Query 041597
Match_columns 149
No_of_seqs 224 out of 1407
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 14:53:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041597.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041597hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hdj_A Human HSP40, HDJ-1; mol 99.9 1.3E-24 4.3E-29 141.8 9.0 73 34-107 1-73 (77)
2 2ctr_A DNAJ homolog subfamily 99.9 1.9E-24 6.7E-29 144.4 8.5 75 33-108 4-78 (88)
3 2ctp_A DNAJ homolog subfamily 99.9 9.6E-24 3.3E-28 137.9 8.3 71 34-105 5-75 (78)
4 2dmx_A DNAJ homolog subfamily 99.9 1.1E-23 3.8E-28 141.6 8.8 75 34-109 7-83 (92)
5 2dn9_A DNAJ homolog subfamily 99.9 1.8E-23 6.1E-28 136.8 8.4 72 33-105 4-76 (79)
6 2o37_A Protein SIS1; HSP40, J- 99.9 1.1E-23 3.7E-28 141.9 7.1 72 34-108 6-77 (92)
7 2cug_A Mkiaa0962 protein; DNAJ 99.9 2.3E-23 7.8E-28 139.2 8.4 71 34-105 15-85 (88)
8 2ej7_A HCG3 gene; HCG3 protein 99.9 3.3E-23 1.1E-27 136.5 8.3 72 34-106 7-80 (82)
9 2lgw_A DNAJ homolog subfamily 99.9 1.8E-23 6.2E-28 142.7 7.3 73 36-109 2-76 (99)
10 2yua_A Williams-beuren syndrom 99.9 1.9E-23 6.4E-28 142.5 7.3 70 33-103 14-84 (99)
11 1bq0_A DNAJ, HSP40; chaperone, 99.9 2E-23 6.8E-28 143.2 5.4 74 34-108 1-75 (103)
12 2och_A Hypothetical protein DN 99.9 8.6E-23 2.9E-27 131.8 8.0 66 35-103 7-72 (73)
13 2ctq_A DNAJ homolog subfamily 99.9 1.3E-22 4.5E-27 141.1 7.6 73 34-107 18-91 (112)
14 1wjz_A 1700030A21RIK protein; 99.9 1.3E-22 4.4E-27 136.7 6.4 69 35-104 15-90 (94)
15 2ctw_A DNAJ homolog subfamily 99.9 5.5E-22 1.9E-26 137.4 8.4 72 33-105 14-86 (109)
16 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 1.4E-21 4.9E-26 135.1 6.0 69 35-104 14-87 (109)
17 3apq_A DNAJ homolog subfamily 99.8 1.4E-20 4.8E-25 142.0 8.8 73 36-109 2-75 (210)
18 2l6l_A DNAJ homolog subfamily 99.8 1.3E-20 4.6E-25 137.6 7.5 70 33-103 7-83 (155)
19 2ys8_A RAB-related GTP-binding 99.8 6.7E-21 2.3E-25 127.7 5.2 61 35-96 26-86 (90)
20 3lz8_A Putative chaperone DNAJ 99.8 1.2E-20 4E-25 153.0 0.0 69 35-104 27-95 (329)
21 3ag7_A Putative uncharacterize 99.8 3.8E-20 1.3E-24 127.7 2.4 84 6-93 12-104 (106)
22 3hho_A CO-chaperone protein HS 99.8 1.8E-19 6.3E-24 134.1 6.3 68 35-103 3-78 (174)
23 1gh6_A Large T antigen; tumor 99.8 1.8E-20 6.2E-25 130.8 0.4 64 35-102 7-72 (114)
24 1n4c_A Auxilin; four helix bun 99.8 4.9E-20 1.7E-24 137.9 2.4 80 16-98 99-182 (182)
25 2qwo_B Putative tyrosine-prote 99.8 7.9E-20 2.7E-24 122.9 2.9 74 15-91 14-91 (92)
26 1faf_A Large T antigen; J doma 99.8 2E-19 6.7E-24 117.9 4.5 60 35-98 10-71 (79)
27 1fpo_A HSC20, chaperone protei 99.8 2.7E-19 9.3E-24 132.9 5.4 66 37-103 2-75 (171)
28 3bvo_A CO-chaperone protein HS 99.8 2.5E-19 8.7E-24 136.7 5.3 72 31-103 38-117 (207)
29 2pf4_E Small T antigen; PP2A, 99.8 1.7E-20 5.7E-25 139.6 -1.3 66 34-103 9-76 (174)
30 1iur_A KIAA0730 protein; DNAJ 99.7 5.1E-19 1.7E-23 118.2 2.5 60 35-95 15-76 (88)
31 3uo3_A J-type CO-chaperone JAC 99.7 1.7E-18 5.7E-23 129.7 3.9 69 31-102 6-81 (181)
32 3apo_A DNAJ homolog subfamily 99.7 2.4E-18 8.3E-23 151.4 2.8 76 33-109 18-94 (780)
33 2guz_A Mitochondrial import in 99.7 7E-18 2.4E-22 108.3 3.3 56 36-95 14-70 (71)
34 2y4t_A DNAJ homolog subfamily 99.6 3.2E-15 1.1E-19 120.2 7.1 98 2-100 348-449 (450)
35 2guz_B Mitochondrial import in 99.1 1.2E-10 4E-15 73.2 4.9 51 37-91 5-58 (65)
36 2pzi_A Probable serine/threoni 96.4 0.0021 7.2E-08 55.5 3.9 51 30-88 623-675 (681)
37 1hry_A Human SRY; DNA, DNA-bin 58.7 22 0.00077 21.2 5.0 42 55-100 16-57 (76)
38 4a3n_A Transcription factor SO 56.6 25 0.00085 20.6 4.8 42 55-100 14-55 (71)
39 1wz6_A HMG-box transcription f 56.6 25 0.00084 21.4 5.0 42 55-100 19-60 (82)
40 1i11_A Transcription factor SO 53.0 35 0.0012 20.7 5.2 42 56-101 17-58 (81)
41 2d7l_A WD repeat and HMG-box D 51.6 28 0.00094 21.6 4.6 45 55-102 17-61 (81)
42 2crj_A SWI/SNF-related matrix- 51.0 42 0.0014 20.9 5.8 42 55-100 19-60 (92)
43 3f27_D Transcription factor SO 50.7 39 0.0013 20.5 5.2 42 55-100 18-59 (83)
44 2pk2_A Cyclin-T1, protein TAT; 50.4 23 0.00077 28.2 4.9 27 36-65 219-245 (358)
45 2eqz_A High mobility group pro 48.6 44 0.0015 20.5 5.2 42 56-99 28-69 (86)
46 1wgf_A Upstream binding factor 47.5 36 0.0012 21.2 4.7 44 55-102 32-75 (90)
47 2cs1_A PMS1 protein homolog 1; 46.5 42 0.0014 20.9 4.9 41 56-100 20-60 (92)
48 1ckt_A High mobility group 1 p 44.7 45 0.0015 19.4 5.7 42 57-100 15-56 (71)
49 2cqn_A Formin-binding protein 43.6 56 0.0019 20.1 5.3 53 49-102 6-62 (77)
50 2e6o_A HMG box-containing prot 43.5 46 0.0016 20.5 4.7 42 55-100 29-70 (87)
51 3u2b_C Transcription factor SO 42.7 52 0.0018 19.6 4.8 42 55-100 14-55 (79)
52 1gt0_D Transcription factor SO 42.5 44 0.0015 20.1 4.4 41 56-100 15-55 (80)
53 1hme_A High mobility group pro 42.0 53 0.0018 19.5 5.5 41 56-100 19-59 (77)
54 1k99_A Upstream binding factor 41.5 46 0.0016 21.2 4.6 42 56-101 23-64 (99)
55 4euw_A Transcription factor SO 40.8 53 0.0018 21.1 4.9 42 55-100 41-82 (106)
56 1j46_A SRY, sex-determining re 40.8 56 0.0019 19.9 4.8 42 55-100 16-57 (85)
57 2lef_A LEF-1 HMG, protein (lym 40.4 59 0.002 19.8 4.9 41 56-100 15-55 (86)
58 2co9_A Thymus high mobility gr 40.2 56 0.0019 20.8 4.9 40 56-99 30-69 (102)
59 3nm9_A HMG-D, high mobility gr 39.6 58 0.002 19.2 4.8 38 55-99 15-52 (73)
60 2b7e_A PRE-mRNA processing pro 37.3 64 0.0022 19.0 5.1 50 52-103 3-57 (59)
61 1r5q_A KAI A, circadian oscill 36.9 70 0.0024 20.9 4.7 34 51-86 11-44 (102)
62 1uzc_A Hypothetical protein FL 36.3 72 0.0025 19.3 5.4 55 47-103 10-67 (71)
63 1qqr_A Streptokinase domain B; 35.2 17 0.00059 25.3 1.7 31 38-69 34-64 (138)
64 1v2z_A Circadian clock protein 32.3 71 0.0024 21.2 4.2 29 51-79 18-46 (111)
65 2yrq_A High mobility group pro 32.0 1E+02 0.0036 21.3 5.6 44 55-100 27-70 (173)
66 1c9b_A General transcription f 31.8 43 0.0015 23.9 3.6 12 50-61 172-183 (207)
67 1ais_B TFB TFIIB, protein (tra 31.7 55 0.0019 23.2 4.1 25 37-66 170-194 (200)
68 3tq6_A Transcription factor A, 30.8 92 0.0032 22.7 5.3 41 56-100 22-62 (214)
69 3tmm_A Transcription factor A, 29.9 93 0.0032 23.1 5.2 42 55-100 53-94 (238)
70 1ais_B TFB TFIIB, protein (tra 28.6 76 0.0026 22.4 4.4 62 2-68 33-100 (200)
71 1ug2_A 2610100B20RIK gene prod 28.5 37 0.0013 22.0 2.3 22 48-69 67-88 (95)
72 2gzk_A Sex-determining region 26.3 1.3E+02 0.0046 20.3 5.2 39 58-100 19-57 (159)
73 4bbr_M Transcription initiatio 26.1 69 0.0024 25.3 4.1 60 2-66 150-215 (345)
74 3sz7_A HSC70 cochaperone (SGT) 25.1 61 0.0021 21.1 3.2 18 2-19 30-47 (164)
75 1aab_A High mobility group pro 24.6 52 0.0018 19.9 2.5 43 56-100 20-62 (83)
76 1cf7_A Protein (transcription 22.8 43 0.0015 20.6 1.8 46 47-102 8-53 (76)
77 2l6j_A TPR repeat-containing p 22.6 1.2E+02 0.0042 17.5 5.6 18 2-19 23-40 (111)
78 2yrq_A High mobility group pro 21.5 2E+02 0.007 19.7 5.7 41 55-99 113-153 (173)
79 2kc7_A BFR218_protein; tetratr 21.3 1.3E+02 0.0044 17.3 4.5 17 2-18 19-35 (99)
80 3mkr_A Coatomer subunit epsilo 20.9 2.5E+02 0.0085 20.5 6.5 30 57-86 256-288 (291)
No 1
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.91 E-value=1.3e-24 Score=141.75 Aligned_cols=73 Identities=34% Similarity=0.501 Sum_probs=68.4
Q ss_pred CccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhccccCC
Q 041597 34 MKSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSKK 107 (149)
Q Consensus 34 ~~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~ 107 (149)
|+.|||+|||| +++++.++||++|++|++++|||+++...+.+.|+.|++||++|+||.+|..||+++.++..
