Query 041600
Match_columns 160
No_of_seqs 114 out of 229
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 14:57:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041600.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041600hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o3f_A Putative HTH-type trans 96.6 0.0017 5.9E-08 47.2 3.9 40 76-115 34-73 (111)
2 3iwf_A Transcription regulator 96.1 0.0034 1.2E-07 45.7 3.0 40 73-112 27-66 (107)
3 3e7l_A Transcriptional regulat 96.0 0.0096 3.3E-07 38.9 4.5 31 78-108 29-59 (63)
4 1tc3_C Protein (TC3 transposas 95.6 0.019 6.4E-07 33.3 4.2 25 81-105 21-45 (51)
5 1g2h_A Transcriptional regulat 95.4 0.018 6.1E-07 37.5 4.2 27 82-108 34-60 (61)
6 2vz4_A Tipal, HTH-type transcr 95.2 0.023 7.8E-07 40.6 4.5 26 81-107 1-26 (108)
7 1r8d_A Transcription activator 95.1 0.028 9.7E-07 40.1 4.7 73 81-154 2-94 (109)
8 1umq_A Photosynthetic apparatu 95.0 0.027 9.1E-07 39.5 4.2 29 79-107 52-80 (81)
9 1jko_C HIN recombinase, DNA-in 94.6 0.017 5.9E-07 34.2 2.1 27 81-107 21-47 (52)
10 2jn6_A Protein CGL2762, transp 94.6 0.059 2E-06 36.9 5.1 34 74-107 13-49 (97)
11 1eto_A FIS, factor for inversi 94.6 0.042 1.4E-06 39.5 4.4 30 78-107 68-97 (98)
12 2k9s_A Arabinose operon regula 94.4 0.099 3.4E-06 36.2 6.1 51 76-126 12-66 (107)
13 1ntc_A Protein (nitrogen regul 94.3 0.019 6.5E-07 40.0 2.0 28 80-107 63-90 (91)
14 2xi8_A Putative transcription 94.3 0.1 3.5E-06 32.1 5.3 39 73-113 6-44 (66)
15 2r1j_L Repressor protein C2; p 93.9 0.12 4.1E-06 32.0 5.1 39 73-113 10-48 (68)
16 3lsg_A Two-component response 93.7 0.11 3.6E-06 35.7 5.0 46 81-126 19-65 (103)
17 2b5a_A C.BCLI; helix-turn-heli 93.7 0.14 5E-06 32.5 5.3 40 73-114 15-54 (77)
18 1y7y_A C.AHDI; helix-turn-heli 93.6 0.16 5.5E-06 32.0 5.3 41 73-115 18-58 (74)
19 3b7h_A Prophage LP1 protein 11 93.4 0.24 8.3E-06 31.5 6.0 44 73-118 12-56 (78)
20 3bs3_A Putative DNA-binding pr 93.3 0.24 8.2E-06 31.4 5.9 43 71-115 13-55 (76)
21 3s8q_A R-M controller protein; 93.3 0.18 6.1E-06 32.9 5.4 39 73-113 16-54 (82)
22 3mlf_A Transcriptional regulat 93.3 0.56 1.9E-05 33.1 8.3 34 72-107 27-60 (111)
23 1adr_A P22 C2 repressor; trans 93.2 0.17 5.8E-06 32.0 5.0 40 73-114 10-49 (76)
24 3hug_A RNA polymerase sigma fa 93.2 0.18 6.3E-06 34.2 5.4 35 80-123 52-86 (92)
25 3omt_A Uncharacterized protein 93.2 0.27 9.2E-06 31.4 6.0 45 72-118 12-56 (73)
26 3mkl_A HTH-type transcriptiona 93.2 0.15 5.1E-06 36.1 5.1 45 81-125 23-67 (120)
27 3oou_A LIN2118 protein; protei 93.1 0.13 4.6E-06 35.6 4.8 46 81-126 21-67 (108)
28 3mn2_A Probable ARAC family tr 93.1 0.13 4.3E-06 35.6 4.6 46 81-126 18-64 (108)
29 3op9_A PLI0006 protein; struct 93.1 0.7 2.4E-05 32.0 8.5 44 73-118 14-57 (114)
30 2ewt_A BLDD, putative DNA-bind 92.9 0.34 1.2E-05 30.4 6.1 42 73-116 13-56 (71)
31 3kz3_A Repressor protein CI; f 92.8 0.31 1.1E-05 31.8 6.0 41 73-115 17-57 (80)
32 1j9i_A GPNU1 DBD;, terminase s 92.7 0.035 1.2E-06 36.4 1.2 30 82-115 3-32 (68)
33 2x48_A CAG38821; archeal virus 92.6 0.068 2.3E-06 32.9 2.4 23 81-103 31-53 (55)
34 2ef8_A C.ECOT38IS, putative tr 92.5 0.45 1.5E-05 30.7 6.4 35 73-109 15-49 (84)
35 1zug_A Phage 434 CRO protein; 92.5 0.19 6.6E-06 31.3 4.4 35 73-109 8-42 (71)
36 1s7o_A Hypothetical UPF0122 pr 92.3 0.59 2E-05 33.8 7.4 24 80-103 37-60 (113)
37 2kpj_A SOS-response transcript 92.3 0.36 1.2E-05 32.5 5.9 44 73-118 14-57 (94)
38 3f6w_A XRE-family like protein 92.3 0.36 1.2E-05 31.3 5.7 35 73-109 19-53 (83)
39 2k9q_A Uncharacterized protein 92.2 0.3 1E-05 31.6 5.2 33 73-107 7-39 (77)
40 3oio_A Transcriptional regulat 92.2 0.21 7.3E-06 34.8 4.8 51 76-126 16-69 (113)
41 1bl0_A Protein (multiple antib 91.9 0.26 9E-06 35.3 5.1 45 81-125 27-72 (129)
42 1b0n_A Protein (SINR protein); 91.7 0.46 1.6E-05 32.3 5.9 46 73-120 6-52 (111)
43 3fmy_A HTH-type transcriptiona 91.5 0.17 5.8E-06 33.1 3.4 40 73-115 16-55 (73)
44 2wiu_B HTH-type transcriptiona 91.5 0.25 8.7E-06 32.3 4.3 31 73-103 17-47 (88)
45 3mzy_A RNA polymerase sigma-H 91.5 0.3 1E-05 34.5 5.0 36 80-124 123-158 (164)
46 3qq6_A HTH-type transcriptiona 91.4 0.59 2E-05 30.7 6.0 32 73-106 15-46 (78)
47 1r8e_A Multidrug-efflux transp 91.3 0.27 9.1E-06 39.1 5.0 25 82-107 6-30 (278)
48 3o9x_A Uncharacterized HTH-typ 91.2 0.31 1.1E-05 34.9 4.9 40 73-115 76-115 (133)
49 3ivp_A Putative transposon-rel 91.1 2.5 8.5E-05 29.7 9.6 29 73-101 17-45 (126)
50 1r69_A Repressor protein CI; g 91.1 0.23 8E-06 30.8 3.6 35 73-109 6-40 (69)
51 3t76_A VANU, transcriptional r 91.1 0.49 1.7E-05 32.8 5.6 47 72-124 28-74 (88)
52 3c57_A Two component transcrip 91.0 0.31 1E-05 33.7 4.5 25 79-103 40-64 (95)
53 2p7v_B Sigma-70, RNA polymeras 90.9 0.28 9.4E-06 31.5 3.9 22 81-102 25-46 (68)
54 1lmb_3 Protein (lambda repress 90.9 0.59 2E-05 30.9 5.7 39 76-116 25-63 (92)
55 2l49_A C protein; P2 bacteriop 90.9 0.42 1.4E-05 32.0 5.0 35 73-109 9-43 (99)
56 1x57_A Endothelial differentia 90.8 0.61 2.1E-05 31.0 5.8 31 73-103 18-48 (91)
57 2o8x_A Probable RNA polymerase 90.6 0.32 1.1E-05 30.6 4.0 23 80-102 30-52 (70)
58 3eus_A DNA-binding protein; st 90.6 0.64 2.2E-05 31.0 5.7 33 73-107 19-51 (86)
59 1or7_A Sigma-24, RNA polymeras 90.2 0.31 1.1E-05 35.9 4.2 24 79-102 154-177 (194)
60 2zhg_A Redox-sensitive transcr 90.2 0.56 1.9E-05 35.6 5.7 26 82-108 12-37 (154)
61 3vk0_A NHTF, transcriptional r 90.0 0.71 2.4E-05 32.3 5.8 45 72-118 25-69 (114)
62 2cw1_A SN4M; lambda CRO fold, 90.0 0.41 1.4E-05 32.0 4.3 33 71-105 5-37 (65)
63 3t72_q RNA polymerase sigma fa 90.0 0.61 2.1E-05 33.2 5.4 47 81-136 39-88 (99)
64 3qao_A LMO0526 protein, MERR-l 90.0 0.3 1E-05 40.0 4.2 27 81-108 3-29 (249)
65 3g5g_A Regulatory protein; tra 89.7 0.69 2.4E-05 32.1 5.5 35 72-108 32-66 (99)
66 1rzs_A Antirepressor, regulato 89.6 0.37 1.3E-05 30.9 3.7 30 72-102 2-31 (61)
67 3f52_A CLP gene regulator (CLG 89.4 0.94 3.2E-05 31.4 6.0 43 72-116 32-74 (117)
68 3hh0_A Transcriptional regulat 89.3 0.93 3.2E-05 34.1 6.3 26 81-107 4-29 (146)
69 3gp4_A Transcriptional regulat 89.3 0.6 2.1E-05 35.0 5.2 26 81-107 2-27 (142)
70 2a6c_A Helix-turn-helix motif; 89.2 0.38 1.3E-05 31.8 3.6 30 73-102 23-52 (83)
71 3bd1_A CRO protein; transcript 89.1 0.54 1.8E-05 30.6 4.3 34 73-107 4-37 (79)
72 1xsv_A Hypothetical UPF0122 pr 88.7 0.94 3.2E-05 32.5 5.7 48 79-126 39-93 (113)
73 2hin_A GP39, repressor protein 88.6 0.67 2.3E-05 31.5 4.6 37 71-108 1-37 (71)
74 2ppx_A AGR_C_3184P, uncharacte 88.5 1.2 4.1E-05 30.3 5.9 35 71-107 33-67 (99)
75 2jpc_A SSRB; DNA binding prote 88.1 0.35 1.2E-05 29.9 2.7 23 80-102 12-34 (61)
76 1uxc_A FRUR (1-57), fructose r 87.9 0.37 1.3E-05 31.9 2.9 24 82-105 1-24 (65)
77 2jml_A DNA binding domain/tran 87.8 0.36 1.2E-05 32.5 2.8 27 81-107 5-31 (81)
78 1jhg_A Trp operon repressor; c 87.6 0.49 1.7E-05 34.5 3.6 22 82-103 59-80 (101)
79 2glo_A Brinker CG9653-PA; prot 87.5 0.39 1.3E-05 30.3 2.7 24 81-104 21-48 (59)
80 2ict_A Antitoxin HIGA; helix-t 87.4 0.6 2E-05 31.2 3.7 31 73-103 13-43 (94)
81 1q06_A Transcriptional regulat 87.4 1.1 3.8E-05 33.0 5.5 25 82-107 1-25 (135)
82 1ku3_A Sigma factor SIGA; heli 87.4 0.49 1.7E-05 30.7 3.2 22 81-102 30-51 (73)
83 2elh_A CG11849-PA, LD40883P; s 87.3 0.42 1.4E-05 32.5 2.9 24 81-104 38-61 (87)
84 3gbg_A TCP pilus virulence reg 87.3 0.76 2.6E-05 36.0 4.8 41 81-121 185-225 (276)
85 1y6u_A XIS, excisionase from t 87.3 0.52 1.8E-05 31.9 3.4 27 81-107 16-43 (70)
86 1je8_A Nitrate/nitrite respons 87.2 0.76 2.6E-05 30.8 4.2 24 79-102 34-57 (82)
87 3cec_A Putative antidote prote 86.6 1.7 5.7E-05 29.6 5.7 30 73-102 23-52 (104)
88 3kxa_A NGO0477 protein, putati 86.5 1.6 5.5E-05 32.3 6.0 35 71-107 71-105 (141)
89 1y9q_A Transcriptional regulat 86.1 1.6 5.6E-05 32.6 5.9 34 73-108 16-49 (192)
90 2auw_A Hypothetical protein NE 86.0 0.84 2.9E-05 36.0 4.4 96 23-127 44-146 (170)
91 3gpv_A Transcriptional regulat 85.8 1.3 4.3E-05 33.3 5.2 27 81-108 16-42 (148)
92 1rp3_A RNA polymerase sigma fa 85.8 1.5 5E-05 33.0 5.5 23 80-102 202-224 (239)
93 2pij_A Prophage PFL 6 CRO; tra 85.6 0.98 3.4E-05 28.2 3.8 31 72-103 5-35 (67)
94 3i4p_A Transcriptional regulat 85.6 0.64 2.2E-05 34.8 3.4 33 73-105 9-41 (162)
95 1neq_A DNA-binding protein NER 85.6 0.89 3.1E-05 30.5 3.8 35 69-103 7-44 (74)
96 1x3u_A Transcriptional regulat 85.6 0.79 2.7E-05 29.5 3.5 24 79-102 29-52 (79)
97 2jvl_A TRMBF1; coactivator, he 85.1 1.4 4.8E-05 30.7 4.9 33 73-107 39-73 (107)
98 3lfp_A CSP231I C protein; tran 85.1 2.3 7.7E-05 28.7 5.8 33 73-107 6-42 (98)
99 1tty_A Sigma-A, RNA polymerase 85.0 0.73 2.5E-05 31.1 3.2 22 81-102 38-59 (87)
100 1fse_A GERE; helix-turn-helix 85.0 0.7 2.4E-05 29.2 2.9 23 80-102 25-47 (74)
101 2bnm_A Epoxidase; oxidoreducta 84.6 1.8 6.1E-05 32.4 5.5 34 73-108 15-48 (198)
102 2lfw_A PHYR sigma-like domain; 84.6 0.49 1.7E-05 34.7 2.3 24 79-102 107-130 (157)
103 1pdn_C Protein (PRD paired); p 84.4 0.71 2.4E-05 31.5 2.9 25 81-105 33-57 (128)
104 2eby_A Putative HTH-type trans 84.3 1.9 6.5E-05 29.6 5.2 27 76-102 19-45 (113)
105 1u78_A TC3 transposase, transp 84.0 0.68 2.3E-05 32.5 2.8 25 81-105 22-46 (141)
106 1zx4_A P1 PARB, plasmid partit 84.0 2.8 9.4E-05 33.6 6.6 25 80-104 23-47 (192)
107 1z4h_A TORI, TOR inhibition pr 83.9 0.6 2.1E-05 30.3 2.3 26 82-107 11-36 (66)
108 1qgp_A Protein (double strande 83.9 0.99 3.4E-05 30.5 3.5 24 81-104 31-54 (77)
109 2o38_A Hypothetical protein; a 83.8 2 6.9E-05 31.0 5.3 34 72-107 44-77 (120)
110 2p5v_A Transcriptional regulat 83.4 1.1 3.7E-05 33.1 3.8 33 73-105 16-48 (162)
111 1qbj_A Protein (double-strande 83.2 1.3 4.4E-05 30.6 3.9 30 74-103 17-49 (81)
112 3trb_A Virulence-associated pr 83.2 3 0.0001 29.3 5.9 31 75-107 21-51 (104)
113 4ghj_A Probable transcriptiona 83.1 1.1 3.9E-05 31.7 3.6 33 73-107 41-73 (101)
114 1d5y_A ROB transcription facto 82.7 1.1 3.7E-05 35.4 3.7 51 76-126 12-65 (292)
115 2wus_R RODZ, putative uncharac 82.5 1.3 4.6E-05 31.7 3.9 33 73-107 12-44 (112)
116 2ia0_A Putative HTH-type trans 82.1 1.3 4.3E-05 33.7 3.8 33 73-105 23-55 (171)
117 2e1c_A Putative HTH-type trans 82.1 1.3 4.4E-05 33.7 3.8 33 73-105 33-65 (171)
118 2cyy_A Putative HTH-type trans 81.9 1.4 4.8E-05 32.2 3.8 32 74-105 14-45 (151)
119 3ulq_B Transcriptional regulat 81.8 1.3 4.5E-05 30.5 3.5 42 66-107 25-74 (90)
120 3r8n_M 30S ribosomal protein S 81.7 2.7 9.4E-05 31.1 5.4 59 89-149 20-81 (114)
121 2l8n_A Transcriptional repress 81.7 3.1 0.00011 27.5 5.2 22 82-103 10-31 (67)
122 3uj3_X DNA-invertase; helix-tu 81.5 0.29 1E-05 37.4 0.0 34 81-114 158-191 (193)
123 4fe7_A Xylose operon regulator 81.5 1.9 6.6E-05 35.8 5.0 46 81-126 321-367 (412)
124 2pn6_A ST1022, 150AA long hypo 81.2 1.3 4.4E-05 32.1 3.4 32 74-105 10-41 (150)
125 2dbb_A Putative HTH-type trans 80.8 1.8 6.1E-05 31.4 4.1 31 74-104 16-46 (151)
126 2q1z_A RPOE, ECF SIGE; ECF sig 80.5 0.39 1.3E-05 35.1 0.4 24 79-102 149-172 (184)
127 1i1g_A Transcriptional regulat 80.0 1.8 6.1E-05 30.8 3.8 31 75-105 12-42 (141)
128 3neu_A LIN1836 protein; struct 79.6 1.2 4.2E-05 32.1 2.8 25 81-105 36-61 (125)
129 2rn7_A IS629 ORFA; helix, all 79.3 0.79 2.7E-05 31.7 1.6 24 82-105 31-54 (108)
130 2jt1_A PEFI protein; solution 79.0 1.8 6.3E-05 29.6 3.4 22 80-101 23-44 (77)
131 3nrv_A Putative transcriptiona 79.0 9.1 0.00031 26.7 7.3 84 70-153 37-147 (148)
132 1k78_A Paired box protein PAX5 78.9 1.4 4.7E-05 31.8 2.9 25 81-105 48-72 (149)
133 2ovg_A Phage lambda CRO; trans 78.9 1.7 6E-05 28.8 3.2 31 71-103 5-35 (66)
134 2cg4_A Regulatory protein ASNC 78.8 2 7E-05 31.2 3.8 31 75-105 16-46 (152)
135 2cfx_A HTH-type transcriptiona 78.7 2 7E-05 31.1 3.8 31 75-105 13-43 (144)
136 2hsg_A Glucose-resistance amyl 78.6 3.7 0.00013 32.5 5.6 24 82-105 3-26 (332)
137 2rnj_A Response regulator prot 78.3 1.1 3.8E-05 30.2 2.1 24 79-102 42-65 (91)
138 1qpz_A PURA, protein (purine n 77.7 4.2 0.00014 32.3 5.7 23 83-105 2-24 (340)
139 2p5k_A Arginine repressor; DNA 77.6 3.4 0.00012 25.5 4.1 31 77-107 15-50 (64)
140 3fym_A Putative uncharacterize 77.3 2.2 7.6E-05 30.9 3.6 33 73-107 8-40 (130)
141 1u8b_A ADA polyprotein; protei 77.2 1.7 5.8E-05 31.0 3.0 28 81-108 93-121 (133)
142 2lhr_A Iron-regulated surface 77.2 3.2 0.00011 29.0 4.2 44 111-154 18-61 (78)
143 2htj_A P fimbrial regulatory p 77.1 2.9 9.8E-05 27.5 3.9 24 81-104 14-37 (81)
144 3kor_A Possible Trp repressor; 77.1 2 6.8E-05 32.3 3.4 35 81-115 75-109 (119)
145 2ofy_A Putative XRE-family tra 76.7 5.2 0.00018 25.8 5.0 24 83-108 29-52 (86)
146 2w7n_A TRFB transcriptional re 75.5 2.1 7.3E-05 31.0 3.1 27 75-101 26-54 (101)
147 2r0q_C Putative transposon TN5 75.4 1.7 5.9E-05 33.5 2.7 28 81-108 175-202 (209)
148 3rqi_A Response regulator prot 74.9 2.3 7.9E-05 31.0 3.2 30 79-108 154-183 (184)
149 2w25_A Probable transcriptiona 74.9 3 0.0001 30.2 3.8 31 75-105 15-45 (150)
150 3frw_A Putative Trp repressor 74.8 1.9 6.6E-05 31.9 2.7 34 81-114 58-91 (107)
151 2heo_A Z-DNA binding protein 1 74.7 3.1 0.00011 27.0 3.5 23 82-104 26-48 (67)
152 2k27_A Paired box protein PAX- 74.6 1.4 4.9E-05 32.2 2.0 25 81-105 41-65 (159)
153 1p4w_A RCSB; solution structur 74.6 2.4 8.1E-05 29.9 3.1 28 80-107 48-79 (99)
154 3kjx_A Transcriptional regulat 74.5 4.7 0.00016 32.1 5.2 22 82-103 11-32 (344)
155 1u78_A TC3 transposase, transp 74.3 3 0.0001 29.1 3.6 27 81-107 77-105 (141)
156 2p5t_A Putative transcriptiona 74.3 0.64 2.2E-05 34.4 0.0 34 73-108 6-39 (158)
157 1xsv_A Hypothetical UPF0122 pr 73.1 14 0.00049 26.1 7.0 13 97-109 43-55 (113)
158 1gdt_A GD resolvase, protein ( 72.2 2.5 8.5E-05 31.8 2.9 32 73-104 148-181 (183)
159 1sfx_A Conserved hypothetical 72.1 4.5 0.00015 26.5 3.9 28 78-105 31-58 (109)
160 2d1h_A ST1889, 109AA long hypo 71.9 2.4 8.1E-05 28.0 2.4 25 81-105 36-60 (109)
161 2kfs_A Conserved hypothetical 71.6 2.4 8.2E-05 33.0 2.7 27 81-107 31-57 (148)
162 3h5t_A Transcriptional regulat 71.0 4.1 0.00014 32.8 4.1 23 82-104 10-32 (366)
163 2guz_B Mitochondrial import in 70.8 4.1 0.00014 27.1 3.4 15 82-96 1-15 (65)
164 1hlv_A CENP-B, major centromer 70.7 4.4 0.00015 28.4 3.8 23 82-104 26-48 (131)
165 2cob_A LCOR protein; MLR2, KIA 70.6 5.9 0.0002 27.3 4.2 55 62-116 5-67 (70)
166 2y75_A HTH-type transcriptiona 70.3 5.3 0.00018 28.3 4.1 25 81-105 26-50 (129)
167 3hot_A Transposable element ma 70.1 5.3 0.00018 32.1 4.6 31 78-108 83-113 (345)
168 3kp7_A Transcriptional regulat 69.9 25 0.00086 24.5 7.7 77 78-154 48-147 (151)
169 3s2w_A Transcriptional regulat 69.8 17 0.00058 25.8 6.8 74 81-154 64-158 (159)
170 2l0k_A Stage III sporulation p 69.7 4.4 0.00015 28.7 3.6 23 81-103 20-42 (93)
171 3ihu_A Transcriptional regulat 69.6 2.5 8.6E-05 32.6 2.5 25 81-105 39-63 (222)
172 2l1p_A DNA-binding protein SAT 69.4 9.1 0.00031 27.2 5.1 43 72-116 25-67 (83)
173 1hqc_A RUVB; extended AAA-ATPa 69.2 2.9 9.9E-05 33.0 2.8 25 83-107 266-290 (324)
174 3tgn_A ADC operon repressor AD 68.7 16 0.00056 25.1 6.4 30 82-111 52-85 (146)
175 3cec_A Putative antidote prote 68.3 5.7 0.00019 26.8 3.8 43 66-108 27-73 (104)
176 2ao9_A Phage protein; structur 68.2 3.7 0.00013 31.8 3.1 23 81-103 48-70 (155)
177 1xn7_A Hypothetical protein YH 68.1 6.6 0.00023 26.8 4.1 30 72-101 3-36 (78)
178 3r1f_A ESX-1 secretion-associa 67.8 27 0.00094 25.5 7.8 14 95-108 61-74 (135)
179 1q1h_A TFE, transcription fact 67.5 3.8 0.00013 28.1 2.8 25 81-105 33-57 (110)
180 1oyi_A Double-stranded RNA-bin 67.4 3.5 0.00012 28.9 2.6 24 80-103 29-52 (82)
181 3szt_A QCSR, quorum-sensing co 66.9 4.6 0.00016 31.6 3.5 40 68-107 173-220 (237)
182 3hhg_A Transcriptional regulat 66.7 6.4 0.00022 29.9 4.2 31 71-101 3-37 (306)
183 4hbl_A Transcriptional regulat 66.7 17 0.00058 25.6 6.2 74 81-154 55-146 (149)
184 3qkx_A Uncharacterized HTH-typ 66.5 3.6 0.00012 28.8 2.6 34 92-125 25-59 (188)
185 1ub9_A Hypothetical protein PH 66.3 5.7 0.0002 26.0 3.4 25 81-105 30-54 (100)
186 2b0l_A GTP-sensing transcripti 66.3 3.9 0.00013 28.8 2.7 23 83-105 45-67 (102)
187 3bdn_A Lambda repressor; repre 66.3 3.3 0.00011 31.8 2.5 30 73-102 22-51 (236)
188 2vqe_M 30S ribosomal protein S 66.3 7 0.00024 29.4 4.2 60 88-149 20-83 (126)
189 3b73_A PHIH1 repressor-like pr 66.1 5.4 0.00018 28.9 3.5 33 73-105 19-53 (111)
190 3cuo_A Uncharacterized HTH-typ 66.1 4.7 0.00016 26.5 2.9 25 81-105 38-62 (99)
191 3tqn_A Transcriptional regulat 65.9 4 0.00014 28.8 2.7 23 83-105 35-57 (113)
192 4ham_A LMO2241 protein; struct 65.6 4 0.00014 29.5 2.7 25 81-105 37-62 (134)
193 2ev1_A Hypothetical protein RV 65.6 4.1 0.00014 33.4 3.0 44 68-111 49-108 (222)
194 1l0o_C Sigma factor; bergerat 65.4 1.3 4.4E-05 33.1 0.0 23 80-102 213-235 (243)
195 3clo_A Transcriptional regulat 65.4 5.4 0.00018 31.5 3.6 24 79-102 210-233 (258)
196 1hw1_A FADR, fatty acid metabo 65.3 4 0.00014 31.4 2.8 25 81-105 30-55 (239)
197 1y0u_A Arsenical resistance op 65.1 4.9 0.00017 27.0 2.9 25 81-105 43-67 (96)
198 3fiw_A Putative TETR-family tr 65.1 7.4 0.00025 29.4 4.3 32 81-125 45-76 (211)
199 1nd9_A Translation initiation 65.0 2.9 0.0001 24.9 1.6 25 83-107 4-28 (49)
200 1ojl_A Transcriptional regulat 64.8 4 0.00014 33.2 2.8 24 79-102 279-302 (304)
201 3cjd_A Transcriptional regulat 64.8 3.2 0.00011 30.4 2.1 34 92-125 29-63 (198)
202 1s4k_A Putative cytoplasmic pr 64.8 19 0.00064 27.2 6.3 46 71-118 6-53 (120)
203 2hxi_A Putative transcriptiona 64.5 9.6 0.00033 29.5 4.9 34 66-99 24-67 (241)
204 3r0a_A Putative transcriptiona 64.4 3.9 0.00014 29.1 2.5 23 82-104 43-65 (123)
205 2fa5_A Transcriptional regulat 64.3 34 0.0012 24.0 8.0 89 68-156 44-159 (162)
206 3oop_A LIN2960 protein; protei 63.7 21 0.00073 24.6 6.2 71 80-150 50-141 (143)
207 2h8r_A Hepatocyte nuclear fact 63.5 5.5 0.00019 32.7 3.4 31 73-103 36-66 (221)
208 2og0_A Excisionase; protein-DN 63.5 4.1 0.00014 26.2 2.2 26 82-107 3-30 (52)
209 1on2_A Transcriptional regulat 63.5 8.1 0.00028 27.2 4.0 25 81-105 22-46 (142)
210 1v4r_A Transcriptional repress 63.2 4 0.00014 27.9 2.2 24 82-105 35-59 (102)
211 3by6_A Predicted transcription 63.1 4.3 0.00015 29.4 2.5 24 82-105 35-59 (126)
212 2ek5_A Predicted transcription 63.1 5.4 0.00018 29.0 3.0 25 81-105 27-52 (129)
213 1i3j_A I-TEVI, intron-associat 63.0 4.3 0.00015 30.1 2.5 35 71-111 76-110 (116)
214 2q0o_A Probable transcriptiona 62.7 6.2 0.00021 30.6 3.5 33 69-101 174-210 (236)
215 2x4h_A Hypothetical protein SS 62.3 5.5 0.00019 27.9 2.9 25 81-105 31-55 (139)
216 3bpv_A Transcriptional regulat 62.2 8.7 0.0003 26.3 3.9 76 78-153 40-136 (138)
217 3u5c_S 40S ribosomal protein S 62.1 12 0.0004 28.9 4.9 59 89-149 34-118 (146)
218 1lj9_A Transcriptional regulat 61.6 36 0.0012 23.3 7.3 74 81-154 43-137 (144)
219 1l3l_A Transcriptional activat 61.6 6.6 0.00023 30.4 3.4 33 69-101 172-208 (234)
220 2di3_A Bacterial regulatory pr 60.9 5.4 0.00018 31.0 2.8 25 81-105 27-52 (239)
221 3qq6_A HTH-type transcriptiona 60.5 5.8 0.0002 25.7 2.6 45 64-108 17-66 (78)
222 3sxy_A Transcriptional regulat 60.4 4.8 0.00017 30.8 2.5 25 81-105 35-59 (218)
223 2lkp_A Transcriptional regulat 60.1 10 0.00034 26.1 3.9 25 81-105 45-69 (119)
224 1au7_A Protein PIT-1, GHF-1; c 60.1 20 0.00069 26.7 5.8 96 5-101 1-134 (146)
225 3c7j_A Transcriptional regulat 60.0 5.7 0.00019 31.3 2.8 25 81-105 49-73 (237)
226 3fzv_A Probable transcriptiona 59.6 6.9 0.00024 29.7 3.2 32 70-101 3-38 (306)
227 3deu_A Transcriptional regulat 59.5 24 0.0008 25.6 6.0 88 67-154 47-162 (166)
228 2k02_A Ferrous iron transport 59.4 9.5 0.00033 26.7 3.6 31 72-102 3-37 (87)
229 1j1v_A Chromosomal replication 59.3 27 0.00094 24.3 6.1 28 77-104 42-70 (94)
230 4b8x_A SCO5413, possible MARR- 59.0 21 0.00073 25.5 5.6 82 68-149 30-139 (147)
231 1neq_A DNA-binding protein NER 58.9 15 0.00052 24.2 4.5 46 68-113 20-69 (74)
232 2nnn_A Probable transcriptiona 58.6 13 0.00043 25.4 4.2 36 70-105 35-76 (140)
233 3bro_A Transcriptional regulat 58.4 12 0.00039 25.7 3.9 25 81-105 50-74 (141)
234 3bs3_A Putative DNA-binding pr 58.0 19 0.00064 22.2 4.6 43 66-108 19-65 (76)
235 3szp_A Transcriptional regulat 57.6 9.3 0.00032 28.4 3.6 21 81-101 15-35 (291)
236 1b0n_A Protein (SINR protein); 57.5 39 0.0013 22.4 7.2 84 67-150 11-108 (111)
237 3bdd_A Regulatory protein MARR 57.3 12 0.00041 25.6 3.9 72 81-152 45-138 (142)
238 2h09_A Transcriptional regulat 57.3 12 0.0004 26.8 4.0 26 80-105 53-78 (155)
239 3jw4_A Transcriptional regulat 57.1 21 0.00073 24.8 5.3 81 69-149 37-146 (148)
240 4a0z_A Transcription factor FA 56.8 12 0.00042 29.2 4.2 38 73-110 18-55 (190)
241 2hr3_A Probable transcriptiona 56.7 14 0.00047 25.6 4.1 25 81-105 50-74 (147)
242 2a61_A Transcriptional regulat 56.6 12 0.00042 25.7 3.9 73 81-153 47-140 (145)
243 2jrt_A Uncharacterized protein 56.5 10 0.00035 26.8 3.4 35 71-105 37-73 (95)
244 3plo_X DNA-invertase; resolvas 56.5 2.3 7.9E-05 32.4 0.0 24 81-104 158-181 (193)
245 2fjr_A Repressor protein CI; g 56.3 13 0.00045 27.4 4.2 21 83-103 22-42 (189)
246 3eco_A MEPR; mutlidrug efflux 55.9 33 0.0011 23.4 6.0 70 81-150 47-137 (139)
247 2oqg_A Possible transcriptiona 55.8 14 0.00048 24.8 4.0 25 81-105 34-58 (114)
248 3o60_A LIN0861 protein; PSI, M 55.8 5.5 0.00019 29.4 2.0 34 92-125 37-71 (185)
249 3hug_A RNA polymerase sigma fa 55.6 8.5 0.00029 25.7 2.8 40 68-107 51-90 (92)
250 1u3e_M HNH homing endonuclease 54.9 7.7 0.00026 29.4 2.7 23 82-104 136-158 (174)
251 2pg4_A Uncharacterized protein 54.8 12 0.00041 24.9 3.4 23 81-103 30-53 (95)
252 1adr_A P22 C2 repressor; trans 54.7 24 0.00083 21.6 4.7 41 67-107 15-59 (76)
253 2fbh_A Transcriptional regulat 54.6 12 0.00042 25.6 3.6 72 81-152 52-144 (146)
254 2rdp_A Putative transcriptiona 54.1 14 0.00049 25.6 3.9 71 81-151 56-147 (150)
255 3k0l_A Repressor protein; heli 53.9 46 0.0016 23.6 6.7 85 68-152 41-152 (162)
256 3k2z_A LEXA repressor; winged 53.8 13 0.00046 28.1 4.0 26 80-105 23-48 (196)
257 3bqz_B HTH-type transcriptiona 53.5 16 0.00053 25.6 4.0 24 78-101 19-42 (194)
258 3fm5_A Transcriptional regulat 53.4 20 0.00068 25.1 4.6 38 68-105 34-78 (150)
259 2ewt_A BLDD, putative DNA-bind 53.4 22 0.00076 21.6 4.3 43 66-108 17-65 (71)
260 2hs5_A Putative transcriptiona 53.3 7.3 0.00025 30.6 2.5 25 81-105 51-75 (239)
261 1s3j_A YUSO protein; structura 53.2 11 0.00038 26.3 3.2 75 81-155 51-146 (155)
262 2a6c_A Helix-turn-helix motif; 53.0 24 0.00082 22.8 4.7 43 66-108 27-74 (83)
263 1jhf_A LEXA repressor; LEXA SO 52.9 15 0.0005 27.7 4.0 25 77-101 19-46 (202)
264 2fbi_A Probable transcriptiona 52.8 15 0.0005 25.1 3.7 25 81-105 50-74 (142)
265 1vz0_A PARB, chromosome partit 52.8 14 0.00047 29.5 4.0 29 79-107 132-160 (230)
266 2qvo_A Uncharacterized protein 52.8 9.7 0.00033 25.5 2.7 24 82-105 31-54 (95)
267 2eth_A Transcriptional regulat 52.7 17 0.00058 25.6 4.2 72 81-152 58-150 (154)
268 2xzm_M RPS18E; ribosome, trans 52.7 49 0.0017 25.6 7.0 62 88-149 33-118 (155)
269 4aik_A Transcriptional regulat 52.5 46 0.0016 23.9 6.6 73 82-154 47-140 (151)
270 1y7y_A C.AHDI; helix-turn-heli 52.3 23 0.00078 21.6 4.3 43 66-108 22-68 (74)
271 1ku9_A Hypothetical protein MJ 52.3 8.6 0.00029 26.4 2.4 25 81-105 41-65 (152)
272 1yio_A Response regulatory pro 52.2 13 0.00044 27.0 3.5 27 81-107 157-187 (208)
273 4ev0_A Transcription regulator 52.2 9.1 0.00031 27.9 2.7 25 80-104 162-186 (216)
274 3dv8_A Transcriptional regulat 52.1 10 0.00035 27.7 2.9 36 80-115 168-206 (220)
275 1wh7_A ZF-HD homeobox family p 52.0 40 0.0014 22.7 5.8 18 84-101 51-68 (80)
276 1pm6_A Excisionase; antiparall 52.0 9.8 0.00033 26.0 2.6 26 82-107 3-30 (72)
277 3cta_A Riboflavin kinase; stru 51.9 8.7 0.0003 29.8 2.7 24 82-105 28-51 (230)
278 3gzi_A Transcriptional regulat 51.7 12 0.00042 26.8 3.3 35 92-126 34-69 (218)
279 3lfp_A CSP231I C protein; tran 51.5 49 0.0017 21.8 6.5 75 67-145 11-93 (98)
280 2oa4_A SIR5; structure, struct 51.3 11 0.00038 27.3 3.0 33 73-105 40-74 (101)
281 3t76_A VANU, transcriptional r 51.2 22 0.00076 24.1 4.4 43 66-108 33-78 (88)
282 2b5a_A C.BCLI; helix-turn-heli 50.8 25 0.00086 21.6 4.3 42 67-108 20-65 (77)
283 4hku_A LMO2814 protein, TETR t 50.7 11 0.00037 26.9 2.8 20 79-98 25-44 (178)
284 3qp6_A CVIR transcriptional re 50.7 13 0.00043 29.9 3.5 38 70-107 197-242 (265)
285 2gqq_A Leucine-responsive regu 50.6 2.1 7.2E-05 31.7 -1.1 31 75-105 21-51 (163)
286 4ich_A Transcriptional regulat 50.6 3.3 0.00011 32.9 0.0 30 72-101 34-63 (311)
287 2oz6_A Virulence factor regula 50.4 10 0.00035 27.5 2.7 24 81-104 164-187 (207)
288 3ryp_A Catabolite gene activat 50.4 10 0.00034 27.6 2.6 25 81-105 167-191 (210)
289 1jgs_A Multiple antibiotic res 50.4 18 0.00062 24.7 3.9 25 81-105 48-72 (138)
290 3j20_O 30S ribosomal protein S 50.3 20 0.00068 27.6 4.4 22 88-109 26-47 (148)
291 3vp5_A Transcriptional regulat 50.3 9.6 0.00033 27.5 2.5 33 92-124 29-62 (189)
292 3f6w_A XRE-family like protein 50.2 27 0.00093 22.0 4.5 43 66-108 23-69 (83)
293 3jth_A Transcription activator 50.1 10 0.00034 25.3 2.4 24 81-104 36-59 (98)
294 3omt_A Uncharacterized protein 50.1 30 0.001 21.4 4.6 43 66-108 17-63 (73)
295 3hsr_A HTH-type transcriptiona 50.1 28 0.00095 24.1 4.9 25 81-105 50-74 (140)
296 3isp_A HTH-type transcriptiona 50.1 11 0.00038 28.7 3.0 32 70-101 5-40 (303)
297 2zcm_A Biofilm operon icaabcd 50.0 17 0.00058 25.7 3.8 23 78-100 24-46 (192)
298 3npi_A TETR family regulatory 49.9 22 0.00076 26.6 4.6 24 78-101 35-58 (251)
299 2gxg_A 146AA long hypothetical 49.7 58 0.002 22.1 7.8 74 81-154 50-144 (146)
300 3f1b_A TETR-like transcription 49.7 11 0.00036 26.6 2.6 23 78-100 31-53 (203)
301 3dew_A Transcriptional regulat 49.6 17 0.00059 25.4 3.7 23 78-100 25-47 (206)
302 3b7h_A Prophage LP1 protein 11 49.6 29 0.00098 21.4 4.5 43 66-108 16-63 (78)
303 2fmy_A COOA, carbon monoxide o 49.4 12 0.00042 27.5 3.1 25 80-104 166-190 (220)
304 1j5y_A Transcriptional regulat 49.4 16 0.00055 27.6 3.8 22 82-103 37-58 (187)
305 1sfu_A 34L protein; protein/Z- 49.3 16 0.00056 25.3 3.4 33 89-127 22-55 (75)
306 3cjn_A Transcriptional regulat 49.2 15 0.00051 26.0 3.4 83 69-151 48-157 (162)
307 2fu4_A Ferric uptake regulatio 49.2 17 0.00059 23.4 3.4 23 80-102 32-59 (83)
308 1ic8_A Hepatocyte nuclear fact 49.2 15 0.00051 29.2 3.6 30 73-102 35-64 (194)
309 1ixc_A CBNR, LYSR-type regulat 49.1 10 0.00036 28.5 2.6 21 81-101 15-35 (294)
310 2d6y_A Putative TETR family re 49.0 11 0.00039 27.3 2.8 23 78-100 25-47 (202)
311 2pz9_A Putative regulatory pro 49.0 21 0.00071 26.3 4.3 24 78-101 47-70 (226)
312 1pb6_A Hypothetical transcript 49.0 11 0.00038 26.8 2.7 23 78-100 35-57 (212)
313 2lw1_A ABC transporter ATP-bin 48.9 45 0.0015 22.8 5.7 42 113-154 29-75 (89)
314 3bja_A Transcriptional regulat 48.9 13 0.00045 25.3 2.9 70 81-150 47-137 (139)
315 2qww_A Transcriptional regulat 48.8 15 0.00052 25.7 3.3 72 81-152 55-151 (154)
316 3h5o_A Transcriptional regulat 48.5 3.7 0.00013 32.7 0.0 22 82-103 5-26 (339)
317 3kz3_A Repressor protein CI; f 48.4 23 0.0008 22.5 4.0 43 66-108 21-67 (80)
318 1uxc_A FRUR (1-57), fructose r 48.2 30 0.001 22.4 4.5 48 71-118 1-59 (65)
319 2dk5_A DNA-directed RNA polyme 48.1 12 0.00042 25.9 2.7 40 66-105 13-60 (91)
320 3dkw_A DNR protein; CRP-FNR, H 48.1 12 0.00041 27.5 2.8 24 81-104 178-201 (227)
321 3g3z_A NMB1585, transcriptiona 48.0 20 0.0007 24.8 3.9 73 81-153 45-138 (145)
322 3b02_A Transcriptional regulat 48.0 12 0.00041 27.2 2.7 25 80-104 138-162 (195)
323 4aci_A HTH-type transcriptiona 47.7 17 0.00058 25.5 3.4 24 78-101 31-54 (191)
324 3kkc_A TETR family transcripti 47.4 7.5 0.00026 27.1 1.5 33 92-124 29-62 (177)
325 3pxp_A Helix-turn-helix domain 47.3 27 0.00091 29.1 5.1 30 80-111 24-53 (292)
326 3dcf_A Transcriptional regulat 47.3 12 0.0004 26.8 2.5 22 79-100 49-70 (218)
327 1ft9_A Carbon monoxide oxidati 47.3 14 0.00046 27.4 3.0 34 81-114 163-199 (222)
328 2da3_A Alpha-fetoprotein enhan 47.2 55 0.0019 21.2 5.9 33 69-101 25-64 (80)
329 3bj6_A Transcriptional regulat 47.2 17 0.00057 25.3 3.3 74 81-154 54-148 (152)
330 1zk8_A Transcriptional regulat 47.2 7.7 0.00026 27.3 1.5 21 79-99 26-46 (183)
331 2pex_A Transcriptional regulat 47.1 17 0.00058 25.4 3.4 38 68-105 42-85 (153)
332 3lwj_A Putative TETR-family tr 47.1 18 0.0006 25.6 3.5 22 79-100 30-51 (202)
333 3e97_A Transcriptional regulat 47.0 13 0.00046 27.5 2.9 36 81-116 175-213 (231)
334 2jj7_A Hemolysin II regulatory 46.9 18 0.00061 25.4 3.5 23 78-100 24-46 (186)
335 1r1u_A CZRA, repressor protein 46.9 14 0.00047 25.2 2.7 24 81-104 39-62 (106)
336 1ylf_A RRF2 family protein; st 46.9 13 0.00045 27.2 2.8 24 82-105 31-54 (149)
337 3he0_A Transcriptional regulat 46.9 9.7 0.00033 26.8 2.0 21 79-99 29-49 (196)
338 3s8q_A R-M controller protein; 46.8 29 0.00099 21.9 4.2 43 66-108 20-66 (82)
339 1xwr_A Regulatory protein CII; 46.8 16 0.00055 26.1 3.2 28 74-101 16-43 (97)
340 2gau_A Transcriptional regulat 46.7 16 0.00054 27.1 3.3 24 80-103 179-202 (232)
341 3fxq_A LYSR type regulator of 46.7 13 0.00045 28.4 2.9 21 81-101 16-36 (305)
342 3iz6_M 40S ribosomal protein S 46.7 29 0.001 26.8 4.9 60 88-149 31-116 (152)
343 2rek_A Putative TETR-family tr 46.5 12 0.00041 26.7 2.5 23 78-101 33-55 (199)
344 2zcw_A TTHA1359, transcription 46.4 13 0.00043 27.2 2.6 36 80-115 145-183 (202)
345 3ppb_A Putative TETR family tr 46.2 13 0.00044 25.9 2.6 19 81-99 29-47 (195)
346 1z6r_A MLC protein; transcript 46.1 18 0.00063 30.1 3.9 33 73-105 22-54 (406)
347 2wte_A CSA3; antiviral protein 45.9 19 0.00065 29.0 3.9 25 81-105 166-190 (244)
348 3d5a_X RF1, peptide chain rele 45.9 38 0.0013 29.5 6.0 42 112-155 48-89 (354)
349 2esn_A Probable transcriptiona 45.8 12 0.00042 28.5 2.6 31 71-101 10-44 (310)
350 2hoe_A N-acetylglucosamine kin 45.8 21 0.00072 29.6 4.2 36 69-105 22-57 (380)
351 2wiu_B HTH-type transcriptiona 45.8 21 0.00073 22.6 3.5 43 66-108 21-67 (88)
352 1l9z_H Sigma factor SIGA; heli 45.5 30 0.001 30.6 5.3 22 81-102 395-416 (438)
353 1z05_A Transcriptional regulat 45.4 18 0.00063 30.5 3.9 33 73-105 45-77 (429)
354 3ech_A MEXR, multidrug resista 45.3 30 0.001 23.9 4.4 37 69-105 33-75 (142)
355 2w48_A Sorbitol operon regulat 45.3 22 0.00075 29.0 4.2 28 81-108 21-51 (315)
356 3cdh_A Transcriptional regulat 45.2 18 0.00063 25.3 3.3 25 81-105 57-81 (155)
357 2g7g_A RHA04620, putative tran 45.2 19 0.00064 27.0 3.5 19 81-99 29-47 (213)
358 2qtq_A Transcriptional regulat 45.0 20 0.00068 25.4 3.5 24 78-101 33-56 (213)
359 2dg6_A Putative transcriptiona 45.0 17 0.00059 29.2 3.4 25 82-107 1-25 (222)
360 3iwz_A CAP-like, catabolite ac 45.0 14 0.00046 27.3 2.6 24 81-104 187-210 (230)
361 2p2u_A HOST-nuclease inhibitor 44.8 19 0.00065 27.8 3.6 49 110-158 20-68 (171)
362 3e6c_C CPRK, cyclic nucleotide 44.8 15 0.00052 27.7 3.0 37 80-116 176-215 (250)
363 3dbi_A Sugar-binding transcrip 44.7 4.6 0.00016 32.0 0.0 21 82-102 4-24 (338)
364 1uly_A Hypothetical protein PH 44.5 14 0.00047 28.6 2.7 24 81-104 33-56 (192)
365 3c3w_A Two component transcrip 44.3 20 0.00068 26.8 3.5 27 81-107 164-194 (225)
366 3la7_A Global nitrogen regulat 44.2 16 0.00054 27.7 3.0 25 80-104 192-216 (243)
367 3c2b_A Transcriptional regulat 44.2 24 0.00081 25.4 3.8 23 78-100 32-54 (221)
368 1hmj_A RPB5, protein (subunit 43.9 8.7 0.0003 26.9 1.3 34 5-38 16-49 (78)
369 3eus_A DNA-binding protein; st 43.9 31 0.001 22.5 4.1 42 66-107 23-68 (86)
370 3trb_A Virulence-associated pr 43.6 36 0.0012 23.6 4.6 43 66-108 23-69 (104)
371 3geu_A Intercellular adhesion 43.5 12 0.00043 26.3 2.2 22 78-99 20-41 (189)
372 2eby_A Putative HTH-type trans 43.5 42 0.0015 22.6 4.9 43 66-108 20-66 (113)
373 3frq_A Repressor protein MPHR( 43.4 21 0.00072 25.3 3.4 24 78-101 25-48 (195)
374 1u2w_A CADC repressor, cadmium 43.4 21 0.00071 25.1 3.3 25 81-105 56-80 (122)
375 3n0r_A Response regulator; sig 43.4 20 0.00068 28.8 3.6 27 76-102 122-148 (286)
376 2da4_A Hypothetical protein DK 43.4 15 0.0005 24.3 2.4 29 73-101 20-59 (80)
377 3d0s_A Transcriptional regulat 43.1 17 0.00059 26.8 3.0 34 81-114 177-213 (227)
378 3v47_C Flagellin; innate immun 43.0 41 0.0014 30.0 5.8 24 132-155 63-86 (425)
379 3g5g_A Regulatory protein; tra 42.9 33 0.0011 23.3 4.2 43 66-108 37-83 (99)
380 3mky_B Protein SOPB; partition 42.9 98 0.0033 24.7 7.5 34 76-109 37-70 (189)
381 2o20_A Catabolite control prot 42.7 5.2 0.00018 31.7 0.0 22 82-103 6-27 (332)
382 3ctp_A Periplasmic binding pro 42.6 5.2 0.00018 31.7 0.0 22 83-104 4-25 (330)
383 2g7l_A TETR-family transcripti 42.6 23 0.00079 27.4 3.8 45 68-125 16-70 (243)
384 2bv6_A MGRA, HTH-type transcri 42.6 17 0.00059 25.0 2.8 25 81-105 51-75 (142)
385 2hyt_A TETR-family transcripti 42.5 23 0.0008 25.3 3.6 33 80-125 31-63 (197)
386 1io1_A Phase 1 flagellin; beta 42.5 43 0.0015 29.0 5.8 25 132-156 51-75 (398)
387 3jvd_A Transcriptional regulat 42.4 5.3 0.00018 31.9 0.0 21 82-102 7-27 (333)
388 3e3m_A Transcriptional regulat 42.4 5.3 0.00018 32.1 0.0 20 82-101 13-32 (355)
389 1z91_A Organic hydroperoxide r 42.0 21 0.00073 24.6 3.2 82 69-151 36-143 (147)
390 2dg8_A Putative TETR-family tr 41.9 17 0.00057 26.0 2.7 21 79-99 27-47 (193)
391 2nyx_A Probable transcriptiona 41.9 23 0.00079 25.5 3.5 84 69-152 41-151 (168)
392 3bil_A Probable LACI-family tr 41.7 5.5 0.00019 32.0 0.0 22 82-103 9-30 (348)
393 3vk0_A NHTF, transcriptional r 41.6 35 0.0012 23.3 4.2 43 66-108 30-76 (114)
394 2kpj_A SOS-response transcript 41.6 50 0.0017 21.6 4.9 43 66-108 18-64 (94)
395 3pqk_A Biofilm growth-associat 41.6 17 0.00058 24.4 2.5 25 81-105 36-60 (102)
396 2kko_A Possible transcriptiona 41.6 15 0.00052 25.3 2.3 24 81-104 38-61 (108)
397 3kkc_A TETR family transcripti 41.5 14 0.00047 25.7 2.1 24 78-101 29-52 (177)
398 1jye_A Lactose operon represso 41.5 5.5 0.00019 31.9 0.0 22 82-103 4-25 (349)
399 1sfu_A 34L protein; protein/Z- 41.4 17 0.00059 25.1 2.5 21 82-102 30-50 (75)
400 2wv0_A YVOA, HTH-type transcri 41.4 17 0.00057 28.8 2.8 25 81-105 33-58 (243)
401 2oi8_A Putative regulatory pro 41.2 14 0.00046 27.6 2.2 32 81-125 36-67 (216)
402 2frh_A SARA, staphylococcal ac 41.2 18 0.00061 25.2 2.7 25 81-105 53-77 (127)
403 3cwr_A Transcriptional regulat 41.2 15 0.00051 25.9 2.3 24 78-101 34-57 (208)
404 2ijl_A AGR_C_4647P, molybdenum 41.1 19 0.00066 26.7 3.0 32 70-101 23-58 (135)
405 1ytz_T Troponin T; muscle, THI 41.0 69 0.0024 23.3 5.9 51 92-157 41-91 (107)
406 1y9q_A Transcriptional regulat 40.9 34 0.0012 25.2 4.3 43 66-108 20-66 (192)
407 2ict_A Antitoxin HIGA; helix-t 40.9 49 0.0017 21.5 4.7 43 66-108 17-63 (94)
408 2i10_A Putative TETR transcrip 40.8 30 0.001 25.0 3.9 23 78-100 28-50 (202)
409 1r71_A Transcriptional repress 40.8 32 0.0011 26.7 4.3 27 81-107 52-78 (178)
410 3bhq_A Transcriptional regulat 40.8 27 0.00092 25.2 3.7 23 78-100 29-51 (211)
411 3rd3_A Probable transcriptiona 40.7 15 0.0005 25.7 2.2 23 78-100 27-49 (197)
412 3v6g_A Probable transcriptiona 40.7 26 0.00088 25.9 3.6 23 78-100 31-53 (208)
413 3bwg_A Uncharacterized HTH-typ 40.7 19 0.00067 28.2 3.1 25 81-105 28-53 (239)
414 3k69_A Putative transcription 40.6 15 0.00051 27.7 2.3 24 82-105 29-52 (162)
415 1t33_A Putative transcriptiona 40.6 33 0.0011 24.6 4.2 21 78-99 29-49 (224)
416 3lxr_F IPGB2; RHOA, GTPase, GE 40.5 48 0.0017 26.8 5.4 43 118-160 79-146 (192)
417 1tbx_A ORF F-93, hypothetical 40.5 24 0.00082 23.3 3.2 25 81-105 22-50 (99)
418 2qtq_A Transcriptional regulat 40.4 19 0.00065 25.5 2.8 42 84-125 21-67 (213)
419 2np5_A Transcriptional regulat 40.4 25 0.00085 25.4 3.4 23 78-100 26-48 (203)
420 1r1t_A Transcriptional repress 40.2 20 0.00069 25.4 2.9 25 81-105 59-83 (122)
421 2xpw_A Tetracycline repressor 40.2 21 0.0007 26.8 3.1 23 78-100 20-42 (207)
422 1rr7_A Middle operon regulator 40.2 24 0.00083 26.0 3.4 28 78-105 89-116 (129)
423 3ic7_A Putative transcriptiona 40.2 4 0.00014 29.4 -1.0 24 82-105 35-59 (126)
424 1zbt_A RF-1, peptide chain rel 40.1 37 0.0012 29.8 5.0 61 88-155 45-107 (371)
425 1x57_A Endothelial differentia 40.1 32 0.0011 22.3 3.7 43 66-108 22-68 (91)
426 2o7t_A Transcriptional regulat 40.0 24 0.00083 25.1 3.3 22 79-100 26-47 (199)
427 2qwt_A Transcriptional regulat 39.8 18 0.0006 26.1 2.5 22 78-100 30-51 (196)
428 3qwg_A ESX-1 secretion-associa 39.8 80 0.0027 22.6 6.1 25 81-107 24-53 (123)
429 3f1b_A TETR-like transcription 39.7 18 0.00062 25.4 2.6 42 84-125 19-65 (203)
430 3t8r_A Staphylococcus aureus C 39.7 18 0.00061 26.5 2.6 24 82-105 29-52 (143)
431 3qkx_A Uncharacterized HTH-typ 39.7 15 0.0005 25.5 2.0 24 78-101 25-48 (188)
432 3mnl_A KSTR, transcriptional r 39.5 23 0.00078 25.0 3.0 24 78-101 37-60 (203)
433 2elu_A Zinc finger protein 406 39.4 6 0.00021 24.0 -0.1 15 1-15 14-28 (37)
434 1zk8_A Transcriptional regulat 39.4 17 0.00057 25.5 2.3 42 84-125 13-59 (183)
435 2bnm_A Epoxidase; oxidoreducta 39.4 37 0.0013 25.0 4.3 43 66-108 19-66 (198)
436 1zyb_A Transcription regulator 39.4 18 0.00063 27.0 2.7 23 81-103 186-208 (232)
437 2qko_A Possible transcriptiona 39.2 33 0.0011 24.7 3.9 35 92-126 45-80 (215)
438 3bru_A Regulatory protein, TET 39.0 25 0.00086 25.2 3.3 23 78-100 47-69 (222)
439 1a04_A Nitrate/nitrite respons 39.0 27 0.00091 25.5 3.4 21 81-101 169-189 (215)
440 4dyq_A Gene 1 protein; GP1, oc 39.0 25 0.00085 25.7 3.3 25 81-105 28-53 (140)
441 3kz9_A SMCR; transcriptional r 38.9 17 0.00058 25.5 2.3 21 79-99 35-55 (206)
442 3nnr_A Transcriptional regulat 38.9 16 0.00053 26.8 2.1 23 78-100 22-44 (228)
443 3u3w_A Transcriptional activat 38.9 60 0.002 24.6 5.6 28 73-101 10-37 (293)
444 4fx0_A Probable transcriptiona 38.9 20 0.00069 25.8 2.7 24 82-105 53-76 (148)
445 3vpr_A Transcriptional regulat 38.8 16 0.00055 25.9 2.2 22 78-99 20-41 (190)
446 1bb1_B Designed, thermostable 38.7 42 0.0014 20.0 3.6 22 134-155 8-29 (36)
447 3edp_A LIN2111 protein; APC883 38.7 21 0.00071 28.1 3.0 25 81-105 32-57 (236)
448 3e6m_A MARR family transcripti 38.7 27 0.00094 24.8 3.4 83 69-151 49-158 (161)
449 2g7s_A Transcriptional regulat 38.7 18 0.0006 25.2 2.3 24 78-101 25-48 (194)
450 1mkm_A ICLR transcriptional re 38.7 31 0.0011 27.0 4.0 25 81-105 23-47 (249)
451 3boq_A Transcriptional regulat 38.5 13 0.00046 26.1 1.7 69 81-149 62-151 (160)
452 3knw_A Putative transcriptiona 38.3 19 0.00064 25.6 2.5 24 78-101 31-54 (212)
453 3nxc_A HTH-type protein SLMA; 38.3 14 0.00049 26.2 1.8 22 78-99 42-63 (212)
454 3lhq_A Acrab operon repressor 38.2 19 0.00065 25.5 2.5 24 78-101 31-54 (220)
455 3egq_A TETR family transcripti 38.2 17 0.00058 25.2 2.2 22 79-100 22-43 (170)
456 2zkz_A Transcriptional repress 38.0 31 0.0011 23.3 3.4 26 81-106 41-66 (99)
457 1wh5_A ZF-HD homeobox family p 38.0 21 0.00071 24.0 2.5 18 84-101 51-68 (80)
458 3ewt_E Tumor necrosis factor r 38.0 19 0.00066 20.1 1.9 23 83-107 3-25 (25)
459 2obp_A Putative DNA-binding pr 37.9 24 0.00083 25.0 3.0 25 81-105 36-60 (96)
460 3ccy_A Putative TETR-family tr 37.8 24 0.00083 25.2 3.0 42 84-125 19-65 (203)
461 2oer_A Probable transcriptiona 37.6 28 0.00096 25.3 3.4 24 78-101 41-64 (214)
462 2fq4_A Transcriptional regulat 37.6 18 0.00061 25.9 2.3 23 78-100 29-51 (192)
463 3f3x_A Transcriptional regulat 37.6 29 0.00099 23.9 3.3 23 83-105 52-74 (144)
464 3col_A Putative transcription 37.5 19 0.00065 25.1 2.3 23 78-100 27-49 (196)
465 2qwt_A Transcriptional regulat 37.4 20 0.0007 25.7 2.6 42 84-126 18-64 (196)
466 2v57_A TETR family transcripti 37.4 29 0.00099 24.2 3.3 22 80-101 31-52 (190)
467 2hxo_A Putative TETR-family tr 37.4 24 0.00082 27.1 3.1 35 64-98 9-53 (237)
468 2xdn_A HTH-type transcriptiona 37.4 26 0.00089 25.2 3.1 42 84-125 16-62 (210)
469 2k9l_A RNA polymerase sigma fa 37.3 26 0.0009 23.3 2.9 24 78-101 45-68 (76)
470 3hta_A EBRA repressor; TETR fa 37.3 31 0.0011 25.3 3.6 23 78-100 45-67 (217)
471 2q24_A Putative TETR family tr 37.3 20 0.00069 25.4 2.5 20 81-100 34-53 (194)
472 4hku_A LMO2814 protein, TETR t 37.2 19 0.00064 25.6 2.3 42 84-125 12-58 (178)
473 2vpr_A Tetracycline resistance 37.1 20 0.00068 27.0 2.5 22 78-99 21-42 (207)
474 3on4_A Transcriptional regulat 37.1 22 0.00074 24.7 2.6 24 78-101 27-50 (191)
475 3nqo_A MARR-family transcripti 37.0 23 0.00078 26.3 2.8 70 81-150 57-147 (189)
476 3zym_A Phosphatidylinositol-bi 37.0 16 0.00056 30.7 2.2 35 75-109 225-268 (310)
477 3klo_A Transcriptional regulat 37.0 24 0.00081 26.2 2.9 27 81-107 174-204 (225)
478 2lf0_A Uncharacterized protein 36.8 35 0.0012 25.8 3.8 42 115-156 12-57 (123)
479 3jsj_A Putative TETR-family tr 36.8 29 0.001 24.3 3.3 19 82-100 29-47 (190)
480 3b81_A Transcriptional regulat 36.7 18 0.00063 25.4 2.2 23 78-100 28-50 (203)
481 3pas_A TETR family transcripti 36.7 19 0.00064 25.0 2.2 24 78-101 25-48 (195)
482 3loc_A HTH-type transcriptiona 36.7 16 0.00056 25.8 1.9 24 78-101 35-58 (212)
483 3eup_A Transcriptional regulat 36.7 16 0.00056 25.7 1.9 23 78-100 28-50 (204)
484 2id3_A Putative transcriptiona 36.7 35 0.0012 25.1 3.8 24 78-101 57-80 (225)
485 3fx3_A Cyclic nucleotide-bindi 36.6 20 0.00067 26.7 2.4 26 82-107 179-207 (237)
486 2g3b_A Putative TETR-family tr 36.5 31 0.001 25.2 3.4 24 78-101 20-43 (208)
487 3nxc_A HTH-type protein SLMA; 36.5 20 0.00069 25.4 2.4 42 84-125 29-76 (212)
488 3ppb_A Putative TETR family tr 36.4 20 0.00069 24.9 2.3 42 84-125 14-60 (195)
489 2ras_A Transcriptional regulat 36.4 20 0.00069 25.7 2.4 23 78-100 28-50 (212)
490 2dg7_A Putative transcriptiona 36.3 21 0.00071 25.3 2.4 25 78-102 24-48 (195)
491 3qbm_A TETR transcriptional re 36.3 19 0.00065 25.2 2.2 23 78-100 24-46 (199)
492 3crj_A Transcription regulator 36.3 17 0.00059 26.3 2.0 42 84-125 19-65 (199)
493 2dg7_A Putative transcriptiona 36.2 14 0.00048 26.3 1.5 30 90-119 22-52 (195)
494 3doa_A Fibrinogen binding prot 36.2 71 0.0024 26.2 6.0 56 69-126 172-233 (288)
495 3swk_A Vimentin; cytoskeleton, 36.1 61 0.0021 22.4 4.7 41 114-155 43-83 (86)
496 3lwf_A LIN1550 protein, putati 36.0 23 0.00079 26.8 2.7 23 82-104 45-67 (159)
497 3dn7_A Cyclic nucleotide bindi 36.0 7.6 0.00026 28.0 0.0 26 80-105 167-192 (194)
498 1pb6_A Hypothetical transcript 35.9 26 0.00087 24.9 2.8 42 84-125 23-69 (212)
499 2gen_A Probable transcriptiona 35.9 34 0.0012 24.5 3.6 22 79-100 25-46 (197)
500 3he0_A Transcriptional regulat 35.9 20 0.0007 25.1 2.3 42 84-125 16-62 (196)
No 1
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=96.60 E-value=0.0017 Score=47.22 Aligned_cols=40 Identities=13% Similarity=0.193 Sum_probs=34.4
Q ss_pred HHhhcCCcHHHHHHHcCCChhHHHHHHHHcCCCCChhHHH
Q 041600 76 LMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKI 115 (160)
Q Consensus 76 L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWPyRki 115 (160)
....-++++.|.|+..|||++|+-|.||++|..-|+-=|.
