BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041600
         (160 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FM9|A Chain A, Human Topoisomerase Ii Alpha Bound To Dna
          Length = 763

 Score = 30.4 bits (67), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 1   FCKKSIENVKEYLVQYCEERKQAGFMMLPD 30
           F KK I++ KE+L  + E+R+Q   + LP+
Sbjct: 223 FSKKQIDDRKEWLTNFMEDRRQRKLLGLPE 252


>pdb|2H8K|A Chain A, Human Sulfotranferase Sult1c3 In Complex With Pap
 pdb|2H8K|B Chain B, Human Sulfotranferase Sult1c3 In Complex With Pap
          Length = 306

 Score = 28.5 bits (62), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 19/38 (50%)

Query: 8   NVKEYLVQYCEERKQAGFMMLPDPLSDFYEAVCVGLVL 45
           N K+ LV Y    + A FM  P  L +FYE    G V+
Sbjct: 142 NPKDCLVSYYHFHRMASFMPDPQNLEEFYEKFMSGKVV 179


>pdb|3QX3|A Chain A, Human Topoisomerase Iibeta In Complex With Dna And
           Etoposide
 pdb|3QX3|B Chain B, Human Topoisomerase Iibeta In Complex With Dna And
           Etoposide
          Length = 803

 Score = 28.5 bits (62), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 1   FCKKSIENVKEYLVQYCEERKQAGFMMLPD 30
           F KK I++ KE+L  + E+R+Q     LP+
Sbjct: 251 FSKKKIDDRKEWLTNFMEDRRQRRLHGLPE 280


>pdb|2REO|A Chain A, Crystal Structure Of Human Sulfotransferase 1c3 (Sult1c3)
           In Complex With Pap
          Length = 305

 Score = 28.5 bits (62), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 19/38 (50%)

Query: 8   NVKEYLVQYCEERKQAGFMMLPDPLSDFYEAVCVGLVL 45
           N K+ LV Y    + A FM  P  L +FYE    G V+
Sbjct: 141 NPKDCLVSYYHFHRMASFMPDPQNLEEFYEKFMSGKVV 178


>pdb|4HRF|A Chain A, Atomic Structure Of Dusp26
 pdb|4HRF|B Chain B, Atomic Structure Of Dusp26
 pdb|4HRF|C Chain C, Atomic Structure Of Dusp26
 pdb|4HRF|D Chain D, Atomic Structure Of Dusp26
          Length = 160

 Score = 27.3 bits (59), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 55  SQPP----MTNSVQRERTGKLTLRDLMIYFHLPIEEAARRMK 92
           SQP     + ++V   R+  L L  LM+Y HL + EA +++K
Sbjct: 83  SQPGGKILVHSAVGVSRSATLVLAYLMLYHHLTLVEAIKKVK 124


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,218,937
Number of Sequences: 62578
Number of extensions: 145458
Number of successful extensions: 273
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 268
Number of HSP's gapped (non-prelim): 6
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)