Query 041597
Match_columns 149
No_of_seqs 224 out of 1407
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 08:49:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041597.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041597hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 3.9E-28 8.4E-33 198.9 9.6 74 34-108 2-76 (371)
2 KOG0713 Molecular chaperone (D 99.9 4.2E-26 9.1E-31 183.3 8.8 76 33-109 13-89 (336)
3 KOG0624 dsRNA-activated protei 99.9 2.4E-23 5.1E-28 168.9 11.6 101 1-102 359-463 (504)
4 KOG0712 Molecular chaperone (D 99.9 7.1E-24 1.5E-28 171.8 8.3 74 35-111 3-76 (337)
5 PRK14288 chaperone protein Dna 99.9 3.7E-23 8.1E-28 171.1 8.2 71 35-106 2-73 (369)
6 PRK14296 chaperone protein Dna 99.9 9.4E-23 2E-27 168.9 7.8 71 35-106 3-73 (372)
7 PRK14299 chaperone protein Dna 99.9 2E-21 4.4E-26 156.2 10.4 70 35-105 3-72 (291)
8 PRK14279 chaperone protein Dna 99.9 6.3E-22 1.4E-26 164.9 7.6 70 34-104 7-77 (392)
9 PRK14298 chaperone protein Dna 99.9 2.1E-21 4.6E-26 161.1 9.3 71 35-106 4-74 (377)
10 PRK14287 chaperone protein Dna 99.9 1.6E-21 3.4E-26 161.6 8.2 71 35-106 3-73 (371)
11 PRK14286 chaperone protein Dna 99.9 1.5E-21 3.3E-26 161.7 7.9 70 36-106 4-74 (372)
12 PRK14291 chaperone protein Dna 99.8 2.9E-21 6.2E-26 160.5 9.2 71 35-106 2-72 (382)
13 PRK14278 chaperone protein Dna 99.8 1.6E-21 3.4E-26 161.9 7.3 69 35-104 2-70 (378)
14 PRK14276 chaperone protein Dna 99.8 2.1E-21 4.4E-26 161.3 7.9 72 35-107 3-74 (380)
15 PRK14282 chaperone protein Dna 99.8 5.2E-21 1.1E-25 158.3 10.1 71 35-106 3-75 (369)
16 PRK14285 chaperone protein Dna 99.8 2.5E-21 5.3E-26 160.1 7.8 71 35-106 2-73 (365)
17 PRK14283 chaperone protein Dna 99.8 2.9E-21 6.3E-26 160.3 7.8 71 35-106 4-74 (378)
18 PRK14277 chaperone protein Dna 99.8 6.5E-21 1.4E-25 158.6 9.9 72 35-107 4-76 (386)
19 PRK14280 chaperone protein Dna 99.8 6E-21 1.3E-25 158.4 8.7 71 36-107 4-74 (376)
20 PTZ00037 DnaJ_C chaperone prot 99.8 4.6E-21 1E-25 160.9 7.2 68 35-106 27-94 (421)
21 PRK14301 chaperone protein Dna 99.8 8.1E-21 1.8E-25 157.4 8.4 71 35-106 3-74 (373)
22 PRK14294 chaperone protein Dna 99.8 1.1E-20 2.5E-25 156.2 8.9 71 35-106 3-74 (366)
23 PRK14295 chaperone protein Dna 99.8 9.1E-21 2E-25 157.9 8.0 72 34-106 7-83 (389)
24 PF00226 DnaJ: DnaJ domain; I 99.8 1.2E-20 2.5E-25 119.4 6.4 62 37-99 1-64 (64)
25 PRK14281 chaperone protein Dna 99.8 9.9E-21 2.1E-25 158.0 7.5 72 35-107 2-74 (397)
26 PRK14297 chaperone protein Dna 99.8 1.1E-20 2.4E-25 156.9 7.3 70 36-106 4-74 (380)
27 PRK14284 chaperone protein Dna 99.8 1.5E-20 3.3E-25 156.6 7.9 69 37-106 2-71 (391)
28 PRK10767 chaperone protein Dna 99.8 3E-20 6.5E-25 153.9 8.8 71 35-106 3-74 (371)
29 TIGR02349 DnaJ_bact chaperone 99.8 4.9E-20 1.1E-24 151.7 9.5 70 37-107 1-70 (354)
30 PRK14300 chaperone protein Dna 99.8 2.4E-20 5.2E-25 154.6 7.7 71 35-106 2-72 (372)
31 PRK14290 chaperone protein Dna 99.8 5.2E-20 1.1E-24 152.2 7.9 71 35-106 2-74 (365)
32 PRK14293 chaperone protein Dna 99.8 5.3E-20 1.1E-24 152.6 7.8 71 35-106 2-72 (374)
33 KOG0717 Molecular chaperone (D 99.8 4E-20 8.8E-25 153.6 6.7 77 32-109 4-82 (508)
34 KOG0716 Molecular chaperone (D 99.8 5.8E-20 1.3E-24 144.1 6.8 71 35-106 30-101 (279)
35 PRK14292 chaperone protein Dna 99.8 8.8E-20 1.9E-24 151.1 7.7 69 36-105 2-70 (371)
36 PRK14289 chaperone protein Dna 99.8 1.5E-19 3.3E-24 150.4 9.0 71 35-106 4-75 (386)
37 KOG0715 Molecular chaperone (D 99.8 9.7E-20 2.1E-24 146.3 7.1 68 37-105 44-111 (288)
38 KOG0691 Molecular chaperone (D 99.8 1.4E-19 3.1E-24 145.2 7.7 74 35-109 4-78 (296)
39 KOG0718 Molecular chaperone (D 99.8 1.4E-19 3.1E-24 150.5 7.4 72 35-107 8-83 (546)
40 PRK10266 curved DNA-binding pr 99.8 1.6E-19 3.5E-24 146.1 7.4 67 36-103 4-70 (306)
41 KOG0550 Molecular chaperone (D 99.8 4.4E-19 9.6E-24 146.3 9.4 101 2-104 340-442 (486)
42 PTZ00341 Ring-infected erythro 99.8 6.5E-19 1.4E-23 157.1 8.7 72 35-107 572-643 (1136)
43 KOG0719 Molecular chaperone (D 99.8 1.9E-18 4E-23 133.2 6.8 69 34-103 12-83 (264)
44 smart00271 DnaJ DnaJ molecular 99.7 3.3E-18 7.1E-23 106.5 6.5 57 36-93 1-59 (60)
45 cd06257 DnaJ DnaJ domain or J- 99.7 7.5E-18 1.6E-22 103.1 6.8 54 37-91 1-55 (55)
46 TIGR03835 termin_org_DnaJ term 99.7 4E-17 8.6E-22 143.1 8.7 71 36-107 2-72 (871)
47 COG2214 CbpA DnaJ-class molecu 99.7 6.8E-17 1.5E-21 121.8 7.6 68 34-102 4-73 (237)
48 KOG0721 Molecular chaperone (D 99.7 6.4E-17 1.4E-21 123.5 7.3 69 37-106 100-169 (230)
49 PHA03102 Small T antigen; Revi 99.7 6.1E-17 1.3E-21 118.9 6.5 70 36-109 5-76 (153)
50 PRK01356 hscB co-chaperone Hsc 99.6 8.6E-16 1.9E-20 114.6 7.9 67 36-103 2-74 (166)
51 PRK05014 hscB co-chaperone Hsc 99.6 9.3E-16 2E-20 114.9 7.5 66 37-103 2-75 (171)
52 PRK03578 hscB co-chaperone Hsc 99.6 5.7E-15 1.2E-19 111.1 8.1 68 35-103 5-80 (176)
53 PRK00294 hscB co-chaperone Hsc 99.6 6.9E-15 1.5E-19 110.3 7.9 68 35-103 3-78 (173)
54 KOG0720 Molecular chaperone (D 99.6 2.9E-15 6.4E-20 124.7 6.4 67 35-102 234-300 (490)
55 KOG0714 Molecular chaperone (D 99.6 3.1E-15 6.7E-20 117.7 6.0 73 34-107 1-75 (306)
56 KOG0722 Molecular chaperone (D 99.5 7.1E-15 1.5E-19 115.0 4.3 67 35-102 32-98 (329)
57 PTZ00100 DnaJ chaperone protei 99.5 8.8E-14 1.9E-18 97.6 8.4 51 36-90 65-115 (116)
58 PHA02624 large T antigen; Prov 99.4 6.4E-13 1.4E-17 115.2 9.7 61 34-98 9-71 (647)
59 PRK09430 djlA Dna-J like membr 99.4 2.9E-13 6.3E-18 107.9 5.9 55 36-91 200-262 (267)
60 PRK01773 hscB co-chaperone Hsc 99.4 2.1E-12 4.5E-17 96.9 7.6 67 36-103 2-76 (173)
61 KOG1150 Predicted molecular ch 99.3 2.1E-12 4.6E-17 97.9 5.7 86 7-97 28-115 (250)
62 COG5407 SEC63 Preprotein trans 99.3 7E-12 1.5E-16 104.8 7.3 72 35-107 97-174 (610)
63 COG5269 ZUO1 Ribosome-associat 99.3 3.2E-12 7E-17 101.0 3.5 78 34-111 41-123 (379)
64 TIGR00714 hscB Fe-S protein as 99.2 4.2E-11 9.1E-16 88.6 6.6 55 49-103 3-63 (157)
65 KOG1789 Endocytosis protein RM 98.6 1.4E-07 3.1E-12 86.0 7.7 52 37-90 1282-1336(2235)
66 KOG0568 Molecular chaperone (D 98.6 6.6E-08 1.4E-12 75.4 4.3 55 36-91 47-102 (342)
67 KOG0723 Molecular chaperone (D 98.5 4E-07 8.7E-12 62.7 5.3 63 26-92 45-108 (112)
68 KOG0431 Auxilin-like protein a 98.1 9.7E-06 2.1E-10 69.2 7.5 71 15-89 370-448 (453)
69 KOG3192 Mitochondrial J-type c 98.0 1.5E-05 3.2E-10 58.6 5.0 71 34-104 6-83 (168)
70 COG1076 DjlA DnaJ-domain-conta 97.3 0.00038 8.3E-09 52.2 4.2 53 36-89 113-173 (174)
71 COG1076 DjlA DnaJ-domain-conta 96.9 0.0006 1.3E-08 51.1 2.6 65 38-103 3-75 (174)
72 PF03656 Pam16: Pam16; InterP 96.4 0.008 1.7E-07 43.0 5.2 53 37-93 59-111 (127)
73 KOG0724 Zuotin and related mol 90.7 0.28 6.1E-06 40.1 3.4 54 49-102 4-62 (335)
74 PF13446 RPT: A repeated domai 87.8 1.9 4.1E-05 26.5 4.9 26 37-63 6-31 (62)
75 PF14687 DUF4460: Domain of un 86.5 1.7 3.7E-05 30.3 4.6 46 46-91 3-53 (112)
76 PF11833 DUF3353: Protein of u 84.4 2.8 6E-05 32.1 5.3 37 46-89 1-37 (194)
77 COG5552 Uncharacterized conser 81.4 9.7 0.00021 24.8 6.1 47 36-83 3-49 (88)
78 KOG3442 Uncharacterized conser 64.6 23 0.00049 25.3 5.1 50 37-90 60-109 (132)
79 PF07709 SRR: Seven Residue Re 61.9 5.5 0.00012 17.3 1.1 13 78-90 2-14 (14)
80 KOG0527 HMG-box transcription 60.4 11 0.00024 31.2 3.5 41 56-100 75-115 (331)
81 cd01388 SOX-TCF_HMG-box SOX-TC 56.4 28 0.0006 21.7 4.1 42 56-101 14-55 (72)
82 cd00084 HMG-box High Mobility 54.8 42 0.00091 19.7 4.9 43 55-101 12-54 (66)
83 PF10041 DUF2277: Uncharacteri 54.8 57 0.0012 21.2 6.2 44 37-81 4-47 (78)
84 KOG4234 TPR repeat-containing 53.8 13 0.00029 29.2 2.7 58 1-61 152-211 (271)
85 PF08447 PAS_3: PAS fold; Int 51.2 5.1 0.00011 25.2 0.1 30 36-70 6-36 (91)
86 cd01389 MATA_HMG-box MATA_HMG- 50.4 36 0.00079 21.4 4.0 42 55-100 13-54 (77)
87 cd01390 HMGB-UBF_HMG-box HMGB- 48.4 56 0.0012 19.3 4.8 40 58-101 15-54 (66)
88 PF12434 Malate_DH: Malate deh 46.7 26 0.00056 18.2 2.2 18 50-67 9-26 (28)
89 PF13428 TPR_14: Tetratricopep 46.0 21 0.00047 19.7 2.2 22 2-23 20-41 (44)
90 KOG0718 Molecular chaperone (D 45.8 67 0.0015 28.2 5.9 42 22-64 58-109 (546)
91 PF00515 TPR_1: Tetratricopept 45.6 22 0.00047 18.2 2.0 14 2-15 20-33 (34)
92 PF07719 TPR_2: Tetratricopept 43.1 27 0.00059 17.5 2.2 14 2-15 20-33 (34)
93 PF00505 HMG_box: HMG (high mo 38.4 81 0.0018 18.8 4.1 41 56-100 13-53 (69)
94 PF14853 Fis1_TPR_C: Fis1 C-te 38.4 48 0.001 19.8 2.9 30 2-31 20-49 (53)
95 PRK10866 outer membrane biogen 38.1 1.9E+02 0.0041 22.4 8.3 80 2-82 88-170 (243)
96 smart00398 HMG high mobility g 33.8 91 0.002 18.4 3.8 41 57-101 15-55 (70)
97 KOG0550 Molecular chaperone (D 32.8 48 0.001 28.7 3.1 69 1-71 221-303 (486)
98 PF01846 FF: FF domain; Inter 30.6 1.1E+02 0.0024 17.4 4.4 46 53-100 1-50 (51)
99 PHA02053 hypothetical protein 30.3 1.8E+02 0.004 19.9 5.4 46 46-91 64-111 (115)
100 PRK00423 tfb transcription ini 29.2 1.3E+02 0.0027 24.5 4.9 24 37-65 281-304 (310)
101 cd07356 HN_L-whirlin_R1_like F 29.1 1.7E+02 0.0036 19.1 4.5 39 55-100 21-59 (78)
102 cd02682 MIT_AAA_Arch MIT: doma 28.5 1.1E+02 0.0023 19.8 3.5 55 1-65 5-59 (75)
103 PF03704 BTAD: Bacterial trans 27.4 2E+02 0.0044 19.7 5.2 29 2-30 81-109 (146)
104 KOG2072 Translation initiation 27.2 1.3E+02 0.0029 28.3 5.0 57 36-95 390-454 (988)
105 PF14559 TPR_19: Tetratricopep 25.8 1.3E+02 0.0028 17.5 3.5 27 2-28 10-36 (68)
106 PF15178 TOM_sub5: Mitochondri 24.7 1.3E+02 0.0029 17.7 3.1 24 39-63 2-25 (51)
107 PRK00423 tfb transcription ini 24.6 1.8E+02 0.0039 23.6 5.0 26 37-67 187-212 (310)
108 PTZ00199 high mobility group p 24.2 2.2E+02 0.0047 18.7 5.1 41 58-100 37-77 (94)
109 COG2879 Uncharacterized small 23.5 2E+02 0.0043 18.1 3.9 27 56-83 26-52 (65)
110 KOG0906 Phosphatidylinositol 3 23.2 2.3E+02 0.0051 26.1 5.7 72 19-90 604-693 (843)
111 PRK00810 nifW nitrogenase stab 23.0 1.1E+02 0.0025 21.3 3.1 65 36-101 19-91 (113)
112 PF07739 TipAS: TipAS antibiot 22.1 2.4E+02 0.0052 18.6 4.6 48 43-99 51-99 (118)
113 PF14164 YqzH: YqzH-like prote 22.0 1.1E+02 0.0025 19.2 2.6 19 50-68 27-45 (64)
114 PF04719 TAFII28: hTAFII28-lik 21.8 75 0.0016 21.3 1.9 14 48-61 77-90 (90)
115 PF13414 TPR_11: TPR repeat; P 21.6 1.5E+02 0.0031 17.4 3.1 25 2-26 22-46 (69)
116 PF12725 DUF3810: Protein of u 21.0 3.3E+02 0.0072 22.3 5.9 56 35-91 81-148 (318)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.9e-28 Score=198.87 Aligned_cols=74 Identities=35% Similarity=0.595 Sum_probs=70.1
Q ss_pred CccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHhcCChhhHHHHhhhccccCCC
Q 041597 34 MKSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNP-SIAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSKKS 108 (149)
Q Consensus 34 ~~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~-~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~ 108 (149)
+.+|||+|||| +++||.+|||+|||+||++||||+|+ +.+|+++|++|++||+||+||++|+.||++|..+...