T Consensus 34 ~~~~~~~si~elA~~~~vS~aTv~Rf~kklG~~gf~efk~ 73 (111)
T 2o3f_A 34 PHXAIESTVNEISALANSSDAAVIRLCXSLGLKGFQDLXM 73 (111)
T ss_dssp HHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHHHHH
T ss_pred hHHHHhcCHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 3345589999999999999999999999999999885443
No 2
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=96.10 E-value=0.0034 Score=45.67 Aligned_cols=40 Identities=10% Similarity=0.143 Sum_probs=33.7
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCCCCChh
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPH 112 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWPy 112 (160)
++.....-++++.+.|+..|||++++=|.||++|...|+-
T Consensus 27 l~~~~~~~~~si~elA~~~~vS~aTv~Rf~kkLGf~gf~e 66 (107)
T 3iwf_A 27 LNYPHKVVNMTSQEIANQLETSSTSIIRLSKKVTPGGFNE 66 (107)
T ss_dssp HHCHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHSTTHHHH
T ss_pred HhCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHhCCCCHHH
Confidence 3334455689999999999999999999999999877663
No 3
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=95.99 E-value=0.0096 Score=38.87 Aligned_cols=31 Identities=3% Similarity=0.082 Sum_probs=27.3
Q ss_pred hhcCCcHHHHHHHcCCChhHHHHHHHHcCCC
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKKICRRDGLH 108 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~ 108 (160)
..++-.+.+||+.||||.++|-+..+++||.
T Consensus 29 ~~~~gn~~~aA~~LGisr~tL~rklkk~gi~ 59 (63)
T 3e7l_A 29 REYDYDLKRTAEEIGIDLSNLYRKIKSLNIR 59 (63)
T ss_dssp HHTTTCHHHHHHHHTCCHHHHHHHHHHTTCC
T ss_pred HHhCCCHHHHHHHHCcCHHHHHHHHHHhCCC
Confidence 3446778999999999999999999999994
No 4
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=95.57 E-value=0.019 Score=33.35 Aligned_cols=25 Identities=8% Similarity=0.280 Sum_probs=22.5
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
+++..++|+.||||.+|+++..+++
T Consensus 21 g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 21 NVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 6899999999999999999987654
No 5
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=95.43 E-value=0.018 Score=37.54 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=24.9
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHcCCC
Q 041600 82 LPIEEAARRMKLCPTVVKKICRRDGLH 108 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~CR~~GI~ 108 (160)
--..+||+.||||.++|.+..+++||.
T Consensus 34 gn~~~aA~~LGIsr~tL~rklkk~gi~ 60 (61)
T 1g2h_A 34 PSTRKLAQRLGVSHTAIANKLKQYGIG 60 (61)
T ss_dssp CSHHHHHHHTTSCTHHHHHHHHTTTCC
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHhCCC
Confidence 478899999999999999999999984
No 6
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=95.22 E-value=0.023 Score=40.61 Aligned_cols=26 Identities=12% Similarity=0.092 Sum_probs=22.4
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHcCC
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRDGL 107 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~GI 107 (160)
.+++.|+|+.+|||+.||+..-+. |+
T Consensus 1 ~~~i~e~A~~~gvs~~tLR~ye~~-Gl 26 (108)
T 2vz4_A 1 SYSVGQVAGFAGVTVRTLHHYDDI-GL 26 (108)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHH-TS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHC-CC
Confidence 368999999999999999988765 75
No 7
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=95.11 E-value=0.028 Score=40.08 Aligned_cols=73 Identities=11% Similarity=0.142 Sum_probs=43.9
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHcCCCC-----------ChhHHHhhHHH---------HHHHHhhhccCCcHHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRDGLHR-----------WPHRKIKSIQR---------RMSVASGRLRSNDAEERANA 140 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~GI~R-----------WPyRkikSl~~---------~i~~L~~~~~~~~~eerar~ 140 (160)
.+++.|+|+.+|||+.||+..-+ .|+-. +....+..+.. .++.+...+...+.+.+...
T Consensus 2 ~~~i~e~A~~~gvs~~tLR~ye~-~Gll~p~~~~~~g~R~Y~~~dl~~l~~I~~l~~~G~~l~~I~~~l~~~~~~~~~~l 80 (109)
T 1r8d_A 2 KYQVKQVAEISGVSIRTLHHYDN-IELLNPSALTDAGYRLYSDADLERLQQILFFKEIGFRLDEIKEMLDHPNFDRKAAL 80 (109)
T ss_dssp CBCHHHHHHHHSCCHHHHHHHHH-TTSSCCSEECTTCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHCTTSCHHHHH
T ss_pred CccHHHHHHHHCcCHHHHHHHHH-CCCCCCCeECCCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHhCCCHHHHHHH
Confidence 37899999999999999998765 56532 22222222221 24555555543322344556
Q ss_pred HHHHHHHHHHHHHH
Q 041600 141 QIEIQRLQEEMAAA 154 (160)
Q Consensus 141 ~~eIerL~~Em~~~ 154 (160)
..+++.|++++..+
T Consensus 81 ~~~~~~l~~~i~~l 94 (109)
T 1r8d_A 81 QSQKEILMKKKQRM 94 (109)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66667777666655
No 8
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=95.00 E-value=0.027 Score=39.52 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=26.1
Q ss_pred hcCCcHHHHHHHcCCChhHHHHHHHHcCC
Q 041600 79 YFHLPIEEAARRMKLCPTVVKKICRRDGL 107 (160)
Q Consensus 79 yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI 107 (160)
-++--+.+||+.|||+.++|.+..+++||
T Consensus 52 ~~~GN~s~AA~~LGISR~TLyrKLkk~gi 80 (81)
T 1umq_A 52 MCDRNVSETARRLNMHRRTLQRILAKRSP 80 (81)
T ss_dssp HTTSCHHHHHHHHTSCHHHHHHHHHTSSC
T ss_pred HhCCCHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 34667899999999999999999999998
No 9
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=94.59 E-value=0.017 Score=34.18 Aligned_cols=27 Identities=7% Similarity=0.074 Sum_probs=24.0
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHcCC
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRDGL 107 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~GI 107 (160)
++++.++|+.||||.+|+.+..+++++
T Consensus 21 g~s~~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 21 GHPRQQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp TCCHHHHHHTTSCCHHHHHHHSCTTC-
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHccc
Confidence 589999999999999999999887775
No 10
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=94.56 E-value=0.059 Score=36.92 Aligned_cols=34 Identities=12% Similarity=0.193 Sum_probs=27.5
Q ss_pred HHHHhhc---CCcHHHHHHHcCCChhHHHHHHHHcCC
Q 041600 74 RDLMIYF---HLPIEEAARRMKLCPTVVKKICRRDGL 107 (160)
Q Consensus 74 ~~L~~yF---~lP~~eAA~~Lgv~~T~LKr~CR~~GI 107 (160)
.-+..|. +.++.++|+.+|||.++|.+..+++..
T Consensus 13 ~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~~~~ 49 (97)
T 2jn6_A 13 DAVALYENSDGASLQQIANDLGINRVTLKNWIIKYGS 49 (97)
T ss_dssp HHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHHHhh
Confidence 3344554 689999999999999999999887755
No 11
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=94.56 E-value=0.042 Score=39.48 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=26.8
Q ss_pred hhcCCcHHHHHHHcCCChhHHHHHHHHcCC
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKKICRRDGL 107 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI 107 (160)
...+--+.+||+.|||+.++|.+..+++||
T Consensus 68 ~~~~gn~~~AA~~LGIsR~TL~rkLkk~gi 97 (98)
T 1eto_A 68 QYTLGNQTRAALMMGINRGTLRKKLKKYGM 97 (98)
T ss_dssp HHTTTCHHHHHHHHTSCHHHHHHHHHHTTC
T ss_pred HHhCCCHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 445678899999999999999999999998
No 12
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=94.44 E-value=0.099 Score=36.20 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=38.2
Q ss_pred HHhhc---CCcHHHHHHHcCCChhHHHHHHHHc-CCCCChhHHHhhHHHHHHHHh
Q 041600 76 LMIYF---HLPIEEAARRMKLCPTVVKKICRRD-GLHRWPHRKIKSIQRRMSVAS 126 (160)
Q Consensus 76 L~~yF---~lP~~eAA~~Lgv~~T~LKr~CR~~-GI~RWPyRkikSl~~~i~~L~ 126 (160)
|..++ .+++.+.|+.+|+|+++|.|++++. |++---|.....+++...-|.
T Consensus 12 i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~ 66 (107)
T 2k9s_A 12 ISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLS 66 (107)
T ss_dssp HHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 44444 3889999999999999999999986 987655665555555555444
No 13
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=94.28 E-value=0.019 Score=40.02 Aligned_cols=28 Identities=18% Similarity=0.125 Sum_probs=24.5
Q ss_pred cCCcHHHHHHHcCCChhHHHHHHHHcCC
Q 041600 80 FHLPIEEAARRMKLCPTVVKKICRRDGL 107 (160)
Q Consensus 80 F~lP~~eAA~~Lgv~~T~LKr~CR~~GI 107 (160)
++-.+.+||+.||||.++|.+..+++||
T Consensus 63 ~~gn~~~aA~~LGIsr~tL~rklkk~~i 90 (91)
T 1ntc_A 63 TQGHKQEAARLLGWGAATLTAKLKELGM 90 (91)
T ss_dssp TTTCTTHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHCcCHHHHHHHHHHhCc
Confidence 4567789999999999999999988876
No 14
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=94.27 E-value=0.1 Score=32.07 Aligned_cols=39 Identities=10% Similarity=0.007 Sum_probs=30.8
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCCCCChhH
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHR 113 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWPyR 113 (160)
+..++...++++.+.|+.+|||.+++.++. .|-...+..
T Consensus 6 l~~~r~~~g~s~~~lA~~~gis~~~i~~~e--~g~~~~~~~ 44 (66)
T 2xi8_A 6 LKLIREKKKISQSELAALLEVSRQTINGIE--KNKYNPSLQ 44 (66)
T ss_dssp HHHHHHHTTCCHHHHHHHHTSCHHHHHHHH--TTSCCCCHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHH--cCCCCCCHH
Confidence 567778889999999999999999999985 454333333
No 15
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=93.92 E-value=0.12 Score=31.98 Aligned_cols=39 Identities=3% Similarity=-0.020 Sum_probs=30.3
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCCCCChhH
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHR 113 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWPyR 113 (160)
+..++...++++.++|+.+||+.+++.++ +.|-...+..
T Consensus 10 l~~~r~~~g~s~~~lA~~~gis~~~i~~~--e~g~~~~~~~ 48 (68)
T 2r1j_L 10 IRARRKKLKIRQAALGKMVGVSNVAISQW--ERSETEPNGE 48 (68)
T ss_dssp HHHHHHHHTCCHHHHHHHHTSCHHHHHHH--HTTSSCCBHH
T ss_pred HHHHHHHcCCCHHHHHHHHCCCHHHHHHH--HcCCCCCCHH
Confidence 55677778999999999999999999998 4554333333
No 16
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=93.74 E-value=0.11 Score=35.72 Aligned_cols=46 Identities=7% Similarity=0.145 Sum_probs=36.5
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc-CCCCChhHHHhhHHHHHHHHh
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD-GLHRWPHRKIKSIQRRMSVAS 126 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~-GI~RWPyRkikSl~~~i~~L~ 126 (160)
.+++.+.|+.+|+|+++|.+++++. |++---|.+...+++...-|.
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~~g~s~~~~~~~~Rl~~A~~lL~ 65 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKNFGIPFQDYLLQKRMEKAKLLLL 65 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999998 986555666656665555554
No 17
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=93.69 E-value=0.14 Score=32.54 Aligned_cols=40 Identities=18% Similarity=0.128 Sum_probs=31.1
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCCCCChhHH
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRK 114 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWPyRk 114 (160)
+..++.-.++.+.++|+.+||+.+++.++ +.|-...+...
T Consensus 15 l~~~r~~~glsq~~lA~~~gis~~~i~~~--e~g~~~~~~~~ 54 (77)
T 2b5a_A 15 LKKIRTQKGVSQEELADLAGLHRTYISEV--ERGDRNISLIN 54 (77)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHH--HTTCSCCBHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCCCHHHHHHH--HCCCCCCCHHH
Confidence 55667778999999999999999999998 45654444433
No 18
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=93.55 E-value=0.16 Score=31.97 Aligned_cols=41 Identities=24% Similarity=0.122 Sum_probs=31.3
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCCCCChhHHH
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKI 115 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWPyRki 115 (160)
+..++...++.+.+.|+.+||+.+++.++ +.|-...+...+
T Consensus 18 l~~~r~~~g~s~~~lA~~~gis~~~i~~~--e~g~~~~~~~~l 58 (74)
T 1y7y_A 18 LRELRTAKGLSQETLAFLSGLDRSYVGGV--ERGQRNVSLVNI 58 (74)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHH--HTTCSCCBHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHH--HCCCCCCCHHHH
Confidence 55667778999999999999999999998 456544334443
No 19
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=93.38 E-value=0.24 Score=31.54 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=33.1
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCCC-CChhHHHhhH
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLH-RWPHRKIKSI 118 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~-RWPyRkikSl 118 (160)
+..++.-.++.+.+.|+.+|||.+++.++. .|-. ..+...+..+
T Consensus 12 l~~~r~~~g~sq~~lA~~~gis~~~i~~~e--~g~~~~~~~~~l~~i 56 (78)
T 3b7h_A 12 LMELITQQNLTINRVATLAGLNQSTVNAMF--EGRSKRPTITTIRKV 56 (78)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHH--CTTCCCCCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHH--cCCCCCCCHHHHHHH
Confidence 556777789999999999999999999994 5654 4444444443
No 20
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=93.34 E-value=0.24 Score=31.39 Aligned_cols=43 Identities=7% Similarity=0.035 Sum_probs=33.3
Q ss_pred CCHHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCCCCChhHHH
Q 041600 71 LTLRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKI 115 (160)
Q Consensus 71 lt~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWPyRki 115 (160)
-.+..++...++.+.+.|+.+||+.+++.++. .|-...+...+
T Consensus 13 ~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e--~g~~~~~~~~l 55 (76)
T 3bs3_A 13 NRIKVVLAEKQRTNRWLAEQMGKSENTISRWC--SNKSQPSLDML 55 (76)
T ss_dssp BCHHHHHHHTTCCHHHHHHHHTCCHHHHHHHH--TTSSCCCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH--cCCCCCCHHHH
Confidence 35778888889999999999999999999984 46443333333
No 21
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=93.30 E-value=0.18 Score=32.86 Aligned_cols=39 Identities=13% Similarity=0.155 Sum_probs=31.3
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCCCCChhH
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHR 113 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWPyR 113 (160)
+..++.--++++.+.|+.+||+.+++.++ +.|-...+..
T Consensus 16 lk~~R~~~glsq~~lA~~~gis~~~i~~~--e~g~~~~~~~ 54 (82)
T 3s8q_A 16 IKKIRLEKGMTQEDLAYKSNLDRTYISGI--ERNSRNLTIK 54 (82)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHH--HTTCCCCBHH
T ss_pred HHHHHHHcCCCHHHHHHHhCcCHHHHHHH--HCCCCCCCHH
Confidence 56677778999999999999999999999 5676443333
No 22
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=93.25 E-value=0.56 Score=33.15 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=30.3
Q ss_pred CHHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCC
Q 041600 72 TLRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGL 107 (160)
Q Consensus 72 t~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI 107 (160)
.+..++.-.++.+.++|+.+|||.+++.++ +.|-
T Consensus 27 ~Lk~~R~~~gltq~elA~~~gis~~~is~~--E~G~ 60 (111)
T 3mlf_A 27 TLKELRTDYGLTQKELGDLFKVSSRTIQNM--EKDS 60 (111)
T ss_dssp EHHHHHHHTTCCHHHHHHHHTSCHHHHHHH--HHCC
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHH--HCCC
Confidence 478889999999999999999999999999 4565
No 23
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=93.23 E-value=0.17 Score=32.01 Aligned_cols=40 Identities=3% Similarity=-0.012 Sum_probs=30.7
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCCCCChhHH
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRK 114 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWPyRk 114 (160)
+..++..-++.+.+.|+.+|||.+++.++ +.|-...+...
T Consensus 10 l~~~r~~~gls~~~lA~~~gis~~~i~~~--e~g~~~~~~~~ 49 (76)
T 1adr_A 10 IRARRKKLKIRQAALGKMVGVSNVAISQW--ERSETEPNGEN 49 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTSCHHHHHHH--HTTSSCCCHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHH--HcCCCCCCHHH
Confidence 55667777999999999999999999998 45644433333
No 24
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=93.18 E-value=0.18 Score=34.23 Aligned_cols=35 Identities=11% Similarity=0.184 Sum_probs=27.2
Q ss_pred cCCcHHHHHHHcCCChhHHHHHHHHcCCCCChhHHHhhHHHHHH
Q 041600 80 FHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKIKSIQRRMS 123 (160)
Q Consensus 80 F~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWPyRkikSl~~~i~ 123 (160)
-+++.+|+|+.||||..++|.+- +|=++.|++.+.
T Consensus 52 ~g~s~~eIA~~lgis~~tV~~~l---------~ra~~~Lr~~l~ 86 (92)
T 3hug_A 52 RGWSTAQIATDLGIAEGTVKSRL---------HYAVRALRLTLQ 86 (92)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHH---------HHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH---------HHHHHHHHHHHH
Confidence 37999999999999999999885 444555555444
No 25
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=93.18 E-value=0.27 Score=31.37 Aligned_cols=45 Identities=13% Similarity=0.023 Sum_probs=34.3
Q ss_pred CHHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCCCCChhHHHhhH
Q 041600 72 TLRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKIKSI 118 (160)
Q Consensus 72 t~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWPyRkikSl 118 (160)
.+..++.--++++.+.|+.+||+.+++.++. .|-...+...+..+
T Consensus 12 ~l~~~r~~~glsq~~lA~~~gis~~~is~~e--~g~~~~~~~~l~~i 56 (73)
T 3omt_A 12 RLKSVLAEKGKTNLWLTETLDKNKTTVSKWC--TNDVQPSLETLFDI 56 (73)
T ss_dssp CHHHHHHHHTCCHHHHHHHTTCCHHHHHHHH--TTSSCCCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH--cCCCCCCHHHHHHH
Confidence 4778888889999999999999999999995 45444444444433
No 26
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=93.17 E-value=0.15 Score=36.08 Aligned_cols=45 Identities=16% Similarity=0.207 Sum_probs=34.2
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHcCCCCChhHHHhhHHHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKIKSIQRRMSVA 125 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWPyRkikSl~~~i~~L 125 (160)
.+++.+.|+.+|||+++|.|.+++.|++---|.....++....-|
T Consensus 23 ~~~~~~lA~~~~~S~~~l~r~fk~~G~s~~~~~~~~Rl~~A~~lL 67 (120)
T 3mkl_A 23 EWTLARIASELLMSPSLLKKKLREEETSYSQLLTECRMQRALQLI 67 (120)
T ss_dssp CCCHHHHHHHTTCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999988644455555555544444
No 27
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=93.13 E-value=0.13 Score=35.57 Aligned_cols=46 Identities=4% Similarity=0.057 Sum_probs=35.3
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc-CCCCChhHHHhhHHHHHHHHh
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD-GLHRWPHRKIKSIQRRMSVAS 126 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~-GI~RWPyRkikSl~~~i~~L~ 126 (160)
.+++.+.|+.+|||+++|.|.+++. |++---|.....+++...-|.
T Consensus 21 ~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~ 67 (108)
T 3oou_A 21 GMSLKTLGNDFHINAVYLGQLFQKEMGEHFTDYLNRYRVNYAKEELL 67 (108)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999999988 986555555555555444443
No 28
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=93.13 E-value=0.13 Score=35.62 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=35.7
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc-CCCCChhHHHhhHHHHHHHHh
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD-GLHRWPHRKIKSIQRRMSVAS 126 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~-GI~RWPyRkikSl~~~i~~L~ 126 (160)
.+++.+.|+.+|+|+++|.|++++. |++---|.....+++...-|.
T Consensus 18 ~~~~~~lA~~~~~s~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~ 64 (108)
T 3mn2_A 18 PITIEKLTALTGISSRGIFKAFQRSRGYSPMAFAKRVRLQHAHNLLS 64 (108)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999997 986555655555555554444
No 29
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=93.08 E-value=0.7 Score=31.96 Aligned_cols=44 Identities=16% Similarity=0.079 Sum_probs=32.0
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCCCCChhHHHhhH
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKIKSI 118 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWPyRkikSl 118 (160)
+..++.-.++.+.+.|+.+|||.+++.++. .|...-+...+..+
T Consensus 14 l~~~r~~~glsq~~lA~~~gis~~~i~~~e--~g~~~p~~~~l~~l 57 (114)
T 3op9_A 14 LSRLKKEHGLKNHQIAELLNVQTRTVAYYM--SGETKPDIEKLIRL 57 (114)
T ss_dssp HHHHHHHHTCCHHHHHHHHTSCHHHHHHHH--HTSSCCCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHH--cCCCCCCHHHHHHH
Confidence 567778889999999999999999999884 45433333344333
No 30
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=92.89 E-value=0.34 Score=30.36 Aligned_cols=42 Identities=14% Similarity=0.161 Sum_probs=31.6
Q ss_pred HHHHHhhcCCcHHHHHHHcC--CChhHHHHHHHHcCCCCChhHHHh
Q 041600 73 LRDLMIYFHLPIEEAARRMK--LCPTVVKKICRRDGLHRWPHRKIK 116 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lg--v~~T~LKr~CR~~GI~RWPyRkik 116 (160)
+..++.-.++++.+.|+.+| |+.+++.++ +.|-...+...+.
T Consensus 13 l~~~r~~~glsq~~lA~~~g~~is~~~i~~~--e~g~~~~~~~~l~ 56 (71)
T 2ewt_A 13 LRAIRTQQGLSLHGVEEKSQGRWKAVVVGSY--ERGDRAVTVQRLA 56 (71)
T ss_dssp HHHHHHHTTCCHHHHHHHTTTSSCHHHHHHH--HHTCSCCCHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCCcCCHHHHHHH--HCCCCCCCHHHHH
Confidence 55677778999999999999 999999998 4565443343333
No 31
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=92.82 E-value=0.31 Score=31.78 Aligned_cols=41 Identities=15% Similarity=0.163 Sum_probs=30.7
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCCCCChhHHH
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKI 115 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWPyRki 115 (160)
+..++.-.++++.+.|+.+|||.+++.++ +.|-...+...+
T Consensus 17 l~~~r~~~gltq~~lA~~~gvs~~~is~~--e~g~~~~~~~~~ 57 (80)
T 3kz3_A 17 WEKKKNELGLSYESVADKMGMGQSAVAAL--FNGINALNAYNA 57 (80)
T ss_dssp HHHHHHHHTCCHHHHHHHTTSCHHHHHHH--HTTSSCCCHHHH
T ss_pred HHHHHHHcCCCHHHHHHHhCcCHHHHHHH--HcCCCCCCHHHH
Confidence 44556667899999999999999999998 456544444333
No 32
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=92.73 E-value=0.035 Score=36.38 Aligned_cols=30 Identities=10% Similarity=0.117 Sum_probs=24.0
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHcCCCCChhHHH
Q 041600 82 LPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKI 115 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWPyRki 115 (160)
|...|||+.||||.+||.+..+ .|+ |+.++
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~-~G~---P~~~~ 32 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQE-QGM---PVLRG 32 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTT-TTC---CCSSC
T ss_pred cCHHHHHHHHCcCHHHHHHHHH-CCC---CeEee
Confidence 6789999999999999988764 476 65443
No 33
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=92.65 E-value=0.068 Score=32.90 Aligned_cols=23 Identities=9% Similarity=0.215 Sum_probs=21.1
Q ss_pred CCcHHHHHHHcCCChhHHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICR 103 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR 103 (160)
+++..++|+.||||.+|+++..+
T Consensus 31 g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 31 GYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHH
Confidence 68999999999999999998864
No 34
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=92.54 E-value=0.45 Score=30.67 Aligned_cols=35 Identities=26% Similarity=0.135 Sum_probs=29.5
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCCCC
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHR 109 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~R 109 (160)
+..++...++.+.++|+.+||+.+++.++ +.|-..
T Consensus 15 l~~~r~~~glsq~~lA~~~gis~~~i~~~--e~g~~~ 49 (84)
T 2ef8_A 15 LTKLRKEASLSQSELAIFLGLSQSDISKI--ESFERR 49 (84)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHH--HTTSSC
T ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHH--HcCCCC
Confidence 56777888999999999999999999998 556533
No 35
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=92.46 E-value=0.19 Score=31.33 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=29.3
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCCCC
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHR 109 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~R 109 (160)
+..++...++.+.+.|+.+|||.+++.++ +.|-..
T Consensus 8 l~~~r~~~glsq~~lA~~~gis~~~i~~~--e~g~~~ 42 (71)
T 1zug_A 8 LKKRRIALKMTQTELATKAGVKQQSIQLI--EAGVTK 42 (71)
T ss_dssp HHHHHHHTTCCHHHHHHHHTSCHHHHHHH--HTTCCS
T ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHH--HcCCCC
Confidence 55677788999999999999999999998 456544
No 36
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=92.29 E-value=0.59 Score=33.76 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=20.9
Q ss_pred cCCcHHHHHHHcCCChhHHHHHHH
Q 041600 80 FHLPIEEAARRMKLCPTVVKKICR 103 (160)
Q Consensus 80 F~lP~~eAA~~Lgv~~T~LKr~CR 103 (160)
-+++..|+|+.||||++++++..+
T Consensus 37 ~g~s~~EIA~~lgiS~~tV~~~l~ 60 (113)
T 1s7o_A 37 DDYSLAEIADEFGVSRQAVYDNIK 60 (113)
T ss_dssp TCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 379999999999999999887654
No 37
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=92.27 E-value=0.36 Score=32.52 Aligned_cols=44 Identities=16% Similarity=0.265 Sum_probs=32.1
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCCCCChhHHHhhH
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKIKSI 118 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWPyRkikSl 118 (160)
+..++...++.+.++|+.+||+.+++.++. .|-...+...+..+
T Consensus 14 lk~~r~~~glsq~~lA~~~gis~~~is~~e--~G~~~p~~~~l~~i 57 (94)
T 2kpj_A 14 LNSYIAKSEKTQLEIAKSIGVSPQTFNTWC--KGIAIPRMGKVQAL 57 (94)
T ss_dssp HHHHHTTSSSCHHHHHHHHTCCHHHHHHHH--TTSCCCCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHH--hCCCCCCHHHHHHH
Confidence 556677789999999999999999999984 45433334333333
No 38
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=92.26 E-value=0.36 Score=31.33 Aligned_cols=35 Identities=20% Similarity=0.140 Sum_probs=29.2
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCCCC
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHR 109 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~R 109 (160)
+..++.--++++.+.|+.+||+.+++.++ +.|-..
T Consensus 19 l~~~R~~~gltq~elA~~~gis~~~is~~--e~g~~~ 53 (83)
T 3f6w_A 19 LLEARSAAGITQKELAARLGRPQSFVSKT--ENAERR 53 (83)
T ss_dssp HHHHHHHHTCCHHHHHHHHTSCHHHHHHH--HTTSSC
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHH--HCCCCC
Confidence 56677778999999999999999999999 456533
No 39
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=92.21 E-value=0.3 Score=31.56 Aligned_cols=33 Identities=18% Similarity=0.147 Sum_probs=28.4
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCC
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGL 107 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI 107 (160)
+..++..-++.+.+.|+.+||+.+++.++. .|-
T Consensus 7 lk~~r~~~glsq~~lA~~~gis~~~i~~~e--~g~ 39 (77)
T 2k9q_A 7 LKVERIRLSLTAKSVAEEMGISRQQLCNIE--QSE 39 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTSCHHHHHHHH--TCC
T ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHH--cCC
Confidence 566778889999999999999999999984 564
No 40
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=92.15 E-value=0.21 Score=34.79 Aligned_cols=51 Identities=8% Similarity=0.060 Sum_probs=36.0
Q ss_pred HHhhc--CCcHHHHHHHcCCChhHHHHHHHHc-CCCCChhHHHhhHHHHHHHHh
Q 041600 76 LMIYF--HLPIEEAARRMKLCPTVVKKICRRD-GLHRWPHRKIKSIQRRMSVAS 126 (160)
Q Consensus 76 L~~yF--~lP~~eAA~~Lgv~~T~LKr~CR~~-GI~RWPyRkikSl~~~i~~L~ 126 (160)
|..++ .+++.+.|+.+|||+++|.+++++. |++---|.....+++...-|.
T Consensus 16 i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~ 69 (113)
T 3oio_A 16 MEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLGTVPSKYYLELRLNRARQLLQ 69 (113)
T ss_dssp HHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 34444 4789999999999999999999998 886444444444444444443
No 41
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=91.93 E-value=0.26 Score=35.30 Aligned_cols=45 Identities=9% Similarity=0.141 Sum_probs=33.5
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc-CCCCChhHHHhhHHHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD-GLHRWPHRKIKSIQRRMSVA 125 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~-GI~RWPyRkikSl~~~i~~L 125 (160)
.+++.++|+.+|+|+++|.|++++. |++--=|.+...+++...-|
T Consensus 27 ~~sl~~lA~~~~~S~~~l~r~fk~~~G~s~~~~l~~~Rl~~A~~lL 72 (129)
T 1bl0_A 27 PLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKL 72 (129)
T ss_dssp CCCCHHHHHHSSSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 3889999999999999999999987 88544444444444444444
No 42
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=91.70 E-value=0.46 Score=32.33 Aligned_cols=46 Identities=7% Similarity=0.074 Sum_probs=32.7
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcC-CCCChhHHHhhHHH
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDG-LHRWPHRKIKSIQR 120 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~G-I~RWPyRkikSl~~ 120 (160)
+..++...++++.+.|+.+|||.+++.++ +.| ....+...+..+-.
T Consensus 6 l~~~r~~~gltq~~lA~~~gis~~~i~~~--e~g~~~~p~~~~l~~ia~ 52 (111)
T 1b0n_A 6 IKQYRKEKGYSLSELAEKAGVAKSYLSSI--ERNLQTNPSIQFLEKVSA 52 (111)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHH--HTTCCSCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHH--HcCCCCCCCHHHHHHHHH
Confidence 45677778899999999999999999888 456 44434444444433
No 43
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=91.53 E-value=0.17 Score=33.06 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=31.8
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCCCCChhHHH
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKI 115 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWPyRki 115 (160)
+..++.-.++++.+.|+.+|||.+++.++ +.|- +-|-..+
T Consensus 16 lr~~R~~~gltq~elA~~~gvs~~tis~~--E~G~-~~p~~~~ 55 (73)
T 3fmy_A 16 IVKVRKKLSLTQKEASEIFGGGVNAFSRY--EKGN-AXPHPST 55 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHCSCTTHHHHH--HTTS-SCCCHHH
T ss_pred HHHHHHHcCCCHHHHHHHhCcCHHHHHHH--HcCC-CCCCHHH
Confidence 56677888999999999999999999999 5564 2454433
No 44
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=91.53 E-value=0.25 Score=32.25 Aligned_cols=31 Identities=6% Similarity=0.062 Sum_probs=27.1
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHH
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICR 103 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR 103 (160)
+..++...++.+.++|+.+||+.+++.++.+
T Consensus 17 l~~~r~~~glsq~~lA~~~gis~~~i~~~e~ 47 (88)
T 2wiu_B 17 MKLVRQQNGWTQSELAKKIGIKQATISNFEN 47 (88)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 5566777899999999999999999999954
No 45
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=91.46 E-value=0.3 Score=34.52 Aligned_cols=36 Identities=11% Similarity=0.009 Sum_probs=28.1
Q ss_pred cCCcHHHHHHHcCCChhHHHHHHHHcCCCCChhHHHhhHHHHHHH
Q 041600 80 FHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKIKSIQRRMSV 124 (160)
Q Consensus 80 F~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWPyRkikSl~~~i~~ 124 (160)
-+++.+|+|+.||||..+++++- +|=++.|++.+..
T Consensus 123 ~g~s~~EIA~~lgis~~tV~~~~---------~ra~~~Lr~~l~~ 158 (164)
T 3mzy_A 123 RGYSYREIATILSKNLKSIDNTI---------QRIRKKSEEWIKE 158 (164)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH---------HHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHH---------HHHHHHHHHHHHH
Confidence 47999999999999999999885 5555555555544
No 46
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=91.39 E-value=0.59 Score=30.69 Aligned_cols=32 Identities=9% Similarity=0.141 Sum_probs=28.1
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcC
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDG 106 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~G 106 (160)
+.+++.--++.+.++|+.+||+.+++.++ +.|
T Consensus 15 ik~~R~~~gltq~elA~~~gis~~~is~~--E~G 46 (78)
T 3qq6_A 15 IKQYRKEKGYSLSELAEKAGVAKSYLSSI--ERN 46 (78)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHH--HTT
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHH--HcC
Confidence 66777888999999999999999999999 456
No 47
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=91.25 E-value=0.27 Score=39.12 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=21.1
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHcCC
Q 041600 82 LPIEEAARRMKLCPTVVKKICRRDGL 107 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~CR~~GI 107 (160)
+++.|+|+.+|||+.||+..-+. |+
T Consensus 6 ~~i~e~a~~~gvs~~tlr~y~~~-gl 30 (278)
T 1r8e_A 6 YSIGEVSKLANVSIKALRYYDKI-DL 30 (278)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHT-TS
T ss_pred EeHHHHHHHHCcCHHHHHHHHHC-CC
Confidence 78999999999999999976543 65
No 48
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=91.23 E-value=0.31 Score=34.93 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=31.8
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCCCCChhHHH
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKI 115 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWPyRki 115 (160)
+..++.-.+|.+.++|+.||||.+++.++ +.|. +-|-..+
T Consensus 76 l~~~R~~~glsq~~la~~~g~s~~~i~~~--E~g~-~~p~~~~ 115 (133)
T 3o9x_A 76 IVKVRKKLSLTQKEASEIFGGGVNAFSRY--EKGN-AQPHPST 115 (133)
T ss_dssp HHHHHHHTTCCHHHHHHHHCSCTTHHHHH--HHTS-SCCCHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCCCHHHHHHH--HCCC-CCCCHHH
Confidence 55667889999999999999999999999 4564 3365444
No 49
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=91.14 E-value=2.5 Score=29.67 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=22.1
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHH
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
+..++.--++++.+.|+.+|||.+++.++
T Consensus 17 lk~~R~~~glsq~~lA~~~gis~~~is~~ 45 (126)
T 3ivp_A 17 IKEARKKQGLTREQVGAMIEIDPRYLTNI 45 (126)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHhCcCHHHHHHH
Confidence 55667777888888888888887766555
No 50
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=91.10 E-value=0.23 Score=30.76 Aligned_cols=35 Identities=14% Similarity=0.286 Sum_probs=28.9
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCCCC
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHR 109 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~R 109 (160)
+..++...++++.+.|+.+||+.+++.++ +.|-..
T Consensus 6 l~~~r~~~glsq~~lA~~~gis~~~i~~~--e~g~~~ 40 (69)
T 1r69_A 6 VKSKRIQLGLNQAELAQKVGTTQQSIEQL--ENGKTK 40 (69)
T ss_dssp HHHHHHHTTCCHHHHHHHHTSCHHHHHHH--HTTSCS
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHH--HcCCCC
Confidence 45677778999999999999999999998 455433
No 51
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=91.10 E-value=0.49 Score=32.76 Aligned_cols=47 Identities=11% Similarity=0.097 Sum_probs=34.7
Q ss_pred CHHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCCCCChhHHHhhHHHHHHH
Q 041600 72 TLRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKIKSIQRRMSV 124 (160)
Q Consensus 72 t~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWPyRkikSl~~~i~~ 124 (160)
.+.+++.--++++.+.|+.+|||.+++.++.+ |- + | .+..+.+..+-
T Consensus 28 rLk~lR~~~glTq~eLA~~~GiS~~tis~iE~--G~-~-~--s~~~l~kIa~~ 74 (88)
T 3t76_A 28 KLWKLLIDRDMKKGELREAVGVSKSTFAKLGK--NE-N-V--SLTVLLAICEY 74 (88)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT--TC-C-C--CHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc--CC-C-c--CHHHHHHHHHH
Confidence 36677788899999999999999999999954 52 3 4 44444443333
No 52
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=90.98 E-value=0.31 Score=33.68 Aligned_cols=25 Identities=28% Similarity=0.196 Sum_probs=21.5
Q ss_pred hcCCcHHHHHHHcCCChhHHHHHHH
Q 041600 79 YFHLPIEEAARRMKLCPTVVKKICR 103 (160)
Q Consensus 79 yF~lP~~eAA~~Lgv~~T~LKr~CR 103 (160)
+-+++.+|+|+.||||..+++...+
T Consensus 40 ~~g~s~~eIA~~l~is~~tV~~~l~ 64 (95)
T 3c57_A 40 SEGLTNKQIADRMFLAEKTVKNYVS 64 (95)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4579999999999999999887643
No 53
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=90.89 E-value=0.28 Score=31.50 Aligned_cols=22 Identities=14% Similarity=0.365 Sum_probs=20.5
Q ss_pred CCcHHHHHHHcCCChhHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKIC 102 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~C 102 (160)
+++.+|+|+.||||..+++.+-
T Consensus 25 g~s~~eIA~~lgis~~tV~~~~ 46 (68)
T 2p7v_B 25 DYTLEEVGKQFDVTRERIRQIE 46 (68)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHH
Confidence 7999999999999999999874
No 54
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=90.89 E-value=0.59 Score=30.85 Aligned_cols=39 Identities=15% Similarity=0.121 Sum_probs=28.9
Q ss_pred HHhhcCCcHHHHHHHcCCChhHHHHHHHHcCCCCChhHHHh
Q 041600 76 LMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKIK 116 (160)
Q Consensus 76 L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWPyRkik 116 (160)
++.-.++.+.+.|+.+||+.+++.++ +.|-...+...+.
T Consensus 25 ~R~~~glsq~~lA~~~gis~~~is~~--e~g~~~~~~~~l~ 63 (92)
T 1lmb_3 25 KKNELGLSQESVADKMGMGQSGVGAL--FNGINALNAYNAA 63 (92)
T ss_dssp HHHHHTCCHHHHHHHHTSCHHHHHHH--HTTSSCCCHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHH--HcCCCCCCHHHHH
Confidence 34556999999999999999999998 4565443334333
No 55
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=90.86 E-value=0.42 Score=32.03 Aligned_cols=35 Identities=9% Similarity=-0.105 Sum_probs=29.3
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCCCC
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHR 109 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~R 109 (160)
+..++...++.+.+.|+.+||+.+++.++ +.|-..
T Consensus 9 l~~~r~~~gltq~~lA~~~gis~~~is~~--e~g~~~ 43 (99)
T 2l49_A 9 IVLMRKSEYLSRQQLADLTGVPYGTLSYY--ESGRST 43 (99)
T ss_dssp HHHHHHHTTCCHHHHHHHHCCCHHHHHHH--TTTSSC
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHH--HcCCCC
Confidence 56778888999999999999999999998 456433
No 56
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=90.83 E-value=0.61 Score=30.99 Aligned_cols=31 Identities=13% Similarity=0.093 Sum_probs=27.3
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHH
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICR 103 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR 103 (160)
+..++...++.+.+.|+.+||+.+++.++-+
T Consensus 18 l~~~r~~~glsq~~lA~~~gis~~~is~~e~ 48 (91)
T 1x57_A 18 IQQGRQSKGLTQKDLATKINEKPQVIADYES 48 (91)
T ss_dssp HHHHHHTTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 5667788899999999999999999999844
No 57
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=90.57 E-value=0.32 Score=30.56 Aligned_cols=23 Identities=13% Similarity=0.049 Sum_probs=21.0
Q ss_pred cCCcHHHHHHHcCCChhHHHHHH
Q 041600 80 FHLPIEEAARRMKLCPTVVKKIC 102 (160)
Q Consensus 80 F~lP~~eAA~~Lgv~~T~LKr~C 102 (160)
.+++..|+|+.||+|.+++++..
T Consensus 30 ~g~s~~eIA~~lgis~~tv~~~~ 52 (70)
T 2o8x_A 30 LGLSYADAAAVCGCPVGTIRSRV 52 (70)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 47999999999999999999875
No 58
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=90.55 E-value=0.64 Score=30.97 Aligned_cols=33 Identities=21% Similarity=0.200 Sum_probs=28.9
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCC
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGL 107 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI 107 (160)
+..++.-.++++.+.|+.+|||.+++.++ +.|-
T Consensus 19 l~~~R~~~gltq~elA~~~gis~~~is~~--E~G~ 51 (86)
T 3eus_A 19 LRQARLDAGLTQADLAERLDKPQSFVAKV--ETRE 51 (86)
T ss_dssp HHHHHHHTTCCHHHHHHHTTCCHHHHHHH--HTTS
T ss_pred HHHHHHHcCCCHHHHHHHhCcCHHHHHHH--HCCC
Confidence 56677888999999999999999999999 6675
No 59
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=90.22 E-value=0.31 Score=35.89 Aligned_cols=24 Identities=25% Similarity=0.052 Sum_probs=21.5
Q ss_pred hcCCcHHHHHHHcCCChhHHHHHH
Q 041600 79 YFHLPIEEAARRMKLCPTVVKKIC 102 (160)
Q Consensus 79 yF~lP~~eAA~~Lgv~~T~LKr~C 102 (160)
+-+++.+|+|+.||||+.++|++-
T Consensus 154 ~~g~s~~EIA~~lgis~~tV~~~l 177 (194)
T 1or7_A 154 LDGLSYEEIAAIMDCPVGTVRSRI 177 (194)
T ss_dssp TTCCCHHHHHHHTTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHH
Confidence 347999999999999999999884
No 60
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=90.19 E-value=0.56 Score=35.63 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=21.9
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHcCCC
Q 041600 82 LPIEEAARRMKLCPTVVKKICRRDGLH 108 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~CR~~GI~ 108 (160)
+++.|+|+.+|||+.||+..-+. |+-
T Consensus 12 ~~i~e~A~~~gvs~~TLR~ye~~-Gll 37 (154)
T 2zhg_A 12 LTPGEVAKRSGVAVSALHFYESK-GLI 37 (154)
T ss_dssp BCHHHHHHHHTSCHHHHHHHHHT-TSS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHc-CCC
Confidence 79999999999999999977544 653
No 61
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=90.05 E-value=0.71 Score=32.29 Aligned_cols=45 Identities=20% Similarity=0.154 Sum_probs=33.5
Q ss_pred CHHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCCCCChhHHHhhH
Q 041600 72 TLRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKIKSI 118 (160)
Q Consensus 72 t~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWPyRkikSl 118 (160)
.+..++.--++.+.++|+.+||+.+++.++ +.|-...+...+..+
T Consensus 25 ~lr~~R~~~gltq~elA~~~gis~~~is~~--E~G~~~p~~~~l~~i 69 (114)
T 3vk0_A 25 NMRLFRVNKGWSQEELARQCGLDRTYVSAV--ERKRWNIALSNIEKM 69 (114)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHH--TTTCCCCCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHH--HcCCCCCCHHHHHHH
Confidence 366777888999999999999999999998 556544333333333
No 62
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=90.03 E-value=0.41 Score=32.01 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=27.9
Q ss_pred CCHHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 71 LTLRDLMIYFHLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 71 lt~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
+++..+.... .+.+||+.|||+.+++-+.||..
