Query 041598
Match_columns 315
No_of_seqs 144 out of 269
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 14:54:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041598.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041598hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l7p_A Histone-lysine N-methyl 99.8 3.5E-21 1.2E-25 157.1 3.3 72 6-78 11-86 (100)
2 2e61_A Zinc finger CW-type PWW 99.7 4.1E-19 1.4E-23 136.2 4.0 52 15-67 10-66 (69)
3 4gut_A Lysine-specific histone 94.7 0.0037 1.3E-07 64.6 -1.2 89 20-120 90-189 (776)
4 1we9_A PHD finger family prote 91.9 0.1 3.5E-06 37.6 2.9 31 19-49 18-54 (64)
5 1wee_A PHD finger family prote 90.9 0.2 6.7E-06 37.3 3.6 29 21-49 29-62 (72)
6 2lv9_A Histone-lysine N-methyl 89.1 0.25 8.5E-06 39.0 3.0 33 18-50 37-73 (98)
7 3o70_A PHD finger protein 13; 89.0 0.26 8.9E-06 36.8 2.9 30 20-49 30-63 (68)
8 3kqi_A GRC5, PHD finger protei 88.6 0.16 5.6E-06 38.0 1.6 31 19-49 21-57 (75)
9 3o7a_A PHD finger protein 13 v 87.4 0.34 1.2E-05 33.9 2.6 29 20-48 15-47 (52)
10 2k16_A Transcription initiatio 86.8 0.47 1.6E-05 35.1 3.1 30 20-49 30-64 (75)
11 2kgg_A Histone demethylase jar 86.3 0.35 1.2E-05 33.9 2.1 34 15-48 10-49 (52)
12 2vpb_A Hpygo1, pygopus homolog 79.5 0.78 2.7E-05 34.0 1.7 18 15-32 16-34 (65)
13 1wep_A PHF8; structural genomi 77.7 1.1 3.7E-05 33.8 2.1 32 19-50 23-60 (79)
14 1wem_A Death associated transc 74.3 1.5 5.1E-05 32.6 2.1 14 20-33 27-40 (76)
15 2rsd_A E3 SUMO-protein ligase 72.6 2.6 8.9E-05 30.9 3.0 32 18-49 19-61 (68)
16 2ri7_A Nucleosome-remodeling f 61.1 3 0.0001 34.9 1.4 32 19-50 19-56 (174)
17 3kv5_D JMJC domain-containing 56.6 2 6.7E-05 42.8 -0.5 30 20-49 49-84 (488)
18 2ku7_A MLL1 PHD3-CYP33 RRM chi 55.6 2.9 0.0001 32.2 0.5 10 23-32 2-11 (140)
19 1weu_A Inhibitor of growth fam 54.6 5.3 0.00018 31.6 1.8 30 21-50 47-82 (91)
20 1wen_A Inhibitor of growth fam 53.7 7.3 0.00025 29.1 2.4 30 21-50 27-62 (71)
21 3lqh_A Histone-lysine N-methyl 53.4 4.6 0.00016 35.4 1.4 16 20-35 18-33 (183)
22 2xb1_A Pygopus homolog 2, B-ce 51.1 6.3 0.00022 31.4 1.8 15 19-33 15-30 (105)
23 2g6q_A Inhibitor of growth pro 50.1 7.7 0.00026 28.3 1.9 29 21-49 22-56 (62)
24 3c6w_A P28ING5, inhibitor of g 48.6 8.4 0.00029 27.7 1.9 28 21-48 20-53 (59)
25 2jmi_A Protein YNG1, ING1 homo 45.2 13 0.00045 29.2 2.7 29 21-49 37-71 (90)
26 1wew_A DNA-binding family prot 43.4 11 0.00039 28.1 2.0 31 19-49 26-68 (78)
27 1n93_X P40 nucleoprotein; RNA 40.9 8.8 0.0003 36.8 1.3 16 157-172 161-176 (375)
28 2vnf_A ING 4, P29ING4, inhibit 37.1 16 0.00056 26.2 1.9 28 21-48 21-54 (60)
29 1ug2_A 2610100B20RIK gene prod 30.9 20 0.00068 29.1 1.6 15 162-176 72-86 (95)
30 1f62_A Transcription factor WS 30.6 30 0.001 23.4 2.3 32 18-49 10-46 (51)
