Query 041601
Match_columns 854
No_of_seqs 297 out of 1056
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:52:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041601.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041601hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2184 Tuftelin-interacting p 100.0 3E-133 6E-138 1152.2 49.9 633 190-848 108-763 (767)
2 PF07842 GCFC: GC-rich sequenc 100.0 2.2E-53 4.9E-58 459.3 22.2 260 411-671 1-276 (276)
3 PF12457 TIP_N: Tuftelin inter 99.9 9.9E-24 2.1E-28 196.0 4.9 79 2-88 2-89 (109)
4 KOG2184 Tuftelin-interacting p 99.7 2.4E-17 5.1E-22 192.6 15.3 225 435-676 420-659 (767)
5 PF07842 GCFC: GC-rich sequenc 99.6 6.6E-16 1.4E-20 167.5 12.1 179 433-627 80-271 (276)
6 PF01585 G-patch: G-patch doma 99.3 2.8E-12 6E-17 100.8 4.7 43 196-238 2-44 (45)
7 smart00443 G_patch glycine ric 99.1 7.7E-11 1.7E-15 93.6 4.5 43 196-238 4-46 (47)
8 KOG2185 Predicted RNA-processi 98.8 2.6E-08 5.6E-13 108.7 9.9 49 189-237 288-338 (486)
9 PF12656 G-patch_2: DExH-box s 98.4 1.6E-07 3.4E-12 82.4 3.8 45 196-240 30-74 (77)
10 KOG2809 Telomerase elongation 98.4 2.8E-07 6E-12 99.8 4.8 50 191-240 19-70 (326)
11 KOG0965 Predicted RNA-binding 98.2 6.1E-07 1.3E-11 104.1 3.5 47 193-239 903-950 (988)
12 KOG3673 FtsJ-like RNA methyltr 98.2 7E-07 1.5E-11 100.6 2.5 45 196-240 83-127 (845)
13 KOG1996 mRNA splicing factor [ 98.0 3.4E-06 7.4E-11 89.0 3.4 48 197-244 213-261 (378)
14 KOG2384 Major histocompatibili 97.7 1.2E-05 2.6E-10 80.8 1.7 45 195-239 127-171 (223)
15 KOG4315 G-patch nucleic acid b 97.1 0.00038 8.1E-09 77.4 3.6 50 190-240 145-197 (455)
16 KOG1994 Predicted RNA binding 96.7 0.00064 1.4E-08 69.8 1.1 44 196-239 81-127 (268)
17 KOG0154 RNA-binding protein RB 96.4 0.0015 3.2E-08 78.5 2.1 44 196-239 512-555 (573)
18 KOG2138 Predicted RNA binding 93.3 0.089 1.9E-06 62.2 4.7 20 196-215 148-167 (883)
19 KOG4368 Predicted RNA binding 93.1 0.051 1.1E-06 62.9 2.2 33 194-227 685-717 (757)
20 KOG1994 Predicted RNA binding 83.5 0.46 9.9E-06 49.5 0.8 42 197-238 39-80 (268)
21 PRK14139 heat shock protein Gr 80.2 18 0.00039 37.4 10.9 89 349-437 38-132 (185)
22 KOG3647 Predicted coiled-coil 78.4 32 0.0007 37.2 12.3 73 347-425 109-181 (338)
23 PRK14161 heat shock protein Gr 77.6 34 0.00074 35.2 12.0 97 341-437 17-123 (178)
24 PF12325 TMF_TATA_bd: TATA ele 77.6 39 0.00084 32.5 11.6 58 344-401 17-74 (120)
25 PF10158 LOH1CR12: Tumour supp 73.8 60 0.0013 31.7 12.1 89 336-431 35-123 (131)
26 KOG0996 Structural maintenance 70.0 36 0.00079 43.7 11.7 90 336-425 782-874 (1293)
27 PF10234 Cluap1: Clusterin-ass 67.3 70 0.0015 35.0 12.0 52 350-401 169-220 (267)
28 PRK14147 heat shock protein Gr 66.0 65 0.0014 33.0 10.9 86 352-437 27-118 (172)
29 PRK14154 heat shock protein Gr 65.2 76 0.0016 33.5 11.4 89 349-437 58-155 (208)
30 PRK14140 heat shock protein Gr 64.0 1.2E+02 0.0027 31.5 12.6 92 345-436 39-138 (191)
31 PRK14158 heat shock protein Gr 63.5 77 0.0017 33.1 11.0 90 348-437 45-141 (194)
32 PRK14155 heat shock protein Gr 60.2 73 0.0016 33.6 10.3 87 351-437 21-118 (208)
33 PF07851 TMPIT: TMPIT-like pro 60.0 1.1E+02 0.0024 34.5 12.2 34 422-455 116-149 (330)
34 PRK14162 heat shock protein Gr 58.9 1.4E+02 0.0031 31.1 12.1 87 351-437 47-141 (194)
35 PRK14160 heat shock protein Gr 56.1 1.8E+02 0.0038 30.9 12.3 92 345-437 63-160 (211)
36 PRK14156 heat shock protein Gr 55.9 98 0.0021 31.9 10.1 86 351-437 35-126 (177)
37 PRK14141 heat shock protein Gr 55.2 1.2E+02 0.0025 32.1 10.8 87 351-437 39-139 (209)
38 PRK14151 heat shock protein Gr 55.2 1.7E+02 0.0037 30.0 11.8 87 351-437 28-123 (176)
39 PRK04406 hypothetical protein; 54.3 68 0.0015 28.3 7.5 45 353-397 7-51 (75)
40 PRK14163 heat shock protein Gr 54.1 1.2E+02 0.0025 32.2 10.6 84 348-436 45-134 (214)
41 PRK14148 heat shock protein Gr 53.1 2.1E+02 0.0045 30.0 12.1 93 345-437 42-142 (195)
42 PF02520 DUF148: Domain of unk 51.1 1.1E+02 0.0024 28.6 9.1 43 385-430 58-100 (113)
43 PF04799 Fzo_mitofusin: fzo-li 50.5 88 0.0019 32.0 8.6 28 375-402 124-151 (171)
44 PRK14145 heat shock protein Gr 48.8 2.4E+02 0.0052 29.5 11.8 88 349-437 51-144 (196)
45 PRK14153 heat shock protein Gr 47.1 2.1E+02 0.0045 30.0 11.0 92 346-437 36-135 (194)
46 PRK14143 heat shock protein Gr 46.8 2.3E+02 0.005 30.6 11.6 92 346-437 70-170 (238)
47 PF10234 Cluap1: Clusterin-ass 46.4 2.6E+02 0.0056 30.7 12.0 71 331-401 157-231 (267)
48 PF06156 DUF972: Protein of un 43.5 1.5E+02 0.0033 27.9 8.6 53 340-392 5-57 (107)
49 PF02403 Seryl_tRNA_N: Seryl-t 43.0 30 0.00066 32.1 3.9 35 351-385 30-64 (108)
50 PRK14144 heat shock protein Gr 41.8 3.5E+02 0.0076 28.4 11.7 87 351-437 53-146 (199)
51 PF08317 Spc7: Spc7 kinetochor 41.6 2.3E+02 0.0049 31.9 11.2 49 350-398 216-264 (325)
52 PF01025 GrpE: GrpE; InterPro 39.5 1.9E+02 0.004 28.8 9.2 26 412-437 88-113 (165)
53 PF07028 DUF1319: Protein of u 39.0 3.8E+02 0.0082 26.1 11.6 16 333-348 18-33 (126)
54 PF05377 FlaC_arch: Flagella a 38.9 2.1E+02 0.0046 23.8 7.6 40 359-398 9-48 (55)
55 PRK14146 heat shock protein Gr 38.6 3.2E+02 0.0069 29.1 11.0 86 352-437 63-156 (215)
56 PRK14157 heat shock protein Gr 37.8 1.6E+02 0.0035 31.5 8.7 39 351-389 85-123 (227)
57 KOG2391 Vacuolar sorting prote 37.4 5.6E+02 0.012 29.1 12.9 50 349-398 224-273 (365)
58 PF12777 MT: Microtubule-bindi 37.2 2.4E+02 0.0051 32.0 10.6 48 347-394 239-286 (344)
59 PF12325 TMF_TATA_bd: TATA ele 36.3 4E+02 0.0087 25.7 12.9 67 335-401 15-81 (120)
60 PF06160 EzrA: Septation ring 36.3 1.3E+02 0.0027 36.6 8.7 49 348-396 99-147 (560)
61 PRK14159 heat shock protein Gr 36.0 3.5E+02 0.0076 27.8 10.5 86 352-437 32-125 (176)
62 PRK14149 heat shock protein Gr 35.9 4.5E+02 0.0098 27.4 11.4 79 359-437 52-138 (191)
63 COG1579 Zn-ribbon protein, pos 35.5 3.3E+02 0.0073 29.4 10.7 58 340-397 28-85 (239)
64 PRK04778 septation ring format 35.5 2.3E+02 0.0049 34.5 10.7 51 348-398 103-153 (569)
65 PF10473 CENP-F_leu_zip: Leuci 35.2 3.1E+02 0.0066 27.2 9.6 56 340-395 49-104 (140)
66 COG2433 Uncharacterized conser 34.9 2.5E+02 0.0055 34.1 10.4 20 411-430 476-495 (652)
67 PRK04863 mukB cell division pr 34.5 4E+02 0.0086 36.4 13.3 72 346-417 372-443 (1486)
68 PF05615 THOC7: Tho complex su 34.5 3.3E+02 0.0071 26.5 9.8 18 338-355 48-65 (139)
69 PF12718 Tropomyosin_1: Tropom 34.4 3.1E+02 0.0068 27.1 9.6 6 347-352 18-23 (143)
70 PF11932 DUF3450: Protein of u 34.1 4.9E+02 0.011 27.9 12.0 9 466-474 133-141 (251)
71 cd07618 BAR_Rich1 The Bin/Amph 33.2 3.3E+02 0.0072 29.6 10.3 29 433-463 213-241 (246)
72 PF05384 DegS: Sensor protein 33.2 2.2E+02 0.0047 28.9 8.4 53 348-400 75-127 (159)
73 PRK02119 hypothetical protein; 32.3 2.2E+02 0.0048 24.9 7.3 37 361-397 13-49 (73)
74 PRK09039 hypothetical protein; 32.2 4.2E+02 0.009 30.1 11.5 43 356-398 122-164 (343)
75 PF02090 SPAM: Salmonella surf 32.1 5.2E+02 0.011 25.7 10.5 55 337-398 3-57 (147)
76 PF12718 Tropomyosin_1: Tropom 31.7 4.7E+02 0.01 25.9 10.4 47 345-391 23-69 (143)
77 PF04102 SlyX: SlyX; InterPro 30.7 3E+02 0.0065 23.7 7.8 34 365-398 12-45 (69)
78 PLN02678 seryl-tRNA synthetase 30.0 89 0.0019 36.8 5.8 32 351-382 34-65 (448)
79 PF15011 CK2S: Casein Kinase 2 29.7 4.2E+02 0.0091 27.0 9.9 24 407-430 121-144 (168)
80 PRK14150 heat shock protein Gr 29.4 6.7E+02 0.015 26.1 11.9 75 363-437 58-141 (193)
81 PF14193 DUF4315: Domain of un 29.3 4.3E+02 0.0093 23.9 9.2 60 352-423 3-62 (83)
82 PF06637 PV-1: PV-1 protein (P 29.3 3.9E+02 0.0085 30.7 10.1 23 369-391 354-376 (442)
83 PRK09039 hypothetical protein; 29.0 2.6E+02 0.0056 31.7 9.2 55 340-394 127-181 (343)
84 smart00787 Spc7 Spc7 kinetocho 28.9 5.6E+02 0.012 28.8 11.6 46 354-399 215-260 (312)
85 PF04102 SlyX: SlyX; InterPro 28.8 3.1E+02 0.0066 23.6 7.5 50 349-398 3-52 (69)
86 PRK14164 heat shock protein Gr 28.8 4.1E+02 0.0089 28.3 9.9 48 354-401 81-134 (218)
87 PRK10884 SH3 domain-containing 28.4 3.8E+02 0.0082 28.3 9.6 37 411-447 155-195 (206)
88 PRK11637 AmiB activator; Provi 28.0 3.3E+02 0.0072 31.7 10.1 7 792-798 330-336 (428)
89 PF11559 ADIP: Afadin- and alp 27.9 5.9E+02 0.013 25.0 11.8 16 414-429 120-135 (151)
90 TIGR00998 8a0101 efflux pump m 27.4 6.3E+02 0.014 27.9 11.9 59 343-401 80-138 (334)
91 PF09727 CortBP2: Cortactin-bi 26.9 3.2E+02 0.0069 28.6 8.4 40 345-384 136-175 (192)
92 TIGR03185 DNA_S_dndD DNA sulfu 26.7 8.5E+02 0.018 30.0 13.8 11 349-359 404-414 (650)
93 TIGR02894 DNA_bind_RsfA transc 26.4 4.9E+02 0.011 26.4 9.3 49 352-400 106-154 (161)
94 PF13851 GAS: Growth-arrest sp 26.3 4.6E+02 0.01 27.4 9.8 16 367-382 65-80 (201)
95 PRK10884 SH3 domain-containing 26.2 7.9E+02 0.017 25.9 13.9 23 369-391 137-159 (206)
96 PRK11637 AmiB activator; Provi 26.0 3.5E+02 0.0075 31.5 9.8 8 825-832 362-369 (428)
97 TIGR00414 serS seryl-tRNA synt 25.9 1.2E+02 0.0025 35.5 5.8 33 350-382 30-62 (418)
98 KOG3123 Diphthine synthase [Tr 25.8 63 0.0014 34.0 3.1 59 779-848 90-155 (272)
99 PF11559 ADIP: Afadin- and alp 25.7 5E+02 0.011 25.5 9.6 25 369-393 99-123 (151)
100 PF04728 LPP: Lipoprotein leuc 25.7 4E+02 0.0087 22.3 7.8 41 348-388 8-48 (56)
101 PF10267 Tmemb_cc2: Predicted 25.7 9.3E+02 0.02 28.1 12.8 23 348-370 242-264 (395)
102 PF07200 Mod_r: Modifier of ru 25.6 5.3E+02 0.011 25.2 9.7 21 406-426 121-141 (150)
103 COG4942 Membrane-bound metallo 25.4 8.8E+02 0.019 28.5 12.4 71 345-425 40-110 (420)
104 PRK10963 hypothetical protein; 25.1 4.4E+02 0.0095 27.9 9.5 58 357-422 44-101 (223)
105 smart00787 Spc7 Spc7 kinetocho 25.1 6.5E+02 0.014 28.3 11.2 35 360-394 207-241 (312)
106 COG0576 GrpE Molecular chapero 24.8 5.6E+02 0.012 26.7 10.0 88 351-439 44-141 (193)
107 TIGR02449 conserved hypothetic 24.8 4.6E+02 0.0099 22.7 8.8 50 337-390 5-54 (65)
108 PF13094 CENP-Q: CENP-Q, a CEN 24.5 4.3E+02 0.0092 26.3 8.9 54 345-398 22-75 (160)
109 PF02183 HALZ: Homeobox associ 24.5 2.9E+02 0.0064 21.9 6.0 36 349-384 4-39 (45)
110 KOG4643 Uncharacterized coiled 24.4 4.6E+02 0.01 33.8 10.5 94 340-433 412-526 (1195)
111 PRK10325 heat shock protein Gr 24.2 6.1E+02 0.013 26.5 10.1 75 363-437 59-142 (197)
112 COG1579 Zn-ribbon protein, pos 24.1 5.9E+02 0.013 27.6 10.1 50 340-389 56-114 (239)
113 PRK05431 seryl-tRNA synthetase 23.9 1.3E+02 0.0029 35.1 5.8 32 351-382 29-60 (425)
114 PF02609 Exonuc_VII_S: Exonucl 23.6 1.6E+02 0.0035 23.9 4.6 29 385-420 3-31 (53)
115 PF15188 CCDC-167: Coiled-coil 23.6 3E+02 0.0065 25.0 6.6 50 341-390 10-62 (85)
116 COG4694 Uncharacterized protei 23.1 2.5E+02 0.0055 33.8 7.6 49 345-394 434-482 (758)
117 PRK14066 exodeoxyribonuclease 23.1 1.5E+02 0.0033 26.2 4.6 29 385-420 8-36 (75)
118 PF10146 zf-C4H2: Zinc finger- 22.8 6.1E+02 0.013 27.2 10.0 36 362-397 37-72 (230)
119 COG4026 Uncharacterized protei 22.6 9.3E+02 0.02 25.8 10.8 25 362-386 140-164 (290)
120 COG2433 Uncharacterized conser 22.6 4.6E+02 0.01 32.0 9.7 17 410-426 496-512 (652)
121 PF15397 DUF4618: Domain of un 22.5 8.4E+02 0.018 26.7 11.0 43 345-390 65-107 (258)
122 PRK00846 hypothetical protein; 22.4 5.6E+02 0.012 22.8 9.0 48 345-392 8-55 (77)
123 PRK14064 exodeoxyribonuclease 22.1 1.6E+02 0.0035 26.0 4.6 29 385-420 10-38 (75)
124 PF10805 DUF2730: Protein of u 22.0 5.2E+02 0.011 24.1 8.3 29 364-392 65-93 (106)
125 PF05531 NPV_P10: Nucleopolyhe 22.0 4.9E+02 0.011 23.1 7.4 51 348-398 9-62 (75)
126 PRK02793 phi X174 lysis protei 21.5 4.9E+02 0.011 22.7 7.4 46 352-397 3-48 (72)
127 PF08826 DMPK_coil: DMPK coile 21.5 4.4E+02 0.0096 22.4 6.8 42 345-386 20-61 (61)
128 COG0172 SerS Seryl-tRNA synthe 21.3 3E+02 0.0065 32.3 7.8 78 349-426 28-106 (429)
129 TIGR01280 xseB exodeoxyribonuc 21.3 1.8E+02 0.0038 25.1 4.6 29 385-420 5-33 (67)
130 PRK04325 hypothetical protein; 21.1 4.9E+02 0.011 22.8 7.4 45 353-397 5-49 (74)
131 PF07217 Het-C: Heterokaryon i 21.0 9.7E+02 0.021 29.3 11.9 77 513-594 461-542 (606)
132 PF07889 DUF1664: Protein of u 20.6 7.9E+02 0.017 24.0 9.3 8 332-339 28-35 (126)
133 COG1570 XseA Exonuclease VII, 20.5 4.3E+02 0.0094 31.1 8.8 74 301-374 225-300 (440)
134 PRK04778 septation ring format 20.5 3.9E+02 0.0085 32.5 9.1 95 334-429 439-533 (569)
135 PRK14142 heat shock protein Gr 20.1 3.6E+02 0.0078 28.8 7.5 17 421-437 113-129 (223)
136 KOG0976 Rho/Rac1-interacting s 20.0 9E+02 0.019 30.6 11.4 59 335-393 350-408 (1265)
137 PF10146 zf-C4H2: Zinc finger- 20.0 1.1E+03 0.024 25.3 11.8 42 350-391 18-59 (230)
No 1
>KOG2184 consensus Tuftelin-interacting protein TIP39, contains G-patch domain [RNA processing and modification]
Probab=100.00 E-value=2.7e-133 Score=1152.17 Aligned_cols=633 Identities=46% Similarity=0.795 Sum_probs=561.6
Q ss_pred cccCCC--CcHHHHHHHHcCCCCCCCCCCCCCCcccceeeeecCCCcccc-ccccchhhhhccCCcccccccc--ccCCC
Q 041601 190 GGDIGV--GNVVMKMMEKMGWYKGRGLGKDEQGITAPIEARLRPKNMGMG-YNDFKETEAAKLPGLEKLEDKK--TVGQQ 264 (854)
Q Consensus 190 ~~~~~~--~~~g~kml~kmG~~~G~gLG~~~qGi~~pi~~~~~~~~~glg-~~~~~E~~~~~~~~~~~~~~~~--~~~~~ 264 (854)
+|.|+. +|||+|||+||||++|+||||++|||++||++++||+++|+| |+.+.|++ .-+.++..++.+ .+...
