BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041602
(223 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6K4N0|RSZ21_ORYSJ Serine/arginine-rich splicing factor RSZ21 OS=Oryza sativa subsp.
japonica GN=RSZP21 PE=2 SV=1
Length = 185
Score = 183 bits (464), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/138 (69%), Positives = 113/138 (81%), Gaps = 9/138 (6%)
Query: 1 MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDG 60
M+R+YVGNLDPRV+ +LEDEFR+FGVLRSVWVAR+PPG+AF++FDD+RDA DA+R LDG
Sbjct: 1 MARLYVGNLDPRVTSGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDG 60
Query: 61 KNGWRVELSHNSKGGGGRGGRGRGGGEDLKCYECGEPGHFARECRLRIGSRGLGSGR--- 117
KNGWRVELS NS RGGR R GG ++KCYECGE GHFARECRLRIG GLGSG+
Sbjct: 61 KNGWRVELSRNSS---SRGGRDRHGGSEMKCYECGETGHFARECRLRIGPGGLGSGKRRS 117
Query: 118 ---RRSPSPRRRRSPSYG 132
RS SP+ R+SP+YG
Sbjct: 118 RSRSRSRSPQYRKSPTYG 135
>sp|Q6K9C3|RZP23_ORYSJ Serine/arginine-rich splicing factor RSZ23 OS=Oryza sativa subsp.
japonica GN=RSZ23 PE=2 SV=1
Length = 200
Score = 181 bits (458), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/108 (79%), Positives = 97/108 (89%), Gaps = 3/108 (2%)
Query: 1 MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDG 60
M+RVYVGNLDPRV+ R++EDEFR+FGVLRSVWVAR+PPG+AF++FDDRRDA DAIR LDG
Sbjct: 1 MARVYVGNLDPRVTAREIEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAEDAIRDLDG 60
Query: 61 KNGWRVELSHNSKGGGGRGGRGRGGGEDLKCYECGEPGHFARECRLRI 108
KNGWRVELS +K G GR GR R GG D+KCYECGEPGHFARECRLRI
Sbjct: 61 KNGWRVELS--TKAGSGR-GRDRSGGSDMKCYECGEPGHFARECRLRI 105
>sp|Q69KL9|RZ21A_ORYSJ Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa subsp.
japonica GN=RSZ21A PE=2 SV=1
Length = 185
Score = 174 bits (440), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 83/108 (76%), Positives = 94/108 (87%), Gaps = 2/108 (1%)
Query: 1 MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDG 60
M+RVYVGNLDPRV+ R+LEDEFR+FGVLRSVWVAR+PPG+AF++FDDRRDA DAIR +DG
Sbjct: 1 MARVYVGNLDPRVTARELEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAQDAIRDIDG 60
Query: 61 KNGWRVELSHNSKGGGGRGGRGRGGGEDLKCYECGEPGHFARECRLRI 108
KNGWRVELS N+ GRGGR R G + KCYECGE GHFARECRLRI
Sbjct: 61 KNGWRVELSRNA--SSGRGGRDRYGSSESKCYECGETGHFARECRLRI 106
>sp|O81126|RZP22_ARATH Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis thaliana
GN=RSZ22 PE=1 SV=1
Length = 200
Score = 160 bits (406), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 100/142 (70%), Positives = 107/142 (75%), Gaps = 10/142 (7%)
Query: 1 MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDG 60
MSRVYVGNLDPRV+ER+LEDEFR FGV+RSVWVARRPPGYAF++F+D RDA DAIRALDG
Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60
Query: 61 KNGWRVELSHN----------SKGGGGRGGRGRGGGEDLKCYECGEPGHFARECRLRIGS 110
KNGWRVE SHN GGG GGRG GG DLKCYECGE GHFARECR R G+
Sbjct: 61 KNGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFARECRNRGGT 120
Query: 111 RGLGSGRRRSPSPRRRRSPSYG 132
S R PR RRSPSYG
Sbjct: 121 GRRRSKSRSRTPPRYRRSPSYG 142
>sp|O81127|RZP21_ARATH Serine/arginine-rich splicing factor RSZ21 OS=Arabidopsis thaliana
GN=RSZ21 PE=1 SV=1
Length = 187
Score = 158 bits (400), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 84/104 (80%), Positives = 91/104 (87%)
Query: 1 MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDG 60
M+RVYVGNLDPRV+ER+LEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDA+DAI ALD
Sbjct: 1 MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60
Query: 61 KNGWRVELSHNSKGGGGRGGRGRGGGEDLKCYECGEPGHFAREC 104
KNGWRVELSH KGG G GG RGG ED KCYECGE GHFAREC
Sbjct: 61 KNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