31 1x4i_A Inhibitor of growth pro 29.6 22 0.00074 26.4 1.6 30 20-49 16-51 (70)
32 3pur_A Lysine-specific demethy 25.8 26 0.00089 35.6 1.8 31 18-48 53-89 (528)
33 3kv4_A PHD finger protein 8; e 24.0 26 0.00089 34.6 1.4 31 19-49 16-52 (447)
34 2yql_A PHD finger protein 21A; 21.8 63 0.0022 22.4 2.7 29 21-49 19-52 (56)
35 2ku3_A Bromodomain-containing 20.4 61 0.0021 24.0 2.5 31 19-49 29-62 (71)
No 1
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=99.81 E-value=3.5e-21 Score=157.10 Aligned_cols=72 Identities=28% Similarity=0.678 Sum_probs=60.9
Q ss_pred ccCCCCccCCCCCCCCCeEecccCccccCCCCCC----CCCCCceeecCCcCCCCCCCCcccccChHHHHHHHHhhH
Q 041598 6 YMAPRGDNMSPLWEQEQWAPCDDCSKWRKLPTDA----LLPPKWTCSDNVWDSIRCSCSAAEEMIQKDLENLLRVGR 78 (315)
Q Consensus 6 ~~~~~~f~~r~~~e~~~WVQCD~C~KWRrLP~~~----~lPd~W~C~mN~WD~~~~sCsaPEE~t~~eid~ll~~~~ 78 (315)
|++--.....+.....+|||||.|+|||+||.++ .+|++|||+||+ |+.|++|++|||++++||+.+|+++.
T Consensus 11 ~~~~d~~~~~~~~~~~~WVQCD~C~KWRrLP~~~~~~~~~pd~W~C~mN~-D~~~nsCs~PEE~~~~ei~~~l~~~~ 86 (100)
T 2l7p_A 11 FMVVDVTIEDSYSTESAWVRCDDCFKWRRIPASVVGSIDESSRWICMNNS-DKRFADCSKSQEMSNEEINEELGIGQ 86 (100)
T ss_dssp CCCCCSSCSSCCSSSSEEEECTTTCCEEEECHHHHTTSTTSSCCCGGGSS-CSSSCSTTSCCSSCHHHHHHHHTCCC
T ss_pred eeeeeeccCCCCCCCCeEEeeCCCCccccCChhHccccCCCCCceeCCCC-CCCCCCCCCccCCCHHHHHHHhcccc
Confidence 3444444444555699999999999999999864 479999999998 99999999999999999999999864
No 2
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=99.75 E-value=4.1e-19 Score=136.20 Aligned_cols=52 Identities=33% Similarity=0.769 Sum_probs=47.4
Q ss_pred CCCCCCCCeEecc--cCccccCCCCCC---CCCCCceeecCCcCCCCCCCCcccccCh
Q 041598 15 SPLWEQEQWAPCD--DCSKWRKLPTDA---LLPPKWTCSDNVWDSIRCSCSAAEEMIQ 67 (315)
Q Consensus 15 r~~~e~~~WVQCD--~C~KWRrLP~~~---~lPd~W~C~mN~WD~~~~sCsaPEE~t~ 67 (315)
...++..+||||| .|+|||+||..+ .+|++|||+||+ |+.+++|++|||+++
T Consensus 10 ~~~~~~~~WVQCd~p~C~KWR~LP~~~~~~~lpd~W~C~mN~-d~~~~~Cs~pEE~~~ 66 (69)
T 2e61_A 10 SGFGQCLVWVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQNT-DVQYNRCDIPEETWT 66 (69)
T ss_dssp SSCCCCCCEEECSSTTTCCEEECCSSCCTTTSCTTCCGGGCS-CGGGCSSSSCCCCCC
T ss_pred CCCCCCCeEEEeCccccCcccCCccccccccCCCcCEeCCCC-CCccCCCCCCcccCC
Confidence 3457789999999 999999999986 589999999999 999999999999865
No 3
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=94.72 E-value=0.0037 Score=64.61 Aligned_cols=89 Identities=18% Similarity=0.335 Sum_probs=55.0
Q ss_pred CCCeEecc--cCccccCCCCCC----CCCCCceeecCCcCC-----CCCCCCcccccChHHHHHHHHhhHHHhhhhhhhh
Q 041598 20 QEQWAPCD--DCSKWRKLPTDA----LLPPKWTCSDNVWDS-----IRCSCSAAEEMIQKDLENLLRVGRESKKRKIVES 88 (315)
Q Consensus 20 ~~~WVQCD--~C~KWRrLP~~~----~lPd~W~C~mN~WD~-----~~~sCsaPEE~t~~eid~ll~~~~~~kKr~~~~s 88 (315)
.+-||||- .|+|||+||... .++.+.+|.+-. +. .--.|+.||++-..+.... -| ....
