BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041600
(160 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q10S83|NLP1_ORYSJ Protein NLP1 OS=Oryza sativa subsp. japonica GN=NLP1 PE=2 SV=1
Length = 942
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Query: 65 RERTGK-LTLRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKIKSIQRRM 122
R +T K ++L+DL +F ++EAA+ + +CPT +K+ICR+ G++RWP RKIK + +
Sbjct: 616 RTKTEKTVSLQDLRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKVGHSL 674
>sp|O81791|RKD5_ARATH Protein RKD5 OS=Arabidopsis thaliana GN=RKD5 PE=3 SV=1
Length = 370
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 36/50 (72%)
Query: 69 GKLTLRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKIKSI 118
+L+L +L YF L I EA+R +K+ TV+KK CR G+ RWPHRKIKS+
Sbjct: 240 AELSLEELSKYFDLTIVEASRNLKVGLTVLKKKCREFGIPRWPHRKIKSL 289
>sp|Q5NB82|NLP3_ORYSJ Protein NLP3 OS=Oryza sativa subsp. japonica GN=NLP3 PE=3 SV=1
Length = 938
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 55 SQPPMTNSVQRERTGKLTLRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRK 114
++PP + E+T ++L L YF ++ AA+ + +CPT +K+ICR+ G+ RWP RK
Sbjct: 585 NKPPERRRGKAEKT--ISLDVLQQYFSGSLKNAAKSLGVCPTTMKRICRQHGISRWPSRK 642
Query: 115 IKSIQRRMS 123
I + R +S
Sbjct: 643 INKVNRSLS 651
>sp|Q9M9U9|RKD1_ARATH Protein RKD1 OS=Arabidopsis thaliana GN=RKD1 PE=3 SV=1
Length = 269
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 38/53 (71%)
Query: 71 LTLRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKIKSIQRRMS 123
L+ + +YF++PI +AAR + + T++KK CR G+ RWPHRK+ S+Q+ +S
Sbjct: 128 LSKETISLYFYMPITQAARELNIGLTLLKKRCRELGIKRWPHRKLMSLQKLIS 180
>sp|Q84TH9|NLP7_ARATH Protein NLP7 OS=Arabidopsis thaliana GN=NLP7 PE=1 SV=2
Length = 959
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 37/53 (69%)
Query: 71 LTLRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKIKSIQRRMS 123
++L L YF +++AA+ + +CPT +K+ICR+ G+ RWP RKIK + R ++
Sbjct: 592 ISLDVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKVNRSIT 644
>sp|Q0JC27|NLP2_ORYSJ Protein NLP2 OS=Oryza sativa subsp. japonica GN=NLP2 PE=2 SV=2
Length = 936
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 11/114 (9%)
Query: 56 QPPMTNSVQRERTG---KLTLRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPH 112
QP +++R+ ++L L YF +++AA+ + +CPT +K+ICR G+ RWP
Sbjct: 550 QPSSIGHAEKKRSTAEKNISLDVLRKYFSGSLKDAAKSLGVCPTTLKRICRHHGISRWPS 609
Query: 113 RKI-------KSIQRRMSVASGRLRSNDAEERANAQIEIQRLQEEMA-AACAGL 158
RKI K IQ ++ G RS + + + + L E++ +C GL
Sbjct: 610 RKINKVNRSLKKIQTVINSVHGVDRSLQYDPATGSLVPVVSLPEKLTFPSCDGL 663
>sp|Q8RWY4|NLP6_ARATH Protein NLP6 OS=Arabidopsis thaliana GN=NLP6 PE=2 SV=2
Length = 841
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 64 QRERTGK-LTLRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKIKSIQRRM 122
+R +T K ++L L YF +++AA+ + +CPT +K+ICR+ G+ RWP RKI + R +
Sbjct: 549 KRGKTEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSL 608
Query: 123 S 123
+
Sbjct: 609 T 609
>sp|Q9M1B0|NLP9_ARATH Protein NLP9 OS=Arabidopsis thaliana GN=NLP9 PE=2 SV=1
Length = 894
