: 97 AYYR 100
Y R
Sbjct: 71 IYDR 74
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 54 VKKQYKRLALMLHPEKNPSIA--AEGAFQIVQSAGDVLTNPEKREAYYR 100
+KK Y+R AL HP+KNP AE F+ V A +VL++ KRE Y R
Sbjct: 19 IKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDR 67
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 34 MKSTR-YDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNP 92
+K T+ YD+L ++ P + +KK Y++ AL HP+K P+ E F+ + A ++L +P
Sbjct: 5 VKETKLYDLLGVS-PSANEQELKKGYRKAALKYHPDK-PTGDTE-KFKEISEAFEILNDP 61
Query: 93 EKREAY 98
+KRE Y
Sbjct: 62 QKREIY 67
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 27 RVHQLPEMKSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNP-SIAAEGAFQIVQSA 85
R L + Y +L + D + +KK Y++LAL HP+KNP + A F+ + +A
Sbjct: 8 RQRSLSTSGESLYHVLGL-DKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNA 66
Query: 86 GDVLTNPEKREAY 98
+LT+ KR Y
Sbjct: 67 HAILTDATKRNIY 79
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 54 VKKQYKRLALMLHPEKNPSI-AAEGAFQIVQSAGDVLTNPEKREAYYRRSFCS-KKSKAG 111
+++ +K+LAL LHP+KNP+ A G F + A +VL + + R+ Y + + ++ G
Sbjct: 19 IRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGG 78
Query: 112 SNSSWSQPRAD 122
SWS R D
Sbjct: 79 QYESWSYYRYD 89
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 39 YDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAY 98
Y I+ + P D T+K Y+RLA HP+ + AE F+ V A +VL++ ++R Y
Sbjct: 8 YAIMGVK-PTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEY 66
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 54 VKKQYKRLALMLHPEKNPSIA-AEGAFQIVQSAGDVLTNPEKREAYYRRSFCS-KKSKAG 111
+++ +K+LAL LHP+KNP+ A G F + A +VL + + R+ Y + + ++ G
Sbjct: 38 IRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGG 97
Query: 112 SNSSWSQPRAD 122
SWS R D
Sbjct: 98 QYESWSYYRYD 108
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 23 FTAYRVHQLPEMKSTR--YDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQ 80
FT + + +++++ +D+L + P V K Y++LA++LHP+K + +E AF+
Sbjct: 12 FTKEQADAIRRIRNSKDSWDMLGVK-PGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFK 70
Query: 81 IVQSAGDVL 89
V +A L
Sbjct: 71 AVVNARTAL 79
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 34.3 bits (77), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 39 YDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAY 98
Y IL + P D T+K Y+RLA HP+ + AE F+ + A +VL + ++R Y
Sbjct: 31 YAILGV-QPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEY 89
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 34.3 bits (77), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 54 VKKQYKRLALMLHPEKNPSI-AAEGAFQIVQSAGDVLTNPEKREAY--YRRS 102
+ ++K AL HP+K+P A FQ +Q A ++LTN E R Y +RRS
Sbjct: 37 ILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRS 88
>pdb|3IU1|A Chain A, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa
pdb|3IU1|B Chain B, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa
pdb|3IU2|A Chain A, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd90096
pdb|3IU2|B Chain B, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd90096
pdb|3IWE|A Chain A, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd85646
pdb|3IWE|B Chain B, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd85646
pdb|3JTK|A Chain A, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd90055
pdb|3JTK|B Chain B, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd90055
Length = 383
Score = 34.3 bits (77), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 48 EVDNITVKKQY--KRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCS 105
E++ + V K+ KR+A +L E + EG FQ V +AG VL P Y+ RS
Sbjct: 131 EINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVLPKPVGTCRYWHRSLNP 190
Query: 106 KK 107
+K
Sbjct: 191 RK 192
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 39 YDILAITDPEVDNITVKKQYKRLALMLHPE----KNPSIAAEGAFQIVQSAGDVLTNPEK 94
YD+L + E D + K Y+ LA HP+ K + AE F+++ +A + L + E
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 95 REAY 98
+ Y
Sbjct: 78 KTNY 81
>pdb|1RXT|A Chain A, Crystal Structure Of Human Myristoyl-Coa:protein N-
Myristoyltransferase.
pdb|1RXT|B Chain B, Crystal Structure Of Human Myristoyl-Coa:protein N-
Myristoyltransferase.
pdb|1RXT|C Chain C, Crystal Structure Of Human Myristoyl-Coa:protein N-
Myristoyltransferase.