T Consensus 5 ~~Lk~l~~~~--sq~~~A~~Lgvsq~aVS~~~~~~ 37 (65)
T 2cw1_A 5 LDLKKFVEDK--NQEYAARALGLSQKLIEEVLKRG 37 (65)
T ss_dssp CCHHHHHTTS--CHHHHHHHSSSCHHHHHHHHHTT
T ss_pred HHHHHHHHHc--CHHHHHHHhCCCHHHHHHHHHhc
Confidence 4677776664 99999999999999999999764
No 63
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=89.99 E-value=0.61 Score=33.24 Aligned_cols=47 Identities=13% Similarity=0.295 Sum_probs=32.4
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHcCCCCChhHHHhhHHHH--HHHHhhhccC-CcHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKIKSIQRR--MSVASGRLRS-NDAEE 136 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWPyRkikSl~~~--i~~L~~~~~~-~~~ee 136 (160)
+++.+|+|..||||..++|.+- +|=++.|+.. ...|..++.. +.+|+
T Consensus 39 ~~s~~EIA~~lgiS~~tVr~~~---------~rAlkkLR~~~~~~~l~~~~~~~~~~~~ 88 (99)
T 3t72_q 39 DYTLEEVGKQFDVTRERIRQIE---------AKALRKLRHPSRSEVLRSGSSGSGTPEE 88 (99)
T ss_pred CCCHHHHHHHHCcCHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 5999999999999999999986 3334444433 3456666653 34443
No 64
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=89.96 E-value=0.3 Score=39.98 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=22.5
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHcCCC
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRDGLH 108 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~GI~ 108 (160)
.+++.|+|+.+|||+.||+-.-+ .|+-
T Consensus 3 ~~tI~evA~~~gvs~~TLRyYe~-~GLL 29 (249)
T 3qao_A 3 AMQIKELAELTGVSVRTLHHYDK-IGLL 29 (249)
T ss_dssp CBCHHHHHHHHCCCHHHHHHHHH-TTSS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHH-CCCC
Confidence 47899999999999999997654 6753
No 65
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=89.75 E-value=0.69 Score=32.09 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=29.8
Q ss_pred CHHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCCC
Q 041600 72 TLRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLH 108 (160)
Q Consensus 72 t~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~ 108 (160)
.+..++.--++.+.+.|+.+||+.+++.++ +.|-.
T Consensus 32 ~lr~~R~~~gltq~elA~~~gis~~~is~i--E~G~~ 66 (99)
T 3g5g_A 32 VIKKIRLEKGMTQEDLAYKSNLDRTYISGI--ERNSR 66 (99)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHH--HTTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHH--HCCCC
Confidence 366777888999999999999999999999 56653
No 66
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=89.64 E-value=0.37 Score=30.90 Aligned_cols=30 Identities=13% Similarity=0.141 Sum_probs=25.8
Q ss_pred CHHHHHhhcCCcHHHHHHHcCCChhHHHHHH
Q 041600 72 TLRDLMIYFHLPIEEAARRMKLCPTVVKKIC 102 (160)
Q Consensus 72 t~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~C 102 (160)
+++++...+ +.+.+.|+.||||.+++-+..
T Consensus 2 ~~~~~i~~~-~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 2 YKKDVIDHF-GTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp BHHHHHHHH-SSHHHHHHHHTCCHHHHHHCC
T ss_pred CHHHHHHHc-CCHHHHHHHhCCCHHHHHHHH
Confidence 567777776 599999999999999999876
No 67
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=89.40 E-value=0.94 Score=31.43 Aligned_cols=43 Identities=14% Similarity=0.233 Sum_probs=32.4
Q ss_pred CHHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCCCCChhHHHh
Q 041600 72 TLRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKIK 116 (160)
Q Consensus 72 t~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWPyRkik 116 (160)
.+..++.--++++.+.|+.+|||.+++.++ +.|-..-+...+.
T Consensus 32 ~l~~~R~~~glsq~~lA~~~gis~~~is~~--E~g~~~~~~~~l~ 74 (117)
T 3f52_A 32 ALRSFRADKGVTLRELAEASRVSPGYLSEL--ERGRKEVSSELLA 74 (117)
T ss_dssp HHHHHHHHHTCCHHHHHHHTTSCHHHHHHH--HTTSSCCCHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHH--HCCCCCCCHHHHH
Confidence 466777888999999999999999999998 5665433333333
No 68
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=89.31 E-value=0.93 Score=34.10 Aligned_cols=26 Identities=15% Similarity=0.022 Sum_probs=22.4
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHcCC
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRDGL 107 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~GI 107 (160)
.+++.|+|+.+|||+.||+..-+. |+
T Consensus 4 ~~tI~evA~~~Gvs~~tLR~ye~~-GL 29 (146)
T 3hh0_A 4 AWLISEFASVGDVTVRALRYYDKI-NL 29 (146)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHT-TS
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHC-CC
Confidence 378999999999999999987665 64
No 69
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=89.28 E-value=0.6 Score=35.00 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.2
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHcCC
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRDGL 107 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~GI 107 (160)
.+++.|+|+.+|||+.||+-.-+. |+
T Consensus 2 ~~~I~e~A~~~gvs~~tLR~Ye~~-GL 27 (142)
T 3gp4_A 2 SLNIKEASEKSGVSADTIRYYERI-GL 27 (142)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHHH-TS
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHC-CC
Confidence 478999999999999999977655 54
No 70
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=89.18 E-value=0.38 Score=31.82 Aligned_cols=30 Identities=17% Similarity=0.118 Sum_probs=26.7
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHH
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKIC 102 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~C 102 (160)
+..++...++.+.++|+.+||+.+++.++-
T Consensus 23 l~~~r~~~glsq~elA~~~gis~~~is~~e 52 (83)
T 2a6c_A 23 LQEHLRNSGLTQFKAAELLGVTQPRVSDLM 52 (83)
T ss_dssp HHHHHHTTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 667777889999999999999999999984
No 71
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=89.11 E-value=0.54 Score=30.63 Aligned_cols=34 Identities=6% Similarity=0.076 Sum_probs=29.0
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCC
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGL 107 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI 107 (160)
+.+++...+ .+.+.|+.+||+.+++-++.+-..+
T Consensus 4 l~~~r~~~g-sq~~lA~~lgvs~~~is~~e~g~~~ 37 (79)
T 3bd1_A 4 IDIAINKLG-SVSALAASLGVRQSAISNWRARGRV 37 (79)
T ss_dssp HHHHHHHHS-SHHHHHHHHTCCHHHHHHHHHHTCC
T ss_pred HHHHHHHhC-CHHHHHHHHCCCHHHHHHHHHCCCC
Confidence 567788889 9999999999999999999765444
No 72
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=88.67 E-value=0.94 Score=32.48 Aligned_cols=48 Identities=15% Similarity=0.082 Sum_probs=31.0
Q ss_pred hcCCcHHHHHHHcCCChhHHHHHHHHcC-------CCCChhHHHhhHHHHHHHHh
Q 041600 79 YFHLPIEEAARRMKLCPTVVKKICRRDG-------LHRWPHRKIKSIQRRMSVAS 126 (160)
Q Consensus 79 yF~lP~~eAA~~Lgv~~T~LKr~CR~~G-------I~RWPyRkikSl~~~i~~L~ 126 (160)
+-+++.+|+|+.||||.+++++.-++.- -..+-+.+...++..+..|.
T Consensus 39 ~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~~~~~~~~~~~~~~~~~~ 93 (113)
T 1xsv_A 39 LEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKLELYQKFEQRREIYDEMK 93 (113)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Confidence 3479999999999999998886543210 01133555555556666654
No 73
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=88.65 E-value=0.67 Score=31.50 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=30.5
Q ss_pred CCHHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCCC
Q 041600 71 LTLRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLH 108 (160)
Q Consensus 71 lt~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~ 108 (160)
++++++..+|. .+.++|+.||||..++-+--+..+|+
T Consensus 1 M~~~~ai~~~G-~~~~lA~~lGVs~~aVs~W~~g~~iP 37 (71)
T 2hin_A 1 MKPEELVRHFG-DVEKAAVGVGVTPGAVYQWLQAGEIP 37 (71)
T ss_dssp CCHHHHHHHHS-SHHHHHHHHTSCHHHHHHHHHHTSCC
T ss_pred CcHHHHHHHHC-CHHHHHHHHCCCHHHHHHHHhCCCCC
Confidence 36788888885 59999999999999999886666674
No 74
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=88.53 E-value=1.2 Score=30.30 Aligned_cols=35 Identities=14% Similarity=0.156 Sum_probs=30.8
Q ss_pred CCHHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCC
Q 041600 71 LTLRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGL 107 (160)
Q Consensus 71 lt~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI 107 (160)
-.+..++...++.+.+.|+.+||+.+++.++ +.|-
T Consensus 33 ~~lk~~R~~~glsq~elA~~lgvs~~~is~~--E~G~ 67 (99)
T 2ppx_A 33 PRIKIIRRALKLTQEEFSARYHIPLGTLRDW--EQGR 67 (99)
T ss_dssp CHHHHHHHHTTCCHHHHHHHHTCCHHHHHHH--HTTS
T ss_pred HHHHHHHHHcCCCHHHHHHHhCcCHHHHHHH--HcCC
Confidence 3578888999999999999999999999999 5664
No 75
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=88.14 E-value=0.35 Score=29.91 Aligned_cols=23 Identities=4% Similarity=-0.011 Sum_probs=19.9
Q ss_pred cCCcHHHHHHHcCCChhHHHHHH
Q 041600 80 FHLPIEEAARRMKLCPTVVKKIC 102 (160)
Q Consensus 80 F~lP~~eAA~~Lgv~~T~LKr~C 102 (160)
-+++.+|+|+.||+|..+++..-
T Consensus 12 ~g~s~~eIA~~l~is~~tV~~~~ 34 (61)
T 2jpc_A 12 EGYTNHGISEKLHISIKTVETHR 34 (61)
T ss_dssp TSCCSHHHHHHTCSCHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHH
Confidence 37999999999999999888664
No 76
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=87.89 E-value=0.37 Score=31.87 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=21.0
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHc
Q 041600 82 LPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
++++|+|+.+|||.+|+-+++.--
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng~ 24 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGK 24 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCC
Confidence 478999999999999999998643
No 77
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=87.84 E-value=0.36 Score=32.45 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=24.2
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHcCC
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRDGL 107 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~GI 107 (160)
.+++.|+|+.+||++.||+..-++.|+
T Consensus 5 ~~~i~e~A~~~gvs~~tlR~ye~~~gl 31 (81)
T 2jml_A 5 TLRIRTIARMTGIREATLRAWERRYGF 31 (81)
T ss_dssp CEEHHHHHHTTSTTHHHHHHHHHHTCC
T ss_pred cccHHHHHHHHCcCHHHHHHHHHhCCC
Confidence 478999999999999999999887675
No 78
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=87.64 E-value=0.49 Score=34.49 Aligned_cols=22 Identities=5% Similarity=0.043 Sum_probs=20.2
Q ss_pred CcHHHHHHHcCCChhHHHHHHH
Q 041600 82 LPIEEAARRMKLCPTVVKKICR 103 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~CR 103 (160)
+++.|+|+.||||.+++-|+-|
T Consensus 59 ~TQREIA~~lGiS~stISRi~r 80 (101)
T 1jhg_A 59 MSQRELKNELGAGIATITRGSN 80 (101)
T ss_dssp SCHHHHHHHHCCCHHHHHHHHH
T ss_pred cCHHHHHHHHCCChhhhhHHHH
Confidence 9999999999999999998843
No 79
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=87.55 E-value=0.39 Score=30.32 Aligned_cols=24 Identities=13% Similarity=0.126 Sum_probs=20.3
Q ss_pred CCc----HHHHHHHcCCChhHHHHHHHH
Q 041600 81 HLP----IEEAARRMKLCPTVVKKICRR 104 (160)
Q Consensus 81 ~lP----~~eAA~~Lgv~~T~LKr~CR~ 104 (160)
+.+ +.++|+.+||++++|.+..++
T Consensus 21 g~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 21 DNDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CTTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 467 999999999999999987543
No 80
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=87.43 E-value=0.6 Score=31.23 Aligned_cols=31 Identities=16% Similarity=0.426 Sum_probs=27.1
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHH
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICR 103 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR 103 (160)
+..++...++++.+.|+.+||+.+++.++.+
T Consensus 13 l~~~r~~~gltq~~lA~~~gis~~~is~~e~ 43 (94)
T 2ict_A 13 IQESLDELNVSLREFARAMEIAPSTASRLLT 43 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 5667777899999999999999999999854
No 81
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=87.38 E-value=1.1 Score=33.03 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=21.0
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHcCC
Q 041600 82 LPIEEAARRMKLCPTVVKKICRRDGL 107 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~CR~~GI 107 (160)
|++.|+|+.+|||+.||+..-+ .|+
T Consensus 1 ~~I~e~A~~~gvs~~tLR~ye~-~Gl 25 (135)
T 1q06_A 1 MNISDVAKITGLTSKAIRFYEE-KGL 25 (135)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHH-TTC
T ss_pred CCHHHHHHHHCcCHHHHHHHHH-CCC
Confidence 5789999999999999997755 454
No 82
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=87.37 E-value=0.49 Score=30.70 Aligned_cols=22 Identities=14% Similarity=0.212 Sum_probs=20.5
Q ss_pred CCcHHHHHHHcCCChhHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKIC 102 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~C 102 (160)
+++..|+|+.||||..+++++-
T Consensus 30 ~~s~~eIA~~l~is~~tV~~~~ 51 (73)
T 1ku3_A 30 EHTLEEVGAYFGVTRERIRQIE 51 (73)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHH
Confidence 6999999999999999999875
No 83
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=87.29 E-value=0.42 Score=32.45 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=20.6
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRR 104 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~ 104 (160)
+.++.++|+.|||+.++|.+..++
T Consensus 38 g~s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 38 GESKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 589999999999999999887543
No 84
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=87.28 E-value=0.76 Score=36.04 Aligned_cols=41 Identities=10% Similarity=0.050 Sum_probs=30.1
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHcCCCCChhHHHhhHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKIKSIQRR 121 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWPyRkikSl~~~ 121 (160)
.+++.+.|+.+|||++.|.|.+++.|++--=|-.-..+++.
T Consensus 185 ~~sl~~lA~~~~~S~~~l~r~fk~~G~t~~~~l~~~Rl~~A 225 (276)
T 3gbg_A 185 NWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYS 225 (276)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999877753223333333333
No 85
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=87.28 E-value=0.52 Score=31.90 Aligned_cols=27 Identities=19% Similarity=0.439 Sum_probs=24.5
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc-CC
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD-GL 107 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~-GI 107 (160)
-|+++|||.-||||.++|.++.++. +.
T Consensus 16 ~LTi~EaAeylgIg~~~l~~L~~~~~~~ 43 (70)
T 1y6u_A 16 TLTIEEASKYFRIGENKLRRLAEENKNA 43 (70)
T ss_dssp EEEHHHHHHHTCSCHHHHHHHHHHCTTC
T ss_pred eeCHHHHHHHHCcCHHHHHHHHHcCCCC
Confidence 4899999999999999999999986 44
No 86
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=87.24 E-value=0.76 Score=30.79 Aligned_cols=24 Identities=29% Similarity=0.309 Sum_probs=20.9
Q ss_pred hcCCcHHHHHHHcCCChhHHHHHH
Q 041600 79 YFHLPIEEAARRMKLCPTVVKKIC 102 (160)
Q Consensus 79 yF~lP~~eAA~~Lgv~~T~LKr~C 102 (160)
+-+++.+|+|+.||||..++++..
T Consensus 34 ~~g~s~~eIA~~l~is~~tV~~~l 57 (82)
T 1je8_A 34 AQGLPNKMIARRLDITESTVKVHV 57 (82)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 457999999999999999988764
No 87
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=86.57 E-value=1.7 Score=29.58 Aligned_cols=30 Identities=7% Similarity=0.214 Sum_probs=26.2
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHH
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKIC 102 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~C 102 (160)
+..++.-.++++.+.|+.+|||.+++-++-
T Consensus 23 l~~~r~~~gltq~~lA~~~gis~~~is~~e 52 (104)
T 3cec_A 23 IADILDDLDINTANFAEILGVSNQTIQEVI 52 (104)
T ss_dssp HHHHHHHHTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 566777789999999999999999999984
No 88
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=86.55 E-value=1.6 Score=32.26 Aligned_cols=35 Identities=17% Similarity=0.065 Sum_probs=30.3
Q ss_pred CCHHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCC
Q 041600 71 LTLRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGL 107 (160)
Q Consensus 71 lt~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI 107 (160)
-.+..++.-.++++.++|+.+|||.+++.++- .|-
T Consensus 71 ~~L~~~R~~~glTq~elA~~lGis~s~is~~E--~G~ 105 (141)
T 3kxa_A 71 ETFVSLRMKKGFTQSELATAAGLPQPYLSRIE--NSK 105 (141)
T ss_dssp CCHHHHHHHTTCCHHHHHHHTTCCHHHHHHHH--HTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH--cCC
Confidence 45777888999999999999999999999994 454
No 89
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=86.08 E-value=1.6 Score=32.63 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=28.7
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCCC
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLH 108 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~ 108 (160)
+..++.--++.+++.|+.+|||.+++.++ +.|-.
T Consensus 16 l~~~r~~~gltq~~lA~~~gis~~~is~~--e~g~~ 49 (192)
T 1y9q_A 16 LKNLRKSRGLSLDATAQLTGVSKAMLGQI--ERGES 49 (192)
T ss_dssp HHHHHHHTTCCHHHHHHHHSSCHHHHHHH--HTTCS
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHH--HcCCC
Confidence 56677778999999999999999999999 45643
No 90
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=85.99 E-value=0.84 Score=36.00 Aligned_cols=96 Identities=13% Similarity=0.062 Sum_probs=59.5
Q ss_pred CCceeecCchhHHHHHhhcc-----cccCCCCCCCC--CCCCCCCchhhhhccCCCCHHHHHhhcCCcHHHHHHHcCCCh
Q 041600 23 AGFMMLPDPLSDFYEAVCVG-----LVLDDNLTTDD--YSQPPMTNSVQRERTGKLTLRDLMIYFHLPIEEAARRMKLCP 95 (160)
Q Consensus 23 ~g~~~~qd~~s~f~~alc~~-----~~~~~~~~~d~--~~~ps~s~s~~r~r~~~lt~~~L~~yF~lP~~eAA~~Lgv~~ 95 (160)
.-|.-++| -+||...-++ +.|++++ .+. .... ...+..-...-.+.+|+.-.+++++++|+.||||.
T Consensus 44 ~~F~~LkD--~~~F~~v~V~~~g~tV~W~~g~-iaPd~LY~~---~~~~~~~~s~~~lk~lR~~~glTQ~elA~~LGvsr 117 (170)
T 2auw_A 44 PDLAPILD--PEAFARVHIAEWEGSVEWFDTE-FGRDNVYAW---AKEQAGEVSHEMFGDWMHRNNLSLTTAAEALGISR 117 (170)
T ss_dssp GGGGGGGS--HHHHTTCEECTTTCCEESSSCC-BCHHHHHHH---HHHHTTCCCHHHHHHHHHHTTCCHHHHHHHHTSCH
T ss_pred chhhhhcC--HHHhCcEEEcCCCCEEEcCCCC-CCHHHHHHh---hhhhccCCCcHHHHHHHHHcCCCHHHHHHHhCCCH
Confidence 45666777 3466666554 6887776 431 1000 00111111122377888999999999999999999
Q ss_pred hHHHHHHHHcCCCCChhHHHhhHHHHHHHHhh
Q 041600 96 TVVKKICRRDGLHRWPHRKIKSIQRRMSVASG 127 (160)
Q Consensus 96 T~LKr~CR~~GI~RWPyRkikSl~~~i~~L~~ 127 (160)
+++-++ +.|...-|.--+-...- ++.++.
T Consensus 118 ~tis~y--E~G~r~iP~~~~lac~~-~~~~~~ 146 (170)
T 2auw_A 118 RMVSYY--RTAHKIIPRTIWLACLG-WEATRP 146 (170)
T ss_dssp HHHHHH--HTTSSCCCHHHHHHHHH-HHHTCS
T ss_pred HHHHHH--HcCCCCCCHHHHHHHHH-HHhhcc
Confidence 999998 77875577554333332 566554
No 91
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=85.83 E-value=1.3 Score=33.31 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=22.2
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHcCCC
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRDGLH 108 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~GI~ 108 (160)
.+++.|+|+.+|||+.||+..-+ .|+-
T Consensus 16 ~~~I~evA~~~gvs~~tLR~Ye~-~Gll 42 (148)
T 3gpv_A 16 YYTIGQVAKMQHLTISQIRYYDK-QGLF 42 (148)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHH-TTCC
T ss_pred ceeHHHHHHHHCcCHHHHHHHHH-CCCC
Confidence 38999999999999999997654 4543
No 92
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=85.81 E-value=1.5 Score=32.96 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=21.1
Q ss_pred cCCcHHHHHHHcCCChhHHHHHH
Q 041600 80 FHLPIEEAARRMKLCPTVVKKIC 102 (160)
Q Consensus 80 F~lP~~eAA~~Lgv~~T~LKr~C 102 (160)
-+++.+|+|+.||||..+++++-
T Consensus 202 ~g~s~~EIA~~lgis~~~V~~~~ 224 (239)
T 1rp3_A 202 EELPAKEVAKILETSVSRVSQLK 224 (239)
T ss_dssp SCCCHHHHHHHTTSCHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHH
Confidence 37999999999999999999885
No 93
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=85.63 E-value=0.98 Score=28.24 Aligned_cols=31 Identities=10% Similarity=0.149 Sum_probs=26.0
Q ss_pred CHHHHHhhcCCcHHHHHHHcCCChhHHHHHHH
Q 041600 72 TLRDLMIYFHLPIEEAARRMKLCPTVVKKICR 103 (160)
Q Consensus 72 t~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR 103 (160)
.+..+..-.+ .+.++|+.|||+.+++-++.|
T Consensus 5 ~l~~~~~~~g-s~~~~A~~lgis~~~vs~~~~ 35 (67)
T 2pij_A 5 PLSKYLEEHG-TQSALAAALGVNQSAISQMVR 35 (67)
T ss_dssp EHHHHHHHTC-CHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHcC-CHHHHHHHHCcCHHHHHHHHc
Confidence 3555666677 999999999999999999875
No 94
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=85.63 E-value=0.64 Score=34.75 Aligned_cols=33 Identities=21% Similarity=0.187 Sum_probs=27.9
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
+..|+.-.-+|..+.|+.||+|.+++.++-+++
T Consensus 9 l~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L 41 (162)
T 3i4p_A 9 LRILQEDSTLAVADLAKKVGLSTTPCWRRIQKM 41 (162)
T ss_dssp HHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 345666677999999999999999999888776
No 95
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=85.62 E-value=0.89 Score=30.47 Aligned_cols=35 Identities=14% Similarity=0.263 Sum_probs=27.9
Q ss_pred CCCCHHHHHhhc---CCcHHHHHHHcCCChhHHHHHHH
Q 041600 69 GKLTLRDLMIYF---HLPIEEAARRMKLCPTVVKKICR 103 (160)
Q Consensus 69 ~~lt~~~L~~yF---~lP~~eAA~~Lgv~~T~LKr~CR 103 (160)
.+...++|.... ++++.+.|+.+|||.++|.+...
T Consensus 7 ~~~~~~ri~~~l~~~glT~~~LA~~~Gvs~stls~~~~ 44 (74)
T 1neq_A 7 RDWHRADVIAGLKKRKLSLSALSRQFGYAPTTLANALE 44 (74)
T ss_dssp SSCCHHHHHHHHHTTSCCHHHHHHHHSSCHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 356666666443 79999999999999999998854
No 96
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=85.59 E-value=0.79 Score=29.54 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=20.8
Q ss_pred hcCCcHHHHHHHcCCChhHHHHHH
Q 041600 79 YFHLPIEEAARRMKLCPTVVKKIC 102 (160)
Q Consensus 79 yF~lP~~eAA~~Lgv~~T~LKr~C 102 (160)
+.+++.+|+|+.||||..+++...
T Consensus 29 ~~g~s~~eIA~~l~is~~tV~~~~ 52 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEVHR 52 (79)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 447999999999999999888664
No 97
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=85.14 E-value=1.4 Score=30.74 Aligned_cols=33 Identities=9% Similarity=0.034 Sum_probs=27.9
Q ss_pred HHHHHh--hcCCcHHHHHHHcCCChhHHHHHHHHcCC
Q 041600 73 LRDLMI--YFHLPIEEAARRMKLCPTVVKKICRRDGL 107 (160)
Q Consensus 73 ~~~L~~--yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI 107 (160)
+..++. ..++.+.+.|+.+||+.+++.++ +.|-
T Consensus 39 lk~~R~~~~~glsq~elA~~~gis~~~is~~--E~G~ 73 (107)
T 2jvl_A 39 IEQGRQKFEPTMTQAELGKEIGETAATVASY--ERGT 73 (107)
T ss_dssp HHHHHTTSSSCCCHHHHHHHHTCCHHHHHHH--TTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHH--HcCC
Confidence 566777 78899999999999999999998 4554
No 98
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=85.13 E-value=2.3 Score=28.66 Aligned_cols=33 Identities=12% Similarity=0.128 Sum_probs=26.4
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhH----HHHHHHHcCC
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTV----VKKICRRDGL 107 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~----LKr~CR~~GI 107 (160)
+..++.--++++.+.|+.+||+.++ +.++ +.|-
T Consensus 6 lk~~R~~~glsq~~lA~~~gis~~~~~~~is~~--E~g~ 42 (98)
T 3lfp_A 6 LKDARLRAGISQEKLGVLAGIDEASASARMNQY--EKGK 42 (98)
T ss_dssp HHHHHHHHTCCHHHHHHHTTCCHHHHHHHHHHH--HHTS
T ss_pred HHHHHHHcCCCHHHHHHHhCCCcchhhhHHHHH--HCCC
Confidence 4566777889999999999999998 7777 4454
No 99
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=85.00 E-value=0.73 Score=31.08 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=20.2
Q ss_pred CCcHHHHHHHcCCChhHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKIC 102 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~C 102 (160)
+++.+|+|+.||||..+++.+-
T Consensus 38 ~~s~~EIA~~lgis~~tV~~~~ 59 (87)
T 1tty_A 38 PKTLEEVGQYFNVTRERIRQIE 59 (87)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHH
Confidence 5999999999999999999873
No 100
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=84.98 E-value=0.7 Score=29.24 Aligned_cols=23 Identities=13% Similarity=0.109 Sum_probs=19.8
Q ss_pred cCCcHHHHHHHcCCChhHHHHHH
Q 041600 80 FHLPIEEAARRMKLCPTVVKKIC 102 (160)
Q Consensus 80 F~lP~~eAA~~Lgv~~T~LKr~C 102 (160)
-+++.+|+|+.||+|.+++++.-
T Consensus 25 ~g~s~~eIA~~l~is~~tV~~~~ 47 (74)
T 1fse_A 25 QDKTTKEIASELFISEKTVRNHI 47 (74)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHH
Confidence 36899999999999998887664
No 101
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=84.57 E-value=1.8 Score=32.42 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=28.6
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCCC
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLH 108 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~ 108 (160)
+..++.-.++.+++.|+.+|||.++|.++ +.|..
T Consensus 15 l~~~r~~~g~s~~~la~~~gis~~~ls~~--e~g~~ 48 (198)
T 2bnm_A 15 LKDRREQVKMDHAALASLLGETPETVAAW--ENGEG 48 (198)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHH--HTTTC
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHH--HcCCC
Confidence 56677888999999999999999999999 45543
No 102
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=84.56 E-value=0.49 Score=34.70 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=21.4
Q ss_pred hcCCcHHHHHHHcCCChhHHHHHH
Q 041600 79 YFHLPIEEAARRMKLCPTVVKKIC 102 (160)
Q Consensus 79 yF~lP~~eAA~~Lgv~~T~LKr~C 102 (160)
+-+++.+|+|+.||||+.++|..-
T Consensus 107 ~~g~s~~EIA~~lgis~~tV~~~l 130 (157)
T 2lfw_A 107 MEGFSPEDAAYLIEVDTSEVETLV 130 (157)
T ss_dssp SSCCCHHHHHHTTTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 347999999999999999999874
No 103
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=84.35 E-value=0.71 Score=31.47 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=22.6
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
++++.++|+.||||.+|+.+..+++
T Consensus 33 g~s~~~ia~~lgis~~Tv~~w~~~~ 57 (128)
T 1pdn_C 33 GIRPCVISRQLRVSHGCVSKILNRY 57 (128)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 6899999999999999999887764
No 104
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=84.26 E-value=1.9 Score=29.64 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=22.0
Q ss_pred HHhhcCCcHHHHHHHcCCChhHHHHHH
Q 041600 76 LMIYFHLPIEEAARRMKLCPTVVKKIC 102 (160)
Q Consensus 76 L~~yF~lP~~eAA~~Lgv~~T~LKr~C 102 (160)
++...++++.+.|+.+|||.+++.++.
T Consensus 19 ~r~~~glsq~~lA~~~gis~~~is~~e 45 (113)
T 2eby_A 19 YLEPLDLKINELAELLHVHRNSVSALI 45 (113)
T ss_dssp TTTTTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 556668899999999999988888774
No 105
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=84.00 E-value=0.68 Score=32.49 Aligned_cols=25 Identities=8% Similarity=0.280 Sum_probs=22.8
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
+++..++|+.||||.+|+.+..+++
T Consensus 22 G~s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 22 NVSLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHSG
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHcc
Confidence 6899999999999999999988764
No 106
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=83.99 E-value=2.8 Score=33.55 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=21.5
Q ss_pred cCCcHHHHHHHcCCChhHHHHHHHH
Q 041600 80 FHLPIEEAARRMKLCPTVVKKICRR 104 (160)
Q Consensus 80 F~lP~~eAA~~Lgv~~T~LKr~CR~ 104 (160)
-++++.|+|+.||||.+++-|.-+.
T Consensus 23 ~g~tQ~eIA~~lGiSr~~VSR~L~~ 47 (192)
T 1zx4_A 23 DGMSQKDIAAKEGLSQAKVTRALQA 47 (192)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 4799999999999999999887543
No 107
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=83.90 E-value=0.6 Score=30.33 Aligned_cols=26 Identities=8% Similarity=0.051 Sum_probs=22.8
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHcCC
Q 041600 82 LPIEEAARRMKLCPTVVKKICRRDGL 107 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~CR~~GI 107 (160)
+.+.|+|+.||||.+|+-+..++-.+
T Consensus 11 l~~~eva~~lgvsrstiy~~~~~g~f 36 (66)
T 1z4h_A 11 VDLKFIMADTGFGKTFIYDRIKSGDL 36 (66)
T ss_dssp ECHHHHHHHHSSCHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCCCC
Confidence 78999999999999999999876444
No 108
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=83.89 E-value=0.99 Score=30.52 Aligned_cols=24 Identities=0% Similarity=0.044 Sum_probs=20.2
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRR 104 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~ 104 (160)
.++..|.|+.|||+.+++.+.-.+
T Consensus 31 ~~t~~eLA~~Lgvs~~tV~~~L~~ 54 (77)
T 1qgp_A 31 ATTAHDLSGKLGTPKKEINRVLYS 54 (77)
T ss_dssp CEEHHHHHHHHCCCHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHH
Confidence 589999999999999998877443
No 109
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=83.79 E-value=2 Score=31.01 Aligned_cols=34 Identities=21% Similarity=0.204 Sum_probs=29.1
Q ss_pred CHHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCC
Q 041600 72 TLRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGL 107 (160)
Q Consensus 72 t~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI 107 (160)
.+..++...++++.++|+.+||+.+++-++ +.|-
T Consensus 44 ~L~~~R~~~glTQ~eLA~~lGis~~~Is~i--E~G~ 77 (120)
T 2o38_A 44 ALNAVIDRARLSQAAAAARLGINQPKVSAL--RNYK 77 (120)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHH--HTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHH--HcCC
Confidence 466777888999999999999999999999 4564
No 110
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=83.41 E-value=1.1 Score=33.12 Aligned_cols=33 Identities=21% Similarity=0.147 Sum_probs=26.0
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
+..|+....+|..|.|+.||+|.+++.++.+++
T Consensus 16 l~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L 48 (162)
T 2p5v_A 16 LQVLQENGRLTNVELSERVALSPSPCLRRLKQL 48 (162)
T ss_dssp HHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 344556667999999999999999988876643
No 111
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=83.24 E-value=1.3 Score=30.58 Aligned_cols=30 Identities=3% Similarity=-0.047 Sum_probs=22.9
Q ss_pred HHHHhhc---CCcHHHHHHHcCCChhHHHHHHH
Q 041600 74 RDLMIYF---HLPIEEAARRMKLCPTVVKKICR 103 (160)
Q Consensus 74 ~~L~~yF---~lP~~eAA~~Lgv~~T~LKr~CR 103 (160)
+.|...= .++..+.|+.|||+.+++.+.-.
T Consensus 17 ~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~ 49 (81)
T 1qbj_A 17 KFLEELGEGKATTAHDLSGKLGTPKKEINRVLY 49 (81)
T ss_dssp HHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 3444444 58999999999999999887743
No 112
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=83.20 E-value=3 Score=29.30 Aligned_cols=31 Identities=16% Similarity=0.256 Sum_probs=25.7
Q ss_pred HHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCC
Q 041600 75 DLMIYFHLPIEEAARRMKLCPTVVKKICRRDGL 107 (160)
Q Consensus 75 ~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI 107 (160)
+++.-.++++.+.|+.+|||.+++-++- .|-
T Consensus 21 ~lr~~~gltq~eLA~~lGis~~~is~ie--~G~ 51 (104)
T 3trb_A 21 ELGFLDKMSANQLAKHLAIPTNRVTAIL--NGA 51 (104)
T ss_dssp HHHHTTSCCHHHHHHHHTSCHHHHHHHH--TTS
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHH--cCC
Confidence 3667778999999999999999999884 554
No 113
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=83.10 E-value=1.1 Score=31.73 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=28.8
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCC
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGL 107 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI 107 (160)
+..++.--+|.+++.|+.+|||.+++.++ +.|-
T Consensus 41 ir~~R~~~glTQ~eLA~~~gvs~~~is~~--E~G~ 73 (101)
T 4ghj_A 41 LKQARLNRDLTQSEVAEIAGIARKTVLNA--EKGK 73 (101)
T ss_dssp HHHHHHHTTCCHHHHHHHHTSCHHHHHHH--HTTC
T ss_pred HHHHHHHcCCCHHHHHHHcCCCHHHHHHH--HCCC
Confidence 55667778999999999999999999999 7784
No 114
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=82.74 E-value=1.1 Score=35.37 Aligned_cols=51 Identities=8% Similarity=0.075 Sum_probs=37.5
Q ss_pred HHhhc--CCcHHHHHHHcCCChhHHHHHHHHc-CCCCChhHHHhhHHHHHHHHh
Q 041600 76 LMIYF--HLPIEEAARRMKLCPTVVKKICRRD-GLHRWPHRKIKSIQRRMSVAS 126 (160)
Q Consensus 76 L~~yF--~lP~~eAA~~Lgv~~T~LKr~CR~~-GI~RWPyRkikSl~~~i~~L~ 126 (160)
|..++ .+++.+.|+.+|+|+.+|.|++++. |++--=|.+...+++....|.
T Consensus 12 i~~~~~~~~~~~~la~~~~~s~~~l~r~f~~~~g~s~~~~~~~~Rl~~a~~~L~ 65 (292)
T 1d5y_A 12 LEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALR 65 (292)
T ss_dssp HHTTSSSSCCCHHHHTTTSSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 34444 4889999999999999999999987 886444555555555555554
No 115
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=82.48 E-value=1.3 Score=31.73 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=28.6
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCC
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGL 107 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI 107 (160)
+..++.--++++.++|+.+||+.++|.++ +.|-
T Consensus 12 Lr~~R~~~glSq~eLA~~~gis~~~is~i--E~G~ 44 (112)
T 2wus_R 12 FRKKREERRITLLDASLFTNINPSKLKRI--EEGD 44 (112)
T ss_dssp HHHHHHTTTCCHHHHHHHSSCCHHHHHHH--HHTC
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHH--HCCC
Confidence 55677788999999999999999999999 5664
No 116
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=82.12 E-value=1.3 Score=33.66 Aligned_cols=33 Identities=21% Similarity=0.148 Sum_probs=26.7
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
+..|+..-.+|..|.|+.||+|.+++.++.+++
T Consensus 23 L~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L 55 (171)
T 2ia0_A 23 LRLLKKDARLTISELSEQLKKPESTIHFRIKKL 55 (171)
T ss_dssp HHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 445556667999999999999999998887654
No 117
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=82.06 E-value=1.3 Score=33.71 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=26.2
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
+..|+..--+|..|.|+.||+|.+++.++.+++
T Consensus 33 L~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L 65 (171)
T 2e1c_A 33 IKILQNDGKAPLREISKITGLAESTIHERIRKL 65 (171)
T ss_dssp HHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 334455567999999999999999998877654
No 118
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=81.89 E-value=1.4 Score=32.16 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=25.3
Q ss_pred HHHHhhcCCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 74 RDLMIYFHLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 74 ~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
..|+..-.+|..+.|+.||+|.+++.++.+++
T Consensus 14 ~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L 45 (151)
T 2cyy_A 14 KILQNDGKAPLREISKITGLAESTIHERIRKL 45 (151)
T ss_dssp HHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34555557999999999999999988876644
No 119
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=81.79 E-value=1.3 Score=30.50 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=26.8
Q ss_pred hccCCCCHHHHH----hhcCCcHHHHHHHcCCChhHHHH----HHHHcCC
Q 041600 66 ERTGKLTLRDLM----IYFHLPIEEAARRMKLCPTVVKK----ICRRDGL 107 (160)
Q Consensus 66 ~r~~~lt~~~L~----~yF~lP~~eAA~~Lgv~~T~LKr----~CR~~GI 107 (160)
.....||-.+.. -+-+++.+|+|+.||||..|++. +.+++|+
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv 74 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNV 74 (90)
T ss_dssp ----CCCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred ccccCCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 344556666554 22379999999999999877665 4445554
No 120
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=81.69 E-value=2.7 Score=31.14 Aligned_cols=59 Identities=17% Similarity=0.255 Sum_probs=40.0
Q ss_pred HHcCCChhHHHHHHHHcCCCCChhHHHhhH-HHHHHHHhhhccC--CcHHHHHHHHHHHHHHHH
Q 041600 89 RRMKLCPTVVKKICRRDGLHRWPHRKIKSI-QRRMSVASGRLRS--NDAEERANAQIEIQRLQE 149 (160)
Q Consensus 89 ~~Lgv~~T~LKr~CR~~GI~RWPyRkikSl-~~~i~~L~~~~~~--~~~eerar~~~eIerL~~ 149 (160)
.--||+.++=+.+|+++||. |..++..| +.+++.|...+.+ -..+=+....+.|++|.+
T Consensus 20 ~I~GIG~~~A~~I~~~~gid--~~~r~~~Lt~~ei~~l~~~i~~~~ie~dLr~~~~~dI~RL~~ 81 (114)
T 3r8n_M 20 SIYGVGKTRSKAILAAAGIA--EDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMD 81 (114)
T ss_dssp GSTTCCHHHHHHHHHHTTCC--TTCCSTTCCHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHH
T ss_pred hhcCcCHHHHHHHHHHcCcC--cccCcccCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 45699999999999999995 34455544 2345555555533 245556677888888764
No 121
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=81.69 E-value=3.1 Score=27.46 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=19.6
Q ss_pred CcHHHHHHHcCCChhHHHHHHH
Q 041600 82 LPIEEAARRMKLCPTVVKKICR 103 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~CR 103 (160)
+++.|+|+.+|||.+|+-++..
T Consensus 10 ~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 10 ATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp CCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 6899999999999999998864
No 122
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=81.53 E-value=0.29 Score=37.42 Aligned_cols=34 Identities=12% Similarity=0.068 Sum_probs=0.0
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHcCCCCChhHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRK 114 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWPyRk 114 (160)
+++..++|+.||||.+|+.|..+..+-.++|-++
T Consensus 158 G~s~~~Ia~~l~vs~~Tvyr~l~~~~~~~~~~~~ 191 (193)
T 3uj3_X 158 GIPRKQVALIYDVALSTLYKKHPAKRAHIENDDR 191 (193)
T ss_dssp ----------------------------------
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHhhhcCCCCCC
Confidence 5799999999999999999998887766666443
No 123
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=81.50 E-value=1.9 Score=35.80 Aligned_cols=46 Identities=7% Similarity=0.153 Sum_probs=36.7
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc-CCCCChhHHHhhHHHHHHHHh
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD-GLHRWPHRKIKSIQRRMSVAS 126 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~-GI~RWPyRkikSl~~~i~~L~ 126 (160)
.+++.+.|+.+|+|.++|.|++++. |++--=|.+...+++...-|.
T Consensus 321 ~~~~~~~a~~~~~s~~~l~r~f~~~~g~s~~~~~~~~r~~~a~~~L~ 367 (412)
T 4fe7_A 321 GIKVDQVLDAVGISRSNLEKRFKEEVGETIHAMIHAEKLEKARSLLI 367 (412)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999998 986544666666666555553
No 124
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=81.22 E-value=1.3 Score=32.07 Aligned_cols=32 Identities=13% Similarity=0.178 Sum_probs=24.9
Q ss_pred HHHHhhcCCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 74 RDLMIYFHLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 74 ~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
..|+..-.+|..+.|+.||+|.+++.++-+++
T Consensus 10 ~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L 41 (150)
T 2pn6_A 10 KILQYNAKYSLDEIAREIRIPKATLSYRIKKL 41 (150)
T ss_dssp HHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34445556999999999999999988776644
No 125
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=80.77 E-value=1.8 Score=31.39 Aligned_cols=31 Identities=13% Similarity=0.049 Sum_probs=24.7
Q ss_pred HHHHhhcCCcHHHHHHHcCCChhHHHHHHHH
Q 041600 74 RDLMIYFHLPIEEAARRMKLCPTVVKKICRR 104 (160)
Q Consensus 74 ~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~ 104 (160)
..|+..=.+|..|.|+.||+|.+++.++.++
T Consensus 16 ~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~ 46 (151)
T 2dbb_A 16 KILSENSRLTYRELADILNTTRQRIARRIDK 46 (151)
T ss_dssp HHHHHCTTCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3344444699999999999999998887765
No 126
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=80.46 E-value=0.39 Score=35.10 Aligned_cols=24 Identities=21% Similarity=0.084 Sum_probs=21.5
Q ss_pred hcCCcHHHHHHHcCCChhHHHHHH
Q 041600 79 YFHLPIEEAARRMKLCPTVVKKIC 102 (160)
Q Consensus 79 yF~lP~~eAA~~Lgv~~T~LKr~C 102 (160)
+-+++.+|+|+.||||+.++|++-
T Consensus 149 ~~g~s~~eIA~~lgis~~tV~~~l 172 (184)
T 2q1z_A 149 FGDLTHRELAAETGLPLGTIKSRI 172 (184)
T ss_dssp HSCCSSCCSTTTCCCCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 347999999999999999999885
No 127
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=80.05 E-value=1.8 Score=30.78 Aligned_cols=31 Identities=23% Similarity=0.229 Sum_probs=24.0
Q ss_pred HHHhhcCCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 75 DLMIYFHLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 75 ~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.|+..=.+|..+.|+.||+|.+++.+..+++
T Consensus 12 ~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L 42 (141)
T 1i1g_A 12 ILEKDARTPFTEIAKKLGISETAVRKRVKAL 42 (141)
T ss_dssp HHHHCTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3443335899999999999999998877643
No 128
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=79.62 E-value=1.2 Score=32.13 Aligned_cols=25 Identities=20% Similarity=0.442 Sum_probs=21.7
Q ss_pred CCc-HHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLP-IEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP-~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.+| ..+.|+.||||.+++.+..++|
T Consensus 36 ~Lps~~~La~~~~vSr~tvr~Al~~L 61 (125)
T 3neu_A 36 KLPSVREMGVKLAVNPNTVSRAYQEL 61 (125)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 477 9999999999999999887654
No 129
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=79.28 E-value=0.79 Score=31.65 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=21.7
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHc
Q 041600 82 LPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.++.++|+.+||++++|.+..+++
T Consensus 31 ~s~~~va~~~gIs~~tl~~W~~~~ 54 (108)
T 2rn7_A 31 ATICSIAPKIGCTPETLRVWVRQH 54 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHHH
Confidence 689999999999999999887775
No 130
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=79.03 E-value=1.8 Score=29.60 Aligned_cols=22 Identities=14% Similarity=0.012 Sum_probs=18.5
Q ss_pred cCCcHHHHHHHcCCChhHHHHH
Q 041600 80 FHLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 80 F~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
+-....|+|+.||||++++.+-
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~ 44 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLY 44 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHH
Confidence 5577999999999998887655
No 131
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=78.97 E-value=9.1 Score=26.67 Aligned_cols=84 Identities=8% Similarity=0.090 Sum_probs=49.9
Q ss_pred CCCHHHHH------hhcCCcHHHHHHHcCCChhHHHHHHHHc---C-CCCChh---H-------------HHhhHHHHHH
Q 041600 70 KLTLRDLM------IYFHLPIEEAARRMKLCPTVVKKICRRD---G-LHRWPH---R-------------KIKSIQRRMS 123 (160)
Q Consensus 70 ~lt~~~L~------~yF~lP~~eAA~~Lgv~~T~LKr~CR~~---G-I~RWPy---R-------------kikSl~~~i~ 123 (160)
.+|..++. ..=.+++.++|+.||++.+++-+..+++ | |.|-|. | -+..+...+.
T Consensus 37 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~~~~~~~ 116 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAI 116 (148)
T ss_dssp TCCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHHHHHHTH
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHHHHHHHH
Confidence 55655544 2226889999999999988888877654 4 333321 1 1112222222
Q ss_pred HHh-hhccCCcHHHHHHHHHHHHHHHHHHHH
Q 041600 124 VAS-GRLRSNDAEERANAQIEIQRLQEEMAA 153 (160)
Q Consensus 124 ~L~-~~~~~~~~eerar~~~eIerL~~Em~~ 153 (160)
.+. ..+..-++++.+....-++++.+-+.+
T Consensus 117 ~~~~~~~~~l~~~e~~~l~~~l~~l~~~l~~ 147 (148)
T 3nrv_A 117 EREKQLLEEFEEAEKDQLFILLKKLRNKVDQ 147 (148)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc
Confidence 222 233445788888888888888776654
No 132
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=78.94 E-value=1.4 Score=31.79 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=22.5
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
++++.++|+.||||.+|+.+..+++
T Consensus 48 G~s~~~iA~~lgis~~TV~rw~~~~ 72 (149)
T 1k78_A 48 GVRPCDISRQLRVSHGCVSKILGRY 72 (149)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 6899999999999999999887763
No 133
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=78.89 E-value=1.7 Score=28.78 Aligned_cols=31 Identities=19% Similarity=0.451 Sum_probs=25.9
Q ss_pred CCHHHHHhhcCCcHHHHHHHcCCChhHHHHHHH
Q 041600 71 LTLRDLMIYFHLPIEEAARRMKLCPTVVKKICR 103 (160)
Q Consensus 71 lt~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR 103 (160)
+++.++.... .+.+||+.|||+.+++-+..|
T Consensus 5 ~~L~~~~~~~--s~t~aA~~L~vtQ~AVS~~ir 35 (66)
T 2ovg_A 5 ITLKDYAMRF--GQTKTAKDLGVYPSSINQAIH 35 (66)
T ss_dssp EEHHHHHHHH--CHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHC--CHHHHHHHhCCCHHHHHHHHH
Confidence 5677776655 899999999999999998875
No 134
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=78.78 E-value=2 Score=31.21 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=24.3
Q ss_pred HHHhhcCCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 75 DLMIYFHLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 75 ~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.|+..=.+|..|.|+.||+|.+++.++.+++
T Consensus 16 ~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L 46 (152)
T 2cg4_A 16 ALMGNARTAYAELAKQFGVSPETIHVRVEKM 46 (152)
T ss_dssp HHHHCTTSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444446899999999999999988877643
No 135
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=78.66 E-value=2 Score=31.07 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=25.3
Q ss_pred HHHhhcCCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 75 DLMIYFHLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 75 ~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.|+..=.+|..|.|+.||+|.+++.++.+++
T Consensus 13 ~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L 43 (144)
T 2cfx_A 13 ELKKDSRLSMRELGRKIKLSPPSVTERVRQL 43 (144)
T ss_dssp HHHHCSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444445899999999999999998888766
No 136
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=78.65 E-value=3.7 Score=32.48 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=19.9
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHc
Q 041600 82 LPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.+++|+|+..|||.+|+-|.-...
T Consensus 3 ~ti~dvA~~agVS~~TVSrvln~~ 26 (332)
T 2hsg_A 3 VTIYDVAREASVSMATVSRVVNGN 26 (332)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHTTC
T ss_pred CCHHHHHHHhCCCHHHHHHHHcCC
Confidence 478999999999999999886543
No 137
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=78.29 E-value=1.1 Score=30.23 Aligned_cols=24 Identities=17% Similarity=0.007 Sum_probs=20.7
Q ss_pred hcCCcHHHHHHHcCCChhHHHHHH
Q 041600 79 YFHLPIEEAARRMKLCPTVVKKIC 102 (160)
Q Consensus 79 yF~lP~~eAA~~Lgv~~T~LKr~C 102 (160)
+-+++.+|+|+.||||..++|..-
T Consensus 42 ~~g~s~~eIA~~l~is~~tV~~~l 65 (91)
T 2rnj_A 42 AKGYSNQEIASASHITIKTVKTHV 65 (91)
T ss_dssp HTTCCTTHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 457999999999999999888663
No 138
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=77.67 E-value=4.2 Score=32.34 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=20.0
Q ss_pred cHHHHHHHcCCChhHHHHHHHHc
Q 041600 83 PIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 83 P~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
+++|+|+..|||.+|+-|.-...
T Consensus 2 ti~diA~~agVS~~TVSrvLn~~ 24 (340)
T 1qpz_A 2 TIKDVAKRANVSTTTVSHVINKT 24 (340)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CHHHHHHHHCCCHHHHHHHHcCc
Confidence 68999999999999999987644
No 139
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=77.57 E-value=3.4 Score=25.48 Aligned_cols=31 Identities=13% Similarity=-0.004 Sum_probs=26.0
Q ss_pred HhhcCCcHHHHHHHc-----CCChhHHHHHHHHcCC
Q 041600 77 MIYFHLPIEEAARRM-----KLCPTVVKKICRRDGL 107 (160)
Q Consensus 77 ~~yF~lP~~eAA~~L-----gv~~T~LKr~CR~~GI 107 (160)
...=++.+.|.|+.| +||.+|+.|--.++|+
T Consensus 15 ~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~lg~ 50 (64)
T 2p5k_A 15 TSNEIETQDELVDMLKQDGYKVTQATVSRDIKELHL 50 (64)
T ss_dssp HHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHTC
T ss_pred HcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcCC
Confidence 344478999999999 9999999998887775
No 140
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=77.30 E-value=2.2 Score=30.94 Aligned_cols=33 Identities=12% Similarity=0.174 Sum_probs=27.3
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCC
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGL 107 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI 107 (160)
+.+++.--++++++.|+.+|||.+++.++ +.|-
T Consensus 8 lr~~R~~~gltq~elA~~~gis~~~is~i--E~g~ 40 (130)
T 3fym_A 8 LKGRRERLGMTLTELEQRTGIKREMLVHI--ENNE 40 (130)
T ss_dssp HHHHHHHTTCCHHHHHHHHCCCHHHHHHH--HTTC
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHH--HCCC
Confidence 55677778999999999999998888887 6664
No 141
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=77.21 E-value=1.7 Score=31.02 Aligned_cols=28 Identities=14% Similarity=0.422 Sum_probs=24.3
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHH-cCCC
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRR-DGLH 108 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~-~GI~ 108 (160)
++++.++|..+|+|++.|-|.+++ .|++
T Consensus 93 ~~sl~~lA~~~g~S~~~f~r~Fk~~~G~t 121 (133)
T 1u8b_A 93 PVTLEALADQVAMSPFHLHRLFKATTGMT 121 (133)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHTSSC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 489999999999999999999965 5664
No 142
>2lhr_A Iron-regulated surface determinant protein H; heme acquisition, iron uptake, NEAT domain, hemoglobin recep metal transport; NMR {Staphylococcus aureus subsp}
Probab=77.17 E-value=3.2 Score=29.05 Aligned_cols=44 Identities=16% Similarity=0.208 Sum_probs=35.2
Q ss_pred hhHHHhhHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHHH
Q 041600 111 PHRKIKSIQRRMSVASGRLRSNDAEERANAQIEIQRLQEEMAAA 154 (160)
Q Consensus 111 PyRkikSl~~~i~~L~~~~~~~~~eerar~~~eIerL~~Em~~~ 154 (160)
||+|-+.|.|+|-.|+..-+.-+..-|+.+...++..+.++++-
T Consensus 18 pY~KAKTLERqvYEL~kiqdkLPeklkaeYk~KL~~tk~~Ld~q 61 (78)
T 2lhr_A 18 PYHKAKTLERQVYELEKLQEKLPEKYKAEYKKKLDQTRVELADQ 61 (78)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999988877665555566788888888888777653
No 143
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=77.08 E-value=2.9 Score=27.52 Aligned_cols=24 Identities=8% Similarity=-0.112 Sum_probs=20.0
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRR 104 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~ 104 (160)
.++..|.|+.||||.+++.+....