>sp|Q9SJA6|RZ22A_ARATH Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis thaliana
GN=RSZ22A PE=1 SV=1
Length = 196
Score = 150 bits (380), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 88/111 (79%), Gaps = 7/111 (6%)
Query: 1 MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDG 60
MSRVYVGNLDPRV+ER+LEDEFR FGV+RSVWVARRPPGYAF++F+D RDA DAIR +DG
Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60
Query: 61 KNGWRVELSHN-------SKGGGGRGGRGRGGGEDLKCYECGEPGHFAREC 104
KNGWRVE SHN G GG G GG DLKCYECGE GHFAREC
Sbjct: 61 KNGWRVEQSHNRGGGGGRGGGRGGGDGGRGRGGSDLKCYECGESGHFAREC 111
>sp|Q16629|SRSF7_HUMAN Serine/arginine-rich splicing factor 7 OS=Homo sapiens GN=SRSF7
PE=1 SV=1
Length = 238
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 68/109 (62%), Gaps = 6/109 (5%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGK 61
++VYVGNL + +LE F +G LR+VW+AR PPG+AFVEF+D RDA DA+R LDGK
Sbjct: 11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 62 ----NGWRVELSHN--SKGGGGRGGRGRGGGEDLKCYECGEPGHFAREC 104
+ RVELS + R R + +CYECGE GH+A +C
Sbjct: 71 VICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>sp|Q8BL97|SRSF7_MOUSE Serine/arginine-rich splicing factor 7 OS=Mus musculus GN=Srsf7
PE=1 SV=1
Length = 267
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 68/109 (62%), Gaps = 6/109 (5%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGK 61
++VYVGNL + +LE F +G LR+VW+AR PPG+AFVEF+D RDA DA+R LDGK
Sbjct: 40 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK 99
Query: 62 ----NGWRVELSHN--SKGGGGRGGRGRGGGEDLKCYECGEPGHFAREC 104
+ RVELS + R R + +CYECGE GH+A +C
Sbjct: 100 VICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 148
>sp|Q3T106|SRSF7_BOVIN Serine/arginine-rich splicing factor 7 OS=Bos taurus GN=SRSF7 PE=2
SV=1
Length = 235
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 68/109 (62%), Gaps = 6/109 (5%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGK 61
++VYVGNL + +LE F +G LR+VW+AR PPG+AFVEF+D RDA DA+R LDGK
Sbjct: 11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 62 ----NGWRVELSHN--SKGGGGRGGRGRGGGEDLKCYECGEPGHFAREC 104
+ RVELS + R R + +CYECGE GH+A +C
Sbjct: 71 VICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>sp|Q02427|RBP1_DROME RNA-binding protein 1 OS=Drosophila melanogaster GN=Rbp1 PE=2
SV=3
Length = 144
Score = 80.9 bits (198), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 45/58 (77%)
Query: 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDG 60
+VYVGNL S+ ++E F +G LR+VWVAR PPG+AFVEF+DRRDA DA RALDG
Sbjct: 12 KVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRALDG 69
>sp|P84104|SRSF3_MOUSE Serine/arginine-rich splicing factor 3 OS=Mus musculus GN=Srsf3
PE=1 SV=1
Length = 164
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 54/81 (66%), Gaps = 4/81 (4%)
Query: 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN 62
+VYVGNL ++ +LE F +G LRSVWVAR PPG+AFVEF+D RDA DA+R LDG+
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70
Query: 63 ----GWRVELSHNSKGGGGRG 79
RVELS+ K RG
Sbjct: 71 LCGCRVRVELSNGEKRSRNRG 91
>sp|P84103|SRSF3_HUMAN Serine/arginine-rich splicing factor 3 OS=Homo sapiens GN=SRSF3
PE=1 SV=1
Length = 164
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 54/81 (66%), Gaps = 4/81 (4%)
Query: 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN 62
+VYVGNL ++ +LE F +G LRSVWVAR PPG+AFVEF+D RDA DA+R LDG+
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70
Query: 63 ----GWRVELSHNSKGGGGRG 79
RVELS+ K RG
Sbjct: 71 LCGCRVRVELSNGEKRSRNRG 91
>sp|Q3SZR8|SRSF3_BOVIN Serine/arginine-rich splicing factor 3 OS=Bos taurus GN=SRSF3
