BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041602
(223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I38|A Chain A, Solution Structure Of The Rrm Of Srp20
Length = 150
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFXXXXXXXXXXXXXXGKN 62
+VYVGNL ++ +LE F +G LRSVWVAR PPG+AFVEF G+
Sbjct: 75 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRDLDGRT 134
Query: 63 ----GWRVELSHNSK 73
RVELS+ K
Sbjct: 135 LCGCRVRVELSNGEK 149
>pdb|2I2Y|A Chain A, Solution Structure Of The Rrm Of Srp20 Bound To The Rna
Cauc
Length = 150
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFXXXXXXXXXXXXXXGKN 62
+VYVGNL ++ +LE F +G LRSVWVAR PPG+AFVEF G+
Sbjct: 75 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 134
Query: 63 ----GWRVELSHNSK 73
RVELS+ K
Sbjct: 135 LCGCRVRVELSNGEK 149
>pdb|2HVZ|A Chain A, Solution Structure Of The Rrm Domain Of Sr Rich Factor
9g8
Length = 101
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 31/43 (72%)
Query: 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEF 45
+VYVGNL + +LE F +G LR+VW+AR PPG+AFVEF
Sbjct: 2 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEF 44
>pdb|1X5T|A Chain A, Solution Structure Of The Second Rrm Domain In Splicing
Factor 3b
Length = 96
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRMFGV-LRSVWVARRP-----PGYAFVEF 45
S +++GNLDP + E+ L D F FGV L++ + R P GYAF+ F
Sbjct: 6 SGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 55
>pdb|1X4A|A Chain A, Solution Structure Of Rrm Domain In Splicing Factor Sf2
Length = 109
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
Query: 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR---PPGYAFVEF 45
R+YVGNL P + +D+ED F +G +R + + R PP +AFVEF
Sbjct: 24 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPP-FAFVEF 68
>pdb|2QFJ|A Chain A, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
pdb|2QFJ|B Chain B, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
Length = 216
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRP-----PGYAFVEF 45
+R+YV ++ +S+ D++ F FG ++S +AR P GY F+E+
Sbjct: 126 NRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEY 174
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 1 MSRVYVGNLDPRVSERDLEDEFRMFGVLRSV---W--VARRPPGYAFVEF 45
MSRVYVG++ + E + F FG ++S+ W V + G+AFVE+
Sbjct: 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEY 77
>pdb|2YTC|A Chain A, Solution Structure Of Rna Binding Domain In Pre-Mrna-
Splicing Factor Rbm22
Length = 85
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 1 MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEF 45
++ +YVG L ++E DL + F FG +R++ V +R AF++F
Sbjct: 12 ITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQ-CAFIQF 55
>pdb|2KXF|A Chain A, Solution Structure Of The First Two Rrm Domains Of
Fbp-Interacting Repressor (Fir)
pdb|2KXH|A Chain A, Solution Structure Of The First Two Rrm Domains Of Fir In
The Complex With Fbp Nbox Peptide
Length = 199
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRP-----PGYAFVEF 45
+R+YV ++ +S+ D++ F FG ++S +AR P GY F+E+
Sbjct: 111 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 159
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 1 MSRVYVGNLDPRVSERDLEDEFRMFGVLRSV---W--VARRPPGYAFVEF 45
M RVYVG++ + E + F FG ++S+ W V + G+AFVE+
Sbjct: 13 MCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEY 62
>pdb|3UWT|A Chain A, Crystal Structure Of A Rna Binding Domain Of Poly-U
Binding Splicing Factor 60kda (Puf60) From Homo Sapiens
At 2.50 A Resolution
Length = 200
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRP-----PGYAFVEF 45
+R+YV ++ +S+ D++ F FG ++S +AR P GY F+E+
Sbjct: 110 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 158
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSV---W--VARRPPGYAFVEF 45
RVYVG++ + E + F FG ++S+ W V + G+AFVE+
Sbjct: 14 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDXSWDSVTXKHKGFAFVEY 61
>pdb|2JWN|A Chain A, Solution Nmr Structure Of The Protease-Resistent Domain