T Consensus 14 ~~s~~eLa~~lgvs~~tv~r~L~~ 37 (81)
T 2htj_A 14 GGKTAEIAEALAVTDYQARYYLLL 37 (81)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 478999999999999998877543
No 144
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=77.07 E-value=2 Score=32.34 Aligned_cols=35 Identities=6% Similarity=-0.042 Sum_probs=27.8
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHcCCCCChhHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKI 115 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWPyRki 115 (160)
+++..|+|+.+|+|++|+-|..|.+.-.-=.||.+
T Consensus 75 G~syreIA~~~g~S~aTIsRv~r~L~~g~~gy~~~ 109 (119)
T 3kor_A 75 GYTYATIEQESGASTATISRVKRSLQWGNDAYTMI 109 (119)
T ss_dssp TCCHHHHHHHHCCCHHHHHHHHHHHHSSCSHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHhcCChHHHHH
Confidence 59999999999999999999987775543335443
No 145
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=76.66 E-value=5.2 Score=25.84 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=20.6
Q ss_pred cHHHHHHHcCCChhHHHHHHHHcCCC
Q 041600 83 PIEEAARRMKLCPTVVKKICRRDGLH 108 (160)
Q Consensus 83 P~~eAA~~Lgv~~T~LKr~CR~~GI~ 108 (160)
.+.+.|+.+||+.+++.++ +.|-.
T Consensus 29 sq~~lA~~~gis~~~is~~--E~g~~ 52 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKI--ETGRI 52 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHH--HTTCC
T ss_pred CHHHHHHHhCCCHHHHHHH--HcCCC
Confidence 8899999999999999998 45653
No 146
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=75.47 E-value=2.1 Score=30.98 Aligned_cols=27 Identities=15% Similarity=-0.010 Sum_probs=21.8
Q ss_pred HHHhhc--CCcHHHHHHHcCCChhHHHHH
Q 041600 75 DLMIYF--HLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 75 ~L~~yF--~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
-..-|| ++++.|+|++||||.+++-|+
T Consensus 26 ~A~lyYv~g~tQ~eIA~~lGiSR~~Vsrl 54 (101)
T 2w7n_A 26 IARGVLVDGKPQATFATSLGLTRGAVSQA 54 (101)
T ss_dssp HHHHHHTTCCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCCCHHHHHHH
Confidence 334555 699999999999998887766
No 147
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=75.43 E-value=1.7 Score=33.53 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=23.8
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHcCCC
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRDGLH 108 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~GI~ 108 (160)
++++.++|+.||||.+|+.|+.+..+..
T Consensus 175 G~s~~~Ia~~l~is~~tv~r~l~~~~~~ 202 (209)
T 2r0q_C 175 GQAISKIAKEVNITRQTVYRIKHDNGLS 202 (209)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHTTCC--
T ss_pred CCCHHHHHHHHCcCHHHHHHHHhccccc
Confidence 6899999999999999999998776653
No 148
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=74.86 E-value=2.3 Score=30.97 Aligned_cols=30 Identities=10% Similarity=0.142 Sum_probs=23.2
Q ss_pred hcCCcHHHHHHHcCCChhHHHHHHHHcCCC
Q 041600 79 YFHLPIEEAARRMKLCPTVVKKICRRDGLH 108 (160)
Q Consensus 79 yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~ 108 (160)
.-+....++|+.||+|.+++++...++++.
T Consensus 154 ~~~~~~~~ia~~l~is~~tv~~~l~~~~~~ 183 (184)
T 3rqi_A 154 ENNNNISATARALNMHRRTLQRKLAKKPVR 183 (184)
T ss_dssp HTTSCHHHHHHHHTSCHHHHHHHHCC----
T ss_pred hccccHHHHHHHcCCcHHHHHHHHHhcCCC
Confidence 337889999999999999999998888763
No 149
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=74.86 E-value=3 Score=30.20 Aligned_cols=31 Identities=26% Similarity=0.207 Sum_probs=24.0
Q ss_pred HHHhhcCCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 75 DLMIYFHLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 75 ~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.|+..=.++..|.|+.||+|.+++.++.+++
T Consensus 15 ~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L 45 (150)
T 2w25_A 15 ELAADGRATLSELATRAGLSVSAVQSRVRRL 45 (150)
T ss_dssp HHHHCTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3443335899999999999999988877643
No 150
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=74.78 E-value=1.9 Score=31.91 Aligned_cols=34 Identities=3% Similarity=-0.037 Sum_probs=27.2
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHcCCCCChhHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRK 114 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWPyRk 114 (160)
+++..++|+.+|+|.+|+.|+.|.+.-.-=.||.
T Consensus 58 G~SyreIa~~tG~StaTIsRv~r~L~~g~~gy~~ 91 (107)
T 3frw_A 58 KRTYLDISEKTGASTATISRVNRSLNYGNDGYEM 91 (107)
T ss_dssp TCCHHHHHHHHCCCHHHHHHHHHHHHHSCSHHHH
T ss_pred CCCHHHHHHHHCccHHHHHHHHHHHHccChHHHH
Confidence 6999999999999999999998776543333544
No 151
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=74.71 E-value=3.1 Score=27.04 Aligned_cols=23 Identities=9% Similarity=0.228 Sum_probs=19.9
Q ss_pred CcHHHHHHHcCCChhHHHHHHHH
Q 041600 82 LPIEEAARRMKLCPTVVKKICRR 104 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~CR~ 104 (160)
++..|.|+.|||+.+++-++...
T Consensus 26 ~s~~eLA~~lglsr~tv~~~l~~ 48 (67)
T 2heo_A 26 VAIFQLVKKCQVPKKTLNQVLYR 48 (67)
T ss_dssp EEHHHHHHHHCSCHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHH
Confidence 88999999999999998887544
No 152
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=74.65 E-value=1.4 Score=32.21 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=23.1
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
++++.++|+.||||.+|+.+..+++
T Consensus 41 G~s~~~IA~~lgis~~TV~rwl~r~ 65 (159)
T 2k27_A 41 GVRPCDISRQLRVSHGCVSKILGRY 65 (159)
T ss_dssp TCCHHHHHHHHTCCSHHHHHHHCCS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 6899999999999999999998875
No 153
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=74.61 E-value=2.4 Score=29.86 Aligned_cols=28 Identities=11% Similarity=0.156 Sum_probs=21.9
Q ss_pred cCCcHHHHHHHcCCChhHHHHH----HHHcCC
Q 041600 80 FHLPIEEAARRMKLCPTVVKKI----CRRDGL 107 (160)
Q Consensus 80 F~lP~~eAA~~Lgv~~T~LKr~----CR~~GI 107 (160)
-+++.+|+|+.||||..++|.. .+++|+
T Consensus 48 ~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv 79 (99)
T 1p4w_A 48 EGFLVTEIAKKLNRSIKTISSQKKSAMMKLGV 79 (99)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 4899999999999998886654 445555
No 154
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=74.53 E-value=4.7 Score=32.12 Aligned_cols=22 Identities=14% Similarity=0.332 Sum_probs=18.1
Q ss_pred CcHHHHHHHcCCChhHHHHHHH
Q 041600 82 LPIEEAARRMKLCPTVVKKICR 103 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~CR 103 (160)
.+++|+|+..|||.+|+-|.-+
T Consensus 11 ~ti~diA~~agVS~~TVSr~Ln 32 (344)
T 3kjx_A 11 LTLRDVSEASGVSEMTVSRVLR 32 (344)
T ss_dssp CCHHHHHHHHCCCSHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 5688899999999999888743
No 155
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=74.33 E-value=3 Score=29.08 Aligned_cols=27 Identities=7% Similarity=0.258 Sum_probs=23.8
Q ss_pred CCcHHHHHHHcC--CChhHHHHHHHHcCC
Q 041600 81 HLPIEEAARRMK--LCPTVVKKICRRDGL 107 (160)
Q Consensus 81 ~lP~~eAA~~Lg--v~~T~LKr~CR~~GI 107 (160)
.+...++|..|| ||.+++.++.+++|+
T Consensus 77 ~~s~~~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 77 CKTARDIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp CCCHHHHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHCCCccHHHHHHHHHHCCC
Confidence 477889999999 899999999999998
No 156
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=74.31 E-value=0.64 Score=34.45 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCCC
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLH 108 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~ 108 (160)
+..++..-++++.+.|+.+|||.+++.++ +.|..
T Consensus 6 lk~~R~~~gltq~elA~~lgis~~~vs~~--e~G~~ 39 (158)
T 2p5t_A 6 IKSLRKTHDLTQLEFARIVGISRNSLSRY--ENGTS 39 (158)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHH--HCCCC
Confidence 55677777999999999999999999988 66654
No 157
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=73.12 E-value=14 Score=26.09 Aligned_cols=13 Identities=15% Similarity=0.215 Sum_probs=7.8
Q ss_pred HHHHHHHHcCCCC
Q 041600 97 VVKKICRRDGLHR 109 (160)
Q Consensus 97 ~LKr~CR~~GI~R 109 (160)
+.+.++..+||+.
T Consensus 43 s~~EIA~~lgiS~ 55 (113)
T 1xsv_A 43 SLSEIADTFNVSR 55 (113)
T ss_dssp CHHHHHHHTTCCH
T ss_pred CHHHHHHHHCcCH
Confidence 3466666777643
No 158
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=72.23 E-value=2.5 Score=31.84 Aligned_cols=32 Identities=13% Similarity=0.233 Sum_probs=25.2
Q ss_pred HHHHHhhc--CCcHHHHHHHcCCChhHHHHHHHH
Q 041600 73 LRDLMIYF--HLPIEEAARRMKLCPTVVKKICRR 104 (160)
Q Consensus 73 ~~~L~~yF--~lP~~eAA~~Lgv~~T~LKr~CR~ 104 (160)
.+.+..++ +++..++|+.||||.+|+.|+.+.
T Consensus 148 ~~~i~~~~~~G~s~~~Ia~~l~is~~tv~r~l~~ 181 (183)
T 1gdt_A 148 RDAVLNMWQQGLGASHISKTMNIARSTVYKVINE 181 (183)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred HHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 34454444 689999999999999999998653
No 159
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=72.12 E-value=4.5 Score=26.52 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=22.2
Q ss_pred hhcCCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
..=.+++.+.|+.||++.+++-+..+++
T Consensus 31 ~~~~~s~~ela~~l~is~~tv~~~l~~L 58 (109)
T 1sfx_A 31 ERGGMRVSEIARELDLSARFVRDRLKVL 58 (109)
T ss_dssp HHCCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3335889999999999999988876644
No 160
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=71.95 E-value=2.4 Score=28.02 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=22.7
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.++..|.|+.|||+.+++-+..+++
T Consensus 36 ~~t~~ela~~l~is~~tv~~~l~~L 60 (109)
T 2d1h_A 36 PITSEELADIFKLSKTTVENSLKKL 60 (109)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5889999999999999999988877
No 161
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=71.61 E-value=2.4 Score=32.96 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=23.7
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHcCC
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRDGL 107 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~GI 107 (160)
-|++.|+|+.|||+.+++.++-|+.-+
T Consensus 31 ~LTv~EVAe~LgVs~srV~~LIr~G~L 57 (148)
T 2kfs_A 31 TYDLPRVAELLGVPVSKVAQQLREGHL 57 (148)
T ss_dssp EEEHHHHHHHHTCCHHHHHHHHHTTSC
T ss_pred eEcHHHHHHHhCCCHHHHHHHHHCCCc
Confidence 389999999999999999999886544
No 162
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=70.97 E-value=4.1 Score=32.77 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=19.5
Q ss_pred CcHHHHHHHcCCChhHHHHHHHH
Q 041600 82 LPIEEAARRMKLCPTVVKKICRR 104 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~CR~ 104 (160)
.+++|+|+..|||.+|+-|.-+.
T Consensus 10 ~Ti~diA~~aGVS~~TVSrvLn~ 32 (366)
T 3h5t_A 10 GTLASIAAKLGISRTTVSNAYNR 32 (366)
T ss_dssp THHHHHHHHHTSCHHHHHHHHHC
T ss_pred CCHHHHHHHhCCCHHHHHHHHCC
Confidence 56899999999999999988643
No 163
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=70.76 E-value=4.1 Score=27.12 Aligned_cols=15 Identities=7% Similarity=0.408 Sum_probs=13.3
Q ss_pred CcHHHHHHHcCCChh
Q 041600 82 LPIEEAARRMKLCPT 96 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T 96 (160)
|+..||...|||+.+
T Consensus 1 mt~~EA~~ILgv~~~ 15 (65)
T 2guz_B 1 MTLDESCKILNIEES 15 (65)
T ss_dssp CCHHHHHHHTTCCGG
T ss_pred CCHHHHHHHhCCCCC
Confidence 578899999999987
No 164
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=70.68 E-value=4.4 Score=28.40 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=19.1
Q ss_pred CcHHHHHHHcCCChhHHHHHHHH
Q 041600 82 LPIEEAARRMKLCPTVVKKICRR 104 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~CR~ 104 (160)
....++|+.|||+.++|.++.+.
T Consensus 26 ~~~~~~A~~~gvs~stl~~~~~~ 48 (131)
T 1hlv_A 26 LRKGEIARRFNIPPSTLSTILKN 48 (131)
T ss_dssp SCHHHHHHHHTCCHHHHHHHHHT
T ss_pred CcHHHHHHHhCCCHHHHHHHHhc
Confidence 44559999999999999888654
No 165
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=70.63 E-value=5.9 Score=27.31 Aligned_cols=55 Identities=16% Similarity=0.136 Sum_probs=38.2
Q ss_pred hhhhhccCCCCHHHHHhhc-----C-CcHHHHHHHcCCChhHHHHHHHHcC--CCCChhHHHh
Q 041600 62 SVQRERTGKLTLRDLMIYF-----H-LPIEEAARRMKLCPTVVKKICRRDG--LHRWPHRKIK 116 (160)
Q Consensus 62 s~~r~r~~~lt~~~L~~yF-----~-lP~~eAA~~Lgv~~T~LKr~CR~~G--I~RWPyRkik 116 (160)
...+.+-..-|-++|..-. + |.+..||+..||..+||-..-+... +.+=|.|+++
T Consensus 5 ~pk~~ryr~Yte~~L~~Ai~aVr~g~mS~~~Aak~yGVP~sTL~~RVk~~~~~~~~~~~~~~~ 67 (70)
T 2cob_A 5 SSGRGRYRQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMK 67 (70)
T ss_dssp CCCSSCSCCCCHHHHHHHHHHHHTTSSCHHHHHHHHTCCHHHHHHHHHHHTTTTSSCCCSCCC
T ss_pred CcccccccccCHHHHHHHHHHHHcCCccHHHHHHHhCCChHHHHHHHHhhcccccCCcccccC
Confidence 3445666667777776322 4 8999999999999999986665544 4555666553
No 166
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=70.25 E-value=5.3 Score=28.26 Aligned_cols=25 Identities=8% Similarity=0.110 Sum_probs=21.6
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.++..+.|+.+||+.+++.++.+.+
T Consensus 26 ~~s~~ela~~~~i~~~~v~~il~~L 50 (129)
T 2y75_A 26 PTSLKSIAQTNNLSEHYLEQLVSPL 50 (129)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3789999999999999999987754
No 167
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=70.08 E-value=5.3 Score=32.07 Aligned_cols=31 Identities=13% Similarity=0.028 Sum_probs=27.9
Q ss_pred hhcCCcHHHHHHHcCCChhHHHHHHHHcCCC
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKKICRRDGLH 108 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~ 108 (160)
..-++...+.|+.||||.+++.|+.+++|+.
T Consensus 83 ~~~~~t~~~ia~~l~vs~~tV~r~L~~~g~~ 113 (345)
T 3hot_A 83 EDDAQTQKQLAEQLEVSQQAVSNRLREMGKI 113 (345)
T ss_dssp HCSCCCHHHHHHHTTSCHHHHHHHHHHTTCE
T ss_pred hCccchHHHHHHHHCCCHHHHHHHHHHhCCe
Confidence 3447899999999999999999999999995
No 168
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=69.92 E-value=25 Score=24.53 Aligned_cols=77 Identities=12% Similarity=0.038 Sum_probs=48.2
Q ss_pred hhcCCcHHHHHHHcCCChhHHHHHHHHcCCCCChhH----------------------HHhhHHHHHHHH-hhhccCCcH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHR----------------------KIKSIQRRMSVA-SGRLRSNDA 134 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWPyR----------------------kikSl~~~i~~L-~~~~~~~~~ 134 (160)
..=.+++.+.|+.||++.+++-+...++-=..|=.| .+..+...+..+ ...+..-++
T Consensus 48 ~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~ 127 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKERKAIMSHIASDMTSDFDS 127 (151)
T ss_dssp HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHHHHHHHHHHHHHHTTTTSCH
T ss_pred HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 334688999999999998888777665432222222 122223333333 233445688
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041600 135 EERANAQIEIQRLQEEMAAA 154 (160)
Q Consensus 135 eerar~~~eIerL~~Em~~~ 154 (160)
+|.+....-++++.+-+.+.
T Consensus 128 ~e~~~l~~~l~~l~~~l~~~ 147 (151)
T 3kp7_A 128 KEIEKVRQVLEIIDYRIQSY 147 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888777653
No 169
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=69.79 E-value=17 Score=25.78 Aligned_cols=74 Identities=12% Similarity=0.092 Sum_probs=47.9
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc---C-CCCCh----------------hHHHhhHHHHHHHHhhh-ccCCcHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD---G-LHRWP----------------HRKIKSIQRRMSVASGR-LRSNDAEERAN 139 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~---G-I~RWP----------------yRkikSl~~~i~~L~~~-~~~~~~eerar 139 (160)
.+++.+.|+.|||+.+++-++..++ | |.|=| ..-+..+...+..+... +..-+++|.+.
T Consensus 64 ~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~ 143 (159)
T 3s2w_A 64 GINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPDMKKIASEWGEILFSSFDDRQRRE 143 (159)
T ss_dssp SEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5789999999999998888877654 4 33322 11122333333333332 34457888888
Q ss_pred HHHHHHHHHHHHHHH
Q 041600 140 AQIEIQRLQEEMAAA 154 (160)
Q Consensus 140 ~~~eIerL~~Em~~~ 154 (160)
...-++++.+-+.++
T Consensus 144 l~~~l~~l~~~l~~~ 158 (159)
T 3s2w_A 144 ITNSLEIMFENGLKI 158 (159)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc
Confidence 888888888877654
No 170
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=69.71 E-value=4.4 Score=28.65 Aligned_cols=23 Identities=13% Similarity=0.146 Sum_probs=20.3
Q ss_pred CCcHHHHHHHcCCChhHHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICR 103 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR 103 (160)
.+++.++|+.+|||.+|+.|...
T Consensus 20 ~~ti~dlA~~~gVS~~TVsR~L~ 42 (93)
T 2l0k_A 20 KKTVRVIAKEFGVSKSTVHKDLT 42 (93)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHc
Confidence 38999999999999999998854
No 171
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=69.65 E-value=2.5 Score=32.56 Aligned_cols=25 Identities=12% Similarity=0.105 Sum_probs=22.4
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.||..+.|+.||||.|+++..-++|
T Consensus 39 ~L~E~~La~~lgVSRtpVREAl~~L 63 (222)
T 3ihu_A 39 RLVETDLVAHFGVGRNSVREALQRL 63 (222)
T ss_dssp EECHHHHHHHHTCCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHCCCHHHHHHHHHHH
Confidence 6899999999999999999887765
No 172
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=69.38 E-value=9.1 Score=27.22 Aligned_cols=43 Identities=16% Similarity=0.236 Sum_probs=30.0
Q ss_pred CHHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCCCCChhHHHh
Q 041600 72 TLRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKIK 116 (160)
Q Consensus 72 t~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWPyRkik 116 (160)
-+.+|.. ++.+.+.|+..||+.+||-.|-+---.+.=||+.-+
T Consensus 25 kLK~il~--GikQ~eLAK~iGIsqsTLSaIenG~~~PsL~~kIAk 67 (83)
T 2l1p_A 25 ALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQ 67 (83)
T ss_dssp HHHHHHT--TSCHHHHHHHSSSCHHHHHHHHTCSSCCCCCSHHHH
T ss_pred HHHHHHH--hcCHHHHHHHcCCCHHHHHHHHcCCCCCCchHHHHH
Confidence 3566666 899999999999999999888433223344444333
No 173
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=69.25 E-value=2.9 Score=32.99 Aligned_cols=25 Identities=8% Similarity=0.082 Sum_probs=20.7
Q ss_pred cHHHHHHHcCCChhHHHHHHHHcCC
Q 041600 83 PIEEAARRMKLCPTVVKKICRRDGL 107 (160)
Q Consensus 83 P~~eAA~~Lgv~~T~LKr~CR~~GI 107 (160)
.+.+||+.||++.++|.+..++++|
T Consensus 266 ~~~~~a~~lgi~~~tl~~~l~~~~i 290 (324)
T 1hqc_A 266 GLATLATALSEDPGTLEEVHEPYLI 290 (324)
T ss_dssp CHHHHHHHTTSCHHHHHHHTHHHHH
T ss_pred hHHHHHHHhCCCHHHHHHHHhHHHH
Confidence 3999999999999999887666544
No 174
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=68.72 E-value=16 Score=25.15 Aligned_cols=30 Identities=30% Similarity=0.356 Sum_probs=22.5
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHc---C-CCCCh
Q 041600 82 LPIEEAARRMKLCPTVVKKICRRD---G-LHRWP 111 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~CR~~---G-I~RWP 111 (160)
+++.+.|+.||++.+++-+...++ | |.|-|
T Consensus 52 ~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 52 LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEecc
Confidence 899999999999988888777654 4 45545
No 175
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=68.35 E-value=5.7 Score=26.82 Aligned_cols=43 Identities=2% Similarity=0.014 Sum_probs=36.3
Q ss_pred hccCCCCHHHHHhhcCCcHHHHHHHc----CCChhHHHHHHHHcCCC
Q 041600 66 ERTGKLTLRDLMIYFHLPIEEAARRM----KLCPTVVKKICRRDGLH 108 (160)
Q Consensus 66 ~r~~~lt~~~L~~yF~lP~~eAA~~L----gv~~T~LKr~CR~~GI~ 108 (160)
.....+|..+|....+++...+.+-. .++..++.++|+.+|++
T Consensus 27 r~~~gltq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~l~~~l~v~ 73 (104)
T 3cec_A 27 LDDLDINTANFAEILGVSNQTIQEVINGQRSITVDIAIRLGKALGNG 73 (104)
T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSC
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcCCcCCCHHHHHHHHHHHCcC
Confidence 44567999999999999999998744 46788999999999994
No 176
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=68.17 E-value=3.7 Score=31.85 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=20.4
Q ss_pred CCcHHHHHHHcCCChhHHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICR 103 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR 103 (160)
.+++.++|+.||||.+||-+.-+
T Consensus 48 ~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 48 KRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Confidence 58999999999999999987654
No 177
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=68.07 E-value=6.6 Score=26.77 Aligned_cols=30 Identities=3% Similarity=0.082 Sum_probs=23.5
Q ss_pred CHHHHHhh----cCCcHHHHHHHcCCChhHHHHH
Q 041600 72 TLRDLMIY----FHLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 72 t~~~L~~y----F~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
++++|..+ =.+...|.|+.||||..|+.|-
T Consensus 3 ~L~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrd 36 (78)
T 1xn7_A 3 SLIQVRDLLALRGRMEAAQISQTLNTPQPMINAM 36 (78)
T ss_dssp CHHHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHH
Confidence 45555443 3589999999999999999876
No 178
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=67.84 E-value=27 Score=25.48 Aligned_cols=14 Identities=0% Similarity=-0.043 Sum_probs=8.3
Q ss_pred hhHHHHHHHHcCCC
Q 041600 95 PTVVKKICRRDGLH 108 (160)
Q Consensus 95 ~T~LKr~CR~~GI~ 108 (160)
..+|+++|.-+||+
T Consensus 61 ~~~l~~iA~~f~V~ 74 (135)
T 3r1f_A 61 GATMAALANFFRIK 74 (135)
T ss_dssp HHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhCCC
Confidence 44566666666664
No 179
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=67.53 E-value=3.8 Score=28.06 Aligned_cols=25 Identities=20% Similarity=0.126 Sum_probs=21.1
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.++..+.|+.||||.|++.+..+++
T Consensus 33 ~~s~~eLa~~lgvs~~tV~~~L~~L 57 (110)
T 1q1h_A 33 EMTDEEIANQLNIKVNDVRKKLNLL 57 (110)
T ss_dssp CBCHHHHHHTTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3789999999999999988877643
No 180
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=67.35 E-value=3.5 Score=28.90 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=19.9
Q ss_pred cCCcHHHHHHHcCCChhHHHHHHH
Q 041600 80 FHLPIEEAARRMKLCPTVVKKICR 103 (160)
Q Consensus 80 F~lP~~eAA~~Lgv~~T~LKr~CR 103 (160)
..++..|.|++||||.+++.++-.
T Consensus 29 ~g~sa~eLAk~LgiSk~aVr~~L~ 52 (82)
T 1oyi_A 29 EGATAAQLTRQLNMEKREVNKALY 52 (82)
T ss_dssp STEEHHHHHHHSSSCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 458999999999999998877643
No 181
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=66.90 E-value=4.6 Score=31.65 Aligned_cols=40 Identities=18% Similarity=0.039 Sum_probs=28.4
Q ss_pred cCCCCHHHHH----hhcCCcHHHHHHHcCCChhHHHHH----HHHcCC
Q 041600 68 TGKLTLRDLM----IYFHLPIEEAARRMKLCPTVVKKI----CRRDGL 107 (160)
Q Consensus 68 ~~~lt~~~L~----~yF~lP~~eAA~~Lgv~~T~LKr~----CR~~GI 107 (160)
...||-.+.. -.-+++.+|+|+.||||..|+|.. .+++|+
T Consensus 173 ~~~Lt~re~~vl~~~~~G~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (237)
T 3szt_A 173 NVRLTARETEMLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNS 220 (237)
T ss_dssp GCCCCHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 4567777654 223799999999999998776654 445555
No 182
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=66.70 E-value=6.4 Score=29.87 Aligned_cols=31 Identities=16% Similarity=0.352 Sum_probs=22.9
Q ss_pred CCHHHHHhhc----CCcHHHHHHHcCCChhHHHHH
Q 041600 71 LTLRDLMIYF----HLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 71 lt~~~L~~yF----~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
++++.|+-+. +-.+..||++||||.++|-+.
T Consensus 3 ~~l~~l~~f~~v~~~gs~t~AA~~L~isq~avS~~ 37 (306)
T 3hhg_A 3 TNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRI 37 (306)
T ss_dssp CCHHHHHHHHHHHHSSSHHHHHHHHTCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCHHHHHHHhCCCHHHHHHH
Confidence 4555555322 578999999999999988654
No 183
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=66.66 E-value=17 Score=25.57 Aligned_cols=74 Identities=12% Similarity=0.219 Sum_probs=45.0
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc---C-CCCChh---HHH----------hhHHHHHHHHhh-hccCCcHHHHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD---G-LHRWPH---RKI----------KSIQRRMSVASG-RLRSNDAEERANAQI 142 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~---G-I~RWPy---Rki----------kSl~~~i~~L~~-~~~~~~~eerar~~~ 142 (160)
.+++.+.|+.||++.+++-++..++ | |.|=|. |+. .-+......+.. .+..-++++.+....
T Consensus 55 ~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~~~~~~~l~~~e~~~l~~ 134 (149)
T 4hbl_A 55 PQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEAVFEAISSCLPQEFDTTEYDETKY 134 (149)
T ss_dssp SEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHHHHHHHHHTTSCTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 5789999999999988888777654 4 334332 110 111222222222 234458888888888
Q ss_pred HHHHHHHHHHHH
Q 041600 143 EIQRLQEEMAAA 154 (160)
Q Consensus 143 eIerL~~Em~~~ 154 (160)
-++++.+-+..+
T Consensus 135 ~l~~l~~~l~~~ 146 (149)
T 4hbl_A 135 VFEELEQTLKHL 146 (149)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888777654
No 184
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=66.47 E-value=3.6 Score=28.77 Aligned_cols=34 Identities=9% Similarity=-0.028 Sum_probs=18.2
Q ss_pred CCChhHHHHHHHHcCCCC-ChhHHHhhHHHHHHHH
Q 041600 92 KLCPTVVKKICRRDGLHR-WPHRKIKSIQRRMSVA 125 (160)
Q Consensus 92 gv~~T~LKr~CR~~GI~R-WPyRkikSl~~~i~~L 125 (160)
|+..++++.||++.||++ =-|+...|.+..+..+
T Consensus 25 G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 59 (188)
T 3qkx_A 25 GLNQLSMLKLAKEANVAAGTIYLYFKNKDELLEQF 59 (188)
T ss_dssp CSTTCCHHHHHHHHTCCHHHHHHHSSSHHHHHHHH
T ss_pred CcccCCHHHHHHHhCCCcchHHHHcCCHHHHHHHH
Confidence 555555555555555544 2366666665554443
No 185
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=66.33 E-value=5.7 Score=25.97 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=21.3
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.++..++|+.||++.+++-+..+++
T Consensus 30 ~~~~~ela~~l~is~~tvs~~l~~L 54 (100)
T 1ub9_A 30 KAPFSQIQKVLDLTPGNLDSHIRVL 54 (100)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5889999999999999988776654
No 186
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=66.28 E-value=3.9 Score=28.79 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=19.5
Q ss_pred cHHHHHHHcCCChhHHHHHHHHc
Q 041600 83 PIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 83 P~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
+..+.|+.||||.+++.+..++|
T Consensus 45 s~~eLa~~lgVSr~tVr~al~~L 67 (102)
T 2b0l_A 45 VASKIADRVGITRSVIVNALRKL 67 (102)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 78899999999999998876543
No 187
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=66.27 E-value=3.3 Score=31.76 Aligned_cols=30 Identities=17% Similarity=0.109 Sum_probs=24.4
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHH
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKIC 102 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~C 102 (160)
+..++...++++.+.|+.+|||.+++.++-
T Consensus 22 l~~~r~~~g~t~~~lA~~~gis~~~i~~~~ 51 (236)
T 3bdn_A 22 YEKKKNELGLSQESVADKMGMGQSGVGALF 51 (236)
T ss_dssp HHHHTTTTTCCSHHHHHHHTSCHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 445556668899999999999999998874
No 188
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=66.26 E-value=7 Score=29.44 Aligned_cols=60 Identities=15% Similarity=0.248 Sum_probs=40.2
Q ss_pred HHHcCCChhHHHHHHHHcCCCCChhHHHhhH-HHHHHHHhhhccC---CcHHHHHHHHHHHHHHHH
Q 041600 88 ARRMKLCPTVVKKICRRDGLHRWPHRKIKSI-QRRMSVASGRLRS---NDAEERANAQIEIQRLQE 149 (160)
Q Consensus 88 A~~Lgv~~T~LKr~CR~~GI~RWPyRkikSl-~~~i~~L~~~~~~---~~~eerar~~~eIerL~~ 149 (160)
..-.||+.++=+.+|.++||.. ..++..| +.+++.|...+.. -..+=+....+.|++|.+
T Consensus 20 t~I~GIG~~~A~~I~~~~gi~~--~~r~~~Lt~~ei~~l~~~i~~~~~ve~dLrr~~~~nIkRL~~ 83 (126)
T 2vqe_M 20 TYIYGIGKARAKEALEKTGINP--ATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAANIKRLMD 83 (126)
T ss_dssp TTSSSCCSHHHHHHTTTTTCCT--TSBGGGCCHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHcCCCc--ccccCcCCHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHH
Confidence 3457999999999999999964 3444444 3445555555542 244556677888888764
No 189
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=66.14 E-value=5.4 Score=28.92 Aligned_cols=33 Identities=12% Similarity=0.005 Sum_probs=26.7
Q ss_pred HHHHHhhcCCcHHHHHHHc--CCChhHHHHHHHHc
Q 041600 73 LRDLMIYFHLPIEEAARRM--KLCPTVVKKICRRD 105 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~L--gv~~T~LKr~CR~~ 105 (160)
++.|...=.++..+.|+.+ |+|.+++.++|++|
T Consensus 19 L~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~L 53 (111)
T 3b73_A 19 LEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKL 53 (111)
T ss_dssp HHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 4455554478999999999 99999999999864
No 190
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=66.12 E-value=4.7 Score=26.46 Aligned_cols=25 Identities=16% Similarity=0.065 Sum_probs=20.7
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.++..|+|+.||++.+++.+..+++
T Consensus 38 ~~s~~ela~~l~is~~tvs~~l~~L 62 (99)
T 3cuo_A 38 GTSAGELTRITGLSASATSQHLARM 62 (99)
T ss_dssp SEEHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4788999999999999888776554
No 191
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=65.91 E-value=4 Score=28.75 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=19.5
Q ss_pred cHHHHHHHcCCChhHHHHHHHHc
Q 041600 83 PIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 83 P~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
+..+.|+.||||.+++.+.-++|
T Consensus 35 s~~~La~~~~vSr~tvr~al~~L 57 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQSL 57 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 58899999999999999885544
No 192
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=65.60 E-value=4 Score=29.48 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.4
Q ss_pred CCc-HHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLP-IEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP-~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.|| ..+.|+.||||.|++++.-++|
T Consensus 37 ~LPser~La~~~gVSr~tVReAl~~L 62 (134)
T 4ham_A 37 KILSIREFASRIGVNPNTVSKAYQEL 62 (134)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHCCCHHHHHHHHHHH
Confidence 475 7899999999999999988755
No 193
>2ev1_A Hypothetical protein RV1264/MT1302; alpha-helical, regulatory domain of adenylyl cyclase, oleic lyase; HET: OLA 1PE; 1.60A {Mycobacterium tuberculosis} PDB: 2ev2_A* 2ev3_A* 2ev4_A*
Probab=65.59 E-value=4.1 Score=33.43 Aligned_cols=44 Identities=14% Similarity=0.143 Sum_probs=35.9
Q ss_pred cCCCCHHHHHhhc---------------CC-cHHHHHHHcCCChhHHHHHHHHcCCCCCh
Q 041600 68 TGKLTLRDLMIYF---------------HL-PIEEAARRMKLCPTVVKKICRRDGLHRWP 111 (160)
Q Consensus 68 ~~~lt~~~L~~yF---------------~l-P~~eAA~~Lgv~~T~LKr~CR~~GI~RWP 111 (160)
...+|+++|+.-- .+ ++.++|+..||++.++.++.|.+|+++-+
T Consensus 49 ~~G~t~~~i~~a~~~l~l~~~~LLGg~~~yvT~~eVAe~aGv~~e~~rr~wRalGfp~~~ 108 (222)
T 2ev1_A 49 EQGITPDEIRATNPPLLLATRHLVGDDGTYVSAREISENYGVDLELLQRVQRAVGLARVD 108 (222)
T ss_dssp HTTCCHHHHHHSSSCTTHHHHHHTTCCSCEECHHHHHHHHTCCHHHHHHHHHHHCCCCCC
T ss_pred HcCCCHHHHHHHhhhhhhHHHHHhCCCcCcCCHHHHHHHHCcCHHHHHHHHHHhCCCCCC
Confidence 3567788877522 24 99999999999999999999999987753
No 194
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=65.41 E-value=1.3 Score=33.14 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=0.0
Q ss_pred cCCcHHHHHHHcCCChhHHHHHH
Q 041600 80 FHLPIEEAARRMKLCPTVVKKIC 102 (160)
Q Consensus 80 F~lP~~eAA~~Lgv~~T~LKr~C 102 (160)
-+++.+|+|+.||||..+++++-
T Consensus 213 ~g~s~~EIA~~lgis~~tV~~~~ 235 (243)
T 1l0o_C 213 KDQTQSEVASRLGISQVQMSRLE 235 (243)
T ss_dssp -----------------------
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 47999999999999999998874
No 195
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=65.39 E-value=5.4 Score=31.54 Aligned_cols=24 Identities=17% Similarity=0.092 Sum_probs=21.5
Q ss_pred hcCCcHHHHHHHcCCChhHHHHHH
Q 041600 79 YFHLPIEEAARRMKLCPTVVKKIC 102 (160)
Q Consensus 79 yF~lP~~eAA~~Lgv~~T~LKr~C 102 (160)
+-+++.+|+|+.||+|+.|+|..-
T Consensus 210 ~~G~s~~EIA~~L~iS~~TVk~~l 233 (258)
T 3clo_A 210 RKGLSSKEIAATLYISVNTVNRHR 233 (258)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 558999999999999999999774
No 196
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=65.33 E-value=4 Score=31.44 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=21.6
Q ss_pred CCc-HHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLP-IEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP-~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
-|| ..+.|+.||||.|+++..-++|
T Consensus 30 ~LPsE~eLa~~~gVSR~tVReAL~~L 55 (239)
T 1hw1_A 30 ILPAERELSELIGVTRTTLREVLQRL 55 (239)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 586 8999999999999999887754
No 197
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=65.13 E-value=4.9 Score=26.99 Aligned_cols=25 Identities=12% Similarity=-0.007 Sum_probs=20.6
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.++..|.|+.||||.+++.+..+.|
T Consensus 43 ~~~~~eLa~~l~is~~tv~~~L~~L 67 (96)
T 1y0u_A 43 GRSEEEIMQTLSLSKKQLDYHLKVL 67 (96)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4788999999999999998876543
No 198
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=65.11 E-value=7.4 Score=29.40 Aligned_cols=32 Identities=6% Similarity=0.114 Sum_probs=18.9
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHcCCCCChhHHHhhHHHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKIKSIQRRMSVA 125 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWPyRkikSl~~~i~~L 125 (160)
.+++.++|+++|||..+| |+.+.+.+.++..+
T Consensus 45 ~~s~~~IA~~aGvs~~tl-------------Y~~F~~K~~L~~a~ 76 (211)
T 3fiw_A 45 GVSTRRLAKRLGVEQPSL-------------YWYFRTKRDLLTAM 76 (211)
T ss_dssp GCCHHHHHHHHTSCTHHH-------------HTTCSSHHHHHHHH
T ss_pred cCCHHHHHHHhCCChhHH-------------HHHcCCHHHHHHHH
Confidence 455555555555555554 66666766666555
No 199
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=65.00 E-value=2.9 Score=24.90 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=22.0
Q ss_pred cHHHHHHHcCCChhHHHHHHHHcCC
Q 041600 83 PIEEAARRMKLCPTVVKKICRRDGL 107 (160)
Q Consensus 83 P~~eAA~~Lgv~~T~LKr~CR~~GI 107 (160)
.+.+.|++||+++-.|-....+.||
T Consensus 4 rv~~lAkel~~~~k~l~~~l~~~g~ 28 (49)
T 1nd9_A 4 TIKTLAAERQTSVERLVQQFADAGI 28 (49)
T ss_dssp CTTHHHHHHSSSHHHHHHHHHHHTS
T ss_pred cHHHHHHHHCcCHHHHHHHHHHcCC
Confidence 4578999999999999988899998
No 200
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=64.81 E-value=4 Score=33.23 Aligned_cols=24 Identities=17% Similarity=0.007 Sum_probs=20.1
Q ss_pred hcCCcHHHHHHHcCCChhHHHHHH
Q 041600 79 YFHLPIEEAARRMKLCPTVVKKIC 102 (160)
Q Consensus 79 yF~lP~~eAA~~Lgv~~T~LKr~C 102 (160)
.++-.+.+||+.||||.+||.+..
T Consensus 279 ~~~gn~~~aA~~Lgi~r~tl~~kl 302 (304)
T 1ojl_A 279 KTGGNKTEAARQLGITRKTLLAKL 302 (304)
T ss_dssp TTTTCHHHHHHHHTSCHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 346689999999999999997764
No 201
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=64.79 E-value=3.2 Score=30.36 Aligned_cols=34 Identities=6% Similarity=0.009 Sum_probs=20.0
Q ss_pred CCChhHHHHHHHHcCCCC-ChhHHHhhHHHHHHHH
Q 041600 92 KLCPTVVKKICRRDGLHR-WPHRKIKSIQRRMSVA 125 (160)
Q Consensus 92 gv~~T~LKr~CR~~GI~R-WPyRkikSl~~~i~~L 125 (160)
|+..++++.|+++.||++ =+|+-.++.+-++..+
T Consensus 29 G~~~~s~~~IA~~agvs~~t~Y~hF~~Ke~Ll~al 63 (198)
T 3cjd_A 29 GLASLRARELARQADCAVGAIYTHFQDLNALTLEV 63 (198)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHH
T ss_pred ChhhcCHHHHHHHhCCCccHHHHHhCCHHHHHHHH
Confidence 555555666666666554 3477777666655444
No 202
>1s4k_A Putative cytoplasmic protein YDIL; structural genomics, MCSG, PSI, PROT structure initiative; 1.90A {Salmonella typhimurium} SCOP: a.35.1.6
Probab=64.77 E-value=19 Score=27.20 Aligned_cols=46 Identities=20% Similarity=0.197 Sum_probs=37.2
Q ss_pred CCHHHHHhhcCCcHHHHHHHcC--CChhHHHHHHHHcCCCCChhHHHhhH
Q 041600 71 LTLRDLMIYFHLPIEEAARRMK--LCPTVVKKICRRDGLHRWPHRKIKSI 118 (160)
Q Consensus 71 lt~~~L~~yF~lP~~eAA~~Lg--v~~T~LKr~CR~~GI~RWPyRkikSl 118 (160)
+.|..|+..|+|.+.|||..+| |+..+=.+- +.|=.+=|+--+..+
T Consensus 6 ~ELkalR~ilgLt~~EaA~~i~~~vs~rtWQqW--E~G~~~IP~~i~e~~ 53 (120)
T 1s4k_A 6 LELQALRRIFDMTIEECTIYITQDNNSATWQRW--EAGDIPISPEIIARL 53 (120)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTSSSCCHHHHHHH--HHTSSCCCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHhccCCHHHHHHH--HCCCCCCCHHHHHHH
Confidence 4578889999999999999998 898888877 888777786544333
No 203
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=64.49 E-value=9.6 Score=29.52 Aligned_cols=34 Identities=3% Similarity=0.022 Sum_probs=17.8
Q ss_pred hccCCCCHHHHH----------hhcCCcHHHHHHHcCCChhHHH
Q 041600 66 ERTGKLTLRDLM----------IYFHLPIEEAARRMKLCPTVVK 99 (160)
Q Consensus 66 ~r~~~lt~~~L~----------~yF~lP~~eAA~~Lgv~~T~LK 99 (160)
.+....|.+.|- .|-.+.+.++|+++||+..+|-
T Consensus 24 ~~~~~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY 67 (241)
T 2hxi_A 24 AGRRRWSTEQILDAAAELLLAGDAETFSVRKLAASLGTDSSSLY 67 (241)
T ss_dssp ----CCCHHHHHHHHHHHHSSSSCCCCCHHHHHHHTTSCHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCcCHHHHH
Confidence 344556776653 2334666666666666666553
No 204
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=64.42 E-value=3.9 Score=29.15 Aligned_cols=23 Identities=13% Similarity=0.353 Sum_probs=19.8
Q ss_pred CcHHHHHHHcCCChhHHHHHHHH
Q 041600 82 LPIEEAARRMKLCPTVVKKICRR 104 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~CR~ 104 (160)
+++.|.|+.||++.+++-|...+
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~ 65 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKK 65 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHH
Confidence 78999999999999998877654
No 205
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=64.35 E-value=34 Score=23.98 Aligned_cols=89 Identities=17% Similarity=0.192 Sum_probs=52.0
Q ss_pred cCCCCHHHHH------hhcCCcHHHHHHHcCCChhHHHHHHHHc---C-CCCChh----------------HHHhhHHHH
Q 041600 68 TGKLTLRDLM------IYFHLPIEEAARRMKLCPTVVKKICRRD---G-LHRWPH----------------RKIKSIQRR 121 (160)
Q Consensus 68 ~~~lt~~~L~------~yF~lP~~eAA~~Lgv~~T~LKr~CR~~---G-I~RWPy----------------RkikSl~~~ 121 (160)
...||..++. ..=.+++.++|+.|||+.+++-++.+++ | |.|-|. .-+..+...
T Consensus 44 ~~~lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~ 123 (162)
T 2fa5_A 44 RYGMAIPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYETVAPL 123 (162)
T ss_dssp HHCCCHHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHHHHHHH
Confidence 3567766654 2235899999999999988887776644 4 344331 111122222
Q ss_pred HHHHhh-hccCCcHHHHHHHHHHHHHHHHHHHHHhc
Q 041600 122 MSVASG-RLRSNDAEERANAQIEIQRLQEEMAAACA 156 (160)
Q Consensus 122 i~~L~~-~~~~~~~eerar~~~eIerL~~Em~~~c~ 156 (160)
+..+.. .+..-++++.+....-++++.+-+..--|
T Consensus 124 ~~~~~~~~~~~l~~~e~~~l~~~l~~l~~~~~~~~~ 159 (162)
T 2fa5_A 124 VNEMEQRLMSVFSAEEQQTLERLIDRLAKDGLPRMA 159 (162)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHTHHHHHC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhhhcc
Confidence 222222 33445778887777777777776655443
No 206
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=63.71 E-value=21 Score=24.60 Aligned_cols=71 Identities=8% Similarity=0.036 Sum_probs=42.9
Q ss_pred cCCcHHHHHHHcCCChhHHHHHHHHc---C-CCCChh----------------HHHhhHHHHHHHHhh-hccCCcHHHHH
Q 041600 80 FHLPIEEAARRMKLCPTVVKKICRRD---G-LHRWPH----------------RKIKSIQRRMSVASG-RLRSNDAEERA 138 (160)
Q Consensus 80 F~lP~~eAA~~Lgv~~T~LKr~CR~~---G-I~RWPy----------------RkikSl~~~i~~L~~-~~~~~~~eera 138 (160)
=.+++.+.|+.||++.+++-++..++ | |.|=|. .-+..+......+.. .+..-+++|.+
T Consensus 50 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~ 129 (143)
T 3oop_A 50 EPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTELRDIVEASCEKMFAGVTRTDLE 129 (143)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 35789999999999998888877654 4 333221 112223333333332 23445778777
Q ss_pred HHHHHHHHHHHH
Q 041600 139 NAQIEIQRLQEE 150 (160)
Q Consensus 139 r~~~eIerL~~E 150 (160)
....-++++.+.
T Consensus 130 ~l~~~L~~l~~~ 141 (143)
T 3oop_A 130 QFTAILKNISTN 141 (143)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 777777776553
No 207
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=63.51 E-value=5.5 Score=32.69 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=27.7
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHH
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICR 103 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR 103 (160)
+.++..+.++++.++|+.+|||.++|-++-+
T Consensus 36 Ik~~r~~~gltQ~evA~~tGISqS~ISq~e~ 66 (221)
T 2h8r_A 36 IKGYMQQHNIPQREVVDVTGLNQSHLSQHLN 66 (221)
T ss_dssp HHHHHHHHTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHHh
Confidence 5667788899999999999999999999975
No 208
>2og0_A Excisionase; protein-DNA complex, DNA architectural protein, 'winged'HELI protein, phage excision; 1.90A {Enterobacteria phage lambda} SCOP: a.6.1.7 PDB: 1lx8_A 1rh6_A 2ief_A
Probab=63.51 E-value=4.1 Score=26.18 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=23.5
Q ss_pred CcHHHHHHHc--CCChhHHHHHHHHcCC
Q 041600 82 LPIEEAARRM--KLCPTVVKKICRRDGL 107 (160)
Q Consensus 82 lP~~eAA~~L--gv~~T~LKr~CR~~GI 107 (160)
+++.|.|+.+ .+|.+||.|.+|+-.|
T Consensus 3 ltl~EwA~~~~~~~s~~Tl~r~ar~G~I 30 (52)
T 2og0_A 3 LTLQEWNARQRRPRSLETVRRWVRESRI 30 (52)
T ss_dssp EEHHHHHHTSSSCCCHHHHHHHHHTTCE
T ss_pred eeHHHHHHHhcCCCCHHHHHHHHHCCCC
Confidence 6899999999 7899999999998777
No 209
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=63.46 E-value=8.1 Score=27.20 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=21.0
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.+++.++|+.|||+.+++.+..+++
T Consensus 22 ~~~~~ela~~l~vs~~tvs~~l~~L 46 (142)
T 1on2_A 22 YARVSDIAEALAVHPSSVTKMVQKL 46 (142)
T ss_dssp SCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 5899999999999999887776644
No 210
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=63.18 E-value=4 Score=27.89 Aligned_cols=24 Identities=8% Similarity=0.144 Sum_probs=20.6
Q ss_pred C-cHHHHHHHcCCChhHHHHHHHHc
Q 041600 82 L-PIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 82 l-P~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
+ +..+.|+.||||.+++.+.-+.|
T Consensus 35 lps~~eLa~~~~vSr~tvr~al~~L 59 (102)
T 1v4r_A 35 LPSVADIRAQFGVAAKTVSRALAVL 59 (102)
T ss_dssp CCCHHHHHHHSSSCTTHHHHHTTTT
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5 68999999999999999886654
No 211
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=63.12 E-value=4.3 Score=29.35 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=20.5
Q ss_pred C-cHHHHHHHcCCChhHHHHHHHHc
Q 041600 82 L-PIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 82 l-P~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
+ +..+.|+.||||.|++.+.-++|
T Consensus 35 lPse~~La~~~~vSr~tvr~Al~~L 59 (126)
T 3by6_A 35 LPSVRETALQEKINPNTVAKAYKEL 59 (126)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5 68899999999999999876654
No 212
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=63.09 E-value=5.4 Score=29.04 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=21.1
Q ss_pred CC-cHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HL-PIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~l-P~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
-+ +..+.|+.||||.|++.+.-++|
T Consensus 27 ~LPse~~La~~~gvSr~tVr~Al~~L 52 (129)
T 2ek5_A 27 RVPSTNELAAFHRINPATARNGLTLL 52 (129)
T ss_dssp CBCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 36 58899999999999999887765
No 213
>1i3j_A I-TEVI, intron-associated endonuclease 1; protein-DNA complex, extended structure, Zn-finger, minor groove helix, helix-turn-helix; 2.20A {Enterobacteria phage T4} SCOP: d.285.1.1 PDB: 1t2t_A
Probab=63.00 E-value=4.3 Score=30.13 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=26.8
Q ss_pred CCHHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCCCCCh
Q 041600 71 LTLRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWP 111 (160)
Q Consensus 71 lt~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWP 111 (160)
++++. .+--...|||+.||++.+++.+.|.. + .||
T Consensus 76 v~idG---~~f~S~~eAar~lg~s~~ti~~~~~~-~--k~~ 110 (116)
T 1i3j_A 76 ISCDG---VIFDCAADAARHFKISSGLVTYRVKS-D--KWN 110 (116)
T ss_dssp EEETT---EEESSHHHHHHHHTCCHHHHHHHHHC-T--TCC
T ss_pred EEECC---EEEcCHHHHHHHHCCCchhHHHHHhc-C--CCC
Confidence 44444 33489999999999999999999954 3 455
No 214
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=62.72 E-value=6.2 Score=30.61 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=24.8
Q ss_pred CCCCHHHHH----hhcCCcHHHHHHHcCCChhHHHHH
Q 041600 69 GKLTLRDLM----IYFHLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 69 ~~lt~~~L~----~yF~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
..||-.+.. -.-+++.+|+|+.||||..|+|..