PE=2 SV=1
Length = 164
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 54/81 (66%), Gaps = 4/81 (4%)
Query: 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN 62
+VYVGNL ++ +LE F +G LRSVWVAR PPG+AFVEF+D RDA DA+R LDG+
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70
Query: 63 ----GWRVELSHNSKGGGGRG 79
RVELS+ K RG
Sbjct: 71 LCGCRVRVELSNGEKRSRNRG 91
>sp|Q18409|RSP6_CAEEL Probable splicing factor, arginine/serine-rich 6
OS=Caenorhabditis elegans GN=rsp-6 PE=3 SV=1
Length = 179
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 51/72 (70%), Gaps = 4/72 (5%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGK 61
++VYVG L + ++LE+ F FG +R VWVARRPPG+AFVE+DD RDA DA+RALDG
Sbjct: 3 AKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGS 62
Query: 62 N----GWRVELS 69
RVELS
Sbjct: 63 RICGVRARVELS 74
>sp|Q24491|RX21_DROME RNA-binding protein Rsf1 OS=Drosophila melanogaster GN=Rsf1 PE=1
SV=1
Length = 197
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGK 61
+RVYVGNL +V + DLE EF +G L SVW+A PPG+AFVEF+ R DA A L+G
Sbjct: 7 TRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDILNGS 66
Query: 62 ----NGWRVELS 69
+ RVE+S
Sbjct: 67 ELLGSQLRVEIS 78
>sp|O22315|SRSF1_ARATH Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1
SV=1
Length = 303
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 46/73 (63%), Gaps = 6/73 (8%)
Query: 4 VYVGNLDPRVSERDLEDEFRMFG--VLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGK 61
VYVGNL + ER++ED F +G V + V RPPGYAFVEFDD RDA DAI DG
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 62 N----GWRVELSH 70
+ RVEL+H
Sbjct: 69 DFDGHRLRVELAH 81
>sp|Q23121|RSP1_CAEEL Probable splicing factor, arginine/serine-rich 1
OS=Caenorhabditis elegans GN=rsp-1 PE=3 SV=1
Length = 312
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 48/72 (66%), Gaps = 5/72 (6%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGK 61
+R+Y+G L RVSE+D+E FR +G +R V + G+ FVEFDD+RDA DA+ L+GK
Sbjct: 3 ARIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKN---GFGFVEFDDKRDAEDAVHDLNGK 59
Query: 62 N--GWRVELSHN 71
G RV L ++
Sbjct: 60 ELGGERVILDYS 71
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGK- 61
RV V NL R+S +DL+D+ R GV + A + P A + F D I DG
Sbjct: 130 RVVVENLSSRISWQDLKDQVRRQGVEPTYAEAHKRPNEALLCFATPSDLKRCIEKCDGMD 189
Query: 62 -NGWRVELSHNSKGG 75
NG ++++ +S+ G
Sbjct: 190 LNGRKIKMIDDSQAG 204
>sp|Q9FYB7|RSZ32_ARATH Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis thaliana
GN=RS2Z32 PE=1 SV=1
Length = 284
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 69/152 (45%), Gaps = 42/152 (27%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGK 61
+R+YVG L R RDLE F +G +R V + R YAFVEF D RDA DA LDG+
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKR---DYAFVEFSDPRDADDARYYLDGR 67
Query: 62 N--GWRVELSHN------SKGGGGRG---GRGR---------------GGGEDLKCYECG 95
+ G R+ + + S+ G RG G GR G KCY CG
Sbjct: 68 DFDGSRITVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCG 127
Query: 96 EPGHFARECRLRIGSRGLGSGRRRSPSPRRRR 127
E GH R C + SPSP++ R
Sbjct: 128 ERGHIERNC-------------KNSPSPKKAR 146
>sp|Q8VYA5|RSZ33_ARATH Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis thaliana
GN=RS2Z33 PE=1 SV=1
Length = 290
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 60/112 (53%), Gaps = 17/112 (15%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGK 61
+R+YVG L R RDLE F +G +R V + R YAFVEF D RDA DA LDG+
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKR---DYAFVEFGDPRDADDARHYLDGR 67
Query: 62 --NGWRVELSHNSKGGGGRGGRG-------RGGGEDLKCYECGEPGHFAREC 104