T Consensus 1 m~~~~y~iLgv-~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 73 (77)
T 1hdj_A 1 MGKDYYQTLGL-ARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLK 73 (77)
T ss_dssp CCCCSHHHHTC-CTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCC
T ss_pred CCCCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHcccccc
Confidence 46799999999 99999999999999999999999998877899999999999999999999999999876654
No 2
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=1.9e-24 Score=144.38 Aligned_cols=75 Identities=28% Similarity=0.464 Sum_probs=69.1
Q ss_pred CCccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhccccCCC
Q 041597 33 EMKSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSKKS 108 (149)
Q Consensus 33 ~~~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~ 108 (149)
....|||+|||| +++++.++||++||+|++++|||+++...+.+.|+.|++||++|+||.+|..||.++..+...
T Consensus 4 ~~~~~~y~iLgv-~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 78 (88)
T 2ctr_A 4 GSSGSYYDILGV-PKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTS 78 (88)
T ss_dssp CCCCSHHHHHTC-CTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHTC
T ss_pred CCCCCHHHHcCc-CCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccc
Confidence 345699999999 999999999999999999999999998778999999999999999999999999999766553
No 3
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=9.6e-24 Score=137.87 Aligned_cols=71 Identities=37% Similarity=0.560 Sum_probs=66.6
Q ss_pred CccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhcccc
Q 041597 34 MKSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCS 105 (149)
Q Consensus 34 ~~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 105 (149)
...|||+|||| +++++.++||++|++|++++|||+++...+.+.|+.|++||++|+||.+|..||+++..+
T Consensus 5 ~~~~~y~iLgv-~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 75 (78)
T 2ctp_A 5 SSGDYYEILGV-SRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP 75 (78)
T ss_dssp CSCCHHHHHTC-CTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred CCCCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence 45699999999 999999999999999999999999988778999999999999999999999999988654
No 4
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=1.1e-23 Score=141.64 Aligned_cols=75 Identities=33% Similarity=0.538 Sum_probs=67.7
Q ss_pred CccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh--hHHHHHHHHHHHHHhcCChhhHHHHhhhccccCCCC
Q 041597 34 MKSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSI--AAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSKKSK 109 (149)
Q Consensus 34 ~~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~--~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~ 109 (149)
...|||+|||| +++++.++||++||+|++++|||+++.. .+++.|+.|++||++|+||.+|..||+.+.......
T Consensus 7 ~~~~~y~iLgv-~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~ 83 (92)
T 2dmx_A 7 GMANYYEVLGV-QASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRAG 83 (92)
T ss_dssp CCCCHHHHHTC-CTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSCCC
T ss_pred CCcCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccCC
Confidence 34699999999 9999999999999999999999998764 478999999999999999999999999987665543
No 5
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=1.8e-23 Score=136.83 Aligned_cols=72 Identities=26% Similarity=0.365 Sum_probs=65.6
Q ss_pred CCccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHhcCChhhHHHHhhhcccc
Q 041597 33 EMKSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPS-IAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCS 105 (149)
Q Consensus 33 ~~~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 105 (149)
....|||+|||| +++++.++||++||+|++++|||+++. ..+.+.|+.|++||++|+||.+|..||.++..+
T Consensus 4 ~~~~~~y~iLgv-~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 76 (79)
T 2dn9_A 4 GSSGDYYQILGV-PRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP 76 (79)
T ss_dssp SCCSCHHHHHTC-CTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred CCCCCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence 345699999999 999999999999999999999999875 448899999999999999999999999987543
No 6
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.1e-23 Score=141.88 Aligned_cols=72 Identities=29% Similarity=0.549 Sum_probs=65.5
Q ss_pred CccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhccccCCC
Q 041597 34 MKSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSKKS 108 (149)
Q Consensus 34 ~~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~ 108 (149)
+..|||+|||| +++++.++||++||+|++++|||+++.. .+.|+.|++||++|+||.+|..||+++..+...
T Consensus 6 ~~~~~y~iLgv-~~~as~~eIk~ayr~l~~~~HPDk~~~~--~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~ 77 (92)
T 2o37_A 6 KETKLYDLLGV-SPSANEQELKKGYRKAALKYHPDKPTGD--TEKFKEISEAFEILNDPQKREIYDQYGLEAARS 77 (92)
T ss_dssp SCCHHHHHHTC-CTTCCHHHHHHHHHHHHHHHCTTSTTCC--HHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHT
T ss_pred cCCCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCh--HHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhc
Confidence 45699999999 9999999999999999999999999764 679999999999999999999999999666543
No 7
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.89 E-value=2.3e-23 Score=139.17 Aligned_cols=71 Identities=31% Similarity=0.468 Sum_probs=66.4
Q ss_pred CccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhcccc
Q 041597 34 MKSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCS 105 (149)
Q Consensus 34 ~~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 105 (149)
...|||+|||| +++++.++||++||+|++++|||+++...+.+.|+.|++||++|+||.+|..||.++..+
T Consensus 15 ~~~d~y~iLgv-~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 85 (88)
T 2cug_A 15 LDFDPYRVLGV-SRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP 85 (88)
T ss_dssp SSSCHHHHHTC-CTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred CCCCHHHHcCc-CCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence 45699999999 999999999999999999999999988778999999999999999999999999988543
No 8
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=3.3e-23 Score=136.45 Aligned_cols=72 Identities=33% Similarity=0.525 Sum_probs=65.6
Q ss_pred CccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh--hHHHHHHHHHHHHHhcCChhhHHHHhhhccccC
Q 041597 34 MKSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSI--AAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSK 106 (149)
Q Consensus 34 ~~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~--~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 106 (149)
...|||+|||| +++++.++||++||+|++++|||+++.. .+.+.|+.|++||++|+||.+|..||+++..+.
T Consensus 7 ~~~~~y~iLgv-~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 80 (82)
T 2ej7_A 7 GMVDYYEVLDV-PRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS 80 (82)
T ss_dssp SSCCHHHHTTC-CTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred CCcCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence 45699999999 9999999999999999999999999865 378899999999999999999999999886543
No 9
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.89 E-value=1.8e-23 Score=142.69 Aligned_cols=73 Identities=36% Similarity=0.503 Sum_probs=64.1
Q ss_pred cChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChh--HHHHHHHHHHHHHhcCChhhHHHHhhhccccCCCC
Q 041597 36 STRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIA--AEGAFQIVQSAGDVLTNPEKREAYYRRSFCSKKSK 109 (149)
Q Consensus 36 ~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~--a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~ 109 (149)
.|||+|||| +++++.++||++||+|++++|||+++... +.+.|+.|++||++|+||.+|..||.++..+....
T Consensus 2 ~d~Y~iLgv-~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~~~ 76 (99)
T 2lgw_A 2 ASYYEILDV-PRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTGT 76 (99)
T ss_dssp CCHHHHSSS-CTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC-----
T ss_pred CCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccCC
Confidence 599999999 99999999999999999999999997643 78999999999999999999999999987666543
No 10
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=1.9e-23 Score=142.45 Aligned_cols=70 Identities=24% Similarity=0.414 Sum_probs=64.3
Q ss_pred CCccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHhcCChhhHHHHhhhcc
Q 041597 33 EMKSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPS-IAAEGAFQIVQSAGDVLTNPEKREAYYRRSF 103 (149)
Q Consensus 33 ~~~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 103 (149)
....|||+|||| +++++.++||++||+|+++||||+++. ..+.+.|+.|++||+||+||.+|..||+.+.
T Consensus 14 ~~~~~~Y~vLgv-~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 84 (99)
T 2yua_A 14 YSRTALYDLLGV-PSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLL 84 (99)
T ss_dssp SCSSHHHHHHTC-CTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCC
T ss_pred CCccCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 345699999999 999999999999999999999999974 4488999999999999999999999999763
No 11
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.88 E-value=2e-23 Score=143.25 Aligned_cols=74 Identities=32% Similarity=0.560 Sum_probs=67.8
Q ss_pred CccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHhcCChhhHHHHhhhccccCCC
Q 041597 34 MKSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPS-IAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSKKS 108 (149)
Q Consensus 34 ~~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~ 108 (149)
|..|||+|||| +++++.++||++||+|++++|||+++. ..+.+.|++|++||++|+||.+|..||+++..+...
