Query 041602
Match_columns 223
No_of_seqs 258 out of 2536
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 15:00:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041602.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041602hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.7 7E-18 2.4E-22 124.7 9.8 72 2-73 20-98 (99)
2 3pgw_S U1-70K; protein-RNA com 99.7 5.4E-17 1.8E-21 149.1 17.0 72 2-73 103-181 (437)
3 3beg_B Splicing factor, argini 99.7 6.3E-18 2.2E-22 127.9 8.3 59 2-62 17-75 (115)
4 1x4c_A Splicing factor, argini 99.7 5.8E-17 2E-21 120.9 12.4 71 2-74 16-93 (108)
5 2hvz_A Splicing factor, argini 99.7 7.7E-17 2.6E-21 118.4 10.6 73 2-74 1-75 (101)
6 1x4a_A Splicing factor, argini 99.7 1.1E-16 3.9E-21 119.2 11.5 74 2-75 23-100 (109)
7 4f25_A Polyadenylate-binding p 99.7 4.9E-17 1.7E-21 122.9 9.4 72 2-73 6-82 (115)
8 2dnz_A Probable RNA-binding pr 99.7 1.4E-16 4.9E-21 115.4 11.5 74 2-75 6-86 (95)
9 1h2v_Z 20 kDa nuclear CAP bind 99.7 6.6E-17 2.3E-21 127.9 10.4 72 2-73 40-118 (156)
10 2lkz_A RNA-binding protein 5; 99.7 2.7E-17 9.1E-22 121.0 7.3 72 1-72 9-93 (95)
11 2dnq_A RNA-binding protein 4B; 99.7 1.7E-16 5.7E-21 114.3 11.4 71 1-74 8-80 (90)
12 2dgt_A RNA-binding protein 30; 99.7 2.1E-16 7.3E-21 114.2 11.3 71 2-75 11-83 (92)
13 1whw_A Hypothetical protein ri 99.7 2.2E-16 7.7E-21 115.3 11.5 73 2-74 9-88 (99)
14 3s8s_A Histone-lysine N-methyl 99.7 8.6E-17 2.9E-21 121.1 9.4 72 2-73 7-85 (110)
15 1sjq_A Polypyrimidine tract-bi 99.7 8.6E-17 2.9E-21 120.6 9.2 72 2-74 17-92 (105)
16 2fy1_A RNA-binding motif prote 99.7 2.3E-16 7.9E-21 119.5 11.6 72 2-73 8-85 (116)
17 1x5t_A Splicing factor 3B subu 99.7 1.1E-16 3.9E-21 116.2 9.4 74 2-75 6-87 (96)
18 3ex7_B RNA-binding protein 8A; 99.7 1.8E-16 6E-21 120.9 10.8 71 2-72 23-102 (126)
19 2dgu_A Heterogeneous nuclear r 99.7 3.6E-16 1.2E-20 115.4 12.0 70 2-74 12-83 (103)
20 2cpf_A RNA binding motif prote 99.7 2E-16 6.9E-21 115.4 10.2 74 2-75 6-89 (98)
21 1x5s_A Cold-inducible RNA-bind 99.7 2.9E-16 9.9E-21 115.3 10.9 72 2-73 13-91 (102)
22 2dgx_A KIAA0430 protein; RRM d 99.7 2.7E-16 9.2E-21 114.9 10.6 73 2-74 10-90 (96)
23 1u6f_A Tcubp1, RNA-binding pro 99.7 3E-16 1E-20 121.6 11.4 74 2-75 43-123 (139)
24 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.6E-16 5.4E-21 116.8 9.2 74 2-75 13-93 (102)
25 2dnm_A SRP46 splicing factor; 99.7 2E-16 6.7E-21 116.6 9.7 73 2-74 14-93 (103)
26 2cqi_A Nucleolysin TIAR; RNA r 99.7 5.1E-16 1.8E-20 114.3 11.9 73 2-74 16-93 (103)
27 2wbr_A GW182, gawky, LD47780P; 99.7 1.6E-16 5.4E-21 115.4 8.8 69 2-71 8-78 (89)
28 2cq3_A RNA-binding protein 9; 99.7 6.5E-16 2.2E-20 113.8 12.2 74 2-75 16-94 (103)
29 2dgs_A DAZ-associated protein 99.7 4.3E-16 1.5E-20 114.0 11.1 72 2-74 11-89 (99)
30 1x5u_A Splicing factor 3B subu 99.7 3.4E-16 1.2E-20 115.5 10.6 73 2-74 16-95 (105)
31 3md1_A Nuclear and cytoplasmic 99.7 3.7E-16 1.3E-20 110.3 10.3 73 2-74 2-81 (83)
32 2cpd_A Apobec-1 stimulating pr 99.7 7E-16 2.4E-20 112.9 12.0 71 2-75 16-90 (99)
33 2dnp_A RNA-binding protein 14; 99.7 3.8E-16 1.3E-20 112.5 10.3 70 2-74 10-81 (90)
34 4a8x_A RNA-binding protein wit 99.7 3.9E-16 1.3E-20 111.2 10.2 72 2-73 5-84 (88)
35 2lxi_A RNA-binding protein 10; 99.7 8.4E-17 2.9E-21 116.9 6.6 74 2-75 2-84 (91)
36 1x4d_A Matrin 3; structural ge 99.7 1.6E-16 5.6E-21 118.5 8.3 71 2-73 16-91 (102)
37 2cph_A RNA binding motif prote 99.7 5E-16 1.7E-20 114.9 10.9 72 2-73 16-96 (107)
38 2kvi_A Nuclear polyadenylated 99.7 3.5E-16 1.2E-20 114.2 9.9 69 2-73 11-84 (96)
39 3bs9_A Nucleolysin TIA-1 isofo 99.7 3.8E-16 1.3E-20 111.2 9.8 72 2-73 7-85 (87)
40 2cq0_A Eukaryotic translation 99.7 3.4E-16 1.2E-20 115.3 9.7 74 2-75 16-96 (103)
41 3mdf_A Peptidyl-prolyl CIS-tra 99.7 3.5E-16 1.2E-20 111.0 9.4 70 2-71 8-84 (85)
42 2jvr_A Nucleolar protein 3; RN 99.7 1.9E-16 6.5E-21 119.7 8.4 71 2-72 29-103 (111)
43 2d9p_A Polyadenylate-binding p 99.7 2.9E-16 9.9E-21 115.7 9.2 72 2-73 16-92 (103)
44 3r27_A HnRNP L, heterogeneous 99.7 4.2E-16 1.4E-20 115.9 10.0 71 2-73 22-96 (100)
45 1x4g_A Nucleolysin TIAR; struc 99.7 6.7E-16 2.3E-20 115.1 11.1 72 2-74 26-99 (109)
46 1wex_A Hypothetical protein (r 99.7 6.3E-16 2.2E-20 115.4 10.8 70 2-72 16-89 (104)
47 2do4_A Squamous cell carcinoma 99.7 5.4E-16 1.8E-20 113.6 10.1 73 2-74 18-96 (100)
48 1x4h_A RNA-binding protein 28; 99.7 7.2E-16 2.5E-20 114.7 11.0 74 2-75 16-102 (111)
49 2dgo_A Cytotoxic granule-assoc 99.7 1.6E-15 5.4E-20 113.8 12.8 74 2-75 16-96 (115)
50 1why_A Hypothetical protein ri 99.7 5.2E-16 1.8E-20 113.2 9.8 72 2-74 18-93 (97)
51 1wi8_A EIF-4B, eukaryotic tran 99.7 4.9E-16 1.7E-20 114.8 9.7 71 2-74 16-94 (104)
52 2dnh_A Bruno-like 5, RNA bindi 99.7 7.2E-16 2.5E-20 113.8 10.4 73 2-74 16-97 (105)
53 1wf1_A RNA-binding protein RAL 99.6 5.3E-16 1.8E-20 115.8 9.2 69 2-73 28-99 (110)
54 2cqh_A IGF-II mRNA-binding pro 99.6 3.5E-16 1.2E-20 113.2 7.9 72 1-74 8-83 (93)
55 3ucg_A Polyadenylate-binding p 99.6 9E-16 3.1E-20 109.7 10.0 72 2-74 7-85 (89)
56 2cq1_A PTB-like protein L; RRM 99.6 7.8E-16 2.7E-20 114.4 9.9 72 2-74 16-91 (101)
57 2dgp_A Bruno-like 4, RNA bindi 99.6 6.9E-16 2.4E-20 114.1 9.6 73 2-74 14-96 (106)
58 2x1f_A MRNA 3'-END-processing 99.6 1.1E-15 3.7E-20 111.3 10.5 73 2-74 3-82 (96)
59 2dgv_A HnRNP M, heterogeneous 99.6 5.4E-16 1.8E-20 111.7 8.8 73 2-74 9-86 (92)
60 3d2w_A TAR DNA-binding protein 99.6 8.3E-16 2.8E-20 111.2 9.8 69 2-74 12-84 (89)
61 2cqc_A Arginine/serine-rich sp 99.6 6.6E-16 2.2E-20 111.7 9.2 71 2-72 16-93 (95)
62 2xnq_A Nuclear polyadenylated 99.6 1.1E-15 3.8E-20 112.1 10.5 70 2-74 23-95 (97)
63 2cqd_A RNA-binding region cont 99.6 1.8E-15 6.1E-20 113.8 11.9 73 2-74 18-96 (116)
64 2cpj_A Non-POU domain-containi 99.6 6.9E-16 2.3E-20 113.0 9.3 72 2-74 16-89 (99)
65 2cpz_A CUG triplet repeat RNA- 99.6 7.7E-16 2.6E-20 115.7 9.8 74 2-75 26-106 (115)
66 2la4_A Nuclear and cytoplasmic 99.6 5.1E-16 1.7E-20 113.9 8.4 71 2-73 28-100 (101)
67 1p27_B RNA-binding protein 8A; 99.6 5.3E-16 1.8E-20 114.7 8.4 70 2-71 24-100 (106)
68 2cpi_A CCR4-NOT transcription 99.6 5.7E-16 2E-20 116.1 8.6 74 2-75 16-102 (111)
69 2ywk_A Putative RNA-binding pr 99.6 1.1E-15 3.8E-20 110.6 9.8 71 2-72 17-93 (95)
70 2do0_A HnRNP M, heterogeneous 99.6 2.4E-15 8.3E-20 112.5 11.9 72 2-73 16-93 (114)
71 3zzy_A Polypyrimidine tract-bi 99.6 1.2E-15 4E-20 118.6 10.4 74 1-74 28-106 (130)
72 2div_A TRNA selenocysteine ass 99.6 3.5E-16 1.2E-20 114.3 7.0 74 2-75 10-95 (99)
73 1oo0_B CG8781-PA, drosophila Y 99.6 1.2E-15 4.2E-20 113.5 9.9 72 2-73 27-105 (110)
74 3ns6_A Eukaryotic translation 99.6 2.1E-16 7.2E-21 116.5 5.6 71 2-72 7-91 (100)
75 3p5t_L Cleavage and polyadenyl 99.6 1.9E-16 6.3E-21 114.3 5.0 73 2-74 2-83 (90)
76 2cpe_A RNA-binding protein EWS 99.6 1.2E-15 4.2E-20 114.1 9.6 74 2-75 16-104 (113)
77 2i2y_A Fusion protein consists 99.6 7.5E-16 2.6E-20 121.0 8.8 72 2-73 74-147 (150)
78 2e5h_A Zinc finger CCHC-type a 99.6 1.2E-15 4.1E-20 110.3 9.2 70 2-71 17-93 (94)
79 2ad9_A Polypyrimidine tract-bi 99.6 6.1E-16 2.1E-20 118.5 7.9 71 2-73 32-106 (119)
80 2e5j_A Methenyltetrahydrofolat 99.6 1.1E-15 3.8E-20 111.6 8.8 71 2-73 20-93 (97)
81 1wf0_A TDP-43, TAR DNA-binding 99.6 3.4E-16 1.2E-20 112.2 5.9 74 2-75 6-79 (88)
82 2jvo_A Nucleolar protein 3; nu 99.6 1.3E-15 4.5E-20 114.0 9.2 70 2-74 32-103 (108)
83 1whx_A Hypothetical protein ri 99.6 1.1E-15 3.6E-20 115.0 8.7 70 2-72 11-82 (111)
84 2ytc_A PRE-mRNA-splicing facto 99.6 1.2E-15 4E-20 108.3 8.4 69 2-71 13-84 (85)
85 2dng_A Eukaryotic translation 99.6 2.4E-15 8.3E-20 110.8 10.0 71 2-74 16-93 (103)
86 1x4b_A Heterogeneous nuclear r 99.6 2.1E-15 7.2E-20 113.4 9.9 73 2-75 28-107 (116)
87 2jwn_A Embryonic polyadenylate 99.6 2.2E-15 7.6E-20 114.5 10.0 72 2-74 37-115 (124)
88 2dhg_A TRNA selenocysteine ass 99.6 1.8E-15 6.1E-20 111.5 9.2 72 2-73 10-89 (104)
89 3ulh_A THO complex subunit 4; 99.6 2.2E-15 7.5E-20 111.5 9.6 70 2-71 30-105 (107)
90 2err_A Ataxin-2-binding protei 99.6 1.4E-15 4.7E-20 113.8 8.4 72 2-73 30-106 (109)
91 2cq4_A RNA binding motif prote 99.6 2.1E-15 7.1E-20 113.1 9.4 71 2-73 26-103 (114)
92 1s79_A Lupus LA protein; RRM, 99.6 1.2E-15 4.1E-20 113.6 7.9 68 2-70 12-87 (103)
93 1x5p_A Negative elongation fac 99.6 7.8E-15 2.7E-19 107.0 11.8 71 2-75 16-88 (97)
94 2krb_A Eukaryotic translation 99.6 6.9E-16 2.4E-20 109.0 5.9 61 2-62 2-71 (81)
95 2fc9_A NCL protein; structure 99.6 2.8E-15 9.7E-20 109.9 9.3 74 2-75 16-92 (101)
96 1fjc_A Nucleolin RBD2, protein 99.6 8.6E-16 2.9E-20 111.6 6.5 74 2-75 17-92 (96)
97 1x4f_A Matrin 3; structural ge 99.6 8.4E-16 2.9E-20 116.5 6.4 71 2-73 26-101 (112)
98 2e5i_A Heterogeneous nuclear r 99.6 4.6E-15 1.6E-19 114.4 10.6 72 2-74 26-102 (124)
99 1x4e_A RNA binding motif, sing 99.6 5.2E-16 1.8E-20 110.3 4.9 61 2-62 6-71 (85)
100 2ki2_A SS-DNA binding protein 99.6 3.1E-16 1E-20 112.7 3.7 72 1-73 1-79 (90)
101 1p1t_A Cleavage stimulation fa 99.6 1.7E-15 5.8E-20 111.4 7.6 72 2-73 9-87 (104)
102 2la6_A RNA-binding protein FUS 99.6 2.5E-15 8.5E-20 110.0 8.3 69 2-70 14-97 (99)
103 2cqp_A RNA-binding protein 12; 99.6 9E-16 3.1E-20 111.9 5.8 71 2-72 16-93 (98)
104 2kxn_B Transformer-2 protein h 99.6 2.4E-15 8.1E-20 116.2 8.4 72 2-73 47-125 (129)
105 1wez_A HnRNP H', FTP-3, hetero 99.6 1.5E-15 5.2E-20 112.6 6.9 72 2-75 16-93 (102)
106 1nu4_A U1A RNA binding domain; 99.6 3.3E-15 1.1E-19 108.5 8.5 73 2-74 9-89 (97)
107 2nlw_A Eukaryotic translation 99.6 2.6E-15 9E-20 111.4 8.1 72 2-73 16-99 (105)
108 2jrs_A RNA-binding protein 39; 99.6 2.9E-15 9.9E-20 112.0 8.4 72 2-73 27-105 (108)
109 2khc_A Testis-specific RNP-typ 99.6 2.5E-15 8.7E-20 113.2 8.0 70 2-71 41-117 (118)
110 2a3j_A U1 small nuclear ribonu 99.6 3.6E-15 1.2E-19 115.2 9.0 71 2-72 30-108 (127)
111 2ek1_A RNA-binding protein 12; 99.6 1E-15 3.5E-20 110.9 5.5 71 2-72 16-93 (95)
112 2dh8_A DAZ-associated protein 99.6 4.6E-15 1.6E-19 109.5 9.0 73 2-75 17-96 (105)
113 2cpx_A Hypothetical protein FL 99.6 3.1E-15 1.1E-19 112.1 8.2 72 2-73 26-104 (115)
114 3n9u_C Cleavage and polyadenyl 99.6 3.5E-15 1.2E-19 119.0 8.9 71 2-72 56-135 (156)
115 2kt5_A RNA and export factor-b 99.6 6.2E-15 2.1E-19 112.2 9.9 73 2-74 36-114 (124)
116 2mss_A Protein (musashi1); RNA 99.6 1.6E-15 5.4E-20 105.3 5.9 67 3-70 1-74 (75)
117 1sjr_A Polypyrimidine tract-bi 99.6 3.9E-15 1.3E-19 119.9 9.1 74 1-74 46-124 (164)
118 1wg1_A KIAA1579 protein, homol 99.6 2.3E-15 7.9E-20 108.1 6.9 70 2-73 6-77 (88)
119 2dis_A Unnamed protein product 99.6 4E-15 1.4E-19 110.4 8.4 72 2-73 9-91 (109)
120 3s7r_A Heterogeneous nuclear r 99.6 4.7E-15 1.6E-19 105.7 8.4 68 2-70 12-86 (87)
121 2cqg_A TDP-43, TAR DNA-binding 99.6 7.1E-15 2.4E-19 108.1 9.6 73 2-74 16-93 (103)
122 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.2E-15 4.2E-20 106.1 5.1 68 2-70 1-75 (77)
123 1rk8_A CG8781-PA, CG8781-PA pr 99.6 4.5E-15 1.5E-19 118.7 9.1 73 2-74 73-152 (165)
124 2kn4_A Immunoglobulin G-bindin 99.6 7.5E-15 2.6E-19 115.9 10.2 73 2-74 71-150 (158)
125 3lqv_A PRE-mRNA branch site pr 99.6 6.2E-15 2.1E-19 110.6 9.2 70 2-71 9-82 (115)
126 3tyt_A Heterogeneous nuclear r 99.6 6.3E-15 2.1E-19 122.2 9.9 72 2-73 5-79 (205)
127 3q2s_C Cleavage and polyadenyl 99.6 1.7E-15 5.9E-20 127.8 6.6 70 2-71 69-147 (229)
128 2dgw_A Probable RNA-binding pr 99.6 7E-15 2.4E-19 105.8 8.8 71 2-74 11-87 (91)
129 2cq2_A Hypothetical protein LO 99.6 5.8E-15 2E-19 112.2 8.7 60 2-62 26-87 (114)
130 2fc8_A NCL protein; structure 99.6 4.5E-15 1.5E-19 108.9 7.7 74 2-75 16-93 (102)
131 2e5g_A U6 snRNA-specific termi 99.6 1.5E-14 5.2E-19 104.9 10.3 72 1-73 8-81 (94)
132 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 8.5E-15 2.9E-19 112.9 9.3 69 2-70 64-139 (140)
133 2j76_E EIF-4B, EIF4B, eukaryot 99.6 2.7E-15 9.2E-20 110.3 5.6 69 2-72 20-96 (100)
134 1wg5_A Heterogeneous nuclear r 99.6 9.6E-15 3.3E-19 108.2 8.6 71 2-73 16-93 (104)
135 2hzc_A Splicing factor U2AF 65 99.6 1E-14 3.6E-19 103.7 8.4 67 2-70 7-86 (87)
136 2rs2_A Musashi-1, RNA-binding 99.6 1.3E-14 4.4E-19 108.6 9.3 72 2-74 26-104 (109)
137 2m2b_A RNA-binding protein 10; 99.6 4.1E-15 1.4E-19 114.6 6.2 72 2-74 24-108 (131)
138 2lea_A Serine/arginine-rich sp 99.5 4.6E-15 1.6E-19 115.3 6.3 73 2-74 48-127 (135)
139 1fj7_A Nucleolin RBD1, protein 99.5 2.8E-15 9.6E-20 109.9 4.5 72 2-74 18-95 (101)
140 2dnn_A RNA-binding protein 12; 99.5 1.6E-14 5.6E-19 108.6 8.7 70 2-73 17-92 (109)
141 2lcw_A RNA-binding protein FUS 99.3 4.5E-16 1.5E-20 117.3 0.0 73 2-74 8-95 (116)
142 4f02_A Polyadenylate-binding p 99.5 2.7E-14 9.1E-19 118.2 9.8 71 1-71 15-92 (213)
143 2db1_A Heterogeneous nuclear r 99.5 7.4E-15 2.5E-19 111.4 5.9 70 2-72 18-96 (118)
144 1x5o_A RNA binding motif, sing 99.5 2.9E-14 9.9E-19 106.7 9.0 61 2-62 26-90 (114)
145 2dnl_A Cytoplasmic polyadenyla 99.5 1.1E-14 3.7E-19 109.6 6.6 67 2-69 9-83 (114)
146 2cpy_A RNA-binding protein 12; 99.5 9.7E-15 3.3E-19 109.9 6.2 71 2-73 16-93 (114)
