BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041598
         (315 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2L7P|A Chain A, Ashh2 A Cw Domain
          Length = 100

 Score = 39.7 bits (91), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 5/64 (7%)

Query: 20 QEQWAPCDDCSKWRKLPTDAL----LPPKWTCSDNVWDSIRCSCSAAEEMIQKDLENLLR 75
          +  W  CDDC KWR++P   +       +W C +N  D     CS ++EM  +++   L 
Sbjct: 25 ESAWVRCDDCFKWRRIPASVVGSIDESSRWICMNNS-DKRFADCSKSQEMSNEEINEELG 83

Query: 76 VGRE 79
          +G++
Sbjct: 84 IGQD 87


>pdb|2YWM|A Chain A, Crystal Structure Of Glutaredoxin-Like Protein From
           Aquifex Aeolicus
 pdb|2YWM|B Chain B, Crystal Structure Of Glutaredoxin-Like Protein From
           Aquifex Aeolicus
 pdb|2YWM|C Chain C, Crystal Structure Of Glutaredoxin-Like Protein From
           Aquifex Aeolicus
 pdb|2YWM|D Chain D, Crystal Structure Of Glutaredoxin-Like Protein From
           Aquifex Aeolicus
          Length = 229

 Score = 28.1 bits (61), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 54  SIRC-SCSAAEEMIQKDLENLLR-VGRESKKRKIVESQRRDQQNEPSGLDALATAAVLGD 111
           +I C SC  AEE++++ +E +   VG++  K  I       ++ E  G+D + T  + GD
Sbjct: 31  AIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPTIVIEGD 90


>pdb|2AYT|A Chain A, The Crystal Structure Of A Protein Disulfide
           Oxidoreductase From Aquifex Aeolicus
 pdb|2AYT|B Chain B, The Crystal Structure Of A Protein Disulfide
           Oxidoreductase From Aquifex Aeolicus
          Length = 237

 Score = 28.1 bits (61), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 54  SIRC-SCSAAEEMIQKDLENLLR-VGRESKKRKIVESQRRDQQNEPSGLDALATAAVLGD 111
           +I C SC  AEE++++ +E +   VG++  K  I       ++ E  G+D + T  + GD
Sbjct: 31  AIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPTIVIEGD 90


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.128    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,323,677
Number of Sequences: 62578
Number of extensions: 351148
Number of successful extensions: 545
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 544
Number of HSP's gapped (non-prelim): 4
length of query: 315
length of database: 14,973,337
effective HSP length: 99
effective length of query: 216
effective length of database: 8,778,115
effective search space: 1896072840
effective search space used: 1896072840
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)