+G R+ + + G RG R G G +C+ CG GH+AR+C
Sbjct: 68 DFDGSRITVEFSR--GAPRGSRDFDSRGPPPGAG---RCFNCGVDGHWARDC 114
>sp|Q7SXP4|SRS1A_DANRE Serine/arginine-rich splicing factor 1A OS=Danio rerio GN=srsf1a
PE=2 SV=2
Length = 257
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRP--PGYAFVEFDDRRDAVDAIRALDG 60
R+YVGNL P + +D+ED F +G +R + + R P +AFVEF+D RDA DA+ A DG
Sbjct: 16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDG 75
Query: 61 --KNGWRVELS 69
+G+R+ +
Sbjct: 76 YDYDGYRLRVE 86
>sp|Q4R979|RBM4_MACFA RNA-binding protein 4 OS=Macaca fascicularis GN=RBM4 PE=2 SV=1
Length = 364
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 9/105 (8%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGK 61
++++VGN+ P + ++L +F +G + + + YAFV + DAV+AIR LD
Sbjct: 78 TKLHVGNISPTCTNKELRAKFEEYGPVIECDIVK---DYAFVHMERAEDAVEAIRGLDNT 134
Query: 62 --NGWRVELSHNSKGGGGRGGRGRGGGEDLKCYECGEPGHFAREC 104
G R+ + ++ R G G+ CY CG+ GH+++EC
Sbjct: 135 EFQGKRMHVQLST----SRLRTAPGMGDQSGCYRCGKEGHWSKEC 175
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 1 MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRAL 58
M ++++GNL +E+++ F +G + + + Y FV +D+ A DAIR L
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIK---NYGFVHIEDKTAAEDAIRNL 55
>sp|Q9BWF3|RBM4_HUMAN RNA-binding protein 4 OS=Homo sapiens GN=RBM4 PE=1 SV=1
Length = 364
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 9/105 (8%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGK 61
++++VGN+ P + ++L +F +G + + + YAFV + DAV+AIR LD
Sbjct: 78 TKLHVGNISPTCTNKELRAKFEEYGPVIECDIVK---DYAFVHMERAEDAVEAIRGLDNT 134
Query: 62 --NGWRVELSHNSKGGGGRGGRGRGGGEDLKCYECGEPGHFAREC 104
G R+ + ++ R G G+ CY CG+ GH+++EC
Sbjct: 135 EFQGKRMHVQLST----SRLRTAPGMGDQSGCYRCGKEGHWSKEC 175
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 1 MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRAL 58
M ++++GNL +E+++ F +G + + + Y FV +D+ A DAIR L
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIK---NYGFVHIEDKTAAEDAIRNL 55
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3
OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2
Length = 258
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-RPPGYAFVEFDDRRDAVDAIRALDG 60
+VYVGNL V E+++ED F +G ++ V + R P +AFVEF+D RDA DA+RA DG
Sbjct: 9 QKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDG 68
>sp|Q3MHX3|RBM4_BOVIN RNA-binding protein 4 OS=Bos taurus GN=RBM4 PE=2 SV=1
Length = 362
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 9/105 (8%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGK 61
++++VGN+ P + ++L +F +G + + + YAFV + DAV+AIR LD
Sbjct: 78 TKLHVGNISPTCTNKELRAKFEEYGPVIECDIVK---DYAFVHMERAEDAVEAIRGLDNT 134
Query: 62 --NGWRVELSHNSKGGGGRGGRGRGGGEDLKCYECGEPGHFAREC 104
G R+ + ++ R G G+ CY CG+ GH+++EC
Sbjct: 135 EFQGKRMHVQLST----SRLRTAPGMGDQSGCYRCGKEGHWSKEC 175
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 1 MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRAL 58
M ++++GNL +E+++ F +G + + + Y FV +D+ A DAIR L
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIK---NYGFVHIEDKTAAEDAIRNL 55
>sp|Q8C7Q4|RBM4_MOUSE RNA-binding protein 4 OS=Mus musculus GN=Rbm4 PE=1 SV=1
Length = 361
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 9/105 (8%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGK 61
++++VGN+ P + ++L +F +G + + + YAFV + DAV+AIR LD
Sbjct: 78 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK---DYAFVHMERAEDAVEAIRGLDNT 134
Query: 62 --NGWRVELSHNSKGGGGRGGRGRGGGEDLKCYECGEPGHFAREC 104
G R+ + ++ R G G+ CY CG+ GH+++EC
Sbjct: 135 EFQGKRMHVQLST----SRLRTAPGMGDQSGCYRCGKEGHWSKEC 175