T Consensus 174 ~~Lt~~e~~vl~~~~~g~s~~eIa~~l~is~~tV~~~ 210 (236)
T 2q0o_A 174 QMLSPREMLCLVWASKGKTASVTANLTGINARTVQHY 210 (236)
T ss_dssp GSCCHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHH
Confidence 346665544 234899999999999999888755
No 215
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=62.25 E-value=5.5 Score=27.94 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=20.6
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.+++.++|+.|||+.+++.+..+++
T Consensus 31 ~~s~~ela~~l~is~~tv~~~l~~L 55 (139)
T 2x4h_A 31 GAKINRIAKDLKIAPSSVFEEVSHL 55 (139)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHhCCChHHHHHHHHHH
Confidence 4689999999999998887776644
No 216
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=62.18 E-value=8.7 Score=26.26 Aligned_cols=76 Identities=20% Similarity=0.122 Sum_probs=46.9
Q ss_pred hhcCCcHHHHHHHcCCChhHHHHHHHHc---C-CCCChh----------------HHHhhHHHHHHHHhh-hccCCcHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKKICRRD---G-LHRWPH----------------RKIKSIQRRMSVASG-RLRSNDAEE 136 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr~CR~~---G-I~RWPy----------------RkikSl~~~i~~L~~-~~~~~~~ee 136 (160)
..=.+++.+.|+.||++.+++-+..+++ | |.|-|. .-+..+...+..+.. .+..-++++
T Consensus 40 ~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e 119 (138)
T 3bpv_A 40 REPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPLILKVEERWEDLLFRDFTEDE 119 (138)
T ss_dssp HSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHHHHHHHHHHHHHHTTTSCHHH
T ss_pred HcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 3335889999999999988877766543 3 333221 112223333333333 344567888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041600 137 RANAQIEIQRLQEEMAA 153 (160)
Q Consensus 137 rar~~~eIerL~~Em~~ 153 (160)
......-++++.+.+.+
T Consensus 120 ~~~l~~~l~~~~~~l~~ 136 (138)
T 3bpv_A 120 RKLFRKMCRRLAEEAVR 136 (138)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88888888888776654
No 217
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=62.12 E-value=12 Score=28.88 Aligned_cols=59 Identities=8% Similarity=0.227 Sum_probs=37.6
Q ss_pred HHcCCChhHHHHHHHHcCCCCChhHHHhhH-HHHHHHHhhhccC-------------------------CcHHHHHHHHH
Q 041600 89 RRMKLCPTVVKKICRRDGLHRWPHRKIKSI-QRRMSVASGRLRS-------------------------NDAEERANAQI 142 (160)
Q Consensus 89 ~~Lgv~~T~LKr~CR~~GI~RWPyRkikSl-~~~i~~L~~~~~~-------------------------~~~eerar~~~ 142 (160)
.--||+.++=+.+|+++||.. ..++..| +.+++.|...+.+ -..+=+....+
T Consensus 34 ~I~GIG~~~A~~I~~~~gid~--~~r~g~Lt~~ei~~l~~~i~~~~~~~iP~w~lNR~kD~~~G~~~~lie~dL~~~~~~ 111 (146)
T 3u5c_S 34 TIKGVGRRYSNLVCKKADVDL--HKRAGELTQEELERIVQIMQNPTHYKIPAWFLNRQNDITDGKDYHTLANNVESKLRD 111 (146)
T ss_dssp GSTTCCHHHHHHHHHHHTCCT--TSCSSSCCHHHHHHHHHHHTCTTTTTCCSTTCTBCSCSSSCCCBCCCTHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHcCCCC--CceeccCCHHHHHHHHHHHHhhcccCccHHHhhhhhcccccchheeehHHHHHHHHH
Confidence 345999999999999999953 3444443 2334444444431 03455667888
Q ss_pred HHHHHHH
Q 041600 143 EIQRLQE 149 (160)
Q Consensus 143 eIerL~~ 149 (160)
.|++|++
T Consensus 112 dI~RL~~ 118 (146)
T 3u5c_S 112 DLERLKK 118 (146)
T ss_dssp HHHHHHH
T ss_pred hhHHHHh
Confidence 8888864
No 218
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=61.58 E-value=36 Score=23.29 Aligned_cols=74 Identities=16% Similarity=0.133 Sum_probs=45.9
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc---C-CCCChh----------------HHHhhHHHHHHHHh-hhccCCcHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD---G-LHRWPH----------------RKIKSIQRRMSVAS-GRLRSNDAEERAN 139 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~---G-I~RWPy----------------RkikSl~~~i~~L~-~~~~~~~~eerar 139 (160)
.+++.++|+.||++.+++-+..+++ | |.|-|. .-+..+...+..+. ..+..-++++.+.
T Consensus 43 ~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~ 122 (144)
T 1lj9_A 43 GIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVEISQ 122 (144)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred CcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5789999999999988877766543 3 333320 11233333333333 2344568888888
Q ss_pred HHHHHHHHHHHHHHH
Q 041600 140 AQIEIQRLQEEMAAA 154 (160)
Q Consensus 140 ~~~eIerL~~Em~~~ 154 (160)
...-++++.+-+...
T Consensus 123 l~~~l~~l~~~l~~~ 137 (144)
T 1lj9_A 123 LADYLVRMRKNVSED 137 (144)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHH
Confidence 888888777666543
No 219
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=61.58 E-value=6.6 Score=30.40 Aligned_cols=33 Identities=18% Similarity=0.047 Sum_probs=24.8
Q ss_pred CCCCHHHHH----hhcCCcHHHHHHHcCCChhHHHHH
Q 041600 69 GKLTLRDLM----IYFHLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 69 ~~lt~~~L~----~yF~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
..||-.+.. -.-+++.+|+|+.||||..|+|..
T Consensus 172 ~~Lt~~e~~vl~~~~~g~s~~eIa~~l~is~~tV~~~ 208 (234)
T 1l3l_A 172 AWLDPKEATYLRWIAVGKTMEEIADVEGVKYNSVRVK 208 (234)
T ss_dssp CCCCHHHHHHHHHHTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHH
Confidence 346666554 233799999999999999888765
No 220
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=60.89 E-value=5.4 Score=31.02 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=20.6
Q ss_pred CCc-HHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLP-IEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP-~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
-|| ..+.|+.||||.|+++..-++|
T Consensus 27 ~LpsE~~La~~lgVSRtpVREAL~~L 52 (239)
T 2di3_A 27 HLPSERALSETLGVSRSSLREALRVL 52 (239)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 486 7799999999999998776644
No 221
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=60.55 E-value=5.8 Score=25.70 Aligned_cols=45 Identities=9% Similarity=-0.003 Sum_probs=37.0
Q ss_pred hhhccCCCCHHHHHhhcCCcHHHHHHH-----cCCChhHHHHHHHHcCCC
Q 041600 64 QRERTGKLTLRDLMIYFHLPIEEAARR-----MKLCPTVVKKICRRDGLH 108 (160)
Q Consensus 64 ~r~r~~~lt~~~L~~yF~lP~~eAA~~-----Lgv~~T~LKr~CR~~GI~ 108 (160)
..++...+|..+|....+++....++- -.++..+|.++|+-+|++
T Consensus 17 ~~R~~~gltq~elA~~~gis~~~is~~E~G~~~~p~~~~l~~ia~~l~v~ 66 (78)
T 3qq6_A 17 QYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVS 66 (78)
T ss_dssp HHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSCCCCBHHHHHHHHHHHTCC
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHCcC
Confidence 345567899999999999999888773 346788999999999984
No 222
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=60.40 E-value=4.8 Score=30.84 Aligned_cols=25 Identities=16% Similarity=0.200 Sum_probs=22.0
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
-++..+.|+.||||.|+++...++|
T Consensus 35 ~L~e~~La~~lgVSRtpVREAL~~L 59 (218)
T 3sxy_A 35 KLNVRELSEKLGISFTPVRDALLQL 59 (218)
T ss_dssp EECHHHHHHHHTCCHHHHHHHHHHH
T ss_pred EeCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4789999999999999999887765
No 223
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=60.10 E-value=10 Score=26.09 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=20.9
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.+.+.++|+.|||+.+++-+..+++
T Consensus 45 ~~s~~ela~~l~is~stvsr~l~~L 69 (119)
T 2lkp_A 45 PLPVTDLAEAIGMEQSAVSHQLRVL 69 (119)
T ss_dssp CCCHHHHHHHHSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5889999999999999987776544
No 224
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=60.08 E-value=20 Score=26.68 Aligned_cols=96 Identities=16% Similarity=0.270 Sum_probs=48.4
Q ss_pred chHHHHHHHHHHHHHHhhCCce---------------eecCchhHHHHHhhccc-----------ccCCCC-CCCCC-CC
Q 041600 5 SIENVKEYLVQYCEERKQAGFM---------------MLPDPLSDFYEAVCVGL-----------VLDDNL-TTDDY-SQ 56 (160)
Q Consensus 5 s~~~vk~~L~~y~~~r~~~g~~---------------~~qd~~s~f~~alc~~~-----------~~~~~~-~~d~~-~~ 56 (160)
+++++.+|-..+=+.|-..||- .-|..++.| |+|.... .|-++. ..+.. ..
T Consensus 1 ~~~~l~~fa~~~k~~ri~lg~tQ~~vg~al~~l~g~~~Sqtti~rf-e~l~ls~knm~kLkPlL~~wl~e~e~~~~~~~~ 79 (146)
T 1au7_A 1 GMRALEQFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRF-ENLQLSFKNACKLKAILSKWLEEAEQVGALYNE 79 (146)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTSSCCCHHHHHHH-HTTCSBHHHHHHHHHHHHHHHHHCCC-------
T ss_pred CccHHHHHHHHHHHHHHhccCcHHhhhhhcchhccCCCCcchHHHH-hccCCChHHHHhcchHHHHHHHHhhcccCccCc
Confidence 3678889999998888888773 234444443 4433322 121111 11111 11
Q ss_pred CCCCchhhhhccCCCCHH---HHHhhcC---Cc----HHHHHHHcCCChhHHHHH
Q 041600 57 PPMTNSVQRERTGKLTLR---DLMIYFH---LP----IEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 57 ps~s~s~~r~r~~~lt~~---~L~~yF~---lP----~~eAA~~Lgv~~T~LKr~ 101 (160)
+......+|++-..+|-+ .|..+|. .| ..+.|+.||++.+.++--
T Consensus 80 ~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vW 134 (146)
T 1au7_A 80 KVGANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVW 134 (146)
T ss_dssp ---------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHH
T ss_pred ccCCCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhh
Confidence 111122333333445554 4556663 33 567799999999988854
No 225
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=60.00 E-value=5.7 Score=31.34 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=21.9
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.++..+.|+.||||.|++.+--++|
T Consensus 49 ~L~e~~La~~lgVSr~~VReAL~~L 73 (237)
T 3c7j_A 49 ALRQQELATLFGVSRMPVREALRQL 73 (237)
T ss_dssp BCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred eeCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5799999999999999999877754
No 226
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=59.61 E-value=6.9 Score=29.70 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=22.6
Q ss_pred CCCHHHHHhhc----CCcHHHHHHHcCCChhHHHHH
Q 041600 70 KLTLRDLMIYF----HLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 70 ~lt~~~L~~yF----~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
.+++..|+-+. +-.+..||++||||.++|-+.
T Consensus 3 ~~~l~~l~~f~~v~~~~s~s~AA~~L~isq~avS~~ 38 (306)
T 3fzv_A 3 SYTLRQLKYFVTTVECGSVAEASRKLYIAQPSISTA 38 (306)
T ss_dssp -CCHHHHHHHHHHHHSSSHHHHHHHHTCCC-CHHHH
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHhCCCchHHHHH
Confidence 35666665333 678999999999998887654
No 227
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=59.47 E-value=24 Score=25.62 Aligned_cols=88 Identities=15% Similarity=0.112 Sum_probs=55.4
Q ss_pred ccCCCCHHHHH------h-hcCCcHHHHHHHcCCChhHHHHHHHHc---C-CCCChh---H-------------HHhhHH
Q 041600 67 RTGKLTLRDLM------I-YFHLPIEEAARRMKLCPTVVKKICRRD---G-LHRWPH---R-------------KIKSIQ 119 (160)
Q Consensus 67 r~~~lt~~~L~------~-yF~lP~~eAA~~Lgv~~T~LKr~CR~~---G-I~RWPy---R-------------kikSl~ 119 (160)
+...||..++. . .=.+++.+.|+.|||+.+++-++..++ | |.|-|. | -+..+.
T Consensus 47 ~~~glt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 126 (166)
T 3deu_A 47 KPLELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEME 126 (166)
T ss_dssp TTTTCCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHHHHH
Confidence 34567776654 2 113789999999999988888776654 4 344331 1 122233
Q ss_pred HHHHHHhh-hccCCcHHHHHHHHHHHHHHHHHHHHH
Q 041600 120 RRMSVASG-RLRSNDAEERANAQIEIQRLQEEMAAA 154 (160)
Q Consensus 120 ~~i~~L~~-~~~~~~~eerar~~~eIerL~~Em~~~ 154 (160)
..+..+.. .+..-+++|.+....-++++.+-+.++
T Consensus 127 ~~~~~~~~~~~~~l~~~e~~~l~~~L~~l~~~l~~~ 162 (166)
T 3deu_A 127 EVIHKTRGEILAGISSEEIELLIKLIAKLEHNIMEL 162 (166)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33333332 334568888888888888888877764
No 228
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=59.42 E-value=9.5 Score=26.74 Aligned_cols=31 Identities=6% Similarity=0.133 Sum_probs=23.7
Q ss_pred CHHHHHhh----cCCcHHHHHHHcCCChhHHHHHH
Q 041600 72 TLRDLMIY----FHLPIEEAARRMKLCPTVVKKIC 102 (160)
Q Consensus 72 t~~~L~~y----F~lP~~eAA~~Lgv~~T~LKr~C 102 (160)
+|++|..+ =.+...|.|+.||||..|+.|--
T Consensus 3 ~L~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL 37 (87)
T 2k02_A 3 SLMEVRDMLALQGRMEAKQLSARLQTPQPLIDAML 37 (87)
T ss_dssp CTHHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHH
Confidence 44444443 35899999999999999998774
No 229
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=59.31 E-value=27 Score=24.25 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=23.6
Q ss_pred HhhcCCcHHHHHHHc-CCChhHHHHHHHH
Q 041600 77 MIYFHLPIEEAARRM-KLCPTVVKKICRR 104 (160)
Q Consensus 77 ~~yF~lP~~eAA~~L-gv~~T~LKr~CR~ 104 (160)
+.+.++++.++++.| |...||+-..|++
T Consensus 42 r~~t~~Sl~~IG~~fggrdHsTV~ha~~k 70 (94)
T 1j1v_A 42 KELTNHSLPEIGDAFGGRDHTTVLHACRK 70 (94)
T ss_dssp HHHSCCCHHHHHHHTTSCCHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHhCCCCHHHHHHHHHH
Confidence 477899999999999 7999998888754
No 230
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=59.01 E-value=21 Score=25.47 Aligned_cols=82 Identities=22% Similarity=0.277 Sum_probs=52.3
Q ss_pred cCCCCHHHHHh---h-----cCCcHHHHHHHcCCChhHHHHHHHHc---C-CCCChh----------------HHHhhHH
Q 041600 68 TGKLTLRDLMI---Y-----FHLPIEEAARRMKLCPTVVKKICRRD---G-LHRWPH----------------RKIKSIQ 119 (160)
Q Consensus 68 ~~~lt~~~L~~---y-----F~lP~~eAA~~Lgv~~T~LKr~CR~~---G-I~RWPy----------------RkikSl~ 119 (160)
...||..+..- . =.+++.+.|+.|||+.+++-++..++ | |.|=|. .-+..+.
T Consensus 30 ~~gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 109 (147)
T 4b8x_A 30 PYGLTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVEAAT 109 (147)
T ss_dssp GGTCCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHHHHH
Confidence 45677766431 1 12789999999999998888777654 3 333221 1233344
Q ss_pred HHHHHHhhhccCCcHHHHHHHHHHHHHHHH
Q 041600 120 RRMSVASGRLRSNDAEERANAQIEIQRLQE 149 (160)
Q Consensus 120 ~~i~~L~~~~~~~~~eerar~~~eIerL~~ 149 (160)
..+..+...+..-+++|++....-+++|.+
T Consensus 110 ~~~~~~~~~l~~l~~ee~~~l~~~L~~l~~ 139 (147)
T 4b8x_A 110 RDLMAMDFGLGAYDAEECGEIFAMLRPLRV 139 (147)
T ss_dssp HHHHHTGGGTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 455555666655688888777777777754
No 231
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=58.87 E-value=15 Score=24.23 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=37.5
Q ss_pred cCCCCHHHHHhhcCCcHHHHHHHcCC-ChhHHHHHHHHcCCCC---ChhH
Q 041600 68 TGKLTLRDLMIYFHLPIEEAARRMKL-CPTVVKKICRRDGLHR---WPHR 113 (160)
Q Consensus 68 ~~~lt~~~L~~yF~lP~~eAA~~Lgv-~~T~LKr~CR~~GI~R---WPyR 113 (160)
...+|+.+|..-.+++...+.+.+.- .++..+.||.-+|++- ||-|
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~~~~~~p~~~~~IA~aLgv~~~~L~~~r 69 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANALERHWPKGEQIIANALETKPEVIWPSR 69 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHTTTSSCHHHHHHHHHHTTSCHHHHCTTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcCCCccHHHHHHHHHCcCHHHHhHHh
Confidence 56799999999999999988886653 5777788999999865 6755
No 232
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=58.56 E-value=13 Score=25.40 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=26.1
Q ss_pred CCCHHHHH------hhcCCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 70 KLTLRDLM------IYFHLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 70 ~lt~~~L~------~yF~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.+|..++. ..=.+++.++|+.||++.+++-+..+++
T Consensus 35 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L 76 (140)
T 2nnn_A 35 GLTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERL 76 (140)
T ss_dssp CCCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 56655544 2225789999999999988887777654
No 233
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=58.38 E-value=12 Score=25.72 Aligned_cols=25 Identities=4% Similarity=0.092 Sum_probs=19.9
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.+++.++|+.|||+.+++-+..+++
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~L 74 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRM 74 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHH
Confidence 4789999999999988776665543
No 234
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=58.02 E-value=19 Score=22.19 Aligned_cols=43 Identities=12% Similarity=-0.044 Sum_probs=34.7
Q ss_pred hccCCCCHHHHHhhcCCcHHHHHHHc----CCChhHHHHHHHHcCCC
Q 041600 66 ERTGKLTLRDLMIYFHLPIEEAARRM----KLCPTVVKKICRRDGLH 108 (160)
Q Consensus 66 ~r~~~lt~~~L~~yF~lP~~eAA~~L----gv~~T~LKr~CR~~GI~ 108 (160)
.....+|..+|....+++...+.+-. ..+..++.++|..+|++
T Consensus 19 r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~~~ 65 (76)
T 3bs3_A 19 LAEKQRTNRWLAEQMGKSENTISRWCSNKSQPSLDMLVKVAELLNVD 65 (76)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHHHHHTSC
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcC
Confidence 44567999999999999998887743 25678899999999984
No 235
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=57.62 E-value=9.3 Score=28.44 Aligned_cols=21 Identities=0% Similarity=0.061 Sum_probs=17.9
Q ss_pred CCcHHHHHHHcCCChhHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
+-.+..||++||||.++|-+.
T Consensus 15 ~~s~t~AA~~L~isq~avS~~ 35 (291)
T 3szp_A 15 NGSYTSTSKKTMIPVATITRR 35 (291)
T ss_dssp HSSHHHHHHHHTCCHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHH
Confidence 467899999999999998654
No 236
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=57.47 E-value=39 Score=22.37 Aligned_cols=84 Identities=4% Similarity=-0.118 Sum_probs=53.5
Q ss_pred ccCCCCHHHHHhhcCCcHHHHHHH-cC----CChhHHHHHHHHcCCCC-ChhHHH-------hhHHHHHHHHhhhc-cCC
Q 041600 67 RTGKLTLRDLMIYFHLPIEEAARR-MK----LCPTVVKKICRRDGLHR-WPHRKI-------KSIQRRMSVASGRL-RSN 132 (160)
Q Consensus 67 r~~~lt~~~L~~yF~lP~~eAA~~-Lg----v~~T~LKr~CR~~GI~R-WPyRki-------kSl~~~i~~L~~~~-~~~ 132 (160)
....+|..+|....+++.....+- -| .+..+|.++|+.+|++- |=...- .........+...+ ..-
T Consensus 11 ~~~gltq~~lA~~~gis~~~i~~~e~g~~~~p~~~~l~~ia~~l~v~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 90 (111)
T 1b0n_A 11 KEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEKLVRDAMTSGV 90 (111)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHTCCHHHHHCCTTCC-----CCHHHHHHHHHHHHSCC
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHCcCHHHHhcCCCCCCCcccccHHHHHHHHHHHHcCC
Confidence 446789999999999998888763 23 56788999999999853 211110 00012233333444 556
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 041600 133 DAEERANAQIEIQRLQEE 150 (160)
Q Consensus 133 ~~eerar~~~eIerL~~E 150 (160)
+++++..+..-|+.|...
T Consensus 91 ~~e~~~~i~~~i~~l~~~ 108 (111)
T 1b0n_A 91 SKKQFREFLDYQKWRKSQ 108 (111)
T ss_dssp CHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 778777777777766543
No 237
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=57.33 E-value=12 Score=25.57 Aligned_cols=72 Identities=11% Similarity=0.071 Sum_probs=43.3
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc---C-CCCChh---H-------------HH-hhHHHHHHHHhh-hccCCcHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD---G-LHRWPH---R-------------KI-KSIQRRMSVASG-RLRSNDAEERA 138 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~---G-I~RWPy---R-------------ki-kSl~~~i~~L~~-~~~~~~~eera 138 (160)
.+++.++|+.||++.+++-+..+++ | |.|-|. | -+ ..+...+..+.. .+..-++++..
T Consensus 45 ~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~~l~~~e~~ 124 (142)
T 3bdd_A 45 PLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREALITNPSAHHQAIKTSMNQILTVEESE 124 (142)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHTTSCCHHHHHHHHHHHTSSCHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 5789999999999988877666543 3 344332 1 11 112222333333 23445778877
Q ss_pred HHHHHHHHHHHHHH
Q 041600 139 NAQIEIQRLQEEMA 152 (160)
Q Consensus 139 r~~~eIerL~~Em~ 152 (160)
....-++++.+.+.
T Consensus 125 ~l~~~l~~~~~~l~ 138 (142)
T 3bdd_A 125 QFLATLDKLLIGLQ 138 (142)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777776654
No 238
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=57.28 E-value=12 Score=26.83 Aligned_cols=26 Identities=19% Similarity=0.155 Sum_probs=21.5
Q ss_pred cCCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 80 FHLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 80 F~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
=.+.+.++|+.|||+.+++.+..+++
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~L 78 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRL 78 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHH
Confidence 35889999999999998888776643
No 239
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=57.11 E-value=21 Score=24.82 Aligned_cols=81 Identities=6% Similarity=0.003 Sum_probs=39.9
Q ss_pred CCCCHHHHH------hh--cCCcHHHHHHHcCCChhHHHHHHHHc---C-CCCChh---HH-------------HhhHHH
Q 041600 69 GKLTLRDLM------IY--FHLPIEEAARRMKLCPTVVKKICRRD---G-LHRWPH---RK-------------IKSIQR 120 (160)
Q Consensus 69 ~~lt~~~L~------~y--F~lP~~eAA~~Lgv~~T~LKr~CR~~---G-I~RWPy---Rk-------------ikSl~~ 120 (160)
..||..++. .. =.+++.+.|+.||++.+++-++..++ | |.|-|. |+ +..+..
T Consensus 37 ~glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~~ 116 (148)
T 3jw4_A 37 LGLNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFNN 116 (148)
T ss_dssp TTCCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHHHHHH
Confidence 456655543 33 35789999999999977777666544 3 555542 11 222222
Q ss_pred HHHHHhhh-ccCCcHHHHHHHHHHHHHHHH
Q 041600 121 RMSVASGR-LRSNDAEERANAQIEIQRLQE 149 (160)
Q Consensus 121 ~i~~L~~~-~~~~~~eerar~~~eIerL~~ 149 (160)
....+... +..-+++|++....-++++.+
T Consensus 117 ~~~~~~~~~~~~l~~~e~~~l~~~L~~l~~ 146 (148)
T 3jw4_A 117 IFLEVEESITKGLTKDEQKQLMSILIKVNR 146 (148)
T ss_dssp HHHHHHHHTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 33333332 334577777766666666543
No 240
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=56.82 E-value=12 Score=29.15 Aligned_cols=38 Identities=3% Similarity=-0.091 Sum_probs=32.1
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCCCCC
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRW 110 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RW 110 (160)
++.|...=.+...|.|+.||||..|+.|=-.+|+|+-.
T Consensus 18 ~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~~~l 55 (190)
T 4a0z_A 18 RQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPEL 55 (190)
T ss_dssp HHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTCCCH
T ss_pred HHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcCcch
Confidence 44555655689999999999999999999999999654
No 241
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=56.66 E-value=14 Score=25.60 Aligned_cols=25 Identities=12% Similarity=0.108 Sum_probs=20.3
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.+++.++|+.||++.+++-+..+++
T Consensus 50 ~~~~~~la~~l~i~~~~vs~~l~~L 74 (147)
T 2hr3_A 50 DVTPSELAAAERMRSSNLAALLREL 74 (147)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCChhhHHHHHHHH
Confidence 5789999999999988877666544
No 242
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=56.62 E-value=12 Score=25.70 Aligned_cols=73 Identities=16% Similarity=0.131 Sum_probs=41.7
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc---C-CCCChh----------------HHHhhHHHHHHHHh-hhccCCcHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD---G-LHRWPH----------------RKIKSIQRRMSVAS-GRLRSNDAEERAN 139 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~---G-I~RWPy----------------RkikSl~~~i~~L~-~~~~~~~~eerar 139 (160)
.+++.++|+.||++.+++-++.+++ | |.|=|. .-+..+...+..+. ..+..-++++...
T Consensus 47 ~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~ 126 (145)
T 2a61_A 47 PKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVIERRENFIEKITSDLGKEKSSK 126 (145)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 5789999999999988887777654 3 333221 11112222222222 2223346677777
Q ss_pred HHHHHHHHHHHHHH
Q 041600 140 AQIEIQRLQEEMAA 153 (160)
Q Consensus 140 ~~~eIerL~~Em~~ 153 (160)
...-++++.+-+.+
T Consensus 127 l~~~l~~l~~~l~~ 140 (145)
T 2a61_A 127 ILDYLKELKGVMER 140 (145)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777665543
No 243
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=56.54 E-value=10 Score=26.80 Aligned_cols=35 Identities=11% Similarity=-0.073 Sum_probs=27.8
Q ss_pred CCHHHHHhhc--CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 71 LTLRDLMIYF--HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 71 lt~~~L~~yF--~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.-+.-+..++ .+++.|||++.||+.+.+.+-.+.+
T Consensus 37 ~Kl~VV~~~~~g~~s~~e~arry~Is~s~i~~W~r~~ 73 (95)
T 2jrt_A 37 RKAAVVKAVIHGLITEREALDRYSLSEEEFALWRSAV 73 (95)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 3344555555 5899999999999999999988875
No 244
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=56.45 E-value=2.3 Score=32.43 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=0.0
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRR 104 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~ 104 (160)
+++..++|+.||||.+|+.|+.++
T Consensus 158 G~s~~~Ia~~l~vs~~T~yr~l~~ 181 (193)
T 3plo_X 158 GIPRKQVALIYDVALSTLYKKHPA 181 (193)
T ss_dssp ------------------------
T ss_pred CCCHHHHHHHHCcCHHHHHHHHhh
Confidence 578899999999999999887554
No 245
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=56.33 E-value=13 Score=27.37 Aligned_cols=21 Identities=5% Similarity=0.077 Sum_probs=19.5
Q ss_pred cHHHHHHHcCCChhHHHHHHH
Q 041600 83 PIEEAARRMKLCPTVVKKICR 103 (160)
Q Consensus 83 P~~eAA~~Lgv~~T~LKr~CR 103 (160)
.+.+.|+.+|||.+++.+.-+
T Consensus 22 tq~elA~~~Gis~~~i~~~e~ 42 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYT 42 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHH
T ss_pred CHHHHHHHhCcCHHHHHHHHh
Confidence 899999999999999999865
No 246
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=55.95 E-value=33 Score=23.39 Aligned_cols=70 Identities=10% Similarity=0.183 Sum_probs=41.7
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc---C-CCCChh----------------HHHhhHHHHHHHHhh-hccCCcHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD---G-LHRWPH----------------RKIKSIQRRMSVASG-RLRSNDAEERAN 139 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~---G-I~RWPy----------------RkikSl~~~i~~L~~-~~~~~~~eerar 139 (160)
.+++.+.|+.+|++.+++-++.+++ | |.|-|. .-+..+...+..+.. .+..-++++.+.
T Consensus 47 ~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~ 126 (139)
T 3eco_A 47 GLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTSIFDEMEQTLVSQLSEEENEQ 126 (139)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5789999999999988888877655 4 344331 112222223333322 234457777777
Q ss_pred HHHHHHHHHHH
Q 041600 140 AQIEIQRLQEE 150 (160)
Q Consensus 140 ~~~eIerL~~E 150 (160)
...-++++.+.
T Consensus 127 l~~~l~~l~~~ 137 (139)
T 3eco_A 127 MKANLTKMLSS 137 (139)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 76666666543
No 247
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=55.79 E-value=14 Score=24.83 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=21.2
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.++..+.|+.||++.+++.+.-+++
T Consensus 34 ~~~~~ela~~l~is~~tv~~~l~~L 58 (114)
T 2oqg_A 34 DQSASSLATRLPVSRQAIAKHLNAL 58 (114)
T ss_dssp CBCHHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5889999999999999988876654
No 248
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=55.76 E-value=5.5 Score=29.40 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=20.4
Q ss_pred CCChhHHHHHHHHcCCCC-ChhHHHhhHHHHHHHH
Q 041600 92 KLCPTVVKKICRRDGLHR-WPHRKIKSIQRRMSVA 125 (160)
Q Consensus 92 gv~~T~LKr~CR~~GI~R-WPyRkikSl~~~i~~L 125 (160)
|...++++.||++.||+| =-|+-.++.+.++..+
T Consensus 37 g~~~~tv~~Ia~~Agvs~~t~Y~~F~~K~~L~~~~ 71 (185)
T 3o60_A 37 TFESISIKDLCEQARVSRATFYRHHKEIIQVIEVQ 71 (185)
T ss_dssp CTTTCCHHHHHHHHTCCHHHHHHHCSSTHHHHHHH
T ss_pred CcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 556666666666666655 3366666666555543
No 249
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=55.59 E-value=8.5 Score=25.67 Aligned_cols=40 Identities=5% Similarity=0.064 Sum_probs=23.9
Q ss_pred cCCCCHHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHcCC
Q 041600 68 TGKLTLRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGL 107 (160)
Q Consensus 68 ~~~lt~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI 107 (160)
...+|+.+|...++++...+-..+.-+...||+...+.|+
T Consensus 51 ~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~~~ 90 (92)
T 3hug_A 51 YRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGV 90 (92)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3456666666666666666666666655566655555554
No 250
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=54.87 E-value=7.7 Score=29.38 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=21.0
Q ss_pred CcHHHHHHHcCCChhHHHHHHHH
Q 041600 82 LPIEEAARRMKLCPTVVKKICRR 104 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~CR~ 104 (160)
-.+.|||+.+||+.+++-++|+.
T Consensus 136 ~s~~eAa~~~Gvs~~tIs~~~~g 158 (174)
T 1u3e_M 136 PSTKCACEELGLTRGKVTDVLKG 158 (174)
T ss_dssp SCHHHHHHHHTCCHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHhHhHHHHcC
Confidence 47999999999999999999974
No 251
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=54.80 E-value=12 Score=24.88 Aligned_cols=23 Identities=4% Similarity=0.040 Sum_probs=19.1
Q ss_pred CCcHHHHHHHcCCChhH-HHHHHH
Q 041600 81 HLPIEEAARRMKLCPTV-VKKICR 103 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~-LKr~CR 103 (160)
.+++.+.|+.||++.++ +-++.+
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~ 53 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKD 53 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHH
T ss_pred CCCHHHHHHHHCCCchHHHHHHHH
Confidence 58999999999999999 666543
No 252
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=54.70 E-value=24 Score=21.58 Aligned_cols=41 Identities=5% Similarity=-0.117 Sum_probs=33.0
Q ss_pred ccCCCCHHHHHhhcCCcHHHHHHHc----CCChhHHHHHHHHcCC
Q 041600 67 RTGKLTLRDLMIYFHLPIEEAARRM----KLCPTVVKKICRRDGL 107 (160)
Q Consensus 67 r~~~lt~~~L~~yF~lP~~eAA~~L----gv~~T~LKr~CR~~GI 107 (160)
....+|..+|....+++...+.+-. ..+..++.++|..+|+
T Consensus 15 ~~~gls~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~~ 59 (76)
T 1adr_A 15 KKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQC 59 (76)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHTTS
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCc
Confidence 3457899999999999988887733 3567889999999998
No 253
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=54.59 E-value=12 Score=25.63 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=44.1
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc---C-CCCCh----------------hHHHhhHHHHHHHHhh-hccCCcHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD---G-LHRWP----------------HRKIKSIQRRMSVASG-RLRSNDAEERAN 139 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~---G-I~RWP----------------yRkikSl~~~i~~L~~-~~~~~~~eerar 139 (160)
.+++.+.|+.||++.+++-+..+++ | |.|-| ..-+..+...+..+.. .+..-++++...
T Consensus 52 ~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~ 131 (146)
T 2fbh_A 52 SPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADIEAIAASVRNDVLTGIDESEQAL 131 (146)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred CCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 5789999999999988887776643 3 33322 1122233333333332 334457788877
Q ss_pred HHHHHHHHHHHHH
Q 041600 140 AQIEIQRLQEEMA 152 (160)
Q Consensus 140 ~~~eIerL~~Em~ 152 (160)
...-++++.+-+.
T Consensus 132 l~~~l~~l~~~l~ 144 (146)
T 2fbh_A 132 CQQVLLRILANLE 144 (146)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7777777766543
No 254
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=54.09 E-value=14 Score=25.59 Aligned_cols=71 Identities=23% Similarity=0.295 Sum_probs=41.3
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc---C-CCCChh---H-------------HHhhHHHHHHHH-hhhccCCcHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD---G-LHRWPH---R-------------KIKSIQRRMSVA-SGRLRSNDAEERAN 139 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~---G-I~RWPy---R-------------kikSl~~~i~~L-~~~~~~~~~eerar 139 (160)
.+++.++|+.||++.+++-+..+++ | |.|-|. | -+..+...+..+ ...+..-++++.+.
T Consensus 56 ~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~ 135 (150)
T 2rdp_A 56 DLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEEVIEKRQRDLANVLESFSDEEIVV 135 (150)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHH
T ss_pred CCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5789999999999988877777654 3 333221 1 111222222222 22334457777777
Q ss_pred HHHHHHHHHHHH
Q 041600 140 AQIEIQRLQEEM 151 (160)
Q Consensus 140 ~~~eIerL~~Em 151 (160)
...-++++.+-+
T Consensus 136 l~~~l~~l~~~l 147 (150)
T 2rdp_A 136 FERCLRKLHQEM 147 (150)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777766543
No 255
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=53.92 E-value=46 Score=23.57 Aligned_cols=85 Identities=14% Similarity=0.180 Sum_probs=53.2
Q ss_pred cCCCCHHHHH------hhcCCcHHHHHHHcCCChhHHHHHHHHc---C-CCCChh----------------HHHhhHHHH
Q 041600 68 TGKLTLRDLM------IYFHLPIEEAARRMKLCPTVVKKICRRD---G-LHRWPH----------------RKIKSIQRR 121 (160)
Q Consensus 68 ~~~lt~~~L~------~yF~lP~~eAA~~Lgv~~T~LKr~CR~~---G-I~RWPy----------------RkikSl~~~ 121 (160)
...||..++. ..=.+++.+.|+.|||+.+++-++..++ | |.|-|. .-+..+...
T Consensus 41 ~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~ 120 (162)
T 3k0l_A 41 ALEISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQCNQV 120 (162)
T ss_dssp TTTCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHHHHHHH
Confidence 4567766654 2235899999999999998888887765 4 344331 122333333
Q ss_pred HHHHhh-hccCCcHHHHHHHHHHHHHHHHHHH
Q 041600 122 MSVASG-RLRSNDAEERANAQIEIQRLQEEMA 152 (160)
Q Consensus 122 i~~L~~-~~~~~~~eerar~~~eIerL~~Em~ 152 (160)
+..+.. .+..-++++.+....-++++.+.+.
T Consensus 121 ~~~~~~~~~~~l~~~e~~~l~~~L~~l~~~l~ 152 (162)
T 3k0l_A 121 VQQLEAQMLQGVDINLAFLIRNNLELMVKNLS 152 (162)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 333333 2344578888888777777776553
No 256
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=53.77 E-value=13 Score=28.15 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=20.2
Q ss_pred cCCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 80 FHLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 80 F~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
+..++.|.|+.||++.+++.+.-+++
T Consensus 23 ~~~s~~eia~~lgl~~~tv~~~l~~L 48 (196)
T 3k2z_A 23 YPPSVREIARRFRITPRGALLHLIAL 48 (196)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCCcHHHHHHHHHH
Confidence 34788999999999988877765543
No 257
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=53.54 E-value=16 Score=25.63 Aligned_cols=24 Identities=8% Similarity=-0.143 Sum_probs=16.5
Q ss_pred hhcCCcHHHHHHHcCCChhHHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
.|-.+++.++|++.|||.++|-+.
T Consensus 19 G~~~~ti~~Ia~~agvs~~t~Y~~ 42 (194)
T 3bqz_B 19 GYNATTTGEIVKLSESSKGNLYYH 42 (194)
T ss_dssp TTTTCCHHHHHHHTTCCHHHHHHH
T ss_pred CCccCCHHHHHHHhCCCchhHHHh
Confidence 444677777788888877776443
No 258
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=53.38 E-value=20 Score=25.06 Aligned_cols=38 Identities=16% Similarity=0.143 Sum_probs=27.8
Q ss_pred cCCCCHHHHHh------hc-CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 68 TGKLTLRDLMI------YF-HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 68 ~~~lt~~~L~~------yF-~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
...||..++.- .- .+++.+.|+.||++.+++-++..++
T Consensus 34 ~~glt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~L 78 (150)
T 3fm5_A 34 PTGLRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDEL 78 (150)
T ss_dssp GGTCCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHH
Confidence 44566655541 11 3689999999999999988887766
No 259
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=53.38 E-value=22 Score=21.61 Aligned_cols=43 Identities=7% Similarity=-0.023 Sum_probs=33.6
Q ss_pred hccCCCCHHHHHhhcC--CcHHHHHHH----cCCChhHHHHHHHHcCCC
Q 041600 66 ERTGKLTLRDLMIYFH--LPIEEAARR----MKLCPTVVKKICRRDGLH 108 (160)
Q Consensus 66 ~r~~~lt~~~L~~yF~--lP~~eAA~~----Lgv~~T~LKr~CR~~GI~ 108 (160)
.....+|.++|....+ ++.....+- -.++..+|.++|..+|++
T Consensus 17 r~~~glsq~~lA~~~g~~is~~~i~~~e~g~~~~~~~~l~~la~~l~v~ 65 (71)
T 2ewt_A 17 RTQQGLSLHGVEEKSQGRWKAVVVGSYERGDRAVTVQRLAELADFYGVP 65 (71)
T ss_dssp HHHTTCCHHHHHHHTTTSSCHHHHHHHHHTCSCCCHHHHHHHHHHHTSC
T ss_pred HHHcCCCHHHHHHHHCCcCCHHHHHHHHCCCCCCCHHHHHHHHHHHCcC
Confidence 3445789999999988 888777662 346788899999999984
No 260
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=53.26 E-value=7.3 Score=30.58 Aligned_cols=25 Identities=8% Similarity=0.117 Sum_probs=21.9
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.|+..+.|+.||||.|++...-++|
T Consensus 51 ~L~e~~La~~lgVSRtpVREAL~~L 75 (239)
T 2hs5_A 51 RLSEPDICAALDVSRNTVREAFQIL 75 (239)
T ss_dssp EECHHHHHHHHTCCHHHHHHHHHHH
T ss_pred EeCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4799999999999999998887765
No 261
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=53.15 E-value=11 Score=26.34 Aligned_cols=75 Identities=20% Similarity=0.190 Sum_probs=46.5
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc---C-CCCChh----------------HHHhhHHHHHHHH-hhhccCCcHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD---G-LHRWPH----------------RKIKSIQRRMSVA-SGRLRSNDAEERAN 139 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~---G-I~RWPy----------------RkikSl~~~i~~L-~~~~~~~~~eerar 139 (160)
.+++.++|+.||++.+++-+..+++ | |.|-|. .-+..+...+..+ ...+..-++++.+.
T Consensus 51 ~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~ 130 (155)
T 1s3j_A 51 SLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEVLAGRKAIMARYLSFLTEEEMLQ 130 (155)
T ss_dssp EEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5789999999999988888777654 3 333331 1112222222222 22344567888888
Q ss_pred HHHHHHHHHHHHHHHh
Q 041600 140 AQIEIQRLQEEMAAAC 155 (160)
Q Consensus 140 ~~~eIerL~~Em~~~c 155 (160)
...-++++.+-+....
T Consensus 131 l~~~l~~l~~~l~~~~ 146 (155)
T 1s3j_A 131 AAHITAKLAQAAETDE 146 (155)
T ss_dssp HHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHhhcc
Confidence 8888888887776543
No 262
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=53.04 E-value=24 Score=22.77 Aligned_cols=43 Identities=14% Similarity=0.064 Sum_probs=35.8
Q ss_pred hccCCCCHHHHHhhcCCcHHHHHHHc-----CCChhHHHHHHHHcCCC
Q 041600 66 ERTGKLTLRDLMIYFHLPIEEAARRM-----KLCPTVVKKICRRDGLH 108 (160)
Q Consensus 66 ~r~~~lt~~~L~~yF~lP~~eAA~~L-----gv~~T~LKr~CR~~GI~ 108 (160)
.....+|..+|....+++...+.+-. .++..+|.++|+.+|+.
T Consensus 27 r~~~glsq~elA~~~gis~~~is~~e~g~~~~~~~~~l~~la~~l~~~ 74 (83)
T 2a6c_A 27 LRNSGLTQFKAAELLGVTQPRVSDLMRGKIDLFSLESLIDMITSIGLK 74 (83)
T ss_dssp HHTTTCCHHHHHHHHTSCHHHHHHHHTTCGGGCCHHHHHHHHHHTTCC
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHcCCC
Confidence 45568999999999999999988744 36778899999999984
No 263
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=52.86 E-value=15 Score=27.74 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=19.5
Q ss_pred HhhcCC--cHHHHHHHcCCC-hhHHHHH
Q 041600 77 MIYFHL--PIEEAARRMKLC-PTVVKKI 101 (160)
Q Consensus 77 ~~yF~l--P~~eAA~~Lgv~-~T~LKr~ 101 (160)
+.-.++ .+.|.|+.|||+ .+++.+.
T Consensus 19 ~~~~g~~ps~~elA~~lgiss~~tv~~~ 46 (202)
T 1jhf_A 19 ISQTGMPPTRAEIAQRLGFRSPNAAEEH 46 (202)
T ss_dssp HHHHSSCCCHHHHHHHTTCSSHHHHHHH
T ss_pred HHHhCCCccHHHHHHHhCCCChHHHHHH
Confidence 344477 799999999998 7877654
No 264
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=52.83 E-value=15 Score=25.11 Aligned_cols=25 Identities=8% Similarity=0.018 Sum_probs=20.2
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.+++.++|+.||++.+++-+...++
T Consensus 50 ~~t~~ela~~l~~s~~~vs~~l~~L 74 (142)
T 2fbi_A 50 EMESYQLANQACILRPSMTGVLARL 74 (142)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHhHHHHHHHHH
Confidence 5789999999999988877666543
No 265
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=52.79 E-value=14 Score=29.52 Aligned_cols=29 Identities=31% Similarity=0.247 Sum_probs=24.8
Q ss_pred hcCCcHHHHHHHcCCChhHHHHHHHHcCC
Q 041600 79 YFHLPIEEAARRMKLCPTVVKKICRRDGL 107 (160)
Q Consensus 79 yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI 107 (160)
-|+++..++|+.||+|.+++.+.-|=+++
T Consensus 132 ~~g~t~~~iA~~lG~s~~~V~~~l~l~~l 160 (230)
T 1vz0_A 132 EMGLTQEEVARRVGKARSTVANALRLLQL 160 (230)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHGGGS
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHcC
Confidence 36899999999999999999988766655
No 266
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=52.77 E-value=9.7 Score=25.47 Aligned_cols=24 Identities=17% Similarity=0.056 Sum_probs=20.0
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHc
Q 041600 82 LPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
+++.+.|+.||++.+++-++..++
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~L 54 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKF 54 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHH
Confidence 789999999999999988775543
No 267
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=52.75 E-value=17 Score=25.61 Aligned_cols=72 Identities=14% Similarity=0.088 Sum_probs=44.1
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc---C-CCCCh---------h-------HHHhhHHHHHHHHh-hhccCCcHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD---G-LHRWP---------H-------RKIKSIQRRMSVAS-GRLRSNDAEERAN 139 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~---G-I~RWP---------y-------RkikSl~~~i~~L~-~~~~~~~~eerar 139 (160)
.+++.++|+.||++.+++-+..+++ | |.|-| + .-+..+...+..+. ..+..-++++...
T Consensus 58 ~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~ 137 (154)
T 2eth_A 58 PKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEILSNFESLLKSVLEKFSEEDFKV 137 (154)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5789999999999988887776654 3 33322 0 11222222222222 2334557788888
Q ss_pred HHHHHHHHHHHHH
Q 041600 140 AQIEIQRLQEEMA 152 (160)
Q Consensus 140 ~~~eIerL~~Em~ 152 (160)
...-++++.+-+.
T Consensus 138 l~~~L~~l~~~l~ 150 (154)
T 2eth_A 138 VSEGFNRMVEALS 150 (154)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888887776654
No 268
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=52.73 E-value=49 Score=25.59 Aligned_cols=62 Identities=8% Similarity=0.125 Sum_probs=38.0
Q ss_pred HHHcCCChhHHHHHHHHcCCCCC------hhHHHhhHHHHHHHHhhh-c-----------------cCCcHHHHHHHHHH
Q 041600 88 ARRMKLCPTVVKKICRRDGLHRW------PHRKIKSIQRRMSVASGR-L-----------------RSNDAEERANAQIE 143 (160)
Q Consensus 88 A~~Lgv~~T~LKr~CR~~GI~RW------PyRkikSl~~~i~~L~~~-~-----------------~~~~~eerar~~~e 143 (160)
..--||+.++=+.+|+++||... .--.+.+|...|++...+ + -.-..+=+....+.
T Consensus 33 t~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~~p~~~~iP~w~lNr~kD~~~G~~~~~ie~dLr~~~~~d 112 (155)
T 2xzm_M 33 TGIRGIGRRFAYIICKVLKIDPNARAGLLTEDQCNKITDLIADPEAHGIPTWLLNRINDFKDGKNYQMASNTLDTKMRED 112 (155)
T ss_dssp TTSTTCCHHHHHHHHHHTTCCSSSCSSCSCHHHHHHHHHHHHSHHHHCCCGGGCSEEEETTTEEEECCCHHHHHHHHHHH
T ss_pred ecccccCHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHhCccccCCCHHHhhcccccCCCceeEEecHHHHHHHHHh
Confidence 44679999999999999999642 334444454444432111 0 01234446677788
Q ss_pred HHHHHH
Q 041600 144 IQRLQE 149 (160)
Q Consensus 144 IerL~~ 149 (160)
|++|+.
T Consensus 113 I~Rl~~ 118 (155)
T 2xzm_M 113 LERLKK 118 (155)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 888764
No 269
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=52.45 E-value=46 Score=23.87 Aligned_cols=73 Identities=14% Similarity=0.129 Sum_probs=47.1
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHc---C-CCCChh----------------HHHhhHHHHHHHHhh-hccCCcHHHHHHH
Q 041600 82 LPIEEAARRMKLCPTVVKKICRRD---G-LHRWPH----------------RKIKSIQRRMSVASG-RLRSNDAEERANA 140 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~CR~~---G-I~RWPy----------------RkikSl~~~i~~L~~-~~~~~~~eerar~ 140 (160)
.++.+.|+.|||+.+++-++..++ | |.|-|. .-+..+...+..+.. .+..-+++|++..
T Consensus 47 ~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l 126 (151)
T 4aik_A 47 QSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIEQVDGVISSTRKEILGGISSDEIAVL 126 (151)
T ss_dssp SCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHHHHHHHHHHHHHHHTTTSCHHHHHHH
T ss_pred CcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 667899999999988888777655 4 333321 123334444444433 3445688888888
Q ss_pred HHHHHHHHHHHHHH
Q 041600 141 QIEIQRLQEEMAAA 154 (160)
Q Consensus 141 ~~eIerL~~Em~~~ 154 (160)
..-++++.+-+.++
T Consensus 127 ~~~L~kl~~nl~~l 140 (151)
T 4aik_A 127 SGLIDKLEKNIIQL 140 (151)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877766543
No 270
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=52.35 E-value=23 Score=21.59 Aligned_cols=43 Identities=9% Similarity=0.012 Sum_probs=33.0
Q ss_pred hccCCCCHHHHHhhcCCcHHHHHHHc----CCChhHHHHHHHHcCCC
Q 041600 66 ERTGKLTLRDLMIYFHLPIEEAARRM----KLCPTVVKKICRRDGLH 108 (160)
Q Consensus 66 ~r~~~lt~~~L~~yF~lP~~eAA~~L----gv~~T~LKr~CR~~GI~ 108 (160)
.....+|..+|....+++.....+-. .++..++.++|+.+|++
T Consensus 22 r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~l~~~l~~~ 68 (74)
T 1y7y_A 22 RTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIE 68 (74)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTSC
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCcC
Confidence 34457889999999898888887632 35677888999998884
No 271
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=52.34 E-value=8.6 Score=26.41 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=20.3
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.+++.+.|+.||++.+++-++..++
T Consensus 41 ~~t~~ela~~l~~~~stvs~~l~~L 65 (152)
T 1ku9_A 41 PLTISDIMEELKISKGNVSMSLKKL 65 (152)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4789999999999988877766643
No 272
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=52.20 E-value=13 Score=27.02 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=20.1
Q ss_pred CCcHHHHHHHcCCChhHHH----HHHHHcCC
Q 041600 81 HLPIEEAARRMKLCPTVVK----KICRRDGL 107 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LK----r~CR~~GI 107 (160)
+++.+++|+.||+|..|++ ++.+++|+
T Consensus 157 g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl~~ 187 (208)
T 1yio_A 157 GLMNKQIAGELGIAEVTVKVHRHNIMQKLNV 187 (208)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 5788899999999987774 55555554
No 273
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=52.17 E-value=9.1 Score=27.93 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=20.6
Q ss_pred cCCcHHHHHHHcCCChhHHHHHHHH
Q 041600 80 FHLPIEEAARRMKLCPTVVKKICRR 104 (160)
Q Consensus 80 F~lP~~eAA~~Lgv~~T~LKr~CR~ 104 (160)
+.+|+++.|..||+++.+|-|+-++
T Consensus 162 ~~~t~~~lA~~lg~sr~tvsR~l~~ 186 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVSRVLHA 186 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 4689999999999998888777543
No 274
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=52.08 E-value=10 Score=27.74 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=25.4
Q ss_pred cCCcHHHHHHHcCCChhHHHHHHH---HcCCCCChhHHH
Q 041600 80 FHLPIEEAARRMKLCPTVVKKICR---RDGLHRWPHRKI 115 (160)
Q Consensus 80 F~lP~~eAA~~Lgv~~T~LKr~CR---~~GI~RWPyRki 115 (160)
+.+|+.+.|..||+++.+|-|+-+ +.|+-+.-+++|
T Consensus 168 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i 206 (220)
T 3dv8_A 168 LKITHETIANHLGSHREVITRMLRYFQVEGLVKLSRGKI 206 (220)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEE
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCCCEE
Confidence 478999999999999888877654 345544444443
No 275
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=52.03 E-value=40 Score=22.69 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=14.2
Q ss_pred HHHHHHHcCCChhHHHHH
Q 041600 84 IEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 84 ~~eAA~~Lgv~~T~LKr~ 101 (160)
..+.|..||++.+.+|--
T Consensus 51 r~~La~~lgL~e~qVkvW 68 (80)
T 1wh7_A 51 VEQFCAETGVRRQVLKIW 68 (80)
T ss_dssp HHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHhCcCcCccccc
Confidence 456699999999998843
No 276
>1pm6_A Excisionase; antiparallel beta-sheet, winged-helix, CIS-trans-trans triproline, gene regulation; NMR {Enterobacteria phage HK022} SCOP: a.6.1.7
Probab=52.01 E-value=9.8 Score=25.98 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=23.8
Q ss_pred CcHHHHHHHc--CCChhHHHHHHHHcCC
Q 041600 82 LPIEEAARRM--KLCPTVVKKICRRDGL 107 (160)
Q Consensus 82 lP~~eAA~~L--gv~~T~LKr~CR~~GI 107 (160)
+++.|.|+.+ .+|..||.+.+|+-.|
T Consensus 3 lTl~EwA~~~~~~~s~~Tl~r~ar~G~I 30 (72)
T 1pm6_A 3 LTLQEWNARQRRPRSLETVRRWVRESRI 30 (72)
T ss_dssp EEHHHHHHHSSSCCCHHHHHHHHHHTCE
T ss_pred eeHHHHHHHhcCCCCHHHHHHHHHCCCC
Confidence 6899999999 7899999999998877
No 277
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=51.92 E-value=8.7 Score=29.82 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=20.0
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHc
Q 041600 82 LPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
+++.+||+.|||+.+++-+..+++
T Consensus 28 ~s~s~aA~~L~isq~avSr~I~~L 51 (230)
T 3cta_A 28 LTSSKLADMLGISQQSASRIIIDL 51 (230)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHH
Confidence 669999999999999988775543
No 278
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=51.66 E-value=12 Score=26.82 Aligned_cols=35 Identities=11% Similarity=0.090 Sum_probs=17.4
Q ss_pred CCChhHHHHHHHHcCCCC-ChhHHHhhHHHHHHHHh
Q 041600 92 KLCPTVVKKICRRDGLHR-WPHRKIKSIQRRMSVAS 126 (160)
Q Consensus 92 gv~~T~LKr~CR~~GI~R-WPyRkikSl~~~i~~L~ 126 (160)
|+..+++..||++.||++ ==|+...|.+.++..+-
T Consensus 34 G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~ 69 (218)
T 3gzi_A 34 PYAQVSIREIASLAGTDPGLIRYYFGSKEKLFSTMI 69 (218)
T ss_dssp CCSCCCHHHHHHHHTSCTHHHHHHHSSHHHHHHHHH
T ss_pred CCCcCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 444444444444444433 22566666666555543
No 279
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=51.53 E-value=49 Score=21.78 Aligned_cols=75 Identities=4% Similarity=-0.067 Sum_probs=48.4
Q ss_pred ccCCCCHHHHHhhcCCcHHH----HHH----HcCCChhHHHHHHHHcCCCCChhHHHhhHHHHHHHHhhhccCCcHHHHH
Q 041600 67 RTGKLTLRDLMIYFHLPIEE----AAR----RMKLCPTVVKKICRRDGLHRWPHRKIKSIQRRMSVASGRLRSNDAEERA 138 (160)
Q Consensus 67 r~~~lt~~~L~~yF~lP~~e----AA~----~Lgv~~T~LKr~CR~~GI~RWPyRkikSl~~~i~~L~~~~~~~~~eera 138 (160)
....+|..+|....+++... ..+ .-..+..+|.++|.-+|++-.= +-.-......+-..+..-+++++.