T Consensus 2 ~~~dyYeiLGV-~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~ 76 (371)
T COG0484 2 AKRDYYEILGV-SKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKA 76 (371)
T ss_pred CccchhhhcCC-CCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCcccccc
Confidence 56799999999 99999999999999999999999999 6679999999999999999999999999999888773
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.2e-26 Score=183.34 Aligned_cols=76 Identities=32% Similarity=0.513 Sum_probs=71.4
Q ss_pred CCccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChh-HHHHHHHHHHHHHhcCChhhHHHHhhhccccCCCC
Q 041597 33 EMKSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIA-AEGAFQIVQSAGDVLTNPEKREAYYRRSFCSKKSK 109 (149)
Q Consensus 33 ~~~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~-a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~ 109 (149)
...+|||+|||| +++|+..|||+|||+||+++|||+|++++ |.+.|+.|+.||+||+||++|+.||.+|+++....
T Consensus 13 ~~~rDfYelLgV-~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~ 89 (336)
T KOG0713|consen 13 LAGRDFYELLGV-PKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDE 89 (336)
T ss_pred hcCCCHHHHhCC-CCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhccc
Confidence 346799999999 99999999999999999999999999887 99999999999999999999999999998887754
No 3
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.90 E-value=2.4e-23 Score=168.92 Aligned_cols=101 Identities=24% Similarity=0.344 Sum_probs=95.6
Q ss_pred ChHHHHHHHHhhCCCCccHHHHHHHHHHhccCCCccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChh----HH
Q 041597 1 MAIKQLKAAKDFNGNLPNLDDYFTAYRVHQLPEMKSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIA----AE 76 (149)
Q Consensus 1 ~A~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~----a~ 76 (149)
||+.++++|..++++...++.-+.....+.....++|||+|||| .++|+..||.+|||+++.+||||.....+ ++
T Consensus 359 ~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYKILGV-kRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAE 437 (504)
T KOG0624|consen 359 DAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRDYYKILGV-KRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAE 437 (504)
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHHHhhh-cccccHHHHHHHHHHHHHhcCCccccCHHHHHHHH
Confidence 68999999999999999999999999999999999999999999 99999999999999999999999987655 88
Q ss_pred HHHHHHHHHHHhcCChhhHHHHhhhc
Q 041597 77 GAFQIVQSAGDVLTNPEKREAYYRRS 102 (149)
Q Consensus 77 ~~f~~i~~Ay~~L~d~~~R~~YD~~~ 102 (149)
++|..|..|-+||+||++|+.||..-
T Consensus 438 KKFIDIAAAKEVLsd~EkRrqFDnGe 463 (504)
T KOG0624|consen 438 KKFIDIAAAKEVLSDPEKRRQFDNGE 463 (504)
T ss_pred HhhhhHHHHHHhhcCHHHHhhccCCC
Confidence 99999999999999999999999754
No 4
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=7.1e-24 Score=171.81 Aligned_cols=74 Identities=38% Similarity=0.653 Sum_probs=69.3
Q ss_pred ccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhccccCCCCCC
Q 041597 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSKKSKAG 111 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~~~ 111 (149)
...||+|||| .++||.+|||+|||+|+++||||+|+. +.++|++|++||+||+||++|..||++|+++....++
T Consensus 3 ~~~~y~il~v-~~~As~~eikkayrkla~k~HpDkn~~--~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~ 76 (337)
T KOG0712|consen 3 NTKLYDILGV-SPDASEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGG 76 (337)
T ss_pred ccccceeecc-CCCcCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCC
Confidence 3589999999 999999999999999999999999998 7999999999999999999999999999888866554
No 5
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=3.7e-23 Score=171.13 Aligned_cols=71 Identities=32% Similarity=0.543 Sum_probs=65.9
Q ss_pred ccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHhcCChhhHHHHhhhccccC
Q 041597 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPS-IAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSK 106 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 106 (149)
..|||+|||| +++||.+|||+|||+||++||||+++. ..++++|++|++||+||+||.+|+.||++|..+.
T Consensus 2 ~~dyY~vLgv-~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~ 73 (369)
T PRK14288 2 ELSYYEILEV-EKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGL 73 (369)
T ss_pred CCChHHHcCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccccc
Confidence 4799999999 999999999999999999999999974 4489999999999999999999999999997644
No 6
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=9.4e-23 Score=168.90 Aligned_cols=71 Identities=25% Similarity=0.447 Sum_probs=66.6
Q ss_pred ccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhccccC
Q 041597 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSK 106 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 106 (149)
.+|||+|||| +++|+.++||+|||+|+++||||+|+...++++|++|++||+||+||++|+.||++|..+.
T Consensus 3 ~~dyY~~Lgv-~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~ 73 (372)
T PRK14296 3 KKDYYEVLGV-SKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAF 73 (372)
T ss_pred CCCHHHhcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhh
Confidence 3699999999 9999999999999999999999999876699999999999999999999999999997643
No 7
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=2e-21 Score=156.25 Aligned_cols=70 Identities=33% Similarity=0.467 Sum_probs=66.1
Q ss_pred ccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhcccc
Q 041597 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCS 105 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 105 (149)
..|||+|||| +++||.++||+|||+|+++||||+++...++++|++|++||++|+||.+|..||+++..+
T Consensus 3 ~~d~y~vLgv-~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~ 72 (291)
T PRK14299 3 YKDYYAILGV-PKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTA 72 (291)
T ss_pred CCCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCcc
Confidence 4699999999 999999999999999999999999987678999999999999999999999999998764
No 8
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=6.3e-22 Score=164.94 Aligned_cols=70 Identities=36% Similarity=0.567 Sum_probs=64.9
Q ss_pred CccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-hHHHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 041597 34 MKSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSI-AAEGAFQIVQSAGDVLTNPEKREAYYRRSFC 104 (149)
Q Consensus 34 ~~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~-~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 104 (149)
+.+|||+|||| +++|+.++||+|||+|+++||||+++.. .+.++|++|++||+||+||++|+.||+++..
T Consensus 7 ~~~Dyy~~Lgv-~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~ 77 (392)
T PRK14279 7 VEKDFYKELGV-SSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRL 77 (392)
T ss_pred cccCHHHhcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhh
Confidence 35799999999 9999999999999999999999999754 4899999999999999999999999999853
No 9
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=2.1e-21 Score=161.09 Aligned_cols=71 Identities=32% Similarity=0.512 Sum_probs=66.5
Q ss_pred ccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhccccC
Q 041597 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSK 106 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 106 (149)
..|||+|||| +++|+.++||+|||+|+++||||+++...++++|++|++||+||+||.+|+.||++|..+.
T Consensus 4 ~~d~y~iLgv-~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 74 (377)
T PRK14298 4 TRDYYEILGL-SKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGI 74 (377)
T ss_pred CCCHHHhhCC-CCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCcccc
Confidence 3699999999 9999999999999999999999999876689999999999999999999999999987654
No 10
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.6e-21 Score=161.57 Aligned_cols=71 Identities=32% Similarity=0.508 Sum_probs=66.4
Q ss_pred ccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhccccC
Q 041597 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSK 106 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 106 (149)
..|||+|||| +++|+.++||+|||+|+++||||+++...++++|++|++||++|+||.+|+.||++|..+.
T Consensus 3 ~~d~y~~Lgv-~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~ 73 (371)
T PRK14287 3 KRDYYEVLGV-DRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDP 73 (371)
T ss_pred CCCHHHhcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCccc
Confidence 3699999999 9999999999999999999999999876688999999999999999999999999997654
No 11
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.5e-21 Score=161.69 Aligned_cols=70 Identities=30% Similarity=0.543 Sum_probs=65.3
Q ss_pred cChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHhcCChhhHHHHhhhccccC
Q 041597 36 STRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPS-IAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSK 106 (149)
Q Consensus 36 ~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 106 (149)
.|||+|||| +++|+.++||+|||+|+++||||+++. ..++++|++|++||+||+||.+|+.||+++..+.
T Consensus 4 ~d~y~~Lgv-~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 74 (372)
T PRK14286 4 RSYYDILGV-SKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGV 74 (372)
T ss_pred CCHHHhcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhh
Confidence 699999999 999999999999999999999999974 4488999999999999999999999999997654
No 12
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=2.9e-21 Score=160.52 Aligned_cols=71 Identities=34% Similarity=0.517 Sum_probs=66.7
Q ss_pred ccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhccccC
Q 041597 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSK 106 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 106 (149)
..|||+|||| +++|+.++||+|||+|+++||||+++...+.++|++|++||+||+||.+|+.||+++..+.
T Consensus 2 ~~d~Y~~Lgv-~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~ 72 (382)
T PRK14291 2 KKDYYEILGV-SRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAF 72 (382)
T ss_pred CCCHHHhhCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhccccc
Confidence 4699999999 9999999999999999999999999876689999999999999999999999999987654
No 13
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.6e-21 Score=161.92 Aligned_cols=69 Identities=29% Similarity=0.474 Sum_probs=65.5
Q ss_pred ccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 041597 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRSFC 104 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 104 (149)
..|||+|||| +++|+.++||+|||+|+++||||+++...++++|++|++||+||+||.+|..||++|..
T Consensus 2 ~~d~y~iLgv-~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 2 ARDYYGLLGV-SRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CCCcceecCC-CCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 4699999999 99999999999999999999999998766899999999999999999999999999864
No 14
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=2.1e-21 Score=161.31 Aligned_cols=72 Identities=29% Similarity=0.488 Sum_probs=67.1
Q ss_pred ccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhccccCC
Q 041597 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSKK 107 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~ 107 (149)
..|||+|||| +++|+.++||+|||+|+++||||+++...++++|++|++||+||+||.+|+.||++|..+..
T Consensus 3 ~~d~y~~Lgv-~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~ 74 (380)
T PRK14276 3 NTEYYDRLGV-SKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGAN 74 (380)
T ss_pred CCCHHHhhCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCcccc
Confidence 3699999999 99999999999999999999999998767899999999999999999999999999976543
No 15
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=5.2e-21 Score=158.33 Aligned_cols=71 Identities=34% Similarity=0.610 Sum_probs=65.6
Q ss_pred ccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh--hHHHHHHHHHHHHHhcCChhhHHHHhhhccccC
Q 041597 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSI--AAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSK 106 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~--~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 106 (149)
..|||+|||| +++|+.++||+|||+|+++||||+++.. .++++|++|++||+||+||.+|+.||+++..+.
T Consensus 3 ~~d~y~~lgv-~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~ 75 (369)
T PRK14282 3 KKDYYEILGV-SRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGE 75 (369)
T ss_pred CCChHHhcCC-CCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcccc
Confidence 4699999999 9999999999999999999999999753 488999999999999999999999999987654
No 16
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=2.5e-21 Score=160.10 Aligned_cols=71 Identities=31% Similarity=0.484 Sum_probs=65.7
Q ss_pred ccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-hHHHHHHHHHHHHHhcCChhhHHHHhhhccccC
Q 041597 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSI-AAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSK 106 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~-~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 106 (149)
..|||+|||| +++|+.++||+|||+|+++||||+++.. .+.++|++|++||+||+|+.+|..||+++..+.