T Consensus 1 ~~~~~y~iLgv-~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~ 75 (103)
T 1bq0_A 1 AKQDYYEILGV-SKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQ 75 (103)
T ss_dssp CCCCSTTTTSS-CSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCS
T ss_pred CCCCHHHHcCc-CCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhcc
Confidence 35799999999 999999999999999999999999985 448899999999999999999999999999776654
No 12
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.88 E-value=8.6e-23 Score=131.79 Aligned_cols=66 Identities=32% Similarity=0.629 Sum_probs=61.5
Q ss_pred ccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhcc
Q 041597 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRSF 103 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 103 (149)
..|||+|||| +++++.++||++|++|++++|||+++.. .+.|+.|++||++|+||.+|..||++|.
T Consensus 7 ~~~~y~iLgl-~~~a~~~eIk~ayr~l~~~~HPD~~~~~--~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 7 ETGYYDVLGV-KPDASDNELKKAYRKMALKFHPDKNPDG--AEQFKQISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp CCCHHHHHTC-CTTCCHHHHHHHHHHHHHHTCTTTCTTC--HHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred CCCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCcCH--HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 4699999999 9999999999999999999999999763 6899999999999999999999999875
No 13
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.3e-22 Score=141.15 Aligned_cols=73 Identities=29% Similarity=0.353 Sum_probs=66.7
Q ss_pred CccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHhcCChhhHHHHhhhccccCC
Q 041597 34 MKSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPS-IAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSKK 107 (149)
Q Consensus 34 ~~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~ 107 (149)
...|||+|||| +++++.++||++||+|++++|||+++. ..+.+.|+.|++||++|+||.+|..||+++..+..
T Consensus 18 ~~~d~Y~iLgv-~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~ 91 (112)
T 2ctq_A 18 DTEDYYTLLGC-DELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMS 91 (112)
T ss_dssp CCCCHHHHTTC-CTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCS
T ss_pred CCCCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccC
Confidence 45799999999 999999999999999999999999984 45899999999999999999999999999866543
No 14
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.87 E-value=1.3e-22 Score=136.71 Aligned_cols=69 Identities=28% Similarity=0.464 Sum_probs=63.3
Q ss_pred ccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-------hhHHHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 041597 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPS-------IAAEGAFQIVQSAGDVLTNPEKREAYYRRSFC 104 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~-------~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 104 (149)
..|||+|||| +++++.++||++||+|++++|||+++. ..+.+.|+.|++||+||+||.+|..||..+..
T Consensus 15 ~~~~y~iLgv-~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 90 (94)
T 1wjz_A 15 KKDWYSILGA-DPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG 90 (94)
T ss_dssp CSCHHHHTTC-CTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred CCChHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccC
Confidence 4699999999 999999999999999999999999874 23789999999999999999999999998743
No 15
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.86 E-value=5.5e-22 Score=137.41 Aligned_cols=72 Identities=31% Similarity=0.529 Sum_probs=65.7
Q ss_pred CCccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHhcCChhhHHHHhhhcccc
Q 041597 33 EMKSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPS-IAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCS 105 (149)
Q Consensus 33 ~~~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 105 (149)
....|||+|||| +++++.++||++||+|++++|||+++. ..+.+.|+.|++||++|+||.+|..||.++..+
T Consensus 14 ~~~~~~Y~vLgv-~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~ 86 (109)
T 2ctw_A 14 TSGESLYHVLGL-DKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLG 86 (109)
T ss_dssp SCSCCHHHHHTC-CTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHH
T ss_pred CCCCCHHHHcCc-CCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccc
Confidence 345699999999 999999999999999999999999975 448899999999999999999999999988544
No 16
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.84 E-value=1.4e-21 Score=135.14 Aligned_cols=69 Identities=26% Similarity=0.417 Sum_probs=64.0
Q ss_pred ccChhhhcCCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC----hhHHHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 041597 35 KSTRYDILAITDPEV-DNITVKKQYKRLALMLHPEKNPS----IAAEGAFQIVQSAGDVLTNPEKREAYYRRSFC 104 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~a-s~~~Ik~ayr~l~~~~HPD~~~~----~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 104 (149)
..|||+|||| ++++ +.++||++||+|++++|||+++. ..+.+.|+.|++||++|+||.+|..||+.+..
T Consensus 14 ~~~~y~iLgv-~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~ 87 (109)
T 2qsa_A 14 LENCYDVLEV-NREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH 87 (109)
T ss_dssp TSCHHHHTTC-CGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred CCCHHHHcCC-CCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence 4699999999 9999 99999999999999999999986 33789999999999999999999999998853
No 17
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.83 E-value=1.4e-20 Score=142.04 Aligned_cols=73 Identities=27% Similarity=0.493 Sum_probs=66.6
Q ss_pred cChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHhcCChhhHHHHhhhccccCCCC
Q 041597 36 STRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPS-IAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSKKSK 109 (149)
Q Consensus 36 ~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~ 109 (149)
.|||+|||| +++|+.++||+|||+|++++|||+++. ..+.+.|+.|++||++|+||.+|..||+++..+....
T Consensus 2 ~~~y~~l~~-~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~~ 75 (210)
T 3apq_A 2 QNFYSLLGV-SKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN 75 (210)
T ss_dssp CCHHHHHTC-CTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCTT
T ss_pred CCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccccc
Confidence 489999999 999999999999999999999999964 4488999999999999999999999999997765543
No 18
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.82 E-value=1.3e-20 Score=137.63 Aligned_cols=70 Identities=29% Similarity=0.456 Sum_probs=63.8
Q ss_pred CCccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChh-------HHHHHHHHHHHHHhcCChhhHHHHhhhcc
Q 041597 33 EMKSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIA-------AEGAFQIVQSAGDVLTNPEKREAYYRRSF 103 (149)
Q Consensus 33 ~~~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~-------a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 103 (149)
....|||+|||| +++++.++||++||+|++++|||+++... +.+.|+.|++||+||+||.+|+.||..+.
T Consensus 7 ~~~~~~y~iLgv-~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~ 83 (155)
T 2l6l_A 7 MPKKDWYSILGA-DPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC 83 (155)
T ss_dssp CCCSHHHHHHTC-CTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred CCCCChhHhcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 345699999999 99999999999999999999999987652 57899999999999999999999998774
No 19
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=6.7e-21 Score=127.73 Aligned_cols=61 Identities=31% Similarity=0.519 Sum_probs=57.9
Q ss_pred ccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHH
Q 041597 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKRE 96 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 96 (149)
..|||+|||| +++++.++||++||+|++++|||+++...+.+.|+.|++||++|+|+.+|.
T Consensus 26 ~~~~y~iLgv-~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 86 (90)
T 2ys8_A 26 SKDSWDMLGV-KPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSG 86 (90)
T ss_dssp CSSHHHHHTC-CTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred CCCHHHHcCc-CCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCccccc
Confidence 4799999999 999999999999999999999999988779999999999999999998875
No 20
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.78 E-value=1.2e-20 Score=152.99 Aligned_cols=69 Identities=30% Similarity=0.427 Sum_probs=0.0
Q ss_pred ccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 041597 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRSFC 104 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 104 (149)
..|||+|||| +++|+.++||+|||+|+++||||+++...++++|++|++||++|+||.+|..||+++..
T Consensus 27 ~~d~Y~vLgv-~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~ 95 (329)
T 3lz8_A 27 LKDYYAILGV-QPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQH 95 (329)
T ss_dssp ----------------------------------------------------------------------
T ss_pred ccCHHHHcCc-CCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhcc
Confidence 3699999999 99999999999999999999999998777899999999999999999999999998543
No 21
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.78 E-value=3.8e-20 Score=127.67 Aligned_cols=84 Identities=21% Similarity=0.319 Sum_probs=70.0
Q ss_pred HHHHHhhCCCCc-cHHHHHHHHHHhccCCCccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh--------hHH
Q 041597 6 LKAAKDFNGNLP-NLDDYFTAYRVHQLPEMKSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSI--------AAE 76 (149)
Q Consensus 6 ~~~a~~~~~~~~-~i~~~~~~~~~~~~~~~~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~--------~a~ 76 (149)
-.++..|.+..+ +|+.|+..+...+.. ..|||+|||+ +. |+.++||+|||++++++|||+++.. .++
T Consensus 12 ~~~i~~W~~~~~~~ir~lL~~l~~~l~~--~~d~Y~vl~~-~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~ 87 (106)
T 3ag7_A 12 DAKIRKWSSGKSGNIRSLLSTLQYILWS--GSGWKPVPLM-DM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAE 87 (106)
T ss_dssp HHHHHHHHTTTTTCHHHHHTTGGGTSCT--TSCCCCCCGG-GS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhcc--cCCHHHHcCC-CC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHH
Confidence 345666666654 699999888876654 4699999999 86 9999999999999999999997632 258
Q ss_pred HHHHHHHHHHHhcCChh
Q 041597 77 GAFQIVQSAGDVLTNPE 93 (149)
Q Consensus 77 ~~f~~i~~Ay~~L~d~~ 93 (149)
++|+.|++||++|+|+.
T Consensus 88 ~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 88 KVFELLQEAWDHFNTLG 104 (106)
T ss_dssp HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHcCcc
Confidence 89999999999999985
No 22
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.78 E-value=1.8e-19 Score=134.15 Aligned_cols=68 Identities=15% Similarity=0.291 Sum_probs=61.9
Q ss_pred ccChhhhcCCCCCCCC--HHHHHHHHHHHHHHhCCCCCCChh------HHHHHHHHHHHHHhcCChhhHHHHhhhcc
Q 041597 35 KSTRYDILAITDPEVD--NITVKKQYKRLALMLHPEKNPSIA------AEGAFQIVQSAGDVLTNPEKREAYYRRSF 103 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as--~~~Ik~ayr~l~~~~HPD~~~~~~------a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 103 (149)
..|||+|||| +++++ .++||++||+|++++|||+++... +.+.|..|++||+||+||.+|..||..+.