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 70 KLTLRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKIKSIQRRM 122
++L L YF +++AA+ + +CPT +K+ICR+ G+ RWP RKI + R +
Sbjct: 535 NVSLNVLQQYFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKVNRSL 587
>sp|Q9SFW8|NLP5_ARATH Protein NLP5 OS=Arabidopsis thaliana GN=NLP5 PE=2 SV=1
Length = 808
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 42 GLVLDDNLTTDDYSQPPMTNSVQRERTGK-LTLRDLMIYFHLPIEEAARRMKLCPTVVKK 100
G+ +++N T S +R + K +TL L YF +++AA+ + +CPT +K+
Sbjct: 520 GVSVNENNTFSSASGFNRVTEKKRTKAEKNITLDVLRQYFAGSLKDAAKSIGVCPTTLKR 579
Query: 101 ICRRDGLHRWPHRKIKSIQRRM 122
ICR+ G+ RWP RKIK + +
Sbjct: 580 ICRQHGIQRWPSRKIKKVGHSL 601
>sp|Q9LE38|NLP4_ARATH Protein NLP4 OS=Arabidopsis thaliana GN=NLP4 PE=2 SV=1
Length = 844
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 35/52 (67%)
Query: 71 LTLRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKIKSIQRRM 122
+TL L YF +++AA+ + +CPT +K+ICR+ G+ RWP RKIK + +
Sbjct: 559 ITLDVLRQYFAGSLKDAAKNIGVCPTTLKRICRQHGIQRWPSRKIKKVGHSL 610
>sp|Q9SVF1|NLP3_ARATH Protein NLP3 OS=Arabidopsis thaliana GN=NLP3 PE=2 SV=1
Length = 767
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 24/104 (23%)
Query: 43 LVLDDNLTTD---DYSQPPMTNS-----------------VQRERTGK----LTLRDLMI 78
L++DDN + D + PP+T R+R K +TL L
Sbjct: 447 LMVDDNQIAEEVRDAATPPLTQEDPKGKQVSFSFSSASSLENRKRKTKAEKDITLDTLRQ 506
Query: 79 YFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKIKSIQRRM 122
+F +++AA+ + +CPT +K+ICR++G+ RWP RKIK + +
Sbjct: 507 HFAGSLKDAAKNIGVCPTTLKRICRQNGISRWPSRKIKKVGHSL 550
>sp|Q8H111|NLP1_ARATH Protein NLP1 OS=Arabidopsis thaliana GN=NLP1 PE=2 SV=1
Length = 909
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 64 QRERTGK-LTLRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKIKSIQRRM 122
+R +T K + L L YF +++AA+ + +CPT +K+ICR+ G+ RWP RKIK + +
Sbjct: 601 KRAKTEKTIGLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIMRWPSRKIKKVGHSL 660
>sp|Q7X9B9|NLP2_ARATH Protein NLP2 OS=Arabidopsis thaliana GN=NLP2 PE=2 SV=3
Length = 963
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 65 RERTGK-LTLRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKIKSIQRRM 122
R +T K + L L YF +++AA+ + +CPT +K+ICR+ G+ RWP RKIK + +
Sbjct: 642 RTKTEKTIGLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSL 700
>sp|Q9LVU8|RKD4_ARATH Protein RKD4 OS=Arabidopsis thaliana GN=RKD4 PE=3 SV=1
Length = 256
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 70 KLTLRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKIKSIQ 119
KL + ++ +F PI +AA+ + + TV+KK CR G++RWPHRK+KS+
Sbjct: 147 KLEMSEIKQFFDRPIMKAAKELNVGLTVLKKRCRELGIYRWPHRKLKSLN 196
>sp|Q9FGD1|RKD3_ARATH Protein RKD3 OS=Arabidopsis thaliana GN=RKD3 PE=3 SV=1
Length = 277
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 30/41 (73%)
Query: 79 YFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKIKSIQ 119
YF++PI +AA+ + + T++KK CR G+ RWPHRK+ S+
Sbjct: 167 YFYMPITKAAKELNIGVTLLKKRCRELGIPRWPHRKLTSLN 207
>sp|Q9CA66|RKD2_ARATH Protein RKD2 OS=Arabidopsis thaliana GN=RKD2 PE=2 SV=1