Of Xenopus Laevis Epabp2
pdb|2JWN|B Chain B, Solution Nmr Structure Of The Protease-Resistent Domain
Of Xenopus Laevis Epabp2
Length = 124
Score = 33.5 bits (75), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 4 VYVGNLDPRVSERDLEDEFRMFGVLRSVWV-----ARRPPGYAFVEF 45
VYVGN+D + +DLE F G + + + + P GYA++EF
Sbjct: 39 VYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEF 85
>pdb|2DNL|A Chain A, Solution Structure Of Rna Binding Domain In Cytoplasmic
Polyadenylation Element Binding Protein 3
Length = 114
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR-------PPGYAFVEF 45
+V+VG L P + E ++ FR FG L W + P GYAF+ F
Sbjct: 10 KVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLF 59
>pdb|1CVJ|A Chain A, X-Ray Crystal Structure Of The Poly(A)-Binding Protein
In Complex With Polyadenylate Rna
pdb|1CVJ|B Chain B, X-Ray Crystal Structure Of The Poly(A)-Binding Protein
In Complex With Polyadenylate Rna
pdb|1CVJ|C Chain C, X-Ray Crystal Structure Of The Poly(A)-Binding Protein
In Complex With Polyadenylate Rna
pdb|1CVJ|D Chain D, X-Ray Crystal Structure Of The Poly(A)-Binding Protein
In Complex With Polyadenylate Rna
pdb|1CVJ|E Chain E, X-Ray Crystal Structure Of The Poly(A)-Binding Protein
In Complex With Polyadenylate Rna
pdb|1CVJ|F Chain F, X-Ray Crystal Structure Of The Poly(A)-Binding Protein
In Complex With Polyadenylate Rna
pdb|1CVJ|G Chain G, X-Ray Crystal Structure Of The Poly(A)-Binding Protein
In Complex With Polyadenylate Rna
pdb|1CVJ|H Chain H, X-Ray Crystal Structure Of The Poly(A)-Binding Protein
In Complex With Polyadenylate Rna
Length = 190
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 1 MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWV-----ARRPPGYAFVEF 45
M+ +YVG+L P V+E L ++F G + S+ V RR GYA+V F
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNF 59
>pdb|4F02|A Chain A, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
pdb|4F02|D Chain D, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
Length = 213
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 1 MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWV-----ARRPPGYAFVEF 45
M+ +YVG+L P V+E L ++F G + S+ V RR GYA+V F
Sbjct: 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNF 64
>pdb|2DH7|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Nucleolysin Tiar
Length = 105
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEF 45
V+VG+L P ++ D++ F FG + V + + GY FV F
Sbjct: 17 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 64
>pdb|2DGO|A Chain A, Solution Structure Of The Rna Binding Domain In
Cytotoxic Granule-Associated Rna Binding Protein 1
pdb|2RNE|A Chain A, Solution Structure Of The Second Rna Recognition Motif
(Rrm) Of Tia-1
Length = 115
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 4 VYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEF 45
V+VG+L P ++ D++ F FG + V + + GY FV F
Sbjct: 18 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 64
>pdb|2DNH|A Chain A, Solution Structure Of Rna Binding Domain In Bruno-Like 5
Rna Binding Protein
Length = 105
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGY----AFVEF 45
+++VG L+ + SE D+ F+ FGV+ V R P G AFV+F
Sbjct: 17 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKF 63
>pdb|2CQH|A Chain A, Solution Structure Of The Rna Binding Domain Of Igf-Ii
Mrna- Binding Protein 2
Length = 93
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 7/48 (14%)
Query: 1 MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR---PPGYAFVEF 45
M+++Y+GNL P V+ DL ++FG R + +A + GYAFV++
Sbjct: 8 MNKLYIGNLSPAVTADDLR---QLFGD-RKLPLAGQVLLKSGYAFVDY 51
>pdb|3UCG|A Chain A, Crystal Structure Of A Rna Binding Domain Of
Hypothetical Polyadenylate-Binding Protein (Pabpn1)
From Homo Sapiens At 1.95 A Resolution
Length = 89
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 4 VYVGNLDPRVSERDLEDEFRMFGVLRSVWV-----ARRPPGYAFVEF 45
+YVGN+D + +LE F G + V + + P G+A++EF
Sbjct: 9 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEF 55