147 2e44_A Insulin-like growth fac 99.5 2.6E-14 9E-19 103.6 8.1 72 2-73 16-91 (96)
148 1iqt_A AUF1, heterogeneous nuc 99.5 4.4E-15 1.5E-19 102.9 3.8 66 3-69 1-73 (75)
149 2hgn_A Heterogeneous nuclear r 99.5 3.5E-15 1.2E-19 117.1 3.0 71 2-74 47-123 (139)
150 2hgl_A HNRPF protein, heteroge 99.5 9.3E-15 3.2E-19 114.2 5.2 70 2-72 45-123 (136)
151 2f3j_A RNA and export factor b 99.5 3.5E-14 1.2E-18 115.3 8.4 69 2-70 89-165 (177)
152 1wel_A RNA-binding protein 12; 99.5 3.8E-15 1.3E-19 113.6 2.3 69 2-71 26-101 (124)
153 2bz2_A Negative elongation fac 99.5 4.8E-14 1.6E-18 107.7 8.2 70 2-74 40-111 (121)
154 3egn_A RNA-binding protein 40; 99.5 3.6E-14 1.2E-18 110.5 7.7 72 2-73 46-129 (143)
155 2xs2_A Deleted in azoospermia- 99.5 2.9E-14 1E-18 104.6 6.3 69 2-72 10-84 (102)
156 1fxl_A Paraneoplastic encephal 99.5 1.6E-13 5.4E-18 107.4 10.8 71 2-72 3-80 (167)
157 4f02_A Polyadenylate-binding p 99.5 7.1E-14 2.4E-18 115.6 9.2 72 2-73 104-180 (213)
158 1b7f_A Protein (SXL-lethal pro 99.5 1.4E-13 4.9E-18 108.1 10.3 72 2-73 4-82 (168)
159 2lmi_A GRSF-1, G-rich sequence 99.5 1E-14 3.6E-19 108.5 3.1 69 2-71 12-89 (107)
160 3md3_A Nuclear and cytoplasmic 99.5 1.2E-13 4.1E-18 107.9 9.1 72 2-73 1-78 (166)
161 2diu_A KIAA0430 protein; struc 99.5 1.2E-13 4.1E-18 101.3 8.3 66 3-73 11-83 (96)
162 2yh0_A Splicing factor U2AF 65 99.5 1.8E-13 6.2E-18 110.4 10.0 74 2-75 115-195 (198)
163 3nmr_A Cugbp ELAV-like family 99.5 1.2E-13 4.1E-18 109.0 8.4 61 2-62 4-71 (175)
164 3md3_A Nuclear and cytoplasmic 99.5 1.9E-13 6.6E-18 106.8 9.4 71 2-72 88-165 (166)
165 2g4b_A Splicing factor U2AF 65 99.5 1.7E-13 5.7E-18 108.3 9.0 70 2-71 95-171 (172)
166 2adc_A Polypyrimidine tract-bi 99.5 1.3E-13 4.5E-18 115.2 8.8 72 2-73 35-109 (229)
167 2dha_A FLJ20171 protein; RRM d 99.5 2.6E-14 8.9E-19 109.8 4.1 70 2-72 24-103 (123)
168 2qfj_A FBP-interacting repress 99.5 2.3E-13 7.7E-18 111.3 9.7 70 2-71 29-105 (216)
169 2qfj_A FBP-interacting repress 99.5 3.1E-13 1.1E-17 110.5 10.3 73 2-74 126-205 (216)
170 1qm9_A Polypyrimidine tract-bi 99.4 1.1E-13 3.7E-18 112.4 7.1 71 2-72 4-77 (198)
171 1l3k_A Heterogeneous nuclear r 99.4 2.3E-13 8E-18 109.6 9.0 72 2-74 105-183 (196)
172 3nmr_A Cugbp ELAV-like family 99.4 2.7E-13 9.3E-18 107.0 8.7 70 2-71 96-174 (175)
173 2hgm_A HNRPF protein, heteroge 99.4 9.3E-14 3.2E-18 107.2 5.7 68 2-71 43-118 (126)
174 3pgw_A U1-A; protein-RNA compl 99.4 4.3E-13 1.5E-17 114.6 10.1 71 2-72 208-281 (282)
175 3u1l_A PRE-mRNA-splicing facto 99.4 2.7E-13 9.1E-18 115.4 8.4 60 2-62 135-203 (240)
176 1l3k_A Heterogeneous nuclear r 99.4 4.5E-13 1.5E-17 107.9 8.9 70 2-72 14-90 (196)
177 1fje_B Nucleolin RBD12, protei 99.4 3.2E-13 1.1E-17 107.3 7.9 72 2-73 100-173 (175)
178 2cjk_A Nuclear polyadenylated 99.4 2.7E-13 9.1E-18 106.6 7.2 71 2-73 88-165 (167)
179 2voo_A Lupus LA protein; RNA-b 99.4 3.8E-13 1.3E-17 110.6 8.2 71 2-72 110-185 (193)
180 1fxl_A Paraneoplastic encephal 99.4 6.2E-13 2.1E-17 104.0 9.0 61 2-62 89-154 (167)
181 2d9o_A DNAJ (HSP40) homolog, s 99.4 9.1E-13 3.1E-17 97.7 9.1 62 11-72 27-88 (100)
182 1b7f_A Protein (SXL-lethal pro 99.4 7.2E-13 2.5E-17 104.0 9.0 68 2-69 90-166 (168)
183 3pgw_A U1-A; protein-RNA compl 99.4 8.8E-13 3E-17 112.7 10.1 72 2-73 10-89 (282)
184 2cjk_A Nuclear polyadenylated 99.4 5.3E-13 1.8E-17 104.8 6.8 70 2-71 4-78 (167)
185 2adc_A Polypyrimidine tract-bi 99.4 1.5E-12 5E-17 108.8 9.8 72 2-73 152-227 (229)
186 1qm9_A Polypyrimidine tract-bi 99.4 8.2E-13 2.8E-17 107.1 7.6 71 2-72 121-195 (198)
187 3sde_A Paraspeckle component 1 99.4 1.2E-12 4E-17 111.6 8.9 70 2-72 23-94 (261)
188 3tyt_A Heterogeneous nuclear r 99.4 1.2E-12 4.2E-17 108.3 7.5 61 2-62 124-189 (205)
189 2g4b_A Splicing factor U2AF 65 99.4 3.2E-12 1.1E-16 100.8 9.5 70 2-73 5-87 (172)
190 3tht_A Alkylated DNA repair pr 99.3 1.2E-12 4.1E-17 116.8 7.9 60 2-62 19-80 (345)
191 2j8a_A Histone-lysine N-methyl 99.3 1.5E-12 5.3E-17 100.7 6.8 70 2-71 3-93 (136)
192 3smz_A Protein raver-1, ribonu 99.3 4.7E-12 1.6E-16 108.3 10.3 69 2-72 23-93 (284)
193 2pe8_A Splicing factor 45; RRM 99.3 8.2E-12 2.8E-16 93.1 9.8 71 2-72 9-92 (105)
194 2yh0_A Splicing factor U2AF 65 99.3 5.5E-12 1.9E-16 101.6 9.4 71 2-74 5-88 (198)
195 2dit_A HIV TAT specific factor 99.3 9.9E-12 3.4E-16 93.0 10.0 73 2-74 16-102 (112)
196 2ghp_A U4/U6 snRNA-associated 99.3 4.1E-12 1.4E-16 109.1 8.7 71 2-73 211-290 (292)
197 2ghp_A U4/U6 snRNA-associated 99.3 7.7E-12 2.6E-16 107.3 9.0 69 2-71 42-115 (292)
198 1fje_B Nucleolin RBD12, protei 99.3 1.6E-12 5.6E-17 103.1 4.2 71 2-73 14-90 (175)
199 3smz_A Protein raver-1, ribonu 99.3 6.9E-12 2.4E-16 107.2 7.9 73 2-74 185-264 (284)
200 3sde_A Paraspeckle component 1 99.2 1.1E-11 3.8E-16 105.5 7.4 71 2-72 97-177 (261)
201 1jmt_A Splicing factor U2AF 35 99.2 5.6E-12 1.9E-16 93.8 3.4 66 6-71 20-103 (104)
202 3v4m_A Splicing factor U2AF 65 99.1 1.5E-10 5.2E-15 86.1 8.1 69 3-71 7-94 (105)
203 3ue2_A Poly(U)-binding-splicin 99.0 5.7E-10 2E-14 84.8 8.3 70 2-71 21-106 (118)
204 3s6e_A RNA-binding protein 39; 99.0 5.2E-10 1.8E-14 84.6 6.5 57 15-71 31-90 (114)
205 1owx_A Lupus LA protein, SS-B, 99.0 3E-09 1E-13 81.4 9.5 59 2-61 19-79 (121)
206 2dnr_A Synaptojanin-1; RRM dom 98.7 3.2E-08 1.1E-12 71.7 8.0 69 2-74 8-86 (91)
207 1ufw_A Synaptojanin 2; RNP dom 98.5 5E-07 1.7E-11 65.8 7.3 67 2-72 16-93 (95)
208 3dxb_A Thioredoxin N-terminall 98.3 6E-07 2E-11 74.1 6.4 58 14-71 142-210 (222)
209 2l9w_A U4/U6 snRNA-associated- 97.5 0.00035 1.2E-08 52.1 7.8 67 3-70 23-96 (117)
210 1uw4_A UPF3X; nonsense mediate 97.3 0.0017 5.9E-08 46.7 8.6 62 1-62 1-69 (91)
211 2dhx_A Poly (ADP-ribose) polym 97.2 0.0026 9E-08 46.8 9.5 53 2-57 9-66 (104)
212 1whv_A Poly(A)-specific ribonu 96.8 0.0037 1.3E-07 45.6 6.8 53 4-59 18-70 (100)
213 3ctr_A Poly(A)-specific ribonu 96.8 0.0032 1.1E-07 46.0 6.5 53 4-59 8-60 (101)
214 1wwh_A Nucleoporin 35, nucleop 96.5 0.014 4.7E-07 44.0 8.6 65 3-70 26-93 (119)
215 1wey_A Calcipressin 1; structu 96.5 0.0045 1.5E-07 45.6 5.7 70 2-72 6-82 (104)
216 3pq1_A Poly(A) RNA polymerase; 96.2 0.0025 8.7E-08 58.6 3.4 54 2-56 54-107 (464)
217 3ts2_A Protein LIN-28 homolog 95.1 0.0021 7.2E-08 50.3 -1.5 89 16-107 2-116 (148)
218 2l08_A Regulator of nonsense t 94.7 0.046 1.6E-06 39.7 4.9 60 3-62 11-77 (97)
219 2kn4_A Immunoglobulin G-bindin 93.5 0.041 1.4E-06 42.1 2.8 26 36-61 11-36 (158)
220 1u6p_A GAG polyprotein; MLV, A 92.9 0.17 5.9E-06 32.9 4.7 28 81-108 16-43 (56)
221 1a6b_B Momulv, zinc finger pro 91.8 0.4 1.4E-05 28.9 5.0 25 84-108 6-30 (40)
222 3d45_A Poly(A)-specific ribonu 91.3 0.65 2.2E-05 42.9 8.4 58 4-65 443-500 (507)
223 3p3d_A Nucleoporin 53; structu 90.7 0.21 7.3E-06 38.1 3.7 65 3-69 9-94 (132)
224 2i2y_A Fusion protein consists 86.9 0.21 7E-06 37.9 1.3 35 36-71 11-48 (150)
225 1dsq_A Nucleic acid binding pr 85.7 0.54 1.8E-05 25.4 2.3 19 89-107 3-21 (26)
226 2ysa_A Retinoblastoma-binding 69.4 3.1 0.00011 26.7 2.4 21 87-107 6-26 (55)
227 3j21_T 50S ribosomal protein L 66.9 23 0.0008 24.6 6.8 54 3-56 24-81 (86)
228 1nc8_A Nucleocapsid protein; H 62.9 6.9 0.00023 21.3 2.8 20 88-107 6-25 (29)
229 3arc_H Photosystem II reaction 62.4 3.4 0.00012 27.3 1.6 22 192-214 35-56 (65)
230 3lpe_A Putative transcription 60.2 23 0.00079 24.6 5.9 44 18-61 29-73 (92)
231 4eyt_A Telomerase associated p 58.7 46 0.0016 23.6 9.2 57 2-61 13-69 (129)
232 3pgw_S U1-70K; protein-RNA com 56.8 30 0.001 30.9 7.5 22 45-66 148-169 (437)
233 1cl4_A Protein (GAG polyprotei 49.1 17 0.00058 23.0 3.3 23 87-109 29-51 (60)
234 2ihx_A Nucleocapsid (NC) prote 48.7 8.9 0.0003 24.6 1.9 22 88-109 30-51 (61)
235 3fry_A Probable copper-exporti 47.4 50 0.0017 20.7 5.7 54 3-58 8-61 (73)
236 3u5e_X 60S ribosomal protein L 45.0 57 0.002 24.8 6.2 54 3-56 80-137 (142)
237 1vq8_S 50S ribosomal protein L 44.9 41 0.0014 23.3 5.0 51 3-53 23-77 (85)
238 3h7h_B Transcription elongatio 44.5 17 0.0006 26.2 3.1 35 27-61 40-74 (106)
239 4a17_R RPL23A, 60S ribosomal p 43.4 60 0.002 25.0 6.1 54 3-56 88-145 (150)
240 2cqf_A RNA-binding protein LIN 42.0 22 0.00075 22.9 3.0 19 88-106 7-25 (63)
241 3nyb_B Protein AIR2; polya RNA 40.9 13 0.00044 25.7 1.8 21 88-108 46-66 (83)
242 2li8_A Protein LIN-28 homolog 38.9 36 0.0012 22.8 3.8 23 85-107 21-43 (74)
243 2a51_A Nucleocapsid protein; s 36.1 26 0.0009 20.1 2.5 17 89-105 22-38 (39)
244 4e8u_A Putative uncharacterize 35.4 1E+02 0.0034 24.2 6.4 54 3-56 14-81 (172)
245 2zkr_s 60S ribosomal protein L 34.3 97 0.0033 23.9 6.1 51 4-54 95-149 (156)
246 2ec7_A GAG polyprotein (PR55GA 34.2 30 0.001 21.0 2.6 20 88-107 6-25 (49)
247 2g0c_A ATP-dependent RNA helic 30.7 1.1E+02 0.0037 19.7 6.0 56 3-62 2-63 (76)
248 1a1t_A Nucleocapsid protein; s 27.9 36 0.0012 21.0 2.2 18 89-106 13-30 (55)
249 3ts2_A Protein LIN-28 homolog 27.5 36 0.0012 25.9 2.6 21 88-108 119-139 (148)
250 2bl6_A Nucleocapsid protein P1 27.4 37 0.0013 19.2 2.0 18 90-107 2-19 (37)
251 2exu_A Transcription initiatio 26.0 40 0.0014 27.1 2.7 36 27-62 138-173 (200)
252 3swz_A Steroid 17-alpha-hydrox 25.0 1.3E+02 0.0045 26.0 6.2 48 5-56 18-69 (494)
253 2kt2_A Mercuric reductase; nme 23.8 1.2E+02 0.0041 17.9 6.6 55 1-56 1-58 (69)
254 3p8b_B Transcription antitermi 23.1 1.1E+02 0.0039 22.8 4.7 35 28-62 33-67 (152)
255 3arc_M Photosystem II reaction 23.0 43 0.0015 19.4 1.7 24 186-209 6-29 (36)
256 3fut_A Dimethyladenosine trans 22.9 92 0.0031 25.8 4.5 30 3-33 112-141 (271)
257 1cqm_A Ribosomal protein S6; a 21.8 1.1E+02 0.0038 21.3 4.2 49 9-57 10-77 (101)
258 3iz5_X 60S ribosomal protein L 21.7 1.5E+02 0.0052 22.7 5.1 51 4-54 91-145 (152)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.74 E-value=7e-18 Score=124.65 Aligned_cols=72 Identities=25% Similarity=0.417 Sum_probs=64.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||.++|+++|+++|++||+|..|.++. .++|||||+|.+.++|++|++.|||.. +..|.|.+++|
T Consensus 20 t~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 6899999999999999999999999999999974 357899999999999999999999998 77777777654
No 2
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.74 E-value=5.4e-17 Score=149.15 Aligned_cols=72 Identities=29% Similarity=0.624 Sum_probs=64.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||+.||+++|+++|++||+|+.|.|+. .++|||||+|.+.++|++||+.||+.. +..|.|.++..
T Consensus 103 ~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~ 181 (437)
T 3pgw_S 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181 (437)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence 6899999999999999999999999999999864 358999999999999999999999997 66666665544
No 3
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.73 E-value=6.3e-18 Score=127.89 Aligned_cols=59 Identities=37% Similarity=0.442 Sum_probs=56.2
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN 62 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~ 62 (223)
++|||+|||+++|+++|+++|++||+|+.|.|+.+ |||||+|++.++|++||+.||+.+
T Consensus 17 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~ 75 (115)
T 3beg_B 17 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTK 75 (115)
T ss_dssp CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCB
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCE
Confidence 58999999999999999999999999999999754 999999999999999999999987
No 4
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=5.8e-17 Score=120.93 Aligned_cols=71 Identities=31% Similarity=0.365 Sum_probs=65.2
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--c-----EEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--G-----WRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g-----~~V~v~~~~~~ 74 (223)
++|||+|||+++|+++|+++|++||+|+.|.|+.+ |||||+|.+.++|++||+.||+.. + ..|.|..+.++
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~ 93 (108)
T 1x4c_A 16 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPR 93 (108)
T ss_dssp CEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCC
Confidence 58999999999999999999999999999999855 999999999999999999999987 6 78888887654
No 5
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=7.7e-17 Score=118.39 Aligned_cols=73 Identities=52% Similarity=0.927 Sum_probs=64.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||.++|+++|+++|++||+|..|.++.+++|||||+|.+.++|++|++.||+.. +..|.+..+.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 6899999999999999999999999999999987779999999999999999999999887 555555555443
No 6
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-16 Score=119.16 Aligned_cols=74 Identities=41% Similarity=0.780 Sum_probs=65.7
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee--CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR--RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKGG 75 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~--~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~~ 75 (223)
++|||+|||.++|+++|+++|++||+|..|.|.. .++|||||+|.+.++|++|++.||+.. +..|.|.++.+..