T Consensus 90 l~~~~~c~~~~c~~~~~~~~~~~~~~~~~~~~~c~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~ 159 (776)
T 4gut_A 90 LPYWVQCTKPECRKWRQLTKEIQLTPQIAKTYRCGMKP-NTAIKPETSDHCSLPEDLRVLEVSNH-----WW----YSML 159 (776)
T ss_dssp SCCEEECCCTTTCCEEECCTTCCCCHHHHHHCCTTCCC-C-------CCGGGSCCCHHHHHTTST-----TT----TTTC
T ss_pred CcHhhhcCcccccchhhCCCcCCCChhhhheeeccCcc-CcccccccCCCCCCCcccchhhccch-----HH----HHhh
Confidence 48899999 999999999987 346799998853 22 3567999998533322110 01 0112
Q ss_pred hcccccCCCCchhhhhhhhhhccccCCCCCCC
Q 041598 89 QRRDQQNEPSGLDALATAAVLGDYAGDAGEPS 120 (315)
Q Consensus 89 ~~~~~~~~aSgLDALanaAilGen~~~~~~~s 120 (315)
.-|-.-..+...+-|. ++.-|.+||+...+
T Consensus 160 ~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~ 189 (776)
T 4gut_A 160 ILPPLLKDSVAAPLLS--AYYPDCVGMSPSCT 189 (776)
T ss_dssp CSCCCBSSCTTGGGCT--TSCGGGTTBCTTCC
T ss_pred cCCHhhhcCccHHHHH--hhCCCcccCCCCCc
Confidence 2333444555566663 66677777754443
No 4
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=91.93 E-value=0.1 Score=37.61 Aligned_cols=31 Identities=23% Similarity=0.509 Sum_probs=21.3
Q ss_pred CCCCeEecccCccccCCCCC-C-----CCCCCceeec
Q 041598 19 EQEQWAPCDDCSKWRKLPTD-A-----LLPPKWTCSD 49 (315)
Q Consensus 19 e~~~WVQCD~C~KWRrLP~~-~-----~lPd~W~C~m 49 (315)
+...|||||.|..|=.+.=- + ..++.|+|..
T Consensus 18 ~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~ 54 (64)
T 1we9_A 18 ADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPS 54 (64)
T ss_dssp SSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHH
T ss_pred CCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCC
Confidence 45789999999999443221 1 2367899865
No 5
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=90.91 E-value=0.2 Score=37.25 Aligned_cols=29 Identities=31% Similarity=0.793 Sum_probs=20.6
Q ss_pred CCeEecccCccccCCCC---C--CCCCCCceeec
Q 041598 21 EQWAPCDDCSKWRKLPT---D--ALLPPKWTCSD 49 (315)
Q Consensus 21 ~~WVQCD~C~KWRrLP~---~--~~lPd~W~C~m 49 (315)
..|||||.|..|-.+.= . ..+|+.|+|..
T Consensus 29 ~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~ 62 (72)
T 1wee_A 29 ERMLACDGCGVWHHTRCIGINNADALPSKFLCFR 62 (72)
T ss_dssp SCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHH
T ss_pred CcEEECCCCCCccCCeeeccCccccCCCcEECCC
Confidence 47999999999954322 1 13578999964
No 6
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=89.05 E-value=0.25 Score=39.02 Aligned_cols=33 Identities=24% Similarity=0.675 Sum_probs=24.1
Q ss_pred CCCCCeEecccCccccCCCC---C-CCCCCCceeecC
Q 041598 18 WEQEQWAPCDDCSKWRKLPT---D-ALLPPKWTCSDN 50 (315)
Q Consensus 18 ~e~~~WVQCD~C~KWRrLP~---~-~~lPd~W~C~mN 50 (315)
.+...|||||.|.+|--+.= . ..+|+.|||..-
T Consensus 37 ~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C 73 (98)
T 2lv9_A 37 HDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERC 73 (98)
T ss_dssp SCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTT
T ss_pred cCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCC
Confidence 44678999999999965432 1 256889999654
No 7
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=88.97 E-value=0.26 Score=36.75 Aligned_cols=30 Identities=20% Similarity=0.670 Sum_probs=21.6
Q ss_pred CCCeEecccCccccCCCCC---C-CCCCCceeec
Q 041598 20 QEQWAPCDDCSKWRKLPTD---A-LLPPKWTCSD 49 (315)
Q Consensus 20 ~~~WVQCD~C~KWRrLP~~---~-~lPd~W~C~m 49 (315)
...|||||.|..|--+.=- . ..|+.|+|..