T Consensus 11 ~~~glsq~~lA~~~gis~~~~~~~is~~E~g~~~p~~~~l~~la~~l~v~~~~---l~~~~~~~~~~~~~~~~l~~~~~~ 87 (98)
T 3lfp_A 11 LRAGISQEKLGVLAGIDEASASARMNQYEKGKHAPDFEMANRLAKVLKIPVSY---LYTPEDDLAQIILTWNELNEQERK 87 (98)
T ss_dssp HHHTCCHHHHHHHTTCCHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHTSCGGG---GGCCCHHHHHHHHHHTTCCHHHHH
T ss_pred HHcCCCHHHHHHHhCCCcchhhhHHHHHHCCCCCCCHHHHHHHHHHHCcCHHH---HhCCChhHHHHHHHHHhCCHHHHH
Confidence 34678999999999999877 555 2357889999999999995421 111122233344445555667766
Q ss_pred HHHHHHH
Q 041600 139 NAQIEIQ 145 (160)
Q Consensus 139 r~~~eIe 145 (160)
.+ ..|+
T Consensus 88 ~~-~~l~ 93 (98)
T 3lfp_A 88 RI-NFYI 93 (98)
T ss_dssp HH-HHHH
T ss_pred HH-HHHH
Confidence 65 4443
No 280
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=51.30 E-value=11 Score=27.28 Aligned_cols=33 Identities=9% Similarity=0.003 Sum_probs=26.4
Q ss_pred HHHHHhhc--CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 73 LRDLMIYF--HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 73 ~~~L~~yF--~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
++.+..+. .++..|||+..|||.+++.+-+|.+
T Consensus 40 ~~VV~~v~~g~lS~~EAa~ry~Is~~ei~~W~r~y 74 (101)
T 2oa4_A 40 IAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSAL 74 (101)
T ss_dssp HHHHHHHHHTTCCHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 34444444 6999999999999999999888765
No 281
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=51.22 E-value=22 Score=24.14 Aligned_cols=43 Identities=14% Similarity=0.043 Sum_probs=36.0
Q ss_pred hccCCCCHHHHHhhcCCcHHHHHHHc---CCChhHHHHHHHHcCCC
Q 041600 66 ERTGKLTLRDLMIYFHLPIEEAARRM---KLCPTVVKKICRRDGLH 108 (160)
Q Consensus 66 ~r~~~lt~~~L~~yF~lP~~eAA~~L---gv~~T~LKr~CR~~GI~ 108 (160)
.+...+|..+|....+++...+.+-. .++..+|.++|.-+|++
T Consensus 33 R~~~glTq~eLA~~~GiS~~tis~iE~G~~~s~~~l~kIa~~L~v~ 78 (88)
T 3t76_A 33 LIDRDMKKGELREAVGVSKSTFAKLGKNENVSLTVLLAICEYLNCD 78 (88)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHTTCCCCHHHHHHHHHHHTCC
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcCCCcCHHHHHHHHHHHCcC
Confidence 55678999999999999988887632 37899999999999985
No 282
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=50.82 E-value=25 Score=21.62 Aligned_cols=42 Identities=12% Similarity=0.083 Sum_probs=32.6
Q ss_pred ccCCCCHHHHHhhcCCcHHHHHHHc----CCChhHHHHHHHHcCCC
Q 041600 67 RTGKLTLRDLMIYFHLPIEEAARRM----KLCPTVVKKICRRDGLH 108 (160)
Q Consensus 67 r~~~lt~~~L~~yF~lP~~eAA~~L----gv~~T~LKr~CR~~GI~ 108 (160)
....+|..+|....+++...+.+-. .++..++.++|+.+|++
T Consensus 20 ~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~la~~l~~~ 65 (77)
T 2b5a_A 20 TQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIP 65 (77)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCC
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCcC
Confidence 3457889999988888888887633 45678888999999883
No 283
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=50.69 E-value=11 Score=26.95 Aligned_cols=20 Identities=5% Similarity=0.104 Sum_probs=10.7
Q ss_pred hcCCcHHHHHHHcCCChhHH
Q 041600 79 YFHLPIEEAARRMKLCPTVV 98 (160)
Q Consensus 79 yF~lP~~eAA~~Lgv~~T~L 98 (160)
|-..++.++|++.|||..+|
T Consensus 25 ~~~~s~~~IA~~aGvs~~tl 44 (178)
T 4hku_A 25 MEKTTLYDIASNLNVTHAAL 44 (178)
T ss_dssp GGGCCHHHHHHHTTSCGGGG
T ss_pred cccccHHHHHHHhCcCHhHH
Confidence 33455555555555555554
No 284
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=50.68 E-value=13 Score=29.85 Aligned_cols=38 Identities=18% Similarity=0.098 Sum_probs=27.3
Q ss_pred CCCHHHHH----hhcCCcHHHHHHHcCCChhHHHH----HHHHcCC
Q 041600 70 KLTLRDLM----IYFHLPIEEAARRMKLCPTVVKK----ICRRDGL 107 (160)
Q Consensus 70 ~lt~~~L~----~yF~lP~~eAA~~Lgv~~T~LKr----~CR~~GI 107 (160)
.||-.+.. -.-+++.+|+|+.||||..|+|. +.+++|+
T Consensus 197 ~Lt~re~~vl~~~~~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~~ 242 (265)
T 3qp6_A 197 PLSQREYDIFHWMSRGKTNWEIATILNISERTVKFHVANVIRKLNA 242 (265)
T ss_dssp CCCHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 56766654 23389999999999999877664 4555555
No 285
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=50.61 E-value=2.1 Score=31.72 Aligned_cols=31 Identities=26% Similarity=0.223 Sum_probs=24.1
Q ss_pred HHHhhcCCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 75 DLMIYFHLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 75 ~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.|..--.+|..+.|+.||||.|++.+..+++
T Consensus 21 ~l~~~~~ls~~eLa~~lgvSr~~vr~al~~L 51 (163)
T 2gqq_A 21 ELQKDGRISNVELSKRVGLSPTPCLERVRRL 51 (163)
T ss_dssp HHHHCSSCCTTGGGTSSSCCTTTSSSTHHHH
T ss_pred HHHhCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4555556899999999999999887765543
No 286
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=50.60 E-value=3.3 Score=32.91 Aligned_cols=30 Identities=20% Similarity=0.071 Sum_probs=0.0
Q ss_pred CHHHHHhhcCCcHHHHHHHcCCChhHHHHH
Q 041600 72 TLRDLMIYFHLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 72 t~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
.+..++.--++++.+.|+.+|||.+++.++
T Consensus 34 ~l~~~r~~~g~t~~~la~~~g~s~~~is~~ 63 (311)
T 4ich_A 34 RVRGLIHSRPGAQREFAAAIGLDESKLSKS 63 (311)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHCCCCHHHHHHHhCCCHHHHHHH
Confidence 355667777899999999999987777766
No 287
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=50.43 E-value=10 Score=27.47 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=19.7
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRR 104 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~ 104 (160)
.+|+.+.|..||+++.+|-|+-++
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~ 187 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKS 187 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHH
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHH
Confidence 589999999999998888776543
No 288
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=50.40 E-value=10 Score=27.56 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=20.7
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.+|+.+.|..||+++.++-|+-+++
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L 191 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKML 191 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHH
Confidence 5889999999999998888775443
No 289
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=50.38 E-value=18 Score=24.66 Aligned_cols=25 Identities=8% Similarity=0.056 Sum_probs=20.4
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.+++.+.|+.||++.+++-++.+++
T Consensus 48 ~~~~~~la~~l~~~~~tvs~~l~~L 72 (138)
T 1jgs_A 48 CITPVELKKVLSVDLGALTRMLDRL 72 (138)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCChHHHHHHHHHH
Confidence 5789999999999988887776544
No 290
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=50.31 E-value=20 Score=27.64 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=19.0
Q ss_pred HHHcCCChhHHHHHHHHcCCCC
Q 041600 88 ARRMKLCPTVVKKICRRDGLHR 109 (160)
Q Consensus 88 A~~Lgv~~T~LKr~CR~~GI~R 109 (160)
..--||+.++=+.+|+++||..
T Consensus 26 t~I~GIG~~~A~~I~~~~gid~ 47 (148)
T 3j20_O 26 TAIKGIGINFATMVCRVAGLDP 47 (148)
T ss_dssp HHSTTCCHHHHHHHHHHHTCCS
T ss_pred hhccCcCHHHHHHHHHHhCCCC
Confidence 4556999999999999999964
No 291
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=50.26 E-value=9.6 Score=27.51 Aligned_cols=33 Identities=6% Similarity=0.060 Sum_probs=16.1
Q ss_pred CCChhHHHHHHHHcCCCCCh-hHHHhhHHHHHHH
Q 041600 92 KLCPTVVKKICRRDGLHRWP-HRKIKSIQRRMSV 124 (160)
Q Consensus 92 gv~~T~LKr~CR~~GI~RWP-yRkikSl~~~i~~ 124 (160)
|...++++.+|++.||++=- |+..++.+.++..
T Consensus 29 G~~~~ti~~Ia~~agvs~~t~Y~~F~~K~~L~~~ 62 (189)
T 3vp5_A 29 SFHEAKIMHIVKALDIPRGSFYQYFEDLKDAYFY 62 (189)
T ss_dssp CTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred CcccccHHHHHHHhCCChHHHHHHCCCHHHHHHH
Confidence 44444555555555554422 5555555544443
No 292
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=50.23 E-value=27 Score=22.02 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=34.5
Q ss_pred hccCCCCHHHHHhhcCCcHHHHHHH----cCCChhHHHHHHHHcCCC
Q 041600 66 ERTGKLTLRDLMIYFHLPIEEAARR----MKLCPTVVKKICRRDGLH 108 (160)
Q Consensus 66 ~r~~~lt~~~L~~yF~lP~~eAA~~----Lgv~~T~LKr~CR~~GI~ 108 (160)
.....+|..+|....+++.....+- -.++..+|.++|+-+|+.
T Consensus 23 R~~~gltq~elA~~~gis~~~is~~e~g~~~~~~~~l~~l~~~l~~~ 69 (83)
T 3f6w_A 23 RSAAGITQKELAARLGRPQSFVSKTENAERRLDVIEFMDFCRGIGTD 69 (83)
T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCC
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCC
Confidence 3445789999999999998888773 346788999999999983
No 293
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=50.10 E-value=10 Score=25.25 Aligned_cols=24 Identities=13% Similarity=0.271 Sum_probs=19.2
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRR 104 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~ 104 (160)
.++..|.|+.||+|.+++.+.-+.
T Consensus 36 ~~~~~ela~~l~is~~tvs~~L~~ 59 (98)
T 3jth_A 36 ELSVGELCAKLQLSQSALSQHLAW 59 (98)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 477899999999998888766543
No 294
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=50.08 E-value=30 Score=21.39 Aligned_cols=43 Identities=7% Similarity=-0.149 Sum_probs=35.4
Q ss_pred hccCCCCHHHHHhhcCCcHHHHHHHc----CCChhHHHHHHHHcCCC
Q 041600 66 ERTGKLTLRDLMIYFHLPIEEAARRM----KLCPTVVKKICRRDGLH 108 (160)
Q Consensus 66 ~r~~~lt~~~L~~yF~lP~~eAA~~L----gv~~T~LKr~CR~~GI~ 108 (160)
.....+|..+|....+++...+.+-. .++..+|.++|.-+|++
T Consensus 17 r~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ia~~l~v~ 63 (73)
T 3omt_A 17 LAEKGKTNLWLTETLDKNKTTVSKWCTNDVQPSLETLFDIAEALNVD 63 (73)
T ss_dssp HHHHTCCHHHHHHHTTCCHHHHHHHHTTSSCCCHHHHHHHHHHHTSC
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcC
Confidence 34567899999999999998887733 46788999999999985
No 295
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=50.07 E-value=28 Score=24.13 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=20.9
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.+++.+.|+.||++.+++-++..++
T Consensus 50 ~~t~~eLa~~l~~~~~tvs~~l~~L 74 (140)
T 3hsr_A 50 KLNIKKLGERVFLDSGTLTPLLKKL 74 (140)
T ss_dssp EEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhhHHHHHHHH
Confidence 4789999999999998888877654
No 296
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=50.05 E-value=11 Score=28.73 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=23.3
Q ss_pred CCCHHHHHhhc----CCcHHHHHHHcCCChhHHHHH
Q 041600 70 KLTLRDLMIYF----HLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 70 ~lt~~~L~~yF----~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
.+++..|+-+. +-.+..||++||||.++|-+.
T Consensus 5 ~m~l~~L~~f~~v~~~gs~s~AA~~L~isq~avS~~ 40 (303)
T 3isp_A 5 QLDGPQLAALAAVVELGSFDAAAERLHVTPSAVSQR 40 (303)
T ss_dssp CCCSHHHHHHHHHHHHTCHHHHHTTTTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHhCCChHHHHHH
Confidence 45566655322 567899999999999988654
No 297
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=50.05 E-value=17 Score=25.72 Aligned_cols=23 Identities=4% Similarity=0.092 Sum_probs=16.2
Q ss_pred hhcCCcHHHHHHHcCCChhHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKK 100 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr 100 (160)
.|-..++.++|++.|||..+|-+
T Consensus 24 G~~~~t~~~IA~~agvs~~tlY~ 46 (192)
T 2zcm_A 24 GYDGTTLDDISKSVNIKKASLYY 46 (192)
T ss_dssp CTTTCCHHHHHHHTTCCHHHHHH
T ss_pred CcccCCHHHHHHHhCCChHHHHH
Confidence 44467788888888888777643
No 298
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=49.86 E-value=22 Score=26.60 Aligned_cols=24 Identities=8% Similarity=0.146 Sum_probs=17.9
Q ss_pred hhcCCcHHHHHHHcCCChhHHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
.|-...+.++|++.|||..+|-+.
T Consensus 35 G~~~~t~~~IA~~aGvs~~tlY~~ 58 (251)
T 3npi_A 35 GFSDAKLEAIAKKSGMSKRMIHYH 58 (251)
T ss_dssp HHHHCCHHHHHHHHCCCHHHHHHH
T ss_pred CccccCHHHHHHHHCCCHHHHHHH
Confidence 455788888888888888877443
No 299
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=49.74 E-value=58 Score=22.14 Aligned_cols=74 Identities=8% Similarity=0.013 Sum_probs=44.6
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc---C-CCCChh----------------HHHhhHHHHHHHHh-hhccCCcHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD---G-LHRWPH----------------RKIKSIQRRMSVAS-GRLRSNDAEERAN 139 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~---G-I~RWPy----------------RkikSl~~~i~~L~-~~~~~~~~eerar 139 (160)
.+++.+.|+.||++.+++-+..+++ | |.|-|. .-+..+...+..+. ..+..-++++...
T Consensus 50 ~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~ 129 (146)
T 2gxg_A 50 PKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNKGIEIYKKLANEVTGDLSEDEVIL 129 (146)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHH
T ss_pred CcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4789999999999988876666543 3 333321 11122222222222 2334457888888
Q ss_pred HHHHHHHHHHHHHHH
Q 041600 140 AQIEIQRLQEEMAAA 154 (160)
Q Consensus 140 ~~~eIerL~~Em~~~ 154 (160)
...-++++.+-+.++
T Consensus 130 l~~~l~~~~~~l~~~ 144 (146)
T 2gxg_A 130 VLDKISKILKRIEEI 144 (146)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 888888887776654
No 300
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=49.67 E-value=11 Score=26.64 Aligned_cols=23 Identities=4% Similarity=0.161 Sum_probs=13.8
Q ss_pred hhcCCcHHHHHHHcCCChhHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKK 100 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr 100 (160)
.|-.+++.++|++.|||..+|-+
T Consensus 31 G~~~~ti~~Ia~~agvs~~t~Y~ 53 (203)
T 3f1b_A 31 GFHETSMDAIAAKAEISKPMLYL 53 (203)
T ss_dssp CTTTCCHHHHHHHTTSCHHHHHH
T ss_pred CcccccHHHHHHHhCCchHHHHH
Confidence 33456666666666666666543
No 301
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=49.64 E-value=17 Score=25.40 Aligned_cols=23 Identities=13% Similarity=0.223 Sum_probs=15.6
Q ss_pred hhcCCcHHHHHHHcCCChhHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKK 100 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr 100 (160)
.|-.+.+.++|++.|||..+|-+
T Consensus 25 G~~~~t~~~Ia~~agvs~~t~Y~ 47 (206)
T 3dew_A 25 GFYGVSIRELAQAAGASISMISY 47 (206)
T ss_dssp CGGGCCHHHHHHHHTCCHHHHHH
T ss_pred CcccCcHHHHHHHhCCCHHHHHH
Confidence 34467777777777777776643
No 302
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=49.61 E-value=29 Score=21.41 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=34.1
Q ss_pred hccCCCCHHHHHhhcCCcHHHHHHH----c-CCChhHHHHHHHHcCCC
Q 041600 66 ERTGKLTLRDLMIYFHLPIEEAARR----M-KLCPTVVKKICRRDGLH 108 (160)
Q Consensus 66 ~r~~~lt~~~L~~yF~lP~~eAA~~----L-gv~~T~LKr~CR~~GI~ 108 (160)
.....+|..+|....+++.....+- - .++..+|.++|..+|++
T Consensus 16 r~~~g~sq~~lA~~~gis~~~i~~~e~g~~~~~~~~~l~~ia~~l~~~ 63 (78)
T 3b7h_A 16 ITQQNLTINRVATLAGLNQSTVNAMFEGRSKRPTITTIRKVCGTLGIS 63 (78)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHCTTCCCCCHHHHHHHHHHHTCC
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHcCCC
Confidence 3445789999999999998888773 2 46678899999999984
No 303
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=49.44 E-value=12 Score=27.52 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=20.2
Q ss_pred cCCcHHHHHHHcCCChhHHHHHHHH
Q 041600 80 FHLPIEEAARRMKLCPTVVKKICRR 104 (160)
Q Consensus 80 F~lP~~eAA~~Lgv~~T~LKr~CR~ 104 (160)
+.+++.+.|..||+++.++-|+-++
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~ 190 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLND 190 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHH
Confidence 3588999999999998887776543
No 304
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=49.44 E-value=16 Score=27.61 Aligned_cols=22 Identities=9% Similarity=0.095 Sum_probs=19.3
Q ss_pred CcHHHHHHHcCCChhHHHHHHH
Q 041600 82 LPIEEAARRMKLCPTVVKKICR 103 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~CR 103 (160)
++..|.|+.||||.+|+.|.-+
T Consensus 37 ~s~~eLa~~l~vS~~Ti~rdi~ 58 (187)
T 1j5y_A 37 VSGAQLAEELSVSRQVIVQDIA 58 (187)
T ss_dssp BCHHHHHHHHTSCHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHH
Confidence 8999999999999998887654
No 305
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=49.31 E-value=16 Score=25.26 Aligned_cols=33 Identities=12% Similarity=0.160 Sum_probs=21.4
Q ss_pred HHcCCCh-hHHHHHHHHcCCCCChhHHHhhHHHHHHHHhh
Q 041600 89 RRMKLCP-TVVKKICRRDGLHRWPHRKIKSIQRRMSVASG 127 (160)
Q Consensus 89 ~~Lgv~~-T~LKr~CR~~GI~RWPyRkikSl~~~i~~L~~ 127 (160)
..|+-+- ||.+.|.|++|+++ +.+++.+-+|+.
T Consensus 22 ~~L~~~~~~Ta~~IAkkLg~sK------~~vNr~LY~L~k 55 (75)
T 1sfu_A 22 LSLNTNDYTTAISLSNRLKINK------KKINQQLYKLQK 55 (75)
T ss_dssp HTSCTTCEECHHHHHHHTTCCH------HHHHHHHHHHHH
T ss_pred HhCCCCcchHHHHHHHHHCCCH------HHHHHHHHHHHH
Confidence 4566665 77777777777743 446666666654
No 306
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=49.23 E-value=15 Score=26.01 Aligned_cols=83 Identities=11% Similarity=0.076 Sum_probs=48.1
Q ss_pred CCCCHHHHH------hhcCCcHHHHHHHcCCChhHHHHHHHHc---C-CCCChh----------------HHHhhHHHHH
Q 041600 69 GKLTLRDLM------IYFHLPIEEAARRMKLCPTVVKKICRRD---G-LHRWPH----------------RKIKSIQRRM 122 (160)
Q Consensus 69 ~~lt~~~L~------~yF~lP~~eAA~~Lgv~~T~LKr~CR~~---G-I~RWPy----------------RkikSl~~~i 122 (160)
..+|..++. ..=.+++.++|+.|||+.+++-++.+++ | |.|-|. .-+..+....
T Consensus 48 ~~lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~ 127 (162)
T 3cjn_A 48 LGLSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDRLWPHM 127 (162)
T ss_dssp HTCCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHHHHH
Confidence 346655544 2224789999999999988887777654 3 333321 1122222222
Q ss_pred HHHh-hhccCCcHHHHHHHHHHHHHHHHHH
Q 041600 123 SVAS-GRLRSNDAEERANAQIEIQRLQEEM 151 (160)
Q Consensus 123 ~~L~-~~~~~~~~eerar~~~eIerL~~Em 151 (160)
..+. ..+..-++++......-++++.+-+
T Consensus 128 ~~~~~~~~~~l~~~e~~~l~~~l~~l~~~l 157 (162)
T 3cjn_A 128 RASHDRMFQGITPQERQAFLATLNKMLANI 157 (162)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 2222 2334457777777777777776554
No 307
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=49.18 E-value=17 Score=23.42 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=19.1
Q ss_pred cCCcHHHHHHHc-----CCChhHHHHHH
Q 041600 80 FHLPIEEAARRM-----KLCPTVVKKIC 102 (160)
Q Consensus 80 F~lP~~eAA~~L-----gv~~T~LKr~C 102 (160)
-++++.|+++.| +||.+|+-|.-
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L 59 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVL 59 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHH
Confidence 368899999999 99999987653
No 308
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=49.16 E-value=15 Score=29.17 Aligned_cols=30 Identities=10% Similarity=0.191 Sum_probs=24.7
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHH
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKIC 102 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~C 102 (160)
+.++..-.++++.++|+.+|||.+++-++-
T Consensus 35 Ik~~l~~~gitQ~~lA~~~GiSqs~ISr~l 64 (194)
T 1ic8_A 35 VKSYLQQHNIPQREVVDTTGLNQSHLSQHL 64 (194)
T ss_dssp HHHHHHHTTCCHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHhCCChHHHHHHH
Confidence 344445569999999999999999999884
No 309
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=49.08 E-value=10 Score=28.49 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=17.9
Q ss_pred CCcHHHHHHHcCCChhHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
+-.+..||++||||.++|-+.
T Consensus 15 ~gs~s~AA~~L~isq~avS~~ 35 (294)
T 1ixc_A 15 AGNMAAAAKRLHVSQPPITRQ 35 (294)
T ss_dssp HSSHHHHHHHHTCCHHHHHHH
T ss_pred cCCHHHHHHHhCCCcchHHHH
Confidence 467899999999999988655
No 310
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=49.04 E-value=11 Score=27.33 Aligned_cols=23 Identities=9% Similarity=-0.022 Sum_probs=15.3
Q ss_pred hhcCCcHHHHHHHcCCChhHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKK 100 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr 100 (160)
.|-..++.++|++.|||..+|-+
T Consensus 25 G~~~~s~~~IA~~aGvs~~tiY~ 47 (202)
T 2d6y_A 25 GIAGARIDRIAAEARANKQLIYA 47 (202)
T ss_dssp TTTSCCHHHHHHHHTCCHHHHHH
T ss_pred CcccCCHHHHHHHhCCCHHHHHH
Confidence 44467777777777777666643
No 311
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=49.02 E-value=21 Score=26.31 Aligned_cols=24 Identities=8% Similarity=-0.007 Sum_probs=18.3
Q ss_pred hhcCCcHHHHHHHcCCChhHHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
.|-..++.++|++.|||..+|-+.
T Consensus 47 G~~~~s~~~IA~~aGvs~~tlY~~ 70 (226)
T 2pz9_A 47 GIAGARVDRIAKQARTSKERVYAY 70 (226)
T ss_dssp HHHHCCHHHHHHHTTSCHHHHHHH
T ss_pred CcccCcHHHHHHHHCCChHHHHHH
Confidence 445688899999999988877543
No 312
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=49.00 E-value=11 Score=26.80 Aligned_cols=23 Identities=13% Similarity=0.034 Sum_probs=14.5
Q ss_pred hhcCCcHHHHHHHcCCChhHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKK 100 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr 100 (160)
.|-.+.+.++|++.|||..+|-+
T Consensus 35 G~~~~s~~~Ia~~agvs~~t~Y~ 57 (212)
T 1pb6_A 35 GFHGTRLEQIAELAGVSKTNLLY 57 (212)
T ss_dssp CTTTCCHHHHHHHTTSCHHHHHH
T ss_pred CcchhhHHHHHHHHCCChhHHHH
Confidence 34456677777777777666643
No 313
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=48.95 E-value=45 Score=22.79 Aligned_cols=42 Identities=7% Similarity=0.260 Sum_probs=31.3
Q ss_pred HHHhhHHHHHHHHhhhccC-----CcHHHHHHHHHHHHHHHHHHHHH
Q 041600 113 RKIKSIQRRMSVASGRLRS-----NDAEERANAQIEIQRLQEEMAAA 154 (160)
Q Consensus 113 RkikSl~~~i~~L~~~~~~-----~~~eerar~~~eIerL~~Em~~~ 154 (160)
.+|..|...|..|+..+.. .|++.-+.+..+++.+++++..+
T Consensus 29 ~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 29 QLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777788888777632 46777778888899888888764
No 314
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=48.91 E-value=13 Score=25.26 Aligned_cols=70 Identities=11% Similarity=0.110 Sum_probs=40.0
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc---C-CCCChh----------------HHHhhHHHHHHHHh-hhccCCcHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD---G-LHRWPH----------------RKIKSIQRRMSVAS-GRLRSNDAEERAN 139 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~---G-I~RWPy----------------RkikSl~~~i~~L~-~~~~~~~~eerar 139 (160)
.+++.++|+.||++.+++-+..+++ | |.|-|. .-+..+...+..+. ..+..-++++.+.
T Consensus 47 ~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~ 126 (139)
T 3bja_A 47 KVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQVDVQYSDFLKENCGCFTKEEEGI 126 (139)
T ss_dssp SEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHH
T ss_pred CcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4789999999999988777666543 3 333221 11112222222222 2234457777777
Q ss_pred HHHHHHHHHHH
Q 041600 140 AQIEIQRLQEE 150 (160)
Q Consensus 140 ~~~eIerL~~E 150 (160)
...-++++.+-
T Consensus 127 l~~~l~~l~~~ 137 (139)
T 3bja_A 127 LEDLLLKWKKH 137 (139)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777766554
No 315
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=48.84 E-value=15 Score=25.66 Aligned_cols=72 Identities=8% Similarity=0.033 Sum_probs=41.2
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc---C-CCC--Chh---HH-------------HhhHHHH--HHHH-hhhccCCcHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD---G-LHR--WPH---RK-------------IKSIQRR--MSVA-SGRLRSNDAE 135 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~---G-I~R--WPy---Rk-------------ikSl~~~--i~~L-~~~~~~~~~e 135 (160)
.+++.++|+.||++.+++-++.+++ | |.| =|. |+ +..+... +..+ ...+..-+++
T Consensus 55 ~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (154)
T 2qww_A 55 GISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRSTANAFMYKAMMKVFENLTEN 134 (154)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHHHHSCHHHHHHHHHHHTTSCHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHHHHHhhHHHHHHHHHHHhcCCHH
Confidence 4789999999999988877777653 4 333 111 11 1111111 1111 2233445777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041600 136 ERANAQIEIQRLQEEMA 152 (160)
Q Consensus 136 erar~~~eIerL~~Em~ 152 (160)
|.+....-++++.+-+.
T Consensus 135 e~~~l~~~l~~l~~~l~ 151 (154)
T 2qww_A 135 EIEELIRLNKKVETLLK 151 (154)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77777777777766543
No 316
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=48.50 E-value=3.7 Score=32.67 Aligned_cols=22 Identities=9% Similarity=0.304 Sum_probs=0.0
Q ss_pred CcHHHHHHHcCCChhHHHHHHH
Q 041600 82 LPIEEAARRMKLCPTVVKKICR 103 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~CR 103 (160)
.+++|+|+.+|||.+|+-|.-+
T Consensus 5 ~ti~diA~~agVS~~TVSr~Ln 26 (339)
T 3h5o_A 5 VTMHDVAKAAGVSAITVSRVLN 26 (339)
T ss_dssp ----------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHc
Confidence 4577788888888777776643
No 317
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=48.43 E-value=23 Score=22.46 Aligned_cols=43 Identities=7% Similarity=-0.042 Sum_probs=34.6
Q ss_pred hccCCCCHHHHHhhcCCcHHHHHHHc----CCChhHHHHHHHHcCCC
Q 041600 66 ERTGKLTLRDLMIYFHLPIEEAARRM----KLCPTVVKKICRRDGLH 108 (160)
Q Consensus 66 ~r~~~lt~~~L~~yF~lP~~eAA~~L----gv~~T~LKr~CR~~GI~ 108 (160)
.+...+|..+|....+++...+.+-. ..+..++.++|+-+|++
T Consensus 21 r~~~gltq~~lA~~~gvs~~~is~~e~g~~~~~~~~~~~ia~~l~v~ 67 (80)
T 3kz3_A 21 KNELGLSYESVADKMGMGQSAVAALFNGINALNAYNAALLAKILKVS 67 (80)
T ss_dssp HHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSC
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCC
Confidence 34567899999999999998888732 35678899999999985
No 318
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=48.23 E-value=30 Score=22.39 Aligned_cols=48 Identities=10% Similarity=0.146 Sum_probs=29.4
Q ss_pred CCHHHHHhhcCCcHHHHHHHc-------CCChhHHHHH---HHHcCC-CCChhHHHhhH
Q 041600 71 LTLRDLMIYFHLPIEEAARRM-------KLCPTVVKKI---CRRDGL-HRWPHRKIKSI 118 (160)
Q Consensus 71 lt~~~L~~yF~lP~~eAA~~L-------gv~~T~LKr~---CR~~GI-~RWPyRkikSl 118 (160)
+|+.||....+++...+.+.| +|+..+.+|+ .+++|. +.+..|.+++.
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~~a~~l~~~ 59 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLRLQ 59 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC---------
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccHHHHHHHHh
Confidence 478889999999998888765 5787777764 458886 44555555543
No 319
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=48.10 E-value=12 Score=25.93 Aligned_cols=40 Identities=13% Similarity=0.032 Sum_probs=28.1
Q ss_pred hccCCCCHHHHH---hhc-----CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 66 ERTGKLTLRDLM---IYF-----HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 66 ~r~~~lt~~~L~---~yF-----~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.+...||.+++. ..+ ++.+++.|+++|++.+++-++-.+|
T Consensus 13 ~k~~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~L 60 (91)
T 2dk5_A 13 GKMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNL 60 (91)
T ss_dssp CCCCCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 344566655543 222 6999999999999999988875443
No 320
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=48.08 E-value=12 Score=27.48 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=19.7
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRR 104 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~ 104 (160)
.+|+++.|..||+++.++-|+-++
T Consensus 178 ~~t~~~lA~~lg~sr~tvsR~l~~ 201 (227)
T 3dkw_A 178 PVAKQLVAGHLSIQPETFSRIMHR 201 (227)
T ss_dssp CSCTHHHHHHTTSCHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHH
Confidence 478899999999998888777543
No 321
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=48.03 E-value=20 Score=24.77 Aligned_cols=73 Identities=12% Similarity=0.168 Sum_probs=41.9
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc---C-CCCChh---HH-------------HhhHHHHHHHHhh-hccCCcHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD---G-LHRWPH---RK-------------IKSIQRRMSVASG-RLRSNDAEERAN 139 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~---G-I~RWPy---Rk-------------ikSl~~~i~~L~~-~~~~~~~eerar 139 (160)
.+++.+.|+.||++.+++-++..++ | |.|-|. |+ +..+...+..+.. .+..-++++.+.
T Consensus 45 ~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~ 124 (145)
T 3g3z_A 45 SRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPLTESAQEFSDKVFATFGDKRTTR 124 (145)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 5889999999999988888776654 4 333221 11 1222222222222 223346777777
Q ss_pred HHHHHHHHHHHHHH
Q 041600 140 AQIEIQRLQEEMAA 153 (160)
Q Consensus 140 ~~~eIerL~~Em~~ 153 (160)
...-++++.+-+.+
T Consensus 125 l~~~l~~l~~~l~~ 138 (145)
T 3g3z_A 125 LFADLDALAEVMEK 138 (145)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77766666655443
No 322
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=47.95 E-value=12 Score=27.23 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=19.8
Q ss_pred cCCcHHHHHHHcCCChhHHHHHHHH
Q 041600 80 FHLPIEEAARRMKLCPTVVKKICRR 104 (160)
Q Consensus 80 F~lP~~eAA~~Lgv~~T~LKr~CR~ 104 (160)
+.+++.+.|..||+++.++-|+-++
T Consensus 138 ~~~t~~~lA~~lg~sr~tvsR~l~~ 162 (195)
T 3b02_A 138 VTVSHEEIADATASIRESVSKVLAD 162 (195)
T ss_dssp EECCHHHHHHTTTSCHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHHHH
Confidence 3578999999999998887766543
No 323
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=47.71 E-value=17 Score=25.54 Aligned_cols=24 Identities=4% Similarity=-0.108 Sum_probs=18.8
Q ss_pred hhcCCcHHHHHHHcCCChhHHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
.|-..++.++|++.|||..+|-+.
T Consensus 31 G~~~~t~~~IA~~agvs~~t~Y~~ 54 (191)
T 4aci_A 31 GYEGATVRRLEEATGKSRGAIFHH 54 (191)
T ss_dssp HHHHCCHHHHHHHHTCCHHHHHHH
T ss_pred CcccCCHHHHHHHHCCCchHHHHH
Confidence 555688999999999998887544
No 324
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=47.43 E-value=7.5 Score=27.09 Aligned_cols=33 Identities=9% Similarity=0.032 Sum_probs=14.5
Q ss_pred CCChhHHHHHHHHcCCCCCh-hHHHhhHHHHHHH
Q 041600 92 KLCPTVVKKICRRDGLHRWP-HRKIKSIQRRMSV 124 (160)
Q Consensus 92 gv~~T~LKr~CR~~GI~RWP-yRkikSl~~~i~~ 124 (160)
|...++++.||++.||++=- |+..+|.+.++..
T Consensus 29 G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 62 (177)
T 3kkc_A 29 DYSKITVQDVIGLANVGRSTFYSHYESKEVLLKE 62 (177)
T ss_dssp CTTTCCHHHHHHHHCCCHHHHTTTCSSTHHHHHH
T ss_pred ChhHhhHHHHHHHhCCcHhhHHHHcCCHHHHHHH
Confidence 44444444444444444311 4444554444433
No 325
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=47.34 E-value=27 Score=29.14 Aligned_cols=30 Identities=20% Similarity=0.155 Sum_probs=24.4
Q ss_pred cCCcHHHHHHHcCCChhHHHHHHHHcCCCCCh
Q 041600 80 FHLPIEEAARRMKLCPTVVKKICRRDGLHRWP 111 (160)
Q Consensus 80 F~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWP 111 (160)
-+|.+.|.|+.+|||.+++.++ +.|-.+=|
T Consensus 24 ~gLtqeelA~~~gvS~~~is~i--E~G~~~~p 53 (292)
T 3pxp_A 24 RVWTQEVLAERTQLPKRTIERI--ENGSLAHL 53 (292)
T ss_dssp CBCCHHHHHHHHTCCHHHHHHH--HHTCCSCC
T ss_pred CCCCHHHHHHHHCcCHHHHHHH--HCCCCCCC
Confidence 6799999999999999999998 66754334
No 326
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=47.25 E-value=12 Score=26.77 Aligned_cols=22 Identities=14% Similarity=0.407 Sum_probs=13.3
Q ss_pred hcCCcHHHHHHHcCCChhHHHH
Q 041600 79 YFHLPIEEAARRMKLCPTVVKK 100 (160)
Q Consensus 79 yF~lP~~eAA~~Lgv~~T~LKr 100 (160)
|-.+++.++|++.|||..+|-+
T Consensus 49 ~~~~tv~~Ia~~agvs~~t~Y~ 70 (218)
T 3dcf_A 49 YYATSLDDIADRIGFTKPAIYY 70 (218)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHH
T ss_pred cccCcHHHHHHHhCCCHHHHHH
Confidence 3356666666666666666543
No 327
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=47.25 E-value=14 Score=27.43 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=25.5
Q ss_pred CCcHHHHHHHcCCChhHHHHHHH---HcCCCCChhHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICR---RDGLHRWPHRK 114 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR---~~GI~RWPyRk 114 (160)
.+++.+.|..||+++.++-|+-+ +.|+-..-+++
T Consensus 163 ~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~ 199 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTSTALNSLIKEGYISRQGRG 199 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECSTT
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEEcCCc
Confidence 58899999999999877666544 55766666666
No 328
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=47.24 E-value=55 Score=21.16 Aligned_cols=33 Identities=21% Similarity=0.183 Sum_probs=23.3
Q ss_pred CCCCHHHHHhhcC---Cc----HHHHHHHcCCChhHHHHH
Q 041600 69 GKLTLRDLMIYFH---LP----IEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 69 ~~lt~~~L~~yF~---lP----~~eAA~~Lgv~~T~LKr~ 101 (160)
..-.++.|..+|. .| ..+.|+.||++.+.++--
T Consensus 25 t~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~W 64 (80)
T 2da3_A 25 TPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVW 64 (80)
T ss_dssp CTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHH
Confidence 3445677777773 33 356799999999988754
No 329
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=47.19 E-value=17 Score=25.28 Aligned_cols=74 Identities=11% Similarity=0.045 Sum_probs=45.4
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc---C-CCCChh----------------HHHhhHHHHHHHHhh-hccCCcHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD---G-LHRWPH----------------RKIKSIQRRMSVASG-RLRSNDAEERAN 139 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~---G-I~RWPy----------------RkikSl~~~i~~L~~-~~~~~~~eerar 139 (160)
.+++.+.|+.||++.+++-+..+++ | |.|=|. ..+..+...+..+.. .+..-++++...
T Consensus 54 ~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~ 133 (152)
T 3bj6_A 54 GATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITAIRADEMAKLALFSEGFSSVELTA 133 (152)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5789999999999988887777654 3 333211 112222222333322 334557888888
Q ss_pred HHHHHHHHHHHHHHH
Q 041600 140 AQIEIQRLQEEMAAA 154 (160)
Q Consensus 140 ~~~eIerL~~Em~~~ 154 (160)
...-++++.+.+...
T Consensus 134 l~~~l~~l~~~l~~~ 148 (152)
T 3bj6_A 134 YHKVQLALTRFFADL 148 (152)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 888888887766554
No 330
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=47.16 E-value=7.7 Score=27.26 Aligned_cols=21 Identities=5% Similarity=0.075 Sum_probs=12.8
Q ss_pred hcCCcHHHHHHHcCCChhHHH
Q 041600 79 YFHLPIEEAARRMKLCPTVVK 99 (160)
Q Consensus 79 yF~lP~~eAA~~Lgv~~T~LK 99 (160)
|-..++.++|++.|||.+++-
T Consensus 26 ~~~~t~~~Ia~~agvs~~t~Y 46 (183)
T 1zk8_A 26 VQEVTLASLAQTLGVRSPSLY 46 (183)
T ss_dssp GGGCCHHHHHHHHTSCHHHHT
T ss_pred ccccCHHHHHHHcCCCchHHH
Confidence 334666666666666666653
No 331
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=47.10 E-value=17 Score=25.44 Aligned_cols=38 Identities=16% Similarity=0.140 Sum_probs=26.9
Q ss_pred cCCCCHHHHH------hhcCCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 68 TGKLTLRDLM------IYFHLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 68 ~~~lt~~~L~------~yF~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
...+|..++. ..=.+++.+.|+.|||+.+++-++.+++
T Consensus 42 ~~~l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~L 85 (153)
T 2pex_A 42 ALDLTYPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRL 85 (153)
T ss_dssp TTTCCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHH
Confidence 3456655543 2235789999999999988887776654
No 332
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=47.06 E-value=18 Score=25.62 Aligned_cols=22 Identities=9% Similarity=0.203 Sum_probs=14.9
Q ss_pred hcCCcHHHHHHHcCCChhHHHH
Q 041600 79 YFHLPIEEAARRMKLCPTVVKK 100 (160)
Q Consensus 79 yF~lP~~eAA~~Lgv~~T~LKr 100 (160)
|-..++.++|++.|||.++|-+
T Consensus 30 ~~~~t~~~Ia~~agvs~~t~Y~ 51 (202)
T 3lwj_A 30 YYNTSIRDIIALSEVGTGTFYN 51 (202)
T ss_dssp TTTCCHHHHHHHHCSCHHHHHH
T ss_pred cccCCHHHHHHHhCCCchhHHH
Confidence 3457777777777777777643
No 333
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=47.01 E-value=13 Score=27.46 Aligned_cols=36 Identities=11% Similarity=0.195 Sum_probs=26.1
Q ss_pred CCcHHHHHHHcCCChhHHHHHHH---HcCCCCChhHHHh
Q 041600 81 HLPIEEAARRMKLCPTVVKKICR---RDGLHRWPHRKIK 116 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR---~~GI~RWPyRkik 116 (160)
.+|+.+.|..||+++.+|-|+-+ +-|+-+.-+++|.
T Consensus 175 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~ 213 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRVLKRLEAHNILEVSPRSVT 213 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSCEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEecCCEEE
Confidence 57899999999999888777654 4465555555544
No 334
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=46.90 E-value=18 Score=25.37 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=16.5
Q ss_pred hhcCCcHHHHHHHcCCChhHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKK 100 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr 100 (160)
.|-..++.++|++.|||..+|-+
T Consensus 24 G~~~~t~~~IA~~agvs~~tlY~ 46 (186)
T 2jj7_A 24 GYEGTSIQEIAKEAKVNVAMASY 46 (186)
T ss_dssp HHHHCCHHHHHHHHTSCHHHHHH
T ss_pred CCccCCHHHHHHHhCCChhhhhh
Confidence 44467888888888888777643
No 335
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=46.89 E-value=14 Score=25.22 Aligned_cols=24 Identities=8% Similarity=0.178 Sum_probs=19.5
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRR 104 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~ 104 (160)
.++..|+|+.||++.+++-+.-+.
T Consensus 39 ~~~~~ela~~l~is~stvs~~L~~ 62 (106)
T 1r1u_A 39 EASVGHISHQLNLSQSNVSHQLKL 62 (106)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 478999999999998888766543
No 336
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=46.88 E-value=13 Score=27.19 Aligned_cols=24 Identities=21% Similarity=0.211 Sum_probs=20.5
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHc
Q 041600 82 LPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
++..+.|+.+||++.+|.++-.+|
T Consensus 31 ~~~~~iA~~~~i~~~~l~kil~~L 54 (149)
T 1ylf_A 31 CTSDYMAESVNTNPVVIRKIMSYL 54 (149)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHH
Confidence 789999999999999998887643
No 337
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=46.86 E-value=9.7 Score=26.78 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=12.2
Q ss_pred hcCCcHHHHHHHcCCChhHHH
Q 041600 79 YFHLPIEEAARRMKLCPTVVK 99 (160)
Q Consensus 79 yF~lP~~eAA~~Lgv~~T~LK 99 (160)
|-..++.++|++.|||..+|-
T Consensus 29 ~~~~tv~~Ia~~agvs~~t~Y 49 (196)
T 3he0_A 29 FQGLSMQKLANEAGVAAGTIY 49 (196)
T ss_dssp TTTCCHHHHHHHHTSCHHHHH
T ss_pred cccCCHHHHHHHhCCCcchHH
Confidence 344666666666666655553
No 338
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=46.81 E-value=29 Score=21.89 Aligned_cols=43 Identities=14% Similarity=0.004 Sum_probs=34.1
Q ss_pred hccCCCCHHHHHhhcCCcHHHHHHH----cCCChhHHHHHHHHcCCC
Q 041600 66 ERTGKLTLRDLMIYFHLPIEEAARR----MKLCPTVVKKICRRDGLH 108 (160)
Q Consensus 66 ~r~~~lt~~~L~~yF~lP~~eAA~~----Lgv~~T~LKr~CR~~GI~ 108 (160)
.....+|..+|....+++.....+- -.++..+|.++|+.+|++
T Consensus 20 R~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~v~ 66 (82)
T 3s8q_A 20 RLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVS 66 (82)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHTTCCCCBHHHHHHHHHHTTCC
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcC
Confidence 4456789999999999988888763 246788899999999984
No 339
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=46.81 E-value=16 Score=26.12 Aligned_cols=28 Identities=14% Similarity=0.036 Sum_probs=23.0
Q ss_pred HHHHhhcCCcHHHHHHHcCCChhHHHHH
Q 041600 74 RDLMIYFHLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 74 ~~L~~yF~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
.-|+..-.+.+..+|+.+||+.|++-|.
T Consensus 16 ~il~~la~~gq~~vA~~iGV~~StISR~ 43 (97)
T 1xwr_A 16 ALLNKIAMLGTEKTAEAVGVDKSQISRW 43 (97)
T ss_dssp HHHHHHHHHCHHHHHHHHTCCTTTHHHH
T ss_pred HHHHHHHHHhHHHHHHHhCCCHHHHHHH
Confidence 3456666789999999999999998764
No 340
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=46.73 E-value=16 Score=27.09 Aligned_cols=24 Identities=17% Similarity=0.063 Sum_probs=19.5
Q ss_pred cCCcHHHHHHHcCCChhHHHHHHH
Q 041600 80 FHLPIEEAARRMKLCPTVVKKICR 103 (160)
Q Consensus 80 F~lP~~eAA~~Lgv~~T~LKr~CR 103 (160)
+.+|+.+.|..||+++.+|-|+-+
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l~ 202 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLS 202 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred cccCHHHHHHHhCCCHHHHHHHHH
Confidence 357899999999999888776644
No 341
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=46.73 E-value=13 Score=28.45 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=17.9
Q ss_pred CCcHHHHHHHcCCChhHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
+-.+..||++||||.+++-+.
T Consensus 16 ~gs~t~AA~~L~isq~avS~~ 36 (305)
T 3fxq_A 16 VGSLRAAAQLLHLSQPALSAA 36 (305)
T ss_dssp HSCHHHHHHHTTCCHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHH
Confidence 467899999999999998755
No 342
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=46.71 E-value=29 Score=26.77 Aligned_cols=60 Identities=7% Similarity=0.194 Sum_probs=38.6
Q ss_pred HHHcCCChhHHHHHHHHcCCCCChhHHHhhH-HHHHHHHhhhccC-------------------------CcHHHHHHHH
Q 041600 88 ARRMKLCPTVVKKICRRDGLHRWPHRKIKSI-QRRMSVASGRLRS-------------------------NDAEERANAQ 141 (160)
Q Consensus 88 A~~Lgv~~T~LKr~CR~~GI~RWPyRkikSl-~~~i~~L~~~~~~-------------------------~~~eerar~~ 141 (160)
..--||+.++=+.+|+++||.. ..++..| +.+++.|...+.+ -..+-+....
T Consensus 31 t~I~GIG~~~A~~I~~~~gid~--~~r~g~Lt~~ei~~l~~~i~~~~~~~ip~w~lNr~kD~~~G~~~~li~~dL~~~~~ 108 (152)
T 3iz6_M 31 TSIKGVGRRFSNIVCKKADIDM--NKRAGELSAEEMDRLMAVVHNPRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLR 108 (152)
T ss_dssp TTSTTCCHHHHHHHHHHHTCCS--SSBTTTSCHHHHHHHHHHHHSCSSCCCCCCSCSCCCSCCCCSCCTTCTHHHHHHHH
T ss_pred hhccCcCHHHHHHHHHHcCCCC--CcEeCcCCHHHHHHHHHHHHhhcccCcchhhhhhhcccCCcceeeechhHHHHHHH
Confidence 3456999999999999999953 3344443 2244444444321 0145667888
Q ss_pred HHHHHHHH
Q 041600 142 IEIQRLQE 149 (160)
Q Consensus 142 ~eIerL~~ 149 (160)
+.|++|++
T Consensus 109 ~dI~RL~~ 116 (152)
T 3iz6_M 109 DDLERLKK 116 (152)
T ss_dssp HHHHHHHH
T ss_pred HhHHHHhh
Confidence 88888864
No 343
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=46.46 E-value=12 Score=26.74 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=18.5
Q ss_pred hhcCCcHHHHHHHcCCChhHHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
.| ..++.++|++.|||..+|-+.
T Consensus 33 G~-~~s~~~Ia~~agvs~~t~Y~~ 55 (199)
T 2rek_A 33 GA-DASLEEIARRAGVGSATLHRH 55 (199)
T ss_dssp GG-GCCHHHHHHHHTCCHHHHHHH
T ss_pred CC-CCCHHHHHHHhCCchHHHHHH
Confidence 56 888999999999988887544
No 344
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=46.35 E-value=13 Score=27.17 Aligned_cols=36 Identities=25% Similarity=0.245 Sum_probs=24.5
Q ss_pred cCCcHHHHHHHcCCChhHHHHHHH---HcCCCCChhHHH
Q 041600 80 FHLPIEEAARRMKLCPTVVKKICR---RDGLHRWPHRKI 115 (160)
Q Consensus 80 F~lP~~eAA~~Lgv~~T~LKr~CR---~~GI~RWPyRki 115 (160)
+.+++.+.|..||+++.++-|+-+ +.|+-..-+++|
T Consensus 145 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i 183 (202)
T 2zcw_A 145 LKATHDELAAAVGSVRETVTKVIGELAREGYIRSGYGKI 183 (202)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEE
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCCCEE
Confidence 358899999999999887776654 345544333443
No 345
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=46.22 E-value=13 Score=25.93 Aligned_cols=19 Identities=11% Similarity=0.032 Sum_probs=9.8
Q ss_pred CCcHHHHHHHcCCChhHHH
Q 041600 81 HLPIEEAARRMKLCPTVVK 99 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LK 99 (160)
.+++.++|++.|||.+++-
T Consensus 29 ~~tv~~Ia~~agvs~~t~Y 47 (195)
T 3ppb_A 29 GTSTATIAREAGVATGTLF 47 (195)
T ss_dssp TSCHHHHHHHHTCCHHHHH
T ss_pred cCCHHHHHHHhCCChhHHH
Confidence 4555555555555555543
No 346
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=46.08 E-value=18 Score=30.09 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=27.2
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
++.|+..=.++..|.|+.+|+|.+|+.++.+++
T Consensus 22 l~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L 54 (406)
T 1z6r_A 22 YRLIDQLGPVSRIDLSRLAQLAPASITKIVHEM 54 (406)
T ss_dssp HHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 555566667999999999999999999997654
No 347
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=45.91 E-value=19 Score=29.03 Aligned_cols=25 Identities=12% Similarity=-0.005 Sum_probs=22.2
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.+++.|.|+.||++.+++-|+.++|
T Consensus 166 ~~s~~eLA~~lglsksTv~r~L~~L 190 (244)
T 2wte_A 166 GTGITELAKMLDKSEKTLINKIAEL 190 (244)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 6899999999999999998887655
No 348
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=45.86 E-value=38 Score=29.53 Aligned_cols=42 Identities=21% Similarity=0.198 Sum_probs=32.5
Q ss_pred hHHHhhHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHHHh
Q 041600 112 HRKIKSIQRRMSVASGRLRSNDAEERANAQIEIQRLQEEMAAAC 155 (160)
Q Consensus 112 yRkikSl~~~i~~L~~~~~~~~~eerar~~~eIerL~~Em~~~c 155 (160)
|+.+++....+..+.+++. |++.+.-+.++|+.|+.++..+.
T Consensus 48 ~~~~~~~~~~~~~~~el~~--D~e~~~~a~~e~~~l~~~~~~le 89 (354)
T 3d5a_X 48 IREYRKVLEDLEQAESLLD--DPELKEMAKAEREALLARKEALE 89 (354)
T ss_dssp HHHHHHHHHHHHHHHTSTT--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777888887775 78878788888888888777653
No 349
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=45.82 E-value=12 Score=28.48 Aligned_cols=31 Identities=19% Similarity=0.346 Sum_probs=22.9
Q ss_pred CCHHHHHhhc----CCcHHHHHHHcCCChhHHHHH
Q 041600 71 LTLRDLMIYF----HLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 71 lt~~~L~~yF----~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
++++.|+-+. +-.+..||++||||.++|-+.