T Consensus 23 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 100 (109)
T 1x4a_A 23 CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGR 100 (109)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCC
Confidence 6899999999999999999999999999999864 458999999999999999999999987 7777777765543
No 7
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.70 E-value=4.9e-17 Score=122.88 Aligned_cols=72 Identities=28% Similarity=0.484 Sum_probs=64.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC---CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR---PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~---~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||+++|+++|+++|++||+|..|.|+.+ ++|||||+|.+.++|++||+.||+.. +..|.|.++..
T Consensus 6 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 6 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 68999999999999999999999999999999753 47899999999999999999999997 77777766644
No 8
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.4e-16 Score=115.41 Aligned_cols=74 Identities=30% Similarity=0.531 Sum_probs=64.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||..+|+++|+++|++||+|..|.++. .++|||||+|.+.++|++|++.||+.. +..|.|.++.++
T Consensus 6 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 85 (95)
T 2dnz_A 6 SGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTER 85 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccc
Confidence 6899999999999999999999999999999974 357999999999999999999999987 555555555444
Q ss_pred C
Q 041602 75 G 75 (223)
Q Consensus 75 ~ 75 (223)
.
T Consensus 86 ~ 86 (95)
T 2dnz_A 86 L 86 (95)
T ss_dssp C
T ss_pred c
Confidence 3
No 9
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.70 E-value=6.6e-17 Score=127.93 Aligned_cols=72 Identities=25% Similarity=0.458 Sum_probs=63.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC-----CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR-----PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~-----~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||.++|+++|+++|++||+|..|.|+.+ ++|||||+|.+.++|++||+.||+.. +..|.|.++.+
T Consensus 40 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 118 (156)
T 1h2v_Z 40 CTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAG 118 (156)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 68999999999999999999999999999999753 46899999999999999999999987 66666666544
No 10
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.70 E-value=2.7e-17 Score=121.03 Aligned_cols=72 Identities=15% Similarity=0.372 Sum_probs=63.1
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCC--eEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC------cEEEE
Q 041602 1 MSRVYVGNLDPRVSERDLEDEFRMFGV--LRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN------GWRVE 67 (223)
Q Consensus 1 ~ttLfVgnLp~~~te~~L~~~F~~~G~--I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~------g~~V~ 67 (223)
|.||||+|||+++|+++|+++|++||. |.+|.++. .++|||||+|.+.++|++|++.||+.. |..|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 789999999999999999999999995 66888764 468999999999999999999999863 67777
Q ss_pred Eeecc
Q 041602 68 LSHNS 72 (223)
Q Consensus 68 v~~~~ 72 (223)
|.+++
T Consensus 89 V~~Ak 93 (95)
T 2lkz_A 89 VDFAK 93 (95)
T ss_dssp EEECC
T ss_pred EEEcc
Confidence 77664
No 11
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.7e-16 Score=114.33 Aligned_cols=71 Identities=25% Similarity=0.518 Sum_probs=63.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 1 MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 1 ~ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
.++|||+|||.++|+++|+++|++||+|..|.++ +|||||+|.+.++|++|++.||+.. +..|.+.++.++
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 8 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence 3689999999999999999999999999999998 8999999999999999999999976 555666665444
No 12
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.1e-16 Score=114.22 Aligned_cols=71 Identities=30% Similarity=0.561 Sum_probs=64.2
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKGG 75 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~~ 75 (223)
++|||+|||.++|+++|+++|++||+|..|.++ ++||||+|.+.++|++|++.||+.. +..|.+..+.++.
T Consensus 11 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 11 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 689999999999999999999999999999997 6799999999999999999999987 7777777765543
No 13
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.2e-16 Score=115.33 Aligned_cols=73 Identities=33% Similarity=0.499 Sum_probs=64.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||.++|+++|+++|++||+|..|.|+. .++|||||+|.+.++|++|++.||+.. +..|.|..+.++
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 88 (99)
T 1whw_A 9 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIK 88 (99)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 6899999999999999999999999999999964 357999999999999999999999987 666666666554
No 14
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.69 E-value=8.6e-17 Score=121.10 Aligned_cols=72 Identities=25% Similarity=0.304 Sum_probs=64.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
.+|||+|||+++|+++|+++|++||+|.+|.|+. +++|||||+|++.++|++|++.||+.. +..|.|..+..
T Consensus 7 ~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 7 KEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred cEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 5899999999999999999999999999999974 457999999999999999999999997 77777766643
No 15
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8.6e-17 Score=120.65 Aligned_cols=72 Identities=14% Similarity=0.188 Sum_probs=64.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCC--C--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGK--N--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~--~--g~~V~v~~~~~~ 74 (223)
++|||+|||+++||++|+++|++||+|++|.|+.+ +|||||+|++.++|++|++.|++. . +..|.|.++..+
T Consensus 17 ~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 17 RVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 68999999999999999999999999999999865 899999999999999999988753 3 777777777554
No 16
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.69 E-value=2.3e-16 Score=119.48 Aligned_cols=72 Identities=25% Similarity=0.595 Sum_probs=63.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||.++|+++|+++|++||+|..|.|+. .++|||||+|.+.++|++|++.||+.. +..|.|..+.+
T Consensus 8 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp CEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 6899999999999999999999999999999975 357999999999999999999999987 55555555543
No 17
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=116.16 Aligned_cols=74 Identities=34% Similarity=0.590 Sum_probs=65.2
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEE-EEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSV-WVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v-~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||.++|+++|+++|++||+|..+ .|+. .++|||||+|.+.++|++|++.||+.. +..|.+..+.+
T Consensus 6 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (96)
T 1x5t_A 6 SGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 85 (96)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecc
Confidence 689999999999999999999999999999 8864 358999999999999999999999987 67777776655
Q ss_pred CC
Q 041602 74 GG 75 (223)
Q Consensus 74 ~~ 75 (223)
+.
T Consensus 86 ~~ 87 (96)
T 1x5t_A 86 KD 87 (96)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 18
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.68 E-value=1.8e-16 Score=120.93 Aligned_cols=71 Identities=23% Similarity=0.519 Sum_probs=62.2
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC-----CCCEEEEEEcCHHHHHHHHHHhCCCC--c--EEEEEeecc
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR-----PPGYAFVEFDDRRDAVDAIRALDGKN--G--WRVELSHNS 72 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~-----~rGfaFV~F~~~e~A~~Al~~lng~~--g--~~V~v~~~~ 72 (223)
++|||+|||.++|+++|+++|++||+|..|.|+.+ ++|||||+|.+.++|++|++.||+.. + +.|+++...
T Consensus 23 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 102 (126)
T 3ex7_B 23 WILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVR 102 (126)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Confidence 58999999999999999999999999999999643 48999999999999999999999987 4 555555543
No 19
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.68 E-value=3.6e-16 Score=115.43 Aligned_cols=70 Identities=36% Similarity=0.583 Sum_probs=63.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||.++|+++|+++|++||+|..|.++ ++||||+|.+.++|++|++.||+.. +..|.|.++.+.
T Consensus 12 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 12 KVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 689999999999999999999999999999987 7899999999999999999999987 666777666544
No 20
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2e-16 Score=115.38 Aligned_cols=74 Identities=24% Similarity=0.519 Sum_probs=65.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee--------CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeec
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR--------RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHN 71 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~--------~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~ 71 (223)
++|||+|||.++|+++|+++|++||+|..|.|+. .++|||||+|.+.++|++|++.||+.. +..|.|..+
T Consensus 6 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (98)
T 2cpf_A 6 SGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRIS 85 (98)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 5899999999999999999999999999999874 346899999999999999999999987 777777776
Q ss_pred cCCC
Q 041602 72 SKGG 75 (223)
Q Consensus 72 ~~~~ 75 (223)
.+..
T Consensus 86 ~~~~ 89 (98)
T 2cpf_A 86 ERAT 89 (98)
T ss_dssp SCSS
T ss_pred cCCC
Confidence 5543
No 21
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.9e-16 Score=115.34 Aligned_cols=72 Identities=33% Similarity=0.664 Sum_probs=62.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||.++|+++|+++|++||+|..|.|+. .++|||||+|.+.++|++|++.||+.. +..|.|.++.+
T Consensus 13 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 91 (102)
T 1x5s_A 13 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGK 91 (102)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEEC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 6899999999999999999999999999999975 358999999999999999999999987 44444444433
No 22
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.7e-16 Score=114.89 Aligned_cols=73 Identities=25% Similarity=0.370 Sum_probs=65.4
Q ss_pred cEEEEecCCCCCCHHHHH----HHHHcCCCeEEEEEeeC--CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLE----DEFRMFGVLRSVWVARR--PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~----~~F~~~G~I~~v~i~~~--~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||.++++++|+ ++|++||+|..|.|+.+ .+|||||+|.+.++|++|++.||+.. +..|.|..+.+
T Consensus 10 ~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~ 89 (96)
T 2dgx_A 10 ADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATG 89 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 689999999999999999 99999999999999743 38999999999999999999999987 77777777654
Q ss_pred C
Q 041602 74 G 74 (223)
Q Consensus 74 ~ 74 (223)
.
T Consensus 90 ~ 90 (96)
T 2dgx_A 90 A 90 (96)
T ss_dssp S
T ss_pred C
Confidence 4
No 23
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.68 E-value=3e-16 Score=121.63 Aligned_cols=74 Identities=28% Similarity=0.467 Sum_probs=65.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC-----CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR-----PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~-----~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||.++|+++|+++|++||+|+.|.|+.+ ++|||||+|.+.++|++|++.||+.. +..|.|..+...
T Consensus 43 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 122 (139)
T 1u6f_A 43 RNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASG 122 (139)
T ss_dssp SEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 68999999999999999999999999999999743 47899999999999999999999987 666676666554
Q ss_pred C
Q 041602 75 G 75 (223)
Q Consensus 75 ~ 75 (223)
.
T Consensus 123 ~ 123 (139)
T 1u6f_A 123 H 123 (139)
T ss_dssp C
T ss_pred C
Confidence 3
No 24
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.6e-16 Score=116.79 Aligned_cols=74 Identities=27% Similarity=0.476 Sum_probs=65.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||.++|+++|+++|++||+|..|.|+. .++|||||+|.+.++|++|++.||+.. +..|.|.++.+.
T Consensus 13 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2cqb_A 13 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPM 92 (102)
T ss_dssp SCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCC
Confidence 5899999999999999999999999999999864 368999999999999999999999987 777777776554
Q ss_pred C
Q 041602 75 G 75 (223)
Q Consensus 75 ~ 75 (223)
.
T Consensus 93 ~ 93 (102)
T 2cqb_A 93 R 93 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 25
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2e-16 Score=116.58 Aligned_cols=73 Identities=38% Similarity=0.630 Sum_probs=63.9
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||.++++++|+++|++||+|..|.|+. .++|||||+|.+.++|++|++.||+.. +..|.|..+...
T Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2dnm_A 14 ITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYG 93 (103)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcC
Confidence 6899999999999999999999999999999874 357999999999999999999999987 555555555443
No 26
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.1e-16 Score=114.33 Aligned_cols=73 Identities=32% Similarity=0.500 Sum_probs=64.9
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC---CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR---PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~---~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||.++++++|+++|++||+|..|.|+.+ ++|||||+|.+.++|++|++.||+.. +..|.|.++.+.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2cqi_A 16 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTP 93 (103)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCT
T ss_pred CEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCC
Confidence 68999999999999999999999999999999753 57999999999999999999999987 666777666543
No 27
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.67 E-value=1.6e-16 Score=115.41 Aligned_cols=69 Identities=20% Similarity=0.173 Sum_probs=62.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeec
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHN 71 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~ 71 (223)
..|||+||++.+||++|+++|.+||+|..+.+.. ++|||||+|.++++|++|++.||+.. +..|.+..+
T Consensus 8 ~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 8 SWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 4699999999999999999999999999999864 69999999999999999999999987 666666554
No 28
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.5e-16 Score=113.77 Aligned_cols=74 Identities=28% Similarity=0.461 Sum_probs=65.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC---CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR---PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKGG 75 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~---~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~~ 75 (223)
++|||+|||.++|+++|+++|++||+|..|.|+.+ ++|||||+|.+.++|++|++.||+.. +..|.|.++.++.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 94 (103)
T 2cq3_A 16 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 94 (103)
T ss_dssp CEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCC
Confidence 68999999999999999999999999999999753 48999999999999999999999987 6666666665543
No 29
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=4.3e-16 Score=113.95 Aligned_cols=72 Identities=26% Similarity=0.602 Sum_probs=62.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||.++++++|+++|++||+|..|.|+. .++|||||+|.+.++|++|++ ||+.. +..|.|..+.++
T Consensus 11 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~ 89 (99)
T 2dgs_A 11 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPR 89 (99)
T ss_dssp CEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCC
Confidence 6899999999999999999999999999999974 368999999999999999998 99887 555555555443
No 30
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.4e-16 Score=115.54 Aligned_cols=73 Identities=34% Similarity=0.471 Sum_probs=63.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||.++|+++|+++|++||+|..|.++. .++|||||+|.+.++|++|++.||+.. +..|.|.++.+.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 95 (105)
T 1x5u_A 16 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAH 95 (105)
T ss_dssp TEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 6899999999999999999999999999999864 357999999999999999999999987 555666655443
No 31
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.67 E-value=3.7e-16 Score=110.31 Aligned_cols=73 Identities=27% Similarity=0.515 Sum_probs=64.7
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC-----CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR-----PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~-----~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||.++++++|+++|++||+|..+.++.+ ++|||||+|.+.++|++|++.||+.. +..|.+..+.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999998743 37899999999999999999999997 677777666543
No 32
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=7e-16 Score=112.92 Aligned_cols=71 Identities=38% Similarity=0.547 Sum_probs=64.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcC--CCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMF--GVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKGG 75 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~--G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~~ 75 (223)
++|||+|||.++|+++|+++|++| |.|..|.+. +|||||+|.+.++|++|++.||+.. +..|.|..+.++.
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 16 KILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVD 90 (99)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 689999999999999999999999 999999876 8899999999999999999999987 7777777776544
No 33
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.8e-16 Score=112.45 Aligned_cols=70 Identities=31% Similarity=0.540 Sum_probs=63.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||.++|+++|+++|++||+|..|.++ ++||||+|.+.++|++|++.||+.. +..|.+..+.+.
T Consensus 10 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 10 WKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 689999999999999999999999999999997 6799999999999999999999987 677777766554
No 34
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.67 E-value=3.9e-16 Score=111.23 Aligned_cols=72 Identities=24% Similarity=0.512 Sum_probs=64.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC------CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR------PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~------~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||.++|+++|+++|++||+|..+.++.+ ++|||||+|.+.++|++|++.||+.. +..|.+..+.+
T Consensus 5 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 84 (88)
T 4a8x_A 5 TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 84 (88)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCC
Confidence 68999999999999999999999999999998642 68999999999999999999999998 66666666643
No 35
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.67 E-value=8.4e-17 Score=116.87 Aligned_cols=74 Identities=27% Similarity=0.405 Sum_probs=64.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCC-CeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCC-C--cEEEEEeecc
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFG-VLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGK-N--GWRVELSHNS 72 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~-~--g~~V~v~~~~ 72 (223)
++|||+|||+++||++|+++|++|| +|.+|.|+. .++|||||+|.+.++|++|++.|++. . |..|.|..+.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5899999999999999999999999 899998863 46899999999999999999988654 3 7788887776
Q ss_pred CCC
Q 041602 73 KGG 75 (223)
Q Consensus 73 ~~~ 75 (223)
++.
T Consensus 82 ~~~ 84 (91)
T 2lxi_A 82 PKP 84 (91)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 36
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.6e-16 Score=118.46 Aligned_cols=71 Identities=20% Similarity=0.236 Sum_probs=62.1
Q ss_pred cEEEEecCCC-CCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC----cEEEEEeeccC
Q 041602 2 SRVYVGNLDP-RVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN----GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~----g~~V~v~~~~~ 73 (223)
++|||+|||+ ++|+++|+++|++||+|..|.|+.+ +|||||+|++.++|++|++.||+.. +..|.|.++..
T Consensus 16 ~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 16 RVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 5899999999 9999999999999999999999754 7999999999999999999988642 66666666653
No 37
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=5e-16 Score=114.90 Aligned_cols=72 Identities=29% Similarity=0.578 Sum_probs=62.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC------CCCEEEEEEcCHHHHHHHHHHh-CCCC--cEEEEEeecc
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR------PPGYAFVEFDDRRDAVDAIRAL-DGKN--GWRVELSHNS 72 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~------~rGfaFV~F~~~e~A~~Al~~l-ng~~--g~~V~v~~~~ 72 (223)
++|||+|||..+|+++|+++|++||+|..|.|+.+ ++|||||+|.+.++|++|++.| |+.. +..|.|.++.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~ 95 (107)
T 2cph_A 16 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWAD 95 (107)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECC
T ss_pred CEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCC
Confidence 58999999999999999999999999999999654 4899999999999999999999 8876 5555555554
Q ss_pred C
Q 041602 73 K 73 (223)
Q Consensus 73 ~ 73 (223)
+
T Consensus 96 ~ 96 (107)
T 2cph_A 96 S 96 (107)
T ss_dssp C
T ss_pred C
Confidence 3
No 38
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.5e-16 Score=114.17 Aligned_cols=69 Identities=28% Similarity=0.481 Sum_probs=61.7
Q ss_pred cEEEEecCCC-CCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC----cEEEEEeeccC
Q 041602 2 SRVYVGNLDP-RVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN----GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~----g~~V~v~~~~~ 73 (223)
++|||+|||+ .+|+++|+++|++||+|..|.+. +|||||+|.+.++|++|++.||+.. .+.|+++....
T Consensus 11 ~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 11 SRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp EEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE---TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 6899999998 99999999999999999999996 8999999999999999999999987 45666665543
No 39
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.66 E-value=3.8e-16 Score=111.21 Aligned_cols=72 Identities=28% Similarity=0.586 Sum_probs=63.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC-----CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR-----PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~-----~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||.++++++|+++|++||+|..|.++.+ ++|||||+|.+.++|++|++.||+.. +..|.+.++.+
T Consensus 7 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 7 FHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCC
Confidence 58999999999999999999999999999999753 47899999999999999999999987 66666666543
No 40
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.4e-16 Score=115.31 Aligned_cols=74 Identities=28% Similarity=0.528 Sum_probs=65.7
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC-----CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR-----PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~-----~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||.++++++|+++|++||+|..|.|+.+ ++|||||+|.+.++|++|++.||+.. +..|.|.++.++
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 95 (103)
T 2cq0_A 16 ATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPS 95 (103)
T ss_dssp EEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCC
Confidence 68999999999999999999999999999999753 47899999999999999999999987 777777776554
Q ss_pred C
Q 041602 75 G 75 (223)
Q Consensus 75 ~ 75 (223)
.
T Consensus 96 ~ 96 (103)
T 2cq0_A 96 T 96 (103)
T ss_dssp C
T ss_pred C
Confidence 3
No 41
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.66 E-value=3.5e-16 Score=110.96 Aligned_cols=70 Identities=29% Similarity=0.513 Sum_probs=62.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC-----CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeec
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR-----PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHN 71 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~-----~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~ 71 (223)
++|||+|||.++++++|+++|++||+|..|.++.+ ++|||||+|.+.++|++|++.||+.. +..|.+.++
T Consensus 8 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 8 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp SEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 68999999999999999999999999999998643 58999999999999999999999997 666666554
No 42
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.66 E-value=1.9e-16 Score=119.74 Aligned_cols=71 Identities=24% Similarity=0.230 Sum_probs=64.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCC-CeEEEEEe-eCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeecc
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFG-VLRSVWVA-RRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNS 72 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~-~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~ 72 (223)
++|||+|||+++|+++|+++|++|| +|..+.+. .+++|||||+|.+.++|++||+.||+.+ +..|.|..+.