T Consensus 30 ~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~ 63 (68)
T 3o70_A 30 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQK 63 (68)
T ss_dssp TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHH
T ss_pred CCCEEECCCCCccccccccCcCcccCCCcEECCC
Confidence 5579999999999644321 1 4678999953
No 8
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=88.56 E-value=0.16 Score=38.05 Aligned_cols=31 Identities=19% Similarity=0.492 Sum_probs=20.7
Q ss_pred CCCCeEecccCccccC-----CCC-CCCCCCCceeec
Q 041598 19 EQEQWAPCDDCSKWRK-----LPT-DALLPPKWTCSD 49 (315)
Q Consensus 19 e~~~WVQCD~C~KWRr-----LP~-~~~lPd~W~C~m 49 (315)
....|||||.|..|=- |.. .+...+.|+|..
T Consensus 21 ~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~ 57 (75)
T 3kqi_A 21 VTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPN 57 (75)
T ss_dssp TTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHH
T ss_pred CCCCEEEcCCCCCCEecccccccccccCCCCEEECCC
Confidence 3578999999999942 222 223347898854
No 9
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=87.40 E-value=0.34 Score=33.92 Aligned_cols=29 Identities=21% Similarity=0.683 Sum_probs=21.5
Q ss_pred CCCeEecccCccccCCCCC-C---CCCCCceee
Q 041598 20 QEQWAPCDDCSKWRKLPTD-A---LLPPKWTCS 48 (315)
Q Consensus 20 ~~~WVQCD~C~KWRrLP~~-~---~lPd~W~C~ 48 (315)
...+||||.|..|--+.=- + ..|+.|+|.
T Consensus 15 ~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~ 47 (52)
T 3o7a_A 15 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQ 47 (52)
T ss_dssp TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCH
T ss_pred CCCEEEcCCCCccccccccCCCcccCCCcEECc
Confidence 5689999999999655332 1 457899885
No 10
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=86.80 E-value=0.47 Score=35.12 Aligned_cols=30 Identities=23% Similarity=0.658 Sum_probs=20.9
Q ss_pred CCCeEecccCcccc-----CCCCCCCCCCCceeec
Q 041598 20 QEQWAPCDDCSKWR-----KLPTDALLPPKWTCSD 49 (315)
Q Consensus 20 ~~~WVQCD~C~KWR-----rLP~~~~lPd~W~C~m 49 (315)
...||+||.|..|= .|+......+.|||..
T Consensus 30 ~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~ 64 (75)
T 2k16_A 30 GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPK 64 (75)
T ss_dssp SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTT
T ss_pred CCCEEEcCCCCcccccccCCCCccCCCCCCEEChh
Confidence 45899999999995 3333333347999953
No 11
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=86.25 E-value=0.35 Score=33.92 Aligned_cols=34 Identities=21% Similarity=0.642 Sum_probs=22.7
Q ss_pred CCCCCCCCeEecc-cCccccCCCC-CC----CCCCCceee
Q 041598 15 SPLWEQEQWAPCD-DCSKWRKLPT-DA----LLPPKWTCS 48 (315)
Q Consensus 15 r~~~e~~~WVQCD-~C~KWRrLP~-~~----~lPd~W~C~ 48 (315)
++..+...||||| .|..|=.+.= ++ ..+++|+|.