pdb|1RXT|D Chain D, Crystal Structure Of Human Myristoyl-Coa:protein N-
Myristoyltransferase
Length = 496
Score = 34.3 bits (77), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 48 EVDNITVKKQY--KRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCS 105
E++ + V K+ KR+A +L E + EG FQ V +AG VL P Y+ RS
Sbjct: 244 EINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVLPKPVGTCRYWHRSLNP 303
Query: 106 KK 107
+K
Sbjct: 304 RK 305
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 33.9 bits (76), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 28 VHQLPEMKSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGA-------FQ 80
V Q+P K Y IL DP + +K++Y++L LM HP+K + G F
Sbjct: 4 VEQMP--KKDWYSILG-ADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFI 60
Query: 81 IVQSAGDVLTNPEKREAY 98
+ A +L N E + Y
Sbjct: 61 EIDQAWKILGNEETKREY 78
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 34 MKSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGA-------FQIVQSAG 86
+K Y IL DP + +K++Y++L L+ HP+K + G F + A
Sbjct: 14 LKKDWYSILG-ADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAW 72
Query: 87 DVLTNPEKREAY 98
+L N E ++ Y
Sbjct: 73 KILGNEETKKKY 84
>pdb|4B10|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Non-
Hydrolysable Co-Factor
pdb|4B10|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Non-
Hydrolysable Co-Factor
pdb|4B10|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Non-
Hydrolysable Co-Factor
pdb|4B11|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 13)
pdb|4B11|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 13)
pdb|4B11|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 13)
pdb|4B12|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 23)
pdb|4B12|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 23)
pdb|4B12|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 23)
pdb|4B13|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 25)
pdb|4B13|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 25)
pdb|4B13|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 25)
pdb|4B14|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 26)
pdb|4B14|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 26)
pdb|4B14|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 26)
Length = 385
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 43 AITDPEVDNITVKKQY--KRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYR 100
I EV+ + V K KRLA +L E I E +Q + +AG L P YY
Sbjct: 129 TIKMAEVNFLCVHKTLRSKRLAPVLIKEITRRINLENIWQAIYTAGVYLPKPVSDARYYH 188
Query: 101 RSFCSKK 107
RS KK
Sbjct: 189 RSINVKK 195
>pdb|4A95|A Chain A, Plasmodium Vivax N-Myristoyltransferase With Quinoline
Inhibitor
pdb|4A95|B Chain B, Plasmodium Vivax N-Myristoyltransferase With Quinoline
Inhibitor
pdb|4A95|C Chain C, Plasmodium Vivax N-Myristoyltransferase With Quinoline
Inhibitor
pdb|4BBH|A Chain A, Plasmodium Vivax N-myristoyltransferase With A Bound
Benzothiophene Inhibitor
pdb|4BBH|B Chain B, Plasmodium Vivax N-myristoyltransferase With A Bound
Benzothiophene Inhibitor
pdb|4BBH|C Chain C, Plasmodium Vivax N-myristoyltransferase With A Bound
Benzothiophene Inhibitor
Length = 384
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 43 AITDPEVDNITVKKQY--KRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYR 100
I EV+ + V K KRLA +L E I E +Q + +AG L P YY
Sbjct: 128 TIKMAEVNFLCVHKTLRSKRLAPVLIKEITRRINLENIWQAIYTAGVYLPKPVSDARYYH 187
Query: 101 RSFCSKK 107
RS KK
Sbjct: 188 RSINVKK 194
>pdb|3AG7|A Chain A, An Auxilin-Like J-Domain Containing Protein, Jac1
J-Domain
Length = 106
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
Query: 49 VDNITVKKQYKRLALMLHPEK--------NPSIAAEGAFQIVQSAGD 87
++ V+K Y+R L+LHP+K N AE F+++Q A D
Sbjct: 52 IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWD 98
>pdb|2WSA|A Chain A, Crystal Structure Of Leishmania Major N-
Myristoyltransferase (Nmt) With Bound Myristoyl-Coa And
A Pyrazole Sulphonamide Ligand (Ddd85646)
