Query 041601
Match_columns 854
No_of_seqs 297 out of 1056
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 14:59:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041601.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041601hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xu6_A MDV1 coiled coil; prote 67.7 15 0.00051 30.8 6.8 44 337-380 5-58 (72)
2 3he5_B Synzip2; heterodimeric 59.4 33 0.0011 25.7 6.5 36 358-393 11-46 (52)
3 2w6b_A RHO guanine nucleotide 57.4 30 0.001 27.3 6.4 37 361-397 14-50 (56)
4 4ani_A Protein GRPE; chaperone 55.9 1.4E+02 0.0049 30.1 13.1 90 348-437 64-161 (213)
5 3nmd_A CGMP dependent protein 54.1 26 0.00088 29.5 5.9 38 355-392 31-68 (72)
6 3uux_B Mitochondrial division 49.9 85 0.0029 32.2 10.2 62 336-397 160-224 (242)
7 2akf_A Coronin-1A; coiled coil 47.7 38 0.0013 23.3 4.8 27 369-395 4-30 (32)
8 2p22_A Suppressor protein STP2 43.8 2E+02 0.0069 28.1 11.5 14 416-429 112-125 (174)
9 1t3j_A Mitofusin 1; coiled coi 35.4 34 0.0011 30.4 4.0 28 375-402 51-78 (96)
10 3he5_B Synzip2; heterodimeric 32.6 1.4E+02 0.0047 22.3 6.2 30 353-382 20-49 (52)
11 3ghg_A Fibrinogen alpha chain; 30.9 2.7E+02 0.0093 31.8 11.3 49 355-403 115-164 (562)
12 2wvr_A Geminin; DNA replicatio 27.6 3.2E+02 0.011 27.3 9.9 40 363-402 121-160 (209)
13 3qh9_A Liprin-beta-2; coiled-c 26.7 3E+02 0.01 23.5 8.7 44 353-396 22-65 (81)
14 1kd8_A GABH AIV, GCN4 acid bas 25.2 1E+02 0.0034 22.3 4.2 28 369-396 6-33 (36)
15 3efg_A Protein SLYX homolog; x 24.3 2.6E+02 0.0089 23.6 7.6 41 358-398 15-55 (78)
16 4emc_A Monopolin complex subun 23.0 4.4E+02 0.015 26.0 9.9 48 354-401 38-85 (190)
17 3mtu_E Head morphogenesis prot 22.3 2.9E+02 0.01 23.4 7.3 34 359-392 32-65 (77)
18 1x8y_A Lamin A/C; structural p 21.7 3.8E+02 0.013 22.9 9.4 26 358-383 29-54 (86)
19 3e98_A GAF domain of unknown f 21.7 3.5E+02 0.012 27.7 9.7 54 357-418 72-125 (252)
20 1vp7_A Exodeoxyribonuclease VI 20.7 1.1E+02 0.0039 27.2 4.8 29 385-420 34-62 (100)
21 3q8t_A Beclin-1; autophagy, AT 20.2 3.9E+02 0.013 23.3 8.2 22 365-386 26-47 (96)
No 1
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=67.72 E-value=15 Score=30.80 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=27.8
Q ss_pred hhhhHHHHH---HHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 041601 337 LQHNVRLIV---DLAEVDIQKIDKDLNNAR-------ETALSLQKEKENLEKTA 380 (854)
Q Consensus 337 L~hNl~llv---~~~e~di~~~~~~~~~e~-------d~~~~L~~e~~~l~~~~ 380 (854)
+.|||.+|- .+|.++|..+|.++.+.+ ++.+.|+++...|+..+
T Consensus 5 ~~~~Leml~IrKnma~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l 58 (72)
T 2xu6_A 5 LVNSLEFLNIQKNSTMSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNL 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 357776553 679999999999887654 44455555444444333
No 2
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=59.40 E-value=33 Score=25.66 Aligned_cols=36 Identities=22% Similarity=0.474 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 358 DLNNARETALSLQKEKENLEKTAAEQKQQLDNMETI 393 (854)
Q Consensus 358 ~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~ 393 (854)
++...+.....|+++.++|++.+...+.+|.+|+.-
T Consensus 11 kiarlkkdnlqlerdeqnlekiianlrdeiarlene 46 (52)
T 3he5_B 11 KIARLKKDNLQLERDEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 333444455567777788888888888888777653
No 3
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=57.41 E-value=30 Score=27.30 Aligned_cols=37 Identities=14% Similarity=0.399 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 361 NARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVL 397 (854)
Q Consensus 361 ~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v 397 (854)
..+|+...|.+|-.+|.+.++.|+..-.+|+.++..+
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888999999999999999999999999887654
No 4
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=55.90 E-value=1.4e+02 Score=30.11 Aligned_cols=90 Identities=14% Similarity=0.238 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhhccCC--CCcccHHHHHHHHH
Q 041601 348 AEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDN------METIVNVLGQIEKGHT--LGTLTLVSLANYFS 419 (854)
Q Consensus 348 ~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~------l~~~~~~v~~~~~~~~--~~~~tl~~~~~~f~ 419 (854)
.+..|..+..++...++++..+.-|-+++.+....+...+.. +..+|.+++.|..... ...-.+..+..-+.