T Consensus 10 ~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~ 49 (52)
T 2kgg_A 10 RPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICI 49 (52)
T ss_dssp CCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCS
T ss_pred CccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECC
Confidence 4455578899999 8999954432 22 124788884
No 12
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=79.46 E-value=0.78 Score=33.98 Aligned_cols=18 Identities=22% Similarity=0.776 Sum_probs=14.7
Q ss_pred CCCCCCCCeEecc-cCccc
Q 041598 15 SPLWEQEQWAPCD-DCSKW 32 (315)
Q Consensus 15 r~~~e~~~WVQCD-~C~KW 32 (315)
.+......||||| .|.+|
T Consensus 16 ~p~~~~~~mI~CD~~C~~W 34 (65)
T 2vpb_A 16 NEVNDDQDAILCEASCQKW 34 (65)
T ss_dssp SBCCTTSCEEEBTTTTCCE
T ss_pred CccCCCCCeEecccCcccc
Confidence 3445678999999 99999
No 13
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=77.73 E-value=1.1 Score=33.76 Aligned_cols=32 Identities=19% Similarity=0.368 Sum_probs=21.5
Q ss_pred CCCCeEecccCccccCC---CCC---CCCCCCceeecC
Q 041598 19 EQEQWAPCDDCSKWRKL---PTD---ALLPPKWTCSDN 50 (315)
Q Consensus 19 e~~~WVQCD~C~KWRrL---P~~---~~lPd~W~C~mN 50 (315)
....|||||.|..|=.+ ... +..++.|+|..-
T Consensus 23 ~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C 60 (79)
T 1wep_A 23 VNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDC 60 (79)
T ss_dssp SSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTT
T ss_pred CCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCc
Confidence 36789999999999321 111 134688999653
No 14
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=74.32 E-value=1.5 Score=32.57 Aligned_cols=14 Identities=29% Similarity=0.795 Sum_probs=12.1
Q ss_pred CCCeEecccCcccc
Q 041598 20 QEQWAPCDDCSKWR 33 (315)
Q Consensus 20 ~~~WVQCD~C~KWR 33 (315)
...|||||.|..|-
T Consensus 27 ~~~MI~Cd~C~~Wf 40 (76)
T 1wem_A 27 NRFMICCDRCEEWF 40 (76)
T ss_dssp SSCEEECSSSCCEE
T ss_pred CCCEEEeCCCCCcE
Confidence 45899999999993
No 15
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=72.59 E-value=2.6 Score=30.89 Aligned_cols=32 Identities=25% Similarity=0.656 Sum_probs=22.3
Q ss_pred CCCCCeEecc--cCccccCCCCC---------CCCCCCceeec
Q 041598 18 WEQEQWAPCD--DCSKWRKLPTD---------ALLPPKWTCSD 49 (315)
Q Consensus 18 ~e~~~WVQCD--~C~KWRrLP~~---------~~lPd~W~C~m 49 (315)
.+...+|||| .|..|-.+.=- ..+|++|||..
T Consensus 19 ~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~ 61 (68)
T 2rsd_A 19 MVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCEL 61 (68)
T ss_dssp SCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHH
T ss_pred cCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcC
Confidence 3456899999 59999754321 14578999964
No 16
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=61.07 E-value=3 Score=34.89 Aligned_cols=32 Identities=25% Similarity=0.602 Sum_probs=21.7
Q ss_pred CCCCeEecccCccccC---CCCC---CCCCCCceeecC
Q 041598 19 EQEQWAPCDDCSKWRK---LPTD---ALLPPKWTCSDN 50 (315)
Q Consensus 19 e~~~WVQCD~C~KWRr---LP~~---~~lPd~W~C~mN 50 (315)
+...|||||.|..|=. +... ...++.|+|..-
T Consensus 19 ~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C 56 (174)
T 2ri7_A 19 ESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQC 56 (174)
T ss_dssp TTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHH
T ss_pred CCCCEeECCCCCchhChhhcCCchhhccCccCeecCCC
Confidence 3567999999999932 2111 145789999763
No 17
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=56.60 E-value=2 Score=42.76 Aligned_cols=30 Identities=20% Similarity=0.450 Sum_probs=20.5
Q ss_pred CCCeEecccCccccCC-----CCC-CCCCCCceeec
Q 041598 20 QEQWAPCDDCSKWRKL-----PTD-ALLPPKWTCSD 49 (315)
Q Consensus 20 ~~~WVQCD~C~KWRrL-----P~~-~~lPd~W~C~m 49 (315)
...|||||.|..|=.. ... ...++.|+|..