T Consensus 2 ~~d~y~iLgv-~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~ 73 (365)
T PRK14285 2 KRDYYEILGL-SKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAF 73 (365)
T ss_pred CCCHHHhcCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchh
Confidence 4699999999 9999999999999999999999999754 488999999999999999999999999987644
No 17
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=2.9e-21 Score=160.29 Aligned_cols=71 Identities=31% Similarity=0.504 Sum_probs=66.6
Q ss_pred ccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhccccC
Q 041597 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSK 106 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 106 (149)
..|||+|||| +++|+.+|||+|||+|+++||||+++...++++|++|++||++|+|+.+|..||++|.++.
T Consensus 4 ~~d~y~~Lgv-~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~ 74 (378)
T PRK14283 4 KRDYYEVLGV-DRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGM 74 (378)
T ss_pred cCChHHhhCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhccccc
Confidence 4699999999 9999999999999999999999999876689999999999999999999999999987654
No 18
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=6.5e-21 Score=158.60 Aligned_cols=72 Identities=33% Similarity=0.564 Sum_probs=66.0
Q ss_pred ccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-hHHHHHHHHHHHHHhcCChhhHHHHhhhccccCC
Q 041597 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSI-AAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSKK 107 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~-~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~ 107 (149)
..|||+|||| +++|+.++||+|||+|+++||||+++.. .++++|++|++||+||+||.+|..||++|..+..
T Consensus 4 ~~d~y~~Lgv-~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~ 76 (386)
T PRK14277 4 KKDYYEILGV-DRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFD 76 (386)
T ss_pred CCCHHHhcCC-CCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccccc
Confidence 3699999999 9999999999999999999999999853 4889999999999999999999999999976543
No 19
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=6e-21 Score=158.35 Aligned_cols=71 Identities=24% Similarity=0.447 Sum_probs=66.7
Q ss_pred cChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhccccCC
Q 041597 36 STRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSKK 107 (149)
Q Consensus 36 ~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~ 107 (149)
.|||+|||| +++|+.++||+|||+|+++||||+++...++++|++|++||+||+||.+|+.||++|..+..
T Consensus 4 ~~~y~iLgv-~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~ 74 (376)
T PRK14280 4 RDYYEVLGV-SKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPN 74 (376)
T ss_pred CChHHhhCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccc
Confidence 699999999 99999999999999999999999998777899999999999999999999999999976543
No 20
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.83 E-value=4.6e-21 Score=160.87 Aligned_cols=68 Identities=28% Similarity=0.499 Sum_probs=63.2
Q ss_pred ccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhccccC
Q 041597 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSK 106 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 106 (149)
..|||+|||| +++||.++||+|||+|+++||||+++. .++|++|++||+||+||.+|+.||+++..+.
T Consensus 27 ~~d~Y~vLGV-~~~As~~eIKkAYrkla~k~HPDk~~~---~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~ 94 (421)
T PTZ00037 27 NEKLYEVLNL-SKDCTTSEIKKAYRKLAIKHHPDKGGD---PEKFKEISRAYEVLSDPEKRKIYDEYGEEGL 94 (421)
T ss_pred chhHHHHcCC-CCCCCHHHHHHHHHHHHHHHCCCCCch---HHHHHHHHHHHHHhccHHHHHHHhhhcchhc
Confidence 4699999999 999999999999999999999999864 5899999999999999999999999987643
No 21
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=8.1e-21 Score=157.41 Aligned_cols=71 Identities=32% Similarity=0.558 Sum_probs=65.7
Q ss_pred ccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-hHHHHHHHHHHHHHhcCChhhHHHHhhhccccC
Q 041597 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSI-AAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSK 106 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~-~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 106 (149)
..|||+|||| +++|+.++||+|||+|+++||||+++.. .++++|++|++||+||+||.+|..||+++..+.
T Consensus 3 ~~~~y~~Lgv-~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~ 74 (373)
T PRK14301 3 QRDYYEVLGV-SRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGV 74 (373)
T ss_pred CCChHHhcCC-CCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccccc
Confidence 4699999999 9999999999999999999999999754 478999999999999999999999999997654
No 22
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=1.1e-20 Score=156.20 Aligned_cols=71 Identities=32% Similarity=0.567 Sum_probs=65.9
Q ss_pred ccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHhcCChhhHHHHhhhccccC
Q 041597 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPS-IAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSK 106 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 106 (149)
..|||+|||| +++|+.++||+|||+|+++||||+++. ..+++.|+.|++||+||+||.+|+.||++|.++.
T Consensus 3 ~~d~y~~lgv-~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~ 74 (366)
T PRK14294 3 KRDYYEILGV-TRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGL 74 (366)
T ss_pred CCChHHHhCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccc
Confidence 4699999999 999999999999999999999999985 3488999999999999999999999999997654
No 23
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=9.1e-21 Score=157.87 Aligned_cols=72 Identities=28% Similarity=0.441 Sum_probs=65.7
Q ss_pred CccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-hHHHHHHHHHHHHHhcCChhhHHHHhh----hccccC
Q 041597 34 MKSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSI-AAEGAFQIVQSAGDVLTNPEKREAYYR----RSFCSK 106 (149)
Q Consensus 34 ~~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~-~a~~~f~~i~~Ay~~L~d~~~R~~YD~----~~~~~~ 106 (149)
+..|||+|||| +++|+.++||+|||+|+++||||+++.. .++++|++|++||+||+||.+|+.||+ ++..+.
T Consensus 7 ~~~d~y~~Lgv-~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~ 83 (389)
T PRK14295 7 IEKDYYKVLGV-PKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGF 83 (389)
T ss_pred cccCHHHhcCC-CCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccccc
Confidence 35799999999 9999999999999999999999999754 488999999999999999999999999 776544
No 24
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.83 E-value=1.2e-20 Score=119.37 Aligned_cols=62 Identities=35% Similarity=0.679 Sum_probs=59.5
Q ss_pred ChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChh--HHHHHHHHHHHHHhcCChhhHHHHh
Q 041597 37 TRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIA--AEGAFQIVQSAGDVLTNPEKREAYY 99 (149)
Q Consensus 37 d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~--a~~~f~~i~~Ay~~L~d~~~R~~YD 99 (149)
|||+|||| +++++.++||++|+++++++|||++.... +.+.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl-~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGL-PPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTS-TTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCC-CCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 68999999 99999999999999999999999988765 8899999999999999999999998
No 25
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=9.9e-21 Score=158.03 Aligned_cols=72 Identities=36% Similarity=0.573 Sum_probs=66.1
Q ss_pred ccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-hHHHHHHHHHHHHHhcCChhhHHHHhhhccccCC
Q 041597 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSI-AAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSKK 107 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~-~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~ 107 (149)
..|||+|||| +++|+.++||+|||+|+++||||+++.. .++++|++|++||++|+|+.+|..||+++..+..
T Consensus 2 ~~d~y~iLgv-~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~ 74 (397)
T PRK14281 2 KRDYYEVLGV-SRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVG 74 (397)
T ss_pred CCChhhhcCC-CCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhc
Confidence 4699999999 9999999999999999999999999754 4789999999999999999999999999876543
No 26
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=1.1e-20 Score=156.95 Aligned_cols=70 Identities=27% Similarity=0.508 Sum_probs=65.4
Q ss_pred cChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-hHHHHHHHHHHHHHhcCChhhHHHHhhhccccC
Q 041597 36 STRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSI-AAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSK 106 (149)
Q Consensus 36 ~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~-~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 106 (149)
.|||+|||| +++|+.++||+|||+|+++||||+++.. .++++|++|++||+||+||.+|+.||++|..+.
T Consensus 4 ~d~y~~Lgv-~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~ 74 (380)
T PRK14297 4 KDYYEVLGL-EKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADF 74 (380)
T ss_pred CChHHhhCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccc
Confidence 699999999 9999999999999999999999999754 488999999999999999999999999987654
No 27
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.5e-20 Score=156.61 Aligned_cols=69 Identities=36% Similarity=0.548 Sum_probs=64.5
Q ss_pred ChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-hHHHHHHHHHHHHHhcCChhhHHHHhhhccccC
Q 041597 37 TRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSI-AAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSK 106 (149)
Q Consensus 37 d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~-~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 106 (149)
|||+|||| +++|+.++||+|||+|+++||||+++.. .++++|++|++||+||+|+.+|+.||+++..+.
T Consensus 2 d~y~iLgv-~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 71 (391)
T PRK14284 2 DYYTILGV-SKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGP 71 (391)
T ss_pred CHHHhcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccccc
Confidence 89999999 9999999999999999999999999854 488999999999999999999999999997643
No 28
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=3e-20 Score=153.87 Aligned_cols=71 Identities=32% Similarity=0.603 Sum_probs=65.5
Q ss_pred ccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-hHHHHHHHHHHHHHhcCChhhHHHHhhhccccC
Q 041597 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSI-AAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSK 106 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~-~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 106 (149)
..|||+|||| +++|+.++||+|||+|+++||||+++.. .++++|++|++||++|+|+.+|..||+++..+.
T Consensus 3 ~~d~y~iLgv-~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 74 (371)
T PRK10767 3 KRDYYEVLGV-SRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAF 74 (371)
T ss_pred CCChHHhcCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccccc
Confidence 4699999999 9999999999999999999999999743 488999999999999999999999999987654
No 29
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.82 E-value=4.9e-20 Score=151.71 Aligned_cols=70 Identities=31% Similarity=0.550 Sum_probs=65.2
Q ss_pred ChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhccccCC
Q 041597 37 TRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSKK 107 (149)
Q Consensus 37 d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~ 107 (149)
|||+|||| +++|+.++||+|||+|+++||||+++...+.++|++|++||+||+|+.+|..||+++..+..
T Consensus 1 d~y~~Lgv-~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~ 70 (354)
T TIGR02349 1 DYYEILGV-SKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFN 70 (354)
T ss_pred ChHHhCCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhccccccc
Confidence 79999999 99999999999999999999999998655889999999999999999999999999876543
No 30
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2.4e-20 Score=154.57 Aligned_cols=71 Identities=31% Similarity=0.445 Sum_probs=66.1
Q ss_pred ccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhccccC
Q 041597 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSK 106 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 106 (149)
..|||+|||| +++|+.++||+|||+|+++||||+++...++++|++|++||++|+|+.+|..||+++..+.
T Consensus 2 ~~~~y~iLgv-~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~ 72 (372)
T PRK14300 2 SQDYYQILGV-SKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAF 72 (372)
T ss_pred CCChHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhcccccc
Confidence 4699999999 9999999999999999999999999866688999999999999999999999999987654
No 31
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=5.2e-20 Score=152.19 Aligned_cols=71 Identities=30% Similarity=0.502 Sum_probs=65.6
Q ss_pred ccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh--hHHHHHHHHHHHHHhcCChhhHHHHhhhccccC
Q 041597 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSI--AAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSK 106 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~--~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 106 (149)
..|||+|||| +++|+.++||+|||+|++++|||+++.. .+.++|+.|++||++|+|+.+|..||++|..+.
T Consensus 2 ~~d~y~vLgv-~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~ 74 (365)
T PRK14290 2 AKDYYKILGV-DRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDF 74 (365)
T ss_pred CCChhhhcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCccc
Confidence 3699999999 9999999999999999999999999754 488999999999999999999999999987643
No 32
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=5.3e-20 Score=152.61 Aligned_cols=71 Identities=31% Similarity=0.507 Sum_probs=66.5
Q ss_pred ccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhccccC
Q 041597 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSK 106 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 106 (149)
..|||+|||| +++|+.++||+|||+|+++||||+++...+.++|+.|++||+||+||.+|+.||+++..+.
T Consensus 2 ~~d~y~vLgv-~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~ 72 (374)
T PRK14293 2 AADYYEILGV-SRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGV 72 (374)
T ss_pred CCChhhhcCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhcccccc
Confidence 4699999999 9999999999999999999999999876689999999999999999999999999987643
No 33
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4e-20 Score=153.55 Aligned_cols=77 Identities=35% Similarity=0.600 Sum_probs=69.2
Q ss_pred CCCccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChh--HHHHHHHHHHHHHhcCChhhHHHHhhhccccCCCC
Q 041597 32 PEMKSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIA--AEGAFQIVQSAGDVLTNPEKREAYYRRSFCSKKSK 109 (149)
Q Consensus 32 ~~~~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~--a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~ 109 (149)
..+.+.||+|||| .++++..+||++||+|||+||||+|+... ++++|++|+.||+|||||..|.+||....+-....
T Consensus 4 ~~~~~c~YE~L~v-~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~ 82 (508)
T KOG0717|consen 4 PFKKRCYYEVLGV-ERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGK 82 (508)
T ss_pred chhhhHHHHHhcc-cccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCC
Confidence 3456799999999 99999999999999999999999987654 89999999999999999999999999987555443
No 34
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=5.8e-20 Score=144.10 Aligned_cols=71 Identities=30% Similarity=0.485 Sum_probs=65.6
Q ss_pred ccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-hHHHHHHHHHHHHHhcCChhhHHHHhhhccccC
Q 041597 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSI-AAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSK 106 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~-~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 106 (149)
..|+|+|||| +++|+.++|||+||+|++++|||+++.. ++.++|++||+||+||+||.+|..||.+|.-+.
