Query 041601
Match_columns 854
No_of_seqs 297 out of 1056
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 14:59:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041601.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041601hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vp7a_ a.7.13.1 (A:) Exonucle 27.9 36 0.0026 26.3 4.8 29 385-420 10-38 (68)
2 d1wrua2 b.106.1.1 (A:3-176) Ba 26.7 19 0.0014 32.2 3.4 52 777-828 104-173 (174)
3 d1seta1 a.2.7.1 (A:1-110) Sery 26.4 78 0.0057 26.0 7.3 31 351-381 29-59 (110)
4 d2nn6c2 d.101.1.1 (C:188-276) 24.0 31 0.0023 27.5 3.9 36 812-848 32-67 (89)
5 d1zavu1 a.108.1.1 (U:1-30) Rib 18.4 62 0.0046 20.4 3.5 17 409-425 13-29 (30)
6 d1t1ha_ g.44.1.2 (A:) E3 ubiqu 18.2 24 0.0017 27.4 1.9 17 778-794 61-77 (78)
7 d1ux5a_ a.207.1.1 (A:) Bni1 {B 17.0 3.2E+02 0.023 27.2 11.4 34 340-373 281-314 (411)
8 d1x49a1 d.50.1.1 (A:8-92) dsRN 16.8 46 0.0034 26.3 3.4 39 780-821 8-48 (85)
9 d2i09a2 d.327.1.1 (A:108-226) 14.8 88 0.0064 26.6 4.8 66 782-850 10-83 (119)
10 d1fxkc_ a.2.5.1 (C:) Prefoldin 14.4 1.4E+02 0.011 24.9 6.5 42 353-401 4-45 (133)
No 1
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=27.86 E-value=36 Score=26.26 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCcccHHHHHHHHHH
Q 041601 385 QQLDNMETIVNVLGQIEKGHTLGTLTLVSLANYFSD 420 (854)
Q Consensus 385 ~~i~~l~~~~~~v~~~~~~~~~~~~tl~~~~~~f~~ 420 (854)
+.+.+|+.|+..++ ++.++|++....|++
T Consensus 10 e~l~~LE~IV~~LE-------~g~l~Leesl~~ye~ 38 (68)
T d1vp7a_ 10 TALAELESLVSAME-------NGTLPLEQSLSAYRR 38 (68)
T ss_dssp HHHHHHHHHHHHHH-------TTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-------CCCCCHHHHHHHHHH
Confidence 45667777777665 678899988888765
No 2
>d1wrua2 b.106.1.1 (A:3-176) Baseplate protein gpP {Bacteriophage mu [TaxId: 10677]}
Probab=26.71 E-value=19 Score=32.16 Aligned_cols=52 Identities=4% Similarity=0.165 Sum_probs=34.0
Q ss_pred ccccHHHHHHHHHHHcCCeeeeCCCCccCCcce--ee---------e-------ccEEEEEeCCCcEEEE
Q 041601 777 RQMTLKEVIEAYAQQHELLFKPKPGRMHNGQQI--YG---------F-------GNISIYVDSLNQMLYA 828 (854)
Q Consensus 777 ~~~sFKdvVE~~c~e~gllf~P~~gr~~~G~ql--Y~---------f-------G~v~iyId~~~~vv~~ 828 (854)
..+|..|||++.|.++||...........+.++ |. | -++.+|+|.++.+|+.
T Consensus 104 ~~~t~~~Iv~~i~~~~Gl~~~~~~~~~~~~~~~~~~~~q~~ESd~~fl~RLa~~~G~~~~~~~~G~Lv~~ 173 (174)
T d1wrua2 104 KNRTLEQIARDLCAPYGVTVRWELSDKESSAAFPGFTLDHSETVYEALVRASRARGVLMTSNAAGELVFS 173 (174)
T ss_dssp EEECHHHHHHHHHGGGTCCEEECCCCHHHHCCEEEEECCTTCBHHHHHHHHHHTTTCEEEECGGGCEEEE
T ss_pred cCCCHHHHHHHHHHHccCcceeeccccccCCCcceeeeecCCcHHHHHHHHHHHCCCEEEECCCcEEEEe
Confidence 468999999999999999876543322222222 22 2 3677899865556654
No 3
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=26.39 E-value=78 Score=25.99 Aligned_cols=31 Identities=13% Similarity=0.371 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 351 DIQKIDKDLNNARETALSLQKEKENLEKTAA 381 (854)
Q Consensus 351 di~~~~~~~~~e~d~~~~L~~e~~~l~~~~~ 381 (854)
.|..++.++|....+...|+.++..+.+++.
T Consensus 29 ~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~ 59 (110)
T d1seta1 29 ALLALDREVQELKKRLQEVQTERNQVAKRVP 59 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888887788888888877776663
No 4
>d2nn6c2 d.101.1.1 (C:188-276) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.98 E-value=31 Score=27.49 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=24.7
Q ss_pred eccEEEEEeCCCcEEEEecCCcccccCHHHHHHHhhh
Q 041601 812 FGNISIYVDSLNQMLYAQKPEGWTPVTLDTLLKMHHN 848 (854)
Q Consensus 812 fG~v~iyId~~~~vv~~~~~~~w~PisL~~Ll~~~~~ 848 (854)
-|.++|-++.++.++.++..|. .|++.++|.++.+.