T Consensus 108 ~~~~e~~t~gig~Kll~kMGYkpG~GLGkn~qGIv~Pieaq~Rp~rgg~Gay~~e~~~s--s~~~~~~~~~~e~~~~~s~ 185 (767)
T KOG2184|consen 108 FGDFEKGTKGIGAKLLEKMGYKPGKGLGKNAQGIVAPIEAQLRPGRGGLGAYGFETEAS--SHKDLEKVDSSEDTVSVSV 185 (767)
T ss_pred hhhhhhcccchhHHHHHHcCCccccccCccccccccHHhcccCccCccccccccccccc--cccchhhhhcccccccccc
Confidence 678887 899999999999999999999999999999999999999999 55433332 222223222211 11111
Q ss_pred Ccccchhhhhhhh----cccCCcccccCHHHHHHhhhcc-----ccceEEecCCCcceeecccccchhhhhhccCCCC-C
Q 041601 265 QPKGRNKERLWSK----LKVKKKEEYITAEELLENKREQ-----VVQKVIDMRGPQVRVLTNLENLDAEEKARENDVP-M 334 (854)
Q Consensus 265 ~~~~~~~~~~WkK----~~~k~k~~y~T~ee~~~~~~~~-----~~~~IIDmtG~~~rvls~~~~l~~~~~~~~~~~~-~ 334 (854)
++++.+....|+| +++..|+.|+|+|||++++..+ ...+|||||||+++|+++|+++.....++.++++ +
T Consensus 186 se~~~~~~~~~~~~~~~kk~~~k~~y~t~eEl~~~g~~~~~~~~~~~~vid~~g~~~~vvs~~~~~~~~~~~~~d~v~~~ 265 (767)
T KOG2184|consen 186 SEDKEKHGSKGRKGSEKKKKGVKTSYRTVEELMAKGLKQESKFLSGVKVIDMTGPEKRVVSGYESLLEEEKASDDGVPQR 265 (767)
T ss_pred chhhhhcccccccChhhccCccchhhccHHHHHhccccchhhhccCceeeccCCcceeeehhhhcchhhhcCCccccccc
Confidence 2222333344554 3567789999999999997443 4559999999999999999999988777777777 9
Q ss_pred hhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcccHHHH
Q 041601 335 PELQHNVRLIVDLAEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVLGQIEKGHTLGTLTLVSL 414 (854)
Q Consensus 335 pEL~hNl~llv~~~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v~~~~~~~~~~~~tl~~~ 414 (854)
|||+||++++|+.+|+.|++++++++.+++....|+++.+.++..++.++.+++.+..+.+.|+.++...+...+||++|
T Consensus 266 pel~hnl~~~v~~~E~~i~~~~~~lr~e~~~~~~le~~~e~~~~~~~~~~~~~~~l~~~~e~v~~~e~~~~~~~~tld~~ 345 (767)
T KOG2184|consen 266 PELQHNLQLLVSLQESQIRRSDRQLRIERDQALNLEKEIEKLEEELDLEKTHEQSLRKVEESVDEAELDVSSKRLTLDEL 345 (767)
T ss_pred cchhhhhHHHhhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhccCCccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998777777999999
Q ss_pred HHHHHHHHHhhHHHHhhCChHHHHHHHhhhHHHHhhcCCCCCCCCchhHHHHHHhHhhhcCCCCCcccccCChHHHHHHH
Q 041601 415 ANYFSDLHKRFANDYKLCNLASIACSFALPLFIRMFQGWDPLQNPSHKMEVVLMWKNVLQTDDSQDIWDLSTPYSQLISE 494 (854)
Q Consensus 415 ~~~f~~L~~~~~~ey~~~~L~~la~~~v~Pll~~~~~~WdPL~dP~~~~~~i~~Wk~lL~~~~~~~~~~~~~~y~~Ll~~ 494 (854)
...|+.|+.+||++|.+|+|.++|+++++|++.+.|..|+||.+|.++++.+.+||.+|+..+...+.+..++|++++|.
T Consensus 346 ~~~fe~L~~eY~~~~~~~~l~~~a~~i~~pL~~~~~~~Wdpl~d~~~g~e~i~~wk~lL~~~~~~~~~~~~~~~~~li~e 425 (767)
T KOG2184|consen 346 AILFELLRMEYPEEYTLKSLSSIAVSIVLPLLKRYLKFWDPLEDPYSGLESISKWKALLEQSDDLRKRDEIDPYSSLIWE 425 (767)
T ss_pred HHHHHHhhhhccccccccccccchhhhhhHHHHHHhhccCcccCccchhHHHHHHHhhhhhhccchhhccccccceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999987655545678899999999
Q ss_pred hhHHHHHHhhhCCCCCCChhHHHHHHHHhhhhcchhHHHHhhhhhhHHHHHHhhhccCCCCCCCCcchhhhcchhhhhhh
Q 041601 495 VVLPAVRIAGINTWDPRDPEQMLRFLESWEKLLPSSVLHTILDTVVLPKLTSAVDSWDPRRETVPIHVWVHPWLPLLGHK 574 (854)
Q Consensus 495 ~~lP~ir~av~~~Wdp~dp~p~l~~l~~W~plLP~~i~~~ileqlIlPKL~~aV~~W~P~~~~~p~h~wL~PWlp~L~~~ 574 (854)
.|||++|.+..+.|.|+|+.||+.||+.|.++||.||.++|++++|+|||..+|++|+|+++++|+|+|||||+|+++.+
T Consensus 426 ~~~p~vr~~~l~~w~~~d~~~m~~lle~W~~~lp~~VldnIl~~~v~pkl~~~v~~W~p~~d~~~i~swi~pwl~il~~r 505 (767)
T KOG2184|consen 426 GVMPKVRKAELATWEPRDMLPMLSLLEAWVPLLPSWVLDNILDQLVLPKLSAAVSQWDPLTDTVPIHSWIHPWLPILGQR 505 (767)
T ss_pred eecHHHHHHHHhccCccchhHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhcccccceeeecchHHHhhh
Confidence 99999999444579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccCCCCchhhhhccchhhhcChhhHHHHHHhccCcc-------ceeCCCCCchhhHhhhhccc
Q 041601 575 LEGLYQMIRMKLSNVLDAWHPSDASAYTILSPWKTVFDSASWEQLMRRYIVPK-------FQINPLEQKLDQFNWVMPWA 647 (854)
Q Consensus 575 l~~L~~~Ir~KL~~~L~~W~p~d~sa~~~L~pWk~vf~~~~~~~ll~k~ilPK-------f~inP~~Q~le~~~~v~~W~ 647 (854)
++.||+.|+.||+.+|..|+|+|.+++++|.|||.||++.+|..|+.++|+|| +.|||.+|+++.|.|||.|+
T Consensus 506 ~~~l~~~i~~Kls~~l~~W~p~d~sa~~~l~pWK~~f~~~~~~~~~~~~ivpkl~~~l~e~~inp~~q~l~~~~~v~~w~ 585 (767)
T KOG2184|consen 506 LESLYPSIRSKLSIALDAWHPSDRSAIAILSPWKTVFDAASWKEFMRRYIVPKLQLALDELQINPMNQDLERFTWVMEWK 585 (767)
T ss_pred HHHhhhHHHHHHHHHhhcCCCcccCchhhhccchhccchhhHHHHHhhcccccHHHHhhhhccCccccchhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999 56999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhChHHHhhhhhHHHHHHHHHHHHHHHHcCCCCCC
Q 041601 648 SAVPTHLMVDLMERFFFTKWLHVLYHWLNTAPDFEEIHRWYLGWKGLIPEELLANQNIRAQLNVGLDMMSQAAEGGIVVQ 727 (854)
Q Consensus 648 ~~i~~~~m~~lL~~~fFpkWl~~L~~WL~~~~~~~eV~~WY~~Wk~~fp~el~~~~~Ik~~f~~aL~mmn~a~~~~~l~~ 727 (854)
++|++++|++++++||||||+++||+||++.|+|.||..||.|||++||..+++++.|+..|++||+||++|++...+.+
T Consensus 586 ~~i~~~~~~~l~~~hffpkwl~~l~~WL~n~p~~~Ei~~wy~gwK~~~~~~ll~~~~v~~~~k~~ld~~~r~~~~~~l~~ 665 (767)
T KOG2184|consen 586 GLIDPHLMAQLLERHFFPKWLNVLYHWLSNSPDYDEISRWYTGWKSMFPQELLANPYVKDKFKRGLDMMNRAVERLELGQ 665 (767)
T ss_pred cccCHHHHHHHHHHhhhHHHHHHHHHHhcCCCchHHHHHHHHhHHHhccHhhhcCchhhhhhhhhHHHHHHhhcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999877777
Q ss_pred CCccchhhhHHHHhhhhHHHHHHHHHHHHHHHHHhccCCCcccCCCC-CCccccHHHHHHHHHHHcCCeeeeCCCCccCC
Q 041601 728 PGTVENISYLKAREQRQFEAQQKAAAQAQQAAAAAAGLGSATQMNGM-DGRQMTLKEVIEAYAQQHELLFKPKPGRMHNG 806 (854)
Q Consensus 728 P~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~~~~~sFKdvVE~~c~e~gllf~P~~gr~~~G 806 (854)
|.+.+++. +. + ..+.++++.++. ....+||||+||.+|+++||+|.|+++|+|+|
T Consensus 666 p~a~d~~~-----~~--------~-----------~~~~~a~~~~~~~~~s~lsfKe~vE~~a~e~g~l~~p~~~r~~~G 721 (767)
T KOG2184|consen 666 PFAIDNIQ-----PS--------P-----------QSPNMAVAKIQLSSSSVLSFKELVENFAAENGLLFKPLPGRLHNG 721 (767)
T ss_pred CccccccC-----CC--------C-----------CCCCcchhcccCCCcccccHHHHHHHHhcccCeeeccCccccccC
Confidence 87765431 00 0 001111222222 22227999999999999999999999999999
Q ss_pred cceeeeccEEEEEeCCCcEEEEecCCcccccCHHHHHHHhhh
Q 041601 807 QQIYGFGNISIYVDSLNQMLYAQKPEGWTPVTLDTLLKMHHN 848 (854)
Q Consensus 807 ~qlY~fG~v~iyId~~~~vv~~~~~~~w~PisL~~Ll~~~~~ 848 (854)
+|+|+||.++||+|+.+..|..+..+.|.|+++..|++|+..
T Consensus 722 ~q~f~~g~~~iy~d~~~~~v~~~~~~~w~P~~~~~l~~m~~~ 763 (767)
T KOG2184|consen 722 RQIFRFGNISIYLDSENSKVLDQSEGIWVPVSLNSLLEMALI 763 (767)
T ss_pred ceeeeeeeEEEEecccceeeecccccceeecChhhHHHHHhh
Confidence 999999999999999877888888899999999999999974
No 2
>PF07842 GCFC: GC-rich sequence DNA-binding factor-like protein; InterPro: IPR022783 Sequences in this group are similar to a region of a human GC-rich sequence DNA-binding factor homologue (Q9Y5B6 from SWISSPROT). This is thought to be a protein involved in transcriptional regulation due to partial homologies to a transcription repressor and histone-interacting protein []. This entry also contains tuftelin interacting protein 11 which has been identified as both a nuclear and cytoplasmic protein, and has been implicated in the secretory pathway. Sip1, a septin interacting protein [] is also a member of this family. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=2.2e-53 Score=459.30 Aligned_cols=260 Identities=44% Similarity=0.876 Sum_probs=246.4
Q ss_pred HHHHHHHHHHHHHhhHHHHhhCChHHHHHHHhhhHHHHhhcCCCCCCCCchhHHHHHHhHhhhcCCCCC---cccccCCh
Q 041601 411 LVSLANYFSDLHKRFANDYKLCNLASIACSFALPLFIRMFQGWDPLQNPSHKMEVVLMWKNVLQTDDSQ---DIWDLSTP 487 (854)
Q Consensus 411 l~~~~~~f~~L~~~~~~ey~~~~L~~la~~~v~Pll~~~~~~WdPL~dP~~~~~~i~~Wk~lL~~~~~~---~~~~~~~~ 487 (854)
|+.|.+.|++++.+||+||..|+|+.+|+++++|+||..+.+|+||++|+++++.|.+|+.||...... ....++++
T Consensus 1 l~~i~~~fe~l~~~~~~ey~~~~l~~~~~~~~~P~lr~~l~~W~PL~~p~~~~~~l~~~~~lL~~~~~~~~~~~~~~~~~ 80 (276)
T PF07842_consen 1 LEPILSRFEELKEKFPEEYRDAYLSLLAPALIAPLLRLELQNWDPLEDPSYGVDELKRWRSLLENDQDSSSSSSNRNMTP 80 (276)
T ss_pred ChHHHHHHHHHHHHCHHHHHHcChHHHHHHHHHHHHHHHHhccCCccCcchHHHHHHHHHHHHhhcccccccccccccCc
Confidence 467899999999999999999999999999999999999999999999999999999999999844222 12457899
Q ss_pred HHHHHHHhhHHHHHHhhhCCCCCCChhHHHHHHHHhhhhcchhHHHHhhhhhhHHHHHHhhhccCCCCCCC-----Ccch
Q 041601 488 YSQLISEVVLPAVRIAGINTWDPRDPEQMLRFLESWEKLLPSSVLHTILDTVVLPKLTSAVDSWDPRRETV-----PIHV 562 (854)
Q Consensus 488 y~~Ll~~~~lP~ir~av~~~Wdp~dp~p~l~~l~~W~plLP~~i~~~ileqlIlPKL~~aV~~W~P~~~~~-----p~h~ 562 (854)
|++|+|..|+|+++.++.++|+|+++++++++|+.|.++||.++.++|++++|+|||..+|++|||.++++ |+|.
T Consensus 81 ye~l~w~~~lp~~~~~~~~~w~~~~~~~~~~ll~~W~~~Lp~~~~~~ileqlVlPKL~~~V~~WdP~s~~~t~~~~~~h~ 160 (276)
T PF07842_consen 81 YESLIWEIWLPKVRSAIANEWDPRDPDPDLSLLEAWSPLLPPWILDNILEQLVLPKLQAAVEEWDPLSDSQTRNLVPLHS 160 (276)
T ss_pred HHHhhHHHHHHHHHHhhhcccCCCCCchHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCcccCcccccccchHHH
Confidence 99999999999999887778999999999999999999999999999999999999999999999998877 9999
Q ss_pred hhhcchhhhh-hhHHHHHHHHHHHHHHhccccCCCCchhhhhccchhhhcChhhHHHHHHhccCcc-------ceeCCCC
Q 041601 563 WVHPWLPLLG-HKLEGLYQMIRMKLSNVLDAWHPSDASAYTILSPWKTVFDSASWEQLMRRYIVPK-------FQINPLE 634 (854)
Q Consensus 563 wL~PWlp~L~-~~l~~L~~~Ir~KL~~~L~~W~p~d~sa~~~L~pWk~vf~~~~~~~ll~k~ilPK-------f~inP~~ 634 (854)
||+||+|+++ .+++.|+..||.||+.+|+.|+|+ .+++.+|.|||+||+++.|++++.+||+|| |+|||.+
T Consensus 161 wl~pwlp~l~~~~l~~l~~~ir~kl~~~l~~W~~~-~~~~~~l~~Wk~vf~~~~~~~~~~~~i~Pkl~~~l~~~~i~p~~ 239 (276)
T PF07842_consen 161 WLFPWLPLLGSERLEPLYPAIRRKLRSALDNWHPS-RSALAMLSPWKDVFIPEEWDKLLLRHILPKLAKFLREFVINPRQ 239 (276)
T ss_pred HHhccCcccCchhHHHHHHHHHHHHHHHHHccCcc-cchhhhhhHHHHhCCHhhHHHHHHHhhchHHHHHHHhCCCChhh
Confidence 9999999999 789999999999999999999999 789999999999999999999999999999 6799999
Q ss_pred CchhhHhhhhccccCCchhHHHHHHHHHHHHHHHHHH
Q 041601 635 QKLDQFNWVMPWASAVPTHLMVDLMERFFFTKWLHVL 671 (854)
Q Consensus 635 Q~le~~~~v~~W~~~i~~~~m~~lL~~~fFpkWl~~L 671 (854)
|++++|.+|+.|+++++++.|+++++.+|||||+++|
T Consensus 240 q~l~~~~~vl~W~~~l~~~~l~~ll~~~ffpkwl~~L 276 (276)
T PF07842_consen 240 QDLKPLRNVLAWKDLLPPSVLVQLLEDEFFPKWLQVL 276 (276)
T ss_pred cCHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999986
No 3
>PF12457 TIP_N: Tuftelin interacting protein N terminal ; InterPro: IPR022159 This domain family is found in eukaryotes, and is typically between 99 and 114 amino acids in length. The family is found in association with PF01585 from PFAM. There are two completely conserved residues (G and F) that may be functionally important. TIP is involved in enamel assembly by interacting with one of the major proteins responsible for biomineralisation of enamel - tuftelin.