T Consensus 10 m~l~~L~~f~~v~~~gs~s~AA~~L~isq~avS~~ 44 (310)
T 2esn_A 10 LDLNLLLVFDALYRHRNVGTAASELAISASAFSHA 44 (310)
T ss_dssp SCTTHHHHHHHHHHHSSHHHHHHHHTCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHhCCChHHHHHH
Confidence 5566654222 578899999999999988655
No 350
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=45.80 E-value=21 Score=29.63 Aligned_cols=36 Identities=22% Similarity=0.138 Sum_probs=30.4
Q ss_pred CCCCHHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 69 GKLTLRDLMIYFHLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 69 ~~lt~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
...-++.|+ .=.++..|.|+.+|+|.+|+.++.++|
T Consensus 22 ~~~il~~l~-~~~~sr~~la~~~gls~~tv~~~v~~L 57 (380)
T 2hoe_A 22 ISRILKRIM-KSPVSRVELAEELGLTKTTVGEIAKIF 57 (380)
T ss_dssp CCCSHHHHH-HSCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 334578888 777999999999999999999998765
No 351
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=45.79 E-value=21 Score=22.64 Aligned_cols=43 Identities=14% Similarity=0.004 Sum_probs=33.9
Q ss_pred hccCCCCHHHHHhhcCCcHHHHHHHc----CCChhHHHHHHHHcCCC
Q 041600 66 ERTGKLTLRDLMIYFHLPIEEAARRM----KLCPTVVKKICRRDGLH 108 (160)
Q Consensus 66 ~r~~~lt~~~L~~yF~lP~~eAA~~L----gv~~T~LKr~CR~~GI~ 108 (160)
.....+|..+|....+++...+.+-. .++..+|.++|+.+|++
T Consensus 21 r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~~ 67 (88)
T 2wiu_B 21 RQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELS 67 (88)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHHCGGGCBHHHHHHHHHHTTCE
T ss_pred HHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCC
Confidence 34567899999999999888887733 36778899999999883
No 352
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=45.52 E-value=30 Score=30.59 Aligned_cols=22 Identities=14% Similarity=0.212 Sum_probs=20.3
Q ss_pred CCcHHHHHHHcCCChhHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKIC 102 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~C 102 (160)
.++++|+|+.||||..+++.+-
T Consensus 395 ~~TleEIAe~LgIS~erVRqi~ 416 (438)
T 1l9z_H 395 EHTLEEVGAYFGVTRERIRQIE 416 (438)
T ss_pred CCCHHHHHHHHCcCHHHHHHHH
Confidence 5899999999999999999885
No 353
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=45.44 E-value=18 Score=30.51 Aligned_cols=33 Identities=15% Similarity=0.148 Sum_probs=28.1
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
+..|+..=.++..|.|+.+|+|.+|+.++.+++
T Consensus 45 l~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L 77 (429)
T 1z05_A 45 YKLIDQKGPISRIDLSKESELAPASITKITREL 77 (429)
T ss_dssp HHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 566666667999999999999999999998765
No 354
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=45.34 E-value=30 Score=23.87 Aligned_cols=37 Identities=19% Similarity=0.120 Sum_probs=23.4
Q ss_pred CCCCHHHHH------hhcCCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 69 GKLTLRDLM------IYFHLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 69 ~~lt~~~L~------~yF~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
..+|..++. ..=.+++.+.|+.||++.+++-++..++
T Consensus 33 ~~lt~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L 75 (142)
T 3ech_A 33 LDLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIREL 75 (142)
T ss_dssp CCCCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHH
Confidence 445555543 3236899999999999988887776654
No 355
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=45.26 E-value=22 Score=28.98 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=23.5
Q ss_pred CCcHHHHHHHcCCChhHHHHH---HHHcCCC
Q 041600 81 HLPIEEAARRMKLCPTVVKKI---CRRDGLH 108 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~---CR~~GI~ 108 (160)
.+.+.|.|+.||||..|+.|. .++.|+-
T Consensus 21 ~~~~~ela~~l~vS~~tIrRdL~~l~~~G~v 51 (315)
T 2w48_A 21 DMTQAQIARELGIYRTTISRLLKRGREQGIV 51 (315)
T ss_dssp CCCHHHHHHHTTCCHHHHHHHHHHHHHTTSE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCcE
Confidence 599999999999999998876 4567764
No 356
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=45.20 E-value=18 Score=25.30 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=20.6
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.+++.++|+.||++.+++-++.+++
T Consensus 57 ~~t~~ela~~l~i~~~tvs~~l~~L 81 (155)
T 3cdh_A 57 AMMITRLAKLSLMEQSRMTRIVDQM 81 (155)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4689999999999988887776654
No 357
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=45.17 E-value=19 Score=27.00 Aligned_cols=19 Identities=11% Similarity=0.272 Sum_probs=13.1
Q ss_pred CCcHHHHHHHcCCChhHHH
Q 041600 81 HLPIEEAARRMKLCPTVVK 99 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LK 99 (160)
.+++.++|+++|||..+|-
T Consensus 29 ~~s~~~IA~~aGvs~~tlY 47 (213)
T 2g7g_A 29 DFRMPDLARHLNVQVSSIY 47 (213)
T ss_dssp SCCHHHHHHHTTSCHHHHH
T ss_pred CCCHHHHHHHhCCCHhHHH
Confidence 5777777777777766653
No 358
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=45.00 E-value=20 Score=25.39 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=16.0
Q ss_pred hhcCCcHHHHHHHcCCChhHHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
.|-..++.++|++.|||..+|-+.
T Consensus 33 G~~~~t~~~Ia~~agvs~~t~Y~~ 56 (213)
T 2qtq_A 33 DVVDISLSELSLRSGLNSALVKYY 56 (213)
T ss_dssp TSSCCCHHHHHHHHCCCHHHHHHH
T ss_pred CcccccHHHHHHHhCCChhhHhHh
Confidence 344677777777777777766443
No 359
>2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor}
Probab=44.98 E-value=17 Score=29.16 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=21.8
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHcCC
Q 041600 82 LPIEEAARRMKLCPTVVKKICRRDGL 107 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~CR~~GI 107 (160)
|+|.|+|+.+|||+.||+-..++ |+
T Consensus 1 ~~IgevA~~~Gvs~~TLRyYE~~-GL 25 (222)
T 2dg6_A 1 MRLADLSKRSGVSTATIKYYLRE-GL 25 (222)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHH-TS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHC-CC
Confidence 57999999999999999988766 64
No 360
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=44.97 E-value=14 Score=27.26 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=19.9
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRR 104 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~ 104 (160)
.+|.++.|..||+++.+|-|+-++
T Consensus 187 ~lt~~~lA~~lg~sr~tvsR~l~~ 210 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAGRVLKK 210 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHH
Confidence 478999999999998888777543
No 361
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=44.81 E-value=19 Score=27.81 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=36.0
Q ss_pred ChhHHHhhHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHHHhccc
Q 041600 110 WPHRKIKSIQRRMSVASGRLRSNDAEERANAQIEIQRLQEEMAAACAGL 158 (160)
Q Consensus 110 WPyRkikSl~~~i~~L~~~~~~~~~eerar~~~eIerL~~Em~~~c~~~ 158 (160)
|=.|+|..+++.+..++..++..=..-++++..++..|+..+..+-++|
T Consensus 20 ~alr~ia~l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l 68 (171)
T 2p2u_A 20 GALAEIATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGV 68 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999888764333445667777777777777766554
No 362
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=44.75 E-value=15 Score=27.74 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=27.3
Q ss_pred cCCcHHHHHHHcCCChhHHHHHHH---HcCCCCChhHHHh
Q 041600 80 FHLPIEEAARRMKLCPTVVKKICR---RDGLHRWPHRKIK 116 (160)
Q Consensus 80 F~lP~~eAA~~Lgv~~T~LKr~CR---~~GI~RWPyRkik 116 (160)
+.+|+.+.|..||+++.++-|+-+ +-|+-+.-.+++.
T Consensus 176 ~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~i~ 215 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRVLASLKRENILDKKKNKII 215 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSEEE
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeCCCEEE
Confidence 467999999999999888777665 4476555556544
No 363
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=44.68 E-value=4.6 Score=32.01 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=0.0
Q ss_pred CcHHHHHHHcCCChhHHHHHH
Q 041600 82 LPIEEAARRMKLCPTVVKKIC 102 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~C 102 (160)
.+++|+|+..|||.+|+-|.-
T Consensus 4 ~ti~diA~~agVS~~TVSrvl 24 (338)
T 3dbi_A 4 TTMLEVAKRAGVSKATVSRVL 24 (338)
T ss_dssp ---------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHH
Confidence 467888999999988887664
No 364
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=44.54 E-value=14 Score=28.60 Aligned_cols=24 Identities=8% Similarity=0.213 Sum_probs=20.5
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRR 104 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~ 104 (160)
.++..+.|+.||+|.+++.+..++
T Consensus 33 ~~s~~eLA~~lglS~stv~~~l~~ 56 (192)
T 1uly_A 33 EMTISQLSEILGKTPQTIYHHIEK 56 (192)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 488999999999999988877664
No 365
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=44.29 E-value=20 Score=26.78 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=21.8
Q ss_pred CCcHHHHHHHcCCChhHH----HHHHHHcCC
Q 041600 81 HLPIEEAARRMKLCPTVV----KKICRRDGL 107 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~L----Kr~CR~~GI 107 (160)
+++.+++|+.|++|..|+ +++.+++|+
T Consensus 164 g~s~~eIa~~l~is~~TV~~hi~~l~~KL~~ 194 (225)
T 3c3w_A 164 GLTNKQIADRMFLAEKTVKNYVSRLLAKLGM 194 (225)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 589999999999998855 556667776
No 366
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=44.24 E-value=16 Score=27.71 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=20.1
Q ss_pred cCCcHHHHHHHcCCChhHHHHHHHH
Q 041600 80 FHLPIEEAARRMKLCPTVVKKICRR 104 (160)
Q Consensus 80 F~lP~~eAA~~Lgv~~T~LKr~CR~ 104 (160)
+.+++.+.|..||+++.+|-|+.++
T Consensus 192 ~~lt~~~lA~~lG~sr~tvsR~l~~ 216 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVTRLLGD 216 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHCCcHHHHHHHHHH
Confidence 3578899999999998888776543
No 367
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=44.22 E-value=24 Score=25.39 Aligned_cols=23 Identities=17% Similarity=-0.044 Sum_probs=15.9
Q ss_pred hhcCCcHHHHHHHcCCChhHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKK 100 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr 100 (160)
.|-..++.++|++.|||..+|-+
T Consensus 32 G~~~~s~~~IA~~agvs~~t~Y~ 54 (221)
T 3c2b_A 32 GEKALTTSGLARAANCSKESLYK 54 (221)
T ss_dssp CGGGCCHHHHHHHHTCCHHHHHH
T ss_pred CcccCCHHHHHHHhCCCHHHHHH
Confidence 44567777777777777777643
No 368
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=43.93 E-value=8.7 Score=26.87 Aligned_cols=34 Identities=26% Similarity=0.230 Sum_probs=31.5
Q ss_pred chHHHHHHHHHHHHHHhhCCceeecCchhHHHHH
Q 041600 5 SIENVKEYLVQYCEERKQAGFMMLPDPLSDFYEA 38 (160)
Q Consensus 5 s~~~vk~~L~~y~~~r~~~g~~~~qd~~s~f~~a 38 (160)
|.||.++.|..|-....|.=.|..-||++.+|.+
T Consensus 16 s~eEk~~lL~~y~i~~~qLPrI~~~DPvar~~G~ 49 (78)
T 1hmj_A 16 PKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGA 49 (78)
T ss_pred CHHHHHHHHHHcCCCHHHCCeeeCcCHhhHHhCC
Confidence 6799999999999999999999999999988765
No 369
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=43.88 E-value=31 Score=22.46 Aligned_cols=42 Identities=19% Similarity=-0.005 Sum_probs=35.5
Q ss_pred hccCCCCHHHHHhhcCCcHHHHHHH----cCCChhHHHHHHHHcCC
Q 041600 66 ERTGKLTLRDLMIYFHLPIEEAARR----MKLCPTVVKKICRRDGL 107 (160)
Q Consensus 66 ~r~~~lt~~~L~~yF~lP~~eAA~~----Lgv~~T~LKr~CR~~GI 107 (160)
.....+|..+|....+++...+++- -.++..+|.++|+-+|+
T Consensus 23 R~~~gltq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v 68 (86)
T 3eus_A 23 RLDAGLTQADLAERLDKPQSFVAKVETRERRLDVIEFAKWMAACEG 68 (86)
T ss_dssp HHHTTCCHHHHHHHTTCCHHHHHHHHTTSSCCBHHHHHHHHHHTTC
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCC
Confidence 4557799999999999999888872 35678899999999998
No 370
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=43.60 E-value=36 Score=23.58 Aligned_cols=43 Identities=9% Similarity=0.163 Sum_probs=37.2
Q ss_pred hccCCCCHHHHHhhcCCcHHHHHHHc----CCChhHHHHHHHHcCCC
Q 041600 66 ERTGKLTLRDLMIYFHLPIEEAARRM----KLCPTVVKKICRRDGLH 108 (160)
Q Consensus 66 ~r~~~lt~~~L~~yF~lP~~eAA~~L----gv~~T~LKr~CR~~GI~ 108 (160)
.....+|..+|....+++...+.+-+ .++..++.++|+-+|++
T Consensus 23 r~~~gltq~eLA~~lGis~~~is~ie~G~~~~s~~~~~kla~~lgvs 69 (104)
T 3trb_A 23 GFLDKMSANQLAKHLAIPTNRVTAILNGARSITADTALRLAKFFGTT 69 (104)
T ss_dssp HHTTSCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCC
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcC
Confidence 45678999999999999999998743 47889999999999994
No 371
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=43.46 E-value=12 Score=26.30 Aligned_cols=22 Identities=9% Similarity=0.147 Sum_probs=16.6
Q ss_pred hhcCCcHHHHHHHcCCChhHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVK 99 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LK 99 (160)
.|-.+++.++|++.|||.+++-
T Consensus 20 G~~~~ti~~IA~~agvs~~t~Y 41 (189)
T 3geu_A 20 GYDGTTLDDIAKSVNIKKASLY 41 (189)
T ss_dssp HHHHCCHHHHHHHTTCCHHHHT
T ss_pred CcccCCHHHHHHHhCCCHHHHH
Confidence 4556888888888888877764
No 372
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=43.45 E-value=42 Score=22.57 Aligned_cols=43 Identities=12% Similarity=0.145 Sum_probs=36.7
Q ss_pred hccCCCCHHHHHhhcCCcHHHHHHHc----CCChhHHHHHHHHcCCC
Q 041600 66 ERTGKLTLRDLMIYFHLPIEEAARRM----KLCPTVVKKICRRDGLH 108 (160)
Q Consensus 66 ~r~~~lt~~~L~~yF~lP~~eAA~~L----gv~~T~LKr~CR~~GI~ 108 (160)
.....+|..+|....+++...+++-. .++..++.++|+-+|++
T Consensus 20 r~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~la~~l~~~ 66 (113)
T 2eby_A 20 LEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLAKVFDTT 66 (113)
T ss_dssp TTTTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCC
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcC
Confidence 45678999999999999999998743 36788999999999985
No 373
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=43.44 E-value=21 Score=25.30 Aligned_cols=24 Identities=8% Similarity=0.098 Sum_probs=18.0
Q ss_pred hhcCCcHHHHHHHcCCChhHHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
.|-.+++.++|++.|||..+|-+.
T Consensus 25 G~~~~t~~~IA~~agvs~~t~Y~~ 48 (195)
T 3frq_A 25 GPIEFTLSGVAKEVGLSRAALIQR 48 (195)
T ss_dssp HHHHCCHHHHHHHHTCCHHHHHHH
T ss_pred CcccCCHHHHHHHhCCCHHHHHHH
Confidence 455788888888888888877443
No 374
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=43.40 E-value=21 Score=25.09 Aligned_cols=25 Identities=12% Similarity=0.002 Sum_probs=20.6
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.++..++|+.||++.+++-+.-+.+
T Consensus 56 ~~s~~eLa~~l~is~stvs~~L~~L 80 (122)
T 1u2w_A 56 ELCVCDIANILGVTIANASHHLRTL 80 (122)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4788999999999999888776553
No 375
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=43.36 E-value=20 Score=28.77 Aligned_cols=27 Identities=19% Similarity=0.064 Sum_probs=22.5
Q ss_pred HHhhcCCcHHHHHHHcCCChhHHHHHH
Q 041600 76 LMIYFHLPIEEAARRMKLCPTVVKKIC 102 (160)
Q Consensus 76 L~~yF~lP~~eAA~~Lgv~~T~LKr~C 102 (160)
|..+-+++.+|+|..||++..++|..-
T Consensus 122 L~~~eg~s~~EIA~~lgis~~tVks~l 148 (286)
T 3n0r_A 122 LTALEGFTPTEAAQILDCDFGEVERLI 148 (286)
T ss_dssp HHHTTCCCHHHHHHHHTCCHHHHHHHH
T ss_pred EEeeCCCCHHHHHHHhCcCHHHHHHHH
Confidence 345557999999999999999998763
No 376
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.36 E-value=15 Score=24.35 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=21.7
Q ss_pred HHHHHhhcCCc-----------HHHHHHHcCCChhHHHHH
Q 041600 73 LRDLMIYFHLP-----------IEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 73 ~~~L~~yF~lP-----------~~eAA~~Lgv~~T~LKr~ 101 (160)
+..|..+|... ..+.|+.||++.+.++--
T Consensus 20 ~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vW 59 (80)
T 2da4_A 20 LATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTW 59 (80)
T ss_dssp HHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHh
Confidence 45566778655 457799999999998854
No 377
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=43.14 E-value=17 Score=26.76 Aligned_cols=34 Identities=24% Similarity=0.222 Sum_probs=23.2
Q ss_pred CCcHHHHHHHcCCChhHHHHHHH---HcCCCCChhHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICR---RDGLHRWPHRK 114 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR---~~GI~RWPyRk 114 (160)
.+++.+.|..||+++.++-|+-+ +-|+-..-+++
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~ 213 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKS 213 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEecCCE
Confidence 47899999999999887776643 34543333333
No 378
>3v47_C Flagellin; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Salmonella enterica subsp}
Probab=43.00 E-value=41 Score=29.96 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=21.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHh
Q 041600 132 NDAEERANAQIEIQRLQEEMAAAC 155 (160)
Q Consensus 132 ~~~eerar~~~eIerL~~Em~~~c 155 (160)
..+++|..++.||+.|.+||..+-
T Consensus 63 ~s~~DR~aIq~Ei~qL~~eI~~Ia 86 (425)
T 3v47_C 63 NSDSDLKSIQDEIQQRLEEIDRVS 86 (425)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999998764
No 379
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=42.92 E-value=33 Score=23.31 Aligned_cols=43 Identities=14% Similarity=0.004 Sum_probs=34.4
Q ss_pred hccCCCCHHHHHhhcCCcHHHHHHH----cCCChhHHHHHHHHcCCC
Q 041600 66 ERTGKLTLRDLMIYFHLPIEEAARR----MKLCPTVVKKICRRDGLH 108 (160)
Q Consensus 66 ~r~~~lt~~~L~~yF~lP~~eAA~~----Lgv~~T~LKr~CR~~GI~ 108 (160)
.....+|.++|....+++.....+- -.++..+|.++|+.+|++
T Consensus 37 R~~~gltq~elA~~~gis~~~is~iE~G~~~ps~~~l~~ia~~l~v~ 83 (99)
T 3g5g_A 37 RLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVS 83 (99)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCC
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcC
Confidence 5557889999999999988888762 346788899999999983
No 380
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=42.88 E-value=98 Score=24.66 Aligned_cols=34 Identities=15% Similarity=0.148 Sum_probs=27.7
Q ss_pred HHhhcCCcHHHHHHHcCCChhHHHHHHHHcCCCC
Q 041600 76 LMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHR 109 (160)
Q Consensus 76 L~~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~R 109 (160)
|..+|...+++.|+.+|||.+.+-|.-.-..++.
T Consensus 37 L~~g~~~~Q~~lA~~~giS~a~VSR~L~~A~LP~ 70 (189)
T 3mky_B 37 LQNEFAGNISALADAENISRKIITRCINTAKLPK 70 (189)
T ss_dssp HHTTTTTCHHHHHHHHTSCHHHHHHHHHHHHSCH
T ss_pred HhcCcccCHHHHHHHHCCCHHHHHHHHHHhcCCH
Confidence 4577889999999999999999988766555544
No 381
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=42.68 E-value=5.2 Score=31.71 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=0.0
Q ss_pred CcHHHHHHHcCCChhHHHHHHH
Q 041600 82 LPIEEAARRMKLCPTVVKKICR 103 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~CR 103 (160)
.+++|+|+..|||.+|+-|.-.
T Consensus 6 ~ti~diA~~agVS~~TVSrvln 27 (332)
T 2o20_A 6 TTIYDVARVAGVSMATVSRVVN 27 (332)
T ss_dssp ----------------------
T ss_pred CcHHHHHHHHCCCHHHHHHHHc
Confidence 3566666666666666655543
No 382
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=42.58 E-value=5.2 Score=31.67 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=0.0
Q ss_pred cHHHHHHHcCCChhHHHHHHHH
Q 041600 83 PIEEAARRMKLCPTVVKKICRR 104 (160)
Q Consensus 83 P~~eAA~~Lgv~~T~LKr~CR~ 104 (160)
+++|+|+..|||.+|+-|.-..
T Consensus 4 ti~diA~~agVS~~TVSrvln~ 25 (330)
T 3ctp_A 4 NIREIAKRAGISIATVSRHLNN 25 (330)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHcC
Confidence 5778888888888777776543
No 383
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=42.57 E-value=23 Score=27.39 Aligned_cols=45 Identities=9% Similarity=0.073 Sum_probs=26.8
Q ss_pred cCCCCHHHHH----------hhcCCcHHHHHHHcCCChhHHHHHHHHcCCCCChhHHHhhHHHHHHHH
Q 041600 68 TGKLTLRDLM----------IYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKIKSIQRRMSVA 125 (160)
Q Consensus 68 ~~~lt~~~L~----------~yF~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWPyRkikSl~~~i~~L 125 (160)
...+|.+.|- .|-.+.+.++|+++|||..+| |+-+++.+.++..+
T Consensus 16 r~~~tr~~Il~AA~~l~~e~G~~~~S~~~IA~~aGvs~~tl-------------Y~hF~sK~~Ll~av 70 (243)
T 2g7l_A 16 KPALSRRWIVDTAVALMRAEGLEKVTMRRLAQELDTGPASL-------------YVYVANTAELHAAV 70 (243)
T ss_dssp CCCCCHHHHHHHHHHHHHHHCSSSCCHHHHHHHTTSCHHHH-------------TTTCCSHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHhcCchhcCHHHHHHHHCCChhHH-------------HHHcCCHHHHHHHH
Confidence 3456666653 344577777777777776665 45555555555444
No 384
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=42.57 E-value=17 Score=24.97 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=20.0
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.+++.+.|+.||++.+++-+..+++
T Consensus 51 ~~~~~ela~~l~~~~~tvs~~l~~L 75 (142)
T 2bv6_A 51 PVNVKKVVTELALDTGTVSPLLKRM 75 (142)
T ss_dssp EEEHHHHHHHTTCCTTTHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhhHHHHHHHH
Confidence 4689999999999988777766644
No 385
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=42.55 E-value=23 Score=25.32 Aligned_cols=33 Identities=3% Similarity=0.082 Sum_probs=17.6
Q ss_pred cCCcHHHHHHHcCCChhHHHHHHHHcCCCCChhHHHhhHHHHHHHH
Q 041600 80 FHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKIKSIQRRMSVA 125 (160)
Q Consensus 80 F~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWPyRkikSl~~~i~~L 125 (160)
-..++.++|++.|||..+| |+..+|.+.++..+
T Consensus 31 ~~~s~~~IA~~aGvs~~tl-------------Y~~F~sKe~L~~av 63 (197)
T 2hyt_A 31 ADTSMDDLTAQASLTRGAL-------------YHHFGDKKGLLAAV 63 (197)
T ss_dssp TTCCHHHHHHHHTCCTTHH-------------HHHHSSHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHH-------------HHHcCCHHHHHHHH
Confidence 3455555555555555554 55555555554443
No 386
>1io1_A Phase 1 flagellin; beta-folium, structural protein; 2.00A {Salmonella typhimurium} SCOP: e.32.1.1
Probab=42.47 E-value=43 Score=28.96 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=22.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhc
Q 041600 132 NDAEERANAQIEIQRLQEEMAAACA 156 (160)
Q Consensus 132 ~~~eerar~~~eIerL~~Em~~~c~ 156 (160)
.++++|+.++.||+.|.+||..+-+
T Consensus 51 ~s~~dr~ai~~Ei~~l~~ei~~ia~ 75 (398)
T 1io1_A 51 NSQSDLDSIQAEITQRLNEIDRVSG 75 (398)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999987643
No 387
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=42.41 E-value=5.3 Score=31.94 Aligned_cols=21 Identities=10% Similarity=0.045 Sum_probs=0.0
Q ss_pred CcHHHHHHHcCCChhHHHHHH
Q 041600 82 LPIEEAARRMKLCPTVVKKIC 102 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~C 102 (160)
.+++|+|+..|||.+|+-|.-
T Consensus 7 ~ti~diA~~agVS~~TVSr~L 27 (333)
T 3jvd_A 7 SSLKEVAELAGVGYATASRAL 27 (333)
T ss_dssp ---------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHH
Confidence 356677777777776666553
No 388
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=42.36 E-value=5.3 Score=32.07 Aligned_cols=20 Identities=10% Similarity=0.270 Sum_probs=0.0
Q ss_pred CcHHHHHHHcCCChhHHHHH
Q 041600 82 LPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~ 101 (160)
.+++|+|+..|||.+|+-|.
T Consensus 13 ~ti~diA~~agVS~~TVSr~ 32 (355)
T 3e3m_A 13 VTMRDVAKAAGVSRMTVSRA 32 (355)
T ss_dssp --------------------
T ss_pred CcHHHHHHHhCCCHHHHHHH
Confidence 34566666666666665544
No 389
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=42.04 E-value=21 Score=24.56 Aligned_cols=82 Identities=12% Similarity=0.114 Sum_probs=46.0
Q ss_pred CCCCHHHHH------hhcCCcHHHHHHHcCCChhHHHHHHHHc---C-CCCChh---H-------------HHhhHHHHH
Q 041600 69 GKLTLRDLM------IYFHLPIEEAARRMKLCPTVVKKICRRD---G-LHRWPH---R-------------KIKSIQRRM 122 (160)
Q Consensus 69 ~~lt~~~L~------~yF~lP~~eAA~~Lgv~~T~LKr~CR~~---G-I~RWPy---R-------------kikSl~~~i 122 (160)
..+|..++. ..=.+++.+.|+.||++.+++-+..+++ | |.|=|. | -+..+...+
T Consensus 36 ~~l~~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~~~~~~~ 115 (147)
T 1z91_A 36 LNITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEKAVDIP 115 (147)
T ss_dssp TCCCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGGTTTHH
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHHHHHHH
Confidence 446655543 2225689999999999988777666543 3 333321 0 122222333
Q ss_pred HHHhhhccCCcHHHHHHHHHHHHHHHHHH
Q 041600 123 SVASGRLRSNDAEERANAQIEIQRLQEEM 151 (160)
Q Consensus 123 ~~L~~~~~~~~~eerar~~~eIerL~~Em 151 (160)
..+...+ .-++++......-++++.+-+
T Consensus 116 ~~~~~~~-~l~~~e~~~l~~~l~~l~~~l 143 (147)
T 1z91_A 116 GTILGLS-KQSGEDLKQLKSALYTLLETL 143 (147)
T ss_dssp HHHHHHT-CCCTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHHHHHHH
Confidence 3444444 446677766666666665544
No 390
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=41.93 E-value=17 Score=25.97 Aligned_cols=21 Identities=10% Similarity=0.009 Sum_probs=12.2
Q ss_pred hcCCcHHHHHHHcCCChhHHH
Q 041600 79 YFHLPIEEAARRMKLCPTVVK 99 (160)
Q Consensus 79 yF~lP~~eAA~~Lgv~~T~LK 99 (160)
|-.+++.++|++.|||..+|-
T Consensus 27 ~~~~ti~~IA~~agvs~~t~Y 47 (193)
T 2dg8_A 27 IARVSHRRIAQRAGVPLGSMT 47 (193)
T ss_dssp GGGCCHHHHHHHHTSCTHHHH
T ss_pred hhhccHHHHHHHhCCCchhhh
Confidence 335666666666666655553
No 391
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=41.88 E-value=23 Score=25.50 Aligned_cols=84 Identities=11% Similarity=0.167 Sum_probs=49.3
Q ss_pred CCCCHHHHH------hhcCCcHHHHHHHcCCChhHHHHHHHHc---C-CCCCh----------------hHHHhhHHHHH
Q 041600 69 GKLTLRDLM------IYFHLPIEEAARRMKLCPTVVKKICRRD---G-LHRWP----------------HRKIKSIQRRM 122 (160)
Q Consensus 69 ~~lt~~~L~------~yF~lP~~eAA~~Lgv~~T~LKr~CR~~---G-I~RWP----------------yRkikSl~~~i 122 (160)
..||..++. ..=.+++.+.|+.||++.+++-++..++ | |.|=| ...+..+...+
T Consensus 41 ~~lt~~~~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~~~~~ 120 (168)
T 2nyx_A 41 ENITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQVTEHR 120 (168)
T ss_dssp SSCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHHHHH
Confidence 356665554 2225789999999999998888777654 3 22211 11222222322
Q ss_pred HHH-hhhccCCcHHHHHHHHHHHHHHHHHHH
Q 041600 123 SVA-SGRLRSNDAEERANAQIEIQRLQEEMA 152 (160)
Q Consensus 123 ~~L-~~~~~~~~~eerar~~~eIerL~~Em~ 152 (160)
..+ ...+..-++++.+....-++++.+-+.
T Consensus 121 ~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~ 151 (168)
T 2nyx_A 121 RTEIARIVEQMAPAERHGLVRALTAFTEAGG 151 (168)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 222 233445577888777777777766544
No 392
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=41.68 E-value=5.5 Score=32.05 Aligned_cols=22 Identities=9% Similarity=0.173 Sum_probs=0.0
Q ss_pred CcHHHHHHHcCCChhHHHHHHH
Q 041600 82 LPIEEAARRMKLCPTVVKKICR 103 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~CR 103 (160)
.+++|+|+..|||.+|+-|.-.
T Consensus 9 ~ti~dvA~~aGVS~~TVSrvLn 30 (348)
T 3bil_A 9 PTLKDVARQAGVSIATASRALA 30 (348)
T ss_dssp ----------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHC
Confidence 3566677777777666655543
No 393
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=41.65 E-value=35 Score=23.34 Aligned_cols=43 Identities=9% Similarity=0.047 Sum_probs=36.3
Q ss_pred hccCCCCHHHHHhhcCCcHHHHHHH----cCCChhHHHHHHHHcCCC
Q 041600 66 ERTGKLTLRDLMIYFHLPIEEAARR----MKLCPTVVKKICRRDGLH 108 (160)
Q Consensus 66 ~r~~~lt~~~L~~yF~lP~~eAA~~----Lgv~~T~LKr~CR~~GI~ 108 (160)
.....+|..+|....+++....++- -.++..+|.++|+-+|+.
T Consensus 30 R~~~gltq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v~ 76 (114)
T 3vk0_A 30 RVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVA 76 (114)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHTTTCCCCCHHHHHHHHHHHTSC
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCC
Confidence 5557799999999999999888873 347789999999999994
No 394
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=41.61 E-value=50 Score=21.57 Aligned_cols=43 Identities=5% Similarity=-0.113 Sum_probs=34.3
Q ss_pred hccCCCCHHHHHhhcCCcHHHHHHHc----CCChhHHHHHHHHcCCC
Q 041600 66 ERTGKLTLRDLMIYFHLPIEEAARRM----KLCPTVVKKICRRDGLH 108 (160)
Q Consensus 66 ~r~~~lt~~~L~~yF~lP~~eAA~~L----gv~~T~LKr~CR~~GI~ 108 (160)
.....+|..+|....+++...+.+-. ..+..+|.++|+.+|+.
T Consensus 18 r~~~glsq~~lA~~~gis~~~is~~e~G~~~p~~~~l~~ia~~l~v~ 64 (94)
T 2kpj_A 18 IAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALADYFNIN 64 (94)
T ss_dssp HTTSSSCHHHHHHHHTCCHHHHHHHHTTSCCCCHHHHHHHHHHHTCC
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHhCCCCCCHHHHHHHHHHHCcC
Confidence 44567999999999999988887733 34678899999999983
No 395
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=41.58 E-value=17 Score=24.35 Aligned_cols=25 Identities=4% Similarity=0.077 Sum_probs=20.4
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.++..|.|+.||++.+++-+.-+.+
T Consensus 36 ~~~~~ela~~l~is~~tvs~~L~~L 60 (102)
T 3pqk_A 36 EFSVGELEQQIGIGQPTLSQQLGVL 60 (102)
T ss_dssp CBCHHHHHHHHTCCTTHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4788999999999999887766654
No 396
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=41.56 E-value=15 Score=25.27 Aligned_cols=24 Identities=13% Similarity=0.029 Sum_probs=19.4
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRR 104 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~ 104 (160)
.++..|.|+.|||+.+++.+.-+.
T Consensus 38 ~~s~~eLa~~lgis~stvs~~L~~ 61 (108)
T 2kko_A 38 ERAVEAIATATGMNLTTASANLQA 61 (108)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHH
Confidence 467899999999999888776543
No 397
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=41.52 E-value=14 Score=25.67 Aligned_cols=24 Identities=4% Similarity=0.068 Sum_probs=19.8
Q ss_pred hhcCCcHHHHHHHcCCChhHHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
.|-...+.++|++.|||.+++-+.
T Consensus 29 G~~~~tv~~Ia~~agvs~~t~Y~~ 52 (177)
T 3kkc_A 29 DYSKITVQDVIGLANVGRSTFYSH 52 (177)
T ss_dssp CTTTCCHHHHHHHHCCCHHHHTTT
T ss_pred ChhHhhHHHHHHHhCCcHhhHHHH
Confidence 455799999999999998887654
No 398
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=41.46 E-value=5.5 Score=31.94 Aligned_cols=22 Identities=9% Similarity=0.190 Sum_probs=0.0
Q ss_pred CcHHHHHHHcCCChhHHHHHHH
Q 041600 82 LPIEEAARRMKLCPTVVKKICR 103 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~CR 103 (160)
.+++|+|+..|||.+|+-|.-.
T Consensus 4 ~ti~diA~~aGVS~~TVSrvLn 25 (349)
T 1jye_A 4 VTLYDVAEYAGVSYQTVSRVVN 25 (349)
T ss_dssp ----------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHc
Confidence 4577788888888777766543
No 399
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=41.44 E-value=17 Score=25.12 Aligned_cols=21 Identities=10% Similarity=0.116 Sum_probs=18.1
Q ss_pred CcHHHHHHHcCCChhHHHHHH
Q 041600 82 LPIEEAARRMKLCPTVVKKIC 102 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~C 102 (160)
.+..++|++||++.+.+.|.-
T Consensus 30 ~Ta~~IAkkLg~sK~~vNr~L 50 (75)
T 1sfu_A 30 TTAISLSNRLKINKKKINQQL 50 (75)
T ss_dssp ECHHHHHHHTTCCHHHHHHHH
T ss_pred hHHHHHHHHHCCCHHHHHHHH
Confidence 678889999999998888764
No 400
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=41.41 E-value=17 Score=28.75 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=20.3
Q ss_pred CCc-HHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLP-IEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP-~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
-+| ..+.|+.+|||.+|+++.-+.|
T Consensus 33 ~lPse~~La~~~~vSr~tvr~Al~~L 58 (243)
T 2wv0_A 33 PLPSEREYAEQFGISRMTVRQALSNL 58 (243)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 364 8899999999999999876543
No 401
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=41.22 E-value=14 Score=27.62 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=17.8
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHcCCCCChhHHHhhHHHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKIKSIQRRMSVA 125 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~GI~RWPyRkikSl~~~i~~L 125 (160)
.+++.++|++.|||..+| |+...|.+.++..+
T Consensus 36 ~~s~~~IA~~agvs~~t~-------------Y~~F~~K~~L~~a~ 67 (216)
T 2oi8_A 36 ALSLNAIAKRMGMSGPAL-------------YRYFDGRDELITEL 67 (216)
T ss_dssp SCCHHHHHHHTTCCHHHH-------------HTTCSSHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHH-------------HHHcCCHHHHHHHH
Confidence 455555555555555554 55566666555444
No 402
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=41.18 E-value=18 Score=25.21 Aligned_cols=25 Identities=8% Similarity=0.041 Sum_probs=19.6
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.+++.+.|+.||++.+++-++..++
T Consensus 53 ~~t~~eLa~~l~~~~~tvs~~l~~L 77 (127)
T 2frh_A 53 EYYLKDIINHLNYKQPQVVKAVKIL 77 (127)
T ss_dssp EEEHHHHHHHSSSHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4788999999999988877765543
No 403
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=41.17 E-value=15 Score=25.86 Aligned_cols=24 Identities=8% Similarity=0.079 Sum_probs=17.7
Q ss_pred hhcCCcHHHHHHHcCCChhHHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
.|-.+++.++|++.|||.++|-+.
T Consensus 34 G~~~~ti~~Ia~~agvs~~t~Y~~ 57 (208)
T 3cwr_A 34 GAAAMTMEGVASEAGIAKKTLYRF 57 (208)
T ss_dssp CGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred CHHhccHHHHHHHhCCCHHHHHHH
Confidence 455688888888888887776443
No 404
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=41.12 E-value=19 Score=26.73 Aligned_cols=32 Identities=16% Similarity=0.102 Sum_probs=22.8
Q ss_pred CCCHHHHHhhc----CCcHHHHHHHcCCChhHHHHH
Q 041600 70 KLTLRDLMIYF----HLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 70 ~lt~~~L~~yF----~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
.+++.+|+-+. +-.+..||+.||||.+++-+.
T Consensus 23 ~~~~~~L~~f~av~e~gS~s~AA~~L~iSqsavS~~ 58 (135)
T 2ijl_A 23 RLGHGKVELMQLIAETGSISAAGRAMDMSYRRAWLL 58 (135)
T ss_dssp EESHHHHHHHHHHHHHSCHHHHHHHTTCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCHHHHHHHHCcCHHHHHHH
Confidence 45666665222 357889999999998887654
No 405
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=40.95 E-value=69 Score=23.30 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=36.4
Q ss_pred CCChhHHHHHHHHcCCCCChhHHHhhHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHHHhcc
Q 041600 92 KLCPTVVKKICRRDGLHRWPHRKIKSIQRRMSVASGRLRSNDAEERANAQIEIQRLQEEMAAACAG 157 (160)
Q Consensus 92 gv~~T~LKr~CR~~GI~RWPyRkikSl~~~i~~L~~~~~~~~~eerar~~~eIerL~~Em~~~c~~ 157 (160)
|++...|+.+|+++ |.+|..|+..-=+|+.-+. +..-+|..|..-+..+ |.
T Consensus 41 ~l~~~~L~e~~keL------h~~I~~lEeEKYDlE~kv~--------kq~yEI~eL~~rV~dl-gK 91 (107)
T 1ytz_T 41 HLNEDKLRDKAKEL------WDWLYQLQTEKYDFAEQIK--------RKKYEIVTLRNRIDQA-QK 91 (107)
T ss_dssp SSCSSHHHHHHHHH------HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHT-CC
T ss_pred CCCHHHHHHHHHHH------HHHHHHHHHHHhhHHHHHH--------hhhhHHHHHHHHHHHh-cC
Confidence 34677899999887 8999888887666664443 3345788887777777 53
No 406
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=40.93 E-value=34 Score=25.23 Aligned_cols=43 Identities=9% Similarity=-0.052 Sum_probs=35.8
Q ss_pred hccCCCCHHHHHhhcCCcHHHHHHH----cCCChhHHHHHHHHcCCC
Q 041600 66 ERTGKLTLRDLMIYFHLPIEEAARR----MKLCPTVVKKICRRDGLH 108 (160)
Q Consensus 66 ~r~~~lt~~~L~~yF~lP~~eAA~~----Lgv~~T~LKr~CR~~GI~ 108 (160)
.+...+|.++|....+++....++- -..+..+|.++|+.+|++
T Consensus 20 r~~~gltq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~ia~~l~v~ 66 (192)
T 1y9q_A 20 RKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEAS 66 (192)
T ss_dssp HHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHTCC
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcC
Confidence 4456899999999999999888873 346788999999999984
No 407
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=40.88 E-value=49 Score=21.48 Aligned_cols=43 Identities=19% Similarity=0.225 Sum_probs=35.1
Q ss_pred hccCCCCHHHHHhhcCCcHHHHHHHc----CCChhHHHHHHHHcCCC
Q 041600 66 ERTGKLTLRDLMIYFHLPIEEAARRM----KLCPTVVKKICRRDGLH 108 (160)
Q Consensus 66 ~r~~~lt~~~L~~yF~lP~~eAA~~L----gv~~T~LKr~CR~~GI~ 108 (160)
.....+|..+|....+++...+.+-+ .++..++.++|+-+|++
T Consensus 17 r~~~gltq~~lA~~~gis~~~is~~e~g~~~~~~~~~~~i~~~l~v~ 63 (94)
T 2ict_A 17 LDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSS 63 (94)
T ss_dssp HHHHTCCHHHHHHHHTCCHHHHHHHHHTSSCCCHHHHHHHHHHTCSC
T ss_pred HHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHCcC
Confidence 34457899999999999988887743 46788899999999984
No 408
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=40.85 E-value=30 Score=25.04 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=16.6
Q ss_pred hhcCCcHHHHHHHcCCChhHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKK 100 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr 100 (160)
.|-..++.++|++.|||..+|-+
T Consensus 28 Gy~~ts~~~IA~~aGvsk~tlY~ 50 (202)
T 2i10_A 28 GYEGTSITDLTKALGINPPSLYA 50 (202)
T ss_dssp TTTTCCHHHHHHHHTCCHHHHHH
T ss_pred CcccCCHHHHHHHhCCChHHHHH
Confidence 45567888888888888777644
No 409
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=40.84 E-value=32 Score=26.70 Aligned_cols=27 Identities=11% Similarity=0.105 Sum_probs=23.1
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHcCC
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRDGL 107 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~GI 107 (160)
++++.++|+.||+|.+++.++-|=+.+
T Consensus 52 G~t~eeiA~~lG~s~s~V~~~LrLl~L 78 (178)
T 1r71_A 52 GKKKGDIAKEIGKSPAFITQHVTLLDL 78 (178)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHGGGSC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHcC
Confidence 789999999999999999988775554
No 410
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=40.77 E-value=27 Score=25.22 Aligned_cols=23 Identities=26% Similarity=0.166 Sum_probs=16.0
Q ss_pred hhcCCcHHHHHHHcCCChhHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKK 100 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr 100 (160)
.|-..++.++|++.|||..+|-+
T Consensus 29 G~~~ts~~~IA~~aGvsk~tlY~ 51 (211)
T 3bhq_A 29 GYDGTSMEEIATKAGASKQTVYK 51 (211)
T ss_dssp CSTTCCHHHHHHHHTCCHHHHHH
T ss_pred CcccCCHHHHHHHhCCCHHHHHH
Confidence 44457788888888887777644
No 411
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=40.69 E-value=15 Score=25.75 Aligned_cols=23 Identities=4% Similarity=-0.055 Sum_probs=16.1
Q ss_pred hhcCCcHHHHHHHcCCChhHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKK 100 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr 100 (160)
.|-..++.++|++.|||..+|-+
T Consensus 27 G~~~~t~~~IA~~agvs~~tlY~ 49 (197)
T 3rd3_A 27 GFSGVGLNEILQSAGVPKGSFYH 49 (197)
T ss_dssp CSTTCCHHHHHHHHTCCHHHHTT
T ss_pred CcccCCHHHHHHHhCCChhhHHH
Confidence 44467788888888888776643
No 412
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=40.69 E-value=26 Score=25.89 Aligned_cols=23 Identities=9% Similarity=-0.184 Sum_probs=15.9
Q ss_pred hhcCCcHHHHHHHcCCChhHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKK 100 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr 100 (160)
.|-..++.++|++.|||..+|-+
T Consensus 31 G~~~~s~~~IA~~AGvs~~tlY~ 53 (208)
T 3v6g_A 31 GLGGLSHRRVAAEANVPVGSTTY 53 (208)
T ss_dssp CTTCCCHHHHHHHHTSCHHHHHH
T ss_pred CcccCCHHHHHHHhCCCchhHHH
Confidence 44467777777777777777643
No 413
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=40.67 E-value=19 Score=28.22 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=20.3
Q ss_pred CCc-HHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLP-IEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP-~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
-+| ..+.|+++|||.+|+++.-+.|
T Consensus 28 ~lPse~~La~~~~vSr~tvr~Al~~L 53 (239)
T 3bwg_A 28 KLPVLETLMAQFEVSKSTITKSLELL 53 (239)
T ss_dssp BCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 464 8899999999999999876543
No 414
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=40.61 E-value=15 Score=27.70 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.2
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHc
Q 041600 82 LPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
++..+.|+.+||+++.|.|+-.+|
T Consensus 29 ~s~~~IA~~~~is~~~l~kil~~L 52 (162)
T 3k69_A 29 VASRELAQSLHLNPVMIRNILSVL 52 (162)
T ss_dssp BCHHHHHHHHTSCGGGTHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHH
Confidence 789999999999999999987643
No 415
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=40.60 E-value=33 Score=24.63 Aligned_cols=21 Identities=5% Similarity=-0.129 Sum_probs=12.8
Q ss_pred hhcCCcHHHHHHHcCCChhHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVK 99 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LK 99 (160)
.|- .++.++|++.|||..+|-
T Consensus 29 G~~-~s~~~IA~~agvs~~tiY 49 (224)
T 1t33_A 29 GLH-ATTRDIAALAGQNIAAIT 49 (224)
T ss_dssp GGG-SCHHHHHHHHTSCHHHHH
T ss_pred Ccc-ccHHHHHHHhCCCHHHHH
Confidence 344 666666666666666653
No 416
>3lxr_F IPGB2; RHOA, GTPase, GEF, GEF-GTPase-complex, WXXXE, TTSS EF protein, bacterial GEF, cytoskeleton dynamics; HET: GDP; 1.68A {Shigella flexneri} PDB: 3lwn_F* 3lw8_E* 3lyq_A*
Probab=40.53 E-value=48 Score=26.77 Aligned_cols=43 Identities=12% Similarity=0.307 Sum_probs=30.1
Q ss_pred HHHHHHHHhhhccC-CcHHHHHHHHHHHHH------------------------HHHHHHHHhcccCC
Q 041600 118 IQRRMSVASGRLRS-NDAEERANAQIEIQR------------------------LQEEMAAACAGLTR 160 (160)
Q Consensus 118 l~~~i~~L~~~~~~-~~~eerar~~~eIer------------------------L~~Em~~~c~~~~~ 160 (160)
+++.|+..-..-+. -+.++|+++-..|++ +.+.|+++||||.|
T Consensus 79 VNk~ID~~c~~n~~~Is~e~K~rIF~~v~~~~~~~LD~naAQSSI~H~i~~N~yF~KK~d~lc~g~~~ 146 (192)
T 3lxr_F 79 VNQCIDKFCAEHSRKIGDNLRKQIFKQVEKDYRISLDINAAQSSINHLVSGSSYFKKKMDELCEGMNR 146 (192)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTCCCCTTCCCCHHHHHHHTCHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHhcCCcCChHHHHHHHHHHHHHhCCccchhhhhhhHHHHHhccHHHHHHHHHHhcCCCh
Confidence 35556655444333 377888888877764 67899999999975
No 417
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=40.52 E-value=24 Score=23.28 Aligned_cols=25 Identities=0% Similarity=-0.072 Sum_probs=19.7
Q ss_pred CCcHHHH----HHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEA----ARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eA----A~~Lgv~~T~LKr~CR~~ 105 (160)
.+.+.+. |+.||++.+++-++.+++
T Consensus 22 ~~~~~el~~~la~~l~is~~tvs~~l~~L 50 (99)
T 1tbx_A 22 GIATYDLYKKVNAEFPMSTATFYDAKKFL 50 (99)
T ss_dssp TCBHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4678888 899999998888776544
No 418
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=40.40 E-value=19 Score=25.49 Aligned_cols=42 Identities=10% Similarity=0.080 Sum_probs=32.0
Q ss_pred HHHHHHH----cCCChhHHHHHHHHcCCCCCh-hHHHhhHHHHHHHH
Q 041600 84 IEEAARR----MKLCPTVVKKICRRDGLHRWP-HRKIKSIQRRMSVA 125 (160)
Q Consensus 84 ~~eAA~~----Lgv~~T~LKr~CR~~GI~RWP-yRkikSl~~~i~~L 125 (160)
|-+||.+ -|...+++..||++.||++=- |+...|.+.++..+
T Consensus 21 Il~aa~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 67 (213)
T 2qtq_A 21 LLQTASNIMREGDVVDISLSELSLRSGLNSALVKYYFGNKAGLLKAL 67 (213)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHHHHHHSSHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHhCCChhhHhHhcCCHHHHHHHH
Confidence 3455554 499999999999999998743 88888877666554
No 419
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=40.37 E-value=25 Score=25.40 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=16.3
Q ss_pred hhcCCcHHHHHHHcCCChhHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKK 100 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr 100 (160)
.|-..++.++|++.|||..+|-+
T Consensus 26 G~~~~s~~~IA~~AGvs~gtlY~ 48 (203)
T 2np5_A 26 GLEGASVREVAKRAGVSIGAVQH 48 (203)
T ss_dssp CGGGCCHHHHHHHHTCCHHHHHH
T ss_pred ChhhccHHHHHHHhCCCHHHHHH
Confidence 44567888888888888777644
No 420
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=40.25 E-value=20 Score=25.42 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=19.9
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.+...++|+.||++.+++-+.-+.+
T Consensus 59 ~~s~~ela~~lgis~stvs~~L~~L 83 (122)
T 1r1t_A 59 ELCVGDLAQAIGVSESAVSHQLRSL 83 (122)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4788999999999988887765443
No 421
>2xpw_A Tetracycline repressor protein class D; transcription, transcription regulator, helix-turn-helix, ME coordination; HET: OTC MES; 1.44A {Escherichia coli} PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A* 2o7o_A* 2x6o_A* 2x9d_A* 2xps_A* 2xpt_A* 2vke_A* 2xpu_A* 2xpv_A* 2tct_A* 2xb5_A* 2trt_A* 2xrl_A* 1qpi_A* 1a6i_A ...
Probab=40.24 E-value=21 Score=26.78 Aligned_cols=23 Identities=9% Similarity=-0.041 Sum_probs=16.6
Q ss_pred hhcCCcHHHHHHHcCCChhHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKK 100 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr 100 (160)
.|-.+++.++|+++||++.+|-+
T Consensus 20 G~~~~s~~~IA~~~Gvs~~slY~ 42 (207)
T 2xpw_A 20 GIDGLTTRKLAQKLGIEQPTLYW 42 (207)
T ss_dssp HHHHCCHHHHHHHHTCCHHHHHH
T ss_pred CcccCCHHHHHHHhCCCcchHHH
Confidence 44467888888888888777743
No 422
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=40.22 E-value=24 Score=25.99 Aligned_cols=28 Identities=21% Similarity=0.124 Sum_probs=23.4
Q ss_pred hhcCCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.|-+..+.+.|++.|+|..++.+|+++.
T Consensus 89 ~f~G~n~~eLArkYgLSer~I~~Ii~~~ 116 (129)
T 1rr7_A 89 DFNGRNVSELTTRYGVTFNTVYKAIRRM 116 (129)
T ss_dssp HCCSSCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4446899999999999999999998654
No 423
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=40.16 E-value=4 Score=29.44 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=19.6
Q ss_pred C-cHHHHHHHcCCChhHHHHHHHHc
Q 041600 82 L-PIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 82 l-P~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
+ +..+.|+.||||.|++++..++|
T Consensus 35 lPs~~~La~~~~vSr~tvr~Al~~L 59 (126)
T 3ic7_A 35 IPSVREYASIVEVNANTVMRSYEYL 59 (126)
T ss_dssp ECCTTTTTTCC-CCSGGGHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5 47789999999999999988765
No 424
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=40.14 E-value=37 Score=29.83 Aligned_cols=61 Identities=11% Similarity=0.074 Sum_probs=37.7
Q ss_pred HHHcCCChhHHHHHHHHcCCCCChhHHHhhHHHHHHHHhhhccC--CcHHHHHHHHHHHHHHHHHHHHHh
Q 041600 88 ARRMKLCPTVVKKICRRDGLHRWPHRKIKSIQRRMSVASGRLRS--NDAEERANAQIEIQRLQEEMAAAC 155 (160)
Q Consensus 88 A~~Lgv~~T~LKr~CR~~GI~RWPyRkikSl~~~i~~L~~~~~~--~~~eerar~~~eIerL~~Em~~~c 155 (160)
|+.+.--.+.|+.+.- .|+++++....+..+.+++.. .|++.+.-+.++|+.|+.++..+-
T Consensus 45 ~~~~~ke~~~l~~~v~-------~~~~~~~~~~d~~~~~el~~~~e~D~e~~~~a~~e~~~l~~~l~~le 107 (371)
T 1zbt_A 45 FMELSREEANSRETVA-------VYREYKQVVQNIADAQEMIKDASGDPELEEMAKEELKNSKVAKEEYE 107 (371)
T ss_dssp -----CCHHHHHHHHH-------HHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666532 277888888888888888753 477777778888888888887654
No 425
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=40.09 E-value=32 Score=22.27 Aligned_cols=43 Identities=26% Similarity=0.169 Sum_probs=35.1
Q ss_pred hccCCCCHHHHHhhcCCcHHHHHHH----cCCChhHHHHHHHHcCCC
Q 041600 66 ERTGKLTLRDLMIYFHLPIEEAARR----MKLCPTVVKKICRRDGLH 108 (160)
Q Consensus 66 ~r~~~lt~~~L~~yF~lP~~eAA~~----Lgv~~T~LKr~CR~~GI~ 108 (160)
.....+|..+|....+++...+++- -.++..+|.++|..+|+.