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 1 MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRAL 58
M ++++GNL +E+++ F +G + + + Y FV +D+ A DAIR L
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIK---NYGFVHIEDKTAAEDAIRNL 55
>sp|Q5ZML3|SRSF1_CHICK Serine/arginine-rich splicing factor 1 OS=Gallus gallus GN=SRSF1
PE=1 SV=3
Length = 257
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRP--PGYAFVEFDDRRDAVDAIRALDG 60
R+YVGNL P + +D+ED F +G +R + + R P +AFVEF+D RDA DA+ DG
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 61 --KNGWRVELS 69
+G+R+ +
Sbjct: 77 YDYDGYRLRVE 87
>sp|Q9BQ04|RBM4B_HUMAN RNA-binding protein 4B OS=Homo sapiens GN=RBM4B PE=1 SV=1
Length = 359
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 9/105 (8%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGK 61
++++VGN+ P + ++L +F +G + + + YAFV + DAV+AIR LD
Sbjct: 78 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK---DYAFVHMERAEDAVEAIRGLDNT 134
Query: 62 --NGWRVELSHNSKGGGGRGGRGRGGGEDLKCYECGEPGHFAREC 104
G R+ + ++ R G G+ CY CG+ GH+++EC
Sbjct: 135 EFQGKRMHVQLST----SRLRTAPGMGDQSGCYRCGKEGHWSKEC 175
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 1 MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRAL 58
M ++++GNL +E+++ F +G + + + Y FV +D+ A DAIR L
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIK---NYGFVHIEDKTAAEDAIRNL 55
>sp|Q6DII2|SRSF1_XENTR Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis
GN=srsf1 PE=2 SV=1
Length = 267
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR--PPGYAFVEFDDRRDAVDAIRALDG 60
R+YVGNL P + +D+ED F +G +R + + R P +AFVEF+D RDA DA+ DG
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 61 --KNGWRVELS 69
+G+R+ +
Sbjct: 77 YDYDGYRLRVE 87
>sp|Q06AT9|RBM4B_PIG RNA-binding protein 4B OS=Sus scrofa GN=RBM4B PE=2 SV=1
Length = 359
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 9/105 (8%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGK 61
++++VGN+ P + ++L +F +G + + + YAFV + DAV+AIR LD
Sbjct: 78 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK---DYAFVHMERAEDAVEAIRGLDNT 134
Query: 62 --NGWRVELSHNSKGGGGRGGRGRGGGEDLKCYECGEPGHFAREC 104
G R+ + ++ R G G+ CY CG+ GH+++EC
Sbjct: 135 EFQGKRMHVQLST----SRLRTAPGMGDQSGCYRCGKEGHWSKEC 175
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 1 MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRAL 58
M ++++GNL +E+++ F +G + + + Y FV +D+ A DAIR L
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIK---NYGFVHIEDKTAAEDAIRNL 55
>sp|Q9BDY9|RBM4_RABIT RNA-binding protein 4 OS=Oryctolagus cuniculus GN=RBM4 PE=2 SV=1
Length = 359
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 9/105 (8%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGK 61
++++VGN+ P + ++L +F +G + + + YAFV + DAV+AIR LD
Sbjct: 78 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK---DYAFVHMERAEDAVEAIRGLDNT 134
Query: 62 --NGWRVELSHNSKGGGGRGGRGRGGGEDLKCYECGEPGHFAREC 104
G R+ + ++ R G G+ CY CG+ GH+++EC
Sbjct: 135 EFQGKRMHVQLST----SRLRTAPGMGDQSGCYRCGKEGHWSKEC 175
Score = 35.4 bits (80), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 1 MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRAL 58
M ++++GNL +E+++ F +G + + + Y FV +D+ A DAIR L
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIK---NYGFVHIEDKTAAEDAIRNL 55
>sp|Q64LC9|RBM4B_RAT RNA-binding protein 4B OS=Rattus norvegicus GN=Rbm4b PE=2 SV=2
Length = 357
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 9/105 (8%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGK 61
++++VGN+ P + ++L +F +G + + + YAFV + DAV+AIR LD