T Consensus 32 ~~~lti~~~~~g~i~~l~k~G~-~~l~~~~l~~~~~~ 67 (89)
T d2nn6c2 32 TGTLTIVMDEEGKLCCLHKPGG-SGLTGAKLQDCMSR 67 (89)
T ss_dssp SEEEEEEECTTCCEEEEEESCC-SCCCHHHHHHHHHH
T ss_pred CceEEEEEcCCCCEEEEEecCC-cccCHHHHHHHHHH
Confidence 4689999999889999887554 34555555444443
No 5
>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=18.43 E-value=62 Score=20.37 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=11.0
Q ss_pred ccHHHHHHHHHHHHHhh
Q 041601 409 LTLVSLANYFSDLHKRF 425 (854)
Q Consensus 409 ~tl~~~~~~f~~L~~~~ 425 (854)
+|..++++....|..+|
T Consensus 13 ltvaelaelvk~ledkf 29 (30)
T d1zavu1 13 LTVSELAELVKKLEDKF 29 (30)
T ss_dssp SBHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHhhc
Confidence 45677777776666554
No 6
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=18.21 E-value=24 Score=27.43 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=15.5
Q ss_pred cccHHHHHHHHHHHcCC
Q 041601 778 QMTLKEVIEAYAQQHEL 794 (854)
Q Consensus 778 ~~sFKdvVE~~c~e~gl 794 (854)
..++|++|++|+++||+
T Consensus 61 N~~L~~~I~~~~~~~~~ 77 (78)
T d1t1ha_ 61 NYVLKSLIALWCESNGI 77 (78)
T ss_dssp CTTTHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHHHHHhCc
Confidence 46899999999999997
No 7
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=16.95 E-value=3.2e+02 Score=27.17 Aligned_cols=34 Identities=12% Similarity=0.382 Sum_probs=17.3
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041601 340 NVRLIVDLAEVDIQKIDKDLNNARETALSLQKEK 373 (854)
Q Consensus 340 Nl~llv~~~e~di~~~~~~~~~e~d~~~~L~~e~ 373 (854)
.|..+.+.+.-++..+...++..+.....++++.
T Consensus 281 el~~v~~a~~~~~~~l~~~~~~L~~~l~~i~~~~ 314 (411)
T d1ux5a_ 281 ELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSV 314 (411)
T ss_dssp HTHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555554443
No 8
>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.75 E-value=46 Score=26.32 Aligned_cols=39 Identities=10% Similarity=0.193 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHHcCCeee--eCCCCccCCcceeeeccEEEEEeC
Q 041601 780 TLKEVIEAYAQQHELLFK--PKPGRMHNGQQIYGFGNISIYVDS 821 (854)
Q Consensus 780 sFKdvVE~~c~e~gllf~--P~~gr~~~G~qlY~fG~v~iyId~ 821 (854)
.||+.|.+||+.+++... -....-.+..|.|. +.|+|+.
T Consensus 8 ~yk~~L~E~~Qk~~~~~~y~~~~~~Gp~h~~~F~---~~v~v~g 48 (85)
T d1x49a1 8 FYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFT---FQVLIDE 48 (85)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEEEEESCSSSCEEE---EEEEESS
T ss_pred hHHHHHHHHHHhcCCCCeEEEEEecCCCCCceEE---EEEecCc
Confidence 599999999999998521 11000112357887 6788875
No 9
>d2i09a2 d.327.1.1 (A:108-226) Phosphopentomutase DeoB {Streptococcus mutans [TaxId: 1309]}
Probab=14.78 E-value=88 Score=26.56 Aligned_cols=66 Identities=18% Similarity=0.289 Sum_probs=43.3
Q ss_pred HHHHHHHHHHcCCeeeeCCCCccCCcceee-e-------ccEEEEEeCCCcEEEEecCCcccccCHHHHHHHhhhcc
Q 041601 782 KEVIEAYAQQHELLFKPKPGRMHNGQQIYG-F-------GNISIYVDSLNQMLYAQKPEGWTPVTLDTLLKMHHNSL 850 (854)
Q Consensus 782 KdvVE~~c~e~gllf~P~~gr~~~G~qlY~-f-------G~v~iyId~~~~vv~~~~~~~w~PisL~~Ll~~~~~~~ 850 (854)
.++|+++|..-|+-++=.-|+..+|-+|-. + |...||=-.+ .|+.+---. .-++|++|.+.|+.+|
T Consensus 10 ~eli~~~~~~~g~~~il~gN~~aSGT~II~~~Geeh~~TG~pIvYTSaD-SVfQIAaHE--~~~~le~Ly~~C~~aR 83 (119)
T d2i09a2 10 EEIISKIEKFSGRKVIREANKPYSGTAVIDDFGPRQMETGELIIYTSAD-PVLQIAAHE--DVIPLDELYRICEYAR 83 (119)
T ss_dssp HHHHHHHHHHHSCCBCGGGCSBCCCC-------------CCBEEEECSS-SEEEEECCT--TTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeeccCCccCcHHHHHHHHHHHHHHhCCeEEEecCC-ceeeeeecc--cccCHHHHHHHHHHHH
Confidence 689999999999887742366667766653 3 5777887653 565544322 3468999999998754
No 10
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=14.37 E-value=1.4e+02 Score=24.87 Aligned_cols=42 Identities=19% Similarity=0.300 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 041601 353 QKIDKDLNNARETALSLQKEKENLEKTAAEQKQQLDNMETIVNVLGQIE 401 (854)
Q Consensus 353 ~~~~~~~~~e~d~~~~L~~e~~~l~~~~~~e~~~i~~l~~~~~~v~~~~ 401 (854)
..+..+++..++.+..|..+.+.++ ..+..++...+.|+.+.
T Consensus 4 ~eL~~~~~~l~~~l~~l~~~i~~l~-------~~~~e~~~~~~~L~~l~ 45 (133)
T d1fxkc_ 4 AEIVAQLNIYQSQVELIQQQMEAVR-------ATISELEILEKTLSDIQ 45 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhh
Confidence 3444555554445445544444444 44444555555555444
Done!