Probab=99.88 E-value=9.9e-24 Score=196.02 Aligned_cols=79 Identities=52% Similarity=0.867 Sum_probs=56.7
Q ss_pred cchhHhhhc---ccccCCCCCcccCccccccccCCCCCCCcccccccccccCCCCCCccCC------cCCCCCCCCCCcc
Q 041601 2 DEDQEMEKF---GMDNDFEGGQWINGEFYYKKRRAKPTQTKDDVLYGVFADDSDEDDDDDR------DFGRKADLTKPVN 72 (854)
Q Consensus 2 ~~~~~~e~f---d~~~~f~~~~~~~~~f~~~~~r~r~~~tK~~a~yGifa~~d~d~~~~~~------~~~~~~~ys~pv~ 72 (854)
|+|+|||+| |++++++.+ |+++|+|||+||++|||||||++++|++.+.+ +++++++|||||+
T Consensus 2 d~D~e~e~fe~~d~D~~~e~~--------~np~r~Rrr~tKe~aiYGVfadds~d~~~~~~~~~~rr~~~~~~dyskpv~ 73 (109)
T PF12457_consen 2 DDDDEMESFEITDMDLDNERG--------FNPRRRRRRQTKEQAIYGVFADDSDDDDEEERRGSGRRGSKKKKDYSKPVN 73 (109)
T ss_pred ccccchhccCcCCcChhhhhc--------cCCCCcccccChhhhheeeecCCCcccccccccccccccCCcccccCCCCc
Confidence 344478888 333333211 34467788999999999999995555544432 5688999999999
Q ss_pred cccccccCCccccchh
Q 041601 73 FVSTGTVMPEQEIDKN 88 (854)
Q Consensus 73 FVs~G~~~~~~~~~~~ 88 (854)
|||||+++++++++++
T Consensus 74 FVS~G~~~~~~~~~~~ 89 (109)
T PF12457_consen 74 FVSGGVQQPGKEKEKE 89 (109)
T ss_pred eeeCCcccCCCCCccc
Confidence 9999999998765433
No 4
>KOG2184 consensus Tuftelin-interacting protein TIP39, contains G-patch domain [RNA processing and modification]
Probab=99.73 E-value=2.4e-17 Score=192.60 Aligned_cols=225 Identities=21% Similarity=0.436 Sum_probs=196.3
Q ss_pred HHHHHHHhhhHHHH-hhcCCCCCCCCchhHHHHHHhHhhhcCCCCCcccccCChHHHHHHHhhHHHHHHhhhCCCCC-CC
Q 041601 435 ASIACSFALPLFIR-MFQGWDPLQNPSHKMEVVLMWKNVLQTDDSQDIWDLSTPYSQLISEVVLPAVRIAGINTWDP-RD 512 (854)
Q Consensus 435 ~~la~~~v~Pll~~-~~~~WdPL~dP~~~~~~i~~Wk~lL~~~~~~~~~~~~~~y~~Ll~~~~lP~ir~av~~~Wdp-~d 512 (854)
..+.+..++|.+|. .++.|.|. ++.+++.++..|-++|+.+ ..++++.++|+|++..+|.+ |+| .|
T Consensus 420 ~~li~e~~~p~vr~~~l~~w~~~-d~~~m~~lle~W~~~lp~~----------VldnIl~~~v~pkl~~~v~~-W~p~~d 487 (767)
T KOG2184|consen 420 SSLIWEGVMPKVRKAELATWEPR-DMLPMLSLLEAWVPLLPSW----------VLDNILDQLVLPKLSAAVSQ-WDPLTD 487 (767)
T ss_pred ceeeeeeecHHHHHHHHhccCcc-chhHHHhHHHHHHHhhhHH----------HHHHHHHHHHHHHHHHHHhc-cchhhc
Confidence 34677789999999 78888775 8999999999999999988 78999999999999999975 999 58
Q ss_pred hhHHHHHHHHhhhhcchhHHHHhhhhhhHHHHHHhhhccCCCCCCCCcchhhhcchhhhhhh-HHH-HHHHHHHHHHHhc
Q 041601 513 PEQMLRFLESWEKLLPSSVLHTILDTVVLPKLTSAVDSWDPRRETVPIHVWVHPWLPLLGHK-LEG-LYQMIRMKLSNVL 590 (854)
Q Consensus 513 p~p~l~~l~~W~plLP~~i~~~ileqlIlPKL~~aV~~W~P~~~~~p~h~wL~PWlp~L~~~-l~~-L~~~Ir~KL~~~L 590 (854)
..|++.|+.+|.++|-..+.. ++ +.|++||+.++..|+|.+ .+++..|.||...++.. ++. +-..|.+||+.+|
T Consensus 488 ~~~i~swi~pwl~il~~r~~~-l~-~~i~~Kls~~l~~W~p~d--~sa~~~l~pWK~~f~~~~~~~~~~~~ivpkl~~~l 563 (767)
T KOG2184|consen 488 TVPIHSWIHPWLPILGQRLES-LY-PSIRSKLSIALDAWHPSD--RSAIAILSPWKTVFDAASWKEFMRRYIVPKLQLAL 563 (767)
T ss_pred ccccceeeecchHHHhhhHHH-hh-hHHHHHHHHHhhcCCCcc--cCchhhhccchhccchhhHHHHHhhcccccHHHHh
Confidence 999999999999999999987 55 899999999999999987 57899999999999974 665 5689999999999
Q ss_pred cccC--CCCc--hhhhhccchhhhcChhhHHHHHHhccCccc-e------eCCCCCchhhHhhhhccccCCchhHHHHHH
Q 041601 591 DAWH--PSDA--SAYTILSPWKTVFDSASWEQLMRRYIVPKF-Q------INPLEQKLDQFNWVMPWASAVPTHLMVDLM 659 (854)
Q Consensus 591 ~~W~--p~d~--sa~~~L~pWk~vf~~~~~~~ll~k~ilPKf-~------inP~~Q~le~~~~v~~W~~~i~~~~m~~lL 659 (854)
.... |... ..+.++..|+.++++.-+..++.+|+|||+ . -|+.+ ..++-.|+..|+.+++...+++--
T Consensus 564 ~e~~inp~~q~l~~~~~v~~w~~~i~~~~~~~l~~~hffpkwl~~l~~WL~n~p~-~~Ei~~wy~gwK~~~~~~ll~~~~ 642 (767)
T KOG2184|consen 564 DELQINPMNQDLERFTWVMEWKGLIDPHLMAQLLERHFFPKWLNVLYHWLSNSPD-YDEISRWYTGWKSMFPQELLANPY 642 (767)
T ss_pred hhhccCccccchhhhhhhhhhhcccCHHHHHHHHHHhhhHHHHHHHHHHhcCCCc-hHHHHHHHHhHHHhccHhhhcCch
Confidence 9764 4332 345789999999999999999999999992 1 36656 457779999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 041601 660 ERFFFTKWLHVLYHWLN 676 (854)
Q Consensus 660 ~~~fFpkWl~~L~~WL~ 676 (854)
++.-|.+-++.+..=+.
T Consensus 643 v~~~~k~~ld~~~r~~~ 659 (767)
T KOG2184|consen 643 VKDKFKRGLDMMNRAVE 659 (767)
T ss_pred hhhhhhhhHHHHHHhhc
Confidence 99999999998887764
No 5
>PF07842 GCFC: GC-rich sequence DNA-binding factor-like protein; InterPro: IPR022783 Sequences in this group are similar to a region of a human GC-rich sequence DNA-binding factor homologue (Q9Y5B6 from SWISSPROT). This is thought to be a protein involved in transcriptional regulation due to partial homologies to a transcription repressor and histone-interacting protein []. This entry also contains tuftelin interacting protein 11 which has been identified as both a nuclear and cytoplasmic protein, and has been implicated in the secretory pathway. Sip1, a septin interacting protein [] is also a member of this family. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.64 E-value=6.6e-16 Score=167.45 Aligned_cols=179 Identities=25% Similarity=0.480 Sum_probs=155.5
Q ss_pred ChHHHHHHHhhhHHHHh-hcCCCCCCCCchhHHHHHHhHhhhcCCCCCcccccCChHHHHHHHhhHHHHHHhhhCCCCC-
Q 041601 433 NLASIACSFALPLFIRM-FQGWDPLQNPSHKMEVVLMWKNVLQTDDSQDIWDLSTPYSQLISEVVLPAVRIAGINTWDP- 510 (854)
Q Consensus 433 ~L~~la~~~v~Pll~~~-~~~WdPL~dP~~~~~~i~~Wk~lL~~~~~~~~~~~~~~y~~Ll~~~~lP~ir~av~~~Wdp- 510 (854)
....+.+..++|.++.. ..+|++. +|..+++++..|+++|+.. .+++++.++|+|++..+|.+ |||
T Consensus 80 ~ye~l~w~~~lp~~~~~~~~~w~~~-~~~~~~~ll~~W~~~Lp~~----------~~~~ileqlVlPKL~~~V~~-WdP~ 147 (276)
T PF07842_consen 80 PYESLIWEIWLPKVRSAIANEWDPR-DPDPDLSLLEAWSPLLPPW----------ILDNILEQLVLPKLQAAVEE-WDPL 147 (276)
T ss_pred cHHHhhHHHHHHHHHHhhhcccCCC-CCchHHHHHHHHHHhCCHH----------HHHHHHHHHHHHHHHHHHHh-Cccc
Confidence 45688899999999954 5899998 8999999999999999865 79999999999999999986 999
Q ss_pred CChh-----HHHHHHHHhhhhcchhHHHHhhhhhhHHHHHHhhhccCCCCCCCCcchhhhcchhhhhh-hHHH-HHHHHH
Q 041601 511 RDPE-----QMLRFLESWEKLLPSSVLHTILDTVVLPKLTSAVDSWDPRRETVPIHVWVHPWLPLLGH-KLEG-LYQMIR 583 (854)
Q Consensus 511 ~dp~-----p~l~~l~~W~plLP~~i~~~ileqlIlPKL~~aV~~W~P~~~~~p~h~wL~PWlp~L~~-~l~~-L~~~Ir 583 (854)
++.. +++.||..|.|+++..-++.++ ..|+-||+.++++|+|. .++...|.||.+++++ .++. +...|.
T Consensus 148 s~~~t~~~~~~h~wl~pwlp~l~~~~l~~l~-~~ir~kl~~~l~~W~~~---~~~~~~l~~Wk~vf~~~~~~~~~~~~i~ 223 (276)
T PF07842_consen 148 SDSQTRNLVPLHSWLFPWLPLLGSERLEPLY-PAIRRKLRSALDNWHPS---RSALAMLSPWKDVFIPEEWDKLLLRHIL 223 (276)
T ss_pred CcccccccchHHHHHhccCcccCchhHHHHH-HHHHHHHHHHHHccCcc---cchhhhhhHHHHhCCHhhHHHHHHHhhc
Confidence 4676 9999999999999943344566 67999999999999998 3678889999999999 5776 668999
Q ss_pred HHHHHhccccC--CCCc--hhhhhccchhhhcChhhHHHHHHhccCcc
Q 041601 584 MKLSNVLDAWH--PSDA--SAYTILSPWKTVFDSASWEQLMRRYIVPK 627 (854)
Q Consensus 584 ~KL~~~L~~W~--p~d~--sa~~~L~pWk~vf~~~~~~~ll~k~ilPK 627 (854)
+||+.+|+++. |+++ ..+..+..|+++++...+..++..+|+||
T Consensus 224 Pkl~~~l~~~~i~p~~q~l~~~~~vl~W~~~l~~~~l~~ll~~~ffpk 271 (276)
T PF07842_consen 224 PKLAKFLREFVINPRQQDLKPLRNVLAWKDLLPPSVLVQLLEDEFFPK 271 (276)
T ss_pred hHHHHHHHhCCCChhhcCHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 99999999765 4332 45688999999999999999999999998
No 6
>PF01585 G-patch: G-patch domain; InterPro: IPR000467 The D111/G-patch domain [] is a short conserved region of about 40 amino acids which occurs in a number of putative RNA-binding proteins, including tumor suppressor and DNA-damage-repair proteins, suggesting that this domain may have an RNA binding function. This domain has seven highly conserved glycines. A multiple alignment of a small subset of D111/G-patch domains is shown in Fig. 2b of [].; GO: 0003676 nucleic acid binding, 0005622 intracellular
Probab=99.29 E-value=2.8e-12 Score=100.81 Aligned_cols=43 Identities=44% Similarity=0.889 Sum_probs=41.8
Q ss_pred CcHHHHHHHHcCCCCCCCCCCCCCCcccceeeeecCCCccccc
Q 041601 196 GNVVMKMMEKMGWYKGRGLGKDEQGITAPIEARLRPKNMGMGY 238 (854)
Q Consensus 196 ~~~g~kml~kmG~~~G~gLG~~~qGi~~pi~~~~~~~~~glg~ 238 (854)
++||++||+||||++|+|||++.+||++||++..+.++.|||+
T Consensus 2 ~~~g~~lm~kmGw~~G~GLGk~~~G~~~pi~~~~~~~~~GlG~ 44 (45)
T PF01585_consen 2 SSIGFKLMKKMGWKPGQGLGKNGQGIAEPIEVKKKKDRKGLGA 44 (45)
T ss_pred CcHHHHHHHHCCCCCCcCCCcCCccCCcceEEeeEcCCccccC
Confidence 5899999999999999999999999999999999999999997
No 7
>smart00443 G_patch glycine rich nucleic binding domain. A predicted glycine rich nucleic binding domain found in the splicing factor 45, SON DNA binding protein and D-type Retrovirus- polyproteins.
Probab=99.10 E-value=7.7e-11 Score=93.63 Aligned_cols=43 Identities=47% Similarity=0.935 Sum_probs=41.7
Q ss_pred CcHHHHHHHHcCCCCCCCCCCCCCCcccceeeeecCCCccccc
Q 041601 196 GNVVMKMMEKMGWYKGRGLGKDEQGITAPIEARLRPKNMGMGY 238 (854)
Q Consensus 196 ~~~g~kml~kmG~~~G~gLG~~~qGi~~pi~~~~~~~~~glg~ 238 (854)
+++|++||.+|||++|+|||+++|||++||++..++++.|||+
T Consensus 4 ~~~g~~~l~~mGw~~G~GLG~~~~g~~~pi~~~~~~~~~GlG~ 46 (47)
T smart00443 4 SNIGYKLLRKMGWKEGQGLGKNEQGIVEPISAEIKKDRKGLGA 46 (47)
T ss_pred ccHHHHHHHHcCCCCCCcCCCCCCcCccceeEeeccCCcCcCC
Confidence 6899999999999999999999999999999999999999996
No 8
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=98.76 E-value=2.6e-08 Score=108.68 Aligned_cols=49 Identities=33% Similarity=0.480 Sum_probs=46.9
Q ss_pred CcccCCC--CcHHHHHHHHcCCCCCCCCCCCCCCcccceeeeecCCCcccc
Q 041601 189 KGGDIGV--GNVVMKMMEKMGWYKGRGLGKDEQGITAPIEARLRPKNMGMG 237 (854)
Q Consensus 189 ~~~~~~~--~~~g~kml~kmG~~~G~gLG~~~qGi~~pi~~~~~~~~~glg 237 (854)
.||.|+. .|||.|||.||||+.|+|||+.++||++||.|++-|.+..|.
T Consensus 288 ~fakWe~hTRGIgsKLM~kMGY~~G~GLG~~g~GiV~pI~a~vlp~grSLD 338 (486)
T KOG2185|consen 288 LFAKWENHTRGIGSKLMAKMGYREGMGLGVSGQGIVNPILAKVLPAGRSLD 338 (486)
T ss_pred HHhhhccccchHHHHHHHHhchhhccccCcCCCccccchhhhhccCCCCHH
Confidence 4899999 599999999999999999999999999999999999999987
No 9
>PF12656 G-patch_2: DExH-box splicing factor binding site
Probab=98.43 E-value=1.6e-07 Score=82.37 Aligned_cols=45 Identities=31% Similarity=0.730 Sum_probs=43.1
Q ss_pred CcHHHHHHHHcCCCCCCCCCCCCCCcccceeeeecCCCccccccc
Q 041601 196 GNVVMKMMEKMGWYKGRGLGKDEQGITAPIEARLRPKNMGMGYND 240 (854)
Q Consensus 196 ~~~g~kml~kmG~~~G~gLG~~~qGi~~pi~~~~~~~~~glg~~~ 240 (854)
..||+.||..|||++|+|+|++.++.+.|++...|+.+.|||+..
T Consensus 30 e~FG~AlLRGMGW~~~~~~g~~~~~~~~~~~~~~Rp~~lGLGA~~ 74 (77)
T PF12656_consen 30 EEFGAALLRGMGWKPGEGIGKNKKKSVKPVEPKRRPKGLGLGAKP 74 (77)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCcccccCcccccccccCcCCCcCC
Confidence 789999999999999999999999999999999999999999764
No 10
>KOG2809 consensus Telomerase elongation inhibitor/RNA maturation protein PINX1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.38 E-value=2.8e-07 Score=99.84 Aligned_cols=50 Identities=42% Similarity=0.786 Sum_probs=45.7
Q ss_pred ccCCC--CcHHHHHHHHcCCCCCCCCCCCCCCcccceeeeecCCCccccccc
Q 041601 191 GDIGV--GNVVMKMMEKMGWYKGRGLGKDEQGITAPIEARLRPKNMGMGYND 240 (854)
Q Consensus 191 ~~~~~--~~~g~kml~kmG~~~G~gLG~~~qGi~~pi~~~~~~~~~glg~~~ 240 (854)
-.|.. .-||++||.||||++|.|||++.||+..||.+.+..+..|||+.-
T Consensus 19 ~~w~nd~~~fg~KlLekmGW~eG~GLG~~~qG~~~~IKvs~K~d~~GLGa~~ 70 (326)
T KOG2809|consen 19 TAWSNDDSRFGKKLLEKMGWSEGDGLGKNEQGITDPIKVSLKNDTLGLGADK 70 (326)
T ss_pred chhcccchHHHHHHHHHcCCccCCcccccccCCccceEEEeccCCcccCccc
Confidence 35644 789999999999999999999999999999999999999999753
No 11
>KOG0965 consensus Predicted RNA-binding protein, contains SWAP and G-patch domains [General function prediction only]
Probab=98.23 E-value=6.1e-07 Score=104.05 Aligned_cols=47 Identities=32% Similarity=0.623 Sum_probs=39.6
Q ss_pred CCCCcHHHHHHHHcCCCCCCCCCCCCCCcccceeee-ecCCCcccccc
Q 041601 193 IGVGNVVMKMMEKMGWYKGRGLGKDEQGITAPIEAR-LRPKNMGMGYN 239 (854)
Q Consensus 193 ~~~~~~g~kml~kmG~~~G~gLG~~~qGi~~pi~~~-~~~~~~glg~~ 239 (854)
....|||++||+|||||+|+|||..++||.+||.+. .+..+.|+|..
T Consensus 903 Lt~dNiGfQMLqKMGWKEGeGLGS~gkGI~dPVnkg~~~~~g~G~G~s 950 (988)
T KOG0965|consen 903 LTDDNIGFQMLQKMGWKEGEGLGSLGKGIRDPVNKGAAGSLGWGWGGS 950 (988)
T ss_pred ccccchHHHHHHHhCccccccccccCcccccchhhcccccCCcccccC
Confidence 344899999999999999999999999999999875 44566677643
No 12
>KOG3673 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]
Probab=98.18 E-value=7e-07 Score=100.65 Aligned_cols=45 Identities=40% Similarity=0.593 Sum_probs=42.8
Q ss_pred CcHHHHHHHHcCCCCCCCCCCCCCCcccceeeeecCCCccccccc
Q 041601 196 GNVVMKMMEKMGWYKGRGLGKDEQGITAPIEARLRPKNMGMGYND 240 (854)
Q Consensus 196 ~~~g~kml~kmG~~~G~gLG~~~qGi~~pi~~~~~~~~~glg~~~ 240 (854)
.++..+||+||||+.|+||||.+||+.+||.+....++.|||..-
T Consensus 83 ~~va~~lMakMG~~~geGLGK~~QGr~epi~as~Q~GRrGlGl~l 127 (845)
T KOG3673|consen 83 LTVAERLMAKMGHKAGEGLGKHGQGRSEPIAASTQRGRRGLGLNL 127 (845)
T ss_pred chHHHHHHHHhCccccccccccCCCccchhhhhhhccccccCccc
Confidence 689999999999999999999999999999999999999999753
No 13
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.01 E-value=3.4e-06 Score=89.03 Aligned_cols=48 Identities=33% Similarity=0.560 Sum_probs=42.2
Q ss_pred cHHHHHHHHcCCCCCCCCCCCCCCcccceeeeecCCCcc-ccccccchh
Q 041601 197 NVVMKMMEKMGWYKGRGLGKDEQGITAPIEARLRPKNMG-MGYNDFKET 244 (854)
Q Consensus 197 ~~g~kml~kmG~~~G~gLG~~~qGi~~pi~~~~~~~~~g-lg~~~~~E~ 244 (854)
+++++||+||||++|+||||..|||+.|+.+.+...++| |-.+..+|+
T Consensus 213 tvA~~im~k~G~keGqGLGKsEQGlsTalsveKT~~rgG~IIv~a~~~k 261 (378)
T KOG1996|consen 213 TVAHKIMQKYGFKEGQGLGKSEQGLSTALSVEKTSKRGGKIIVGAATEK 261 (378)
T ss_pred hHHHHHHHHhCcccccCcCccccccccceeeeeccccCceeEecCcccc
Confidence 688999999999999999999999999999999999998 556554443
No 14
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=97.73 E-value=1.2e-05 Score=80.84 Aligned_cols=45 Identities=27% Similarity=0.640 Sum_probs=43.3
Q ss_pred CCcHHHHHHHHcCCCCCCCCCCCCCCcccceeeeecCCCcccccc
Q 041601 195 VGNVVMKMMEKMGWYKGRGLGKDEQGITAPIEARLRPKNMGMGYN 239 (854)
Q Consensus 195 ~~~~g~kml~kmG~~~G~gLG~~~qGi~~pi~~~~~~~~~glg~~ 239 (854)
.+++|.++|-+.||.++.|||.+++|+..||.+++++++.|||+.