T Consensus 30 ~~~LYdVLgl-~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l 101 (279)
T KOG0716|consen 30 RLDLYDVLGL-PKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGL 101 (279)
T ss_pred hhHHHHHhCC-CcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHH
Confidence 4489999999 9999999999999999999999999884 599999999999999999999999999984443
No 35
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=8.8e-20 Score=151.08 Aligned_cols=69 Identities=29% Similarity=0.478 Sum_probs=65.6
Q ss_pred cChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhcccc
Q 041597 36 STRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCS 105 (149)
Q Consensus 36 ~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 105 (149)
.|||+|||| +++|+.++||+|||+|++++|||+++...+.++|++|++||+||+||.+|+.||++|..+
T Consensus 2 ~d~y~~Lgv-~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~ 70 (371)
T PRK14292 2 MDYYELLGV-SRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP 70 (371)
T ss_pred CChHHHcCC-CCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence 499999999 999999999999999999999999987778999999999999999999999999998764
No 36
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=1.5e-19 Score=150.41 Aligned_cols=71 Identities=32% Similarity=0.535 Sum_probs=65.7
Q ss_pred ccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-hHHHHHHHHHHHHHhcCChhhHHHHhhhccccC
Q 041597 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSI-AAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSK 106 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~-~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 106 (149)
..|||+|||| +++|+.+|||+|||+|+++||||+++.. .+.++|+.|++||++|+||.+|+.||+++..+.
T Consensus 4 ~~~~y~~Lgv-~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~ 75 (386)
T PRK14289 4 KRDYYEVLGV-SKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGV 75 (386)
T ss_pred cCCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccccc
Confidence 4699999999 9999999999999999999999999754 489999999999999999999999999987643
No 37
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=9.7e-20 Score=146.28 Aligned_cols=68 Identities=24% Similarity=0.415 Sum_probs=66.4
Q ss_pred ChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhcccc
Q 041597 37 TRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCS 105 (149)
Q Consensus 37 d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 105 (149)
|||+|||| +++|+..|||+||++|++++|||.+....+.++|+.|.+|||||+|+++|..||..+..+
T Consensus 44 d~Y~vLgv-~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 44 DYYKVLGV-SRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred chhhhhCc-CCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 99999999 999999999999999999999999999999999999999999999999999999999776
No 38
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.4e-19 Score=145.15 Aligned_cols=74 Identities=32% Similarity=0.541 Sum_probs=69.5
Q ss_pred ccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChh-HHHHHHHHHHHHHhcCChhhHHHHhhhccccCCCC
Q 041597 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIA-AEGAFQIVQSAGDVLTNPEKREAYYRRSFCSKKSK 109 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~-a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~ 109 (149)
..|||+|||| ...++..+|++|||+.+++||||+|+.++ +.+.|+.|.+||+||+|+..|..||..+..+..+.
T Consensus 4 ~~dyY~lLgi-~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~ 78 (296)
T KOG0691|consen 4 DTDYYDLLGI-SEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ 78 (296)
T ss_pred cchHHHHhCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch
Confidence 5699999999 99999999999999999999999999877 99999999999999999999999999997776654
No 39
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.4e-19 Score=150.53 Aligned_cols=72 Identities=32% Similarity=0.514 Sum_probs=67.5
Q ss_pred ccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChh----HHHHHHHHHHHHHhcCChhhHHHHhhhccccCC
Q 041597 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIA----AEGAFQIVQSAGDVLTNPEKREAYYRRSFCSKK 107 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~----a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~ 107 (149)
..|||.+|+| +++||.+||++|||++++.+||||...+. |++.|++|.+|||||+||.+|+.||.+|.++..
T Consensus 8 e~e~Ya~LNl-pkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 8 EIELYALLNL-PKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred hhhHHHHhCC-CcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 4599999999 99999999999999999999999987554 899999999999999999999999999988876
No 40
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.79 E-value=1.6e-19 Score=146.15 Aligned_cols=67 Identities=31% Similarity=0.469 Sum_probs=63.9
Q ss_pred cChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhcc
Q 041597 36 STRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRSF 103 (149)
Q Consensus 36 ~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 103 (149)
.|||+|||| +++++.++||+|||+|+++||||+++...+.++|++|++||++|+|+.+|..||+++.
T Consensus 4 ~d~y~~Lgv-~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 4 KDYYAIMGV-KPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred CChHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 599999999 9999999999999999999999998776799999999999999999999999999874
No 41
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4.4e-19 Score=146.28 Aligned_cols=101 Identities=25% Similarity=0.381 Sum_probs=94.4
Q ss_pred hHHHHHHHHhhCCCCccHHHHHHHHHHhccCCCccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh--hHHHHH
Q 041597 2 AIKQLKAAKDFNGNLPNLDDYFTAYRVHQLPEMKSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSI--AAEGAF 79 (149)
Q Consensus 2 A~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~--~a~~~f 79 (149)
||+++++|-++..+ -.+.+++.....-+......|||+|||| .++++..+||++||++++.||||++... +++.+|
T Consensus 340 AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkRkd~ykilGi-~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kF 417 (486)
T KOG0550|consen 340 AVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKRKDWYKILGI-SRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKF 417 (486)
T ss_pred HHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhhhhHHHHhhh-hhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHH
Confidence 79999999999999 8899999999999999999999999999 9999999999999999999999998766 388999
Q ss_pred HHHHHHHHhcCChhhHHHHhhhccc
Q 041597 80 QIVQSAGDVLTNPEKREAYYRRSFC 104 (149)
Q Consensus 80 ~~i~~Ay~~L~d~~~R~~YD~~~~~ 104 (149)
++|.+||.+|+||.+|..||..-.-
T Consensus 418 kevgeAy~il~d~~kr~r~dsg~dl 442 (486)
T KOG0550|consen 418 KEVGEAYTILSDPMKRVRFDSGQDL 442 (486)
T ss_pred HHHHHHHHHhcCHHHHhhcccccch
Confidence 9999999999999999999987633
No 42
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.77 E-value=6.5e-19 Score=157.09 Aligned_cols=72 Identities=22% Similarity=0.330 Sum_probs=67.3
Q ss_pred ccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhccccCC
Q 041597 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSKK 107 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~ 107 (149)
..+||+|||| +++|+..+||+|||+||++||||+++...+.++|+.|++||+||+||.+|..||++|..+..
T Consensus 572 d~dYYdILGV-s~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~ 643 (1136)
T PTZ00341 572 DTLFYDILGV-GVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIK 643 (1136)
T ss_pred CCChHHHcCC-CCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccC
Confidence 4599999999 99999999999999999999999998777889999999999999999999999999977544
No 43
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.9e-18 Score=133.19 Aligned_cols=69 Identities=33% Similarity=0.552 Sum_probs=63.6
Q ss_pred CccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChh---HHHHHHHHHHHHHhcCChhhHHHHhhhcc
Q 041597 34 MKSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIA---AEGAFQIVQSAGDVLTNPEKREAYYRRSF 103 (149)
Q Consensus 34 ~~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~---a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 103 (149)
+..|+|+|||| .++|+..+|++||++|++++|||+++... +++.|+.|+.||.||+|.++|+.||..|.
T Consensus 12 ~~~d~YevLGV-er~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~ 83 (264)
T KOG0719|consen 12 NKKDLYEVLGV-ERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS 83 (264)
T ss_pred cccCHHHHhhh-cccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence 45599999999 99999999999999999999999996433 89999999999999999999999998873
No 44
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.75 E-value=3.3e-18 Score=106.52 Aligned_cols=57 Identities=39% Similarity=0.669 Sum_probs=53.1
Q ss_pred cChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--ChhHHHHHHHHHHHHHhcCChh
Q 041597 36 STRYDILAITDPEVDNITVKKQYKRLALMLHPEKNP--SIAAEGAFQIVQSAGDVLTNPE 93 (149)
Q Consensus 36 ~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~--~~~a~~~f~~i~~Ay~~L~d~~ 93 (149)
.|||+|||| +++++.++||++|+++++++|||++. ...+.+.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl-~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGV-PRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 389999999 99999999999999999999999998 4458999999999999999985
No 45
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.74 E-value=7.5e-18 Score=103.06 Aligned_cols=54 Identities=41% Similarity=0.735 Sum_probs=51.2
Q ss_pred ChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHhcCC
Q 041597 37 TRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPS-IAAEGAFQIVQSAGDVLTN 91 (149)
Q Consensus 37 d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~-~~a~~~f~~i~~Ay~~L~d 91 (149)
|||+|||| +++++.++||++|++|++++|||++.. ..+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl-~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGV-PPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 79999999 999999999999999999999999987 5589999999999999986
No 46
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.70 E-value=4e-17 Score=143.05 Aligned_cols=71 Identities=32% Similarity=0.575 Sum_probs=66.0
Q ss_pred cChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhccccCC
Q 041597 36 STRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSKK 107 (149)
Q Consensus 36 ~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~ 107 (149)
.|||+|||| +++|+.++||++||+|++++|||+++...+.++|+.|++||++|+||.+|..||.++..+..
T Consensus 2 ~DYYeVLGV-s~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d 72 (871)
T TIGR03835 2 RDYYEVLGI-DRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGVD 72 (871)
T ss_pred CChhHhcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccc
Confidence 599999999 99999999999999999999999998766888999999999999999999999999865543
No 47
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=6.8e-17 Score=121.81 Aligned_cols=68 Identities=34% Similarity=0.615 Sum_probs=63.7
Q ss_pred CccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChh--HHHHHHHHHHHHHhcCChhhHHHHhhhc
Q 041597 34 MKSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIA--AEGAFQIVQSAGDVLTNPEKREAYYRRS 102 (149)
Q Consensus 34 ~~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~--a~~~f~~i~~Ay~~L~d~~~R~~YD~~~ 102 (149)
+..+||+|||| .++++..+|+++||++++++|||+++... +.+.|+.|++||++|+|+.+|..||+.+
T Consensus 4 ~~~~~y~iLgv-~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 4 DLLDYYEILGV-PPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhhHHHHhCC-CCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 34699999999 99999999999999999999999998765 7899999999999999999999999974
No 48
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=6.4e-17 Score=123.52 Aligned_cols=69 Identities=30% Similarity=0.544 Sum_probs=64.3
Q ss_pred ChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-hHHHHHHHHHHHHHhcCChhhHHHHhhhccccC
Q 041597 37 TRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSI-AAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSK 106 (149)
Q Consensus 37 d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~-~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 106 (149)
|+|+|||| +++++..|||+|||+|++++||||++.. +.++.|..|++||+.|+|+..|..|..+|...+
T Consensus 100 DPyEILGl-~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDG 169 (230)
T KOG0721|consen 100 DPYEILGL-DPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDG 169 (230)
T ss_pred CcHHhhCC-CCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCC
Confidence 99999999 9999999999999999999999999874 478889999999999999999999999986554
No 49
>PHA03102 Small T antigen; Reviewed
Probab=99.68 E-value=6.1e-17 Score=118.92 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=63.3
Q ss_pred cChhhhcCCCCCCC--CHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhccccCCCC
Q 041597 36 STRYDILAITDPEV--DNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSKKSK 109 (149)
Q Consensus 36 ~d~Y~iLgv~~~~a--s~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~ 109 (149)
..+|+|||| +++| |.++||+|||++++++|||++++ .++|+.|++||++|+|+.+|..||.++.....+.
T Consensus 5 ~~l~~vLGl-~~~A~~s~~eIKkAYr~la~~~HPDkgg~---~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~ 76 (153)
T PHA03102 5 KELMDLLGL-PRSAWGNLPLMRKAYLRKCLEFHPDKGGD---EEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEE 76 (153)
T ss_pred HHHHHHcCC-CCCCCCCHHHHHHHHHHHHHHHCcCCCch---hHHHHHHHHHHHHHhhHHHhccccccCCcccccc
Confidence 367999999 9999 99999999999999999999764 5899999999999999999999999986665543
No 50
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.63 E-value=8.6e-16 Score=114.56 Aligned_cols=67 Identities=21% Similarity=0.288 Sum_probs=58.7
Q ss_pred cChhhhcCCCCCC--CCHHHHHHHHHHHHHHhCCCCCCChh----HHHHHHHHHHHHHhcCChhhHHHHhhhcc
Q 041597 36 STRYDILAITDPE--VDNITVKKQYKRLALMLHPEKNPSIA----AEGAFQIVQSAGDVLTNPEKREAYYRRSF 103 (149)
Q Consensus 36 ~d~Y~iLgv~~~~--as~~~Ik~ayr~l~~~~HPD~~~~~~----a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 103 (149)
.|||+|||| ++. ++..+|+++||++++++|||++.... +.+.+..|++||+||+||.+|+.|+....
T Consensus 2 ~~yf~llgl-~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~ 74 (166)
T PRK01356 2 QNYFQLLGL-PQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ 74 (166)
T ss_pred CCHHHHcCC-CCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence 599999999 875 78999999999999999999987533 34568899999999999999999987664
No 51
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.63 E-value=9.3e-16 Score=114.88 Aligned_cols=66 Identities=20% Similarity=0.358 Sum_probs=58.3
Q ss_pred ChhhhcCCCCCC--CCHHHHHHHHHHHHHHhCCCCCCChh------HHHHHHHHHHHHHhcCChhhHHHHhhhcc
Q 041597 37 TRYDILAITDPE--VDNITVKKQYKRLALMLHPEKNPSIA------AEGAFQIVQSAGDVLTNPEKREAYYRRSF 103 (149)
Q Consensus 37 d~Y~iLgv~~~~--as~~~Ik~ayr~l~~~~HPD~~~~~~------a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 103 (149)
|||+|||| ++. ++..+|+++||++++++|||+..... +.+.|..|++||++|+||.+|..|+-...
T Consensus 2 ~yf~llgl-~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~ 75 (171)
T PRK05014 2 DYFTLFGL-PARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLH 75 (171)
T ss_pred CHHHHCCC-CCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhc
Confidence 89999999 885 78899999999999999999976432 56789999999999999999999986544
No 52
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.58 E-value=5.7e-15 Score=111.09 Aligned_cols=68 Identities=18% Similarity=0.324 Sum_probs=58.6
Q ss_pred ccChhhhcCCCCCC--CCHHHHHHHHHHHHHHhCCCCCCChh------HHHHHHHHHHHHHhcCChhhHHHHhhhcc
Q 041597 35 KSTRYDILAITDPE--VDNITVKKQYKRLALMLHPEKNPSIA------AEGAFQIVQSAGDVLTNPEKREAYYRRSF 103 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~--as~~~Ik~ayr~l~~~~HPD~~~~~~------a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 103 (149)
..|||+|||| ++. ++..+|+++||+|++++|||++.... +.+.+..||+||++|+||.+|..|+....