T Consensus 3 ~~d~Y~iLgl-~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 78 (174)
T 3hho_A 3 AMNYFELFGL-PIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQ 78 (174)
T ss_dssp -CCHHHHTTC-CSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCHHHHcCc-CCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHcc
Confidence 4699999999 99887 999999999999999999987654 56899999999999999999999998764
No 23
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.78 E-value=1.8e-20 Score=130.81 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=59.8
Q ss_pred ccChhhhcCCCCCCCCH--HHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhc
Q 041597 35 KSTRYDILAITDPEVDN--ITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRS 102 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~--~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~ 102 (149)
..++|+|||| +++++. ++||+|||+|++++|||+++. .++|++|++||+||+||.+|..||.++
T Consensus 7 ~~~~Y~iLgv-~~~as~~~~eIk~aYr~la~~~HPDk~~~---~e~f~~I~~AYevL~d~~~R~~~~~~~ 72 (114)
T 1gh6_A 7 SLQLMDLLGL-ERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFG 72 (114)
T ss_dssp HHHHHHHTTC-CTTSCSCHHHHHHHHHHTTTTCCTTTCCT---TTTTHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred hhhHHHHcCC-CCCCCcCHHHHHHHHHHHHHHHCCCCCcc---HHHHHHHHHHHHHHCCHHHHHHhhhcc
Confidence 3589999999 999999 999999999999999999876 589999999999999999999999765
No 24
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.77 E-value=4.9e-20 Score=137.88 Aligned_cols=80 Identities=20% Similarity=0.307 Sum_probs=69.6
Q ss_pred CccHHHHHHHHHHhccCCCccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChh----HHHHHHHHHHHHHhcCC
Q 041597 16 LPNLDDYFTAYRVHQLPEMKSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIA----AEGAFQIVQSAGDVLTN 91 (149)
Q Consensus 16 ~~~i~~~~~~~~~~~~~~~~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~----a~~~f~~i~~Ay~~L~d 91 (149)
..+|+.|+..+...+.. ..|+|+|||| .+.++.++||++||+|++++|||+++... +++.|+.|++||++|+|
T Consensus 99 ~~niRaLLssl~~vl~~--~~d~Y~vLgv-~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD 175 (182)
T 1n4c_A 99 ERNIRALLSTMHTVLWA--GETKWKPVGM-ADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN 175 (182)
T ss_dssp TTCHHHHHHHGGGGSCT--TCCCCCCCCG-GGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC--ccchhhcCCC-CCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCC
Confidence 46788888777655542 2699999999 99999999999999999999999987654 78899999999999999
Q ss_pred hhhHHHH
Q 041597 92 PEKREAY 98 (149)
Q Consensus 92 ~~~R~~Y 98 (149)
+.+|..|
T Consensus 176 ~~kR~~Y 182 (182)
T 1n4c_A 176 QGQKPLY 182 (182)
T ss_dssp HHSSCCC
T ss_pred HHhhhhC
Confidence 9999876
No 25
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.77 E-value=7.9e-20 Score=122.94 Aligned_cols=74 Identities=20% Similarity=0.270 Sum_probs=65.7
Q ss_pred CCccHHHHHHHHHHhccCCCccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChh----HHHHHHHHHHHHHhcC
Q 041597 15 NLPNLDDYFTAYRVHQLPEMKSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIA----AEGAFQIVQSAGDVLT 90 (149)
Q Consensus 15 ~~~~i~~~~~~~~~~~~~~~~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~----a~~~f~~i~~Ay~~L~ 90 (149)
...+|+.|+..+...+... .++|++||| .+.|+.++||+|||++++++|||+++... +++.|+.|++||+||.
T Consensus 14 k~~~ir~lL~~l~~~L~~~--~~~y~~Lgv-~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~ 90 (92)
T 2qwo_B 14 KERNIRALLSTMHTVLWAG--ETKWKPVGM-ADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFE 90 (92)
T ss_dssp HTTCHHHHHHHGGGTSCTT--CCSCCCCCG-GGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHhccc--ccCCeecCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 3567999999999988754 578999999 99999999999999999999999987643 7889999999999996
Q ss_pred C
Q 041597 91 N 91 (149)
Q Consensus 91 d 91 (149)
+
T Consensus 91 ~ 91 (92)
T 2qwo_B 91 N 91 (92)
T ss_dssp H
T ss_pred h
Confidence 4
No 26
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.77 E-value=2e-19 Score=117.89 Aligned_cols=60 Identities=22% Similarity=0.279 Sum_probs=55.5
Q ss_pred ccChhhhcCCCCCC--CCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHH
Q 041597 35 KSTRYDILAITDPE--VDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAY 98 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~--as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Y 98 (149)
..++|+|||| +++ ++.++||++||+|++++|||+++. .+.|+.|++||++|+|+.+|..+
T Consensus 10 ~~~~y~iLgl-~~~~~a~~~eIk~aYr~la~~~HPDk~~~---~~~f~~i~~AYe~L~~~~~r~~~ 71 (79)
T 1faf_A 10 KERLLELLKL-PRQLWGDFGRMQQAYKQQSLLLHPDKGGS---HALMQELNSLWGTFKTEVYNLRM 71 (79)
T ss_dssp HHHHHHHHTC-CSSSTTCHHHHHHHHHHHHHHSSGGGSCC---HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC-CCCCCCCHHHHHHHHHHHHHHHCcCCCCC---HHHHHHHHHHHHHHhhHHHHHHH
Confidence 3489999999 999 999999999999999999999865 68999999999999999999873
No 27
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.77 E-value=2.7e-19 Score=132.90 Aligned_cols=66 Identities=18% Similarity=0.270 Sum_probs=61.0
Q ss_pred ChhhhcCCCCCCC--CHHHHHHHHHHHHHHhCCCCCCChh------HHHHHHHHHHHHHhcCChhhHHHHhhhcc
Q 041597 37 TRYDILAITDPEV--DNITVKKQYKRLALMLHPEKNPSIA------AEGAFQIVQSAGDVLTNPEKREAYYRRSF 103 (149)
Q Consensus 37 d~Y~iLgv~~~~a--s~~~Ik~ayr~l~~~~HPD~~~~~~------a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 103 (149)
|||+|||| ++++ +..+||++||+|+++||||+++... +.+.|+.|++||+||+||.+|..||..+.
T Consensus 2 d~y~lLgl-~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 75 (171)
T 1fpo_A 2 DYFTLFGL-PARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH 75 (171)
T ss_dssp HHHHHTTC-CSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CHHHHCCC-CCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence 89999999 9998 9999999999999999999987643 46799999999999999999999998764
No 28
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.77 E-value=2.5e-19 Score=136.73 Aligned_cols=72 Identities=19% Similarity=0.362 Sum_probs=62.4
Q ss_pred cCCCccChhhhcCCCCCC--CCHHHHHHHHHHHHHHhCCCCCCChh------HHHHHHHHHHHHHhcCChhhHHHHhhhc
Q 041597 31 LPEMKSTRYDILAITDPE--VDNITVKKQYKRLALMLHPEKNPSIA------AEGAFQIVQSAGDVLTNPEKREAYYRRS 102 (149)
Q Consensus 31 ~~~~~~d~Y~iLgv~~~~--as~~~Ik~ayr~l~~~~HPD~~~~~~------a~~~f~~i~~Ay~~L~d~~~R~~YD~~~ 102 (149)
......|||+|||| +++ ++.++||++||+|++++|||+++... +.+.|+.|++||+||+||.+|..||...
T Consensus 38 ~~~~~~d~y~lLgv-~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l 116 (207)
T 3bvo_A 38 APDPTRDYFSLMDC-NRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKL 116 (207)
T ss_dssp CCCTTCCHHHHTTS-CSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHcCC-CCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHh
Confidence 33446799999999 875 79999999999999999999987542 5678999999999999999999999755
Q ss_pred c
Q 041597 103 F 103 (149)
Q Consensus 103 ~ 103 (149)
.
T Consensus 117 ~ 117 (207)
T 3bvo_A 117 H 117 (207)
T ss_dssp T
T ss_pred c
Confidence 3
No 29
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.77 E-value=1.7e-20 Score=139.56 Aligned_cols=66 Identities=14% Similarity=0.099 Sum_probs=58.5
Q ss_pred CccChhhhcCCCCCCCC--HHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhcc
Q 041597 34 MKSTRYDILAITDPEVD--NITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRSF 103 (149)
Q Consensus 34 ~~~d~Y~iLgv~~~~as--~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 103 (149)
...|+|+|||| +++|+ .++||+|||++++++|||++++ .++|++|++||++|+||.+|+.||++|.