>pdb|3B4D|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|B Chain B, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|C Chain C, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|D Chain D, Crystal Structure Of Human Pabpn1 Rrm
Length = 96
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 4 VYVGNLDPRVSERDLEDEFRMFGVLRSVWV-----ARRPPGYAFVEF 45
+YVGN+D + +LE F G + V + + P G+A++EF
Sbjct: 8 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEF 54
>pdb|2DGS|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Daz- Associated Protein 1
Length = 99
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWV-----ARRPPGYAFVEF 45
++++VG + E +L + F+ FGV+ V + +RP G+ F+ F
Sbjct: 11 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITF 59
>pdb|3MD3|A Chain A, Crystal Structure Of The First Two Rrm Domains Of Yeast
Poly Binding Protein (Pub1)
Length = 166
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 4 VYVGNLDPRVSERDLEDEFRMFGVLRSVWV----ARRPPGYAFVEF 45
+YVGNLD ++E L+ F++ G + ++ + + YAFVE+
Sbjct: 3 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEY 48
>pdb|2KI2|A Chain A, Solution Structure Of Ss-Dna Binding Protein 12rnp2
Precursor, Hp0827(O25501_helpy) Form Helicobacter
Pylori
Length = 90
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 1 MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWV-----ARRPPGYAFVE 44
M +YVGNL + +++ F FG + +V + ++P G+ FVE
Sbjct: 1 MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVE 49
>pdb|4F25|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human
Pabpc1 At Ph 6.0
pdb|4F26|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human
Pabpc1 A Ph 9.0
Length = 115
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 4 VYVGNLDPRVSERDLEDEFRMFGVLRSVWVA---RRPPGYAFVEF 45
+++ NLD + + L D F FG + S V GY FV F
Sbjct: 8 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHF 52
>pdb|2K8G|A Chain A, Solution Structure Of Rrm2 Domain Of Pabp1
Length = 95
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 1 MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVA---RRPPGYAFVEF 45
+ +++ NLD + + L D F FG + S V GY FV F
Sbjct: 11 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHF 58
>pdb|2A51|A Chain A, Structure Of The (13-51) Domain Of The Nucleocapsid
Protein Ncp8 From Sivlhoest
Length = 39
Score = 27.7 bits (60), Expect = 4.8, Method: Composition-based stats.
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 89 LKCYECGEPGHFAR 102
L C+ CG+PGH AR
Sbjct: 1 LTCFNCGKPGHTAR 14
>pdb|2CPX|A Chain A, Solution Structure Of Rna Binding Domain In Hypothetical
Protein Flj11016
Length = 115
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 4 VYVGNLDPRVSERDLEDEFRMF 25
+Y+ NL PRV+ERDL F F
Sbjct: 28 LYLKNLSPRVTERDLVSLFARF 49
>pdb|2YWK|A Chain A, Crystal Structure Of Rrm-Domain Derived From Human
Putative Rna-Binding Protein 11
Length = 95
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 4 VYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR----RPPGYAFVEF 45
V+VGNL+ RV E L + F G L V + + +P + FV F
Sbjct: 19 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCF 64
>pdb|2JRS|A Chain A, Solution Nmr Structure Of Caper Rrm2 Domain. Northeast
Structural Genomics Target Hr4730a
Length = 108
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSVWV-----ARRPPGYAFVEF 45
R+YVG+L ++E L F FG + S+ + R GY F+ F
Sbjct: 28 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITF 75
>pdb|1X5U|A Chain A, Solution Structure Of Rrm Domain In Splicing Factor 3b
Length = 105
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEF 45
+ VYVG LD +VSE L + F G + + + + + GY FVEF
Sbjct: 16 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,613,812
Number of Sequences: 62578
Number of extensions: 125858
Number of successful extensions: 297
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 275
Number of HSP's gapped (non-prelim): 40
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)