T Consensus 64 l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~~~~~~~~~~~l~eGve 143 (213)
T 4ani_A 64 AKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERALKIETDNEQAKSILQGME 143 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCCSCCSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 345566677777777888877878888888887777666544 3456666665543211 11224556666666
Q ss_pred HHHHhhHHHHhhCChHHH
Q 041601 420 DLHKRFANDYKLCNLASI 437 (854)
Q Consensus 420 ~L~~~~~~ey~~~~L~~l 437 (854)
.+...+-.-+..+||..+
T Consensus 144 mi~k~l~~~L~k~Gv~~I 161 (213)
T 4ani_A 144 MVYRSLVDALKKEGVEAI 161 (213)
T ss_dssp HHHHHHHHHHHHTTEECC
T ss_pred HHHHHHHHHHHHCCCEEe
Confidence 666666666666666433
No 5
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=54.14 E-value=26 Score=29.46 Aligned_cols=38 Identities=13% Similarity=0.140 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 355 IDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMET 392 (854)
Q Consensus 355 ~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~ 392 (854)
-+++++.-..++..|+.+....+.++...+.+++++++
T Consensus 31 K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 31 KIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555555556666666666666555555555555544
No 6
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=49.94 E-value=85 Score=32.24 Aligned_cols=62 Identities=16% Similarity=0.311 Sum_probs=38.7
Q ss_pred hhhhhHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 336 ELQHNVRLI---VDLAEVDIQKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVL 397 (854)
Q Consensus 336 EL~hNl~ll---v~~~e~di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v 397 (854)
++.|+|.+| -.+|..+|..|+.++.+.......+...+..|++.-..++..+..++.=++.+
T Consensus 160 ~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~ 224 (242)
T 3uux_B 160 TLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFL 224 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 456666654 37899999999999988766665555555555555444444444444443333
No 7
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=47.74 E-value=38 Score=23.27 Aligned_cols=27 Identities=26% Similarity=0.482 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 369 LQKEKENLEKTAAEQKQQLDNMETIVN 395 (854)
Q Consensus 369 L~~e~~~l~~~~~~e~~~i~~l~~~~~ 395 (854)
|+.|..+|+..+...++++++|++.+.
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666777777777777777776543
No 8
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=43.84 E-value=2e+02 Score=28.14 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=7.2
Q ss_pred HHHHHHHHhhHHHH
Q 041601 416 NYFSDLHKRFANDY 429 (854)
Q Consensus 416 ~~f~~L~~~~~~ey 429 (854)
.++..|...+.++.
T Consensus 112 ~l~~Qll~l~Aed~ 125 (174)
T 2p22_A 112 DGLNQLYNLVAQDY 125 (174)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555553
No 9
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=35.39 E-value=34 Score=30.38 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 041601 375 NLEKTAAEQKQQLDNMETIVNVLGQIEK 402 (854)
Q Consensus 375 ~l~~~~~~e~~~i~~l~~~~~~v~~~~~ 402 (854)
.|+.+++....+|++|+.+......+++
T Consensus 51 eL~~EI~~L~~eI~~LE~iqs~aK~LRn 78 (96)
T 1t3j_A 51 HLEEEIARLSKEIDQLEKMQNNSKLLRN 78 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3444455555666677777666665553
No 10
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=32.56 E-value=1.4e+02 Score=22.34 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 353 QKIDKDLNNARETALSLQKEKENLEKTAAE 382 (854)
Q Consensus 353 ~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~ 382 (854)
.++.+.-++...-++.|.-|..+|+.++..
T Consensus 20 lqlerdeqnlekiianlrdeiarlenevas 49 (52)
T 3he5_B 20 LQLERDEQNLEKIIANLRDEIARLENEVAS 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhhhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444455555555555555555443
No 11
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=30.94 E-value=2.7e+02 Score=31.75 Aligned_cols=49 Identities=10% Similarity=0.138 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhcc
Q 041601 355 IDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMET-IVNVLGQIEKG 403 (854)
Q Consensus 355 ~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~-~~~~v~~~~~~ 403 (854)
+.+++..+++++..--.-+..|+..|+.+..+|++||. |...|+.|+..
T Consensus 115 LRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgs 164 (562)
T 3ghg_A 115 LRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGS 164 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34444445555543335567778888888899999995 45567778754
No 12
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=27.63 E-value=3.2e+02 Score=27.28 Aligned_cols=40 Identities=10% Similarity=0.207 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 041601 363 RETALSLQKEKENLEKTAAEQKQQLDNMETIVNVLGQIEK 402 (854)
Q Consensus 363 ~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v~~~~~ 402 (854)
.+++..|+.|...|.++.+..++-++.++.+.++|+++..