T Consensus 9 ~~~d~Y~vLGl-~~~as~~~~eIKkAYRkLa~~~HPDk~~~---~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 9 ESLQLMDLLGL-ERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHHTTTC-CGGGTTCHHHHHHHHHHHGGGCSCC---C---CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred ccccHHHHcCC-CCCCCcCHHHHHHHHHHHHHHHCcCCCCC---HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 34699999999 99998 6999999999999999999876 4799999999999999999999999984
No 30
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.74 E-value=5.1e-19 Score=118.20 Aligned_cols=60 Identities=23% Similarity=0.240 Sum_probs=54.9
Q ss_pred ccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChh--HHHHHHHHHHHHHhcCChhhH
Q 041597 35 KSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIA--AEGAFQIVQSAGDVLTNPEKR 95 (149)
Q Consensus 35 ~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~--a~~~f~~i~~Ay~~L~d~~~R 95 (149)
..++|+|||| .++|+.++||++||+|+++||||+++... +++.|+.|++||++|+|...|
T Consensus 15 ~~~~y~vLgv-~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 15 LKEVTSVVEQ-AWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp HHHHHHHHHH-TTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence 3489999999 99999999999999999999999998753 789999999999999987655
No 31
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.72 E-value=1.7e-18 Score=129.73 Aligned_cols=69 Identities=20% Similarity=0.388 Sum_probs=61.4
Q ss_pred cCCCccChhhhc------CCCCC-CCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhc
Q 041597 31 LPEMKSTRYDIL------AITDP-EVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRS 102 (149)
Q Consensus 31 ~~~~~~d~Y~iL------gv~~~-~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~ 102 (149)
......|||+|| |+ ++ +++.++||++||+|++++|||+++. +.+.|+.|++||+||+||.+|..||..+
T Consensus 6 ~~~~~~d~y~ll~~~~p~~~-~~~~a~~~eIk~aYr~la~~~HPDk~~~--a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 6 QRRFTSTFYELFPKTFPKKL-PIWTIDQSRLRKEYRQLQAQHHPDMAQQ--GSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp -CCCSCCTGGGCTTTCTTCS-CCSCCCHHHHHHHHHHHHHTCCTTSCCS--CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHhccccccCC-CCCCCCHHHHHHHHHHHHHHhCcCCCcc--HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 344556999999 46 54 9999999999999999999999986 6789999999999999999999999876
No 32
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.70 E-value=2.4e-18 Score=151.36 Aligned_cols=76 Identities=26% Similarity=0.472 Sum_probs=40.8
Q ss_pred CCccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHhcCChhhHHHHhhhccccCCCC
Q 041597 33 EMKSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPS-IAAEGAFQIVQSAGDVLTNPEKREAYYRRSFCSKKSK 109 (149)
Q Consensus 33 ~~~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~ 109 (149)
....|||+|||| +++|+.++||+|||+|++++|||+++. ..+.++|++|++||++|+||.+|..||++|..+....
T Consensus 18 ~~~~~~y~~lg~-~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~~ 94 (780)
T 3apo_A 18 RHDQNFYSLLGV-SKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN 94 (780)
T ss_dssp -----CHHHHTC-CTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--------
T ss_pred CCCCCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccccC
Confidence 345699999999 999999999999999999999999864 3488999999999999999999999999997665543
No 33
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.69 E-value=7e-18 Score=108.27 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=50.7
Q ss_pred cChhhhcCCCCC-CCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhH
Q 041597 36 STRYDILAITDP-EVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKR 95 (149)
Q Consensus 36 ~d~Y~iLgv~~~-~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R 95 (149)
.++|+|||| ++ +++.++||++||+|++++|||++.+ .+.|+.|++||++|+++..|
T Consensus 14 ~~~y~iLgl-~~~~a~~~eIk~ayr~l~~~~HPDk~g~---~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 14 KEALQILNL-TENTLTKKKLKEVHRKIMLANHPDKGGS---PFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp HHHHHHTTC-CTTTCCHHHHHHHHHHHHHHHCGGGTCC---HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcCC-CCCCCCHHHHHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHHhhhhhc
Confidence 489999999 98 7999999999999999999999754 57999999999999987654
No 34
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.57 E-value=3.2e-15 Score=120.24 Aligned_cols=98 Identities=26% Similarity=0.392 Sum_probs=84.7
Q ss_pred hHHHHHHHHhhCCCCccHHHHHHHHHHhccCCCccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCChh----HHH
Q 041597 2 AIKQLKAAKDFNGNLPNLDDYFTAYRVHQLPEMKSTRYDILAITDPEVDNITVKKQYKRLALMLHPEKNPSIA----AEG 77 (149)
Q Consensus 2 A~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~~~~~~----a~~ 77 (149)
|+..++++.+++|+...+...+..+..........++|.+||+ .++++.++|+++|+++++++|||+.+... +.+
T Consensus 348 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~-~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~ 426 (450)
T 2y4t_A 348 AIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGV-KRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEK 426 (450)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCS-STTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCC-CccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHH
Confidence 7889999999999988888888877777766667799999999 99999999999999999999999998754 788
Q ss_pred HHHHHHHHHHhcCChhhHHHHhh
Q 041597 78 AFQIVQSAGDVLTNPEKREAYYR 100 (149)
Q Consensus 78 ~f~~i~~Ay~~L~d~~~R~~YD~ 100 (149)
.|+.|.+||++|+|+++|..||+
T Consensus 427 ~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 427 KFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp HHHHHHHHHHHSSGGGGC-----
T ss_pred HHHHHHHHHHHhCCHHHHHhccC
Confidence 99999999999999999999997
No 35
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.09 E-value=1.2e-10 Score=73.23 Aligned_cols=51 Identities=20% Similarity=0.128 Sum_probs=45.2
Q ss_pred ChhhhcCCCCCC---CCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCC
Q 041597 37 TRYDILAITDPE---VDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTN 91 (149)
Q Consensus 37 d~Y~iLgv~~~~---as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d 91 (149)
.-|.|||| +++ ++.++|+++||+|...+|||+..+ ......|++|+++|..
T Consensus 5 EA~~ILgv-~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS---~yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 5 ESCKILNI-EESKGDLNMDKINNRFNYLFEVNDKEKGGS---FYLQSKVYRAAERLKW 58 (65)
T ss_dssp HHHHHTTC-CGGGTCCSHHHHHHHHHHHHHHTCGGGTCC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC-CCCcCcCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHHHH
Confidence 45899999 888 999999999999999999999876 4677789999999853
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.42 E-value=0.0021 Score=55.54 Aligned_cols=51 Identities=20% Similarity=0.265 Sum_probs=39.2
Q ss_pred ccCCCccChhhhcCCCCCCCCH--HHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHh
Q 041597 30 QLPEMKSTRYDILAITDPEVDN--ITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDV 88 (149)
Q Consensus 30 ~~~~~~~d~Y~iLgv~~~~as~--~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~ 88 (149)
+......|||.|||+ +.+... .+|+++||++++..+++ .+++.+|..|..|
T Consensus 623 ~~~~~~~~~~~~lG~-~~~~~~lr~~~~~ayr~la~~~~~~-------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 623 WLKDNKASTNHILGF-PFTSHGLRLGVEASLRSLARVAPTQ-------RHRYTLVDMANKV 675 (681)
T ss_dssp HHTSCCCSSSEETTE-ESSHHHHHHHHHHHHHHHHHHCSSH-------HHHHHHHHHHHHH
T ss_pred HHHccCCCCcccCCC-CCChHHHHHHHHHHHHHHHHhCCCh-------HHHHHHHHHhccc
Confidence 344456679999999 776554 67999999999965554 4788889988876
No 37
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=58.67 E-value=22 Score=21.20 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhh
Q 041597 55 KKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYR 100 (149)
Q Consensus 55 k~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~ 100 (149)
.+.+|..++.-||+.... +..+.|.+.|..|++.++....+.
T Consensus 16 ~~~~r~~~~~~~p~~~~~----eisk~lg~~Wk~ls~~eK~~y~~~ 57 (76)
T 1hry_A 16 SRDQRRKMALENPRMRNS----EISKQLGYQWKMLTEAEKWPFFQE 57 (76)
T ss_dssp HHHHHHHHHHHCSCCSSS----HHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCHH----HHHHHHHhHHHhCCHHHHHHHHHH
Confidence 345566667778987543 677889999999987666554443
No 38
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=56.63 E-value=25 Score=20.55 Aligned_cols=42 Identities=17% Similarity=0.132 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhh
Q 041597 55 KKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYR 100 (149)
Q Consensus 55 k~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~ 100 (149)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 14 ~~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~~eK~~y~~~ 55 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH----NAELSKMLGKSWKALTLAEKRPFVEE 55 (71)
T ss_dssp HHHHHHHHHTTCTTSC----HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3456677777788865 46788899999999997766654443
No 39
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=56.61 E-value=25 Score=21.42 Aligned_cols=42 Identities=26% Similarity=0.218 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhh
Q 041597 55 KKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYR 100 (149)
Q Consensus 55 k~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~ 100 (149)
.+.+|..++.-||+... .+..+.|.+.|..|++.++....+.
T Consensus 19 ~~~~r~~~~~~~p~~~~----~eisk~lg~~Wk~ls~~eK~~y~~~ 60 (82)
T 1wz6_A 19 CKRHRSLVRQEHPRLDN----RGATKILADWWAVLDPKEKQKYTDM 60 (82)
T ss_dssp HHHHHHHHHHHCSSSCT----THHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCH----HHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 44566677778898654 3678889999999997766555444
No 40
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=53.01 E-value=35 Score=20.66 Aligned_cols=42 Identities=26% Similarity=0.305 Sum_probs=31.0
Q ss_pred HHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhh
Q 041597 56 KQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRR 101 (149)
Q Consensus 56 ~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~ 101 (149)
+.+|..++.-||+.. ..+..+.|.+.|..|++.++...++..