T Consensus 127 pks~GyrLl~~~GW~pe~GLGp~~~Grr~PvrTvlkkdr~GLG~e 171 (223)
T KOG2384|consen 127 PKSLGYRLLSQYGWSPEAGLGPENQGRRAPVRTVLKKDRIGLGTE 171 (223)
T ss_pred CCCchHHHHHhcCCCcccCCCccccCcccchhHHHhhcccccchh
Confidence 389999999999999999999999999999999999999999975
No 15
>KOG4315 consensus G-patch nucleic acid binding protein [General function prediction only]
Probab=97.08 E-value=0.00038 Score=77.37 Aligned_cols=50 Identities=34% Similarity=0.612 Sum_probs=42.8
Q ss_pred cccCCC---CcHHHHHHHHcCCCCCCCCCCCCCCcccceeeeecCCCccccccc
Q 041601 190 GGDIGV---GNVVMKMMEKMGWYKGRGLGKDEQGITAPIEARLRPKNMGMGYND 240 (854)
Q Consensus 190 ~~~~~~---~~~g~kml~kmG~~~G~gLG~~~qGi~~pi~~~~~~~~~glg~~~ 240 (854)
...|+. .+||..||+.||||+|.|+||++|+ +.+-+-.+||.+.|||++.
T Consensus 145 ~~DyeaiPVe~FGlAmLrG~GWkpg~gigk~~q~-v~~~~~~~rpkglGLGa~~ 197 (455)
T KOG4315|consen 145 LADYEAIPVEGFGLAMLRGMGWKPGPGIGKNKQD-VKIKEPFLRPKGLGLGADP 197 (455)
T ss_pred hhccccCchhHHHHHHHhcCCCCCCCCcCcCCcc-ccccccccCCCCcccCCCc
Confidence 345555 8999999999999999999999776 4566788999999999875
No 16
>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification]
Probab=96.66 E-value=0.00064 Score=69.83 Aligned_cols=44 Identities=30% Similarity=0.370 Sum_probs=41.5
Q ss_pred CcHHHHHHHHcCCCCCCCCCCCCCC---cccceeeeecCCCcccccc
Q 041601 196 GNVVMKMMEKMGWYKGRGLGKDEQG---ITAPIEARLRPKNMGMGYN 239 (854)
Q Consensus 196 ~~~g~kml~kmG~~~G~gLG~~~qG---i~~pi~~~~~~~~~glg~~ 239 (854)
.++|+++|.+|||+||.-|||++.| |.+||-+.++..+.|+|-.
T Consensus 81 e~~gf~lm~~Mg~kpg~~lgkq~e~~~~r~epI~~dI~~~r~g~G~e 127 (268)
T KOG1994|consen 81 EKPGFSLMNDMGMKPGRFLGKQSEMKNKRLEPIWYDIQVAREGMGDE 127 (268)
T ss_pred cCcChHHHHHhCCCccchhccccccccccccceeehHHHHhhccCcc
Confidence 6799999999999999999999999 9999999999999999943
No 17
>KOG0154 consensus RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains [General function prediction only]
Probab=96.39 E-value=0.0015 Score=78.51 Aligned_cols=44 Identities=48% Similarity=0.864 Sum_probs=42.5
Q ss_pred CcHHHHHHHHcCCCCCCCCCCCCCCcccceeeeecCCCcccccc
Q 041601 196 GNVVMKMMEKMGWYKGRGLGKDEQGITAPIEARLRPKNMGMGYN 239 (854)
Q Consensus 196 ~~~g~kml~kmG~~~G~gLG~~~qGi~~pi~~~~~~~~~glg~~ 239 (854)
.++|.+||++|||..|+|||+.+|||..||++..+-.+.|||..
T Consensus 512 sn~~~~~l~~~gw~~g~Glg~~~~g~~~~~e~~~~~~~~~lg~~ 555 (573)
T KOG0154|consen 512 SNVGNRMLQSMGWKEGSGLGKKNQGIKEPIEAEGRDRGAGLGAK 555 (573)
T ss_pred CccchhhhhccCcccccccccccCCCcccccccccccCCCCCcc
Confidence 69999999999999999999999999999999999999999965
No 18
>KOG2138 consensus Predicted RNA binding protein, contains G-patch domain [RNA processing and modification]
Probab=93.33 E-value=0.089 Score=62.21 Aligned_cols=20 Identities=30% Similarity=0.996 Sum_probs=19.6
Q ss_pred CcHHHHHHHHcCCCCCCCCC
Q 041601 196 GNVVMKMMEKMGWYKGRGLG 215 (854)
Q Consensus 196 ~~~g~kml~kmG~~~G~gLG 215 (854)
.+||.+||.+|||++|+|+|
T Consensus 148 ~sIgvrlLrsMGWr~GqgIg 167 (883)
T KOG2138|consen 148 DSIGVRLLRSMGWREGQGIG 167 (883)
T ss_pred hhHHHHHHHHhcCccCCCcC
Confidence 79999999999999999999
No 19
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=93.07 E-value=0.051 Score=62.89 Aligned_cols=33 Identities=52% Similarity=0.879 Sum_probs=29.6
Q ss_pred CCCcHHHHHHHHcCCCCCCCCCCCCCCcccceee
Q 041601 194 GVGNVVMKMMEKMGWYKGRGLGKDEQGITAPIEA 227 (854)
Q Consensus 194 ~~~~~g~kml~kmG~~~G~gLG~~~qGi~~pi~~ 227 (854)
+.++.|++||.||||. |+|||...|||..||..
T Consensus 685 se~NKGhQml~KMGWs-G~GLGak~qGI~DPiSG 717 (757)
T KOG4368|consen 685 GEENKGHQMLVKMGWS-GSGLGAKEQGIQDPISG 717 (757)
T ss_pred ccccchhhhHhhcCcc-cCCcccccccccCcccC
Confidence 3489999999999997 67899999999999954
No 20
>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification]
Probab=83.45 E-value=0.46 Score=49.49 Aligned_cols=42 Identities=36% Similarity=0.589 Sum_probs=39.4
Q ss_pred cHHHHHHHHcCCCCCCCCCCCCCCcccceeeeecCCCccccc
Q 041601 197 NVVMKMMEKMGWYKGRGLGKDEQGITAPIEARLRPKNMGMGY 238 (854)
Q Consensus 197 ~~g~kml~kmG~~~G~gLG~~~qGi~~pi~~~~~~~~~glg~ 238 (854)
-++.+||.-|||++|.-||++..-+-+|+++-.++.+.|||.
T Consensus 39 r~e~k~~~n~~~~e~r~l~~~e~~~ee~~~~la~~~~~~i~~ 80 (268)
T KOG1994|consen 39 RREYKMMENMGYKEGRTLGSNESALEEPIKVLANTKRRGIRA 80 (268)
T ss_pred hhHHHHHHhcCCCCCCccchhhhhhcchHHHhhhhccccccc
Confidence 466799999999999999999999999999999999999994
No 21
>PRK14139 heat shock protein GrpE; Provisional
Probab=80.21 E-value=18 Score=37.43 Aligned_cols=89 Identities=16% Similarity=0.222 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhhccCCCCcccHHHHHHHHHHHH
Q 041601 349 EVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDN------METIVNVLGQIEKGHTLGTLTLVSLANYFSDLH 422 (854)
Q Consensus 349 e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~------l~~~~~~v~~~~~~~~~~~~tl~~~~~~f~~L~ 422 (854)
++.|..+..++...++++..+.-|.++..+.+..+.+.+.. ++.++.+++.|.......+..+..+.+-++-+.
T Consensus 38 ~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerAl~~~~~~~~~l~~Gv~mi~ 117 (185)
T PRK14139 38 EAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESLLPVKDSLEAALADESGDLEKLREGVELTL 117 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccchHHHHHHHHHHHH
Confidence 34455566667777777777777778888777777766544 445566666654322112223556666676667
Q ss_pred HhhHHHHhhCChHHH
Q 041601 423 KRFANDYKLCNLASI 437 (854)
Q Consensus 423 ~~~~~ey~~~~L~~l 437 (854)
.+|-.-+..+||..+
T Consensus 118 k~l~~vL~k~Gv~~I 132 (185)
T PRK14139 118 KQLTSAFEKGRVVEI 132 (185)
T ss_pred HHHHHHHHHCCCcee
Confidence 777777777777554
No 22
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=78.36 E-value=32 Score=37.15 Aligned_cols=73 Identities=16% Similarity=0.271 Sum_probs=54.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcccHHHHHHHHHHHHHhh
Q 041601 347 LAEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVLGQIEKGHTLGTLTLVSLANYFSDLHKRF 425 (854)
Q Consensus 347 ~~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v~~~~~~~~~~~~tl~~~~~~f~~L~~~~ 425 (854)
.-+..|+.+..+++..+++..+...+...|...++.-+.+++++++=++.|..++-. -++++..|=++|+..|
T Consensus 109 vlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~------~MdEyE~~EeeLqkly 181 (338)
T KOG3647|consen 109 VLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPA------HMDEYEDCEEELQKLY 181 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH------HHHHHHHHHHHHHHHH
Confidence 345667888888999999999999999999999999999999999888888766622 2444444444444444
No 23
>PRK14161 heat shock protein GrpE; Provisional
Probab=77.64 E-value=34 Score=35.17 Aligned_cols=97 Identities=10% Similarity=0.236 Sum_probs=63.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhhccCC----CCccc
Q 041601 341 VRLIVDLAEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDN------METIVNVLGQIEKGHT----LGTLT 410 (854)
Q Consensus 341 l~llv~~~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~------l~~~~~~v~~~~~~~~----~~~~t 410 (854)
++.+|..+++.|..+..++...++++..+..|.+++.+....+.+.+.. +..++..++.|..... +....
T Consensus 17 ~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~~~~~ 96 (178)
T PRK14161 17 AEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKELLNVSDNLSRALAHKPANSDVE 96 (178)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcCccccchh
Confidence 4556667777777788888888888888888888888888777766544 3455666665543211 11222
Q ss_pred HHHHHHHHHHHHHhhHHHHhhCChHHH
Q 041601 411 LVSLANYFSDLHKRFANDYKLCNLASI 437 (854)
Q Consensus 411 l~~~~~~f~~L~~~~~~ey~~~~L~~l 437 (854)
+..+.+-++....++-.-+..+|+..+
T Consensus 97 ~~~~~~Gv~mi~k~l~~vL~~~Gv~~I 123 (178)
T PRK14161 97 VTNIIAGVQMTKDELDKVFHKHHIEEI 123 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEe
Confidence 455666666666777777777787655
No 24
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=77.57 E-value=39 Score=32.55 Aligned_cols=58 Identities=12% Similarity=0.358 Sum_probs=39.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 041601 344 IVDLAEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVLGQIE 401 (854)
Q Consensus 344 lv~~~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v~~~~ 401 (854)
+|..-.+.|.+.+.++...++++..|+.++..+.+++-..-...+.++.....+..++
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~ 74 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELE 74 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777888888888888888887777777666666665555544444333
No 25
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=73.83 E-value=60 Score=31.72 Aligned_cols=89 Identities=13% Similarity=0.212 Sum_probs=60.5
Q ss_pred hhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcccHHHHH
Q 041601 336 ELQHNVRLIVDLAEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVLGQIEKGHTLGTLTLVSLA 415 (854)
Q Consensus 336 EL~hNl~llv~~~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v~~~~~~~~~~~~tl~~~~ 415 (854)
.+++=|++-.+.--.+-.++..+++......+.+-....+-++..+...+++++++++-..|.+|+. .|+++.
T Consensus 35 R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~L~~~~~-------lL~~~v 107 (131)
T PF10158_consen 35 RYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQLSRCQS-------LLNQTV 107 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 4455555555554455556666666665666666655666666677777778888888877777773 578888
Q ss_pred HHHHHHHHhhHHHHhh
Q 041601 416 NYFSDLHKRFANDYKL 431 (854)
Q Consensus 416 ~~f~~L~~~~~~ey~~ 431 (854)
...++|=.-.|++.++
T Consensus 108 ~~ie~LN~~LP~~~RL 123 (131)
T PF10158_consen 108 PSIETLNEILPEEERL 123 (131)
T ss_pred HHHHHHHhhCChhhcC
Confidence 8888888888888653
No 26
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=69.99 E-value=36 Score=43.69 Aligned_cols=90 Identities=16% Similarity=0.244 Sum_probs=51.1
Q ss_pred hhhhhHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcccHH
Q 041601 336 ELQHNVRLIVDLAEVDIQ---KIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVLGQIEKGHTLGTLTLV 412 (854)
Q Consensus 336 EL~hNl~llv~~~e~di~---~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v~~~~~~~~~~~~tl~ 412 (854)
.|..-|..+.+++++-.. ..+++.+..+.+...|+..++++...+......++.|+.-+..+++-........-.+.
T Consensus 782 ~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~ 861 (1293)
T KOG0996|consen 782 KLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLK 861 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHH
Confidence 444455555555544322 24555666677777777777777777766666677776666666554222222222456
Q ss_pred HHHHHHHHHHHhh
Q 041601 413 SLANYFSDLHKRF 425 (854)
Q Consensus 413 ~~~~~f~~L~~~~ 425 (854)
++.+.++.|..+|
T Consensus 862 ~~~~~ie~l~kE~ 874 (1293)
T KOG0996|consen 862 ELEEQIEELKKEV 874 (1293)
T ss_pred HHHHHHHHHHHHH
Confidence 5666666655544
No 27
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=67.33 E-value=70 Score=35.01 Aligned_cols=52 Identities=19% Similarity=0.360 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 041601 350 VDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVLGQIE 401 (854)
Q Consensus 350 ~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v~~~~ 401 (854)
.-|..+..++...++.+.+|..+...|+..++.-+.+++|.++=+..|..++
T Consensus 169 ~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vR 220 (267)
T PF10234_consen 169 EAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVR 220 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344455566666666777777777777777777777777777777666555
No 28
>PRK14147 heat shock protein GrpE; Provisional
Probab=66.04 E-value=65 Score=32.95 Aligned_cols=86 Identities=15% Similarity=0.181 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhhccCCCCcccHHHHHHHHHHHHHhh
Q 041601 352 IQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDN------METIVNVLGQIEKGHTLGTLTLVSLANYFSDLHKRF 425 (854)
Q Consensus 352 i~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~------l~~~~~~v~~~~~~~~~~~~tl~~~~~~f~~L~~~~ 425 (854)
|..+..++...++++..+..|.++..+....+.+.+.. ++.+|.+++.|........-....+.+-++.+..++
T Consensus 27 l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a~~~~~~~lLpv~DnlerAl~~~~~~~~~l~~Gv~mi~k~l 106 (172)
T PRK14147 27 VESLRSEIALVKADALRERADLENQRKRIARDVEQARKFANEKLLGELLPVFDSLDAGLTAAGTEPSPLRDGLELTYKQL 106 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 34445555555666666666666666666665554433 445555555554321111112344555555556666
Q ss_pred HHHHhhCChHHH
Q 041601 426 ANDYKLCNLASI 437 (854)
Q Consensus 426 ~~ey~~~~L~~l 437 (854)
-.-+..+|+..+
T Consensus 107 ~~~L~~~Gv~~i 118 (172)
T PRK14147 107 LKVAADNGLTLL 118 (172)
T ss_pred HHHHHHCCCEEe
Confidence 666666676544
No 29
>PRK14154 heat shock protein GrpE; Provisional
Probab=65.19 E-value=76 Score=33.49 Aligned_cols=89 Identities=16% Similarity=0.214 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhhccCC---CCcccHHHHHHHHH
Q 041601 349 EVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDN------METIVNVLGQIEKGHT---LGTLTLVSLANYFS 419 (854)
Q Consensus 349 e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~------l~~~~~~v~~~~~~~~---~~~~tl~~~~~~f~ 419 (854)
+++|..+..++...++++..+..|-+++.+....+.+.+.. +..+|.+++.|..... ...-.+..+..-++
T Consensus 58 ~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLeRAL~~~~~~~~~~~~l~eGve 137 (208)
T PRK14154 58 EGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHGLESPASEDPQVKSMRDGMS 137 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhHHHHHHHHH
Confidence 34455566666666777777777777777777777666544 3455666665543211 11123455666666
Q ss_pred HHHHhhHHHHhhCChHHH
Q 041601 420 DLHKRFANDYKLCNLASI 437 (854)
Q Consensus 420 ~L~~~~~~ey~~~~L~~l 437 (854)
.+..+|-.-+..+||..+
T Consensus 138 mi~k~l~~vL~k~GVe~I 155 (208)
T PRK14154 138 LTLDLLHNTLAKHGVQVI 155 (208)
T ss_pred HHHHHHHHHHHHCCCEEe
Confidence 666777777777777665
No 30
>PRK14140 heat shock protein GrpE; Provisional
Probab=63.96 E-value=1.2e+02 Score=31.51 Aligned_cols=92 Identities=16% Similarity=0.256 Sum_probs=53.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhhccCC--CCcccHHHHHH
Q 041601 345 VDLAEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDN------METIVNVLGQIEKGHT--LGTLTLVSLAN 416 (854)
Q Consensus 345 v~~~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~------l~~~~~~v~~~~~~~~--~~~~tl~~~~~ 416 (854)
++..++.|..+..++...++++..+.-|.+++.+....+...+.. +..++..++.|..... ...-.+..+..
T Consensus 39 ~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnLerAl~~~~~~~~~~~i~~ 118 (191)
T PRK14140 39 LDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNFERALQIEADDEQTKSLLK 118 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchHHHHHH
Confidence 333555666667777777777777777777777777666655443 3455555555543211 11113455555
Q ss_pred HHHHHHHhhHHHHhhCChHH
Q 041601 417 YFSDLHKRFANDYKLCNLAS 436 (854)
Q Consensus 417 ~f~~L~~~~~~ey~~~~L~~ 436 (854)
-+..+...|-.-+..||+..
T Consensus 119 Gv~mi~k~l~~~L~k~GV~~ 138 (191)
T PRK14140 119 GVEMVHRQLLEALKKEGVEV 138 (191)
T ss_pred HHHHHHHHHHHHHHHCCCEe
Confidence 66666666666666677643
No 31
>PRK14158 heat shock protein GrpE; Provisional
Probab=63.45 E-value=77 Score=33.11 Aligned_cols=90 Identities=11% Similarity=0.154 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhhccCC-CCcccHHHHHHHHHH
Q 041601 348 AEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDN------METIVNVLGQIEKGHT-LGTLTLVSLANYFSD 420 (854)
Q Consensus 348 ~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~------l~~~~~~v~~~~~~~~-~~~~tl~~~~~~f~~ 420 (854)
.+..|..+..++...++++..+.-|-+++.+..+.+.+.+.. +..++..++.|..... ...-.++.+..-++.