T Consensus 5 ~~dyf~llgl-p~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~ 80 (176)
T PRK03578 5 KDDHFSLFGL-PARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLR 80 (176)
T ss_pred CCCHHHHcCC-CCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhc
Confidence 4699999999 874 68999999999999999999986433 34557899999999999999999997554
No 53
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.58 E-value=6.9e-15 Score=110.31 Aligned_cols=68 Identities=19% Similarity=0.343 Sum_probs=60.0
Q ss_pred ccChhhhcCCCCCC--CCHHHHHHHHHHHHHHhCCCCCCChh------HHHHHHHHHHHHHhcCChhhHHHHhhhcc
Q 041597 35 KSTRYDILAITDPE--VDNITVKKQYKRLALMLHPEKNPSIA------AEGAFQIVQSAGDVLTNPEKREAYYRRSF 103 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~--as~~~Ik~ayr~l~~~~HPD~~~~~~------a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 103 (149)
..|||++||| ++. .+..+|+++||+|++++|||++.... +.+.+..||+||+||+||.+|+.|+-...
T Consensus 3 ~~~~F~l~~l-~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~ 78 (173)
T PRK00294 3 TPCHFALFDL-QPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS 78 (173)
T ss_pred CCChhhhcCc-CCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 4699999999 886 67899999999999999999986543 56789999999999999999999997654
No 54
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.9e-15 Score=124.74 Aligned_cols=67 Identities=30% Similarity=0.466 Sum_probs=64.9
Q ss_pred ccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhc
Q 041597 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRS 102 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~ 102 (149)
.+|+|.+||| +.+++.++||+.||++|...|||||..+.|+|.|+.|+.||++|+|+++|..||...
T Consensus 234 ~~daYsvlGl-~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~ 300 (490)
T KOG0720|consen 234 ILDAYSALGL-PSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLEL 300 (490)
T ss_pred CCCchhhcCC-CCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 6799999999 999999999999999999999999998889999999999999999999999999876
No 55
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=3.1e-15 Score=117.69 Aligned_cols=73 Identities=38% Similarity=0.577 Sum_probs=65.7
Q ss_pred CccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh--hHHHHHHHHHHHHHhcCChhhHHHHhhhccccCC
Q 041597 34 MKSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSI--AAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSKK 107 (149)
Q Consensus 34 ~~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~--~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~ 107 (149)
+..|||+||+| .++|+.++|++||+++++++|||+++.. .+.++|++|.+||++|+|+.+|..||+++.++..
T Consensus 1 ~~~d~~~~l~i-~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~ 75 (306)
T KOG0714|consen 1 MGKDYYKILGI-ARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLK 75 (306)
T ss_pred CcccHHHHhCc-cccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccc
Confidence 35699999999 9999999999999999999999998877 4666899999999999999999999999984333
No 56
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=7.1e-15 Score=114.96 Aligned_cols=67 Identities=25% Similarity=0.444 Sum_probs=63.7
Q ss_pred ccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhc
Q 041597 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRS 102 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~ 102 (149)
..|.|+|||| .++++..+|.+|||+|++++|||++.+.++.+.|+.|..||++|.|.+.|..||-..
T Consensus 32 ~enCYdVLgV-~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyal 98 (329)
T KOG0722|consen 32 AENCYDVLGV-AREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYAL 98 (329)
T ss_pred chhHHHHhhh-hhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHh
Confidence 3499999999 999999999999999999999999999988999999999999999999999999665
No 57
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.51 E-value=8.8e-14 Score=97.65 Aligned_cols=51 Identities=31% Similarity=0.417 Sum_probs=47.0
Q ss_pred cChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcC
Q 041597 36 STRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLT 90 (149)
Q Consensus 36 ~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~ 90 (149)
.++|+|||| +++++.++|+++||+|++++|||+..+ .+.|++|++||++|.
T Consensus 65 ~eAy~ILGv-~~~As~~eIkkaYRrLa~~~HPDkgGs---~~~~~kIneAyevL~ 115 (116)
T PTZ00100 65 SEAYKILNI-SPTASKERIREAHKQLMLRNHPDNGGS---TYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHcCC-CCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHHh
Confidence 499999999 999999999999999999999998643 678999999999984
No 58
>PHA02624 large T antigen; Provisional
Probab=99.43 E-value=6.4e-13 Score=115.24 Aligned_cols=61 Identities=20% Similarity=0.205 Sum_probs=56.7
Q ss_pred CccChhhhcCCCCCCC--CHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHH
Q 041597 34 MKSTRYDILAITDPEV--DNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAY 98 (149)
Q Consensus 34 ~~~d~Y~iLgv~~~~a--s~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Y 98 (149)
...++|+|||| +++| +.++||+|||++++++|||++.+ .+.|++|++||++|+|+.+|..|
T Consensus 9 e~~elyelLGL-~~~A~gs~~eIKkAYRkLAkkyHPDKgGd---eekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 9 ESKELMDLLGL-PMAAWGNLPLMRKAYLRKCKEYHPDKGGD---EEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHHcCC-CCCCCCCHHHHHHHHHHHHHHHCcCCCCc---HHHHHHHHHHHHHHhcHHHhhhc
Confidence 34589999999 9999 99999999999999999999754 68999999999999999999998
No 59
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.41 E-value=2.9e-13 Score=107.88 Aligned_cols=55 Identities=24% Similarity=0.402 Sum_probs=49.6
Q ss_pred cChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--------hhHHHHHHHHHHHHHhcCC
Q 041597 36 STRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPS--------IAAEGAFQIVQSAGDVLTN 91 (149)
Q Consensus 36 ~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~--------~~a~~~f~~i~~Ay~~L~d 91 (149)
.++|+|||| ++++|.++||++||+|+++||||++.. ..++++|+.|++||++|+.
T Consensus 200 ~~ay~vLgv-~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 200 EDAYKVLGV-SESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HhHHHHcCC-CCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 499999999 999999999999999999999999643 1278999999999999964
No 60
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.37 E-value=2.1e-12 Score=96.95 Aligned_cols=67 Identities=19% Similarity=0.261 Sum_probs=59.0
Q ss_pred cChhhhcCCCCCC--CCHHHHHHHHHHHHHHhCCCCCCChh------HHHHHHHHHHHHHhcCChhhHHHHhhhcc
Q 041597 36 STRYDILAITDPE--VDNITVKKQYKRLALMLHPEKNPSIA------AEGAFQIVQSAGDVLTNPEKREAYYRRSF 103 (149)
Q Consensus 36 ~d~Y~iLgv~~~~--as~~~Ik~ayr~l~~~~HPD~~~~~~------a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 103 (149)
.|||++||| ++. .+...++++|++|.+++|||+..... +.+....||+||.||+||.+|+.|=-...
T Consensus 2 ~nyF~lf~l-p~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 2 NNPFALFDL-PVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CChHHhcCC-CCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 599999999 885 89999999999999999999976543 56678999999999999999999976554
No 61
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2.1e-12 Score=97.92 Aligned_cols=86 Identities=29% Similarity=0.511 Sum_probs=70.0
Q ss_pred HHHHhhCCCCccHHHHHHHHHHhccCCCccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChh--HHHHHHHHHH
Q 041597 7 KAAKDFNGNLPNLDDYFTAYRVHQLPEMKSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIA--AEGAFQIVQS 84 (149)
Q Consensus 7 ~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~--a~~~f~~i~~ 84 (149)
++.......-..|++|+..-..++ ..|+|+||.| .+..+.++||+.||+|++..|||+|+.+. |...|..|.+
T Consensus 28 ek~d~vLts~~qIeRllrpgstyf----nLNpfeVLqI-dpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkK 102 (250)
T KOG1150|consen 28 EKRDSVLTSKQQIERLLRPGSTYF----NLNPFEVLQI-DPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKK 102 (250)
T ss_pred hhhhcccCcHHHHHHHhcCCcccc----ccChHHHHhc-CCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHH
Confidence 444444445566777765444444 3699999999 99999999999999999999999999874 8999999999
Q ss_pred HHHhcCChhhHHH
Q 041597 85 AGDVLTNPEKREA 97 (149)
Q Consensus 85 Ay~~L~d~~~R~~ 97 (149)
||..|-|+..|..
T Consensus 103 A~k~l~n~~~rkr 115 (250)
T KOG1150|consen 103 AYKLLENDKIRKR 115 (250)
T ss_pred HHHHHhCHHHHHH
Confidence 9999999875543
No 62
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.29 E-value=7e-12 Score=104.82 Aligned_cols=72 Identities=28% Similarity=0.497 Sum_probs=64.7
Q ss_pred ccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hh---HHHHHHHHHHHHHhcCChhhHHHHhhhccccCC
Q 041597 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPS---IA---AEGAFQIVQSAGDVLTNPEKREAYYRRSFCSKK 107 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~---~~---a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~ 107 (149)
.-|+|+|||| +.+++..+||++||+|+.++||||.+. .. -++.++.|++||+.|+|...|..|-.+|.....
T Consensus 97 ~fDPyEILGI-~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~p 174 (610)
T COG5407 97 GFDPYEILGI-DQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSP 174 (610)
T ss_pred CCChHHhhcc-cCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCC
Confidence 3499999999 999999999999999999999999876 11 678999999999999999999999999865554
No 63
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=3.2e-12 Score=101.01 Aligned_cols=78 Identities=21% Similarity=0.307 Sum_probs=68.0
Q ss_pred CccChhhhcCCC--CCCCCHHHHHHHHHHHHHHhCCCCCCCh---hHHHHHHHHHHHHHhcCChhhHHHHhhhccccCCC
Q 041597 34 MKSTRYDILAIT--DPEVDNITVKKQYKRLALMLHPEKNPSI---AAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSKKS 108 (149)
Q Consensus 34 ~~~d~Y~iLgv~--~~~as~~~Ik~ayr~l~~~~HPD~~~~~---~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~ 108 (149)
...|+|.+|||+ .-.+++.+|.++.++.+.+||||+.... ...+.|++|+.||+||+|+.+|..||...+...+|
T Consensus 41 k~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~advp 120 (379)
T COG5269 41 KKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDADVP 120 (379)
T ss_pred hhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccccccCCC
Confidence 346999999994 3378999999999999999999997332 27899999999999999999999999999888888
Q ss_pred CCC
Q 041597 109 KAG 111 (149)
Q Consensus 109 ~~~ 111 (149)
++-
T Consensus 121 pp~ 123 (379)
T COG5269 121 PPR 123 (379)
T ss_pred Ccc
Confidence 764
No 64
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.20 E-value=4.2e-11 Score=88.61 Aligned_cols=55 Identities=24% Similarity=0.289 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCChh------HHHHHHHHHHHHHhcCChhhHHHHhhhcc
Q 041597 49 VDNITVKKQYKRLALMLHPEKNPSIA------AEGAFQIVQSAGDVLTNPEKREAYYRRSF 103 (149)
Q Consensus 49 as~~~Ik~ayr~l~~~~HPD~~~~~~------a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 103 (149)
.+..+|+++|+++++++|||+..... +.+.+..|++||++|+||.+|+.|+....
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 47899999999999999999965432 56889999999999999999999998765
No 65
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.4e-07 Score=86.01 Aligned_cols=52 Identities=29% Similarity=0.530 Sum_probs=45.5
Q ss_pred ChhhhcCCC---CCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcC
Q 041597 37 TRYDILAIT---DPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLT 90 (149)
Q Consensus 37 d~Y~iLgv~---~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~ 90 (149)
+-|+||.|+ .+....+.||++|++|+.+||||||+. ..+.|..|++|||.|+
T Consensus 1282 ~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE--GRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1282 LAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE--GREMFERVNKAYELLS 1336 (2235)
T ss_pred HHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch--HHHHHHHHHHHHHHHH
Confidence 789999994 223455889999999999999999987 5899999999999998
No 66
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=6.6e-08 Score=75.36 Aligned_cols=55 Identities=24% Similarity=0.375 Sum_probs=51.0
Q ss_pred cChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHH-hcCC
Q 041597 36 STRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGD-VLTN 91 (149)
Q Consensus 36 ~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~-~L~d 91 (149)
..+|.|||| ..+|+.++++.+|..|++.+|||...+....++|..|.+||. ||+.
T Consensus 47 ~e~fril~v-~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 47 MECFRILGV-EEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHhcc-cccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 489999999 999999999999999999999999888778899999999998 7753
No 67
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=4e-07 Score=62.66 Aligned_cols=63 Identities=25% Similarity=0.374 Sum_probs=50.0
Q ss_pred HHHhccCCCcc-ChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCCh
Q 041597 26 YRVHQLPEMKS-TRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNP 92 (149)
Q Consensus 26 ~~~~~~~~~~~-d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~ 92 (149)
++-.+...|.+ .--.|||| .++++.+.||+++||+.+..|||+..++- .-..|+||+++|...