T Consensus 17 ~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~eeK~~y~~~A 58 (81)
T 1i11_A 17 KDERRKILQAFPDMH----NSNISKILGSRWKAMTNLEKQPYYEEQ 58 (81)
T ss_dssp HHHHHHHHTTCSSCC----HHHHHHHHHHHHTTSCSGGGHHHHHHH
T ss_pred HHHHHHHHHHCCCCC----HHHHHHHHHhhhhhCCHHHHHHHHHHH
Confidence 445666666788754 467888999999999988877665543
No 41
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.65 E-value=28 Score=21.57 Aligned_cols=45 Identities=11% Similarity=0.034 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhc
Q 041597 55 KKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRS 102 (149)
Q Consensus 55 k~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~ 102 (149)
-+.+|..++.-||+.. + ..+..+.|.+.|..|++.++....+..-
T Consensus 17 ~~e~R~~ik~~~P~~~-~--~~eisK~lge~Wk~ls~eeK~~y~~~A~ 61 (81)
T 2d7l_A 17 LEENRSNILSDNPDFS-D--EADIIKEGMIRFRVLSTEERKVWANKAK 61 (81)
T ss_dssp HHHHHHHHHHHCTTCC-S--HHHHHHHHHHHHSSSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCc-h--hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456777778899975 2 4688899999999999777766555443
No 42
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=51.04 E-value=42 Score=20.90 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhh
Q 041597 55 KKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYR 100 (149)
Q Consensus 55 k~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~ 100 (149)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 19 ~~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~eeK~~Y~~~ 60 (92)
T 2crj_A 19 LNERREQIRTRHPDLP----FPEITKMLGAEWSKLQPAEKQRYLDE 60 (92)
T ss_dssp HHHHHHHHHHHCTTCC----HHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455666677788854 46888899999999998877655443
No 43
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=50.68 E-value=39 Score=20.45 Aligned_cols=42 Identities=17% Similarity=0.132 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhh
Q 041597 55 KKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYR 100 (149)
Q Consensus 55 k~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~ 100 (149)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 18 ~~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~~eK~~y~~~ 59 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH----NAELSKMLGKSWKALTLAEKRPFVEE 59 (83)
T ss_dssp HHHHHHHHHHHCSSSC----HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4456777777899865 36788899999999997766554443
No 44
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=50.41 E-value=23 Score=28.23 Aligned_cols=27 Identities=7% Similarity=0.101 Sum_probs=21.1
Q ss_pred cChhhhcCCCCCCCCHHHHHHHHHHHHHHh
Q 041597 36 STRYDILAITDPEVDNITVKKQYKRLALML 65 (149)
Q Consensus 36 ~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~ 65 (149)
..|+++|.. +.+.++|+..++.+...+
T Consensus 219 ~~W~~~~~~---~vt~~~l~~i~~~il~~y 245 (358)
T 2pk2_A 219 KHWWEYVDA---TVTLELLDELTHEFLQIL 245 (358)
T ss_dssp CCTTTTSCS---SCCHHHHHHHHHHHHHHT
T ss_pred cchHHHHhc---cCCHHHHHHHHHHHHHHH
Confidence 358887754 358999999999998876
No 45
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.56 E-value=44 Score=20.49 Aligned_cols=42 Identities=10% Similarity=-0.034 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHh
Q 041597 56 KQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYY 99 (149)
Q Consensus 56 ~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD 99 (149)
+..|..++.-||+.... ..+..+.|.+.|..|++.++....+
T Consensus 28 ~~~r~~~k~~~p~~~~~--~~eisk~lg~~Wk~ls~~eK~~y~~ 69 (86)
T 2eqz_A 28 QTCREEHKKKNPEVPVN--FAEFSKKCSERWKTMSGKEKSKFDE 69 (86)
T ss_dssp HHHHHHHHHHCTTSCCC--HHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCc--HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 34555566678987543 3678889999999999776655444
No 46
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=47.49 E-value=36 Score=21.18 Aligned_cols=44 Identities=14% Similarity=0.127 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhc
Q 041597 55 KKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRS 102 (149)
Q Consensus 55 k~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~ 102 (149)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+...
T Consensus 32 ~~~~r~~~k~~~P~~~----~~eisk~lg~~Wk~ls~eeK~~Y~~~A~ 75 (90)
T 1wgf_A 32 SEEKRRQLQEERPELS----ESELTRLLARMWNDLSEKKKAKYKAREA 75 (90)
T ss_dssp HHHTHHHHHHHCTTSC----HHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3445666677788854 4688899999999999777666555544
No 47
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.53 E-value=42 Score=20.93 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhh
Q 041597 56 KQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYR 100 (149)
Q Consensus 56 ~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~ 100 (149)
+..|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 20 ~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~eeK~~y~~~ 60 (92)
T 2cs1_A 20 QDHRPQFLIENPKTS----LEDATLQIEELWKTLSEEEKLKYEEK 60 (92)
T ss_dssp HHHHHHHHHHCCSSC----HHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 445666667788864 46888999999999997766554443
No 48
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=44.68 E-value=45 Score=19.41 Aligned_cols=42 Identities=10% Similarity=-0.014 Sum_probs=29.8
Q ss_pred HHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhh
Q 041597 57 QYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYR 100 (149)
Q Consensus 57 ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~ 100 (149)
..|..++.-||+.... ..+..+.|.+.|..|++.++....+.
T Consensus 15 ~~r~~~~~~~p~~~~~--~~eisk~lg~~Wk~ls~~eK~~y~~~ 56 (71)
T 1ckt_A 15 TCREEHKKKHPDASVN--FSEFSKKCSERWKTMSAKEKGKFEDM 56 (71)
T ss_dssp HHHHHHHHHCTTCCCC--HHHHHHHHHHHHHTCCTTTSHHHHHH
T ss_pred HHHHHHHHHCCCCCCc--HHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 3455556678986542 36788899999999998876655443
No 49
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=43.59 E-value=56 Score=20.13 Aligned_cols=53 Identities=11% Similarity=0.052 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCChh---HHHHHHHHHHHHHhcCC-hhhHHHHhhhc
Q 041597 49 VDNITVKKQYKRLALMLHPEKNPSIA---AEGAFQIVQSAGDVLTN-PEKREAYYRRS 102 (149)
Q Consensus 49 as~~~Ik~ayr~l~~~~HPD~~~~~~---a~~~f~~i~~Ay~~L~d-~~~R~~YD~~~ 102 (149)
.-...++..++.+.+...|....... +...|.... +|..|.+ ..++.+|+.+.
T Consensus 6 ~r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~-~fkav~~E~eR~~lFeeYi 62 (77)
T 2cqn_A 6 SGMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEP-AFEDITLESERKRIFKDFM 62 (77)
T ss_dssp CSHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSH-HHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCH-HHHhcCCHHHHHHHHHHHH
Confidence 34667888999998888787766554 444444433 8999977 57777888877
No 50
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=43.46 E-value=46 Score=20.48 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhh
Q 041597 55 KKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYR 100 (149)
Q Consensus 55 k~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~ 100 (149)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 29 ~~~~r~~~~~~~P~~~----~~eisk~lg~~Wk~ls~eeK~~y~~~ 70 (87)
T 2e6o_A 29 AKKYRVEYTQMYPGKD----NRAISVILGDRWKKMKNEERRMYTLE 70 (87)
T ss_dssp HHHTHHHHHHHCTTSC----HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 3456666677788853 46788899999999997766554443
No 51
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=42.67 E-value=52 Score=19.58 Aligned_cols=42 Identities=10% Similarity=0.074 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhh
Q 041597 55 KKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYR 100 (149)
Q Consensus 55 k~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~ 100 (149)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 14 ~~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~~eK~~y~~~ 55 (79)
T 3u2b_C 14 SQIERRKIMEQSPDMH----NAEISKRLGKRWKLLKDSDKIPFIQE 55 (79)
T ss_dssp HHHHHHHHHTTSTTSC----HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCC----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3456666677788754 46788899999999987666554443
No 52
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=42.47 E-value=44 Score=20.08 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhh
Q 041597 56 KQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYR 100 (149)
Q Consensus 56 ~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~ 100 (149)
+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 15 ~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~eeK~~y~~~ 55 (80)
T 1gt0_D 15 RGQRRKMAQENPKMH----NSEISKRLGAEWKLLSETEKRPFIDE 55 (80)
T ss_dssp HHHHHHHHTTSTTSC----HHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 345566666788753 46788899999999997766555444
No 53
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=42.05 E-value=53 Score=19.47 Aligned_cols=41 Identities=10% Similarity=0.040 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhh
Q 041597 56 KQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYR 100 (149)
Q Consensus 56 ~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~ 100 (149)
+..|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 19 ~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~~eK~~y~~~ 59 (77)
T 1hme_A 19 SEYRPKIKGEHPGLS----IGDVAKKLGEMWNNTAADDKQPYEKK 59 (77)
T ss_dssp HHHHHHHHHHCTTCC----HHHHHHHHHHHHHHSCGGGSHHHHHH
T ss_pred HHHHHHHHHHCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 345555666788754 46888999999999998776654443
No 54
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=41.53 E-value=46 Score=21.16 Aligned_cols=42 Identities=17% Similarity=0.079 Sum_probs=30.3
Q ss_pred HHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhh
Q 041597 56 KQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRR 101 (149)
Q Consensus 56 ~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~ 101 (149)
+..|..++.-||+.. ..+..+.|.+.|..|++.++....+..