T Consensus 49 ~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~ 84 (488)
T 3kv5_D 49 NRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPN 84 (488)
T ss_dssp TSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHH
T ss_pred CCCeEEccCCCCceeeeecCcCcccccCCCEEECCC
Confidence 5679999999999422 211 23467899954
No 18
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=55.58 E-value=2.9 Score=32.24 Aligned_cols=10 Identities=30% Similarity=1.302 Sum_probs=9.1
Q ss_pred eEecccCccc
Q 041598 23 WAPCDDCSKW 32 (315)
Q Consensus 23 WVQCD~C~KW 32 (315)
+||||.|..|
T Consensus 2 mi~c~~c~~w 11 (140)
T 2ku7_A 2 MMQCGKCDRW 11 (140)
T ss_dssp CCCCSCCSSC
T ss_pred ccccccCCCc
Confidence 6999999988
No 19
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=54.63 E-value=5.3 Score=31.58 Aligned_cols=30 Identities=27% Similarity=0.647 Sum_probs=19.5
Q ss_pred CCeEeccc--Cc-cccCCCCC-C--CCCCCceeecC
Q 041598 21 EQWAPCDD--CS-KWRKLPTD-A--LLPPKWTCSDN 50 (315)
Q Consensus 21 ~~WVQCD~--C~-KWRrLP~~-~--~lPd~W~C~mN 50 (315)
..+|+||. |. .|=.+.=- + ...++|||..-
T Consensus 47 g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C 82 (91)
T 1weu_A 47 GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRC 82 (91)
T ss_dssp SCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTT
T ss_pred CCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCc
Confidence 57999999 77 79433211 2 33579999653
No 20
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=53.74 E-value=7.3 Score=29.09 Aligned_cols=30 Identities=27% Similarity=0.680 Sum_probs=19.6
Q ss_pred CCeEeccc--Cc-cccCCCC-CC--CCCCCceeecC
Q 041598 21 EQWAPCDD--CS-KWRKLPT-DA--LLPPKWTCSDN 50 (315)
Q Consensus 21 ~~WVQCD~--C~-KWRrLP~-~~--~lPd~W~C~mN 50 (315)
..+|+||. |. .|=.+.= ++ ...++|||..-
T Consensus 27 g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C 62 (71)
T 1wen_A 27 GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRC 62 (71)
T ss_dssp SSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTT
T ss_pred CCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCC
Confidence 57999999 87 7843321 12 23489999653
No 21
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=53.42 E-value=4.6 Score=35.39 Aligned_cols=16 Identities=19% Similarity=0.812 Sum_probs=13.0
Q ss_pred CCCeEecccCccccCC
Q 041598 20 QEQWAPCDDCSKWRKL 35 (315)
Q Consensus 20 ~~~WVQCD~C~KWRrL 35 (315)
...|||||.|..|=..
T Consensus 18 ~~~MIqCd~C~~W~H~ 33 (183)
T 3lqh_A 18 ESKMMQCGKCDRWVHS 33 (183)
T ss_dssp TCCEEECTTTCCEEEG
T ss_pred CCCeEECCCCCcccch
Confidence 3469999999999644
No 22
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=51.14 E-value=6.3 Score=31.35 Aligned_cols=15 Identities=27% Similarity=0.891 Sum_probs=12.5
Q ss_pred CCCCeEecc-cCcccc
Q 041598 19 EQEQWAPCD-DCSKWR 33 (315)
Q Consensus 19 e~~~WVQCD-~C~KWR 33 (315)
....||||| .|..|=
T Consensus 15 ~~~~mi~Cdd~C~~Wf 30 (105)
T 2xb1_A 15 DDQDAILCEASCQKWF 30 (105)
T ss_dssp TTSCEEECTTTTCCEE
T ss_pred CCCCEEEecCCccccc
Confidence 456799998 999994
No 23
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=50.10 E-value=7.7 Score=28.26 Aligned_cols=29 Identities=24% Similarity=0.699 Sum_probs=18.3
Q ss_pred CCeEeccc--Cc-cccCCC---CCCCCCCCceeec
Q 041598 21 EQWAPCDD--CS-KWRKLP---TDALLPPKWTCSD 49 (315)
Q Consensus 21 ~~WVQCD~--C~-KWRrLP---~~~~lPd~W~C~m 49 (315)
..+|+||. |. .|=.+. ......++|||..
T Consensus 22 g~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~ 56 (62)
T 2g6q_A 22 GEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPK 56 (62)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHH
T ss_pred CCeeeeeCCCCCcccEecccCCcCcCCCCCEECcC
Confidence 46999999 65 884321 1123357999953
No 24
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=48.64 E-value=8.4 Score=27.73 Aligned_cols=28 Identities=25% Similarity=0.746 Sum_probs=17.9
Q ss_pred CCeEeccc--Cc-cccCCC---CCCCCCCCceee
Q 041598 21 EQWAPCDD--CS-KWRKLP---TDALLPPKWTCS 48 (315)
Q Consensus 21 ~~WVQCD~--C~-KWRrLP---~~~~lPd~W~C~ 48 (315)
..+|+||. |. .|=.+. ......++|||.