Sbjct: 78 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK---DYAFVHMERAEDAVEAIRGLDNT 134
Query: 62 --NGWRVELSHNSKGGGGRGGRGRGGGEDLKCYECGEPGHFAREC 104
G R+ + ++ R G G+ CY CG+ GH+++EC
Sbjct: 135 EFQGKRMHVQLST----SRLRTAPGMGDQSGCYRCGKEGHWSKEC 175
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 1 MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRAL 58
M ++++GNL +E+++ F +G + + + Y FV +D+ A DAIR L
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIK---NYGFVHIEDKTAAEDAIRNL 55
>sp|Q8VE92|RBM4B_MOUSE RNA-binding protein 4B OS=Mus musculus GN=Rbm4b PE=1 SV=1
Length = 357
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 9/105 (8%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGK 61
++++VGN+ P + ++L +F +G + + + YAFV + DAV+AIR LD
Sbjct: 78 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK---DYAFVHMERAEDAVEAIRGLDNT 134
Query: 62 --NGWRVELSHNSKGGGGRGGRGRGGGEDLKCYECGEPGHFAREC 104
G R+ + ++ R G G+ CY CG+ GH+++EC
Sbjct: 135 EFQGKRMHVQLST----SRLRTAPGMGDQSGCYRCGKEGHWSKEC 175
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 1 MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRAL 58
M ++++GNL +E+++ F +G + + + Y FV +D+ A DAIR L
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIK---NYGFVHIEDKTAAEDAIRNL 55
>sp|Q5R7H2|SRSF1_PONAB Serine/arginine-rich splicing factor 1 OS=Pongo abelii GN=SRSF1
PE=2 SV=3
Length = 248
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR--PPGYAFVEFDDRRDAVDAIRALDG 60
R+YVGNL P + +D+ED F +G +R + + R P +AFVEF+D RDA DA+ DG
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 61 --KNGWRVELS 69
+G+R+ +
Sbjct: 77 YDYDGYRLRVE 87
>sp|Q3YLA6|SRSF1_PIG Serine/arginine-rich splicing factor 1 OS=Sus scrofa GN=SRSF1
PE=2 SV=3
Length = 248
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR--PPGYAFVEFDDRRDAVDAIRALDG 60
R+YVGNL P + +D+ED F +G +R + + R P +AFVEF+D RDA DA+ DG
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 61 --KNGWRVELS 69
+G+R+ +
Sbjct: 77 YDYDGYRLRVE 87
>sp|Q6PDM2|SRSF1_MOUSE Serine/arginine-rich splicing factor 1 OS=Mus musculus GN=Srsf1
PE=1 SV=3
Length = 248
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR--PPGYAFVEFDDRRDAVDAIRALDG 60
R+YVGNL P + +D+ED F +G +R + + R P +AFVEF+D RDA DA+ DG
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 61 --KNGWRVELS 69
+G+R+ +
Sbjct: 77 YDYDGYRLRVE 87
>sp|Q07955|SRSF1_HUMAN Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1
PE=1 SV=2
Length = 248
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR--PPGYAFVEFDDRRDAVDAIRALDG 60
R+YVGNL P + +D+ED F +G +R + + R P +AFVEF+D RDA DA+ DG
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 61 --KNGWRVELS 69
+G+R+ +
Sbjct: 77 YDYDGYRLRVE 87
>sp|Q0VCY7|SRSF1_BOVIN Serine/arginine-rich splicing factor 1 OS=Bos taurus GN=SRSF1
PE=2 SV=1
Length = 248
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR--PPGYAFVEFDDRRDAVDAIRALDG 60
R+YVGNL P + +D+ED F +G +R + + R P +AFVEF+D RDA DA+ DG
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 61 --KNGWRVELS 69
+G+R+ +
Sbjct: 77 YDYDGYRLRVE 87
>sp|Q6NYA0|SRS1B_DANRE Serine/arginine-rich splicing factor 1B OS=Danio rerio GN=srsf1b
PE=2 SV=1
Length = 245
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR--PPGYAFVEFDDRRDAVDAIRALDG 60
R+YVGNL P + +D+ED F +G +R + + R P +AFVEF+D RDA DA+ DG
Sbjct: 16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 75
Query: 61 --KNGWRVELS 69
+G+R+ +
Sbjct: 76 YDYDGYRLRVE 86
>sp|Q08170|SRSF4_HUMAN Serine/arginine-rich splicing factor 4 OS=Homo sapiens GN=SRSF4
PE=1 SV=2
Length = 494
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 1 MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDG 60