T Consensus 23 ~~~r~~ik~~~P~~~----~~eisk~lg~~Wk~ls~eeK~~Y~~~A 64 (99)
T 1k99_A 23 MEKRAKYAKLHPEMS----NLDLTKILSKKYKELPEKKKMKYIQDF 64 (99)
T ss_dssp HHHHHHHHTTCTTSC----SHHHHHHHHHHHHHSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345566666788864 358888999999999988776655443
No 55
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=40.82 E-value=53 Score=21.14 Aligned_cols=42 Identities=14% Similarity=0.050 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhh
Q 041597 55 KKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYR 100 (149)
Q Consensus 55 k~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~ 100 (149)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 41 ~~~~r~~~k~~~P~~~----~~eisk~lg~~Wk~ls~eeK~~Y~~~ 82 (106)
T 4euw_A 41 AQAARRKLADQYPHLH----NAELSKTLGKLWRLLNESEKRPFVEE 82 (106)
T ss_dssp HHHHHHHHHHHCTTSC----HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5566777778889864 35788899999999997766655543
No 56
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=40.77 E-value=56 Score=19.91 Aligned_cols=42 Identities=14% Similarity=0.155 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhh
Q 041597 55 KKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYR 100 (149)
Q Consensus 55 k~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~ 100 (149)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 16 ~~~~r~~~~~~~P~~~----~~eisk~lg~~Wk~ls~eeK~~y~~~ 57 (85)
T 1j46_A 16 SRDQRRKMALENPRMR----NSEISKQLGYQWKMLTEAEKWPFFQE 57 (85)
T ss_dssp HHHHHHHHHHHSTTSC----HHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 3445666667788764 46788899999999987666554443
No 57
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=40.44 E-value=59 Score=19.85 Aligned_cols=41 Identities=17% Similarity=0.132 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhh
Q 041597 56 KQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYR 100 (149)
Q Consensus 56 ~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~ 100 (149)
+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 15 ~~~r~~~~~~~P~~~----~~eisk~lg~~Wk~ls~eeK~~y~~~ 55 (86)
T 2lef_A 15 KEMRANVVAESTLKE----SAAINQILGRRWHALSREEQAKYYEL 55 (86)
T ss_dssp HHHHHHHHHHSSCCC----HHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 445666667788863 46788899999999997666554443
No 58
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=40.22 E-value=56 Score=20.81 Aligned_cols=40 Identities=18% Similarity=0.049 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHh
Q 041597 56 KQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYY 99 (149)
Q Consensus 56 ~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD 99 (149)
+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 30 ~~~r~~i~~~~P~~~----~~eisk~lg~~Wk~ls~eeK~~Y~~ 69 (102)
T 2co9_A 30 RDTQAAIKGQNPNAT----FGEVSKIVASMWDGLGEEQKQVYKK 69 (102)
T ss_dssp HHHHHHHHHHCTTSC----HHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC----HHHHHHHHHHHHccCCHHHHHHHHH
Confidence 345566666788864 4678889999999999776655444
No 59
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=39.58 E-value=58 Score=19.18 Aligned_cols=38 Identities=3% Similarity=-0.059 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHh
Q 041597 55 KKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYY 99 (149)
Q Consensus 55 k~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD 99 (149)
.+.+|..++.-||+.. ..+..+.|.+.|..|++ |..|.
T Consensus 15 ~~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~---K~~y~ 52 (73)
T 3nm9_A 15 LNSARESIKRENPGIK----VTEVAKRGGELWRAMKD---KSEWE 52 (73)
T ss_dssp HHHHHHHHHHHSSSCC----HHHHHHHHHHHHHHCSC---CHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHHcCCc---hHHHH
Confidence 3455666677788865 36888899999999987 55453
No 60
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=37.33 E-value=64 Score=19.02 Aligned_cols=50 Identities=10% Similarity=0.078 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCChhHHHHHHHH---HHHHHhcCC-hh-hHHHHhhhcc
Q 041597 52 ITVKKQYKRLALMLHPEKNPSIAAEGAFQIV---QSAGDVLTN-PE-KREAYYRRSF 103 (149)
Q Consensus 52 ~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i---~~Ay~~L~d-~~-~R~~YD~~~~ 103 (149)
++..++|.+|.+...=|..-+ -++..+.| .--|.+|.| |. ++..|+.+..
T Consensus 3 eEae~aF~~lL~~~~V~s~ws--weqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y~~ 57 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWS--FSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLS 57 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCC--HHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCc--HHHHHHHhccCCCccccccCCHHHHHHHHHHHHh
Confidence 567889999988775444333 45666666 347999997 64 7778887753
No 61
>1r5q_A KAI A, circadian oscillation regulator; four-helix-bundle, gene regulation; 2.00A {Nostoc SP} SCOP: a.186.1.1
Probab=36.88 E-value=70 Score=20.86 Aligned_cols=34 Identities=12% Similarity=0.178 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHH
Q 041597 51 NITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAG 86 (149)
Q Consensus 51 ~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay 86 (149)
.++++..||.+++.|--+-..-+.+-+.| |+.|+
T Consensus 11 l~~L~~~YR~ill~YF~~d~~~n~~Id~f--Vn~aF 44 (102)
T 1r5q_A 11 LQQLKSDYRQILLSYFTTDKALKEKIDKF--INAVF 44 (102)
T ss_dssp HHHHHHHHHHHHHHTTSCC--CHHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHH--HHHHH
Confidence 45789999999999977665554444444 44443
No 62
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=36.30 E-value=72 Score=19.32 Aligned_cols=55 Identities=18% Similarity=0.184 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHH--HHHhcCC-hhhHHHHhhhcc
Q 041597 47 PEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQS--AGDVLTN-PEKREAYYRRSF 103 (149)
Q Consensus 47 ~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~--Ay~~L~d-~~~R~~YD~~~~ 103 (149)
.-++.++.+.+|+.|....+=+-. ..-.+....|.. -|.+|.+ .+++..|+.+..
T Consensus 10 ~~~t~eea~~~F~~LL~e~~V~~~--~tWe~~~~~i~~DpRY~al~~~~eRk~~F~ey~~ 67 (71)
T 1uzc_A 10 TWNTKEEAKQAFKELLKEKRVPSN--ASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKV 67 (71)
T ss_dssp CCCSHHHHHHHHHHHHHHTTCCTT--CCHHHHHHHHHTSGGGGGCSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCcCCC--CCHHHHHHHHccCccccccCCHHHHHHHHHHHHH
Confidence 356899999999999998753333 223333334432 5777877 467778877653
No 63
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=35.24 E-value=17 Score=25.25 Aligned_cols=31 Identities=19% Similarity=0.168 Sum_probs=27.5
Q ss_pred hhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 041597 38 RYDILAITDPEVDNITVKKQYKRLALMLHPEK 69 (149)
Q Consensus 38 ~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD~ 69 (149)
++..|.| ....+.++++++-..+..++||+-
T Consensus 34 ~l~~k~i-g~~Its~eL~~~AqeiL~q~hp~Y 64 (138)
T 1qqr_A 34 LLKTLAI-GDTITSQELLAQAQSILNKNHPGY 64 (138)
T ss_dssp EEEEECT-TCEEEHHHHHHHHHHHHHHHSTTE
T ss_pred hhccccc-CcccCHHHHHHHHHHHHHhcCCCc
Confidence 3677888 889999999999999999999984
No 64
>1v2z_A Circadian clock protein KAIA homolog; all alpha, riken structural genomics/proteomics initiative, structural genomics; 1.80A {Thermosynechococcus elongatus} SCOP: a.186.1.1 PDB: 1q6a_A 1q6b_A 1suy_A 1sv1_A
Probab=32.25 E-value=71 Score=21.17 Aligned_cols=29 Identities=10% Similarity=0.111 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCChhHHHHH
Q 041597 51 NITVKKQYKRLALMLHPEKNPSIAAEGAF 79 (149)
Q Consensus 51 ~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f 79 (149)
.++++..||.+++.|--+-..-+.+-+.|
T Consensus 18 l~~L~~~YR~ill~YF~~d~~~nq~Id~F 46 (111)
T 1v2z_A 18 LDELRSIYRTIVLEYFNTDAKVNERIDEF 46 (111)
T ss_dssp HHHHHHHHHHHHHHTTCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 56789999999999977765544444444
No 65
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.02 E-value=1e+02 Score=21.31 Aligned_cols=44 Identities=9% Similarity=-0.015 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhh
Q 041597 55 KKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYR 100 (149)
Q Consensus 55 k~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~ 100 (149)
-+..|..++.-||+..-. ..+..+.|.+.|..|++.++....+.
T Consensus 27 ~~~~r~~~k~~~p~~~~~--~~eisk~lg~~Wk~ls~~eK~~y~~~ 70 (173)
T 2yrq_A 27 VQTCREEHKKKHPDASVN--FSEFSKKCSERWKTMSAKEKGKFEDM 70 (173)
T ss_dssp HHHHHHHHHHHCTTCCCC--HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 345566677789995322 46888999999999998876555443
No 66
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=31.75 E-value=43 Score=23.91 Aligned_cols=12 Identities=17% Similarity=0.725 Sum_probs=6.1
Q ss_pred CHHHHHHHHHHH
Q 041597 50 DNITVKKQYKRL 61 (149)
Q Consensus 50 s~~~Ik~ayr~l 61 (149)
+..+|+++|+.+
T Consensus 172 ~~~tI~~~~~~l 183 (207)
T 1c9b_A 172 ADVTIRQSYRLI 183 (207)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 445555555444
No 67
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=31.69 E-value=55 Score=23.16 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=17.7
Q ss_pred ChhhhcCCCCCCCCHHHHHHHHHHHHHHhC
Q 041597 37 TRYDILAITDPEVDNITVKKQYKRLALMLH 66 (149)
Q Consensus 37 d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~H 66 (149)
+.=++.|| +..+|+++|+.+...+-
T Consensus 170 ei~~~~~v-----s~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 170 EVAEVARV-----TEVTVRNRYKELVEKLK 194 (200)
T ss_dssp HHHHHHTC-----CHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCC-----CHHHHHHHHHHHHHHcC
Confidence 44445555 88889999998887653
No 68
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=30.81 E-value=92 Score=22.68 Aligned_cols=41 Identities=10% Similarity=0.058 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhh
Q 041597 56 KQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYR 100 (149)
Q Consensus 56 ~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~ 100 (149)
+..|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 22 ~~~r~~~k~~~P~~~----~~eisk~lge~Wk~Ls~~EK~~y~~~ 62 (214)
T 3tq6_A 22 KEQLPIFKAQNPDAK----TTELIRRIAQRWRELPDSKKKIYQDA 62 (214)
T ss_dssp HHHHHHHHHHCTTSC----HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCC----HHHHHHHHHHHHHccCHHhhhHHHHH
Confidence 445666677789876 46888899999999998776665543
No 69
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=29.86 E-value=93 Score=23.06 Aligned_cols=42 Identities=10% Similarity=0.058 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhh
Q 041597 55 KKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYR 100 (149)
Q Consensus 55 k~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~ 100 (149)
-+.+|...+.-||+.. ..+..+.|.+.|..|++.++....|.