T Consensus 45 le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~~~~~~i~~Gv~m 124 (194)
T PRK14158 45 LEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGNESLILEILPAVDNMERALDHADEESMSAIIEGIRM 124 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhccCcchHHHHHHHHHH
Confidence 344455566666666777777777777777777776665544 3455666665543211 111135667777777
Q ss_pred HHHhhHHHHhhCChHHH
Q 041601 421 LHKRFANDYKLCNLASI 437 (854)
Q Consensus 421 L~~~~~~ey~~~~L~~l 437 (854)
+...|-.-+..+||..+
T Consensus 125 i~k~l~~vLek~Gv~~I 141 (194)
T PRK14158 125 TLSMLLSTLKKFGVTPV 141 (194)
T ss_pred HHHHHHHHHHHCCCEEe
Confidence 77777777777888655
No 32
>PRK14155 heat shock protein GrpE; Provisional
Probab=60.23 E-value=73 Score=33.63 Aligned_cols=87 Identities=11% Similarity=0.205 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhhccC---CCC--cccHHHHHHHHH
Q 041601 351 DIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDN------METIVNVLGQIEKGH---TLG--TLTLVSLANYFS 419 (854)
Q Consensus 351 di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~------l~~~~~~v~~~~~~~---~~~--~~tl~~~~~~f~ 419 (854)
+|..+..++...++++..+.-|.+++.+..+.+.+.+.. ++.+|.+++.|.... ... .-.+..+..-++
T Consensus 21 ~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~~~~~~~~~i~~Gve 100 (208)
T PRK14155 21 EIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLLGAADNLGRATAASPKDSADPAVKNFIIGVE 100 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHhcccccccchHHHHHHHHHH
Confidence 344455556666666666666777777666666555433 345555555554321 111 112456666677
Q ss_pred HHHHhhHHHHhhCChHHH
Q 041601 420 DLHKRFANDYKLCNLASI 437 (854)
Q Consensus 420 ~L~~~~~~ey~~~~L~~l 437 (854)
.+..+|-.-+..+||..+
T Consensus 101 mi~k~~~~~L~k~GV~~I 118 (208)
T PRK14155 101 MTEKELLGAFERNGLKKI 118 (208)
T ss_pred HHHHHHHHHHHHCCCcee
Confidence 777777777777888665
No 33
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=59.97 E-value=1.1e+02 Score=34.51 Aligned_cols=34 Identities=6% Similarity=0.190 Sum_probs=27.8
Q ss_pred HHhhHHHHhhCChHHHHHHHhhhHHHHhhcCCCC
Q 041601 422 HKRFANDYKLCNLASIACSFALPLFIRMFQGWDP 455 (854)
Q Consensus 422 ~~~~~~ey~~~~L~~la~~~v~Pll~~~~~~WdP 455 (854)
+-.|.+||..|.+-..++-.+.|++-..+-.|..
T Consensus 116 kf~yKdEYEkFKl~~tii~l~~~~~~~~~~~~r~ 149 (330)
T PF07851_consen 116 KFKYKDEYEKFKLYLTIILLLFAVALLFLLNYRV 149 (330)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHcChHH
Confidence 4479999999999888888899987777777733
No 34
>PRK14162 heat shock protein GrpE; Provisional
Probab=58.91 E-value=1.4e+02 Score=31.10 Aligned_cols=87 Identities=14% Similarity=0.190 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhhccCC--CCcccHHHHHHHHHHHH
Q 041601 351 DIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDN------METIVNVLGQIEKGHT--LGTLTLVSLANYFSDLH 422 (854)
Q Consensus 351 di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~------l~~~~~~v~~~~~~~~--~~~~tl~~~~~~f~~L~ 422 (854)
.|..+..++...++++..+..|.+++.+....+.+.+.. +..+|.+++.|..... ...-.+..+..-++.+.
T Consensus 47 ~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~~~~~~l~~Gvemi~ 126 (194)
T PRK14162 47 EIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDVLPAMDNLERALAVKADDEAAKQLKKGVQMTL 126 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccchhHHHHHHHHHHHH
Confidence 344455555556666666666666666666666555443 3455555555543211 11123456666777777
Q ss_pred HhhHHHHhhCChHHH
Q 041601 423 KRFANDYKLCNLASI 437 (854)
Q Consensus 423 ~~~~~ey~~~~L~~l 437 (854)
..|-.-+..+||..+
T Consensus 127 k~l~~vL~~~GV~~I 141 (194)
T PRK14162 127 DHLVKALKDHGVTEI 141 (194)
T ss_pred HHHHHHHHHCCCEEe
Confidence 777777777777554
No 35
>PRK14160 heat shock protein GrpE; Provisional
Probab=56.08 E-value=1.8e+02 Score=30.90 Aligned_cols=92 Identities=16% Similarity=0.276 Sum_probs=56.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhhccCCCCcccHHHHHHHH
Q 041601 345 VDLAEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDN------METIVNVLGQIEKGHTLGTLTLVSLANYF 418 (854)
Q Consensus 345 v~~~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~------l~~~~~~v~~~~~~~~~~~~tl~~~~~~f 418 (854)
+...++.+..+..++...++++..+..|-++..+....+...+.. +..+|.+++.|...... ....+.+..-+
T Consensus 63 ~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LLpVlDnLerAl~~-~~~~~~l~~Gv 141 (211)
T PRK14160 63 NNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELLPVLDNLERAAAV-EGSVEDLKKGI 141 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhc-ccchhHHHHHH
Confidence 444556666777777777888877877888888777777666443 44555666555432111 11234555666
Q ss_pred HHHHHhhHHHHhhCChHHH
Q 041601 419 SDLHKRFANDYKLCNLASI 437 (854)
Q Consensus 419 ~~L~~~~~~ey~~~~L~~l 437 (854)
.....+|-.-+..+||..+
T Consensus 142 ~mi~kql~~vL~k~GVe~I 160 (211)
T PRK14160 142 EMTVKQFKTSLEKLGVEEI 160 (211)
T ss_pred HHHHHHHHHHHHHCCCEEe
Confidence 6666666666667777554
No 36
>PRK14156 heat shock protein GrpE; Provisional
Probab=55.91 E-value=98 Score=31.87 Aligned_cols=86 Identities=14% Similarity=0.249 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhhccCCCCcccHHHHHHHHHHHHHh
Q 041601 351 DIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDN------METIVNVLGQIEKGHTLGTLTLVSLANYFSDLHKR 424 (854)
Q Consensus 351 di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~------l~~~~~~v~~~~~~~~~~~~tl~~~~~~f~~L~~~ 424 (854)
+|..+..++...++++..+..|.+++.+....+.+.+.. +..++..++.|........ ..+.+..-++....+
T Consensus 35 ~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~-~~~~l~~Gv~mi~k~ 113 (177)
T PRK14156 35 ELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAILPSLDNLERALAVEG-LTDDVKKGLEMVQES 113 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhCcc-cchhHHHHHHHHHHH
Confidence 344555566666666666666666666666666555333 3455555555543211111 113455566666667
Q ss_pred hHHHHhhCChHHH
Q 041601 425 FANDYKLCNLASI 437 (854)
Q Consensus 425 ~~~ey~~~~L~~l 437 (854)
|-.-+..+|+..+
T Consensus 114 l~~~L~~~GV~~i 126 (177)
T PRK14156 114 LIQALKEEGVEEV 126 (177)
T ss_pred HHHHHHHCCCeec
Confidence 7666667777554
No 37
>PRK14141 heat shock protein GrpE; Provisional
Probab=55.22 E-value=1.2e+02 Score=32.14 Aligned_cols=87 Identities=13% Similarity=0.193 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhhccC---CC-----CcccHHHHHH
Q 041601 351 DIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDN------METIVNVLGQIEKGH---TL-----GTLTLVSLAN 416 (854)
Q Consensus 351 di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~------l~~~~~~v~~~~~~~---~~-----~~~tl~~~~~ 416 (854)
.|..+..++...++++..+..|.+++.+....+.+.+.. +..+|.+++.|.... .. ....+..+.+
T Consensus 39 ~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~~~dLLpViDnLerAl~~~~~~~~~~~~~~~~~l~e 118 (209)
T PRK14141 39 PLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYGIAGFARDMLSVSDNLRRALDAIPAEARAAADAGLKALIE 118 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhccccccccccchhHHHHHH
Confidence 444555566666666666667777777666666555433 334555555543211 00 1123556666
Q ss_pred HHHHHHHhhHHHHhhCChHHH
Q 041601 417 YFSDLHKRFANDYKLCNLASI 437 (854)
Q Consensus 417 ~f~~L~~~~~~ey~~~~L~~l 437 (854)
-++-+..++-.-+..|||..+
T Consensus 119 Gv~mi~k~l~~vLek~GV~~I 139 (209)
T PRK14141 119 GVEMTERAMLNALERHGVKKL 139 (209)
T ss_pred HHHHHHHHHHHHHHHCCCEEE
Confidence 666666677777777777544
No 38
>PRK14151 heat shock protein GrpE; Provisional
Probab=55.19 E-value=1.7e+02 Score=30.03 Aligned_cols=87 Identities=15% Similarity=0.299 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhhccCC---CCcccHHHHHHHHHHH
Q 041601 351 DIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDN------METIVNVLGQIEKGHT---LGTLTLVSLANYFSDL 421 (854)
Q Consensus 351 di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~------l~~~~~~v~~~~~~~~---~~~~tl~~~~~~f~~L 421 (854)
.|..+..++...++++..+..|-+++.+....+.+.+.. ++.++..++.|..... ...-.+..+..-++.+
T Consensus 28 ~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~~~~~~~~~~Gv~mi 107 (176)
T PRK14151 28 RVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPVVDSLERGLELSSADDEAIKPMREGVELT 107 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhHHHHHHHHHHH
Confidence 444555666666777777777777777777776655443 3455556655543211 1111244555556655
Q ss_pred HHhhHHHHhhCChHHH
Q 041601 422 HKRFANDYKLCNLASI 437 (854)
Q Consensus 422 ~~~~~~ey~~~~L~~l 437 (854)
...|-.-+..+|+..+
T Consensus 108 ~k~l~~~L~k~Gv~~i 123 (176)
T PRK14151 108 LKMFQDTLKRYQLEAV 123 (176)
T ss_pred HHHHHHHHHHCCCEEe
Confidence 6666666666666444
No 39
>PRK04406 hypothetical protein; Provisional
Probab=54.34 E-value=68 Score=28.30 Aligned_cols=45 Identities=11% Similarity=0.244 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 353 QKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVL 397 (854)
Q Consensus 353 ~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v 397 (854)
..+..++.....+++-++.-.+.|++.+..+..+|++|+.-+..|
T Consensus 7 ~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 7 EQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555666666666666666666555444
No 40
>PRK14163 heat shock protein GrpE; Provisional
Probab=54.14 E-value=1.2e+02 Score=32.24 Aligned_cols=84 Identities=12% Similarity=0.236 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhhccCCCCcccHHHHHHHHHHH
Q 041601 348 AEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDN------METIVNVLGQIEKGHTLGTLTLVSLANYFSDL 421 (854)
Q Consensus 348 ~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~------l~~~~~~v~~~~~~~~~~~~tl~~~~~~f~~L 421 (854)
.++.|..+..++...++++..+.-|-+++.+....+.+.+.. +..+|.+++.|...... ..+..-++.+
T Consensus 45 l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVlDnLerAl~~-----~~l~~Gv~mi 119 (214)
T PRK14163 45 LTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVLDDVGRAREH-----GELVGGFKSV 119 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhc-----hhHHHHHHHH
Confidence 344556667777777888888888888888888777766544 33455555555432111 1244444555
Q ss_pred HHhhHHHHhhCChHH
Q 041601 422 HKRFANDYKLCNLAS 436 (854)
Q Consensus 422 ~~~~~~ey~~~~L~~ 436 (854)
...|-.-+..+||..
T Consensus 120 ~k~l~~~L~k~Gv~~ 134 (214)
T PRK14163 120 AESLETTVAKLGLQQ 134 (214)
T ss_pred HHHHHHHHHHCCCEE
Confidence 555555555566643
No 41
>PRK14148 heat shock protein GrpE; Provisional
Probab=53.11 E-value=2.1e+02 Score=29.97 Aligned_cols=93 Identities=15% Similarity=0.229 Sum_probs=56.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhhccCC--CCcccHHHHHH
Q 041601 345 VDLAEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDN------METIVNVLGQIEKGHT--LGTLTLVSLAN 416 (854)
Q Consensus 345 v~~~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~------l~~~~~~v~~~~~~~~--~~~~tl~~~~~ 416 (854)
++..++.|..+..++...++++..+.-|-+++.+....+.+.+.. +..++..++.|..... ...-....+..
T Consensus 42 ~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~~~~~~~~~~~l~~ 121 (195)
T PRK14148 42 LERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVIDSIEQALKHEVKLEEAIAMKE 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccchhHHHHHH
Confidence 444566677777777778888888888888888887777666544 3455555555542211 11112344555
Q ss_pred HHHHHHHhhHHHHhhCChHHH
Q 041601 417 YFSDLHKRFANDYKLCNLASI 437 (854)
Q Consensus 417 ~f~~L~~~~~~ey~~~~L~~l 437 (854)
-++-...+|-.-+..+|+..+
T Consensus 122 Gv~mi~k~l~~vL~k~Gv~~I 142 (195)
T PRK14148 122 GIELTAKMLVDILKKNGVEEL 142 (195)
T ss_pred HHHHHHHHHHHHHHHCCCEEe
Confidence 555556666666666666443
No 42
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=51.09 E-value=1.1e+02 Score=28.62 Aligned_cols=43 Identities=16% Similarity=0.225 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCcccHHHHHHHHHHHHHhhHHHHh
Q 041601 385 QQLDNMETIVNVLGQIEKGHTLGTLTLVSLANYFSDLHKRFANDYK 430 (854)
Q Consensus 385 ~~i~~l~~~~~~v~~~~~~~~~~~~tl~~~~~~f~~L~~~~~~ey~ 430 (854)
.-|.+|-.+...|..+. ++..+|..+-.+.+..|...||.++.
T Consensus 58 ~vi~~L~~a~~~l~~I~---~n~~lT~~q~~~~I~~l~~~~~~e~~ 100 (113)
T PF02520_consen 58 AVISNLSSAFAKLSAIL---DNKSLTRQQQQEAIDALRKQYPEEVD 100 (113)
T ss_pred HHHHHHHHHHHHHHHHH---cCcccCHHHHHHHHHHHHHHCCHHHH
Confidence 44555555555555544 36788999999999999999999965
No 43
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=50.47 E-value=88 Score=31.98 Aligned_cols=28 Identities=14% Similarity=0.299 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 041601 375 NLEKTAAEQKQQLDNMETIVNVLGQIEK 402 (854)
Q Consensus 375 ~l~~~~~~e~~~i~~l~~~~~~v~~~~~ 402 (854)
.|+.+++....+|++|+.+......+++
T Consensus 124 eL~~eI~~L~~~i~~le~~~~~~k~Lrn 151 (171)
T PF04799_consen 124 ELEDEIKQLEKEIQRLEEIQSKSKTLRN 151 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555666666666666665553
No 44
>PRK14145 heat shock protein GrpE; Provisional
Probab=48.76 E-value=2.4e+02 Score=29.54 Aligned_cols=88 Identities=16% Similarity=0.209 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhhccCCCCcccHHHHHHHHHHHH
Q 041601 349 EVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDN------METIVNVLGQIEKGHTLGTLTLVSLANYFSDLH 422 (854)
Q Consensus 349 e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~------l~~~~~~v~~~~~~~~~~~~tl~~~~~~f~~L~ 422 (854)
+..+..+..++...++++..+..|.++..+....+.+.+.. +..+|..++.|...... ......+..-+....
T Consensus 51 ~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~DnLerAl~~-~~~~~~l~~Gv~mi~ 129 (196)
T PRK14145 51 KQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVMDNFERALAS-SGDYNSLKEGIELIY 129 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhc-cccHHHHHHHHHHHH
Confidence 34455566666667777777777777777777776665544 33455555554422111 112344555555555
Q ss_pred HhhHHHHhhCChHHH
Q 041601 423 KRFANDYKLCNLASI 437 (854)
Q Consensus 423 ~~~~~ey~~~~L~~l 437 (854)
..|-.-+..+|+..+
T Consensus 130 k~l~~vL~k~GVe~I 144 (196)
T PRK14145 130 RQFKKILDKFGVKEI 144 (196)
T ss_pred HHHHHHHHHCCCEEe
Confidence 556555556666443
No 45
>PRK14153 heat shock protein GrpE; Provisional
Probab=47.12 E-value=2.1e+02 Score=29.97 Aligned_cols=92 Identities=16% Similarity=0.247 Sum_probs=54.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhhccCC--CCcccHHHHHHH
Q 041601 346 DLAEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDN------METIVNVLGQIEKGHT--LGTLTLVSLANY 417 (854)
Q Consensus 346 ~~~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~------l~~~~~~v~~~~~~~~--~~~~tl~~~~~~ 417 (854)
...+++|..+..++...++++..+..|-+++.+....+.+.+.. +..+|..++.|..... ...-.+..+..-
T Consensus 36 ~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerAl~~~~~~~~~~~l~~G 115 (194)
T PRK14153 36 STADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKFVLEQVLLDLLEVTDNFERALESARTAEDMNSIVEG 115 (194)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchHHHHHHH
Confidence 34455666677777777788877777777777777776655443 3445555555432211 111124556666
Q ss_pred HHHHHHhhHHHHhhCChHHH
Q 041601 418 FSDLHKRFANDYKLCNLASI 437 (854)
Q Consensus 418 f~~L~~~~~~ey~~~~L~~l 437 (854)
|+.+..+|-.-+..+|+..+
T Consensus 116 vemi~k~~~~vL~k~Gv~~I 135 (194)
T PRK14153 116 IEMVSKQFFSILEKYGLERI 135 (194)
T ss_pred HHHHHHHHHHHHHHCCCeee
Confidence 66666666666666676544
No 46
>PRK14143 heat shock protein GrpE; Provisional
Probab=46.76 E-value=2.3e+02 Score=30.60 Aligned_cols=92 Identities=13% Similarity=0.275 Sum_probs=54.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhhccCC---CCcccHHHHHH
Q 041601 346 DLAEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDN------METIVNVLGQIEKGHT---LGTLTLVSLAN 416 (854)
Q Consensus 346 ~~~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~------l~~~~~~v~~~~~~~~---~~~~tl~~~~~ 416 (854)
...+..|..+..++...++++..+.-|.+++.+....+.+.+.. +..+|..++.|..... ...-....|..
T Consensus 70 ~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~~~~~~~~l~~ 149 (238)
T PRK14143 70 AQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERARQQLKPEGEEAQALHR 149 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccccchhHHHHHH
Confidence 33455566677777777888877777888888777776655443 4455666665543211 11112344555
Q ss_pred HHHHHHHhhHHHHhhCChHHH
Q 041601 417 YFSDLHKRFANDYKLCNLASI 437 (854)
Q Consensus 417 ~f~~L~~~~~~ey~~~~L~~l 437 (854)
-++.+...+-.-+..+|+..+
T Consensus 150 Gve~i~k~l~~~L~k~GV~~i 170 (238)
T PRK14143 150 SYQGLYKQLVDVLKRLGVSPM 170 (238)
T ss_pred HHHHHHHHHHHHHHHCCCeee
Confidence 566666666666666676554
No 47
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=46.37 E-value=2.6e+02 Score=30.73 Aligned_cols=71 Identities=13% Similarity=0.341 Sum_probs=58.0
Q ss_pred CCCChhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhh
Q 041601 331 DVPMPELQHNVRLIVDLAEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETI----VNVLGQIE 401 (854)
Q Consensus 331 ~~~~pEL~hNl~llv~~~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~----~~~v~~~~ 401 (854)
.+.+.++.--|+-.+....+.+.++.+.+.+......+|+...++-..+++..+++++.|+.| |+.-++|+
T Consensus 157 ~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE 231 (267)
T PF10234_consen 157 PLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLE 231 (267)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 455667777888889999999999999999988888899988888888999999999999976 55544443
No 48
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=43.45 E-value=1.5e+02 Score=27.92 Aligned_cols=53 Identities=15% Similarity=0.257 Sum_probs=38.9
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 340 NVRLIVDLAEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMET 392 (854)
Q Consensus 340 Nl~llv~~~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~ 392 (854)
+|--.++.-|+.|..+..++...++.+..|..|=.+|.-+-+..++.+..++.
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455677788888888888888888888877777777666666666655544
No 49
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=43.01 E-value=30 Score=32.07 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 351 DIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQ 385 (854)
Q Consensus 351 di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~ 385 (854)
+|..++.+++....+...|.+++..+.+++.....