Length = 438
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 48 EVDNITVKKQY--KRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCS 105
E++ + V KQ KRLA +L E + +Q V +AG +L P Y+ RS
Sbjct: 182 EINFLCVHKQLREKRLAPILIKEATRRVNRTNVWQAVYTAGVLLPTPYASGQYFHRSLNP 241
Query: 106 KK 107
+K
Sbjct: 242 EK 243
>pdb|3H5Z|A Chain A, Crystal Structure Of Leishmania Major
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|4A2Z|A Chain A, Crystal Structure Of Leishmania Major
N-Myristoyltransferase (Nmt) With Bound Myristoyl-Coa
And A Pyrazole Sulphonamide Ligand
pdb|4A30|A Chain A, Crystal Structure Of Leishmania Major
N-Myristoyltransferase (Nmt) With Bound Myristoyl-Coa
And A Pyrazole Sulphonamide Ligand
pdb|4A31|A Chain A, Crystal Structure Of Leishmania Major
N-Myristoyltransferase (Nmt) With Bound Myristoyl-Coa
And A Pyrazole Sulphonamide Ligand
pdb|4A32|A Chain A, Crystal Structure Of Leishmania Major
N-Myristoyltransferase (Nmt) With Bound Myristoyl-Coa
And A Pyrazole Sulphonamide Ligand
pdb|4A33|A Chain A, Crystal Structure Of Leishmania Major
N-Myristoyltransferase (Nmt) With Bound Myristoyl-Coa
And A Pyrazole Sulphonamide Ligand
Length = 438
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 48 EVDNITVKKQY--KRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCS 105
E++ + V KQ KRLA +L E + +Q V +AG +L P Y+ RS
Sbjct: 182 EINFLCVHKQLREKRLAPILIKEATRRVNRTNVWQAVYTAGVLLPTPYASGQYFHRSLNP 241
Query: 106 KK 107
+K
Sbjct: 242 EK 243
>pdb|2WUU|A Chain A, Structure Of N-Myristoyltransferase From L. Donovani
Length = 421
Score = 30.0 bits (66), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 48 EVDNITVKKQY--KRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCS 105
E++ + V KQ KRLA +L E + +Q V +AG +L P Y+ RS
Sbjct: 165 EINFLCVHKQLREKRLAPILIKEVTRRVNRTNVWQAVYTAGVLLPTPYASGQYFHRSLNP 224
Query: 106 KK 107
+K
Sbjct: 225 EK 226
>pdb|1R4Y|A Chain A, Solution Structure Of The Deletion Mutant Delta(7-22) Of
The Cytotoxic Ribonuclease Alpha-Sarcin
Length = 136
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 81 IVQSAGDVLTNPEKREAYYRRSFCSKKSKAGSNSSWSQPRADGDSNFSRARKPSPFRFQK 140
+ + G +L N K E+ + S S W DGD + R +P +F K
Sbjct: 2 VTWTCGGLLYNQNKAESNSHHAPLSDGKTGSSYPHWFTNGYDGDGKLPKGR--TPIKFGK 59
Query: 141 TDPD 144
+D D
Sbjct: 60 SDCD 63
>pdb|2NPS|B Chain B, Crystal Structure Of The Early Endosomal Snare Complex
Length = 71
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 43 AITDPEVDNITVKKQYKRLALMLHPEKN--PSIAA--EGAFQIVQSAGDVLTNPEKREAY 98
AI E D + V + +K LA+M+H + + SI A E + V+ A D L +R AY
Sbjct: 7 AIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQL----QRAAY 62
Query: 99 YRR 101
Y++
Sbjct: 63 YQK 65
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 54 VKKQYKRLALMLHPE----KNPSIAAEGAFQIVQSAGDVLTNPEKREAY 98
+ K Y++LAL HP+ + AE F + +A +VL++PE R+ +
Sbjct: 399 IIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEXRKKF 447
>pdb|1AK6|A Chain A, Destrin, Nmr, Minimized Average Structure
pdb|1AK7|A Chain A, Destrin, Nmr, 20 Structures
Length = 174
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 11/67 (16%)
Query: 54 VKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEK-----------REAYYRRS 102
+KK+ K + L +K I EG +V G +T+P K R A Y S
Sbjct: 38 IKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPEKDCRYALYDAS 97
Query: 103 FCSKKSK 109
F +K+S+
Sbjct: 98 FETKESR 104
>pdb|2QFE|A Chain A, Distal C2-Like Domain Of Human Calpain-7
Length = 148
Score = 25.8 bits (55), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 113 NSSWSQPRADGDSNFSRARKPSP---FRFQKTDP 143
N WS A G NF K +P F +KT P
Sbjct: 28 NGKWSGQSAGGCGNFQETHKNNPIYQFHIEKTGP 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,820,583
Number of Sequences: 62578
Number of extensions: 179539
Number of successful extensions: 254
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 219
Number of HSP's gapped (non-prelim): 40
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)