T Consensus 45 y~GGF~~kMsr~EA~lIL~v-~~s~~k~KikeaHrriM~~NHPD~GGSPY---lAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 45 YKGGFEPKMSRREAALILGV-TPSLDKDKIKEAHRRIMLANHPDRGGSPY---LASKINEAKDLLEGT 108 (112)
T ss_pred hhcccccccchHHHHHHhCC-CccccHHHHHHHHHHHHHcCCCcCCCCHH---HHHHHHHHHHHHhcc
Confidence 34444444443 66679999 99999999999999999999999998875 334599999999643
No 68
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=98.11 E-value=9.7e-06 Score=69.17 Aligned_cols=71 Identities=23% Similarity=0.346 Sum_probs=57.2
Q ss_pred CCccHHHHHHHHHHhccCCCccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChh--------HHHHHHHHHHHH
Q 041597 15 NLPNLDDYFTAYRVHQLPEMKSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIA--------AEGAFQIVQSAG 86 (149)
Q Consensus 15 ~~~~i~~~~~~~~~~~~~~~~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~--------a~~~f~~i~~Ay 86 (149)
--.+|+.||..++..+...-+ ++=+.| ..=++.++||++|||.++..||||.+..+ +++.|-.+++||
T Consensus 370 KE~NIRALLSTLh~VLW~es~---WqpVsl-tDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eaw 445 (453)
T KOG0431|consen 370 KEGNIRALLSTLHYVLWPESG---WQPVSL-TDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAW 445 (453)
T ss_pred ccccHHHHHHHHhHhhcCccC---cccCch-hhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHH
Confidence 358899999999999887433 455666 77789999999999999999999987653 567777778887
Q ss_pred Hhc
Q 041597 87 DVL 89 (149)
Q Consensus 87 ~~L 89 (149)
...
T Consensus 446 n~f 448 (453)
T KOG0431|consen 446 NKF 448 (453)
T ss_pred Hhh
Confidence 654
No 69
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=1.5e-05 Score=58.55 Aligned_cols=71 Identities=23% Similarity=0.301 Sum_probs=56.1
Q ss_pred CccChhhhcCCC-CCCCCHHHHHHHHHHHHHHhCCCCCCChh------HHHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 041597 34 MKSTRYDILAIT-DPEVDNITVKKQYKRLALMLHPEKNPSIA------AEGAFQIVQSAGDVLTNPEKREAYYRRSFC 104 (149)
Q Consensus 34 ~~~d~Y~iLgv~-~~~as~~~Ik~ayr~l~~~~HPD~~~~~~------a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 104 (149)
..++||.++|.. .....+..++.-|.-..+++|||+..... +.+....|++||.+|.||..|+.|=.....
T Consensus 6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g 83 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKG 83 (168)
T ss_pred hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 346999999872 33556677777999999999999943322 788899999999999999999999765533
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.00038 Score=52.16 Aligned_cols=53 Identities=23% Similarity=0.384 Sum_probs=45.9
Q ss_pred cChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChh--------HHHHHHHHHHHHHhc
Q 041597 36 STRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIA--------AEGAFQIVQSAGDVL 89 (149)
Q Consensus 36 ~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~--------a~~~f~~i~~Ay~~L 89 (149)
.+.|.+|++ .......+|+++|+++....|||+..... +.+.++.|++||+.+
T Consensus 113 ~~~l~~l~~-~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGV-EIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcC-chhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 589999999 99999999999999999999999854332 678888899998754
No 71
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0006 Score=51.09 Aligned_cols=65 Identities=22% Similarity=0.254 Sum_probs=49.9
Q ss_pred hhhhcCCCCCCC--CHHHHHHHHHHHHHHhCCCCCCChh------HHHHHHHHHHHHHhcCChhhHHHHhhhcc
Q 041597 38 RYDILAITDPEV--DNITVKKQYKRLALMLHPEKNPSIA------AEGAFQIVQSAGDVLTNPEKREAYYRRSF 103 (149)
Q Consensus 38 ~Y~iLgv~~~~a--s~~~Ik~ayr~l~~~~HPD~~~~~~------a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 103 (149)
++..+|+ .+.+ ..+.++..|+.+.+.+|||+..... +.+.+..++.||.+|.+|.+|..|=....
T Consensus 3 ~~~~~~~-~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 3 GFVLFGL-PRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred ccccccc-HHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 3444444 4422 4555899999999999999976654 45679999999999999999999976544
No 72
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=96.42 E-value=0.008 Score=43.01 Aligned_cols=53 Identities=25% Similarity=0.234 Sum_probs=38.9
Q ss_pred ChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChh
Q 041597 37 TRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPE 93 (149)
Q Consensus 37 d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~ 93 (149)
.-..|||| ++..+.++|.+.|.+|-...+|++..+. -.-..|..|.+.|..+.
T Consensus 59 EA~~ILnv-~~~~~~eeI~k~y~~Lf~~Nd~~kGGSf---YLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 59 EARQILNV-KEELSREEIQKRYKHLFKANDPSKGGSF---YLQSKVFRAKERLEQEL 111 (127)
T ss_dssp HHHHHHT---G--SHHHHHHHHHHHHHHT-CCCTS-H---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCC-CCccCHHHHHHHHHHHHhccCCCcCCCH---HHHHHHHHHHHHHHHHH
Confidence 56799999 9999999999999999999999988763 45556888888885443
No 73
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=90.67 E-value=0.28 Score=40.08 Aligned_cols=54 Identities=24% Similarity=0.353 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCC-----hhHHHHHHHHHHHHHhcCChhhHHHHhhhc
Q 041597 49 VDNITVKKQYKRLALMLHPEKNPS-----IAAEGAFQIVQSAGDVLTNPEKREAYYRRS 102 (149)
Q Consensus 49 as~~~Ik~ayr~l~~~~HPD~~~~-----~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~ 102 (149)
++..+|..+|+..++.+||++... ....+.++.|.+||++|.+..+|...|...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 567889999999999999998752 226778999999999999866555555443
No 74
>PF13446 RPT: A repeated domain in UCH-protein
Probab=87.76 E-value=1.9 Score=26.45 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=24.1
Q ss_pred ChhhhcCCCCCCCCHHHHHHHHHHHHH
Q 041597 37 TRYDILAITDPEVDNITVKKQYKRLAL 63 (149)
Q Consensus 37 d~Y~iLgv~~~~as~~~Ik~ayr~l~~ 63 (149)
+-|++||| +++.+.+.|-.+|+....
T Consensus 6 ~Ay~~Lgi-~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 6 EAYEILGI-DEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHhCc-CCCCCHHHHHHHHHHHHH
Confidence 56999999 999999999999999877
No 75
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=86.51 E-value=1.7 Score=30.33 Aligned_cols=46 Identities=13% Similarity=0.249 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCChh-----HHHHHHHHHHHHHhcCC
Q 041597 46 DPEVDNITVKKQYKRLALMLHPEKNPSIA-----AEGAFQIVQSAGDVLTN 91 (149)
Q Consensus 46 ~~~as~~~Ik~ayr~l~~~~HPD~~~~~~-----a~~~f~~i~~Ay~~L~d 91 (149)
.+..+..+++.+.|.+.++.|||...... .++-++.|+.-.+.|..
T Consensus 3 ~r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~ 53 (112)
T PF14687_consen 3 TRNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKK 53 (112)
T ss_pred chhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhc
Confidence 34567788999999999999999865543 34456667766666653
No 76
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=84.36 E-value=2.8 Score=32.07 Aligned_cols=37 Identities=14% Similarity=0.175 Sum_probs=29.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhc
Q 041597 46 DPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVL 89 (149)
Q Consensus 46 ~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L 89 (149)
+++|+.|||.+|+.++..+|--| ++.-..|..||+.|
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd-------~~~~~~IEaAYD~I 37 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD-------EKSREAIEAAYDAI 37 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHH
Confidence 47899999999999999988332 34555699999854
No 77
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=81.40 E-value=9.7 Score=24.79 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=34.9
Q ss_pred cChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHH
Q 041597 36 STRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQ 83 (149)
Q Consensus 36 ~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~ 83 (149)
+|--+++|+ ++-++..||+.+-++.++++.--..++....+.|..-.
T Consensus 3 RNIk~Lfnf-dPPAT~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe~AV 49 (88)
T COG5552 3 RNIKELFNF-DPPATPVEVRDAALQFVRKLSGTTHPSAANAEAFEAAV 49 (88)
T ss_pred cchHHHhCC-CCCCCcHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHH
Confidence 455678899 99999999999999999988666555544455554433
No 78
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.57 E-value=23 Score=25.32 Aligned_cols=50 Identities=20% Similarity=0.192 Sum_probs=36.7
Q ss_pred ChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcC
Q 041597 37 TRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLT 90 (149)
Q Consensus 37 d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~ 90 (149)
.--.||+| ....+.++|.+.|..|-....+.+..+- -.-..|-.|-|-|.
T Consensus 60 Ea~qILnV-~~~ln~eei~k~yehLFevNdkskGGSF---YLQSKVfRAkErld 109 (132)
T KOG3442|consen 60 EAQQILNV-KEPLNREEIEKRYEHLFEVNDKSKGGSF---YLQSKVFRAKERLD 109 (132)
T ss_pred HHhhHhCC-CCCCCHHHHHHHHHHHHhccCcccCcce---eehHHHHHHHHHHH
Confidence 34689999 9999999999999999988777766542 22233555666553
No 79
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=61.86 E-value=5.5 Score=17.27 Aligned_cols=13 Identities=31% Similarity=0.439 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhcC
Q 041597 78 AFQIVQSAGDVLT 90 (149)
Q Consensus 78 ~f~~i~~Ay~~L~ 90 (149)
.|..|..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4677888888764
No 80
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=60.38 E-value=11 Score=31.20 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=34.9
Q ss_pred HHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhh
Q 041597 56 KQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYR 100 (149)
Q Consensus 56 ~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~ 100 (149)
+..||...+-.||.+. .|+.++|-+-|..|++.+||-.+|.
T Consensus 75 q~~RRkma~qnP~mHN----SEISK~LG~~WK~Lse~EKrPFi~E 115 (331)
T KOG0527|consen 75 QGQRRKLAKQNPKMHN----SEISKRLGAEWKLLSEEEKRPFVDE 115 (331)
T ss_pred HHHHHHHHHhCcchhh----HHHHHHHHHHHhhcCHhhhccHHHH
Confidence 4567777778898864 4899999999999999999999985
No 81
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=56.45 E-value=28 Score=21.66 Aligned_cols=42 Identities=26% Similarity=0.271 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhh
Q 041597 56 KQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRR 101 (149)
Q Consensus 56 ~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~ 101 (149)
+..|...+.-||+.. ..+..+.|.+.|..|++.++...++..
T Consensus 14 ~~~r~~~~~~~p~~~----~~eisk~l~~~Wk~ls~~eK~~y~~~a 55 (72)
T cd01388 14 KRHRRKVLQEYPLKE----NRAISKILGDRWKALSNEEKQPYYEEA 55 (72)
T ss_pred HHHHHHHHHHCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344566667788853 357888899999999988877665543
No 82
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=54.82 E-value=42 Score=19.71 Aligned_cols=43 Identities=12% Similarity=0.072 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhh
Q 041597 55 KKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRR 101 (149)
Q Consensus 55 k~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~ 101 (149)
.+.++...+.-||+.+ ..+....|.+.|..|++.++....+..
T Consensus 12 ~~~~~~~~~~~~~~~~----~~~i~~~~~~~W~~l~~~~k~~y~~~a 54 (66)
T cd00084 12 SQEHRAEVKAENPGLS----VGEISKILGEMWKSLSEEEKKKYEEKA 54 (66)
T ss_pred HHHHHHHHHHHCcCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4456666777888843 467888999999999987666655543
No 83
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=54.79 E-value=57 Score=21.25 Aligned_cols=44 Identities=14% Similarity=0.178 Sum_probs=32.8
Q ss_pred ChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHH
Q 041597 37 TRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQI 81 (149)
Q Consensus 37 d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~ 81 (149)
|--.+.|+ .+-++.+||..|-.+.++|..=-..++....+.|..
T Consensus 4 nI~~L~~f-ePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~ 47 (78)
T PF10041_consen 4 NIKTLRNF-EPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDR 47 (78)
T ss_pred chhhhcCC-CCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHH
Confidence 33456678 899999999999999999987666665544455543
No 84
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=53.78 E-value=13 Score=29.16 Aligned_cols=58 Identities=24% Similarity=0.242 Sum_probs=36.8
Q ss_pred ChHHHHHHHHhhCCC-CccHHHHHHHHHHhccCCCc-cChhhhcCCCCCCCCHHHHHHHHHHH
Q 041597 1 MAIKQLKAAKDFNGN-LPNLDDYFTAYRVHQLPEMK-STRYDILAITDPEVDNITVKKQYKRL 61 (149)
Q Consensus 1 ~A~~~~~~a~~~~~~-~~~i~~~~~~~~~~~~~~~~-~d~Y~iLgv~~~~as~~~Ik~ayr~l 61 (149)
||+..+-+|..+.|+ ...|.+...++...-..... .||=+||.+ .| +..+.+++-++|
T Consensus 152 ~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~-dP--s~~ear~~i~rl 211 (271)
T KOG4234|consen 152 SAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES-DP--SRREAREAIARL 211 (271)
T ss_pred HHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-Cc--chHHHHHHHHhc
Confidence 588899999999997 34444444444443222222 288889999 66 344667666665
No 85
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=51.23 E-value=5.1 Score=25.18 Aligned_cols=30 Identities=17% Similarity=0.420 Sum_probs=23.0
Q ss_pred cChhhhcCCCCCCCCHHHH-HHHHHHHHHHhCCCCC
Q 041597 36 STRYDILAITDPEVDNITV-KKQYKRLALMLHPEKN 70 (149)
Q Consensus 36 ~d~Y~iLgv~~~~as~~~I-k~ayr~l~~~~HPD~~ 70 (149)
.++++|||+ +++++ ......+....|||--
T Consensus 6 ~~~~~i~G~-----~~~~~~~~~~~~~~~~ihpdD~ 36 (91)
T PF08447_consen 6 DNFYEIFGY-----SPEEIGKPDFEEWLERIHPDDR 36 (91)
T ss_dssp THHHHHHTS------HHHHTCBEHHHHHHHB-TTTH
T ss_pred HHHHHHhCC-----CHHHhccCCHHHHHhhcCHHHH
Confidence 478999999 78888 6677888888999854
No 86
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=50.42 E-value=36 Score=21.35 Aligned_cols=42 Identities=7% Similarity=-0.118 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhh
Q 041597 55 KKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYR 100 (149)
Q Consensus 55 k~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~ 100 (149)
.+.++..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 13 ~~~~r~~~~~~~p~~~----~~eisk~~g~~Wk~ls~eeK~~y~~~ 54 (77)
T cd01389 13 RQDKHAQLKTENPGLT----NNEISRIIGRMWRSESPEVKAYYKEL 54 (77)
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 4566777788899864 46788899999999997766554444
No 87
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=48.39 E-value=56 Score=19.30 Aligned_cols=40 Identities=13% Similarity=0.097 Sum_probs=28.6
Q ss_pred HHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhh
Q 041597 58 YKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRR 101 (149)
Q Consensus 58 yr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~ 101 (149)
.|...+.-||+.. ..+..+.|.+.|..|++.++....+..