T Consensus 20 g~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp 53 (59)
T 3c6w_A 20 GEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCP 53 (59)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCH
T ss_pred CCeeEeeCCCCCCCCEecccCCcccCCCCCEECc
Confidence 46999999 87 684332 111234799995
No 25
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=45.18 E-value=13 Score=29.22 Aligned_cols=29 Identities=24% Similarity=0.557 Sum_probs=18.1
Q ss_pred CCeEecccCc---cccCCCC-CC--CCCCCceeec
Q 041598 21 EQWAPCDDCS---KWRKLPT-DA--LLPPKWTCSD 49 (315)
Q Consensus 21 ~~WVQCD~C~---KWRrLP~-~~--~lPd~W~C~m 49 (315)
..+|+||.|. .|=.+.= ++ ...+.|||..
T Consensus 37 g~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~ 71 (90)
T 2jmi_A 37 GPMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSK 71 (90)
T ss_dssp SSEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSH
T ss_pred CCEEEecCCCCccccCcCccCCCCcCCCCCccCCh
Confidence 4699999966 8843321 12 2336899853
No 26
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=43.36 E-value=11 Score=28.12 Aligned_cols=31 Identities=26% Similarity=0.785 Sum_probs=21.6
Q ss_pred CCCCeEecc--cCccccCC-----CCCC-----CCCCCceeec
Q 041598 19 EQEQWAPCD--DCSKWRKL-----PTDA-----LLPPKWTCSD 49 (315)
Q Consensus 19 e~~~WVQCD--~C~KWRrL-----P~~~-----~lPd~W~C~m 49 (315)
....||||| .|..|-.+ +... ..++.|||..
T Consensus 26 ~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~ 68 (78)
T 1wew_A 26 ETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEI 68 (78)
T ss_dssp CCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHH
T ss_pred CCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCC
Confidence 456899999 99999532 2111 3578999964
No 27
>1n93_X P40 nucleoprotein; RNA virus nucleoprotein tetramer, viral protein; 1.76A {Borna disease virus} SCOP: a.206.1.1 PDB: 1pp1_X*
Probab=40.93 E-value=8.8 Score=36.84 Aligned_cols=16 Identities=38% Similarity=0.509 Sum_probs=12.7
Q ss_pred cchhHHHHHHHHHHHH
Q 041598 157 CNVCMTVKRRFKTLML 172 (315)
Q Consensus 157 cnvc~tvkrrfktlm~ 172 (315)
|.--..|||||||+|-
T Consensus 161 ~t~s~QvqrrFKamMa 176 (375)
T 1n93_X 161 KAGAEQIKKRFKTMMA 176 (375)
T ss_dssp HSCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 4455789999999885
No 28
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=37.09 E-value=16 Score=26.16 Aligned_cols=28 Identities=29% Similarity=0.764 Sum_probs=18.2
Q ss_pred CCeEeccc--Cc-cccCCC---CCCCCCCCceee
Q 041598 21 EQWAPCDD--CS-KWRKLP---TDALLPPKWTCS 48 (315)
Q Consensus 21 ~~WVQCD~--C~-KWRrLP---~~~~lPd~W~C~ 48 (315)
..+|+||. |. .|=.+. ......++|||.
T Consensus 21 g~mi~CD~cdC~~~wfH~~Cvgl~~~p~g~w~C~ 54 (60)
T 2vnf_A 21 GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCP 54 (60)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCH
T ss_pred CCEEEeCCCCCCCceEehhcCCCCcCCCCCEECc
Confidence 57999999 66 784332 111234899995
No 29
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=30.87 E-value=20 Score=29.10 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHh
Q 041598 162 TVKRRFKTLMLRKKR 176 (315)
Q Consensus 162 tvkrrfktlm~rkkk 176 (315)
-|+.||+.||.-=++
T Consensus 72 qV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 72 EVSHRFRELMQLFHT 86 (95)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 599999999975443
No 30
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=30.60 E-value=30 Score=23.41 Aligned_cols=32 Identities=25% Similarity=0.559 Sum_probs=21.0
Q ss_pred CCCCCeEecccCccccCC-----CCCCCCCCCceeec
Q 041598 18 WEQEQWAPCDDCSKWRKL-----PTDALLPPKWTCSD 49 (315)
Q Consensus 18 ~e~~~WVQCD~C~KWRrL-----P~~~~lPd~W~C~m 49 (315)
++...-|.||.|.+|-.+ |....-.+.|||..