T Consensus 30 ~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~ 64 (108)
T PF02403_consen 30 EIIELDQERRELQQELEELRAERNELSKEIGKLKK 64 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 45667888888888888888888888777655543
No 50
>PRK14144 heat shock protein GrpE; Provisional
Probab=41.82 E-value=3.5e+02 Score=28.44 Aligned_cols=87 Identities=13% Similarity=0.192 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhhccCCC-CcccHHHHHHHHHHHHH
Q 041601 351 DIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDN------METIVNVLGQIEKGHTL-GTLTLVSLANYFSDLHK 423 (854)
Q Consensus 351 di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~------l~~~~~~v~~~~~~~~~-~~~tl~~~~~~f~~L~~ 423 (854)
.|..+..++...++++..+..|.++..+....+.+.+.. +..++.+++.|...... ..-+...+..-+..+..
T Consensus 53 ~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~~~~~i~~Gv~mi~k 132 (199)
T PRK14144 53 QLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKYGVEKLISALLPVVDSLEQALQLADKNSDPSMHEGLELTMK 132 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHcccccchhHHHHHHHHHHH
Confidence 344555566666677766777777777776666655443 33455555555422110 01112345555555555
Q ss_pred hhHHHHhhCChHHH
Q 041601 424 RFANDYKLCNLASI 437 (854)
Q Consensus 424 ~~~~ey~~~~L~~l 437 (854)
.|-.-+..+|+..+
T Consensus 133 ~l~~~L~k~GV~~I 146 (199)
T PRK14144 133 LFLDALQKFDVEQI 146 (199)
T ss_pred HHHHHHHHCCCEEe
Confidence 66666666666443
No 51
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=41.59 E-value=2.3e+02 Score=31.88 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041601 350 VDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVLG 398 (854)
Q Consensus 350 ~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v~ 398 (854)
++|...+.++...+.....|+.+++.+...++...+++..+..-+..++
T Consensus 216 ~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 216 QELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444444444433333
No 52
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=39.48 E-value=1.9e+02 Score=28.81 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhhHHHHhhCChHHH
Q 041601 412 VSLANYFSDLHKRFANDYKLCNLASI 437 (854)
Q Consensus 412 ~~~~~~f~~L~~~~~~ey~~~~L~~l 437 (854)
..+.+.|..+...+-.-+..+|+..+
T Consensus 88 ~~~~~g~~~~~~~l~~~L~~~Gv~~i 113 (165)
T PF01025_consen 88 ESLLEGLEMILKQLEDILEKNGVEEI 113 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEec
Confidence 44555555555555555555565433
No 53
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=38.98 E-value=3.8e+02 Score=26.13 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=12.1
Q ss_pred CChhhhhhHHHHHHHh
Q 041601 333 PMPELQHNVRLIVDLA 348 (854)
Q Consensus 333 ~~pEL~hNl~llv~~~ 348 (854)
....|.|||+.+.++.
T Consensus 18 s~~dLahNL~v~~~R~ 33 (126)
T PF07028_consen 18 SNSDLAHNLRVTCYRS 33 (126)
T ss_pred cHHHHHhhhhhhhhHh
Confidence 4568999999776654
No 54
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=38.91 E-value=2.1e+02 Score=23.83 Aligned_cols=40 Identities=13% Similarity=0.341 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041601 359 LNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVLG 398 (854)
Q Consensus 359 ~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v~ 398 (854)
+....-.+..++.|.+.+.+.++..++-++.|-.+.+.|.
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs 48 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEVVS 48 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334555666666666666666666666555555554
No 55
>PRK14146 heat shock protein GrpE; Provisional
Probab=38.59 E-value=3.2e+02 Score=29.06 Aligned_cols=86 Identities=12% Similarity=0.198 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhhccCC--CCcccHHHHHHHHHHHHH
Q 041601 352 IQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDN------METIVNVLGQIEKGHT--LGTLTLVSLANYFSDLHK 423 (854)
Q Consensus 352 i~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~------l~~~~~~v~~~~~~~~--~~~~tl~~~~~~f~~L~~ 423 (854)
|..+..++...++++..+..|.+++.+....+.+.+.. +..+|.+++.|..... ...-.+..+..-++-+..
T Consensus 63 l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~~~lLpv~DnlerAl~~~~~~~~~~~l~~Gv~mi~k 142 (215)
T PRK14146 63 LDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFLNPIDNLERVGATQNQSEELKPFVEGVKMILK 142 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 33444555555666666666666666666666555433 3455555555543211 111123445555666666
Q ss_pred hhHHHHhhCChHHH
Q 041601 424 RFANDYKLCNLASI 437 (854)
Q Consensus 424 ~~~~ey~~~~L~~l 437 (854)
+|-.-+..+|+..+
T Consensus 143 ~l~~~L~k~Gv~~i 156 (215)
T PRK14146 143 EFYSVLEKSNVIRF 156 (215)
T ss_pred HHHHHHHHCcCeee
Confidence 66666666777544
No 56
>PRK14157 heat shock protein GrpE; Provisional
Probab=37.77 E-value=1.6e+02 Score=31.49 Aligned_cols=39 Identities=10% Similarity=0.128 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 351 DIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDN 389 (854)
Q Consensus 351 di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~ 389 (854)
+|..+..++...++++..+.-|-++..+....+.+.+..
T Consensus 85 ~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~ 123 (227)
T PRK14157 85 PLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQ 123 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666677766777777777777666655443
No 57
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.41 E-value=5.6e+02 Score=29.09 Aligned_cols=50 Identities=18% Similarity=0.343 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041601 349 EVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVLG 398 (854)
Q Consensus 349 e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v~ 398 (854)
|.++.++..+...++.+-..|...+++|+...+..+.++..|+.-.+++.
T Consensus 224 eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~ 273 (365)
T KOG2391|consen 224 EEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILK 273 (365)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 33333333333344444445555555555555555555555554444443
No 58
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=37.23 E-value=2.4e+02 Score=31.95 Aligned_cols=48 Identities=21% Similarity=0.404 Sum_probs=23.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 347 LAEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIV 394 (854)
Q Consensus 347 ~~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~ 394 (854)
.++..+..+..++...+..+.....++++|+.+++.-+..+++-+.++
T Consensus 239 ~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li 286 (344)
T PF12777_consen 239 EKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLI 286 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHH
Confidence 344444555555555555555555555555555544444444444433
No 59
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=36.33 E-value=4e+02 Score=25.68 Aligned_cols=67 Identities=13% Similarity=0.195 Sum_probs=44.2
Q ss_pred hhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 041601 335 PELQHNVRLIVDLAEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVLGQIE 401 (854)
Q Consensus 335 pEL~hNl~llv~~~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v~~~~ 401 (854)
.-+...|.--+...|.++..+..++.....+...|..|.-++....+..+.....+..+-..+..++
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~ 81 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQ 81 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777888899998888888877766667777776666666555544444444444444443
No 60
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=36.31 E-value=1.3e+02 Score=36.61 Aligned_cols=49 Identities=14% Similarity=0.336 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 348 AEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNV 396 (854)
Q Consensus 348 ~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~ 396 (854)
|.+.|..+...+....+.+..+..+...|...-...+.++..+......
T Consensus 99 a~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~ 147 (560)
T PF06160_consen 99 AKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRE 147 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555444444444444444444333
No 61
>PRK14159 heat shock protein GrpE; Provisional
Probab=36.04 E-value=3.5e+02 Score=27.84 Aligned_cols=86 Identities=16% Similarity=0.219 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhhccCC--CCcccHHHHHHHHHHHHH
Q 041601 352 IQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDN------METIVNVLGQIEKGHT--LGTLTLVSLANYFSDLHK 423 (854)
Q Consensus 352 i~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~------l~~~~~~v~~~~~~~~--~~~~tl~~~~~~f~~L~~ 423 (854)
|..+..++...++++..+..|.+++.+....+.+.+.. +..+|..++.|..... ...-....+.+-++.+..
T Consensus 32 i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~~~~~~~~~~~l~~Gv~mi~k 111 (176)
T PRK14159 32 QNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAMAYANESFAKDLLDVLDALEAAVNVECHDEISLKIKEGVQNTLD 111 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 34455566666777777777777777777777665443 3455555555543211 111123445556666666
Q ss_pred hhHHHHhhCChHHH
Q 041601 424 RFANDYKLCNLASI 437 (854)
Q Consensus 424 ~~~~ey~~~~L~~l 437 (854)
+|-.-+..+||..+
T Consensus 112 ~l~~vL~k~Gv~~I 125 (176)
T PRK14159 112 LFLKKLEKHGVALI 125 (176)
T ss_pred HHHHHHHHCcCEec
Confidence 67666777777544
No 62
>PRK14149 heat shock protein GrpE; Provisional
Probab=35.89 E-value=4.5e+02 Score=27.43 Aligned_cols=79 Identities=11% Similarity=0.085 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhhccCC--CCcccHHHHHHHHHHHHHhhHHHHh
Q 041601 359 LNNARETALSLQKEKENLEKTAAEQKQQLDN------METIVNVLGQIEKGHT--LGTLTLVSLANYFSDLHKRFANDYK 430 (854)
Q Consensus 359 ~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~------l~~~~~~v~~~~~~~~--~~~~tl~~~~~~f~~L~~~~~~ey~ 430 (854)
+...++++..+.-|.+++.+....+.+.+.. +..+|.+++.|..... ........+..-++.+...|-.-+.
T Consensus 52 ~~elkd~~lR~~AefEN~rKR~~kE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~~~~~~~~l~~Gv~mi~k~l~~vL~ 131 (191)
T PRK14149 52 YKEMHEKYLRVHADFENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGALKSAAEVDKESALTKGLELTMEKLHEVLA 131 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccccchHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444433322 3344555554432110 1112345566666666677777777
Q ss_pred hCChHHH
Q 041601 431 LCNLASI 437 (854)
Q Consensus 431 ~~~L~~l 437 (854)
.+|+..+
T Consensus 132 k~GV~~I 138 (191)
T PRK14149 132 RHGIEGI 138 (191)
T ss_pred HCCCEEe
Confidence 7777544
No 63
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=35.48 E-value=3.3e+02 Score=29.39 Aligned_cols=58 Identities=16% Similarity=0.303 Sum_probs=32.6
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 340 NVRLIVDLAEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVL 397 (854)
Q Consensus 340 Nl~llv~~~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v 397 (854)
+.+..++.+++++.++.+.+-..+.....|+.+..+++..+...++++++.+..+..+
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v 85 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAV 85 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444455555666565555555555555555555555555555555555555555443
No 64
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=35.47 E-value=2.3e+02 Score=34.48 Aligned_cols=51 Identities=16% Similarity=0.307 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041601 348 AEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVLG 398 (854)
Q Consensus 348 ~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v~ 398 (854)
|...|..+...+....+++..+..+...|...-+..+.++..+......+.
T Consensus 103 a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~r 153 (569)
T PRK04778 103 AKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELR 153 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666666666665555555555555555555444443
No 65
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=35.18 E-value=3.1e+02 Score=27.23 Aligned_cols=56 Identities=21% Similarity=0.417 Sum_probs=38.4
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 340 NVRLIVDLAEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVN 395 (854)
Q Consensus 340 Nl~llv~~~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~ 395 (854)
|.+--|..-+..|..+..+++...-....|..|++.|.+.+...+.+|..|+....
T Consensus 49 n~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~ 104 (140)
T PF10473_consen 49 NSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNS 104 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44444555566666677777777777777778888887777777777777765543
No 66
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=34.89 E-value=2.5e+02 Score=34.08 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhhHHHHh
Q 041601 411 LVSLANYFSDLHKRFANDYK 430 (854)
Q Consensus 411 l~~~~~~f~~L~~~~~~ey~ 430 (854)
+.........|..+..+++.
T Consensus 476 i~~~~~~I~~L~~~L~e~~~ 495 (652)
T COG2433 476 IRARDRRIERLEKELEEKKK 495 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555543
No 67
>PRK04863 mukB cell division protein MukB; Provisional
Probab=34.46 E-value=4e+02 Score=36.39 Aligned_cols=72 Identities=14% Similarity=0.145 Sum_probs=37.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcccHHHHHHH
Q 041601 346 DLAEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVLGQIEKGHTLGTLTLVSLANY 417 (854)
Q Consensus 346 ~~~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v~~~~~~~~~~~~tl~~~~~~ 417 (854)
..++..+..+..++....+++..|+.+...+...+...+.++..++..+..++..+.-.....+|.++|...
T Consensus 372 eeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~ 443 (1486)
T PRK04863 372 EEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDW 443 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 333444444444444445555555555555555555566666666666666555544323346665555433
No 68
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=34.46 E-value=3.3e+02 Score=26.47 Aligned_cols=18 Identities=17% Similarity=-0.009 Sum_probs=8.4
Q ss_pred hhhHHHHHHHhHHHHHHH
Q 041601 338 QHNVRLIVDLAEVDIQKI 355 (854)
Q Consensus 338 ~hNl~llv~~~e~di~~~ 355 (854)
...+-.....|+..+.++
T Consensus 48 ~e~~l~~l~~~e~~~~k~ 65 (139)
T PF05615_consen 48 YERLLKELAQFEFSILKS 65 (139)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444455555444443
No 69
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=34.44 E-value=3.1e+02 Score=27.10 Aligned_cols=6 Identities=17% Similarity=0.185 Sum_probs=2.2
Q ss_pred HhHHHH
Q 041601 347 LAEVDI 352 (854)
Q Consensus 347 ~~e~di 352 (854)
.+++.+
T Consensus 18 ~~e~~~ 23 (143)
T PF12718_consen 18 ELEAKV 23 (143)
T ss_pred HHHHHH
Confidence 333333
No 70
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=34.10 E-value=4.9e+02 Score=27.94 Aligned_cols=9 Identities=11% Similarity=0.265 Sum_probs=4.1
Q ss_pred HHHhHhhhc
Q 041601 466 VLMWKNVLQ 474 (854)
Q Consensus 466 i~~Wk~lL~ 474 (854)
+..++.++.
T Consensus 133 l~~L~~~l~ 141 (251)
T PF11932_consen 133 LARLRAMLD 141 (251)
T ss_pred HHHHHHhhh
Confidence 344444444
No 71
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=33.19 E-value=3.3e+02 Score=29.55 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=20.9
Q ss_pred ChHHHHHHHhhhHHHHhhcCCCCCCCCchhH
Q 041601 433 NLASIACSFALPLFIRMFQGWDPLQNPSHKM 463 (854)
Q Consensus 433 ~L~~la~~~v~Pll~~~~~~WdPL~dP~~~~ 463 (854)
.-+.-++..++|-|...+..|.+ -|.+++
T Consensus 213 r~a~e~Le~~~p~i~~~~~~~~~--k~~fg~ 241 (246)
T cd07618 213 RKALAVIEKVLPEIQAHQDKWME--KPAFGT 241 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc--CCCCCC
Confidence 34445567789999999999966 366554
No 72
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=33.15 E-value=2.2e+02 Score=28.85 Aligned_cols=53 Identities=17% Similarity=0.300 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 041601 348 AEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVLGQI 400 (854)
Q Consensus 348 ~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v~~~ 400 (854)
+|.||.....+....+-+...++.+...|...-+..+.++.+|+..++..+.+
T Consensus 75 sE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l 127 (159)
T PF05384_consen 75 SEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENL 127 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566555555555544554455545555555555555555555555544433
No 73
>PRK02119 hypothetical protein; Provisional
Probab=32.31 E-value=2.2e+02 Score=24.90 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 361 NARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVL 397 (854)
Q Consensus 361 ~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v 397 (854)
....+++-++.-.+.|++.+..+..+|++|+.-+..+
T Consensus 13 ~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 13 ELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444555555555555555555444433
No 74
>PRK09039 hypothetical protein; Validated
Probab=32.23 E-value=4.2e+02 Score=30.13 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041601 356 DKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVLG 398 (854)
Q Consensus 356 ~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v~ 398 (854)
.+++..++..+.....+...|+.+++..+.++..|+..++.++
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae 164 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASE 164 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444443
No 75
>PF02090 SPAM: Salmonella surface presentation of antigen gene type M protein; InterPro: IPR002954 The Salmonella typhimurium Surface Presentation of Antigens M gene (SpaM) is one of 12 that form a cluster responsible for invasion properties []. The gene product is required for entry by the bacterium into epithelial cells, and is thus considered to be a virulence factor []. Other Spa genes in the cluster are related to invasion (Inv) genes in similar Salmonella and Shigella species [], and flagella biosynthesis genes in Helicobacter pylori []. A homologue of this protein has been found recently in Salmonella enterica []. The protein, named InvI, is required by the organism to gain access to mammalian epithelial cells, and cellular mutants (InvI-) failed to successfully infect these cells. It has also been found that the inv-spa loci of this particular species encode for a type III protein secretion system, essential in the bacterium's host cell invasion process [].
Probab=32.08 E-value=5.2e+02 Score=25.70 Aligned_cols=55 Identities=13% Similarity=0.263 Sum_probs=36.7
Q ss_pred hhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041601 337 LQHNVRLIVDLAEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVLG 398 (854)
Q Consensus 337 L~hNl~llv~~~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v~ 398 (854)
+.||+..|...|+.-..+- ......|..+.+.|.++.+.-..++..|+.++....
T Consensus 3 ~L~ki~~L~~rc~~~~~rC-------e~~L~ql~~e~~~L~~ee~~~~~Q~~~L~~LL~~~r 57 (147)
T PF02090_consen 3 SLNKINRLLRRCEMFQSRC-------EQALLQLQREEQKLDAEEEAIEEQRAGLQSLLDTQR 57 (147)
T ss_pred hHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578888888887654443 334445566666666666666777777877777654
No 76
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=31.67 E-value=4.7e+02 Score=25.88 Aligned_cols=47 Identities=21% Similarity=0.384 Sum_probs=21.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 345 VDLAEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNME 391 (854)
Q Consensus 345 v~~~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~ 391 (854)
+...++.......++.....+...|+.+.+++...+...+..+....
T Consensus 23 ~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~ 69 (143)
T PF12718_consen 23 VKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESE 69 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34444444444444444444444455555554444444444433333
No 77
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=30.75 E-value=3e+02 Score=23.67 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041601 365 TALSLQKEKENLEKTAAEQKQQLDNMETIVNVLG 398 (854)
Q Consensus 365 ~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v~ 398 (854)
+++-++.-.+.|+..+..+..+|++|+..+..+.
T Consensus 12 ~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~ 45 (69)
T PF04102_consen 12 KLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLR 45 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555566666666666665555443
No 78
>PLN02678 seryl-tRNA synthetase
Probab=30.02 E-value=89 Score=36.80 Aligned_cols=32 Identities=28% Similarity=0.350 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 351 DIQKIDKDLNNARETALSLQKEKENLEKTAAE 382 (854)
Q Consensus 351 di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~ 382 (854)
.|..+++++|....++..|..++..+.+++..
T Consensus 34 ~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~ 65 (448)
T PLN02678 34 EVIALDKEWRQRQFELDSLRKEFNKLNKEVAK 65 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888888887754
No 79
>PF15011 CK2S: Casein Kinase 2 substrate
Probab=29.68 E-value=4.2e+02 Score=26.96 Aligned_cols=24 Identities=13% Similarity=0.438 Sum_probs=19.3
Q ss_pred CcccHHHHHHHHHHHHHhhHHHHh
Q 041601 407 GTLTLVSLANYFSDLHKRFANDYK 430 (854)
Q Consensus 407 ~~~tl~~~~~~f~~L~~~~~~ey~ 430 (854)
...|+++|.+.+..+-.-|..+|.