T Consensus 121 h~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~ 160 (209)
T 2wvr_A 121 HKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNG 160 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555556666666666666666667777777776654
No 13
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=26.68 E-value=3e+02 Score=23.50 Aligned_cols=44 Identities=14% Similarity=0.268 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 353 QKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNV 396 (854)
Q Consensus 353 ~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~ 396 (854)
..+-.+++..+-++..|+.|+-+-+..+..-+++|..|+..++.
T Consensus 22 E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~ 65 (81)
T 3qh9_A 22 EELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVAL 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 35566777788888888888888888888888777777766643
No 14
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=25.18 E-value=1e+02 Score=22.30 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 369 LQKEKENLEKTAAEQKQQLDNMETIVNV 396 (854)
Q Consensus 369 L~~e~~~l~~~~~~e~~~i~~l~~~~~~ 396 (854)
|+-..+.|..+....+.++.||++++..
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 3333334444444444555666666544
No 15
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=24.26 E-value=2.6e+02 Score=23.61 Aligned_cols=41 Identities=10% Similarity=0.030 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041601 358 DLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVLG 398 (854)
Q Consensus 358 ~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v~ 398 (854)
++-...-+++-++.-.+.|+..+..+..+|++|+.-+..+.
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~ 55 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL 55 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555566677777777777777776666553
No 16
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=22.97 E-value=4.4e+02 Score=26.02 Aligned_cols=48 Identities=10% Similarity=0.233 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 041601 354 KIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVLGQIE 401 (854)
Q Consensus 354 ~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v~~~~ 401 (854)
..+.++...+.+..+|+.+.......+..+.+.|.-.+.+++.+..+.
T Consensus 38 ~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~LTGl~ 85 (190)
T 4emc_A 38 TKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEYLCNVR 85 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEE
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHHccCcE
Confidence 344555555666666666666666666667777777777777777664
No 17
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=22.29 E-value=2.9e+02 Score=23.39 Aligned_cols=34 Identities=29% Similarity=0.276 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 359 LNNARETALSLQKEKENLEKTAAEQKQQLDNMET 392 (854)
Q Consensus 359 ~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~ 392 (854)
+++.+--+...+++...|+..+..++.+...+..
T Consensus 32 ~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~e 65 (77)
T 3mtu_E 32 LQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQ 65 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4455555666666666666666555555444433
No 18
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=21.66 E-value=3.8e+02 Score=22.86 Aligned_cols=26 Identities=12% Similarity=0.225 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 358 DLNNARETALSLQKEKENLEKTAAEQ 383 (854)
Q Consensus 358 ~~~~e~d~~~~L~~e~~~l~~~~~~e 383 (854)
++...+..+..|+.+..++...++..
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~~~q 54 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARMQQQ 54 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555544433
No 19
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=21.66 E-value=3.5e+02 Score=27.72 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcccHHHHHHHH
Q 041601 357 KDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVLGQIEKGHTLGTLTLVSLANYF 418 (854)
Q Consensus 357 ~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v~~~~~~~~~~~~tl~~~~~~f 418 (854)
+++...|++...|+.+...|......-..-.+++..+.-.+-.+. +++++...+
T Consensus 72 rQ~~~LR~r~~~Le~~L~~Li~~A~~Ne~l~~~~~~l~l~LL~a~--------sl~~l~~~L 125 (252)
T 3e98_A 72 RQVRLLRERNIEMRHRLSQLMDVARENDRLFDKTRRLVLDLLDAT--------SLEDVVSTV 125 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CHHHHHHHH
Confidence 445556666777776666666555444444444444433332222 567665555
No 20
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=20.70 E-value=1.1e+02 Score=27.20 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCcccHHHHHHHHHH
Q 041601 385 QQLDNMETIVNVLGQIEKGHTLGTLTLVSLANYFSD 420 (854)
Q Consensus 385 ~~i~~l~~~~~~v~~~~~~~~~~~~tl~~~~~~f~~ 420 (854)
+.+.+|+.|+..|+ ++.++|++....|++
T Consensus 34 eal~eLEeIV~~LE-------~gel~LEesl~lyee 62 (100)
T 1vp7_A 34 TALAELESLVSAME-------NGTLPLEQSLSAYRR 62 (100)
T ss_dssp HHHHHHHHHHHHHH-------TTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------cCCCCHHHHHHHHHH
Confidence 34455555555554 567777777766654
No 21
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=20.16 E-value=3.9e+02 Score=23.35 Aligned_cols=22 Identities=5% Similarity=0.164 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041601 365 TALSLQKEKENLEKTAAEQKQQ 386 (854)
Q Consensus 365 ~~~~L~~e~~~l~~~~~~e~~~ 386 (854)
....|+++.+.+...+...+.+
T Consensus 26 eL~~lEke~~~l~~el~~le~E 47 (96)
T 3q8t_A 26 ELEDVEKNRKVVAENLEKVQAE 47 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHH
Confidence 3334444444444444333333
Done!