M RVY+G L + ERD+E F+ +G + V + GY FVEFDD RDA DA+ L+G
Sbjct: 1 MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKN---GYGFVEFDDLRDADDAVYELNG 57
Query: 61 KN--GWRVELSH 70
K+ G RV + H
Sbjct: 58 KDLCGERVIVEH 69
>sp|Q8VE97|SRSF4_MOUSE Serine/arginine-rich splicing factor 4 OS=Mus musculus GN=Srsf4
PE=2 SV=1
Length = 489
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 1 MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDG 60
M RVY+G L + ERD+E F+ +G + V + GY FVEFDD RDA DA+ L+G
Sbjct: 1 MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKN---GYGFVEFDDLRDADDAVYELNG 57
Query: 61 KN--GWRVELSH 70
K+ G RV + H
Sbjct: 58 KDLCGERVIVEH 69
>sp|Q09167|SRSF5_RAT Serine/arginine-rich splicing factor 5 OS=Rattus norvegicus
GN=Srsf5 PE=2 SV=1
Length = 269
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 5/70 (7%)
Query: 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN 62
RV++G L+P E+D+E F+ +G +R + + R G+ FVEF+D RDA DA+ LDGK
Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKR---GFGFVEFEDPRDADDAVYELDGKE 61
Query: 63 --GWRVELSH 70
RV + H
Sbjct: 62 LCSERVTIEH 71
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGK 61
+R+ V NL RVS +DL+D R G + R VEF D +AI L GK
Sbjct: 108 NRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGK 167
Query: 62 --NGWRVEL 68
NG +++L
Sbjct: 168 EINGRKIKL 176
>sp|O35326|SRSF5_MOUSE Serine/arginine-rich splicing factor 5 OS=Mus musculus GN=Srsf5
PE=1 SV=2
Length = 269
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 5/70 (7%)
Query: 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN 62
RV++G L+P E+D+E F+ +G +R + + R G+ FVEF+D RDA DA+ LDGK
Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKR---GFGFVEFEDPRDADDAVYELDGKE 61
Query: 63 --GWRVELSH 70
RV + H
Sbjct: 62 LCSERVTIEH 71
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGK 61
+R+ V NL RVS +DL+D R G + R VEF D +AI L GK
Sbjct: 108 NRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGK 167
Query: 62 --NGWRVEL 68
NG +++L
Sbjct: 168 EINGRKIKL 176
>sp|Q13243|SRSF5_HUMAN Serine/arginine-rich splicing factor 5 OS=Homo sapiens GN=SRSF5
PE=1 SV=1
Length = 272
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 5/70 (7%)
Query: 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN 62
RV++G L+P E+D+E F+ +G +R + + R G+ FVEF+D RDA DA+ LDGK
Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKR---GFGFVEFEDPRDADDAVYELDGKE 61
Query: 63 --GWRVELSH 70
RV + H
Sbjct: 62 LCSERVTIEH 71
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGK 61
+R+ V NL RVS +DL+D R G + R VEF D +AI L GK
Sbjct: 108 NRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGK 167
Query: 62 --NGWRVEL 68
NG +++L
Sbjct: 168 EINGRKIKL 176
>sp|Q23120|RSP2_CAEEL Probable splicing factor, arginine/serine-rich 2
OS=Caenorhabditis elegans GN=rsp-2 PE=3 SV=1
Length = 281
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 43/70 (61%), Gaps = 5/70 (7%)
Query: 1 MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDG 60
M RVY+G L R S+RD+E FR +G L V + G+ FV+F D+RDA DA+ L+G
Sbjct: 1 MVRVYIGRLPNRASDRDVEHFFRGYGKLSDVIMKN---GFGFVDFQDQRDADDAVHDLNG 57
Query: 61 KN--GWRVEL 68
K G RV L
Sbjct: 58 KELCGERVIL 67
>sp|Q94901|LARK_DROME RNA-binding protein lark OS=Drosophila melanogaster GN=lark PE=1
SV=1
Length = 352
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGK 61
++++VGNL + ++ + F+ +G + + R Y FV D D DAI+ L+G+
Sbjct: 86 TKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVR---NYGFVHLDCVGDVQDAIKELNGR 142
Query: 62 ----NGWRVELSHNSKGGGGRGGRGRGGGEDLKCYECGEPGHFARECRLRIGSRGLGSGR 117