T Consensus 29 ~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 29 YRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp EEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 5899999999999999999999999 99999985 5679999999999999999999999987 7777777664
No 43
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.9e-16 Score=115.68 Aligned_cols=72 Identities=26% Similarity=0.487 Sum_probs=63.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee---CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR---RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~---~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||+++|+++|+++|++||+|..|.|+. .++|||||+|.+.++|++|++.||+.. +..|.|..+.+
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2d9p_A 16 VNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 92 (103)
T ss_dssp CCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecc
Confidence 6899999999999999999999999999999975 357899999999999999999999987 55555555543
No 44
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.66 E-value=4.2e-16 Score=115.88 Aligned_cols=71 Identities=25% Similarity=0.294 Sum_probs=62.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC----cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN----GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~----g~~V~v~~~~~ 73 (223)
.+|||+|||.++|+++|+++|++||+|++|.++. .+|||||+|++.++|++|++.|++.. |..|.|..+..
T Consensus 22 ~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 22 PVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 4799999999999999999999999999999874 58999999999999999999998764 66666666543
No 45
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6.7e-16 Score=115.06 Aligned_cols=72 Identities=25% Similarity=0.501 Sum_probs=65.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||..+++++|+++|++||+|..|.|+.+ +|||||+|.+.++|++|++.||+.. +..|.|.++.+.
T Consensus 26 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 26 CTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp CEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 68999999999999999999999999999999865 8999999999999999999999987 777777776554
No 46
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=6.3e-16 Score=115.43 Aligned_cols=70 Identities=23% Similarity=0.251 Sum_probs=59.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC----cEEEEEeecc
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN----GWRVELSHNS 72 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~----g~~V~v~~~~ 72 (223)
++|||+|||+++++++|+++|++||+|..|.|+. .+|||||+|++.++|++|++.|++.. +..|.+.++.
T Consensus 16 ~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 16 PVVHVRGLCESVVEADLVEALEKFGTICYVMMMP-FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp SEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 5899999999999999999999999999998875 48999999999999999999886532 4445555443
No 47
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=5.4e-16 Score=113.62 Aligned_cols=73 Identities=19% Similarity=0.484 Sum_probs=64.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC----CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR----PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~----~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||.++|+++|+++|++||+|..|.++.+ ++|||||+|.+.++|++|++.||+.. +..|.|..+.++
T Consensus 18 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 96 (100)
T 2do4_A 18 HKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSG 96 (100)
T ss_dssp SCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCC
Confidence 58999999999999999999999999999999753 46899999999999999999999886 667777766554
No 48
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=7.2e-16 Score=114.73 Aligned_cols=74 Identities=24% Similarity=0.384 Sum_probs=65.2
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhC------CCC--cEEEEE
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALD------GKN--GWRVEL 68 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~ln------g~~--g~~V~v 68 (223)
++|||+|||+++|+++|+++|++||+|..|.|+. .++|||||+|.+.++|++|++.|| +.. +..|.|
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v 95 (111)
T 1x4h_A 16 KTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKV 95 (111)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEE
Confidence 5899999999999999999999999999999974 468999999999999999999999 665 777777
Q ss_pred eeccCCC
Q 041602 69 SHNSKGG 75 (223)
Q Consensus 69 ~~~~~~~ 75 (223)
.++.++.
T Consensus 96 ~~a~~~~ 102 (111)
T 1x4h_A 96 DLAVTRD 102 (111)
T ss_dssp ECCCCCC
T ss_pred EECCCCc
Confidence 7765543
No 49
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.65 E-value=1.6e-15 Score=113.84 Aligned_cols=74 Identities=28% Similarity=0.591 Sum_probs=65.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC-----CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR-----PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~-----~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||..+|+++|+++|++||+|..|.|+.+ ++|||||+|.+.++|++|++.||+.. +..|.|.++.++
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 95 (115)
T 2dgo_A 16 FHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 95 (115)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 58999999999999999999999999999999754 37899999999999999999999987 777777776554
Q ss_pred C
Q 041602 75 G 75 (223)
Q Consensus 75 ~ 75 (223)
.
T Consensus 96 ~ 96 (115)
T 2dgo_A 96 P 96 (115)
T ss_dssp C
T ss_pred C
Confidence 3
No 50
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=5.2e-16 Score=113.21 Aligned_cols=72 Identities=25% Similarity=0.497 Sum_probs=63.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC----cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN----GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~----g~~V~v~~~~~~ 74 (223)
++|||+|||.++|+++|+++|++||+|..|.+... +|||||+|.+.++|++|++.||+.. +..|.|.++.++
T Consensus 18 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 18 TRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp SCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence 68999999999999999999999999999998755 8999999999999999999999875 355566555443
No 51
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.9e-16 Score=114.77 Aligned_cols=71 Identities=24% Similarity=0.508 Sum_probs=62.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee------CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR------RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~------~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||.++|+++|+++|++|| |..|.|+. .++|||||+|.+.++|++|| .||+.. +..|.|..+.+
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 93 (104)
T 1wi8_A 16 YTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQ 93 (104)
T ss_dssp EEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCC
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccC
Confidence 6899999999999999999999999 99999873 34889999999999999999 899987 66666666654
Q ss_pred C
Q 041602 74 G 74 (223)
Q Consensus 74 ~ 74 (223)
+
T Consensus 94 ~ 94 (104)
T 1wi8_A 94 A 94 (104)
T ss_dssp C
T ss_pred C
Confidence 4
No 52
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.65 E-value=7.2e-16 Score=113.77 Aligned_cols=73 Identities=32% Similarity=0.492 Sum_probs=63.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC----CCCEEEEEEcCHHHHHHHHHHhCCCC--c---EEEEEeecc
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR----PPGYAFVEFDDRRDAVDAIRALDGKN--G---WRVELSHNS 72 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~----~rGfaFV~F~~~e~A~~Al~~lng~~--g---~~V~v~~~~ 72 (223)
++|||+|||.++++++|+++|++||+|..|.|+.+ ++|||||+|.+.++|++|++.||+.. + ..|.|.++.
T Consensus 16 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~ 95 (105)
T 2dnh_A 16 RKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFAD 95 (105)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECc
Confidence 68999999999999999999999999999999753 37899999999999999999999886 4 666666664
Q ss_pred CC
Q 041602 73 KG 74 (223)
Q Consensus 73 ~~ 74 (223)
..
T Consensus 96 ~~ 97 (105)
T 2dnh_A 96 TD 97 (105)
T ss_dssp SS
T ss_pred cC
Confidence 43
No 53
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.65 E-value=5.3e-16 Score=115.80 Aligned_cols=69 Identities=32% Similarity=0.610 Sum_probs=62.4
Q ss_pred cEEEEecCCCC-CCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPR-VSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||.+ +|+++|+++|++||+|..|.+ ++|||||+|.+.++|++|++.||+.. +..|.|..+..
T Consensus 28 ~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 28 SRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp SEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 68999999999 999999999999999999998 48999999999999999999999987 66666666643
No 54
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.5e-16 Score=113.16 Aligned_cols=72 Identities=33% Similarity=0.548 Sum_probs=61.9
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCC-eEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCC-CC--cEEEEEeeccCC
Q 041602 1 MSRVYVGNLDPRVSERDLEDEFRMFGV-LRSVWVARRPPGYAFVEFDDRRDAVDAIRALDG-KN--GWRVELSHNSKG 74 (223)
Q Consensus 1 ~ttLfVgnLp~~~te~~L~~~F~~~G~-I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng-~~--g~~V~v~~~~~~ 74 (223)
.++|||+|||.++|+++|+++|++||+ |..+.+. ++|||||+|.+.++|++|++.||+ .. +..|.+.++.++
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 8 MNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL--KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE--ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc--CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 368999999999999999999999999 6666653 489999999999999999999999 65 777777766544
No 55
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.65 E-value=9e-16 Score=109.71 Aligned_cols=72 Identities=28% Similarity=0.547 Sum_probs=64.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC-----CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR-----PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~-----~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||.++|+++|+++|++||+|..+.++.+ ++|||||+|.+.++|++|+ .||+.. +..|.+..+.+.
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccCC
Confidence 58999999999999999999999999999998753 4899999999999999999 899987 777777776553
No 56
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.8e-16 Score=114.41 Aligned_cols=72 Identities=13% Similarity=0.182 Sum_probs=62.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhC--CCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALD--GKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~ln--g~~--g~~V~v~~~~~~ 74 (223)
++|||+|||+.+|+++|+++|++||+|..|.|+.+ +|||||+|++.++|++|++.|+ +.. +..|.|.++..+
T Consensus 16 ~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 16 RVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp SEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 58999999999999999999999999999988755 8999999999999999999875 333 666666666543
No 57
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.64 E-value=6.9e-16 Score=114.06 Aligned_cols=73 Identities=22% Similarity=0.443 Sum_probs=62.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC-----cEEEEEeec
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN-----GWRVELSHN 71 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~-----g~~V~v~~~ 71 (223)
++|||+|||.++|+++|+++|++||+|..|.|+. .++|||||+|.+.++|++|++.||+.. +..|.|.++
T Consensus 14 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 93 (106)
T 2dgp_A 14 IKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPA 93 (106)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEEC
Confidence 6899999999999999999999999999999864 368999999999999999999999854 355555555
Q ss_pred cCC
Q 041602 72 SKG 74 (223)
Q Consensus 72 ~~~ 74 (223)
...
T Consensus 94 ~~~ 96 (106)
T 2dgp_A 94 DSE 96 (106)
T ss_dssp CCC
T ss_pred Ccc
Confidence 443
No 58
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.64 E-value=1.1e-15 Score=111.32 Aligned_cols=73 Identities=26% Similarity=0.410 Sum_probs=64.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||.++++++|+++|++||+|..|.++. .++|||||+|.+.++|++|++.||+.. +..|.+..+.++
T Consensus 3 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 82 (96)
T 2x1f_A 3 RVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNS 82 (96)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred cEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCC
Confidence 6899999999999999999999999999999974 348999999999999999999999987 777777666543
No 59
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.64 E-value=5.4e-16 Score=111.68 Aligned_cols=73 Identities=21% Similarity=0.353 Sum_probs=63.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee---CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR---RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~---~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||.++++++|+++|++||+|..|.++. .++|||||+|.+.++|++|++.||+.. +..|.+..+.+.
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 9 CQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp CEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 6899999999999999999999999999999875 347999999999999999999999987 555555555443
No 60
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.64 E-value=8.3e-16 Score=111.22 Aligned_cols=69 Identities=28% Similarity=0.512 Sum_probs=59.9
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC----cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN----GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~----g~~V~v~~~~~~ 74 (223)
++|||+|||+++||++|+++|++||+|.+|.|+.+++|||||+|++.++|++ +++.. ++.|.+..+.++
T Consensus 12 ~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 12 SKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC--
T ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCC
Confidence 6899999999999999999999999999999998899999999999999984 45443 678888877553
No 61
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.6e-16 Score=111.74 Aligned_cols=71 Identities=32% Similarity=0.479 Sum_probs=63.9
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeecc
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNS 72 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~ 72 (223)
++|||+|||.++++++|+++|++||+|..|.++. .++|||||+|.+.++|++|++.||+.. +..|.+..+.
T Consensus 16 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 16 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp GCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 5799999999999999999999999999999974 347899999999999999999999987 7777777664
No 62
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.64 E-value=1.1e-15 Score=112.08 Aligned_cols=70 Identities=29% Similarity=0.489 Sum_probs=63.3
Q ss_pred cEEEEecCCC-CCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDP-RVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||. ++++++|+++|++||+|..|.+. +|||||+|.+.++|++|++.||+.. +..|.+..+..+
T Consensus 23 ~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 23 SRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp CEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC---SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 6899999998 99999999999999999999985 8999999999999999999999987 777777666443
No 63
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.8e-15 Score=113.84 Aligned_cols=73 Identities=25% Similarity=0.431 Sum_probs=63.9
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC-cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN-GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~-g~~V~v~~~~~~ 74 (223)
++|||+|||.++|+++|+++|++||+|..|.|+. .++|||||+|.+.++|++|++.|++.. +..|.|..+...
T Consensus 18 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 18 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLG 96 (116)
T ss_dssp SEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEESTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEcccC
Confidence 6899999999999999999999999999999974 357999999999999999999999843 666666666543
No 64
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=6.9e-16 Score=112.97 Aligned_cols=72 Identities=26% Similarity=0.528 Sum_probs=63.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||..+|+++|+++|++||+|..|.++. .+|||||+|.+.++|++|++.||+.. +..|.+..+.++
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~-~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 16 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK-DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp TEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET-TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec-CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 5899999999999999999999999999999874 48999999999999999999999987 555555555443
No 65
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.64 E-value=7.7e-16 Score=115.67 Aligned_cols=74 Identities=22% Similarity=0.343 Sum_probs=65.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC-----CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR-----PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~-----~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||.++++++|+++|++||+|..|.|+.+ ++|||||+|.+.++|++|++.||+.. +..|.|.++.++
T Consensus 26 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 105 (115)
T 2cpz_A 26 ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSK 105 (115)
T ss_dssp CCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCS
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCC
Confidence 58999999999999999999999999999998753 36899999999999999999999987 777777776554
Q ss_pred C
Q 041602 75 G 75 (223)
Q Consensus 75 ~ 75 (223)
.
T Consensus 106 ~ 106 (115)
T 2cpz_A 106 N 106 (115)
T ss_dssp C
T ss_pred C
Confidence 3
No 66
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=5.1e-16 Score=113.95 Aligned_cols=71 Identities=24% Similarity=0.380 Sum_probs=64.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||.++++++|+++|++||+|..|.+. .++|||||+|.+.++|++|++.||+.. +..|.+.++.+
T Consensus 28 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 28 TTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 689999999999999999999999999999987 568999999999999999999999987 77777776643
No 67
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.3e-16 Score=114.67 Aligned_cols=70 Identities=21% Similarity=0.511 Sum_probs=60.9
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeec
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHN 71 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~ 71 (223)
++|||+|||.++++++|+++|++||+|..|.++. .++|||||+|.+.++|++|++.||+.. +..|.|.++
T Consensus 24 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 24 WILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp EEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 5799999999999999999999999999999974 347999999999999999999999987 544444444
No 68
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=5.7e-16 Score=116.14 Aligned_cols=74 Identities=23% Similarity=0.392 Sum_probs=65.7
Q ss_pred cEEEEecCCCCCCHHHHH---HHHHcCCCeEEEEEeeC--------CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEE
Q 041602 2 SRVYVGNLDPRVSERDLE---DEFRMFGVLRSVWVARR--------PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVEL 68 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~---~~F~~~G~I~~v~i~~~--------~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v 68 (223)
++|||+|||+++++++|+ ++|++||+|..|.|+.+ ++|||||+|.+.++|++|++.||+.. +..|.|
T Consensus 16 ~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V 95 (111)
T 2cpi_A 16 NLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKA 95 (111)
T ss_dssp SCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEE
Confidence 589999999999999999 99999999999999742 34899999999999999999999997 777888
Q ss_pred eeccCCC
Q 041602 69 SHNSKGG 75 (223)
Q Consensus 69 ~~~~~~~ 75 (223)
.++.++.
T Consensus 96 ~~a~~k~ 102 (111)
T 2cpi_A 96 SLGTTKY 102 (111)
T ss_dssp ESCCCCS
T ss_pred Eeccccc
Confidence 7776543
No 69
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.64 E-value=1.1e-15 Score=110.64 Aligned_cols=71 Identities=34% Similarity=0.501 Sum_probs=63.7
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC----CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeecc
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR----PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNS 72 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~----~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~ 72 (223)
++|||+|||..+++++|+++|++||+|..|.|+.+ ++|||||+|.+.++|++|++.||+.. +..|.|..+.
T Consensus 17 ~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 17 RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp GEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 58999999999999999999999999999999753 37899999999999999999999987 7777776653
No 70
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.4e-15 Score=112.51 Aligned_cols=72 Identities=28% Similarity=0.441 Sum_probs=64.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC----CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR----PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~----~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||.++++++|+++|++||+|..|.|+.+ ++|||||+|.+.++|++|++.||+.. +..|.|..+..
T Consensus 16 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 16 STVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp SCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 58999999999999999999999999999999753 46899999999999999999999987 66677766644
No 71
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.63 E-value=1.2e-15 Score=118.57 Aligned_cols=74 Identities=23% Similarity=0.321 Sum_probs=65.4
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCE-EEEEEcCHHHHHHHHHHhCCCC--c--EEEEEeeccCC
Q 041602 1 MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGY-AFVEFDDRRDAVDAIRALDGKN--G--WRVELSHNSKG 74 (223)
Q Consensus 1 ~ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGf-aFV~F~~~e~A~~Al~~lng~~--g--~~V~v~~~~~~ 74 (223)
|..|||+||++.+|+++|+++|++||+|.+|.+..+.+|| |||+|.+.++|++|++.|||.. + ..+.+..++..
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 3579999999999999999999999999999998777898 9999999999999999999998 4 56666666443
No 72
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3.5e-16 Score=114.30 Aligned_cols=74 Identities=31% Similarity=0.581 Sum_probs=63.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeE-EEEEeeC-----CCCEEEEEEcCHHHHHHHHHHhCCCC--cEE----EEEe
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLR-SVWVARR-----PPGYAFVEFDDRRDAVDAIRALDGKN--GWR----VELS 69 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~-~v~i~~~-----~rGfaFV~F~~~e~A~~Al~~lng~~--g~~----V~v~ 69 (223)
++|||+|||.++++++|+++|++||+|. .|.|+.+ ++|||||+|.+.++|++|++.||+.. +.. |.+.
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~ 89 (99)
T 2div_A 10 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLN 89 (99)
T ss_dssp SEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEe
Confidence 6899999999999999999999999999 9998753 46899999999999999999999886 444 6666
Q ss_pred eccCCC
Q 041602 70 HNSKGG 75 (223)
Q Consensus 70 ~~~~~~ 75 (223)
++.+..
T Consensus 90 ~a~~~~ 95 (99)
T 2div_A 90 YATYSG 95 (99)
T ss_dssp ETTCCS
T ss_pred ecCCCC
Confidence 665443
No 73
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.63 E-value=1.2e-15 Score=113.55 Aligned_cols=72 Identities=21% Similarity=0.465 Sum_probs=63.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||..+|+++|+++|++||+|..|.++. .++|||||+|.+.++|++|++.||+.. +..|.|.++.+
T Consensus 27 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 105 (110)
T 1oo0_B 27 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 105 (110)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEccc
Confidence 5799999999999999999999999999999964 347999999999999999999999987 66666666544
No 74
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.63 E-value=2.1e-16 Score=116.49 Aligned_cols=71 Identities=23% Similarity=0.274 Sum_probs=63.0
Q ss_pred cEEEEecCCC------CCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--c-EEEE
Q 041602 2 SRVYVGNLDP------RVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--G-WRVE 67 (223)
Q Consensus 2 ttLfVgnLp~------~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g-~~V~ 67 (223)
++|||+|||. ++++++|+++|++||+|..|.|+. .++|||||+|.+.++|++|++.||+.. + ..|.
T Consensus 7 ~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~ 86 (100)
T 3ns6_A 7 QYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLF 86 (100)
T ss_dssp GEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCE
T ss_pred cEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEE
Confidence 5899999999 999999999999999999999974 458999999999999999999999987 6 6666
Q ss_pred Eeecc
Q 041602 68 LSHNS 72 (223)
Q Consensus 68 v~~~~ 72 (223)
+..+.