T Consensus 121 ~~PSlAdmLewl~di~r~y~~~yl 144 (168)
T PF15011_consen 121 VCPSLADMLEWLQDIERMYRSEYL 144 (168)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345788898999888888888883
No 80
>PRK14150 heat shock protein GrpE; Provisional
Probab=29.45 E-value=6.7e+02 Score=26.14 Aligned_cols=75 Identities=15% Similarity=0.227 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhhccCC---CCcccHHHHHHHHHHHHHhhHHHHhhCC
Q 041601 363 RETALSLQKEKENLEKTAAEQKQQLDN------METIVNVLGQIEKGHT---LGTLTLVSLANYFSDLHKRFANDYKLCN 433 (854)
Q Consensus 363 ~d~~~~L~~e~~~l~~~~~~e~~~i~~------l~~~~~~v~~~~~~~~---~~~~tl~~~~~~f~~L~~~~~~ey~~~~ 433 (854)
++++..+..|-+++.+....+.+.+.. +..+|..++.|..... ...-.+..+..-+.-+..++-.-+..+|
T Consensus 58 kd~~lR~~AefeN~rkR~~kE~~~~~~~a~~~~~~~lL~v~DnlerAl~~~~~~~~~~~~~~~Gv~mi~~~l~~~L~~~G 137 (193)
T PRK14150 58 RDSVLRARAEVENIRRRAEQDVEKAHKFALEKFANELLPVIDNLERALQAADKENEALKALIEGVELTLKSLLDTVAKFG 137 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHCC
Confidence 455555666666666666666555433 3355555555543211 1112345566666666677777777777
Q ss_pred hHHH
Q 041601 434 LASI 437 (854)
Q Consensus 434 L~~l 437 (854)
+..+
T Consensus 138 v~~i 141 (193)
T PRK14150 138 VEVV 141 (193)
T ss_pred Ceee
Confidence 7554
No 81
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=29.34 E-value=4.3e+02 Score=23.87 Aligned_cols=60 Identities=22% Similarity=0.398 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcccHHHHHHHHHHHHH
Q 041601 352 IQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVLGQIEKGHTLGTLTLVSLANYFSDLHK 423 (854)
Q Consensus 352 i~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v~~~~~~~~~~~~tl~~~~~~f~~L~~ 423 (854)
|.++..++...+++++.++.-.+.|+.+. .+.+.+ .|+.+|.. -.+|.++|..++...+.
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le~qk----~E~EN~-EIv~~VR~-------~~mtp~eL~~~L~~~~~ 62 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELEAQK----TEAENL-EIVQMVRS-------MKMTPEELAAFLRAMKS 62 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-HHHHHHHH-------cCCCHHHHHHHHHHHHh
Confidence 44555555555555555544333333322 222332 33444432 34688888888876653
No 82
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=29.31 E-value=3.9e+02 Score=30.69 Aligned_cols=23 Identities=35% Similarity=0.687 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041601 369 LQKEKENLEKTAAEQKQQLDNME 391 (854)
Q Consensus 369 L~~e~~~l~~~~~~e~~~i~~l~ 391 (854)
|+.|+..|.++++.-+++++.++
T Consensus 354 Lrkerd~L~keLeekkreleql~ 376 (442)
T PF06637_consen 354 LRKERDSLAKELEEKKRELEQLK 376 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 83
>PRK09039 hypothetical protein; Validated
Probab=29.05 E-value=2.6e+02 Score=31.75 Aligned_cols=55 Identities=11% Similarity=0.225 Sum_probs=30.4
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 340 NVRLIVDLAEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIV 394 (854)
Q Consensus 340 Nl~llv~~~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~ 394 (854)
+.+.+...+..++..+.+++...+.+...|+.+...+++.....+.+|+.|+.-+
T Consensus 127 ~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L 181 (343)
T PRK09039 127 SEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL 181 (343)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555556666666666666666666555555555555555555554433
No 84
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=28.89 E-value=5.6e+02 Score=28.76 Aligned_cols=46 Identities=13% Similarity=0.174 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041601 354 KIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVLGQ 399 (854)
Q Consensus 354 ~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v~~ 399 (854)
..+.++...+.....++.+++.+...++...+++..++.-+..+++
T Consensus 215 ~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 215 KLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444444444444333
No 85
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=28.83 E-value=3.1e+02 Score=23.62 Aligned_cols=50 Identities=16% Similarity=0.190 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041601 349 EVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVLG 398 (854)
Q Consensus 349 e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v~ 398 (854)
++.|..+..++-+..+.+..|....-+-.+.++..+.++..|..-+..+.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566666677777777777766666666667766766666665555443
No 86
>PRK14164 heat shock protein GrpE; Provisional
Probab=28.82 E-value=4.1e+02 Score=28.31 Aligned_cols=48 Identities=13% Similarity=0.312 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhh
Q 041601 354 KIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDN------METIVNVLGQIE 401 (854)
Q Consensus 354 ~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~------l~~~~~~v~~~~ 401 (854)
.+..++...++++..+.-|-+++.+..+.+.+.+.. ++.+|.+++.|.
T Consensus 81 ~le~el~el~d~llR~~AE~eN~RkR~~rE~e~~~~~a~~~~~~~LLpVlDnLe 134 (218)
T PRK14164 81 TVEAQLAERTEDLQRVTAEYANYRRRTERERQAIIETAKAGVATDLLPILDDLD 134 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Confidence 334444444455555555555555555444443322 334455555443
No 87
>PRK10884 SH3 domain-containing protein; Provisional
Probab=28.42 E-value=3.8e+02 Score=28.25 Aligned_cols=37 Identities=11% Similarity=0.157 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhhHHHHhhCCh----HHHHHHHhhhHHH
Q 041601 411 LVSLANYFSDLHKRFANDYKLCNL----ASIACSFALPLFI 447 (854)
Q Consensus 411 l~~~~~~f~~L~~~~~~ey~~~~L----~~la~~~v~Pll~ 447 (854)
++.+....+.++..---+|=+||= ..+.+++|+|.|.
T Consensus 155 ~~~l~~~~~~~~~~~~~~wf~~Gg~v~~~GlllGlilp~l~ 195 (206)
T PRK10884 155 VDAANLQLDDKQRTIIMQWFMYGGGVAGIGLLLGLLLPHLI 195 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc
Confidence 344444555566555556656763 4445666777654
No 88
>PRK11637 AmiB activator; Provisional
Probab=28.04 E-value=3.3e+02 Score=31.66 Aligned_cols=7 Identities=0% Similarity=0.221 Sum_probs=4.1
Q ss_pred cCCeeee
Q 041601 792 HELLFKP 798 (854)
Q Consensus 792 ~gllf~P 798 (854)
.||.|..
T Consensus 330 ~Gi~i~~ 336 (428)
T PRK11637 330 KGMVIGA 336 (428)
T ss_pred CCEEeec
Confidence 4666654
No 89
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=27.86 E-value=5.9e+02 Score=24.98 Aligned_cols=16 Identities=13% Similarity=0.372 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhhHHHH
Q 041601 414 LANYFSDLHKRFANDY 429 (854)
Q Consensus 414 ~~~~f~~L~~~~~~ey 429 (854)
+...+...+..|..|.
T Consensus 120 lk~~~~~~~tq~~~e~ 135 (151)
T PF11559_consen 120 LKNQLQQRKTQYEHEL 135 (151)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344455555565555
No 90
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=27.43 E-value=6.3e+02 Score=27.86 Aligned_cols=59 Identities=17% Similarity=0.149 Sum_probs=30.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 041601 343 LIVDLAEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVLGQIE 401 (854)
Q Consensus 343 llv~~~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v~~~~ 401 (854)
.-++.+++.+.....++.........++.+...++..++..+.++...+.-++....+.
T Consensus 80 ~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~ 138 (334)
T TIGR00998 80 LALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVPLF 138 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33556666666666655554444444555555555555555554444444444444433
No 91
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=26.91 E-value=3.2e+02 Score=28.59 Aligned_cols=40 Identities=20% Similarity=0.397 Sum_probs=21.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 345 VDLAEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQK 384 (854)
Q Consensus 345 v~~~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~ 384 (854)
+.+.|++..++..++-+|+.+...+++|.+++...+..+.
T Consensus 136 t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l~eE~ 175 (192)
T PF09727_consen 136 TNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQLEEER 175 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555554444433
No 92
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=26.70 E-value=8.5e+02 Score=30.04 Aligned_cols=11 Identities=27% Similarity=0.682 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 041601 349 EVDIQKIDKDL 359 (854)
Q Consensus 349 e~di~~~~~~~ 359 (854)
+.+|..+++++
T Consensus 404 e~el~~l~~~l 414 (650)
T TIGR03185 404 EEELAEVDKKI 414 (650)
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 93
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=26.42 E-value=4.9e+02 Score=26.44 Aligned_cols=49 Identities=12% Similarity=0.243 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 041601 352 IQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVLGQI 400 (854)
Q Consensus 352 i~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v~~~ 400 (854)
-.++.+++...+.+...|+.|.+.|.+....-++..+.|-.||+...++
T Consensus 106 ~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl 154 (161)
T TIGR02894 106 NERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKL 154 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666677777777777776666666666666666554443
No 94
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=26.32 E-value=4.6e+02 Score=27.43 Aligned_cols=16 Identities=25% Similarity=0.273 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 041601 367 LSLQKEKENLEKTAAE 382 (854)
Q Consensus 367 ~~L~~e~~~l~~~~~~ 382 (854)
..++.|.+.|.+.+..
T Consensus 65 ~~a~~e~~eL~k~L~~ 80 (201)
T PF13851_consen 65 KKAEEEVEELRKQLKN 80 (201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 95
>PRK10884 SH3 domain-containing protein; Provisional
Probab=26.18 E-value=7.9e+02 Score=25.90 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041601 369 LQKEKENLEKTAAEQKQQLDNME 391 (854)
Q Consensus 369 L~~e~~~l~~~~~~e~~~i~~l~ 391 (854)
|+.|-++|.++++..+.+++.++
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~ 159 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAAN 159 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444333
No 96
>PRK11637 AmiB activator; Provisional
Probab=25.99 E-value=3.5e+02 Score=31.53 Aligned_cols=8 Identities=0% Similarity=0.181 Sum_probs=3.6
Q ss_pred EEEEecCC
Q 041601 825 MLYAQKPE 832 (854)
Q Consensus 825 vv~~~~~~ 832 (854)
+|.+..++
T Consensus 362 ~vii~hg~ 369 (428)
T PRK11637 362 VVVVEHGK 369 (428)
T ss_pred EEEEEeCC
Confidence 44444433
No 97
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=25.90 E-value=1.2e+02 Score=35.52 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 350 VDIQKIDKDLNNARETALSLQKEKENLEKTAAE 382 (854)
Q Consensus 350 ~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~ 382 (854)
..|..+++++|....+...|+.|+..+.+++..
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~ 62 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGK 62 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888888888888888888887755
No 98
>KOG3123 consensus Diphthine synthase [Translation, ribosomal structure and biogenesis]
Probab=25.75 E-value=63 Score=33.97 Aligned_cols=59 Identities=20% Similarity=0.433 Sum_probs=36.7
Q ss_pred ccHHHHHHHHHHHcCCeeeeCCCCcc------CCcceeeecc-EEEEEeCCCcEEEEecCCcccccCHHHHHHHhhh
Q 041601 779 MTLKEVIEAYAQQHELLFKPKPGRMH------NGQQIYGFGN-ISIYVDSLNQMLYAQKPEGWTPVTLDTLLKMHHN 848 (854)
Q Consensus 779 ~sFKdvVE~~c~e~gllf~P~~gr~~------~G~qlY~fG~-v~iyId~~~~vv~~~~~~~w~PisL~~Ll~~~~~ 848 (854)
+|--|+|= .|.+.||-..-.-|-.- =|.|+|.||. |++ |.| ..+|+|.|.-+=+...+.
T Consensus 90 TTHsDlvl-RAk~~~ipv~vIHNASimNavG~CGLqlY~fGetVSi-------v~f---td~wrP~SfydkI~~Nr~ 155 (272)
T KOG3123|consen 90 TTHSDLVL-RAKELGIPVEVIHNASIMNAVGCCGLQLYNFGETVSI-------VFF---TDNWRPESFYDKIKENRQ 155 (272)
T ss_pred cchhhhhe-ehhhcCCCeEEEechHHHhhhccceeeeeccCcEEEE-------EEE---ccCcCchhHHHHHHHhhh
Confidence 34556553 57778887765433221 1899999995 442 223 248999999877665443
No 99
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=25.72 E-value=5e+02 Score=25.46 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 369 LQKEKENLEKTAAEQKQQLDNMETI 393 (854)
Q Consensus 369 L~~e~~~l~~~~~~e~~~i~~l~~~ 393 (854)
|+.+...+...+..++++++++...
T Consensus 99 l~~~~~~~~~~~k~~kee~~klk~~ 123 (151)
T PF11559_consen 99 LQKQLKSLEAKLKQEKEELQKLKNQ 123 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444433
No 100
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=25.68 E-value=4e+02 Score=22.33 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 348 AEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLD 388 (854)
Q Consensus 348 ~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~ 388 (854)
-..|+..+..+..++...+..|.-+......+.....++|+
T Consensus 8 Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 8 LSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433333333
No 101
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=25.66 E-value=9.3e+02 Score=28.05 Aligned_cols=23 Identities=22% Similarity=0.114 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 041601 348 AEVDIQKIDKDLNNARETALSLQ 370 (854)
Q Consensus 348 ~e~di~~~~~~~~~e~d~~~~L~ 370 (854)
...|+.-+...++.|+.+...||
T Consensus 242 ~~~e~~~~~~~LqEEr~R~erLE 264 (395)
T PF10267_consen 242 YQREYQFILEALQEERYRYERLE 264 (395)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Confidence 34445555555555555554443
No 102
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=25.63 E-value=5.3e+02 Score=25.22 Aligned_cols=21 Identities=14% Similarity=0.290 Sum_probs=16.6
Q ss_pred CCcccHHHHHHHHHHHHHhhH
Q 041601 406 LGTLTLVSLANYFSDLHKRFA 426 (854)
Q Consensus 406 ~~~~tl~~~~~~f~~L~~~~~ 426 (854)
+|.+++++|...|...|..|-
T Consensus 121 ~g~~d~~~Fl~~f~~~R~~yH 141 (150)
T PF07200_consen 121 DGEIDVDDFLKQFKEKRKLYH 141 (150)
T ss_dssp SSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 567788889888888887764
No 103
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=25.39 E-value=8.8e+02 Score=28.45 Aligned_cols=71 Identities=18% Similarity=0.261 Sum_probs=45.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcccHHHHHHHHHHHHHh
Q 041601 345 VDLAEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVLGQIEKGHTLGTLTLVSLANYFSDLHKR 424 (854)
Q Consensus 345 v~~~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v~~~~~~~~~~~~tl~~~~~~f~~L~~~ 424 (854)
.+..+++|.+..++++..+++...|+.+.+.++.++...+.++.+.+.=+..++ . .++++...+..|+.+
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~---~-------~I~~~~~~l~~l~~q 109 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLR---K-------QIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---h-------hHHHHHHHHHHHHHH
Confidence 456777888888888877777777777777777766666655554443333322 1 255566666666655
Q ss_pred h
Q 041601 425 F 425 (854)
Q Consensus 425 ~ 425 (854)
-
T Consensus 110 ~ 110 (420)
T COG4942 110 E 110 (420)
T ss_pred H
Confidence 4
No 104
>PRK10963 hypothetical protein; Provisional
Probab=25.13 E-value=4.4e+02 Score=27.93 Aligned_cols=58 Identities=12% Similarity=0.097 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcccHHHHHHHHHHHH
Q 041601 357 KDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVLGQIEKGHTLGTLTLVSLANYFSDLH 422 (854)
Q Consensus 357 ~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v~~~~~~~~~~~~tl~~~~~~f~~L~ 422 (854)
+++...|++...|+.+...|-.....-..-.+++..+.-.+-. .-+++++..++..+.
T Consensus 44 rQ~~~LR~r~~~Le~~l~~Li~~A~~Ne~l~~~~~~l~l~Ll~--------a~~~~~l~~~L~~~~ 101 (223)
T PRK10963 44 WQMARQRNHIHVLEEEMTLLMEQAIANEDLFYRLLPLQSRLAA--------ADSLQDMLMRLHRWA 101 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHH
Confidence 4455566666666666666655544433444444444333322 225777777765443
No 105
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=25.11 E-value=6.5e+02 Score=28.27 Aligned_cols=35 Identities=23% Similarity=0.269 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 360 NNARETALSLQKEKENLEKTAAEQKQQLDNMETIV 394 (854)
Q Consensus 360 ~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~ 394 (854)
+..++.+..+..+.+.....++..+.+++.++..+
T Consensus 207 ~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I 241 (312)
T smart00787 207 DRAKEKLKKLLQEIMIKVKKLEELEEELQELESKI 241 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444333
No 106
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=24.84 E-value=5.6e+02 Score=26.69 Aligned_cols=88 Identities=15% Similarity=0.242 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhhcc----CCCCcccHHHHHHHHHH
Q 041601 351 DIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDN------METIVNVLGQIEKG----HTLGTLTLVSLANYFSD 420 (854)
Q Consensus 351 di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~------l~~~~~~v~~~~~~----~~~~~~tl~~~~~~f~~ 420 (854)
.|..+..++...++++..+..|.+++.++++.+.+.+.. +..+|..++.|... .+..... ..+..-|+.
T Consensus 44 ~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~k~a~e~~~~dlLpviDnlerAl~~~~~~~d~~-~~l~~Gvem 122 (193)
T COG0576 44 EIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAKKYAIEKFAKDLLPVIDNLERALEAAEDDKDPE-KALLEGVEM 122 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchH-HHHHHHHHH
Confidence 334444444445555555555555555555444443322 23445555544422 1111111 346666777
Q ss_pred HHHhhHHHHhhCChHHHHH
Q 041601 421 LHKRFANDYKLCNLASIAC 439 (854)
Q Consensus 421 L~~~~~~ey~~~~L~~la~ 439 (854)
+..++-.-+..|||..+-.
T Consensus 123 ~~~~l~~~L~k~Gv~~i~~ 141 (193)
T COG0576 123 TLDQLLDALEKLGVEEIGP 141 (193)
T ss_pred HHHHHHHHHHHCCCEEeCC
Confidence 7777777777788866543
No 107
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=24.76 E-value=4.6e+02 Score=22.65 Aligned_cols=50 Identities=16% Similarity=0.300 Sum_probs=32.6
Q ss_pred hhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 337 LQHNVRLIVDLAEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNM 390 (854)
Q Consensus 337 L~hNl~llv~~~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l 390 (854)
|.+-+..|+..|++ +.++=+..+.+...+..|...|.+..+....+|+.|
T Consensus 5 Le~kle~Li~~~~~----L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 5 LAAQVEHLLEYLER----LKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777753 444444566777788888888887777766555544
No 108
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=24.49 E-value=4.3e+02 Score=26.32 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=35.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041601 345 VDLAEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVLG 398 (854)
Q Consensus 345 v~~~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v~ 398 (854)
++.+-....++.+++....+++..|+.|..+++..++...+.|+.|+.=.....
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~ 75 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALE 75 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344566677777777778888888877777777777777765555443
No 109
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.48 E-value=2.9e+02 Score=21.94 Aligned_cols=36 Identities=28% Similarity=0.339 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 349 EVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQK 384 (854)
Q Consensus 349 e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~ 384 (854)
|.|...+.......+....+|.+|.+.|..++....
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555566666666666655554433
No 110
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=24.42 E-value=4.6e+02 Score=33.83 Aligned_cols=94 Identities=18% Similarity=0.217 Sum_probs=54.0
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHh
Q 041601 340 NVRLIVDLAEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNM---------------------ETIVNVLG 398 (854)
Q Consensus 340 Nl~llv~~~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l---------------------~~~~~~v~ 398 (854)
||.+=++.-|..|.+...++...++....|..|.++|.++.......+.+- +.+..-+.
T Consensus 412 nLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~ik 491 (1195)
T KOG4643|consen 412 NLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIK 491 (1195)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777888888888888888877777777777766554333222221 11112222
Q ss_pred hhhccCCCCcccHHHHHHHHHHHHHhhHHHHhhCC
Q 041601 399 QIEKGHTLGTLTLVSLANYFSDLHKRFANDYKLCN 433 (854)
Q Consensus 399 ~~~~~~~~~~~tl~~~~~~f~~L~~~~~~ey~~~~ 433 (854)
.|.....+..+.+.-+...|..|+.+|-..-..|.