T Consensus 22 r~~~glsq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~la~~l~v~ 68 (91)
T 1x57_A 22 RQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLK 68 (91)
T ss_dssp HHTTTCCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHTBC
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcC
Confidence 4556799999999999998888763 236788999999999983
No 426
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=39.98 E-value=24 Score=25.14 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=13.8
Q ss_pred hcCCcHHHHHHHcCCChhHHHH
Q 041600 79 YFHLPIEEAARRMKLCPTVVKK 100 (160)
Q Consensus 79 yF~lP~~eAA~~Lgv~~T~LKr 100 (160)
|-..++.++|++.|||..+|-+
T Consensus 26 ~~~~t~~~IA~~agvs~~tlY~ 47 (199)
T 2o7t_A 26 HDSLTMENIAEQAGVGVATLYR 47 (199)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHH
T ss_pred CccCCHHHHHHHhCCCHHHHHH
Confidence 4456666777777776666643
No 427
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=39.83 E-value=18 Score=26.06 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=16.0
Q ss_pred hhcCCcHHHHHHHcCCChhHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKK 100 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr 100 (160)
.| ..++.++|++.|||..+|-+
T Consensus 30 G~-~~t~~~IA~~agvs~~tlY~ 51 (196)
T 2qwt_A 30 GL-GVPMDEIARRAGVGAGTVYR 51 (196)
T ss_dssp CT-TSCHHHHHHHTTSCHHHHHH
T ss_pred CC-CCCHHHHHHHhCCCHHHHHH
Confidence 44 77888888888888777644
No 428
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=39.81 E-value=80 Score=22.62 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=18.7
Q ss_pred CCcHHHHHHHcC-----CChhHHHHHHHHcCC
Q 041600 81 HLPIEEAARRMK-----LCPTVVKKICRRDGL 107 (160)
Q Consensus 81 ~lP~~eAA~~Lg-----v~~T~LKr~CR~~GI 107 (160)
.+++.++|+.+| ||.+.+-.+ +.|.
T Consensus 24 ~lT~~elA~~~~~~G~~iS~s~is~i--E~G~ 53 (123)
T 3qwg_A 24 PHTSAEVIAALKAEGITMSAPYLSQL--RSGN 53 (123)
T ss_dssp SCCHHHHHHHHHHTTCCCCHHHHHHH--HHTS
T ss_pred CCCHHHHHHHHcccCCCcCHHHHHHH--HcCC
Confidence 377888888887 888777777 5555
No 429
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=39.74 E-value=18 Score=25.38 Aligned_cols=42 Identities=12% Similarity=0.086 Sum_probs=31.4
Q ss_pred HHHHHHHc----CCChhHHHHHHHHcCCCC-ChhHHHhhHHHHHHHH
Q 041600 84 IEEAARRM----KLCPTVVKKICRRDGLHR-WPHRKIKSIQRRMSVA 125 (160)
Q Consensus 84 ~~eAA~~L----gv~~T~LKr~CR~~GI~R-WPyRkikSl~~~i~~L 125 (160)
|-+||.+| |+..++++.||++.||++ ==|+...+.+.++..+
T Consensus 19 Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 65 (203)
T 3f1b_A 19 MLDAAVDVFSDRGFHETSMDAIAAKAEISKPMLYLYYGSKDELFAAC 65 (203)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHhCCchHHHHHHhCCHHHHHHHH
Confidence 45565544 999999999999999976 4477777776665444
No 430
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=39.71 E-value=18 Score=26.52 Aligned_cols=24 Identities=8% Similarity=0.152 Sum_probs=20.9
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHc
Q 041600 82 LPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
++..+.|+.+||++..|.++-.+|
T Consensus 29 ~s~~~IA~~~~i~~~~l~kil~~L 52 (143)
T 3t8r_A 29 ISLKSIAEENNLSDLYLEQLVGPL 52 (143)
T ss_dssp EEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHH
Confidence 789999999999999999887643
No 431
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=39.66 E-value=15 Score=25.54 Aligned_cols=24 Identities=8% Similarity=0.044 Sum_probs=21.0
Q ss_pred hhcCCcHHHHHHHcCCChhHHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
.|-..++.++|++.|||.++|-+.
T Consensus 25 G~~~~ti~~Ia~~agvs~~t~Y~~ 48 (188)
T 3qkx_A 25 GLNQLSMLKLAKEANVAAGTIYLY 48 (188)
T ss_dssp CSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred CcccCCHHHHHHHhCCCcchHHHH
Confidence 455799999999999999999876
No 432
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=39.54 E-value=23 Score=24.95 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=16.6
Q ss_pred hhcCCcHHHHHHHcCCChhHHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
.|-.+.+.++|++.|||..+|-+.
T Consensus 37 G~~~~t~~~Ia~~agvs~~t~Y~~ 60 (203)
T 3mnl_A 37 GYEAVQMRAVADRADVAVGTLYRY 60 (203)
T ss_dssp HHHHCCHHHHHHHHTCCHHHHHHH
T ss_pred CCccCCHHHHHHHcCCChhHHHHH
Confidence 444577788888888877776443
No 433
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=39.43 E-value=6 Score=23.98 Aligned_cols=15 Identities=40% Similarity=0.811 Sum_probs=13.2
Q ss_pred CCccchHHHHHHHHH
Q 041600 1 FCKKSIENVKEYLVQ 15 (160)
Q Consensus 1 ~~~ks~~~vk~~L~~ 15 (160)
||+|-|..||+.+..
T Consensus 14 fckkkysdvknlikh 28 (37)
T 2elu_A 14 FCKKKYSDVKNLIKH 28 (37)
T ss_dssp TTTEECSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998753
No 434
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=39.42 E-value=17 Score=25.46 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=30.7
Q ss_pred HHHHHHHc----CCChhHHHHHHHHcCCCC-ChhHHHhhHHHHHHHH
Q 041600 84 IEEAARRM----KLCPTVVKKICRRDGLHR-WPHRKIKSIQRRMSVA 125 (160)
Q Consensus 84 ~~eAA~~L----gv~~T~LKr~CR~~GI~R-WPyRkikSl~~~i~~L 125 (160)
|-+||.+| |...+++..||++.||++ =-|+..+|.+..+..+
T Consensus 13 Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 59 (183)
T 1zk8_A 13 IVETAAEIADANGVQEVTLASLAQTLGVRSPSLYNHVKGLQDVRKNL 59 (183)
T ss_dssp HHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccCHHHHHHHcCCCchHHHHHcCCHHHHHHHH
Confidence 44555544 999999999999999977 3377777766655544
No 435
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=39.37 E-value=37 Score=25.01 Aligned_cols=43 Identities=19% Similarity=0.071 Sum_probs=35.6
Q ss_pred hccCCCCHHHHHhhcCCcHHHHHHH----c-CCChhHHHHHHHHcCCC
Q 041600 66 ERTGKLTLRDLMIYFHLPIEEAARR----M-KLCPTVVKKICRRDGLH 108 (160)
Q Consensus 66 ~r~~~lt~~~L~~yF~lP~~eAA~~----L-gv~~T~LKr~CR~~GI~ 108 (160)
.+...+|.++|....+++.....+- - ..+..+|.++|+.+|+.
T Consensus 19 r~~~g~s~~~la~~~gis~~~ls~~e~g~~~~p~~~~l~~ia~~l~~~ 66 (198)
T 2bnm_A 19 REQVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGTS 66 (198)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHTTTCTTCBHHHHHHHHHHTTSC
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCC
Confidence 4456899999999999999888772 3 46778899999999983
No 436
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=39.35 E-value=18 Score=27.02 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=18.9
Q ss_pred CCcHHHHHHHcCCChhHHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICR 103 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR 103 (160)
.+++.+.|..||+++.+|-|+-+
T Consensus 186 ~~t~~~lA~~lG~sr~tvsR~l~ 208 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNISKTLN 208 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCHHHHHHHhCCChhHHHHHHH
Confidence 47899999999999887776644
No 437
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=39.19 E-value=33 Score=24.75 Aligned_cols=35 Identities=3% Similarity=-0.080 Sum_probs=17.7
Q ss_pred CCChhHHHHHHHHcCCCC-ChhHHHhhHHHHHHHHh
Q 041600 92 KLCPTVVKKICRRDGLHR-WPHRKIKSIQRRMSVAS 126 (160)
Q Consensus 92 gv~~T~LKr~CR~~GI~R-WPyRkikSl~~~i~~L~ 126 (160)
|+..+++..||++.||++ ==|+...+.+.++..+-
T Consensus 45 G~~~~tv~~IA~~agvs~~t~Y~~F~sK~~Ll~~~~ 80 (215)
T 2qko_A 45 GARGLTFRAVDVEANVPKGTASNYFPSRDDLFDQVG 80 (215)
T ss_dssp CTTTCCHHHHHHHSSSTTTCHHHHCSCHHHHHHHHH
T ss_pred ChhhccHHHHHHHcCCCcchHHHhCCCHHHHHHHHH
Confidence 444555555555555533 23555566555555443
No 438
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=39.02 E-value=25 Score=25.19 Aligned_cols=23 Identities=9% Similarity=0.098 Sum_probs=15.2
Q ss_pred hhcCCcHHHHHHHcCCChhHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKK 100 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr 100 (160)
.|-.+.+.++|++.|||..+|-+
T Consensus 47 G~~~~t~~~IA~~aGvs~~t~Y~ 69 (222)
T 3bru_A 47 GYSSVGVDEILKAARVPKGSFYH 69 (222)
T ss_dssp CTTTCCHHHHHHHHTCCHHHHHH
T ss_pred CCCcCcHHHHHHHhCCCcchhhh
Confidence 34467777777777777666644
No 439
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=38.98 E-value=27 Score=25.48 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=17.8
Q ss_pred CCcHHHHHHHcCCChhHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
+++.+++|+.|++|..|++..
T Consensus 169 g~s~~~Ia~~l~is~~TV~~h 189 (215)
T 1a04_A 169 GLPNKMIARRLDITESTVKVH 189 (215)
T ss_dssp TCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHH
Confidence 678999999999998877654
No 440
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=38.98 E-value=25 Score=25.71 Aligned_cols=25 Identities=8% Similarity=0.061 Sum_probs=21.7
Q ss_pred CCcHHHHHHHcCC-ChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKL-CPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv-~~T~LKr~CR~~ 105 (160)
+.++.++|+..|| |.+||-+...++
T Consensus 28 G~sl~~i~~~~~~ps~~T~~~W~~~~ 53 (140)
T 4dyq_A 28 GESLLKVCKRPGMPDKSTVFRWLAKH 53 (140)
T ss_dssp TCCHHHHHTSTTCCCHHHHHHHHHHC
T ss_pred CCcHHHHHhcCCCCCHHHHHHHHHcC
Confidence 7899999999999 889998887765
No 441
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=38.94 E-value=17 Score=25.52 Aligned_cols=21 Identities=10% Similarity=-0.149 Sum_probs=12.4
Q ss_pred hcCCcHHHHHHHcCCChhHHH
Q 041600 79 YFHLPIEEAARRMKLCPTVVK 99 (160)
Q Consensus 79 yF~lP~~eAA~~Lgv~~T~LK 99 (160)
|-.+++.++|++.|||..+|-
T Consensus 35 ~~~~s~~~Ia~~agvs~~t~Y 55 (206)
T 3kz9_A 35 IGRGGHADIAEIAQVSVATVF 55 (206)
T ss_dssp CSSCCHHHHHHHHTSCHHHHH
T ss_pred cccccHHHHHHHhCCCHHHHH
Confidence 334666666666666666553
No 442
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=38.89 E-value=16 Score=26.79 Aligned_cols=23 Identities=9% Similarity=0.049 Sum_probs=14.5
Q ss_pred hhcCCcHHHHHHHcCCChhHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKK 100 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr 100 (160)
.|-.+.+.++|++.|||..+|-+
T Consensus 22 G~~~~t~~~IA~~Agvs~~t~Y~ 44 (228)
T 3nnr_A 22 GERNITTNHIAAHLAISPGNLYY 44 (228)
T ss_dssp CGGGCCHHHHHHHHTCCHHHHHH
T ss_pred ChhhcCHHHHHHHhCCCCccchh
Confidence 34456777777777777666644
No 443
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=38.89 E-value=60 Score=24.63 Aligned_cols=28 Identities=11% Similarity=0.247 Sum_probs=18.1
Q ss_pred HHHHHhhcCCcHHHHHHHcCCChhHHHHH
Q 041600 73 LRDLMIYFHLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 73 ~~~L~~yF~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
+..++.--++++.+.|+.+ ||.+++.++
T Consensus 10 i~~~R~~~~~tq~~la~~~-~s~~~~s~~ 37 (293)
T 3u3w_A 10 IKKIRVLRGLTQKQLSENI-CHQSEVSRI 37 (293)
T ss_dssp HHHHHHHTTCCHHHHHTTT-SCHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHh-CCHHHHHHH
Confidence 4455666677777777777 776655555
No 444
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=38.86 E-value=20 Score=25.77 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=19.2
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHc
Q 041600 82 LPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
+++.+.|+.+||+.+++-++..++
T Consensus 53 ~t~~eLa~~l~~~~~tvsr~v~~L 76 (148)
T 4fx0_A 53 LTMSELAARIGVERTTLTRNLEVM 76 (148)
T ss_dssp -CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCHHHHHHHHCCChhhHHHHHHHH
Confidence 689999999999988877776544
No 445
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=38.82 E-value=16 Score=25.88 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=15.0
Q ss_pred hhcCCcHHHHHHHcCCChhHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVK 99 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LK 99 (160)
.|-..++.++|++.|||..+|-
T Consensus 20 G~~~~s~~~IA~~agvsk~t~Y 41 (190)
T 3vpr_A 20 GYEATSVQDLAQALGLSKAALY 41 (190)
T ss_dssp CSTTCCHHHHHHHHTCCHHHHH
T ss_pred CcccCCHHHHHHHhCCCHHHHH
Confidence 3445777777777777776663
No 446
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=38.74 E-value=42 Score=20.01 Aligned_cols=22 Identities=45% Similarity=0.508 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 041600 134 AEERANAQIEIQRLQEEMAAAC 155 (160)
Q Consensus 134 ~eerar~~~eIerL~~Em~~~c 155 (160)
.||.+.+..+|+.+++|+..+.
T Consensus 8 keeqaaieeeiqaikeeiaaik 29 (36)
T 1bb1_B 8 KEEQAAIEEEIQAIKEEIAAIK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888899999999987653
No 447
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=38.73 E-value=21 Score=28.13 Aligned_cols=25 Identities=8% Similarity=0.042 Sum_probs=19.5
Q ss_pred CCc-HHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLP-IEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP-~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.+| ..+.|+.+|||.+|+++.-..|
T Consensus 32 ~lPse~~La~~~~vSr~tvr~Al~~L 57 (236)
T 3edp_A 32 LMPNETALQEIYSSSRTTIRRAVDLL 57 (236)
T ss_dssp --CCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 464 8899999999999999876644
No 448
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=38.72 E-value=27 Score=24.76 Aligned_cols=83 Identities=13% Similarity=0.091 Sum_probs=48.5
Q ss_pred CCCCHHHHH------hhcCCcHHHHHHHcCCChhHHHHHHHHc---C-CCCChh----------------HHHhhHHHHH
Q 041600 69 GKLTLRDLM------IYFHLPIEEAARRMKLCPTVVKKICRRD---G-LHRWPH----------------RKIKSIQRRM 122 (160)
Q Consensus 69 ~~lt~~~L~------~yF~lP~~eAA~~Lgv~~T~LKr~CR~~---G-I~RWPy----------------RkikSl~~~i 122 (160)
..||..++. ..=.+++.+.|+.|||+.+++-++..++ | |.|-|. .-+..+...+
T Consensus 49 ~glt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~~~~ 128 (161)
T 3e6m_A 49 EKLPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEISPLI 128 (161)
T ss_dssp HTCCHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHHHHHHH
Confidence 457766654 2225789999999999988888877654 3 333332 1122222222
Q ss_pred HHHh-hhccCCcHHHHHHHHHHHHHHHHHH
Q 041600 123 SVAS-GRLRSNDAEERANAQIEIQRLQEEM 151 (160)
Q Consensus 123 ~~L~-~~~~~~~~eerar~~~eIerL~~Em 151 (160)
..+. ..+..-+++|.+....-++++.+-+
T Consensus 129 ~~~~~~~~~~l~~~e~~~l~~~L~~l~~~l 158 (161)
T 3e6m_A 129 NDFHAELVGNVDPDKLQTCIEVLGEILKGK 158 (161)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 2222 2234457777777777777766543
No 449
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=38.72 E-value=18 Score=25.17 Aligned_cols=24 Identities=4% Similarity=0.087 Sum_probs=17.0
Q ss_pred hhcCCcHHHHHHHcCCChhHHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
.|-.+++.++|++.|||.++|-+.
T Consensus 25 G~~~~ti~~Ia~~agvs~~t~Y~~ 48 (194)
T 2g7s_A 25 GYNSFSYADISQVVGIRNASIHHH 48 (194)
T ss_dssp CGGGCCHHHHHHHHCCCHHHHHHH
T ss_pred CcccCCHHHHHHHhCCCchHHHHH
Confidence 445678888888888887776443
No 450
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=38.70 E-value=31 Score=27.01 Aligned_cols=25 Identities=12% Similarity=0.117 Sum_probs=21.5
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.+++.|.|+.||++.+++-|+.+.|
T Consensus 23 ~~~~~ela~~~gl~~stv~r~l~~L 47 (249)
T 1mkm_A 23 DVSVSEIAEKFNMSVSNAYKYMVVL 47 (249)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4889999999999999998887644
No 451
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=38.48 E-value=13 Score=26.12 Aligned_cols=69 Identities=14% Similarity=0.177 Sum_probs=40.1
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc---C-CCCChh----------------HHHhhHHHHHHHH-hhhccCCcHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD---G-LHRWPH----------------RKIKSIQRRMSVA-SGRLRSNDAEERAN 139 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~---G-I~RWPy----------------RkikSl~~~i~~L-~~~~~~~~~eerar 139 (160)
.+++.+.|+.||++.+++-++..++ | |.|=|. .-+..+......+ ...+..-++++...
T Consensus 62 ~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~ 141 (160)
T 3boq_A 62 GLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFKQASEAHNRILAELLRAVSDQDMVE 141 (160)
T ss_dssp CEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred CCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4789999999999977766665533 4 333321 1122223333333 23344557788777
Q ss_pred HHHHHHHHHH
Q 041600 140 AQIEIQRLQE 149 (160)
Q Consensus 140 ~~~eIerL~~ 149 (160)
...-++++.+
T Consensus 142 l~~~l~~l~~ 151 (160)
T 3boq_A 142 ASAALRGILE 151 (160)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777664
No 452
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=38.34 E-value=19 Score=25.58 Aligned_cols=24 Identities=4% Similarity=-0.004 Sum_probs=16.9
Q ss_pred hhcCCcHHHHHHHcCCChhHHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
.|-..++.++|++.|||..+|-+.
T Consensus 31 G~~~~ti~~IA~~agvs~~t~Y~~ 54 (212)
T 3knw_A 31 GFVGVGLQEILKTSGVPKGSFYHY 54 (212)
T ss_dssp CSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred CCccCCHHHHHHHhCCChHHHHHH
Confidence 445677888888888887776543
No 453
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=38.25 E-value=14 Score=26.22 Aligned_cols=22 Identities=5% Similarity=-0.031 Sum_probs=11.9
Q ss_pred hhcCCcHHHHHHHcCCChhHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVK 99 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LK 99 (160)
.|-..++.++|++.|||..+|-
T Consensus 42 G~~~~t~~~Ia~~agvs~~t~Y 63 (212)
T 3nxc_A 42 GSQRITTAKLAASVGVSEAALY 63 (212)
T ss_dssp ----CCHHHHHHHTTSCHHHHH
T ss_pred ChhhcCHHHHHHHhCCChhHHH
Confidence 3445666666666676666653
No 454
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=38.18 E-value=19 Score=25.45 Aligned_cols=24 Identities=8% Similarity=-0.129 Sum_probs=17.5
Q ss_pred hhcCCcHHHHHHHcCCChhHHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
.|-.+++.++|++.|||.++|-+.
T Consensus 31 G~~~~ti~~Ia~~agvs~~t~Y~~ 54 (220)
T 3lhq_A 31 GVSATSLAEIANAAGVTRGAIYWH 54 (220)
T ss_dssp CSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred CcccCCHHHHHHHhCCCceeehhh
Confidence 444688888888888887777544
No 455
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=38.17 E-value=17 Score=25.18 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=14.5
Q ss_pred hcCCcHHHHHHHcCCChhHHHH
Q 041600 79 YFHLPIEEAARRMKLCPTVVKK 100 (160)
Q Consensus 79 yF~lP~~eAA~~Lgv~~T~LKr 100 (160)
|-..++.++|++.|||.++|-+
T Consensus 22 ~~~~t~~~Ia~~agvs~~t~Y~ 43 (170)
T 3egq_A 22 PHEVSIEEIAREAKVSKSLIFY 43 (170)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHH
T ss_pred CccCcHHHHHHHhCCCchhHHH
Confidence 4456777777777777776643
No 456
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=38.01 E-value=31 Score=23.26 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=21.6
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHcC
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRDG 106 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~G 106 (160)
.++..|+|+.||++.+++-+.-+.+-
T Consensus 41 ~~~~~ela~~l~is~stvs~hL~~L~ 66 (99)
T 2zkz_A 41 ALNVTQIIQILKLPQSTVSQHLCKMR 66 (99)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHB
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 47899999999999999887766554
No 457
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=38.00 E-value=21 Score=24.01 Aligned_cols=18 Identities=17% Similarity=0.135 Sum_probs=14.2
Q ss_pred HHHHHHHcCCChhHHHHH
Q 041600 84 IEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 84 ~~eAA~~Lgv~~T~LKr~ 101 (160)
..+.|..||++.+.+|--
T Consensus 51 r~~La~~lgL~~~~VkvW 68 (80)
T 1wh5_A 51 IQRFCQETGVPRQVLKVW 68 (80)
T ss_dssp HHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHhCCCcccccCC
Confidence 456699999999988843
No 458
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=37.97 E-value=19 Score=20.13 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=17.3
Q ss_pred cHHHHHHHcCCChhHHHHHHHHcCC.
Q 041600 83 PIEEAARRMKLCPTVVKKICRRDGL. 107 (160)
Q Consensus 83 P~~eAA~~Lgv~~T~LKr~CR~~GI. 107 (160)
++-++|+.|.+ +.+|+..|++||
T Consensus 3 yIp~IAe~M~~--~~Vk~fvR~~gi. 25 (25)
T 3ewt_E 3 YITTIAGVMTL--SQVKGFVRKNGVx 26 (26)
T ss_pred chhHHHHHHhH--HHHHHHHHHcCC.
Confidence 35567777765 668999999986
No 459
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=37.92 E-value=24 Score=24.99 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=21.4
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
.+.+.+.|+.++++.|+|.|...++
T Consensus 36 ~~s~~eLa~~l~l~~stLsR~l~rL 60 (96)
T 2obp_A 36 PWSLPKIAKRAQLPMSVLRRVLTQL 60 (96)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHhCCchhhHHHHHHHH
Confidence 4799999999999999999886554
No 460
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=37.78 E-value=24 Score=25.22 Aligned_cols=42 Identities=19% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHc----CCChhHHHHHHHHcCCCC-ChhHHHhhHHHHHHHH
Q 041600 84 IEEAARRM----KLCPTVVKKICRRDGLHR-WPHRKIKSIQRRMSVA 125 (160)
Q Consensus 84 ~~eAA~~L----gv~~T~LKr~CR~~GI~R-WPyRkikSl~~~i~~L 125 (160)
|-+||.+| |...|++..||++.||++ -=|+-.+|.+..+..+
T Consensus 19 Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~yF~sKe~L~~~~ 65 (203)
T 3ccy_A 19 IIERAAAMFARQGYSETSIGDIARACECSKSRLYHYFDSKEAVLRDM 65 (203)
T ss_dssp HHHHHHHHHHHTCTTTSCHHHHHHHTTCCGGGGTTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccCCHHHHHHHhCCCcCeeeeeeCCHHHHHHHH
No 461
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=37.65 E-value=28 Score=25.32 Aligned_cols=24 Identities=8% Similarity=-0.043 Sum_probs=16.4
Q ss_pred hhcCCcHHHHHHHcCCChhHHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
.|-..++.++|++.|||..+|-+.
T Consensus 41 G~~~~s~~~IA~~aGvskgtlY~y 64 (214)
T 2oer_A 41 GAQRFTTARVAERAGVSIGSLYQY 64 (214)
T ss_dssp --CCCCHHHHHHHHTCCHHHHHHH
T ss_pred CcccccHHHHHHHhCCCCchHHHh
Confidence 445678888888888887777443
No 462
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=37.63 E-value=18 Score=25.86 Aligned_cols=23 Identities=17% Similarity=0.301 Sum_probs=16.9
Q ss_pred hhcCCcHHHHHHHcCCChhHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKK 100 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr 100 (160)
.|-..++.++|++.|||..+|-+
T Consensus 29 G~~~~t~~~IA~~agvsk~tlY~ 51 (192)
T 2fq4_A 29 GFKAVTVDKIAERAKVSKATIYK 51 (192)
T ss_dssp CTTTCCHHHHHHHHTCCHHHHHH
T ss_pred CcccccHHHHHHHcCCCHHHHHH
Confidence 45568888888888888777644
No 463
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=37.62 E-value=29 Score=23.93 Aligned_cols=23 Identities=9% Similarity=0.062 Sum_probs=20.0
Q ss_pred cHHHHHHHcCCChhHHHHHHHHc
Q 041600 83 PIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 83 P~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
++.+.|+.||++.+++-+..+++
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~L 74 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKL 74 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCCChhHHHHHHHHH
Confidence 79999999999998888877755
No 464
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=37.46 E-value=19 Score=25.05 Aligned_cols=23 Identities=13% Similarity=0.052 Sum_probs=15.3
Q ss_pred hhcCCcHHHHHHHcCCChhHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKK 100 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr 100 (160)
.|-..++.++|++.|||..++-+
T Consensus 27 G~~~~ti~~Ia~~agvs~~t~Y~ 49 (196)
T 3col_A 27 GPAGVSTTKVAKRVGIAQSNVYL 49 (196)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHT
T ss_pred CcccCCHHHHHHHhCCcHHHHHH
Confidence 34467777777777777766643
No 465
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=37.44 E-value=20 Score=25.71 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=31.5
Q ss_pred HHHHHHHc----CCChhHHHHHHHHcCCCC-ChhHHHhhHHHHHHHHh
Q 041600 84 IEEAARRM----KLCPTVVKKICRRDGLHR-WPHRKIKSIQRRMSVAS 126 (160)
Q Consensus 84 ~~eAA~~L----gv~~T~LKr~CR~~GI~R-WPyRkikSl~~~i~~L~ 126 (160)
|-+||.+| |. .+++..||++.||++ ==|+...|.+.++..+-
T Consensus 18 Il~aA~~lf~~~G~-~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~ 64 (196)
T 2qwt_A 18 VLEVAYDTFAAEGL-GVPMDEIARRAGVGAGTVYRHFPTKQALVVAVA 64 (196)
T ss_dssp HHHHHHHHHHHTCT-TSCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHH
Confidence 44555544 99 799999999999977 44888888777766553
No 466
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=37.43 E-value=29 Score=24.25 Aligned_cols=22 Identities=9% Similarity=0.074 Sum_probs=16.8
Q ss_pred cCCcHHHHHHHcCCChhHHHHH
Q 041600 80 FHLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 80 F~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
-..++.++|++.|||..+|-+.
T Consensus 31 ~~~t~~~Ia~~agvs~~t~Y~~ 52 (190)
T 2v57_A 31 PTAALGDIAAAAGVGRSTVHRY 52 (190)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHH
Confidence 4578888888888888887543
No 467
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=37.41 E-value=24 Score=27.07 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=0.0
Q ss_pred hhhccCCCCHHHHH----------hhcCCcHHHHHHHcCCChhHH
Q 041600 64 QRERTGKLTLRDLM----------IYFHLPIEEAARRMKLCPTVV 98 (160)
Q Consensus 64 ~r~r~~~lt~~~L~----------~yF~lP~~eAA~~Lgv~~T~L 98 (160)
.|.+...+|.+.|- .|-.+++.++|+++|||..+|
T Consensus 9 ~r~~~~~~~r~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tl 53 (237)
T 2hxo_A 9 PERRQEPLSRERIVGAAVELLDTVGERGLTFRALAERLATGPGAI 53 (237)
T ss_dssp -------CCHHHHHHHHHHHHHHTTTTTCCHHHHHHHHTSCGGGG
T ss_pred CCCCCCccCHHHHHHHHHHHHHhcCcccCCHHHHHHHHCCChHHH
No 468
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=37.39 E-value=26 Score=25.20 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHc----CCChhHHHHHHHHcCCCC-ChhHHHhhHHHHHHHH
Q 041600 84 IEEAARRM----KLCPTVVKKICRRDGLHR-WPHRKIKSIQRRMSVA 125 (160)
Q Consensus 84 ~~eAA~~L----gv~~T~LKr~CR~~GI~R-WPyRkikSl~~~i~~L 125 (160)
|-+||.+| |...|++..||++.||++ --|+..+|.+.++..+
T Consensus 16 Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~~F~sKe~L~~~~ 62 (210)
T 2xdn_A 16 IIEAAERAFYKRGVARTTLADIAELAGVTRGAIYWHFNNKAELVQAL 62 (210)
T ss_dssp HHHHHHHHHHHHCSTTCCHHHHHHHHTCCTTHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccCcHHHHHHHHCCChHHHHHHhCCHHHHHHHH
No 469
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=37.32 E-value=26 Score=23.30 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=20.7
Q ss_pred hhcCCcHHHHHHHcCCChhHHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
.|+..|+.++|..|||+...+.++
T Consensus 45 GYL~~~l~eia~~l~~~~~eve~v 68 (76)
T 2k9l_A 45 GFLSKSVEEISDVLRCSVEELEKV 68 (76)
T ss_dssp STTCCCHHHHHHHHTSCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCCHHHHHHH
Confidence 789999999999999997777665
No 470
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=37.28 E-value=31 Score=25.30 Aligned_cols=23 Identities=9% Similarity=-0.171 Sum_probs=15.8
Q ss_pred hhcCCcHHHHHHHcCCChhHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKK 100 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr 100 (160)
.|-.+++.++|++.|||..+|-+
T Consensus 45 G~~~~t~~~IA~~aGvs~~tlY~ 67 (217)
T 3hta_A 45 GIAGLSHRTVAAEADVPLGSTTY 67 (217)
T ss_dssp TGGGCCHHHHHHHHTCCHHHHHH
T ss_pred CcccCCHHHHHHHcCCCcchhhh
Confidence 44467777777777777777643
No 471
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=37.28 E-value=20 Score=25.44 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=14.2
Q ss_pred CCcHHHHHHHcCCChhHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKK 100 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr 100 (160)
+..+.++|++.|||..+|-+
T Consensus 34 ~~s~~~IA~~agvs~~tlY~ 53 (194)
T 2q24_A 34 DAHLERIAREAGVGSGTLYR 53 (194)
T ss_dssp TCCHHHHHHHTTCCHHHHHH
T ss_pred CCCHHHHHHHhCCChHHHHH
Confidence 47777777777777777644
No 472
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=37.19 E-value=19 Score=25.64 Aligned_cols=42 Identities=10% Similarity=0.061 Sum_probs=32.1
Q ss_pred HHHHHHHc----CCChhHHHHHHHHcCCCC-ChhHHHhhHHHHHHHH
Q 041600 84 IEEAARRM----KLCPTVVKKICRRDGLHR-WPHRKIKSIQRRMSVA 125 (160)
Q Consensus 84 ~~eAA~~L----gv~~T~LKr~CR~~GI~R-WPyRkikSl~~~i~~L 125 (160)
|-+||.+| |..-|++..||++.||++ =-|+...|.+.++..+
T Consensus 12 Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~F~sKe~L~~a~ 58 (178)
T 4hku_A 12 ILNMAEKIIYEKGMEKTTLYDIASNLNVTHAALYKHYRNKEDLFQKL 58 (178)
T ss_dssp HHHHHHHHHHHHCGGGCCHHHHHHHTTSCGGGGGGTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccccHHHHHHHhCcCHhHHHHHCCCHHHHHHHH
Confidence 44566554 999999999999999976 5588888877665443
No 473
>2vpr_A Tetracycline resistance repressor protein; transcription, metal-binding, antibiotic resistance, transcr regulator; HET: TDC; 2.49A {Pasteurella multocida}
Probab=37.07 E-value=20 Score=26.99 Aligned_cols=22 Identities=9% Similarity=-0.001 Sum_probs=15.7
Q ss_pred hhcCCcHHHHHHHcCCChhHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVK 99 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LK 99 (160)
.|-.+++.++|+++|||.++|-
T Consensus 21 G~~~~s~~~IA~~agvs~~tlY 42 (207)
T 2vpr_A 21 GIEGLTTRKLAQKIGVEQPTLY 42 (207)
T ss_dssp HHHHCCHHHHHHHHTCCHHHHT
T ss_pred CcccCCHHHHHHHhCCChhHHH
Confidence 3445778888888888877763
No 474
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=37.05 E-value=22 Score=24.70 Aligned_cols=24 Identities=8% Similarity=0.140 Sum_probs=16.9
Q ss_pred hhcCCcHHHHHHHcCCChhHHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
.|-..++.++|++.|||.++|-+.
T Consensus 27 G~~~~t~~~IA~~agvs~~t~Y~~ 50 (191)
T 3on4_A 27 GYNAFSFKDIATAINIKTASIHYH 50 (191)
T ss_dssp CGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred CcccCCHHHHHHHhCCCcchhhhc
Confidence 444678888888888887776443
No 475
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=37.03 E-value=23 Score=26.33 Aligned_cols=70 Identities=10% Similarity=0.125 Sum_probs=42.0
Q ss_pred CCcHHHHHHHcCCChhHHHHHHHHc---C-CCCChh----------------HHHhhHHHHHHHH-hhhccCCcHHHHHH
Q 041600 81 HLPIEEAARRMKLCPTVVKKICRRD---G-LHRWPH----------------RKIKSIQRRMSVA-SGRLRSNDAEERAN 139 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~LKr~CR~~---G-I~RWPy----------------RkikSl~~~i~~L-~~~~~~~~~eerar 139 (160)
.+++.+.|+.||++.+++-++.+++ | |.|-|. .-+..+......+ ...+..-++++.+.
T Consensus 57 ~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~ 136 (189)
T 3nqo_A 57 ETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTCSRTGINFMADVFHEFTKDELET 136 (189)
T ss_dssp GCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4889999999999988888877755 4 333221 1122222222222 23344557787777
Q ss_pred HHHHHHHHHHH
Q 041600 140 AQIEIQRLQEE 150 (160)
Q Consensus 140 ~~~eIerL~~E 150 (160)
...-+.++.+-
T Consensus 137 l~~~L~~l~~~ 147 (189)
T 3nqo_A 137 LWSLLKKMYRF 147 (189)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 77666666543
No 476
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=37.00 E-value=16 Score=30.66 Aligned_cols=35 Identities=17% Similarity=0.327 Sum_probs=23.9
Q ss_pred HHHhhcCCcHHHHHHHcCCC---------hhHHHHHHHHcCCCC
Q 041600 75 DLMIYFHLPIEEAARRMKLC---------PTVVKKICRRDGLHR 109 (160)
Q Consensus 75 ~L~~yF~lP~~eAA~~Lgv~---------~T~LKr~CR~~GI~R 109 (160)
-|..||.|+-.+|.+.|.+- +..+=+.|+.+||.|
T Consensus 225 lLe~ffem~~~da~~al~iykrf~~Q~e~L~~Fy~~ck~l~l~~ 268 (310)
T 3zym_A 225 LLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDR 268 (310)
T ss_dssp HHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45579999999999999874 233445777877644
No 477
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=36.98 E-value=24 Score=26.19 Aligned_cols=27 Identities=11% Similarity=0.116 Sum_probs=20.9
Q ss_pred CCcHHHHHHHcCCChhHH----HHHHHHcCC
Q 041600 81 HLPIEEAARRMKLCPTVV----KKICRRDGL 107 (160)
Q Consensus 81 ~lP~~eAA~~Lgv~~T~L----Kr~CR~~GI 107 (160)
+++.+++|+.|++|..|+ +++.+++|+
T Consensus 174 g~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL~~ 204 (225)
T 3klo_A 174 GASNIEIADKLFVSENTVKTHLHNVFKKINA 204 (225)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 688999999999997765 455666666
No 478
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=36.85 E-value=35 Score=25.82 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=29.3
Q ss_pred HhhHHHHHHHHhhhc----cCCcHHHHHHHHHHHHHHHHHHHHHhc
Q 041600 115 IKSIQRRMSVASGRL----RSNDAEERANAQIEIQRLQEEMAAACA 156 (160)
Q Consensus 115 ikSl~~~i~~L~~~~----~~~~~eerar~~~eIerL~~Em~~~c~ 156 (160)
|+.|+..++.+++.+ ..+|.+--+....||+.|..|+..+.+
T Consensus 12 iq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~ 57 (123)
T 2lf0_A 12 IKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLRE 57 (123)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555554433 235778888899999999999998865
No 479
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=36.81 E-value=29 Score=24.30 Aligned_cols=19 Identities=5% Similarity=0.153 Sum_probs=12.4
Q ss_pred CcHHHHHHHcCCChhHHHH
Q 041600 82 LPIEEAARRMKLCPTVVKK 100 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr 100 (160)
.++.++|++.|||..+|-+
T Consensus 29 ~t~~~IA~~aGvs~~tly~ 47 (190)
T 3jsj_A 29 IGVEALCKAAGVSKRSMYQ 47 (190)
T ss_dssp CCHHHHHHHHTCCHHHHHH
T ss_pred ccHHHHHHHhCCCHHHHHH
Confidence 6666677777776666543
No 480
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=36.73 E-value=18 Score=25.45 Aligned_cols=23 Identities=4% Similarity=0.046 Sum_probs=15.4
Q ss_pred hhcCCcHHHHHHHcCCChhHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKK 100 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr 100 (160)
.|-..++.++|++.|||.++|-+
T Consensus 28 G~~~~s~~~Ia~~agvs~~t~Y~ 50 (203)
T 3b81_A 28 GYENTTLAFIINKLGISKGALYH 50 (203)
T ss_dssp CSTTCCHHHHHHHHTCCHHHHHT
T ss_pred CcccCcHHHHHHHhCCCchhHHH
Confidence 34457777777777777766643
No 481
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=36.73 E-value=19 Score=25.03 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=17.4
Q ss_pred hhcCCcHHHHHHHcCCChhHHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
.|-..++.++|++.|||..++-+.
T Consensus 25 G~~~~t~~~Ia~~agvs~~t~Y~~ 48 (195)
T 3pas_A 25 GFSATSVGKIAKAAGLSPATLYIY 48 (195)
T ss_dssp HHHHCCHHHHHHHHTSCHHHHHHH
T ss_pred ChHhcCHHHHHHHhCCCchHHHHH
Confidence 455678888888888887777543
No 482
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=36.72 E-value=16 Score=25.82 Aligned_cols=24 Identities=13% Similarity=0.023 Sum_probs=18.9
Q ss_pred hhcCCcHHHHHHHcCCChhHHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
.|-..++.++|++.|||..+|-+.
T Consensus 35 G~~~~s~~~IA~~aGvs~~tlY~~ 58 (212)
T 3loc_A 35 GFHGTRLEQIAELAGVSKTNLLYY 58 (212)
T ss_dssp HHHHCCHHHHHHHHTSCHHHHHHH
T ss_pred CcccCCHHHHHHHHCcCHHHHhhh
Confidence 555788999999999998887554
No 483
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=36.68 E-value=16 Score=25.65 Aligned_cols=23 Identities=4% Similarity=-0.049 Sum_probs=18.1
Q ss_pred hhcCCcHHHHHHHcCCChhHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKK 100 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr 100 (160)
.|-.+++.++|++.|||..+|-+
T Consensus 28 G~~~~ti~~IA~~agvs~~t~Y~ 50 (204)
T 3eup_A 28 GLAGTSLTDLTEATNLTKGSIYG 50 (204)
T ss_dssp HHHHCCHHHHHHHHTCCHHHHTT
T ss_pred CcccCCHHHHHHHhCCCcHHHHH
Confidence 55578889999999999777644
No 484
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=36.66 E-value=35 Score=25.10 Aligned_cols=24 Identities=29% Similarity=0.234 Sum_probs=16.8
Q ss_pred hhcCCcHHHHHHHcCCChhHHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
.|-...+.++|++.|||..+|-+.
T Consensus 57 G~~~~t~~~IA~~Agvs~~t~Y~~ 80 (225)
T 2id3_A 57 GFDALDLGEIARRAGVGKTTVYRR 80 (225)
T ss_dssp CGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred CcccCCHHHHHHHHCCCHHHHHHH
Confidence 444678888888888887776443
No 485
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=36.61 E-value=20 Score=26.65 Aligned_cols=26 Identities=15% Similarity=0.210 Sum_probs=19.5
Q ss_pred CcHHHHHHHcCCChhHHHHHHH---HcCC
Q 041600 82 LPIEEAARRMKLCPTVVKKICR---RDGL 107 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~CR---~~GI 107 (160)
+++++.|..||+++.+|-|+-+ +.||
T Consensus 179 ~t~~~iA~~lg~sr~tvsR~l~~L~~~gi 207 (237)
T 3fx3_A 179 YDKMLIAGRLGMKPESLSRAFSRLKAAGV 207 (237)
T ss_dssp SCTHHHHHHTTCCHHHHHHHHHHHGGGTE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCe
Confidence 3489999999999888776654 4455
No 486
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=36.50 E-value=31 Score=25.16 Aligned_cols=24 Identities=13% Similarity=0.068 Sum_probs=18.2
Q ss_pred hhcCCcHHHHHHHcCCChhHHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKKI 101 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr~ 101 (160)
.|-..++.++|++.|||..+|-+.
T Consensus 20 G~~~~s~~~IA~~AGvskgtlY~h 43 (208)
T 2g3b_A 20 GIRGLRVNDVAEVAGVSPGLLYYH 43 (208)
T ss_dssp HHHHCCHHHHHHHHTSCHHHHHHH
T ss_pred CcccCCHHHHHHHhCCCHHHHHHH
Confidence 455688899999999988777443
No 487
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=36.46 E-value=20 Score=25.42 Aligned_cols=42 Identities=14% Similarity=0.060 Sum_probs=26.8
Q ss_pred HHHHHHH-c----CCChhHHHHHHHHcCCCC-ChhHHHhhHHHHHHHH
Q 041600 84 IEEAARR-M----KLCPTVVKKICRRDGLHR-WPHRKIKSIQRRMSVA 125 (160)
Q Consensus 84 ~~eAA~~-L----gv~~T~LKr~CR~~GI~R-WPyRkikSl~~~i~~L 125 (160)
|-+||.+ | |+..+++..||++.||++ ==|+...|.+.++..+
T Consensus 29 Il~aA~~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 76 (212)
T 3nxc_A 29 ILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSL 76 (212)
T ss_dssp HHHHHHHHHHC------CCHHHHHHHTTSCHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHhcCChhhcCHHHHHHHhCCChhHHHHHCCCHHHHHHHH
Confidence 4445443 5 889999999999999977 3377777776665554
No 488
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=36.44 E-value=20 Score=24.87 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=31.7
Q ss_pred HHHHHHHc----CCChhHHHHHHHHcCCCC-ChhHHHhhHHHHHHHH
Q 041600 84 IEEAARRM----KLCPTVVKKICRRDGLHR-WPHRKIKSIQRRMSVA 125 (160)
Q Consensus 84 ~~eAA~~L----gv~~T~LKr~CR~~GI~R-WPyRkikSl~~~i~~L 125 (160)
+-+||.+| |+..+++..||++.||++ =-|+...|.+.++..+
T Consensus 14 Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 60 (195)
T 3ppb_A 14 ILETALQLFVSQGFHGTSTATIAREAGVATGTLFHHFPSKEQLLEQL 60 (195)
T ss_dssp HHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHH
Confidence 34555544 999999999999999977 3388777777666554
No 489
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=36.42 E-value=20 Score=25.69 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=16.2
Q ss_pred hhcCCcHHHHHHHcCCChhHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKK 100 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr 100 (160)
.|-..++.++|++.|||..+|-+
T Consensus 28 G~~~~s~~~IA~~agvs~~t~Y~ 50 (212)
T 2ras_A 28 GGAGLTLSELAARAGISQANLSR 50 (212)
T ss_dssp TSSCCCHHHHHHHHTSCHHHHTT
T ss_pred CcccCcHHHHHHHhCCCHHHHHH
Confidence 44567888888888888776643
No 490
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=36.31 E-value=21 Score=25.33 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=20.1
Q ss_pred hhcCCcHHHHHHHcCCChhHHHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKKIC 102 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr~C 102 (160)
.|-.+++.++|++.|||..+|-+..
T Consensus 24 G~~~~t~~~Ia~~agvs~~t~Y~~F 48 (195)
T 2dg7_A 24 GYDNVTVTDIAERAGLTRRSYFRYF 48 (195)
T ss_dssp CGGGCCHHHHHHHTTCCHHHHHHHC
T ss_pred CccccCHHHHHHHhCCCHHHHHHHc
Confidence 4557899999999999988887654
No 491
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=36.30 E-value=19 Score=25.20 Aligned_cols=23 Identities=13% Similarity=0.014 Sum_probs=15.8
Q ss_pred hhcCCcHHHHHHHcCCChhHHHH
Q 041600 78 IYFHLPIEEAARRMKLCPTVVKK 100 (160)
Q Consensus 78 ~yF~lP~~eAA~~Lgv~~T~LKr 100 (160)
.|-..++.++|++.|||..+|-+
T Consensus 24 G~~~~t~~~IA~~agvs~~t~Y~ 46 (199)
T 3qbm_A 24 GYAGTAISDIMAATGLEKGGIYR 46 (199)
T ss_dssp CSTTCCHHHHHHHHTCCHHHHHT
T ss_pred CcCcCCHHHHHHHhCCCccHHHH
Confidence 44467777788888887766643
No 492
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=36.26 E-value=17 Score=26.26 Aligned_cols=42 Identities=14% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHc----CCChhHHHHHHHHcCCCC-ChhHHHhhHHHHHHHH
Q 041600 84 IEEAARRM----KLCPTVVKKICRRDGLHR-WPHRKIKSIQRRMSVA 125 (160)
Q Consensus 84 ~~eAA~~L----gv~~T~LKr~CR~~GI~R-WPyRkikSl~~~i~~L 125 (160)
|-+||.+| |..-|++..||++.||++ --|+..+|.+.++..+
T Consensus 19 Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~tlY~yF~sKe~L~~a~ 65 (199)
T 3crj_A 19 IMQATYRALREHGYADLTIQRIADEYGKSTAAVHYYYDTKDDLLAAF 65 (199)
T ss_dssp HHHHHHHHHHHHTTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccCCHHHHHHHhCCChhHHhhhcCCHHHHHHHH
No 493
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=36.25 E-value=14 Score=26.26 Aligned_cols=30 Identities=23% Similarity=0.208 Sum_probs=22.2
Q ss_pred HcCCChhHHHHHHHHcCCCC-ChhHHHhhHH
Q 041600 90 RMKLCPTVVKKICRRDGLHR-WPHRKIKSIQ 119 (160)
Q Consensus 90 ~Lgv~~T~LKr~CR~~GI~R-WPyRkikSl~ 119 (160)
+-|+..+++..||++.||++ =-|+...|.+
T Consensus 22 ~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 52 (195)
T 2dg7_A 22 EHGYDNVTVTDIAERAGLTRRSYFRYFPDKR 52 (195)
T ss_dssp HSCGGGCCHHHHHHHTTCCHHHHHHHCSSTT
T ss_pred hcCccccCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 34999999999999999977 2255554443
No 494
>3doa_A Fibrinogen binding protein; structural genomics, MCSG., protein structure initiative, midwest center for structural genomics; 2.81A {Staphylococcus aureus subsp}
Probab=36.22 E-value=71 Score=26.24 Aligned_cols=56 Identities=13% Similarity=0.210 Sum_probs=37.5
Q ss_pred CCCCHHHHHhhcC----CcHHHHHHHc-CCChhHHHHH-HHHcCCCCChhHHHhhHHHHHHHHh
Q 041600 69 GKLTLRDLMIYFH----LPIEEAARRM-KLCPTVVKKI-CRRDGLHRWPHRKIKSIQRRMSVAS 126 (160)
Q Consensus 69 ~~lt~~~L~~yF~----lP~~eAA~~L-gv~~T~LKr~-CR~~GI~RWPyRkikSl~~~i~~L~ 126 (160)
.+++.+++...+. -..+..++.+ |+|+...+-+ |++.|+. +.+-..++...++.+.
T Consensus 172 ~~~~~e~~~~~l~~~~~~l~~~l~~~~~G~s~~la~El~~~ra~~~--~~~l~~~~~~~~~~~~ 233 (288)
T 3doa_A 172 YDITGAEVLKYIDFNAGNIAKQLLNQFEGFSPLITNEIVSRRQFMT--SSTLPEAFDEVMAETK 233 (288)
T ss_dssp GGCCHHHHGGGCCGGGCCHHHHHHHHBTTCCHHHHHHHHTTSSSCS--TTHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHhhCcchHHHHHHHHcCCCCHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHhh
Confidence 3577888877763 2234557888 9999999999 9999963 2233345555555543
No 495
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=36.08 E-value=61 Score=22.38 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=30.3
Q ss_pred HHhhHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHHHh
Q 041600 114 KIKSIQRRMSVASGRLRSNDAEERANAQIEIQRLQEEMAAAC 155 (160)
Q Consensus 114 kikSl~~~i~~L~~~~~~~~~eerar~~~eIerL~~Em~~~c 155 (160)
+..++..-+..|+..++. .--.|...+++|+.|++|+..+.
T Consensus 43 ~R~~~E~d~~~LrkdvD~-a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 43 QREEAENTLQSFRQDVDN-ASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHHTTHHH-HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777776653 23457788899999999998775
No 496
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=36.05 E-value=23 Score=26.76 Aligned_cols=23 Identities=9% Similarity=0.223 Sum_probs=20.1
Q ss_pred CcHHHHHHHcCCChhHHHHHHHH
Q 041600 82 LPIEEAARRMKLCPTVVKKICRR 104 (160)
Q Consensus 82 lP~~eAA~~Lgv~~T~LKr~CR~ 104 (160)
++.++.|+.+||++..|.++..+
T Consensus 45 ~s~~eIA~~~~i~~~~l~kil~~ 67 (159)
T 3lwf_A 45 ISLRSIAQDKNLSEHYLEQLIGP 67 (159)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHH
Confidence 78899999999999999988764
No 497
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=36.01 E-value=7.6 Score=28.02 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=0.0
Q ss_pred cCCcHHHHHHHcCCChhHHHHHHHHc
Q 041600 80 FHLPIEEAARRMKLCPTVVKKICRRD 105 (160)
Q Consensus 80 F~lP~~eAA~~Lgv~~T~LKr~CR~~ 105 (160)
..+|+++.|.-||+++.+|-|+-+++
T Consensus 167 ~~~t~~~iA~~lG~sretlsR~l~~l 192 (194)
T 3dn7_A 167 QRVPQYLLASYLGFTPEYLSEIRKKY 192 (194)
T ss_dssp --------------------------
T ss_pred HHCCHHHHHHHhCCCHHHHHHHHHhh
Confidence 35789999999999999999886554
No 498
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=35.94 E-value=26 Score=24.87 Aligned_cols=42 Identities=17% Similarity=0.044 Sum_probs=31.7
Q ss_pred HHHHHHHc----CCChhHHHHHHHHcCCCC-ChhHHHhhHHHHHHHH
Q 041600 84 IEEAARRM----KLCPTVVKKICRRDGLHR-WPHRKIKSIQRRMSVA 125 (160)
Q Consensus 84 ~~eAA~~L----gv~~T~LKr~CR~~GI~R-WPyRkikSl~~~i~~L 125 (160)
|-+||.+| |...+++..||++.||++ ==|+...|.+.++..+
T Consensus 23 Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 69 (212)
T 1pb6_A 23 ILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAV 69 (212)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHSSSHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchhhHHHHHHHHCCChhHHHHhCCCHHHHHHHH
Confidence 44555544 999999999999999977 4478777777666554
No 499
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=35.88 E-value=34 Score=24.49 Aligned_cols=22 Identities=14% Similarity=-0.103 Sum_probs=13.7
Q ss_pred hcCCcHHHHHHHcCCChhHHHH
Q 041600 79 YFHLPIEEAARRMKLCPTVVKK 100 (160)
Q Consensus 79 yF~lP~~eAA~~Lgv~~T~LKr 100 (160)
|-..++.++|++.|||..+|-+
T Consensus 25 ~~~ts~~~IA~~aGvs~gtlY~ 46 (197)
T 2gen_A 25 VDATTIEMIRDRSGASIGSLYH 46 (197)
T ss_dssp TTTCCHHHHHHHHCCCHHHHHH
T ss_pred cccCCHHHHHHHHCCChHHHHH
Confidence 4456667777777777666543
No 500
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=35.86 E-value=20 Score=25.05 Aligned_cols=42 Identities=14% Similarity=0.140 Sum_probs=30.4
Q ss_pred HHHHHHHc----CCChhHHHHHHHHcCCCC-ChhHHHhhHHHHHHHH
Q 041600 84 IEEAARRM----KLCPTVVKKICRRDGLHR-WPHRKIKSIQRRMSVA 125 (160)
Q Consensus 84 ~~eAA~~L----gv~~T~LKr~CR~~GI~R-WPyRkikSl~~~i~~L 125 (160)
+-+||.+| |+..+++..||++.||++ --|+...|.+..+..+
T Consensus 16 il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 62 (196)
T 3he0_A 16 ILAAAEQLIAESGFQGLSMQKLANEAGVAAGTIYRYFSDKEHLLEEV 62 (196)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCHHHHHHHhCCCcchHHHhcCCHHHHHHHH
Confidence 34555444 999999999999999977 4477777766655443
Done!