T Consensus 87 V~~a~ 91 (100)
T 3ns6_A 87 LYTMK 91 (100)
T ss_dssp EEESH
T ss_pred EEECc
Confidence 65553
No 75
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.63 E-value=1.9e-16 Score=114.31 Aligned_cols=73 Identities=18% Similarity=0.309 Sum_probs=60.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCC--CeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeecc
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFG--VLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNS 72 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G--~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~ 72 (223)
.+|||+|||.++|+++|+++|++|| +|..+.++. .++|||||+|.+.++|++|++.||+.. |..|.|..+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 999999875 347899999999999999999999987 6666666665
Q ss_pred CC
Q 041602 73 KG 74 (223)
Q Consensus 73 ~~ 74 (223)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 76
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.2e-15 Score=114.08 Aligned_cols=74 Identities=32% Similarity=0.516 Sum_probs=65.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeE--------EEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEE
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLR--------SVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRV 66 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~--------~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V 66 (223)
++|||+|||.++|+++|+++|++||+|. .|.|+. .++|||||+|.+.++|++|++.||+.. +..|
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 95 (113)
T 2cpe_A 16 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKL 95 (113)
T ss_dssp CEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEE
Confidence 6899999999999999999999999998 588764 348999999999999999999999987 7777
Q ss_pred EEeeccCCC
Q 041602 67 ELSHNSKGG 75 (223)
Q Consensus 67 ~v~~~~~~~ 75 (223)
.|..+.++.
T Consensus 96 ~V~~a~~~~ 104 (113)
T 2cpe_A 96 KVSLARKKP 104 (113)
T ss_dssp EEECSSCCC
T ss_pred EEEECCCCC
Confidence 777765543
No 77
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.63 E-value=7.5e-16 Score=121.04 Aligned_cols=72 Identities=54% Similarity=0.980 Sum_probs=64.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||+++|+++|+++|++||+|..|.++.+++|||||+|.+.++|++|++.||+.. +..|.|.++.+
T Consensus 74 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 74 CKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp CEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 6899999999999999999999999999999988889999999999999999999999987 55555555543
No 78
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=110.30 Aligned_cols=70 Identities=31% Similarity=0.484 Sum_probs=62.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeec
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHN 71 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~ 71 (223)
++|||+|||.++++++|+++|++||+|..|.++. .++|||||+|.+.++|++|++.||+.. +..|.+.++
T Consensus 17 ~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 17 STVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp TSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 5899999999999999999999999999999964 357999999999999999999999987 666666654
No 79
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.1e-16 Score=118.45 Aligned_cols=71 Identities=14% Similarity=0.195 Sum_probs=61.2
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCC--C--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGK--N--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~--~--g~~V~v~~~~~ 73 (223)
++|||+|||+++||++|+++|++||+|+.|.|+.+ +|||||+|++.++|++|++.|++. . +..|.|..+..
T Consensus 32 ~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 106 (119)
T 2ad9_A 32 RVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 106 (119)
T ss_dssp SEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccC
Confidence 58999999999999999999999999999999865 899999999999999999988742 2 55555555543
No 80
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=111.58 Aligned_cols=71 Identities=25% Similarity=0.405 Sum_probs=60.7
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEE-eeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWV-ARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i-~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||.++|+++|+++|++||+|. +.+ ...++|||||+|.+.++|++|++.||+.. +..|.|..+.+
T Consensus 20 ~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 20 ADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 6899999999999999999999999997 444 35779999999999999999999999987 55555555543
No 81
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.4e-16 Score=112.21 Aligned_cols=74 Identities=24% Similarity=0.337 Sum_probs=61.2
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCCcEEEEEeeccCCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKNGWRVELSHNSKGG 75 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~g~~V~v~~~~~~~ 75 (223)
++|||+|||.++|+++|+++|++||+|..|.|+.+++|||||+|.+.++|++|+.......++.|.+.++.++.
T Consensus 6 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPKH 79 (88)
T ss_dssp CEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCCCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCCCC
Confidence 68999999999999999999999999999999888899999999999999765321000017788888876543
No 82
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.62 E-value=1.3e-15 Score=113.97 Aligned_cols=70 Identities=30% Similarity=0.532 Sum_probs=64.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||.++|+++|+++|++||+|..|.++ +|||||+|.+.++|++|++.||+.. +..|.|..+.+.
T Consensus 32 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 32 TRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp SEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 689999999999999999999999999999998 8999999999999999999999987 777777776554
No 83
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=114.95 Aligned_cols=70 Identities=23% Similarity=0.256 Sum_probs=61.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeecc
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNS 72 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~ 72 (223)
++|||+|||.++|+++|+++|++||+|..|.|+. .+|||||+|.+.++|++|++.||+.. +..|.|.++.
T Consensus 11 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 11 TVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 5899999999999999999999999999998874 58999999999999999999999987 4444444443
No 84
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=108.31 Aligned_cols=69 Identities=29% Similarity=0.509 Sum_probs=61.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHh-CCCC--cEEEEEeec
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRAL-DGKN--GWRVELSHN 71 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~l-ng~~--g~~V~v~~~ 71 (223)
++|||+|||.++++++|+++|++||+|..|.++. ++|||||+|.+.++|++|++.| ++.. +..|.+.++
T Consensus 13 ~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 13 TTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp CCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred cEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 6899999999999999999999999999999985 4899999999999999999998 7765 666666554
No 85
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=2.4e-15 Score=110.80 Aligned_cols=71 Identities=27% Similarity=0.459 Sum_probs=62.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC-----CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR-----PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~-----~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||.++|+++|+++|++|| |..|.|+.+ ++|||||+|.+.++|++|+ .||+.. +..|.|..+.+.
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2dng_A 16 YTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGR 93 (103)
T ss_dssp EEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCC
Confidence 5899999999999999999999996 999999753 4789999999999999999 899987 666666666544
No 86
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.1e-15 Score=113.43 Aligned_cols=73 Identities=25% Similarity=0.439 Sum_probs=64.2
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||.++|+++|+++|++||+|..|.|+. .++|||||+|.+.++|++||+. ++.. +..|.|.++.++
T Consensus 28 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~ 106 (116)
T 1x4b_A 28 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAR 106 (116)
T ss_dssp TEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCC
Confidence 6899999999999999999999999999999974 3579999999999999999986 7665 777888777655
Q ss_pred C
Q 041602 75 G 75 (223)
Q Consensus 75 ~ 75 (223)
.
T Consensus 107 ~ 107 (116)
T 1x4b_A 107 E 107 (116)
T ss_dssp C
T ss_pred c
Confidence 4
No 87
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.62 E-value=2.2e-15 Score=114.46 Aligned_cols=72 Identities=31% Similarity=0.571 Sum_probs=63.7
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||.++|+++|+++|++||+|..|.++. .++|||||+|.+.++|++|+ .||+.. +..|.|.++...
T Consensus 37 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 37 RSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp TEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCCC
Confidence 5899999999999999999999999999999864 35889999999999999999 799987 777777776543
No 88
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.8e-15 Score=111.47 Aligned_cols=72 Identities=28% Similarity=0.378 Sum_probs=62.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHHc-CCCeEEEEEeeC----CCCEEEEEEcCHHHHHHHHHHhCCCC---cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRM-FGVLRSVWVARR----PPGYAFVEFDDRRDAVDAIRALDGKN---GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~-~G~I~~v~i~~~----~rGfaFV~F~~~e~A~~Al~~lng~~---g~~V~v~~~~~ 73 (223)
++|||+|||.++|+++|+++|++ ||+|..|.|+.+ ++|||||+|.+.++|++|++.||+.. +..|.+..+.+
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~ 89 (104)
T 2dhg_A 10 YSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIP 89 (104)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccC
Confidence 68999999999999999999999 999999999753 57899999999999999999999854 55555555543
No 89
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.61 E-value=2.2e-15 Score=111.51 Aligned_cols=70 Identities=31% Similarity=0.498 Sum_probs=62.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeec
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHN 71 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~ 71 (223)
++|||+|||..+|+++|+++|++||+|..|.|+. .++|||||+|.+.++|++|++.||+.. +..|.|..+
T Consensus 30 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 30 GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 5899999999999999999999999999999874 347899999999999999999999987 666666554
No 90
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.4e-15 Score=113.78 Aligned_cols=72 Identities=29% Similarity=0.488 Sum_probs=64.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee---CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR---RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~---~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||.++|+++|+++|++||+|..|.++. .++|||||+|.+.++|++|++.||+.. +..|.|..+.+
T Consensus 30 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 30 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp CEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 6899999999999999999999999999999974 358999999999999999999999987 77777766644
No 91
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.1e-15 Score=113.13 Aligned_cols=71 Identities=34% Similarity=0.522 Sum_probs=63.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEe-----eCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVA-----RRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~-----~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||.++++++|+++|++||+|..|.|+ +.++|||||+|.+.++|++|+ .||+.. +..|.|..+.+
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 26 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 589999999999999999999999999999997 356899999999999999999 999987 66666666543
No 92
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.2e-15 Score=113.56 Aligned_cols=68 Identities=18% Similarity=0.267 Sum_probs=59.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee----CCCCEEEEEEcCHHHHHHHHHHhCCCC--c--EEEEEee
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR----RPPGYAFVEFDDRRDAVDAIRALDGKN--G--WRVELSH 70 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~----~~rGfaFV~F~~~e~A~~Al~~lng~~--g--~~V~v~~ 70 (223)
.+|||+|||+++|+++|+++|++||+|..|.|+. .++|||||+|.+.++|++|++ +++.. + +.|+++.
T Consensus 12 ~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 12 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 5899999999999999999999999999999974 468999999999999999998 88776 4 4555443
No 93
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=7.8e-15 Score=107.02 Aligned_cols=71 Identities=21% Similarity=0.349 Sum_probs=63.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKGG 75 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~~ 75 (223)
++|||+|| ++|+++|+++|++||+|..|.|. .++|||||+|.+.++|++|++.||+.. +..|.|.++.++.
T Consensus 16 ~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 16 NTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp SEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred CEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 68999996 89999999999999999999985 668999999999999999999999987 7777777775543
No 94
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.61 E-value=6.9e-16 Score=109.04 Aligned_cols=61 Identities=26% Similarity=0.456 Sum_probs=56.5
Q ss_pred cEEEEecCCCCC------CHHHHHHHHHcCCCeEEEEEee---CCCCEEEEEEcCHHHHHHHHHHhCCCC
Q 041602 2 SRVYVGNLDPRV------SERDLEDEFRMFGVLRSVWVAR---RPPGYAFVEFDDRRDAVDAIRALDGKN 62 (223)
Q Consensus 2 ttLfVgnLp~~~------te~~L~~~F~~~G~I~~v~i~~---~~rGfaFV~F~~~e~A~~Al~~lng~~ 62 (223)
++|||+|||..+ ++++|+++|++||+|..|.++. .++|||||+|.+.++|++|++.|||..
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~ 71 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYK 71 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcc
Confidence 589999999999 7899999999999999999874 468999999999999999999999886
No 95
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.8e-15 Score=109.92 Aligned_cols=74 Identities=23% Similarity=0.410 Sum_probs=61.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEE-eeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWV-ARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKGG 75 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i-~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~~ 75 (223)
++|||+|||.++|+++|+++|++||+|.-+.. .+.++|||||+|.+.++|++|++.||+.. +..|.|..+.++.
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (101)
T 2fc9_A 16 KTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 92 (101)
T ss_dssp SEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCC
Confidence 68999999999999999999999998832211 12468999999999999999999999987 7777777765543
No 96
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.60 E-value=8.6e-16 Score=111.58 Aligned_cols=74 Identities=24% Similarity=0.367 Sum_probs=63.9
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKGG 75 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~~ 75 (223)
++|||+|||..+|+++|+++|++||+|..+...+.++|||||+|.+.++|++|++.||+.. +..|.+..+.++.
T Consensus 17 ~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 17 RTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp GEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 5899999999999999999999999988773334568999999999999999999999887 7777777775543
No 97
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=8.4e-16 Score=116.51 Aligned_cols=71 Identities=21% Similarity=0.273 Sum_probs=60.3
Q ss_pred cEEEEecCCCC-CCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCC--C--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPR-VSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGK--N--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~--~--g~~V~v~~~~~ 73 (223)
++|||+|||++ +|+++|+++|++||+|..|.|+ ..+|||||+|++.++|++|++.|++. . +..|.|..+..
T Consensus 26 ~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 26 RVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM-RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp CEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 58999999998 9999999999999999999987 45899999999999999999988642 2 55555555543
No 98
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=4.6e-15 Score=114.36 Aligned_cols=72 Identities=19% Similarity=0.195 Sum_probs=63.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCE-EEEEEcCHHHHHHHHHHhCCCC--c--EEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGY-AFVEFDDRRDAVDAIRALDGKN--G--WRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGf-aFV~F~~~e~A~~Al~~lng~~--g--~~V~v~~~~~~ 74 (223)
..|||+||++.+|+++|+++|++||+|++|.|..+ .|| |||+|++.++|++|+++|||.+ + ..|.|..+++.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 46899999999999999999999999999998765 596 9999999999999999999997 3 46666666543
No 99
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=5.2e-16 Score=110.32 Aligned_cols=61 Identities=30% Similarity=0.505 Sum_probs=56.9
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN 62 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~ 62 (223)
++|||+|||.++++++|+++|++||+|..|.++. .++|||||+|.+.++|++|++.||+..
T Consensus 6 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 71 (85)
T 1x4e_A 6 SGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASG 71 (85)
T ss_dssp CEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCe
Confidence 6899999999999999999999999999999864 348999999999999999999999876
No 100
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.60 E-value=3.1e-16 Score=112.68 Aligned_cols=72 Identities=28% Similarity=0.561 Sum_probs=61.7
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 1 MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 1 ~ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
|++|||+|||.++++++|+++|++||+|..|.++. .++|||||+|.+.+ |++|++.||+.. +..|.+..+.+
T Consensus 1 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 1 MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp CEEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred CcEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 68999999999999999999999999999999973 45899999999999 999999999987 55455544433
No 101
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.7e-15 Score=111.45 Aligned_cols=72 Identities=31% Similarity=0.609 Sum_probs=62.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC-----CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR-----PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~-----~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||..+++++|+++|++||+|..|.++.+ ++|||||+|.+.++|++|++.||+.. +..|.+.++.+
T Consensus 9 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 9 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp SCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred cEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 58999999999999999999999999999998753 37999999999999999999999987 55555555543
No 102
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.60 E-value=2.5e-15 Score=109.96 Aligned_cols=69 Identities=29% Similarity=0.474 Sum_probs=60.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEE--------EEEeeC-----CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEE
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRS--------VWVARR-----PPGYAFVEFDDRRDAVDAIRALDGKN--GWRV 66 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~--------v~i~~~-----~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V 66 (223)
++|||+|||.++++++|+++|++||.|.. |.++.+ ++|||||+|.+.++|++|++.||+.. +..|
T Consensus 14 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 93 (99)
T 2la6_A 14 NTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPI 93 (99)
T ss_dssp SEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 68999999999999999999999999999 888643 47899999999999999999999987 5444
Q ss_pred EEee
Q 041602 67 ELSH 70 (223)
Q Consensus 67 ~v~~ 70 (223)
.+..
T Consensus 94 ~V~~ 97 (99)
T 2la6_A 94 KVSF 97 (99)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4444
No 103
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=9e-16 Score=111.88 Aligned_cols=71 Identities=27% Similarity=0.364 Sum_probs=61.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeecc
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNS 72 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~ 72 (223)
++|||+|||.++++++|+++|++||+|..+.++. .++|||||+|.+.++|++|++.||+.. +..|.|..+.
T Consensus 16 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 16 TIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp EEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 5899999999999999999999999998765543 357999999999999999999999987 6666666654
No 104
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.59 E-value=2.4e-15 Score=116.17 Aligned_cols=72 Identities=29% Similarity=0.461 Sum_probs=64.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||.++|+++|+++|++||+|..|.|+. .++|||||+|.+.++|++|++.||+.. +..|.|.++.+
T Consensus 47 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~ 125 (129)
T 2kxn_B 47 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSIT 125 (129)
T ss_dssp SCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 5799999999999999999999999999999974 468999999999999999999999987 66666666544
No 105
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.5e-15 Score=112.60 Aligned_cols=72 Identities=35% Similarity=0.361 Sum_probs=60.2
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKGG 75 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~~ 75 (223)
++|||+|||+++|+++|+++|++||.+ .|.|+. +++|||||+|.+.++|++||+ +|+.. +..|+|..+....
T Consensus 16 ~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~~~~ 93 (102)
T 1wez_A 16 HCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNSTAG 93 (102)
T ss_dssp CEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCCCC
Confidence 589999999999999999999999955 888864 357899999999999999995 78776 6666666665443
No 106
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.59 E-value=3.3e-15 Score=108.51 Aligned_cols=73 Identities=25% Similarity=0.495 Sum_probs=64.7
Q ss_pred cEEEEecCCCCCCHHHHH----HHHHcCCCeEEEEEee--CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLE----DEFRMFGVLRSVWVAR--RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~----~~F~~~G~I~~v~i~~--~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||.++++++|+ ++|++||+|..|.++. .++|||||+|.+.++|++|++.||+.. +..|.+.++.+
T Consensus 9 ~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (97)
T 1nu4_A 9 HTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKT 88 (97)
T ss_dssp SEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccC
Confidence 689999999999999999 9999999999999863 458999999999999999999999987 77777766654
Q ss_pred C
Q 041602 74 G 74 (223)
Q Consensus 74 ~ 74 (223)
.
T Consensus 89 ~ 89 (97)
T 1nu4_A 89 D 89 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 107
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.59 E-value=2.6e-15 Score=111.40 Aligned_cols=72 Identities=22% Similarity=0.369 Sum_probs=64.4
Q ss_pred cEEEEecCCCCC------CHHHHHHHHHcCCCeEEEEEee---CCCCEEEEEEcCHHHHHHHHHHhCCCC--cE-EEEEe
Q 041602 2 SRVYVGNLDPRV------SERDLEDEFRMFGVLRSVWVAR---RPPGYAFVEFDDRRDAVDAIRALDGKN--GW-RVELS 69 (223)
Q Consensus 2 ttLfVgnLp~~~------te~~L~~~F~~~G~I~~v~i~~---~~rGfaFV~F~~~e~A~~Al~~lng~~--g~-~V~v~ 69 (223)
++|||+|||..+ |+++|+++|++||+|..|.|+. .++|||||+|.+.++|++|++.|||.. +. .|.+.
T Consensus 16 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~ 95 (105)
T 2nlw_A 16 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVN 95 (105)
T ss_dssp SEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEE
T ss_pred CEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEE
Confidence 589999999999 7899999999999999999873 468999999999999999999999987 66 77777
Q ss_pred eccC
Q 041602 70 HNSK 73 (223)
Q Consensus 70 ~~~~ 73 (223)
.+..
T Consensus 96 ~a~~ 99 (105)
T 2nlw_A 96 LFTD 99 (105)
T ss_dssp CSCC
T ss_pred Ecch
Confidence 7654
No 108
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.59 E-value=2.9e-15 Score=112.00 Aligned_cols=72 Identities=31% Similarity=0.553 Sum_probs=63.2
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC-----CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR-----PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~-----~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||..+++++|+++|++||+|..|.++.+ ++|||||+|.+.++|++|++.||+.. +..|.|..+.+
T Consensus 27 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 105 (108)
T 2jrs_A 27 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTE 105 (108)
T ss_dssp EEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEccc
Confidence 58999999999999999999999999999999743 47899999999999999999999987 66666665543
No 109
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.59 E-value=2.5e-15 Score=113.18 Aligned_cols=70 Identities=26% Similarity=0.394 Sum_probs=62.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeec
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHN 71 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~ 71 (223)
++|||+|||.++++++|+++|++||+|..|.|+. .++|||||+|.+.++|++|++.||+.. +..|.|.++
T Consensus 41 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 41 CNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp EEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 6899999999999999999999999999999964 458999999999999999999999987 666655543
No 110
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=3.6e-15 Score=115.21 Aligned_cols=71 Identities=20% Similarity=0.321 Sum_probs=61.3
Q ss_pred cEEEEecCCCCCCHHHHH----HHHHcCCCeEEEEEee--CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeecc
Q 041602 2 SRVYVGNLDPRVSERDLE----DEFRMFGVLRSVWVAR--RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNS 72 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~----~~F~~~G~I~~v~i~~--~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~ 72 (223)
++|||+|||+.+++++|+ ++|++||+|.+|.+.. .++|||||+|.+.++|++|++.|||.. +..|.|.++.