T Consensus 15 ~r~~~~~~~p~~~----~~~i~~~~~~~W~~ls~~eK~~y~~~a 54 (66)
T cd01390 15 QRPKLKKENPDAS----VTEVTKILGEKWKELSEEEKKKYEEKA 54 (66)
T ss_pred HHHHHHHHCcCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455566688743 468889999999999977766655543
No 88
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=46.75 E-value=26 Score=18.24 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHHHhCC
Q 041597 50 DNITVKKQYKRLALMLHP 67 (149)
Q Consensus 50 s~~~Ik~ayr~l~~~~HP 67 (149)
..++.+.+-|+.++.||-
T Consensus 9 ~~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 9 NKEDKRAQLRQAALEYHE 26 (28)
T ss_pred chHHHHHHHHHHHHHhcc
Confidence 347788999999999994
No 89
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=45.95 E-value=21 Score=19.73 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=16.6
Q ss_pred hHHHHHHHHhhCCCCccHHHHH
Q 041597 2 AIKQLKAAKDFNGNLPNLDDYF 23 (149)
Q Consensus 2 A~~~~~~a~~~~~~~~~i~~~~ 23 (149)
|++.++++.+.+|+...+...+
T Consensus 20 A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 20 AERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHCcCCHHHHHHh
Confidence 6788899999999876655443
No 90
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=45.75 E-value=67 Score=28.17 Aligned_cols=42 Identities=24% Similarity=0.288 Sum_probs=26.8
Q ss_pred HHHHHHHhccCCCccChhhhcC---CC-------CCCCCHHHHHHHHHHHHHH
Q 041597 22 YFTAYRVHQLPEMKSTRYDILA---IT-------DPEVDNITVKKQYKRLALM 64 (149)
Q Consensus 22 ~~~~~~~~~~~~~~~d~Y~iLg---v~-------~~~as~~~Ik~ayr~l~~~ 64 (149)
+..+++++.-. ..+--|+++| |. .+..+++|||+-|.++.+.
T Consensus 58 i~~AyEVLsDp-~kRaIYD~~G~qGL~t~gwEl~~r~~tpeEIreE~Erl~r~ 109 (546)
T KOG0718|consen 58 IQRAYEVLSDP-QKRAIYDNYGEQGLKTEGWELGFRGKTPEEIREEYERLQRE 109 (546)
T ss_pred HHHHHHHhcCh-HHHHHHHHhhhccccccCceeecCCCCHHHHHHHHHHHHHH
Confidence 33455555433 3444555555 31 5788999999999888754
No 91
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=45.61 E-value=22 Score=18.15 Aligned_cols=14 Identities=14% Similarity=0.320 Sum_probs=12.5
Q ss_pred hHHHHHHHHhhCCC
Q 041597 2 AIKQLKAAKDFNGN 15 (149)
Q Consensus 2 A~~~~~~a~~~~~~ 15 (149)
|+..+++|.+++|+
T Consensus 20 A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 20 ALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHCcC
Confidence 78899999999986
No 92
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=43.05 E-value=27 Score=17.51 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=12.3
Q ss_pred hHHHHHHHHhhCCC
Q 041597 2 AIKQLKAAKDFNGN 15 (149)
Q Consensus 2 A~~~~~~a~~~~~~ 15 (149)
|++.++++.+++|+
T Consensus 20 A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 20 AIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHCcC
Confidence 78899999999986
No 93
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=38.40 E-value=81 Score=18.82 Aligned_cols=41 Identities=15% Similarity=0.062 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhh
Q 041597 56 KQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYR 100 (149)
Q Consensus 56 ~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~ 100 (149)
+.++...+.-||+.. ..+..+.|.+.|.-|++.++....+.
T Consensus 13 ~~~~~~~k~~~p~~~----~~~i~~~~~~~W~~l~~~eK~~y~~~ 53 (69)
T PF00505_consen 13 KEKRAKLKEENPDLS----NKEISKILAQMWKNLSEEEKAPYKEE 53 (69)
T ss_dssp HHHHHHHHHHSTTST----HHHHHHHHHHHHHCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccc----cccchhhHHHHHhcCCHHHHHHHHHH
Confidence 445555666788876 46788889999999986665554443
No 94
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=38.35 E-value=48 Score=19.78 Aligned_cols=30 Identities=7% Similarity=-0.102 Sum_probs=24.9
Q ss_pred hHHHHHHHHhhCCCCccHHHHHHHHHHhcc
Q 041597 2 AIKQLKAAKDFNGNLPNLDDYFTAYRVHQL 31 (149)
Q Consensus 2 A~~~~~~a~~~~~~~~~i~~~~~~~~~~~~ 31 (149)
|.++...+.++.|+......+...++..+.
T Consensus 20 A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~ 49 (53)
T PF14853_consen 20 ARRYCDALLEIEPDNRQAQSLKELIEDKIQ 49 (53)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Confidence 788999999999999999988888876654
No 95
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=38.08 E-value=1.9e+02 Score=22.44 Aligned_cols=80 Identities=10% Similarity=0.180 Sum_probs=41.5
Q ss_pred hHHHHHHHHhhCCCCccHHHHHHHHHHhccCCCccC-hhhhcCCCCCCCCHHHHHHHHHHH--HHHhCCCCCCChhHHHH
Q 041597 2 AIKQLKAAKDFNGNLPNLDDYFTAYRVHQLPEMKST-RYDILAITDPEVDNITVKKQYKRL--ALMLHPEKNPSIAAEGA 78 (149)
Q Consensus 2 A~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~d-~Y~iLgv~~~~as~~~Ik~ayr~l--~~~~HPD~~~~~~a~~~ 78 (149)
|+..+++..+++|+.+.+....-..-..... ...+ +-..+.++...-++...++|+..+ ...-+|+..-...+..+
T Consensus 88 A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~-~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~r 166 (243)
T PRK10866 88 AQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA-LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKR 166 (243)
T ss_pred HHHHHHHHHHhCcCCCchHHHHHHHHHhhhh-cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHH
Confidence 6788888899999888887655444322100 1111 111233412233556667554432 24457876555445554
Q ss_pred HHHH
Q 041597 79 FQIV 82 (149)
Q Consensus 79 f~~i 82 (149)
...|
T Consensus 167 l~~l 170 (243)
T PRK10866 167 LVFL 170 (243)
T ss_pred HHHH
Confidence 4444
No 96
>smart00398 HMG high mobility group.
Probab=33.76 E-value=91 Score=18.40 Aligned_cols=41 Identities=10% Similarity=0.033 Sum_probs=28.2
Q ss_pred HHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhh
Q 041597 57 QYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRR 101 (149)
Q Consensus 57 ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~ 101 (149)
..+...+.-||+.. ..+..+.|.+.|..|++.++....+..
T Consensus 15 ~~r~~~~~~~~~~~----~~~i~~~~~~~W~~l~~~ek~~y~~~a 55 (70)
T smart00398 15 ENRAKIKAENPDLS----NAEISKKLGERWKLLSEEEKAPYEEKA 55 (70)
T ss_pred HHHHHHHHHCcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555556688754 457788899999999976666555543
No 97
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=32.78 E-value=48 Score=28.66 Aligned_cols=69 Identities=17% Similarity=0.141 Sum_probs=49.5
Q ss_pred ChHHHHHHHHhhCCCCccHHHHHHHHHHhccCCCcc--------------ChhhhcCCCCCCCCHHHHHHHHHHHHHHhC
Q 041597 1 MAIKQLKAAKDFNGNLPNLDDYFTAYRVHQLPEMKS--------------TRYDILAITDPEVDNITVKKQYKRLALMLH 66 (149)
Q Consensus 1 ~A~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~--------------d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~H 66 (149)
||+..++++.+++|+......+...+.++......- -|=+-|+| +|+ +.+..-+.|-.+++..+
T Consensus 221 ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i-dP~-n~~~naklY~nra~v~~ 298 (486)
T KOG0550|consen 221 KAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI-DPS-NKKTNAKLYGNRALVNI 298 (486)
T ss_pred HHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC-Ccc-ccchhHHHHHHhHhhhc
Confidence 689999999999999887877777777664432111 34456888 665 55566778888888888
Q ss_pred CCCCC
Q 041597 67 PEKNP 71 (149)
Q Consensus 67 PD~~~ 71 (149)
+-...
T Consensus 299 rLgrl 303 (486)
T KOG0550|consen 299 RLGRL 303 (486)
T ss_pred ccCCc
Confidence 76553
No 98
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=30.62 E-value=1.1e+02 Score=17.39 Aligned_cols=46 Identities=11% Similarity=0.149 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhCCCCCCChhHHHHHHHH--HHHHHhc--CChhhHHHHhh
Q 041597 53 TVKKQYKRLALMLHPEKNPSIAAEGAFQIV--QSAGDVL--TNPEKREAYYR 100 (149)
Q Consensus 53 ~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i--~~Ay~~L--~d~~~R~~YD~ 100 (149)
+.+.+|++|...+. ..+...-.+....| ...|..| +...++..|+.
T Consensus 1 ~a~~~F~~lL~e~~--i~~~s~W~~~~~~l~~dpry~~i~~~~~~R~~lF~e 50 (51)
T PF01846_consen 1 KAREAFKELLKEHK--ITPYSSWEEVKPKLSKDPRYKAIGDSESERESLFEE 50 (51)
T ss_dssp HHHHHHHHHHHHTT--S-TTSSHHHHHHHHTTSCHHHHSTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCC--CCCCCcHHHHHHHHccCHHHHHhcCCHHHHHHHHHh
Confidence 46788998877765 44443322222222 2255656 44455555543
No 99
>PHA02053 hypothetical protein
Probab=30.29 E-value=1.8e+02 Score=19.94 Aligned_cols=46 Identities=9% Similarity=0.091 Sum_probs=31.7
Q ss_pred CCCC-CHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHH-HHHHHhcCC
Q 041597 46 DPEV-DNITVKKQYKRLALMLHPEKNPSIAAEGAFQIV-QSAGDVLTN 91 (149)
Q Consensus 46 ~~~a-s~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i-~~Ay~~L~d 91 (149)
+-++ +..+..+|||+.-..|.-+...-+...-....| ...|+||+.
T Consensus 64 P~D~~ta~~F~kayR~~~VIysr~lGS~DsVmWnLMHlDk~iw~vl~e 111 (115)
T PHA02053 64 PIDANTATEFQKAYRSWGVIYSRSLGSYDSVMWNLMHLDKLIWEVLSE 111 (115)
T ss_pred CCCCCCHHHHHHHHHhcCeeeecCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 5566 889999999999888888877665533333333 445677764
No 100
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=29.16 E-value=1.3e+02 Score=24.49 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=17.6
Q ss_pred ChhhhcCCCCCCCCHHHHHHHHHHHHHHh
Q 041597 37 TRYDILAITDPEVDNITVKKQYKRLALML 65 (149)
Q Consensus 37 d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~ 65 (149)
+-.++-|| +..+|+++|+.|...+
T Consensus 281 eIa~v~~V-----s~~tI~~~ykel~~~l 304 (310)
T PRK00423 281 EVAEVAGV-----TEVTVRNRYKELAEKL 304 (310)
T ss_pred HHHHHcCC-----CHHHHHHHHHHHHHHh
Confidence 44445555 8889999999998754
No 101
>cd07356 HN_L-whirlin_R1_like First harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains. This subgroup contains the first of two harmonin_N_like domains of the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. This first harmonin_N_like domain precedes PDZ1, and is a putative protein-binding module based on its sequence similarity to the N-terminal domain of harmonin. This first harmonin_N_like domain has been assayed for interaction with the cytoplasmic domain of cadherin 23 (a component of the Usher network and an interacting partner of the harmonin N-domain), however no interaction could be detected. Th
Probab=29.13 E-value=1.7e+02 Score=19.08 Aligned_cols=39 Identities=28% Similarity=0.417 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhh
Q 041597 55 KKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYR 100 (149)
Q Consensus 55 k~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~ 100 (149)
++.+......||-++| .+..+..---+|-+|+||..+--
T Consensus 21 r~~f~h~Ln~Y~~~Rn-------V~~Lv~sL~~vLd~P~Krqllpl 59 (78)
T cd07356 21 REEFIHCLNDYHAKRN-------VYDLVQSLKVVLDTPEKRQLLPL 59 (78)
T ss_pred HHHHHHHHHHHHhccc-------HHHHHHHHHHHhCCHhHhHHHHH
Confidence 3344455556777766 45566667778889999987753
No 102
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=28.53 E-value=1.1e+02 Score=19.78 Aligned_cols=55 Identities=18% Similarity=0.120 Sum_probs=32.5
Q ss_pred ChHHHHHHHHhhCCCCccHHHHHHHHHHhccCCCccChhhhcCCCCCCCCHHHHHHHHHHHHHHh
Q 041597 1 MAIKQLKAAKDFNGNLPNLDDYFTAYRVHQLPEMKSTRYDILAITDPEVDNITVKKQYKRLALML 65 (149)
Q Consensus 1 ~A~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~ 65 (149)
||..++.+|...+.. ....+.++.+...+.. ++.+ -...+....+..|+..+..|
T Consensus 5 ~A~~~a~~AVe~D~~-gr~~eAi~~Y~~aIe~--------L~q~-~~~~pD~~~k~~yr~ki~eY 59 (75)
T cd02682 5 MARKYAINAVKAEKE-GNAEDAITNYKKAIEV--------LSQI-VKNYPDSPTRLIYEQMINEY 59 (75)
T ss_pred HHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHH--------HHHH-HHhCCChHHHHHHHHHHHHH
Confidence 588899999999976 4466665555554431 2222 22333444466677766654
No 103
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=27.42 E-value=2e+02 Score=19.71 Aligned_cols=29 Identities=14% Similarity=0.036 Sum_probs=19.5
Q ss_pred hHHHHHHHHhhCCCCccHHHHHHHHHHhc
Q 041597 2 AIKQLKAAKDFNGNLPNLDDYFTAYRVHQ 30 (149)
Q Consensus 2 A~~~~~~a~~~~~~~~~i~~~~~~~~~~~ 30 (149)
|++.++++..++|..+.+-..+..+-...