T Consensus 53 ~~e~r~~~k~~~P~~~----~~eisk~lge~Wk~Ls~~EK~~y~~~ 94 (238)
T 3tmm_A 53 SKEQLPIFKAQNPDAK----TTELIRRIAQRWRELPDSKKKIYQDA 94 (238)
T ss_dssp HHHHHHHHHHHSTTSC----HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3445666677788875 46888899999999998776665543
No 70
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=28.59 E-value=76 Score=22.37 Aligned_cols=62 Identities=18% Similarity=0.239 Sum_probs=34.7
Q ss_pred hHHHHHHHHhhCCCC-ccHHH-----HHHHHHHhccCCCccChhhhcCCCCCCCCHHHHHHHHHHHHHHhCCC
Q 041597 2 AIKQLKAAKDFNGNL-PNLDD-----YFTAYRVHQLPEMKSTRYDILAITDPEVDNITVKKQYKRLALMLHPE 68 (149)
Q Consensus 2 A~~~~~~a~~~~~~~-~~i~~-----~~~~~~~~~~~~~~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~HPD 68 (149)
|..+++++.....-. ..+.. +..+|...=...+-.|.-.++++ +..+|.+.|+.+...+.=+
T Consensus 33 A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~v-----~~~~i~~~~~~l~~~L~~~ 100 (200)
T 1ais_B 33 AARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARV-----DKKEIGRSYRFIARNLNLT 100 (200)
T ss_dssp HHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTS-----CHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCC-----CHHHHHHHHHHHHHHhccc
Confidence 566777776654432 22222 22233322222222255555565 8999999999999876543
No 71
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=28.53 E-value=37 Score=22.04 Aligned_cols=22 Identities=14% Similarity=0.379 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCC
Q 041597 48 EVDNITVKKQYKRLALMLHPEK 69 (149)
Q Consensus 48 ~as~~~Ik~ayr~l~~~~HPD~ 69 (149)
+-++++|+.+|+.|++.+|--.
T Consensus 67 Nks~nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 67 NKTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCS
T ss_pred cCCHHHHHHHHHHHHHHHHHHh
Confidence 4599999999999999987554
No 72
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=26.26 E-value=1.3e+02 Score=20.34 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=28.6
Q ss_pred HHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhh
Q 041597 58 YKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYR 100 (149)
Q Consensus 58 yr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~ 100 (149)
.+..++.-||+.+ ..+..+.|.+.|..|++.++....+.
T Consensus 19 ~~~ki~~~~P~~~----~~eisk~lg~~Wk~ls~~eK~~y~~~ 57 (159)
T 2gzk_A 19 QRRKMALENPRMR----NSEISKQLGYQWKMLTEAEKWPFFQE 57 (159)
T ss_dssp HHHHHHHHCSSCC----HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCC----HHHHHHHHHHHHHHhhHHHhccHHHH
Confidence 4444556799854 46888999999999998777665554
No 73
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=26.13 E-value=69 Score=25.27 Aligned_cols=60 Identities=10% Similarity=0.107 Sum_probs=35.0
Q ss_pred hHHHHHHHHhhCCCC-ccHHHHH-----HHHHHhccCCCccChhhhcCCCCCCCCHHHHHHHHHHHHHHhC
Q 041597 2 AIKQLKAAKDFNGNL-PNLDDYF-----TAYRVHQLPEMKSTRYDILAITDPEVDNITVKKQYKRLALMLH 66 (149)
Q Consensus 2 A~~~~~~a~~~~~~~-~~i~~~~-----~~~~~~~~~~~~~d~Y~iLgv~~~~as~~~Ik~ayr~l~~~~H 66 (149)
|..+|+++.....-. +.++.++ .+|...-...+-.+..++++| +..+|.+.|+.+.+.+.
T Consensus 150 A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~~v-----~~keigr~~k~l~~~L~ 215 (345)
T 4bbr_M 150 AKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHV-----KTKEFGKTLNIMKNILR 215 (345)
T ss_dssp HHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHHTC-----CTTHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHhCC-----CHHHHHHHHHHHHHHhC
Confidence 566677776544322 2233333 333333222333366677777 78899999999987665
No 74
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=25.06 E-value=61 Score=21.14 Aligned_cols=18 Identities=22% Similarity=0.124 Sum_probs=12.1
Q ss_pred hHHHHHHHHhhCCCCccH
Q 041597 2 AIKQLKAAKDFNGNLPNL 19 (149)
Q Consensus 2 A~~~~~~a~~~~~~~~~i 19 (149)
|+..+.++..++|+...+
T Consensus 30 A~~~~~~al~~~p~~~~~ 47 (164)
T 3sz7_A 30 AIDLYTQALSIAPANPIY 47 (164)
T ss_dssp HHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHhCCcCHHH
Confidence 667777777777765433
No 75
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=24.58 E-value=52 Score=19.91 Aligned_cols=43 Identities=9% Similarity=-0.013 Sum_probs=28.4
Q ss_pred HHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhh
Q 041597 56 KQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYR 100 (149)
Q Consensus 56 ~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~ 100 (149)
+..|..++.-||+.... ..+..+.|.+.|..|++.++....+.
T Consensus 20 ~~~r~~~~~~~p~~~~~--~~eisk~lg~~Wk~ls~~eK~~y~~~ 62 (83)
T 1aab_A 20 QTSREEHKKKHPDASVN--FSEFSKKCSERWKTMSAKEKGKFEDM 62 (83)
T ss_dssp HHHHHHHTTSCTTTCCC--SSSSHHHHHHHHTTSCTTHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCc--HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34455566678886431 13566789999999998776655443
No 76
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=22.77 E-value=43 Score=20.63 Aligned_cols=46 Identities=17% Similarity=0.128 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHhhhc
Q 041597 47 PEVDNITVKKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYYRRS 102 (149)
Q Consensus 47 ~~as~~~Ik~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~ 102 (149)
.+.+...+-+.|-.+... +|+..-. |++|-+.|.-.++|+.||-.-
T Consensus 8 ~~~SL~~lt~kFi~l~~~-~~~~~i~---------l~~aa~~L~v~~kRRiYDI~N 53 (76)
T 1cf7_A 8 HEKSLGLLTTKFVSLLQE-AKDGVLD---------LKLAADTLAVRQKRRIYDITN 53 (76)
T ss_dssp TTTCHHHHHHHHHHHHHH-SSTTEEE---------HHHHHHHTTTCCTHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHh-CCCCcCc---------HHHHHHHhCCccceehhhHHH
Confidence 355777788888887653 4543322 677777887547999999654
No 77
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=22.62 E-value=1.2e+02 Score=17.55 Aligned_cols=18 Identities=11% Similarity=-0.068 Sum_probs=13.3
Q ss_pred hHHHHHHHHhhCCCCccH
Q 041597 2 AIKQLKAAKDFNGNLPNL 19 (149)
Q Consensus 2 A~~~~~~a~~~~~~~~~i 19 (149)
|+..++++..++|....+
T Consensus 23 A~~~~~~al~~~p~~~~~ 40 (111)
T 2l6j_A 23 AVHCYDQLITAQPQNPVG 40 (111)
T ss_dssp HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhcCCCCHHH
Confidence 677888888888875433
No 78
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.53 E-value=2e+02 Score=19.73 Aligned_cols=41 Identities=10% Similarity=-0.005 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHhcCChhhHHHHh
Q 041597 55 KKQYKRLALMLHPEKNPSIAAEGAFQIVQSAGDVLTNPEKREAYY 99 (149)
Q Consensus 55 k~ayr~l~~~~HPD~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD 99 (149)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 113 ~~~~r~~~~~~~p~~~----~~ei~k~lg~~Wk~ls~~eK~~y~~ 153 (173)
T 2yrq_A 113 CSEYRPKIKGEHPGLS----IGDVAKKLGEMWNNTAADDKQPYEK 153 (173)
T ss_dssp HHHHHHHHHHHCSSSC----HHHHHHHHHHHHHHSCGGGHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3344555555677643 4578889999999999877665444
No 79
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=21.25 E-value=1.3e+02 Score=17.31 Aligned_cols=17 Identities=12% Similarity=0.008 Sum_probs=12.6
Q ss_pred hHHHHHHHHhhCCCCcc
Q 041597 2 AIKQLKAAKDFNGNLPN 18 (149)
Q Consensus 2 A~~~~~~a~~~~~~~~~ 18 (149)
|+..++++.+++|+...
T Consensus 19 A~~~~~~al~~~p~~~~ 35 (99)
T 2kc7_A 19 ALQALEEFLQTEPVGKD 35 (99)
T ss_dssp HHHHHHHHHHHCSSTHH
T ss_pred HHHHHHHHHHHCCCcHH
Confidence 67788888888887543
No 80
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=20.95 E-value=2.5e+02 Score=20.51 Aligned_cols=30 Identities=13% Similarity=-0.020 Sum_probs=15.9
Q ss_pred HHHHHHHHhCCCCCCChh---HHHHHHHHHHHH
Q 041597 57 QYKRLALMLHPEKNPSIA---AEGAFQIVQSAG 86 (149)
Q Consensus 57 ayr~l~~~~HPD~~~~~~---a~~~f~~i~~Ay 86 (149)
.|.+.++..+|+...-.. ....|.++...|
T Consensus 256 ~~~~~~~~~~P~~~~~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 256 RYLSQLKDAHRSHPFIKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHc
Confidence 455556778888642221 344555555444
Done!