T Consensus 30 ~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~ 108 (127)
T 2a3j_A 30 QVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSE 108 (127)
T ss_dssp SEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEcc
Confidence 589999999999999876 6999999999998863 578999999999999999999999987 5555555543
No 111
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.59 E-value=1e-15 Score=110.86 Aligned_cols=71 Identities=28% Similarity=0.377 Sum_probs=62.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeecc
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNS 72 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~ 72 (223)
++|||+|||.++|+++|+++|++||+|..+.++. .++|||||+|.+.++|++|++.||+.. +..|.|..+.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 16 TVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp EEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 5899999999999999999999999998776653 357999999999999999999999987 7777766553
No 112
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4.6e-15 Score=109.54 Aligned_cols=73 Identities=19% Similarity=0.419 Sum_probs=64.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC-----CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR-----PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~-----~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||.++++++|+++|++||+|..|.|+.+ ++|||||+|.+.++|++|++. ++.. +..|.|..+.++
T Consensus 17 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~ 95 (105)
T 2dh8_A 17 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPR 95 (105)
T ss_dssp SEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccCC
Confidence 68999999999999999999999999999999753 368999999999999999998 8776 777887777654
Q ss_pred C
Q 041602 75 G 75 (223)
Q Consensus 75 ~ 75 (223)
.
T Consensus 96 ~ 96 (105)
T 2dh8_A 96 G 96 (105)
T ss_dssp S
T ss_pred C
Confidence 3
No 113
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.1e-15 Score=112.06 Aligned_cols=72 Identities=29% Similarity=0.443 Sum_probs=60.7
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCe----EEEEEe-eCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVL----RSVWVA-RRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I----~~v~i~-~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||.++|+++|+++|++||.| ..+.+. +.++|||||+|.+.++|++|++.||+.. +..|.|.++.+
T Consensus 26 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 104 (115)
T 2cpx_A 26 KVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKN 104 (115)
T ss_dssp SEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccC
Confidence 689999999999999999999999998 455544 4678999999999999999999999987 55555555544
No 114
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.59 E-value=3.5e-15 Score=118.95 Aligned_cols=71 Identities=24% Similarity=0.358 Sum_probs=63.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCC--CeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeecc
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFG--VLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNS 72 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G--~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~ 72 (223)
++|||+|||+++|+++|+++|++|| +|..|.|+. .++|||||+|.+.++|++||+.||+.. +..|.|..+.
T Consensus 56 ~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~ 135 (156)
T 3n9u_C 56 AAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPAT 135 (156)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcC
Confidence 5899999999999999999999999 999999974 357899999999999999999999987 7777776664
No 115
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.59 E-value=6.2e-15 Score=112.21 Aligned_cols=73 Identities=32% Similarity=0.494 Sum_probs=64.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||..+++++|+++|++||+|..|.|+. .++|||||+|.+.++|++|++.||+.. +..|.|..+...
T Consensus 36 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 114 (124)
T 2kt5_A 36 AKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 114 (124)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence 5899999999999999999999999999999975 368999999999999999999999987 666666665443
No 116
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.58 E-value=1.6e-15 Score=105.32 Aligned_cols=67 Identities=21% Similarity=0.388 Sum_probs=58.6
Q ss_pred EEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEee
Q 041602 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSH 70 (223)
Q Consensus 3 tLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~ 70 (223)
+|||+|||+++++++|+++|++||+|..|.++. .++|||||+|.+.++|++|++ ||+.. +..|.+.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEe
Confidence 589999999999999999999999999998864 347999999999999999998 88876 55555543
No 117
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.58 E-value=3.9e-15 Score=119.88 Aligned_cols=74 Identities=23% Similarity=0.264 Sum_probs=64.0
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-CCCCEEEEEEcCHHHHHHHHHHhCCCC--c--EEEEEeeccCC
Q 041602 1 MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-RPPGYAFVEFDDRRDAVDAIRALDGKN--G--WRVELSHNSKG 74 (223)
Q Consensus 1 ~ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-~~rGfaFV~F~~~e~A~~Al~~lng~~--g--~~V~v~~~~~~ 74 (223)
+.+|||+||++.+|+++|+++|++||+|++|.|.. .++|||||+|++.++|++|++.|||.. + ..|.|.+++++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 35799999999999999999999999999999864 457899999999999999999999987 3 56666665443
No 118
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.58 E-value=2.3e-15 Score=108.06 Aligned_cols=70 Identities=21% Similarity=0.294 Sum_probs=63.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||+++++++|+++|++| +|..+.+. .++|||||+|.+.++|++|++.||+.. +..|.+.++..
T Consensus 6 ~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 6 SGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 589999999999999999999999 99999886 679999999999999999999999987 77777777644
No 119
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4e-15 Score=110.43 Aligned_cols=72 Identities=24% Similarity=0.426 Sum_probs=61.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCC-eEEEEEee------CCCCEEEEEEcCHHHHHHHHHHhC-C-CC--cEEEEEee
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGV-LRSVWVAR------RPPGYAFVEFDDRRDAVDAIRALD-G-KN--GWRVELSH 70 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~-I~~v~i~~------~~rGfaFV~F~~~e~A~~Al~~ln-g-~~--g~~V~v~~ 70 (223)
++|||+|||.++|+++|+++|++||+ |..|.++. .++|||||+|.+.++|++|++.|+ + .. +..|.+.+
T Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~ 88 (109)
T 2dis_A 9 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDW 88 (109)
T ss_dssp EEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEE
Confidence 58999999999999999999999998 99999872 568999999999999999999995 3 44 55555555
Q ss_pred ccC
Q 041602 71 NSK 73 (223)
Q Consensus 71 ~~~ 73 (223)
+.+
T Consensus 89 a~~ 91 (109)
T 2dis_A 89 AEP 91 (109)
T ss_dssp SCS
T ss_pred cCC
Confidence 544
No 120
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.58 E-value=4.7e-15 Score=105.74 Aligned_cols=68 Identities=22% Similarity=0.449 Sum_probs=59.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC-----CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEee
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR-----PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSH 70 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~-----~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~ 70 (223)
++|||+|||+++++++|+++|++||+|..|.++.+ ++|||||+|.+.++|++|++. ++.. +..|.+.+
T Consensus 12 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 12 GKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPKK 86 (87)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEEe
Confidence 68999999999999999999999999999999743 478999999999999999964 5554 66666654
No 121
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=7.1e-15 Score=108.13 Aligned_cols=73 Identities=23% Similarity=0.347 Sum_probs=60.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC-----CCCEEEEEEcCHHHHHHHHHHhCCCCcEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR-----PPGYAFVEFDDRRDAVDAIRALDGKNGWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~-----~rGfaFV~F~~~e~A~~Al~~lng~~g~~V~v~~~~~~ 74 (223)
++|||+|||.++++++|+++|++||+|..|.|+.+ ++|||||+|.+.++|++|++.++...+..|.+..+.++
T Consensus 16 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~~~ 93 (103)
T 2cqg_A 16 SDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSK 93 (103)
T ss_dssp CCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCCTT
T ss_pred CEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecCCC
Confidence 58999999999999999999999999999999753 46899999999999999998422112667777776554
No 122
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.2e-15 Score=106.12 Aligned_cols=68 Identities=21% Similarity=0.444 Sum_probs=58.9
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEee
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSH 70 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~ 70 (223)
++|||+|||.++++++|+++|++||+|..+.++. .++|||||+|.+.++|++|++.++ .. +..|.+.+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEe
Confidence 5899999999999999999999999999999864 347999999999999999999888 44 55444443
No 123
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.58 E-value=4.5e-15 Score=118.66 Aligned_cols=73 Identities=21% Similarity=0.467 Sum_probs=64.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC-----CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR-----PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~-----~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||..+|+++|+++|++||+|..|.|+.+ ++|||||+|.+.++|++||+.||+.. +..|.|.++.++
T Consensus 73 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 152 (165)
T 1rk8_A 73 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVK 152 (165)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 57999999999999999999999999999999753 47999999999999999999999987 666666665443
No 124
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.58 E-value=7.5e-15 Score=115.88 Aligned_cols=73 Identities=36% Similarity=0.617 Sum_probs=65.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||+++|+++|+++|++||+|..|.|+. .++|||||+|.+.++|++|++.||+.. +..|.+..+.++
T Consensus 71 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 71 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 150 (158)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 5899999999999999999999999999999864 468999999999999999999999987 666777766544
No 125
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.58 E-value=6.2e-15 Score=110.55 Aligned_cols=70 Identities=26% Similarity=0.431 Sum_probs=61.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee--CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeec
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR--RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHN 71 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~--~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~ 71 (223)
++|||+|||..+|+++|+++|++||+|..|.++. .++|||||+|.+.++|++|++.|||.. +..|.+..+
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 9 RILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 5899999999999999999999999999999974 458999999999999999999999987 544444444
No 126
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.58 E-value=6.3e-15 Score=122.23 Aligned_cols=72 Identities=22% Similarity=0.341 Sum_probs=65.8
Q ss_pred cEEEEecCC-CCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLD-PRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp-~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+||| ..+|+++|+++|++||+|.+|+++.+.+|||||+|.+.++|++||+.|||.. +..|.|..+..
T Consensus 5 ~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 5 PVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp SEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 689999999 7999999999999999999999988789999999999999999999999998 77777766643
No 127
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.58 E-value=1.7e-15 Score=127.82 Aligned_cols=70 Identities=17% Similarity=0.309 Sum_probs=61.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCC--CeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeec
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFG--VLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHN 71 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G--~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~ 71 (223)
++|||+||++++|+++|+++|++|| +|+.|.|+. +++|||||+|.+.++|++||+.||+.. +..|.|..+
T Consensus 69 ~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 69 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 6899999999999999999999999 999999975 357899999999999999999999887 555555543
No 128
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=7e-15 Score=105.83 Aligned_cols=71 Identities=18% Similarity=0.367 Sum_probs=63.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC----CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR----PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~----~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||.++|+++|+++|++| +|..|.|+.+ ++|||||+|.+.++|++|++ ||+.. +..|.+..+.++
T Consensus 11 ~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 11 HTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKSG 87 (91)
T ss_dssp CEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESSC
T ss_pred cEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCcC
Confidence 589999999999999999999999 9999998753 47899999999999999999 99987 777777777554
No 129
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.8e-15 Score=112.18 Aligned_cols=60 Identities=22% Similarity=0.388 Sum_probs=55.5
Q ss_pred cEEEE--ecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC
Q 041602 2 SRVYV--GNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN 62 (223)
Q Consensus 2 ttLfV--gnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~ 62 (223)
.+||| |||+.++|+++|+++|++||+|..|.|+. .+|||||+|++.++|++|++.|||.+
T Consensus 26 ~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-~rgfaFV~f~~~~~A~~Ai~~lnG~~ 87 (114)
T 2cq2_A 26 QSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKE 87 (114)
T ss_dssp SEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-TCSCEEEEESSHHHHHHHHHHTTTCE
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 47999 77999999999999999999999998864 48999999999999999999999973
No 130
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=4.5e-15 Score=108.89 Aligned_cols=74 Identities=26% Similarity=0.386 Sum_probs=59.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEe--eCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVA--RRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKGG 75 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~--~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~~ 75 (223)
++|||+|||.++|+++|+++|++|+.|.-+... +.++|||||+|.+.++|++|++.||+.. +..|.|.++.++.
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 93 (102)
T 2fc8_A 16 KTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 93 (102)
T ss_dssp SSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCC
Confidence 589999999999999999999988644333221 2347899999999999999999999987 6677777765543
No 131
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.5e-14 Score=104.89 Aligned_cols=72 Identities=21% Similarity=0.346 Sum_probs=60.0
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 1 MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 1 ~ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
+.+|||+|||.++|+++|+++|++||+|..|.+......||||+|.+.++|++|++ ||+.. +..|.|..+.+
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 36899999999999999999999999999983322211299999999999999999 99987 77777776543
No 132
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.57 E-value=8.5e-15 Score=112.95 Aligned_cols=69 Identities=29% Similarity=0.536 Sum_probs=62.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEee
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSH 70 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~ 70 (223)
++|||+|||..+|+++|+++|++||+|..|.++. .++|||||+|.+.++|++|++.||+.. +..|.|..
T Consensus 64 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 64 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred cEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 5899999999999999999999999999999864 368999999999999999999999886 66666654
No 133
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.56 E-value=2.7e-15 Score=110.30 Aligned_cols=69 Identities=23% Similarity=0.501 Sum_probs=60.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC------CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeecc
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR------PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNS 72 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~------~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~ 72 (223)
++|||+|||.++++++|+++|++|| |..|.|+.+ ++|||||+|.+.++|++|+ .||+.. +..|.+..+.
T Consensus 20 ~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~ 96 (100)
T 2j76_E 20 YTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVAD 96 (100)
T ss_dssp CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEecc
Confidence 6899999999999999999999999 999998643 4899999999999999999 899987 5555555543
No 134
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=9.6e-15 Score=108.15 Aligned_cols=71 Identities=20% Similarity=0.269 Sum_probs=60.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEE-EEEee----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRS-VWVAR----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~-v~i~~----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||+++|+++|+++|++||.|.. |.|+. .++|||||+|.+.++|++||+. ++.. +..|+|..+.+
T Consensus 16 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~ 93 (104)
T 1wg5_A 16 GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSR 93 (104)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCH
Confidence 58999999999999999999999999987 77753 4689999999999999999986 7766 66666666543
No 135
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.56 E-value=1e-14 Score=103.67 Aligned_cols=67 Identities=28% Similarity=0.517 Sum_probs=60.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcC----C-------CeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEE
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMF----G-------VLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVEL 68 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~----G-------~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v 68 (223)
++|||+|||.++++++|+++|++| | +|..+.+..+ +|||||+|.+.++|++|+ .||+.. +..|.+
T Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 84 (87)
T 2hzc_A 7 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKI 84 (87)
T ss_dssp GEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-SSEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-CcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEE
Confidence 689999999999999999999999 8 9999998754 899999999999999999 999987 777766
Q ss_pred ee
Q 041602 69 SH 70 (223)
Q Consensus 69 ~~ 70 (223)
.+
T Consensus 85 ~r 86 (87)
T 2hzc_A 85 RR 86 (87)
T ss_dssp EC
T ss_pred eC
Confidence 54
No 136
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.56 E-value=1.3e-14 Score=108.55 Aligned_cols=72 Identities=19% Similarity=0.398 Sum_probs=62.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||.++|+++|+++|++||+|..|.|+. .++|||||+|.+.++|++|++.++ .. +..|.+..+.++
T Consensus 26 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~l~V~~a~~~ 104 (109)
T 2rs2_A 26 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVAFPR 104 (109)
T ss_dssp CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEEEEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEEEEEEEccCC
Confidence 5899999999999999999999999999999974 458999999999999999999765 43 677777666543
No 137
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.55 E-value=4.1e-15 Score=114.61 Aligned_cols=72 Identities=19% Similarity=0.389 Sum_probs=61.7
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEE--EEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCC----C--cEEEEE
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRS--VWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGK----N--GWRVEL 68 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~--v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~----~--g~~V~v 68 (223)
++|||+|||+++|+++|+++|++||+|.. |.|+. .++|||||+|.+. +|++|++.||+. . +..|.|
T Consensus 24 ~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V 102 (131)
T 2m2b_A 24 DTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINV 102 (131)
T ss_dssp CEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEE
Confidence 58999999999999999999999999966 88864 4589999999999 999999999998 5 555555
Q ss_pred eeccCC
Q 041602 69 SHNSKG 74 (223)
Q Consensus 69 ~~~~~~ 74 (223)
..+.+.
T Consensus 103 ~~a~~~ 108 (131)
T 2m2b_A 103 EFAKGS 108 (131)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 555443
No 138
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.55 E-value=4.6e-15 Score=115.32 Aligned_cols=73 Identities=36% Similarity=0.617 Sum_probs=63.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||.++|+++|+++|++||+|..|.|+. .++|||||+|.+.++|++|++.||+.. +..|.|.++.++
T Consensus 48 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~ 127 (135)
T 2lea_A 48 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 127 (135)
T ss_dssp CCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 5899999999999999999999999999999863 468999999999999999999999987 555555555443
No 139
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.54 E-value=2.8e-15 Score=109.93 Aligned_cols=72 Identities=21% Similarity=0.376 Sum_probs=59.9
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEE----eeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWV----ARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i----~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||.++|+++|+++|++||+|..+.+ .+.++|||||+|.+.++|++|++ ||+.. +..|.|..+.++
T Consensus 18 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~ 95 (101)
T 1fj7_A 18 FNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGR 95 (101)
T ss_dssp EEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCCC
Confidence 58999999999999999999999998766222 24679999999999999999998 99887 666666665443
No 140
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.6e-14 Score=108.63 Aligned_cols=70 Identities=23% Similarity=0.267 Sum_probs=62.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
.+|||+|||+++|+++|+++|++| .|..|.|+. .++|||||+|.+.++|++|| .||+.. +..|+|..+.+
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 489999999999999999999999 899999874 46899999999999999999 688887 77888877643
No 141
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.31 E-value=4.5e-16 Score=117.27 Aligned_cols=73 Identities=27% Similarity=0.475 Sum_probs=62.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEE--------EEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEE
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRS--------VWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRV 66 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~--------v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V 66 (223)
++|||+|||.++++++|+++|++||+|.. |.|+. .++|||||+|.+.++|++|++.||+.. +..|
T Consensus 8 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (116)
T 2lcw_A 8 NTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPI 87 (116)
Confidence 58999999999999999999999999988 77753 458999999999999999999999987 6666
Q ss_pred EEeeccCC
Q 041602 67 ELSHNSKG 74 (223)
Q Consensus 67 ~v~~~~~~ 74 (223)
.|..+.++
T Consensus 88 ~V~~a~~~ 95 (116)
T 2lcw_A 88 KVSFATRR 95 (116)
Confidence 66665443
No 142
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.53 E-value=2.7e-14 Score=118.23 Aligned_cols=71 Identities=35% Similarity=0.568 Sum_probs=63.0
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeec
Q 041602 1 MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHN 71 (223)
Q Consensus 1 ~ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~ 71 (223)
++||||+|||+++||++|+++|++||+|.+|.|+. .++|||||+|.+.++|++|++.+|+.. +..+.+..+
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 47999999999999999999999999999999975 347899999999999999999999887 666665554
No 143
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.53 E-value=7.4e-15 Score=111.45 Aligned_cols=70 Identities=21% Similarity=0.231 Sum_probs=61.9
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCC---eEEEEEee----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeecc
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGV---LRSVWVAR----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNS 72 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~---I~~v~i~~----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~ 72 (223)
++|||+|||+++|+++|+++|++||. |..|.|+. +++|||||+|.+.++|++||+ ||+.. +..|+|..+.
T Consensus 18 ~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 96 (118)
T 2db1_A 18 YVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSH 96 (118)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECC
Confidence 58999999999999999999999998 88998874 357899999999999999999 99876 7777776653
No 144
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.9e-14 Score=106.71 Aligned_cols=61 Identities=25% Similarity=0.481 Sum_probs=56.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC----CCCEEEEEEcCHHHHHHHHHHhCCCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR----PPGYAFVEFDDRRDAVDAIRALDGKN 62 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~----~rGfaFV~F~~~e~A~~Al~~lng~~ 62 (223)
++|||+|||.++|+++|+++|++||+|..|.|+.+ ++|||||+|.+.++|++|++.||+..