Length = 298
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 79 YFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKIKSIQRRMSVASGRLRSNDAEERA 138
YF++PI +AA + + T++K+ CR G+ RWPHRK+ S+ +S L+ + EE A
Sbjct: 143 YFYMPITQAAIALNVGLTLLKRRCRELGIRRWPHRKLMSLNTLISNVK-ELQKMEGEENA 201
>sp|O22864|NLP8_ARATH Protein NLP8 OS=Arabidopsis thaliana GN=NLP8 PE=2 SV=1
Length = 947
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 13/66 (19%)
Query: 70 KLTLRDLMIYFHLPIEEAARRMK-------------LCPTVVKKICRRDGLHRWPHRKIK 116
++L L +F +++AA+ + CPT +K+ICR+ G+ RWP RKI
Sbjct: 590 NVSLSALQQHFSGSLKDAAKSLGGETSAYFQAWVYFFCPTTLKRICRQHGIMRWPSRKIN 649
Query: 117 SIQRRM 122
+ R +
Sbjct: 650 KVNRSL 655
>sp|B2BNE8|VNS2_AQRVG Non-structural protein 2 OS=Aquareovirus G (isolate American grass
carp/USA/PB01-155/-) GN=S9 PE=3 SV=1
Length = 350
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 57 PPMTNSVQRERTGKLTLRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKIK 116
P +T +V+++ +G RDL+ + +A L P + R+ G R PH +K
Sbjct: 26 PSLTITVRQDTSG----RDLVASTYSATGMSAAARNLNPLANFRHMRQPGYLRPPHTALK 81
Query: 117 SIQRRMSVASGRLRSNDAEERANAQIEIQRLQEEMAAACA 156
+ R ++ +G ++ R N QI++ E+ CA
Sbjct: 82 PLPLRTAIMNGY----ESLTRHNGQIQVTPGLRELIKECA 117
>sp|O46374|TOP2A_PIG DNA topoisomerase 2-alpha OS=Sus scrofa GN=TOP2A PE=2 SV=1
Length = 1533
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 1 FCKKSIENVKEYLVQYCEERKQAGFMMLPD 30
F KK I++ KE+L + E+R+Q + LP+
Sbjct: 653 FSKKQIDDRKEWLTHFMEDRRQRKLLGLPE 682
>sp|P11388|TOP2A_HUMAN DNA topoisomerase 2-alpha OS=Homo sapiens GN=TOP2A PE=1 SV=3
Length = 1531
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 1 FCKKSIENVKEYLVQYCEERKQAGFMMLPD 30
F KK I++ KE+L + E+R+Q + LP+
Sbjct: 653 FSKKQIDDRKEWLTNFMEDRRQRKLLGLPE 682
>sp|P22007|FNTB_YEAST Protein farnesyltransferase subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RAM1 PE=1
SV=2
Length = 431
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 9 VKEYLVQYCEERKQAGFMMLPDPLSDFYEA--VCVGLVLDDNLTTDDYSQPPMTNSVQRE 66
+++Y++ C+E++Q G P SDFY +GL + ++ + + P +
Sbjct: 335 LRDYILYCCQEKEQPGLRDKPGAHSDFYHTNYCLLGLAVAESSYSCTPNDSPHNIKCTPD 394
Query: 67 R-TGKLTLRDLMIYFHLPIE 85
R G L D+ + LPIE
Sbjct: 395 RLIGSSKLTDVNPVYGLPIE 414
>sp|Q94250|MBL_CAEEL Muscleblind-like protein OS=Caenorhabditis elegans GN=mbl-1 PE=1
SV=2
Length = 324
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 26 MMLPDPLSDFYEAVCVGLVLDDNLTTDDYSQPPMTNSVQRERTGKL 71
MM P L D Y A V VLD N +Y PP Q+ +T L
Sbjct: 161 MMYPQVLQDPYTAAAVNQVLDSN---QEYHSPPTDKKNQQLQTAAL 203
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,035,053
Number of Sequences: 539616
Number of extensions: 2018795
Number of successful extensions: 5047
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 5028
Number of HSP's gapped (non-prelim): 24
length of query: 160
length of database: 191,569,459
effective HSP length: 108
effective length of query: 52
effective length of database: 133,290,931
effective search space: 6931128412
effective search space used: 6931128412
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)