T Consensus 81 a~~~~~~~l~~dP~~E~~~~~lm~~~~~~ 109 (146)
T PF03704_consen 81 ALRLLQRALALDPYDEEAYRLLMRALAAQ 109 (146)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHC
Confidence 56778888888888777766665554433
No 104
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=27.15 E-value=1.3e+02 Score=28.26 Aligned_cols=57 Identities=21% Similarity=0.248 Sum_probs=34.7
Q ss_pred cChhhhcCCCCCCCCHHHHHHHHHHHHHHh--CCCCCCChh------HHHHHHHHHHHHHhcCChhhH
Q 041597 36 STRYDILAITDPEVDNITVKKQYKRLALML--HPEKNPSIA------AEGAFQIVQSAGDVLTNPEKR 95 (149)
Q Consensus 36 ~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~--HPD~~~~~~------a~~~f~~i~~Ay~~L~d~~~R 95 (149)
+|.|.||.| +.++-.|.+.-..+..+. .||+.+-.. ....|+.|+..|+.++-....
T Consensus 390 kdLY~iLEv---eF~PL~l~k~lq~ll~~ls~~~~~~QYI~sLq~v~~~RllqQvSqiY~sIs~~~l~ 454 (988)
T KOG2072|consen 390 KDLYNILEV---EFHPLKLCKKLQPLLDKLSESPDKSQYIPSLQDVIILRLLQQVSQIYESISFERLY 454 (988)
T ss_pred HHHHHHHHh---cCCHHHHHHHHHHHHHHHHcCCCccccchhHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 366777766 445555655555555443 355533222 567899999999988754433
No 105
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=25.78 E-value=1.3e+02 Score=17.49 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=19.7
Q ss_pred hHHHHHHHHhhCCCCccHHHHHHHHHH
Q 041597 2 AIKQLKAAKDFNGNLPNLDDYFTAYRV 28 (149)
Q Consensus 2 A~~~~~~a~~~~~~~~~i~~~~~~~~~ 28 (149)
|++.++++...+|+...+.-.+..|..
T Consensus 10 A~~~~~~~l~~~p~~~~~~~~la~~~~ 36 (68)
T PF14559_consen 10 AIELLEKALQRNPDNPEARLLLAQCYL 36 (68)
T ss_dssp HHHHHHHHHHHTTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 788999999999986666555444433
No 106
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=24.67 E-value=1.3e+02 Score=17.72 Aligned_cols=24 Identities=17% Similarity=0.440 Sum_probs=19.3
Q ss_pred hhhcCCCCCCCCHHHHHHHHHHHHH
Q 041597 39 YDILAITDPEVDNITVKKQYKRLAL 63 (149)
Q Consensus 39 Y~iLgv~~~~as~~~Ik~ayr~l~~ 63 (149)
+.+=|+ .+..+++|.|+.-|+-++
T Consensus 2 ~~~egl-~pk~DPeE~k~kmR~dvi 25 (51)
T PF15178_consen 2 FRIEGL-GPKMDPEEMKRKMREDVI 25 (51)
T ss_pred cccccC-CCCCCHHHHHHHHHHHHH
Confidence 456688 999999999998887544
No 107
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=24.55 E-value=1.8e+02 Score=23.59 Aligned_cols=26 Identities=12% Similarity=0.146 Sum_probs=20.7
Q ss_pred ChhhhcCCCCCCCCHHHHHHHHHHHHHHhCC
Q 041597 37 TRYDILAITDPEVDNITVKKQYKRLALMLHP 67 (149)
Q Consensus 37 d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HP 67 (149)
+..+++++ +..+|.++|+.+.+.+.=
T Consensus 187 eI~~~~~v-----~~k~i~~~~~~l~k~L~~ 212 (310)
T PRK00423 187 EIAEVSRV-----SRKEIGRCYRFLLRELNL 212 (310)
T ss_pred HHHHHhCC-----CHHHHHHHHHHHHHHhCC
Confidence 55555666 899999999999998753
No 108
>PTZ00199 high mobility group protein; Provisional
Probab=24.18 E-value=2.2e+02 Score=18.72 Aligned_cols=41 Identities=17% Similarity=0.115 Sum_probs=28.0
Q ss_pred HHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhh
Q 041597 58 YKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYR 100 (149)
Q Consensus 58 yr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~ 100 (149)
.|..++.-||+.... ..+..+.|.+-|..|++.++...++.
T Consensus 37 ~R~~i~~~~P~~~~~--~~evsk~ige~Wk~ls~eeK~~y~~~ 77 (94)
T PTZ00199 37 KRAEIIAENPELAKD--VAAVGKMVGEAWNKLSEEEKAPYEKK 77 (94)
T ss_pred HHHHHHHHCcCCccc--HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344455668887532 35677889999999997766655554
No 109
>COG2879 Uncharacterized small protein [Function unknown]
Probab=23.46 E-value=2e+02 Score=18.06 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=17.5
Q ss_pred HHHHHHHHHhCCCCCCChhHHHHHHHHH
Q 041597 56 KQYKRLALMLHPEKNPSIAAEGAFQIVQ 83 (149)
Q Consensus 56 ~ayr~l~~~~HPD~~~~~~a~~~f~~i~ 83 (149)
..|-.-.++.|||+.+-. -.|-|..-.
T Consensus 26 dnYVehmr~~hPd~p~mT-~~EFfrec~ 52 (65)
T COG2879 26 DNYVEHMRKKHPDKPPMT-YEEFFRECQ 52 (65)
T ss_pred HHHHHHHHHhCcCCCccc-HHHHHHHHH
Confidence 357777889999998753 344444333
No 110
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.20 E-value=2.3e+02 Score=26.12 Aligned_cols=72 Identities=18% Similarity=0.170 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhccCC---CccChhhhcCCC--------CCCCCHHHHHHHHHH---HHHHhCCCCCCChh----HHHHHH
Q 041597 19 LDDYFTAYRVHQLPE---MKSTRYDILAIT--------DPEVDNITVKKQYKR---LALMLHPEKNPSIA----AEGAFQ 80 (149)
Q Consensus 19 i~~~~~~~~~~~~~~---~~~d~Y~iLgv~--------~~~as~~~Ik~ayr~---l~~~~HPD~~~~~~----a~~~f~ 80 (149)
|-+++.....++..+ -...+|+||-.+ =++.+...|...|+- ..++++||.+...+ ....|.
T Consensus 604 V~Qii~lMd~LLkkenlDLkLtpYkVLatg~~eG~vefI~s~~la~Ils~~~~I~~ylke~~p~e~ap~gi~~~v~dnfV 683 (843)
T KOG0906|consen 604 VLQIIRLMDRLLKKENLDLKLTPYKVLATGPKEGFVEFIPSKPLARILSEYHSILMYLKEDRPDENAPFGISPEVMDNFV 683 (843)
T ss_pred HHHHHHHHHHHhccccccccceeeEEeccCCCcccEEeecCCcHHHHHHHHHHHHHHHHhhCCCcCCCCCCChhHHHHHH
Confidence 345555555555533 234899999873 125688999998876 55788999975443 567777
Q ss_pred HHHHHHHhcC
Q 041597 81 IVQSAGDVLT 90 (149)
Q Consensus 81 ~i~~Ay~~L~ 90 (149)
.-...|.|+.
T Consensus 684 kScaGYsVit 693 (843)
T KOG0906|consen 684 KSCAGYSVIT 693 (843)
T ss_pred Hhhccceeee
Confidence 7777787753
No 111
>PRK00810 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=23.02 E-value=1.1e+02 Score=21.32 Aligned_cols=65 Identities=9% Similarity=0.104 Sum_probs=32.8
Q ss_pred cChhhhcCCCCC-----CCCHHHHHHHHHHHHHHhCCCCCCChh-HHHHHHHHHHHHHh--cCChhhHHHHhhh
Q 041597 36 STRYDILAITDP-----EVDNITVKKQYKRLALMLHPEKNPSIA-AEGAFQIVQSAGDV--LTNPEKREAYYRR 101 (149)
Q Consensus 36 ~d~Y~iLgv~~~-----~as~~~Ik~ayr~l~~~~HPD~~~~~~-a~~~f~~i~~Ay~~--L~d~~~R~~YD~~ 101 (149)
-+|++.||| +- +...-.|=|.|......-.....+... ....=..+.+||+. -|+|..-+.+-=+
T Consensus 19 Edff~ff~V-~YDp~vvnV~RLHILKrF~~yL~~~~~~~~~e~~~~~~yr~aL~~AY~dF~~Stp~~ekvFKVf 91 (113)
T PRK00810 19 EEFFQLLGV-PYDPKVVNVARLHILKRMGQYLAQEDFAGLPEAEARARCRAVLERAYADFVASSPLDQRVFKVL 91 (113)
T ss_pred HHHHHHhCC-CCCHHHHHHhHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHccCCHhHHHHHHHH
Confidence 378888888 44 224444666666655543311111111 23333456777773 4556555554433
No 112
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=22.09 E-value=2.4e+02 Score=18.63 Aligned_cols=48 Identities=10% Similarity=0.187 Sum_probs=31.2
Q ss_pred CCCCCCC-CHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHh
Q 041597 43 AITDPEV-DNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYY 99 (149)
Q Consensus 43 gv~~~~a-s~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD 99 (149)
|+ +++. ...+|-+.+..++..+++ . ..+.+..|.+.| +.||.-+..||
T Consensus 51 g~-~p~s~evq~l~~~~~~~~~~~~~---~---~~~~~~~l~~~y--~~~~~~~~~~~ 99 (118)
T PF07739_consen 51 GV-DPDSPEVQELAERWMELINQFTG---G---DPELLRGLAQMY--VEDPRFAAMYD 99 (118)
T ss_dssp T---TT-HHHHHHHHHHHHHHHHSS---------HHHHHHHHHHT--TSTHHHHHHHG
T ss_pred CC-CcCCHHHHHHHHHHHHHHHHHhC---C---CHHHHHHHHHHH--HcCHHHHhhcc
Confidence 45 4433 344566777777777777 1 246888888888 78899999888
No 113
>PF14164 YqzH: YqzH-like protein
Probab=22.02 E-value=1.1e+02 Score=19.15 Aligned_cols=19 Identities=11% Similarity=0.032 Sum_probs=8.7
Q ss_pred CHHHHHHHHHHHHHHhCCC
Q 041597 50 DNITVKKQYKRLALMLHPE 68 (149)
Q Consensus 50 s~~~Ik~ayr~l~~~~HPD 68 (149)
+..+-+.-.+++....|-+
T Consensus 27 s~~E~~~L~~~i~~~~~~~ 45 (64)
T PF14164_consen 27 SDEEWEELCKHIQERKNEE 45 (64)
T ss_pred CHHHHHHHHHHHHHHHhcC
Confidence 4444444444444444433
No 114
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=21.79 E-value=75 Score=21.26 Aligned_cols=14 Identities=21% Similarity=0.522 Sum_probs=10.7
Q ss_pred CCCHHHHHHHHHHH
Q 041597 48 EVDNITVKKQYKRL 61 (149)
Q Consensus 48 ~as~~~Ik~ayr~l 61 (149)
...+..|++|||+|
T Consensus 77 pl~P~hlreA~rrL 90 (90)
T PF04719_consen 77 PLQPDHLREAYRRL 90 (90)
T ss_dssp S--HHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhC
Confidence 44899999999997
No 115
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=21.61 E-value=1.5e+02 Score=17.35 Aligned_cols=25 Identities=16% Similarity=0.077 Sum_probs=16.9
Q ss_pred hHHHHHHHHhhCCCCccHHHHHHHH
Q 041597 2 AIKQLKAAKDFNGNLPNLDDYFTAY 26 (149)
Q Consensus 2 A~~~~~~a~~~~~~~~~i~~~~~~~ 26 (149)
|+..+.+|.+++|+...+-..+..+
T Consensus 22 A~~~~~~ai~~~p~~~~~~~~~g~~ 46 (69)
T PF13414_consen 22 AIEYFEKAIELDPNNAEAYYNLGLA 46 (69)
T ss_dssp HHHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 6788888888888855544444333
No 116
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=21.03 E-value=3.3e+02 Score=22.27 Aligned_cols=56 Identities=14% Similarity=0.171 Sum_probs=38.8
Q ss_pred ccChhhhcCCCCC-CCCHHHHHHHHHHHHHHh-------CCCCCCCh----hHHHHHHHHHHHHHhcCC
Q 041597 35 KSTRYDILAITDP-EVDNITVKKQYKRLALML-------HPEKNPSI----AAEGAFQIVQSAGDVLTN 91 (149)
Q Consensus 35 ~~d~Y~iLgv~~~-~as~~~Ik~ayr~l~~~~-------HPD~~~~~----~a~~~f~~i~~Ay~~L~d 91 (149)
...+++-||+ .. ..+.+|+++-.++++.+. ++|.+... .-.+.++.+.++|+.|.+
T Consensus 81 R~pl~~~l~l-~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~ 148 (318)
T PF12725_consen 81 RPPLSERLGL-ETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAE 148 (318)
T ss_pred CcCHHHHcCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 3477889999 66 889999888766665443 33332111 147889999999998864
Done!