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 90 (114)
T 1x5o_A 26 TNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKF 90 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 68999999999999999999999999999999753 47899999999999999999999875
No 145
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.1e-14 Score=109.61 Aligned_cols=67 Identities=31% Similarity=0.496 Sum_probs=56.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee--------CCCCEEEEEEcCHHHHHHHHHHhCCCCcEEEEEe
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR--------RPPGYAFVEFDDRRDAVDAIRALDGKNGWRVELS 69 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~--------~~rGfaFV~F~~~e~A~~Al~~lng~~g~~V~v~ 69 (223)
++|||+|||+++|+++|+++|++||+|. +.++. .++|||||+|.+.++|++||+.|++..+..+.+.
T Consensus 9 ~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~ 83 (114)
T 2dnl_A 9 RKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCV 83 (114)
T ss_dssp CCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEE
T ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEec
Confidence 6899999999999999999999999999 66642 4589999999999999999999944334444433
No 146
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=9.7e-15 Score=109.87 Aligned_cols=71 Identities=20% Similarity=0.173 Sum_probs=61.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCe-EEEEEee----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVL-RSVWVAR----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I-~~v~i~~----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
.+|||+|||+++|+++|+++|++||.| ..|.|+. .++|||||+|.+.++|++||+. |+.. +..|.|..+.+
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~ 93 (114)
T 2cpy_A 16 VCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTL 93 (114)
T ss_dssp CEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECH
T ss_pred cEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCH
Confidence 589999999999999999999999999 7888863 4689999999999999999986 7766 67777766643
No 147
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.6e-14 Score=103.64 Aligned_cols=72 Identities=17% Similarity=0.305 Sum_probs=61.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEE-EeeC-CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVW-VARR-PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~-i~~~-~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||+++|+++|+++|++||+|..|+ ++.+ ..+.|||+|.+.++|++|++.||+.. +..|.+..+.+
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 16 RKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 5799999999999999999999999999994 6543 34569999999999999999999987 55555555544
No 148
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.52 E-value=4.4e-15 Score=102.91 Aligned_cols=66 Identities=21% Similarity=0.483 Sum_probs=56.3
Q ss_pred EEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEe
Q 041602 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELS 69 (223)
Q Consensus 3 tLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~ 69 (223)
+|||+|||.++++++|+++|++||+|..|.++. .++|||||+|.+.++|++|++. ++.. +..|.+.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~ 73 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIK 73 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 699999999999999999999999999998863 4589999999999999999984 5554 5444443
No 149
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.51 E-value=3.5e-15 Score=117.07 Aligned_cols=71 Identities=30% Similarity=0.292 Sum_probs=60.2
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
.+|||+|||+++||++|+++|++|| |..|.|+. +++|||||+|++.++|++|| .+|+.. +..|+|..+.+.
T Consensus 47 ~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~ 123 (139)
T 2hgn_A 47 HCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTT 123 (139)
T ss_dssp CCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCC
Confidence 4799999999999999999999999 66888864 46899999999999999999 688876 666666655443
No 150
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.51 E-value=9.3e-15 Score=114.22 Aligned_cols=70 Identities=21% Similarity=0.209 Sum_probs=61.7
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCC---eEEEEEee----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeecc
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGV---LRSVWVAR----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNS 72 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~---I~~v~i~~----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~ 72 (223)
++|||+|||+++|+++|+++|++||. |..|.|+. +++|||||+|.+.++|++||+ ||+.. +..|+|..+.
T Consensus 45 ~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~ 123 (136)
T 2hgl_A 45 FVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSH 123 (136)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECC
Confidence 58999999999999999999999999 88888874 457899999999999999999 99886 6777776653
No 151
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.51 E-value=3.5e-14 Score=115.35 Aligned_cols=69 Identities=35% Similarity=0.546 Sum_probs=61.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee----CCCCEEEEEEcCHHHHHHHHHHhCCCC--c--EEEEEee
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR----RPPGYAFVEFDDRRDAVDAIRALDGKN--G--WRVELSH 70 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~----~~rGfaFV~F~~~e~A~~Al~~lng~~--g--~~V~v~~ 70 (223)
++|||+|||..+++++|+++|++||+|+.|.|+. .++|||||+|.+.++|++|++.||+.. + +.|+++.
T Consensus 89 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 89 AKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp EEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 5899999999999999999999999999999974 468999999999999999999999987 4 4555544
No 152
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.8e-15 Score=113.62 Aligned_cols=69 Identities=19% Similarity=0.263 Sum_probs=58.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEE-e----eCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeec
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWV-A----RRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHN 71 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i-~----~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~ 71 (223)
++|||+|||+++|+++|+++|++||+|..+.+ . +.++|||||+|.+.++|++||+ ||+.. +..|.|..+
T Consensus 26 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 26 FCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 58999999999999999999999999877433 3 2458999999999999999999 99887 555555554
No 153
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.50 E-value=4.8e-14 Score=107.70 Aligned_cols=70 Identities=21% Similarity=0.362 Sum_probs=60.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|| ++|+++|+++|++||+|..|.+. .++|||||+|.+.++|++|++.||+.. +..|.|.++.+.
T Consensus 40 ~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 40 NTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 68999996 69999999999999999999986 679999999999999999999999987 555555555443
No 154
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.50 E-value=3.6e-14 Score=110.48 Aligned_cols=72 Identities=26% Similarity=0.421 Sum_probs=61.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEE--------EEEe--eCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEe
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRS--------VWVA--RRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELS 69 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~--------v~i~--~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~ 69 (223)
++|||+|||+.+|+++|+++|++||.|.. +.+. +.++|||||+|.+.++|++|++.||+.. +..|.|.
T Consensus 46 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 125 (143)
T 3egn_A 46 CRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQ 125 (143)
T ss_dssp SEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 58999999999999999999999998876 3332 3678999999999999999999999998 7666666
Q ss_pred eccC
Q 041602 70 HNSK 73 (223)
Q Consensus 70 ~~~~ 73 (223)
.+..
T Consensus 126 ~a~~ 129 (143)
T 3egn_A 126 FARS 129 (143)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 6644
No 155
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.49 E-value=2.9e-14 Score=104.62 Aligned_cols=69 Identities=26% Similarity=0.517 Sum_probs=59.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC----CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeecc
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR----PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNS 72 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~----~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~ 72 (223)
++|||+|||.++++++|+++|++||+|..|.++.+ ++|||||+|.+.++|++|++ ++.. +..+.+.++.
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 10 NTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 58999999999999999999999999999999753 57899999999999999998 5544 5556555554
No 156
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.49 E-value=1.6e-13 Score=107.37 Aligned_cols=71 Identities=25% Similarity=0.434 Sum_probs=63.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC-----CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeecc
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR-----PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNS 72 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~-----~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~ 72 (223)
++|||+|||+++|+++|+++|++||+|..+.++.+ ++|||||+|.+.++|++|++.|++.. +..+.+..+.
T Consensus 3 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 68999999999999999999999999999999753 35899999999999999999999987 6777776654
No 157
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.49 E-value=7.1e-14 Score=115.64 Aligned_cols=72 Identities=28% Similarity=0.484 Sum_probs=64.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC---CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR---PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~---~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||..+|+++|+++|++||+|..|.|+.+ ++|||||+|.+.++|++|++.|||.. +..|.|.++.+
T Consensus 104 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 104 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 58999999999999999999999999999999753 47899999999999999999999998 77777776644
No 158
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.49 E-value=1.4e-13 Score=108.09 Aligned_cols=72 Identities=29% Similarity=0.506 Sum_probs=64.2
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC-----CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR-----PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~-----~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||.++++++|+++|++||+|..|.++.+ ++|||||+|.+.++|++|++.|++.. +..|.+.++.+
T Consensus 4 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 4 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp SEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 68999999999999999999999999999998753 46899999999999999999999987 77777776643
No 159
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.48 E-value=1e-14 Score=108.51 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=59.9
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCC---eEEEEEee----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeec
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGV---LRSVWVAR----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHN 71 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~---I~~v~i~~----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~ 71 (223)
++|||+|||+++|+++|+++|++||. |..|.|+. .++|||||+|.+.++|++||+ +|+.. +..|++..+
T Consensus 12 ~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a 89 (107)
T 2lmi_A 12 FLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEI 89 (107)
T ss_dssp CEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEEC
Confidence 58999999999999999999999988 88998864 468999999999999999999 88876 555555554
No 160
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.2e-13 Score=107.95 Aligned_cols=72 Identities=31% Similarity=0.489 Sum_probs=63.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
.+|||+|||.++|+++|+++|++||+|..|.++. .++|||||+|.+.++|++|++.|++.. +..+.+..+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 3899999999999999999999999999999974 357899999999999999999999997 66667666533
No 161
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.2e-13 Score=101.32 Aligned_cols=66 Identities=23% Similarity=0.288 Sum_probs=56.6
Q ss_pred EEEEecCCCCCCHHH----HHHHHHcCC-CeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 3 RVYVGNLDPRVSERD----LEDEFRMFG-VLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 3 tLfVgnLp~~~te~~----L~~~F~~~G-~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
.|||+|||+.+++++ |+++|++|| +|.+| . .|+|||.|.+.++|++|++.|||.+ +..|.+..+..
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--t---gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~ 83 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--T---GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPK 83 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--C---TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCC
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--e---cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCC
Confidence 499999999999987 568999994 99888 2 4999999999999999999999998 66666666544
No 162
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.47 E-value=1.8e-13 Score=110.41 Aligned_cols=74 Identities=23% Similarity=0.470 Sum_probs=66.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC-----CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR-----PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~-----~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||..+++++|+++|++||+|..|.++.+ ++|||||+|.+.++|++|++.||+.. +..|.+.++.++
T Consensus 115 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 115 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVG 194 (198)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 68999999999999999999999999999999754 37899999999999999999999987 777777777654
Q ss_pred C
Q 041602 75 G 75 (223)
Q Consensus 75 ~ 75 (223)
.
T Consensus 195 ~ 195 (198)
T 2yh0_A 195 A 195 (198)
T ss_dssp C
T ss_pred C
Confidence 3
No 163
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.47 E-value=1.2e-13 Score=109.04 Aligned_cols=61 Identities=31% Similarity=0.557 Sum_probs=56.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-------CCCCEEEEEEcCHHHHHHHHHHhCCCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-------RPPGYAFVEFDDRRDAVDAIRALDGKN 62 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-------~~rGfaFV~F~~~e~A~~Al~~lng~~ 62 (223)
++|||+|||+++|+++|+++|++||+|..|.++. .++|||||+|.+.++|++|++.|++..
T Consensus 4 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~ 71 (175)
T 3nmr_A 4 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMK 71 (175)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcE
Confidence 5899999999999999999999999999999874 357899999999999999999999865
No 164
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.46 E-value=1.9e-13 Score=106.77 Aligned_cols=71 Identities=27% Similarity=0.536 Sum_probs=63.9
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeecc
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNS 72 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~ 72 (223)
++|||+|||..+|+++|+++|++||+|..+.++. .++|||||+|.+.++|++|++.||+.. +..|.+.++.
T Consensus 88 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 88 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp EEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred ceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 5799999999999999999999999999999974 347899999999999999999999998 7777777664
No 165
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.46 E-value=1.7e-13 Score=108.28 Aligned_cols=70 Identities=21% Similarity=0.461 Sum_probs=63.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC-----CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeec
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR-----PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHN 71 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~-----~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~ 71 (223)
++|||+|||..+|+++|+++|++||+|..+.++.+ ++|||||+|.+.++|++|++.||+.. +..|.+.++
T Consensus 95 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 95 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 57999999999999999999999999999999754 37899999999999999999999987 777776654
No 166
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.46 E-value=1.3e-13 Score=115.23 Aligned_cols=72 Identities=26% Similarity=0.387 Sum_probs=64.8
Q ss_pred cEEEEecCCC-CCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDP-RVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||. ++++++|+++|++||+|..|.++.+.+|||||+|.+.++|++|++.||+.. +..|.+..+..
T Consensus 35 ~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 35 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp SEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 5899999999 999999999999999999999998878999999999999999999999987 66666665543
No 167
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=2.6e-14 Score=109.83 Aligned_cols=70 Identities=21% Similarity=0.237 Sum_probs=59.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCe----EEEEEee----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeec
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVL----RSVWVAR----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHN 71 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I----~~v~i~~----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~ 71 (223)
++|||+|||+++|+++|+++|++||+| ..|.|+. +++|||||+|.+.++|++||+. |+.. +..|+|..+
T Consensus 24 ~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a 102 (123)
T 2dha_A 24 VIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRS 102 (123)
T ss_dssp CEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEEC
Confidence 589999999999999999999999986 5788764 3579999999999999999985 6665 667777665
Q ss_pred c
Q 041602 72 S 72 (223)
Q Consensus 72 ~ 72 (223)
.
T Consensus 103 ~ 103 (123)
T 2dha_A 103 T 103 (123)
T ss_dssp C
T ss_pred C
Confidence 3
No 168
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.46 E-value=2.3e-13 Score=111.31 Aligned_cols=70 Identities=27% Similarity=0.510 Sum_probs=62.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeec
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHN 71 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~ 71 (223)
++|||+|||.++|+++|+++|++||+|..|.++. .++|||||+|.+.++|++|++.|++.. +..|.+..+
T Consensus 29 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 29 SRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp TEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 6899999999999999999999999999999964 368999999999999999999999887 666666544
No 169
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.45 E-value=3.1e-13 Score=110.49 Aligned_cols=73 Identities=25% Similarity=0.545 Sum_probs=63.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC-----CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR-----PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~-----~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||.++|+++|+++|++||+|..|.++.+ ++|||||+|.+.++|++|++.||+.. +..|.|.++...
T Consensus 126 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 126 NRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp CEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSC
T ss_pred cEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCC
Confidence 58999999999999999999999999999999754 37899999999999999999999987 555666555443
No 170
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.45 E-value=1.1e-13 Score=112.37 Aligned_cols=71 Identities=27% Similarity=0.390 Sum_probs=63.8
Q ss_pred cEEEEecCCC-CCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeecc
Q 041602 2 SRVYVGNLDP-RVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNS 72 (223)
Q Consensus 2 ttLfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~ 72 (223)
++|||+|||+ ++++++|+++|++||+|..|.++.+.+|||||+|.+.++|++|++.||+.. +..|.+..+.
T Consensus 4 ~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 4 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 6899999999 999999999999999999999988778999999999999999999999987 5555555543
No 171
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.45 E-value=2.3e-13 Score=109.59 Aligned_cols=72 Identities=22% Similarity=0.455 Sum_probs=61.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC-----CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR-----PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~-----~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||.++|+++|+++|++||+|..|.++.+ ++|||||+|.+.++|++|++. ++.. +..|.+.++.++
T Consensus 105 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k 183 (196)
T 1l3k_A 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSK 183 (196)
T ss_dssp SEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC--
T ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCCh
Confidence 58999999999999999999999999999999753 478999999999999999985 5655 777777776554
No 172
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.44 E-value=2.7e-13 Score=106.99 Aligned_cols=70 Identities=26% Similarity=0.480 Sum_probs=61.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC----CCCEEEEEEcCHHHHHHHHHHhCCCC---c--EEEEEeec
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR----PPGYAFVEFDDRRDAVDAIRALDGKN---G--WRVELSHN 71 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~----~rGfaFV~F~~~e~A~~Al~~lng~~---g--~~V~v~~~ 71 (223)
++|||+|||..+|+++|+++|++||+|..+.++.+ ++|||||+|.+.++|++|++.|||.. + ..|.|.++
T Consensus 96 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 96 RKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred CeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 57999999999999999999999999999999753 47899999999999999999999875 1 45555543
No 173
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.44 E-value=9.3e-14 Score=107.24 Aligned_cols=68 Identities=16% Similarity=0.189 Sum_probs=56.9
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeE--EEEEee----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeec
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLR--SVWVAR----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHN 71 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~--~v~i~~----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~ 71 (223)
++|||+|||+++|+++|+++|++| .|. .|.|+. .++|||||+|.+.++|++||+. ++.. +..|+|..+
T Consensus 43 ~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 43 GFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFKS 118 (126)
T ss_dssp CEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEEC
Confidence 589999999999999999999999 677 888863 4689999999999999999985 5554 555555544
No 174
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.43 E-value=4.3e-13 Score=114.65 Aligned_cols=71 Identities=27% Similarity=0.309 Sum_probs=63.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC---cEEEEEeecc
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN---GWRVELSHNS 72 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~---g~~V~v~~~~ 72 (223)
++|||+|||..+|+++|+++|++||+|..|.++.+.+|||||+|.+.++|++|++.|||.. +..|.|.+++
T Consensus 208 ~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 208 HILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 5799999999999999999999999999999987767999999999999999999999986 5566666553
No 175
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.43 E-value=2.7e-13 Score=115.42 Aligned_cols=60 Identities=22% Similarity=0.354 Sum_probs=56.0
Q ss_pred cEEEEecCCCCC---------CHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC
Q 041602 2 SRVYVGNLDPRV---------SERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN 62 (223)
Q Consensus 2 ttLfVgnLp~~~---------te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~ 62 (223)
++|||+||+..+ +|++|+++|++||+|..|.|+. ++|||||+|.+.++|++|+++|++..
T Consensus 135 rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 135 KTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp CEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred ceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 689999999998 7999999999999999999974 48999999999999999999999864
No 176
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.42 E-value=4.5e-13 Score=107.92 Aligned_cols=70 Identities=23% Similarity=0.455 Sum_probs=60.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC-----CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeecc
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR-----PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNS 72 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~-----~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~ 72 (223)
++|||+|||+++|+++|+++|++||+|..|.++.+ ++|||||+|.+.++|++|++. ++.. +..|.+..+.
T Consensus 14 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~ 90 (196)
T 1l3k_A 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAV 90 (196)
T ss_dssp GEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeeccc
Confidence 68999999999999999999999999999999753 478999999999999999975 6554 6667666653
No 177
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.42 E-value=3.2e-13 Score=107.26 Aligned_cols=72 Identities=24% Similarity=0.351 Sum_probs=63.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||..+|+++|+++|++||+|..+...+.++|||||+|.+.++|++|++.|||.. +..|.+.++.+
T Consensus 100 ~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 100 RTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp GEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 5899999999999999999999999998872234678999999999999999999999987 77777777654
No 178
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.42 E-value=2.7e-13 Score=106.58 Aligned_cols=71 Identities=17% Similarity=0.427 Sum_probs=61.7
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||..+|+++|+++|++||+|..+.++. .++|||||+|.+.++|++|++ +++.. +..|.+.++.+
T Consensus 88 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 88 GKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 4899999999999999999999999999999864 357999999999999999998 77766 66666666644
No 179
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.41 E-value=3.8e-13 Score=110.57 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=61.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee----CCCCEEEEEEcCHHHHHHHHHHhCCCC-cEEEEEeecc
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR----RPPGYAFVEFDDRRDAVDAIRALDGKN-GWRVELSHNS 72 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~----~~rGfaFV~F~~~e~A~~Al~~lng~~-g~~V~v~~~~ 72 (223)
++|||+|||.++|+++|+++|++||+|..|.|+. .++|||||+|++.++|++|++.++... |..|.|.++.
T Consensus 110 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 110 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 185 (193)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETT
T ss_pred CEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhH
Confidence 5899999999999999999999999999999974 457999999999999999998665533 7777776653
No 180
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.41 E-value=6.2e-13 Score=103.97 Aligned_cols=61 Identities=28% Similarity=0.597 Sum_probs=56.9
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC-----CCCEEEEEEcCHHHHHHHHHHhCCCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR-----PPGYAFVEFDDRRDAVDAIRALDGKN 62 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~-----~rGfaFV~F~~~e~A~~Al~~lng~~ 62 (223)
++|||+|||..+++++|+++|++||+|..+.++.+ ++|||||+|.+.++|++|++.|||..