+V++S + R G G+ +CY CG GH+++EC GS G G
Sbjct: 143 VVDGQPLKVQVSTS------RVRPKPGMGDPEQCYRCGRSGHWSKECPRLYGSAG---GG 193
Query: 118 RRSPSP 123
R PSP
Sbjct: 194 REPPSP 199
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDG 60
++++GNLD + +L F +G + V + Y FV + + DAI+ L+G
Sbjct: 8 KLFIGNLDEKTQATELRALFEKYGTVVECDVVK---NYGFVHMETEQQGRDAIQNLNG 62
>sp|Q9D0B0|SRSF9_MOUSE Serine/arginine-rich splicing factor 9 OS=Mus musculus GN=Srsf9
PE=1 SV=1
Length = 222
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 50/92 (54%), Gaps = 15/92 (16%)
Query: 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRP--PGYAFVEFDDRRDAVDAIRALDG 60
R+YVGNL V E+DLED F +G +R + + R +AFV F+D RDA DAI G
Sbjct: 16 RIYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIY---G 72
Query: 61 KNGW-------RVELSHNSKGGGGRGGRGRGG 85
+NG+ RVE GGRGG RG
Sbjct: 73 RNGYDYGQCRLRVEFPRTY---GGRGGWPRGA 101
>sp|P26686|SRR55_DROME Serine-arginine protein 55 OS=Drosophila melanogaster GN=B52 PE=1
SV=4
Length = 376
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGK 61
SRVYVG L V ERDLE F+ +G R + + GY FVEF+D RDA DA+ L+GK
Sbjct: 4 SRVYVGGLPYGVRERDLERFFKGYGRTRDILIKN---GYGFVEFEDYRDADDAVYELNGK 60
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGK- 61
R+ V NL RVS +DL+D R G + ++ VEF D AI LD
Sbjct: 121 RLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTE 180
Query: 62 -NGWRVEL 68
NG R+ L
Sbjct: 181 LNGRRIHL 188
>sp|Q56JZ7|ZCRB1_BOVIN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Bos taurus GN=ZCRB1 PE=2 SV=1
Length = 217
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWV-----ARRPPGYAFVEFDDRRDAVDAIR 56
S VYV NL ++ DL F +G + V + RR G AF+ F D+ A + R
Sbjct: 10 STVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDKDSAQNCTR 69
Query: 57 ALDGKNGWRVELSHNSKGGGGRGG---RGRGGGEDLKCYECGEPGHFAREC 104
A++ K + + + GR R R + KCYECGE GH + C
Sbjct: 70 AINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYAC 120
>sp|Q499V6|ZCRB1_RAT Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Rattus norvegicus GN=Zcrb1 PE=2 SV=1
Length = 217
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWV-----ARRPPGYAFVEFDDRRDAVDAIR 56
S VYV NL ++ DL F +G + V + R+ G AF+ F D+ A++ R
Sbjct: 10 STVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCTR 69
Query: 57 ALDGKNGWRVELSHNSKGGGGRGG---RGRGGGEDLKCYECGEPGHFAREC 104
A++ K + + + GR R R + KCYECGE GH + C
Sbjct: 70 AINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYAC 120
>sp|Q9CZ96|ZCRB1_MOUSE Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Mus musculus GN=Zcrb1 PE=1 SV=1
Length = 217
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWV-----ARRPPGYAFVEFDDRRDAVDAIR 56
S VYV NL ++ DL F +G + V + R+ G AF+ F D+ A++ R
Sbjct: 10 STVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCTR 69
Query: 57 ALDGKNGWRVELSHNSKGGGGRGG---RGRGGGEDLKCYECGEPGHFAREC 104
A++ K + + + GR R R + KCYECGE GH + C
Sbjct: 70 AINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYAC 120
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.141 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,127,196
Number of Sequences: 539616
Number of extensions: 4230279
Number of successful extensions: 24000
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 698
Number of HSP's that attempted gapping in prelim test: 20809
Number of HSP's gapped (non-prelim): 3077
length of query: 223
length of database: 191,569,459
effective HSP length: 113
effective length of query: 110
effective length of database: 130,592,851
effective search space: 14365213610
effective search space used: 14365213610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)