T Consensus 492 nlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye 526 (1195)
T KOG4643|consen 492 NLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYE 526 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221222333456667777777777766544343
No 111
>PRK10325 heat shock protein GrpE; Provisional
Probab=24.21 E-value=6.1e+02 Score=26.53 Aligned_cols=75 Identities=12% Similarity=0.218 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhhccCC---CCcccHHHHHHHHHHHHHhhHHHHhhCC
Q 041601 363 RETALSLQKEKENLEKTAAEQKQQLDN------METIVNVLGQIEKGHT---LGTLTLVSLANYFSDLHKRFANDYKLCN 433 (854)
Q Consensus 363 ~d~~~~L~~e~~~l~~~~~~e~~~i~~------l~~~~~~v~~~~~~~~---~~~~tl~~~~~~f~~L~~~~~~ey~~~~ 433 (854)
++++..+..|-+++.+....+.+.+.. +..+|.+++.|..... ...-.+..+..-++.+...|-.-+..+|
T Consensus 59 ~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~lLpv~DnlerAl~~~~~~~~~~~~l~~Gv~m~~~~l~~~L~~~G 138 (197)
T PRK10325 59 RDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRALEVADKANPDMSAMVEGIELTLKSMLDVVRKFG 138 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHCc
Confidence 455555666666666666666555433 4455555555543211 1111345566666666666666666777
Q ss_pred hHHH
Q 041601 434 LASI 437 (854)
Q Consensus 434 L~~l 437 (854)
+..+
T Consensus 139 v~~i 142 (197)
T PRK10325 139 VEVI 142 (197)
T ss_pred Ceee
Confidence 7544
No 112
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=24.08 E-value=5.9e+02 Score=27.57 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=24.2
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 340 NVRLIVDLAEVDIQKIDKDLNNARET---------ALSLQKEKENLEKTAAEQKQQLDN 389 (854)
Q Consensus 340 Nl~llv~~~e~di~~~~~~~~~e~d~---------~~~L~~e~~~l~~~~~~e~~~i~~ 389 (854)
++..-|..-+.+|..+.+++...++. +.+|.+|...+.+.....+.+|..
T Consensus 56 ~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~ 114 (239)
T COG1579 56 DLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAE 114 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666666666655543322 234444444444444444433333
No 113
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=23.90 E-value=1.3e+02 Score=35.09 Aligned_cols=32 Identities=19% Similarity=0.353 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 351 DIQKIDKDLNNARETALSLQKEKENLEKTAAE 382 (854)
Q Consensus 351 di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~ 382 (854)
.|..++.+++....++..|+.++..+.+++..
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQ 60 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888888888888888887754
No 114
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=23.61 E-value=1.6e+02 Score=23.91 Aligned_cols=29 Identities=24% Similarity=0.462 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCcccHHHHHHHHHH
Q 041601 385 QQLDNMETIVNVLGQIEKGHTLGTLTLVSLANYFSD 420 (854)
Q Consensus 385 ~~i~~l~~~~~~v~~~~~~~~~~~~tl~~~~~~f~~ 420 (854)
+.+.+|+.|+..|+ ++.++|++....|++
T Consensus 3 e~~~~Le~Iv~~Le-------~~~~sLdes~~lyee 31 (53)
T PF02609_consen 3 EAMERLEEIVEKLE-------SGELSLDESLKLYEE 31 (53)
T ss_dssp HHHHHHHHHHHHHH-------TT-S-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------cCCCCHHHHHHHHHH
Confidence 34566666666654 567888888777754
No 115
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=23.61 E-value=3e+02 Score=25.01 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=27.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 341 VRLIVDLAEVDIQKIDKDLNNA---RETALSLQKEKENLEKTAAEQKQQLDNM 390 (854)
Q Consensus 341 l~llv~~~e~di~~~~~~~~~e---~d~~~~L~~e~~~l~~~~~~e~~~i~~l 390 (854)
+.--+..|..++.+++.+++.. -+....|+.|+..+.+.+..-++++..|
T Consensus 10 lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~L 62 (85)
T PF15188_consen 10 LEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLL 62 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 3344566677777777777642 2344456655555555554444444433
No 116
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.15 E-value=2.5e+02 Score=33.81 Aligned_cols=49 Identities=16% Similarity=0.279 Sum_probs=25.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 345 VDLAEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIV 394 (854)
Q Consensus 345 v~~~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~ 394 (854)
|....++++.++ .....+.....|++|.++..++++...+++..++.+|
T Consensus 434 v~~~~~~VQe~~-~Y~g~ekk~n~LE~e~kn~~~ev~kls~ei~~ie~~l 482 (758)
T COG4694 434 VNEFKSDVQEYN-KYCGLEKKINNLEKEIKNNQEEVKKLSNEIKEIEKFL 482 (758)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 333344444444 3344444455566666666666666555555555555
No 117
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.11 E-value=1.5e+02 Score=26.17 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCcccHHHHHHHHHH
Q 041601 385 QQLDNMETIVNVLGQIEKGHTLGTLTLVSLANYFSD 420 (854)
Q Consensus 385 ~~i~~l~~~~~~v~~~~~~~~~~~~tl~~~~~~f~~ 420 (854)
+.+.+|+.|+..++ ++.++|++....|++
T Consensus 8 eal~~LE~IV~~LE-------~g~l~Leesl~lyee 36 (75)
T PRK14066 8 TALKKLEEVVKKLE-------GGELSLDDSLKAFEE 36 (75)
T ss_pred HHHHHHHHHHHHHH-------CCCCCHHHHHHHHHH
Confidence 45666777766654 688899998888865
No 118
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=22.76 E-value=6.1e+02 Score=27.21 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 362 ARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVL 397 (854)
Q Consensus 362 e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v 397 (854)
.+.....|..|+....++|..-...|+.|+.++.-.
T Consensus 37 ~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa 72 (230)
T PF10146_consen 37 YRKEMEELLQERMAHVEELRQINQDINTLENIIKQA 72 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555566655566666666665543
No 119
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=22.57 E-value=9.3e+02 Score=25.79 Aligned_cols=25 Identities=40% Similarity=0.407 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 362 ARETALSLQKEKENLEKTAAEQKQQ 386 (854)
Q Consensus 362 e~d~~~~L~~e~~~l~~~~~~e~~~ 386 (854)
++++...+..|++.|.++++..+.+
T Consensus 140 ~kekl~E~~~EkeeL~~eleele~e 164 (290)
T COG4026 140 LKEKLEELQKEKEELLKELEELEAE 164 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444454444444444333
No 120
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=22.55 E-value=4.6e+02 Score=31.99 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=9.2
Q ss_pred cHHHHHHHHHHHHHhhH
Q 041601 410 TLVSLANYFSDLHKRFA 426 (854)
Q Consensus 410 tl~~~~~~f~~L~~~~~ 426 (854)
..++|..-|..|+.-+.
T Consensus 496 ~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 496 RVEELERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45556666655554443
No 121
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=22.46 E-value=8.4e+02 Score=26.73 Aligned_cols=43 Identities=16% Similarity=0.319 Sum_probs=20.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 345 VDLAEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNM 390 (854)
Q Consensus 345 v~~~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l 390 (854)
+..++++++....+. ......|+++.+.|...+....+++..|
T Consensus 65 l~~ak~eLqe~eek~---e~~l~~Lq~ql~~l~akI~k~~~el~~L 107 (258)
T PF15397_consen 65 LQQAKAELQEWEEKE---ESKLSKLQQQLEQLDAKIQKTQEELNFL 107 (258)
T ss_pred HHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555543332 2233445555555555554444444443
No 122
>PRK00846 hypothetical protein; Provisional
Probab=22.36 E-value=5.6e+02 Score=22.84 Aligned_cols=48 Identities=10% Similarity=0.149 Sum_probs=27.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 345 VDLAEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMET 392 (854)
Q Consensus 345 v~~~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~ 392 (854)
-+..++.|..+.-++-+-.+.+..|....-+....++..+.++..|..
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~ 55 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 55 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666655555555555555544444443
No 123
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.06 E-value=1.6e+02 Score=25.95 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCcccHHHHHHHHHH
Q 041601 385 QQLDNMETIVNVLGQIEKGHTLGTLTLVSLANYFSD 420 (854)
Q Consensus 385 ~~i~~l~~~~~~v~~~~~~~~~~~~tl~~~~~~f~~ 420 (854)
+.+++|+.|+..|+ ++.++|++....|++
T Consensus 10 e~l~~LE~IV~~LE-------~~~l~Leesl~~ye~ 38 (75)
T PRK14064 10 EAIAELETIVEALE-------NGSASLEDSLDMYQK 38 (75)
T ss_pred HHHHHHHHHHHHHH-------CCCCCHHHHHHHHHH
Confidence 45666777766654 688899988887764
No 124
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=22.02 E-value=5.2e+02 Score=24.14 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 364 ETALSLQKEKENLEKTAAEQKQQLDNMET 392 (854)
Q Consensus 364 d~~~~L~~e~~~l~~~~~~e~~~i~~l~~ 392 (854)
+....|+-+..+++.++.....+++.+..
T Consensus 65 ~dv~~L~l~l~el~G~~~~l~~~l~~v~~ 93 (106)
T PF10805_consen 65 DDVHDLQLELAELRGELKELSARLQGVSH 93 (106)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 125
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=21.99 E-value=4.9e+02 Score=23.15 Aligned_cols=51 Identities=24% Similarity=0.328 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Q 041601 348 AEVDIQKIDKDLNNARETALSLQKEKE---NLEKTAAEQKQQLDNMETIVNVLG 398 (854)
Q Consensus 348 ~e~di~~~~~~~~~e~d~~~~L~~e~~---~l~~~~~~e~~~i~~l~~~~~~v~ 398 (854)
-.+||..++.+....+.+...|+.-.. .|.+.++....++..++.-+..|.
T Consensus 9 Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~ 62 (75)
T PF05531_consen 9 IRQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQ 62 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777776654443 366666666666666665554444
No 126
>PRK02793 phi X174 lysis protein; Provisional
Probab=21.53 E-value=4.9e+02 Score=22.69 Aligned_cols=46 Identities=11% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 352 IQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVL 397 (854)
Q Consensus 352 i~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v 397 (854)
...+..++.....+++-++.-.+.|++.+..+..+|++|+.-+..|
T Consensus 3 ~~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 3 DSSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 127
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=21.49 E-value=4.4e+02 Score=22.42 Aligned_cols=42 Identities=19% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 345 VDLAEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQ 386 (854)
Q Consensus 345 v~~~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~ 386 (854)
+..+..+-+.+..+++....+...|..+.+.|.++++..+.+
T Consensus 20 L~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 20 LTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 128
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.32 E-value=3e+02 Score=32.29 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhccCCCCcccHHHHHHHHHHHHHhhH
Q 041601 349 EVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQ-LDNMETIVNVLGQIEKGHTLGTLTLVSLANYFSDLHKRFA 426 (854)
Q Consensus 349 e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~-i~~l~~~~~~v~~~~~~~~~~~~tl~~~~~~f~~L~~~~~ 426 (854)
-.+|..++.+++....+...|++++..+.+++.....+ .+....+++.+..+......-+..++++...+..+...+|
T Consensus 28 ~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll~ip 106 (429)
T COG0172 28 VDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTLLLTIP 106 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCC
Confidence 34667888899988888888988888888887632211 1122333333333333222233345556555655555554
No 129
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=21.29 E-value=1.8e+02 Score=25.07 Aligned_cols=29 Identities=34% Similarity=0.491 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCcccHHHHHHHHHH
Q 041601 385 QQLDNMETIVNVLGQIEKGHTLGTLTLVSLANYFSD 420 (854)
Q Consensus 385 ~~i~~l~~~~~~v~~~~~~~~~~~~tl~~~~~~f~~ 420 (854)
+.+++|+.|+..++ ++.++|++....|++
T Consensus 5 e~l~~Le~Iv~~LE-------~~~l~Leesl~lyee 33 (67)
T TIGR01280 5 EALSELEQIVQKLE-------SGDLALEEALNLFER 33 (67)
T ss_pred HHHHHHHHHHHHHH-------CCCCCHHHHHHHHHH
Confidence 45667777776664 678889888777764
No 130
>PRK04325 hypothetical protein; Provisional
Probab=21.10 E-value=4.9e+02 Score=22.79 Aligned_cols=45 Identities=20% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 353 QKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVL 397 (854)
Q Consensus 353 ~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v 397 (854)
..+..++-...-+++-++.-.+.|++.+..+..+|++|+.-+..|
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 131
>PF07217 Het-C: Heterokaryon incompatibility protein Het-C; InterPro: IPR010816 In filamentous fungi, het loci (for heterokaryon incompatibility) are believed to regulate self/nonself-recognition during vegetative growth. As filamentous fungi grow, hyphal fusion occurs within an individual colony to form a network. Hyphal fusion can occur also between different individuals to form a heterokaryon, in which genetically distinct nuclei occupy a common cytoplasm. However, heterokaryotic cells are viable only if the individuals involved have identical alleles at all het loci [].
Probab=21.02 E-value=9.7e+02 Score=29.29 Aligned_cols=77 Identities=14% Similarity=0.377 Sum_probs=46.1
Q ss_pred hhHHHHHHHH--hhhhcch--hHHHHhhhhhhHHHHHHhhhccCCCCCCCCcchhhhcchhhhhhh-HHHHHHHHHHHHH
Q 041601 513 PEQMLRFLES--WEKLLPS--SVLHTILDTVVLPKLTSAVDSWDPRRETVPIHVWVHPWLPLLGHK-LEGLYQMIRMKLS 587 (854)
Q Consensus 513 p~p~l~~l~~--W~plLP~--~i~~~ileqlIlPKL~~aV~~W~P~~~~~p~h~wL~PWlp~L~~~-l~~L~~~Ir~KL~ 587 (854)
.+|-|++|.. ...+|.+ --....+-+.++|++.. .|+..+ +++...|-.+|.+|-+. +..--..|++..-
T Consensus 461 sDPTHSmLSKDHFsNILNepAG~vA~~iv~~vVp~vv~---AWdd~~--vdv~~vl~~il~vfHHPa~rd~~~eiqr~Mf 535 (606)
T PF07217_consen 461 SDPTHSMLSKDHFSNILNEPAGRVASAIVKWVVPRVVY---AWDDPS--VDVDRVLNDILRVFHHPAFRDMNSEIQREMF 535 (606)
T ss_pred CCCchhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHH---HhCCCC--CCHHHHHHHHHHHcCCcccCCchhHHHHHHH
Confidence 4555666554 5555543 22333333778888765 587654 67777777777776642 3333566677767
Q ss_pred HhccccC
Q 041601 588 NVLDAWH 594 (854)
Q Consensus 588 ~~L~~W~ 594 (854)
.++..|-
T Consensus 536 ~~V~~W~ 542 (606)
T PF07217_consen 536 ETVEEWW 542 (606)
T ss_pred HHHHHHH
Confidence 7777773
No 132
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=20.56 E-value=7.9e+02 Score=23.97 Aligned_cols=8 Identities=13% Similarity=0.227 Sum_probs=4.3
Q ss_pred CCChhhhh
Q 041601 332 VPMPELQH 339 (854)
Q Consensus 332 ~~~pEL~h 339 (854)
+.+|.|++
T Consensus 28 ws~sD~M~ 35 (126)
T PF07889_consen 28 WSFSDLMF 35 (126)
T ss_pred CchhHHHH
Confidence 44566643
No 133
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=20.54 E-value=4.3e+02 Score=31.09 Aligned_cols=74 Identities=14% Similarity=0.204 Sum_probs=42.9
Q ss_pred cceEEecCCCccee-ecccc-cchhhhhhccCCCCChhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 301 VQKVIDMRGPQVRV-LTNLE-NLDAEEKARENDVPMPELQHNVRLIVDLAEVDIQKIDKDLNNARETALSLQKEKE 374 (854)
Q Consensus 301 ~~~IIDmtG~~~rv-ls~~~-~l~~~~~~~~~~~~~pEL~hNl~llv~~~e~di~~~~~~~~~e~d~~~~L~~e~~ 374 (854)
..+||=.-|=|.-+ +.++- .+.+++++..+...+|.....++.|..+...=...+.+.+.+.+++...|.+-..
T Consensus 225 ~iPvISAVGHEtD~tL~DfVAD~RApTPTaAAE~~vP~~~el~~~l~~~~~rL~~~~~~~l~~~~~~l~~l~~~l~ 300 (440)
T COG1570 225 RIPVISAVGHETDFTLADFVADLRAPTPTAAAELVVPDSAELLQQLDQLQRRLHRALRRLLDQKKQRLEHLARRLQ 300 (440)
T ss_pred CCCeEeecccCCCccHHHhhhhccCCCchHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34888888876533 23332 2555555444445566666666666666555555566666666666666655443
No 134
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=20.53 E-value=3.9e+02 Score=32.46 Aligned_cols=95 Identities=9% Similarity=0.135 Sum_probs=44.7
Q ss_pred ChhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcccHHH
Q 041601 334 MPELQHNVRLIVDLAEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVLGQIEKGHTLGTLTLVS 413 (854)
Q Consensus 334 ~pEL~hNl~llv~~~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v~~~~~~~~~~~~tl~~ 413 (854)
+|.+..+.-.....++..|..+..++..-.=-...++++.+.+...++...++...|..-...++.+-....--..+.+.
T Consensus 439 lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy~nRfr~~~~~ 518 (569)
T PRK04778 439 LPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQYANRYRSDNEE 518 (569)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHH
Confidence 55555555566666666666666666541111122333444444444444444444444444433221110001124566
Q ss_pred HHHHHHHHHHhhHHHH
Q 041601 414 LANYFSDLHKRFANDY 429 (854)
Q Consensus 414 ~~~~f~~L~~~~~~ey 429 (854)
+...|..-..-| .+|
T Consensus 519 V~~~f~~Ae~lF-~~~ 533 (569)
T PRK04778 519 VAEALNEAERLF-REY 533 (569)
T ss_pred HHHHHHHHHHHH-HhC
Confidence 666666655555 444
No 135
>PRK14142 heat shock protein GrpE; Provisional
Probab=20.09 E-value=3.6e+02 Score=28.82 Aligned_cols=17 Identities=6% Similarity=0.145 Sum_probs=9.0
Q ss_pred HHHhhHHHHhhCChHHH
Q 041601 421 LHKRFANDYKLCNLASI 437 (854)
Q Consensus 421 L~~~~~~ey~~~~L~~l 437 (854)
+..+|-.-++.+||..+
T Consensus 113 I~kqL~~iLek~GVe~I 129 (223)
T PRK14142 113 VADKLDSALTGLGLVAF 129 (223)
T ss_pred HHHHHHHHHHHCCCEEe
Confidence 34444555555676544
No 136
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=20.00 E-value=9e+02 Score=30.63 Aligned_cols=59 Identities=19% Similarity=0.214 Sum_probs=45.8
Q ss_pred hhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 335 PELQHNVRLIVDLAEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETI 393 (854)
Q Consensus 335 pEL~hNl~llv~~~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~ 393 (854)
.+....|..--++++.|.+.+.+.+++++....+|..+.++++++++.++.+|-+++..
T Consensus 350 ddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~ 408 (1265)
T KOG0976|consen 350 DDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQG 408 (1265)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 45555566667888888888888888888888888878888888888888888777654
No 137
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.00 E-value=1.1e+03 Score=25.31 Aligned_cols=42 Identities=19% Similarity=0.239 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 350 VDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNME 391 (854)
Q Consensus 350 ~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~ 391 (854)
..|..--..++++...+..++.|.+.|..+-....++|..+.
T Consensus 18 ~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~ 59 (230)
T PF10146_consen 18 NEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQIN 59 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555666666555544444333333333
Done!