T Consensus 10 ~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~ 46 (51)
T 1f62_A 10 GEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPA 46 (51)
T ss_dssp SCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTT
T ss_pred CCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcC
Confidence 446689999999998532 22212236999964
No 31
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.61 E-value=22 Score=26.42 Aligned_cols=30 Identities=20% Similarity=0.483 Sum_probs=17.9
Q ss_pred CCCeEecccC---ccccCC---CCCCCCCCCceeec
Q 041598 20 QEQWAPCDDC---SKWRKL---PTDALLPPKWTCSD 49 (315)
Q Consensus 20 ~~~WVQCD~C---~KWRrL---P~~~~lPd~W~C~m 49 (315)
...+|+||.| ..|=.+ .......+.|||..
T Consensus 16 ~g~MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~ 51 (70)
T 1x4i_A 16 YGEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQ 51 (70)
T ss_dssp CSSEECCSCTTCSCCCEEHHHHTCSSCCSSCCCCHH
T ss_pred CCCEeEeCCCCCCccCCcccccccCcCCCCCEECCC
Confidence 3489999987 378221 11113357898853
No 32
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=25.77 E-value=26 Score=35.59 Aligned_cols=31 Identities=29% Similarity=0.741 Sum_probs=22.0
Q ss_pred CCCCCeEecccCccccCC---CCCC---CCCCCceee
Q 041598 18 WEQEQWAPCDDCSKWRKL---PTDA---LLPPKWTCS 48 (315)
Q Consensus 18 ~e~~~WVQCD~C~KWRrL---P~~~---~lPd~W~C~ 48 (315)
.....|||||.|..|=.. .... ...+.|+|-
T Consensus 53 n~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp 89 (528)
T 3pur_A 53 KNDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCP 89 (528)
T ss_dssp TSTTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCT
T ss_pred CcCCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECc
Confidence 457799999999999543 2221 345899993
No 33
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=24.01 E-value=26 Score=34.56 Aligned_cols=31 Identities=19% Similarity=0.399 Sum_probs=20.7
Q ss_pred CCCCeEecccCccccCC---CCC---CCCCCCceeec
Q 041598 19 EQEQWAPCDDCSKWRKL---PTD---ALLPPKWTCSD 49 (315)
Q Consensus 19 e~~~WVQCD~C~KWRrL---P~~---~~lPd~W~C~m 49 (315)
....|||||.|..|=.. ... ...++.|+|..
T Consensus 16 ~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~ 52 (447)
T 3kv4_A 16 VTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPN 52 (447)
T ss_dssp TTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHH
T ss_pred CCCCeEEcCCCCcccccccCCcCcccccCCCEEECCC
Confidence 35789999999999422 111 13457899954
No 34
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.78 E-value=63 Score=22.40 Aligned_cols=29 Identities=28% Similarity=0.580 Sum_probs=19.4
Q ss_pred CCeEecccCccccCCCC---CC-CC-CCCceeec
Q 041598 21 EQWAPCDDCSKWRKLPT---DA-LL-PPKWTCSD 49 (315)
Q Consensus 21 ~~WVQCD~C~KWRrLP~---~~-~l-Pd~W~C~m 49 (315)
...|.||.|.+|-.+-= .+ .. .+.|||..
T Consensus 19 g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~ 52 (56)
T 2yql_A 19 GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPR 52 (56)
T ss_dssp SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHH
T ss_pred CeEEEcCCCCcceECccCCCCcCCCCCCceEChh
Confidence 47899999999865431 11 23 36999953
No 35
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=20.39 E-value=61 Score=24.03 Aligned_cols=31 Identities=16% Similarity=0.342 Sum_probs=19.0
Q ss_pred CCCCeEecccCccccCCC---CCCCCCCCceeec
Q 041598 19 EQEQWAPCDDCSKWRKLP---TDALLPPKWTCSD 49 (315)
Q Consensus 19 e~~~WVQCD~C~KWRrLP---~~~~lPd~W~C~m 49 (315)
....-|.||.|..|=-+- ....-.+.|||..
T Consensus 29 ~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~ 62 (71)
T 2ku3_A 29 NSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRH 62 (71)
T ss_dssp SSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHH
T ss_pred CCCCEEECCCCCCccccccCCCCcCCCCCcCCcc
Confidence 456899999998873110 0011236899953
Done!