T Consensus 89 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 154 (167)
T 1fxl_A 89 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 154 (167)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred CcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCc
Confidence 57999999999999999999999999999998754 37899999999999999999999987
No 181
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=9.1e-13 Score=97.70 Aligned_cols=62 Identities=21% Similarity=0.215 Sum_probs=52.6
Q ss_pred CCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCCcEEEEEeecc
Q 041602 11 PRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKNGWRVELSHNS 72 (223)
Q Consensus 11 ~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~g~~V~v~~~~ 72 (223)
..+++++|+++|++||+|..|.|++.++|||||+|++.++|++|++.+++..+..|.|.++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~ 88 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLE 88 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSS
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEcc
Confidence 45899999999999999999999988899999999999999999998777664444444443
No 182
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.40 E-value=7.2e-13 Score=104.03 Aligned_cols=68 Identities=29% Similarity=0.544 Sum_probs=59.9
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC-----CCCEEEEEEcCHHHHHHHHHHhCCCC--c--EEEEEe
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR-----PPGYAFVEFDDRRDAVDAIRALDGKN--G--WRVELS 69 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~-----~rGfaFV~F~~~e~A~~Al~~lng~~--g--~~V~v~ 69 (223)
++|||+|||..+++++|+++|++||+|..+.++.+ ++|||||+|.+.++|++|++.||+.. + ..|.|.
T Consensus 90 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 90 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 58999999999999999999999999999998753 36899999999999999999999986 3 444444
No 183
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.40 E-value=8.8e-13 Score=112.72 Aligned_cols=72 Identities=25% Similarity=0.505 Sum_probs=62.8
Q ss_pred cEEEEecCCCCCCHHHHH----HHHHcCCCeEEEEEee--CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLE----DEFRMFGVLRSVWVAR--RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~----~~F~~~G~I~~v~i~~--~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||.++|+++|+ ++|++||+|..|.++. +++|||||+|.+.++|++|++.||+.. +..|.|.++..
T Consensus 10 ~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 89 (282)
T 3pgw_A 10 HTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKT 89 (282)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEecc
Confidence 689999999999999976 8999999999999864 568999999999999999999999987 65666655533
No 184
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.38 E-value=5.3e-13 Score=104.84 Aligned_cols=70 Identities=16% Similarity=0.451 Sum_probs=57.7
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcCHHHHHHHHHHhCCCCcEEEEEeec
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDDRRDAVDAIRALDGKNGWRVELSHN 71 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~~e~A~~Al~~lng~~g~~V~v~~~ 71 (223)
++|||+|||.++|+++|+++|++||+|..|.++. .++|||||+|.+.++|++|++.++...+..|.+..+
T Consensus 4 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 4 CKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRA 78 (167)
T ss_dssp GEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccc
Confidence 6899999999999999999999999999999864 457999999999999999998522112555544443
No 185
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.38 E-value=1.5e-12 Score=108.84 Aligned_cols=72 Identities=22% Similarity=0.369 Sum_probs=63.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCC-CeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC---cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFG-VLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN---GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~---g~~V~v~~~~~ 73 (223)
++|||+|||..+++++|+++|++|| +|..|.++.+.+|||||+|.+.++|++|++.||+.. +..|.+.++.+
T Consensus 152 ~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 152 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp SEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred CEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 5799999999999999999999999 999999976678999999999999999999999886 45666665543
No 186
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.37 E-value=8.2e-13 Score=107.13 Aligned_cols=71 Identities=23% Similarity=0.374 Sum_probs=62.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCC-CeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC---cEEEEEeecc
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFG-VLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN---GWRVELSHNS 72 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~---g~~V~v~~~~ 72 (223)
++|||+|||..+++++|+++|++|| +|..|.++.+.+|+|||+|.+.++|++|++.|||.. +..|.+.++.
T Consensus 121 ~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 121 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 4799999999999999999999999 999999977679999999999999999999999886 4445555443
No 187
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.37 E-value=1.2e-12 Score=111.57 Aligned_cols=70 Identities=27% Similarity=0.521 Sum_probs=62.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeecc
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNS 72 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~ 72 (223)
++|||+|||.++|+++|+++|++||+|..|.+.. .+|||||+|.+.++|++|++.||+.. +..|.+..+.
T Consensus 23 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 23 CRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp GEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 5899999999999999999999999999999864 58999999999999999999999987 6666666554
No 188
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.35 E-value=1.2e-12 Score=108.34 Aligned_cols=61 Identities=21% Similarity=0.247 Sum_probs=55.7
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCe--EEEEEee---CCCCEEEEEEcCHHHHHHHHHHhCCCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVL--RSVWVAR---RPPGYAFVEFDDRRDAVDAIRALDGKN 62 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I--~~v~i~~---~~rGfaFV~F~~~e~A~~Al~~lng~~ 62 (223)
++|||+|||+++|+++|+++|++||.| ..+.+.. +.+|||||+|.+.++|.+||..||+.+
T Consensus 124 ~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~ 189 (205)
T 3tyt_A 124 NVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQ 189 (205)
T ss_dssp SEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCE
T ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCC
Confidence 379999999999999999999999998 8888864 346899999999999999999999886
No 189
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.35 E-value=3.2e-12 Score=100.84 Aligned_cols=70 Identities=27% Similarity=0.490 Sum_probs=61.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcC----C-------CeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEE
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMF----G-------VLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVEL 68 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~----G-------~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v 68 (223)
++|||+|||.++|+++|+++|++| | .|..+.+. .++|||||+|.+.++|++|+ .||+.. +..+.+
T Consensus 5 ~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v 82 (172)
T 2g4b_A 5 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKI 82 (172)
T ss_dssp GEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-TTTTEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred cEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-CCCCEEEEEeCCHHHHHHHH-HhCCcEecCceeee
Confidence 689999999999999999999999 7 77777765 45899999999999999999 799987 777777
Q ss_pred eeccC
Q 041602 69 SHNSK 73 (223)
Q Consensus 69 ~~~~~ 73 (223)
..+..
T Consensus 83 ~~~~~ 87 (172)
T 2g4b_A 83 RRPHD 87 (172)
T ss_dssp ECCSS
T ss_pred cCCcc
Confidence 76543
No 190
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.35 E-value=1.2e-12 Score=116.82 Aligned_cols=60 Identities=22% Similarity=0.373 Sum_probs=55.5
Q ss_pred cEEEEec--CCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC
Q 041602 2 SRVYVGN--LDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN 62 (223)
Q Consensus 2 ttLfVgn--Lp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~ 62 (223)
.+|||+| |+..+||++|+++|++||+|+.|.+.. .||||||+|++.++|++|+++|||++
T Consensus 19 ~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-~kgfaFV~f~~~~~A~~Ai~~lnG~~ 80 (345)
T 3tht_A 19 QSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKE 80 (345)
T ss_dssp SEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-TCSEEEEEESSHHHHHHHHHHTTTCE
T ss_pred CEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCc
Confidence 5899999 578999999999999999999988764 68999999999999999999999986
No 191
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.34 E-value=1.5e-12 Score=100.74 Aligned_cols=70 Identities=17% Similarity=0.314 Sum_probs=57.7
Q ss_pred cEEEEecC----CCCCCHHHHHHHHHcCCCeEEEEEee-----CCCCEEEEEEcC----HHH----HHHHHH--HhCCCC
Q 041602 2 SRVYVGNL----DPRVSERDLEDEFRMFGVLRSVWVAR-----RPPGYAFVEFDD----RRD----AVDAIR--ALDGKN 62 (223)
Q Consensus 2 ttLfVgnL----p~~~te~~L~~~F~~~G~I~~v~i~~-----~~rGfaFV~F~~----~e~----A~~Al~--~lng~~ 62 (223)
++|||+|| |+.|++++|+++|++||+|..+.++. .++|||||+|.+ +++ |.+|++ .+|+..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 99999999999999999999999975 458999999996 433 788887 678776
Q ss_pred --cEEEEEeec
Q 041602 63 --GWRVELSHN 71 (223)
Q Consensus 63 --g~~V~v~~~ 71 (223)
|..|.|...
T Consensus 83 I~Gr~irV~ln 93 (136)
T 2j8a_A 83 IMGFKFEVILN 93 (136)
T ss_dssp ETTEEEEEEEC
T ss_pred ecCcEEEEEEC
Confidence 666666654
No 192
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.33 E-value=4.7e-12 Score=108.26 Aligned_cols=69 Identities=19% Similarity=0.327 Sum_probs=61.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeecc
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNS 72 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~ 72 (223)
++|||+|||.++|+++|+++|++|| |..+.+ ..++|||||+|.+.++|++|++.||+.. +..|.+..+.
T Consensus 23 ~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 23 RKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp CEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 6899999999999999999999999 999888 5679999999999999999999999987 6666665543
No 193
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.32 E-value=8.2e-12 Score=93.11 Aligned_cols=71 Identities=20% Similarity=0.290 Sum_probs=59.9
Q ss_pred cEEEEecCCC-----CCCHHHHHHHHHcCCCeEEEEEee------CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEE
Q 041602 2 SRVYVGNLDP-----RVSERDLEDEFRMFGVLRSVWVAR------RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVEL 68 (223)
Q Consensus 2 ttLfVgnLp~-----~~te~~L~~~F~~~G~I~~v~i~~------~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v 68 (223)
.+|+|.||.. +.++++|+++|++||+|..|.|+. +++|||||+|.+.++|++|++.|||.. |..|.+
T Consensus 9 ~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v 88 (105)
T 2pe8_A 9 KVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKA 88 (105)
T ss_dssp SEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEE
Confidence 4789999963 237899999999999999999974 348999999999999999999999998 777776
Q ss_pred eecc
Q 041602 69 SHNS 72 (223)
Q Consensus 69 ~~~~ 72 (223)
..+.
T Consensus 89 ~~a~ 92 (105)
T 2pe8_A 89 CFYN 92 (105)
T ss_dssp EECC
T ss_pred EEcC
Confidence 6653
No 194
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.32 E-value=5.5e-12 Score=101.62 Aligned_cols=71 Identities=27% Similarity=0.464 Sum_probs=61.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcC----C-------CeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEE
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMF----G-------VLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVEL 68 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~----G-------~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v 68 (223)
++|||+|||.++|+++|+++|++| | .|..+.+. .++|||||+|.+.++|++|+ .||+.. +..|.+
T Consensus 5 ~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v 82 (198)
T 2yh0_A 5 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKI 82 (198)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-TTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEE
T ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-CCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEE
Confidence 689999999999999999999999 5 67777664 56999999999999999999 799887 788888
Q ss_pred eeccCC
Q 041602 69 SHNSKG 74 (223)
Q Consensus 69 ~~~~~~ 74 (223)
.++...
T Consensus 83 ~~~~~~ 88 (198)
T 2yh0_A 83 RRPHDY 88 (198)
T ss_dssp ECCCCC
T ss_pred eCCCCC
Confidence 776443
No 195
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=9.9e-12 Score=93.04 Aligned_cols=73 Identities=27% Similarity=0.379 Sum_probs=60.5
Q ss_pred cEEEEecCCCCCC-----------HHHHHHHHHcCCCeEEEEEee-CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEE
Q 041602 2 SRVYVGNLDPRVS-----------ERDLEDEFRMFGVLRSVWVAR-RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVE 67 (223)
Q Consensus 2 ttLfVgnLp~~~t-----------e~~L~~~F~~~G~I~~v~i~~-~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~ 67 (223)
.+|+|.||....+ +++|+++|++||+|..|.|.. .++|||||+|.+.++|++|++.|||.. +..|.
T Consensus 16 ~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~ 95 (112)
T 2dit_A 16 RVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQIT 95 (112)
T ss_dssp CEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECE
T ss_pred eEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 4799999954332 689999999999999997742 468999999999999999999999987 77777
Q ss_pred EeeccCC
Q 041602 68 LSHNSKG 74 (223)
Q Consensus 68 v~~~~~~ 74 (223)
+..+.+.
T Consensus 96 v~~a~~~ 102 (112)
T 2dit_A 96 AQAWDGT 102 (112)
T ss_dssp EEECCSC
T ss_pred EEEeCCC
Confidence 7776543
No 196
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.31 E-value=4.1e-12 Score=109.08 Aligned_cols=71 Identities=20% Similarity=0.360 Sum_probs=64.1
Q ss_pred cEEEEecCCCC-CCHHHHHHHHHcCCCeEEEEEee------CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeecc
Q 041602 2 SRVYVGNLDPR-VSERDLEDEFRMFGVLRSVWVAR------RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNS 72 (223)
Q Consensus 2 ttLfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~------~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~ 72 (223)
++|||+|||.. +|+++|+++|++||+|..|.++. .++|||||+|.+.++|++|+ .|||.. +..|.+.++.
T Consensus 211 ~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~ 289 (292)
T 2ghp_A 211 REIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLAD 289 (292)
T ss_dssp TEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECC
T ss_pred ceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEec
Confidence 58999999999 99999999999999999999863 45799999999999999999 999987 7778877775
Q ss_pred C
Q 041602 73 K 73 (223)
Q Consensus 73 ~ 73 (223)
+
T Consensus 290 ~ 290 (292)
T 2ghp_A 290 K 290 (292)
T ss_dssp C
T ss_pred C
Confidence 4
No 197
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.29 E-value=7.7e-12 Score=107.35 Aligned_cols=69 Identities=26% Similarity=0.239 Sum_probs=61.2
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC---CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeec
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR---PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHN 71 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~---~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~ 71 (223)
++|||+|||.++|+++|+++|++||+|..|.|+.+ ++|||||+|.+.++|++|++ +++.. +..|.+..+
T Consensus 42 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 42 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHL 115 (292)
T ss_dssp CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEEC
Confidence 68999999999999999999999999999999763 47999999999999999995 88876 666666554
No 198
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.28 E-value=1.6e-12 Score=103.08 Aligned_cols=71 Identities=21% Similarity=0.384 Sum_probs=59.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEE----eeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWV----ARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSK 73 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i----~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~ 73 (223)
++|||+|||.++|+++|+++|++||.|..+.+ .+.++|||||+|.+.++|++|+ +||+.. +..|.+.++..
T Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~ 90 (175)
T 1fje_B 14 FNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKG 90 (175)
T ss_dssp EEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCCC
Confidence 58999999999999999999999986554222 2467999999999999999999 499887 77788877644
No 199
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.27 E-value=6.9e-12 Score=107.24 Aligned_cols=73 Identities=21% Similarity=0.247 Sum_probs=64.7
Q ss_pred cEEEEecCCCCC-CHHHHHHHHHcCCCeEEEEEeeC----CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeeccCC
Q 041602 2 SRVYVGNLDPRV-SERDLEDEFRMFGVLRSVWVARR----PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNSKG 74 (223)
Q Consensus 2 ttLfVgnLp~~~-te~~L~~~F~~~G~I~~v~i~~~----~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~~~ 74 (223)
++|||+|||..+ |+++|+++|++||.|..+.|+.+ ++|+|||+|.+.++|++|++.|||.. +..|.+.++.++
T Consensus 185 ~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 264 (284)
T 3smz_A 185 RCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPG 264 (284)
T ss_dssp SEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSS
T ss_pred cEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCC
Confidence 589999999995 99999999999999999998753 57899999999999999999999998 777777776554
No 200
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.24 E-value=1.1e-11 Score=105.47 Aligned_cols=71 Identities=28% Similarity=0.340 Sum_probs=59.9
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeC----CCCEEEEEEcCHHHHHHHHHHhCCCC------cEEEEEeec
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARR----PPGYAFVEFDDRRDAVDAIRALDGKN------GWRVELSHN 71 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~----~rGfaFV~F~~~e~A~~Al~~lng~~------g~~V~v~~~ 71 (223)
++|||+|||..+|+++|+++|++||+|..|.++.+ ++|||||+|.+.++|.+|++.||+.. +..|.+..+
T Consensus 97 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~ 176 (261)
T 3sde_A 97 AALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPM 176 (261)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEEC
T ss_pred CcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeec
Confidence 58999999999999999999999999999998753 57899999999999999999996432 444555544
Q ss_pred c
Q 041602 72 S 72 (223)
Q Consensus 72 ~ 72 (223)
.
T Consensus 177 ~ 177 (261)
T 3sde_A 177 E 177 (261)
T ss_dssp C
T ss_pred c
Confidence 3
No 201
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.21 E-value=5.6e-12 Score=93.77 Aligned_cols=66 Identities=20% Similarity=0.384 Sum_probs=53.0
Q ss_pred EecCCCCCCHHHHHHHH------------HcCCCeEEEEEeeC----CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEE
Q 041602 6 VGNLDPRVSERDLEDEF------------RMFGVLRSVWVARR----PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVE 67 (223)
Q Consensus 6 VgnLp~~~te~~L~~~F------------~~~G~I~~v~i~~~----~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~ 67 (223)
+.||+..+++++|+++| ++||+|..|.|+.+ ++|||||+|.+.++|++|++.|||.. |..|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 34566666777766666 99999999999753 58999999999999999999999997 76666
Q ss_pred Eeec
Q 041602 68 LSHN 71 (223)
Q Consensus 68 v~~~ 71 (223)
+..+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 6543
No 202
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.13 E-value=1.5e-10 Score=86.12 Aligned_cols=69 Identities=25% Similarity=0.360 Sum_probs=56.3
Q ss_pred EEEEecC--CCCCC--------HHHHHHHHHcCCCeEEEEEee-------CCCCEEEEEEcCHHHHHHHHHHhCCCC--c
Q 041602 3 RVYVGNL--DPRVS--------ERDLEDEFRMFGVLRSVWVAR-------RPPGYAFVEFDDRRDAVDAIRALDGKN--G 63 (223)
Q Consensus 3 tLfVgnL--p~~~t--------e~~L~~~F~~~G~I~~v~i~~-------~~rGfaFV~F~~~e~A~~Al~~lng~~--g 63 (223)
.|.+.|+ |.++. +++|+++|++||+|.+|.|+. .++|||||+|.+.++|++|+++|||.. +
T Consensus 7 vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~G 86 (105)
T 3v4m_A 7 VLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFAN 86 (105)
T ss_dssp EEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred EEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 4667787 22332 368999999999999999974 257999999999999999999999998 7
Q ss_pred EEEEEeec
Q 041602 64 WRVELSHN 71 (223)
Q Consensus 64 ~~V~v~~~ 71 (223)
..|.+...
T Consensus 87 R~i~v~~~ 94 (105)
T 3v4m_A 87 RVVVTKYC 94 (105)
T ss_dssp EECEEEEE
T ss_pred CEEEEEEe
Confidence 77666654
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.05 E-value=5.7e-10 Score=84.85 Aligned_cols=70 Identities=24% Similarity=0.330 Sum_probs=57.2
Q ss_pred cEEEEecCCC--CC---CHHHHHHHHHcCCCeEEEEEeeC---------CCCEEEEEEcCHHHHHHHHHHhCCCC--cEE
Q 041602 2 SRVYVGNLDP--RV---SERDLEDEFRMFGVLRSVWVARR---------PPGYAFVEFDDRRDAVDAIRALDGKN--GWR 65 (223)
Q Consensus 2 ttLfVgnLp~--~~---te~~L~~~F~~~G~I~~v~i~~~---------~rGfaFV~F~~~e~A~~Al~~lng~~--g~~ 65 (223)
..|++.|+-. ++ -++||++.|++||+|.+|.|+.+ .+||+||+|.+.++|++|++.|||.. ++.
T Consensus 21 ~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~ 100 (118)
T 3ue2_A 21 TVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK 100 (118)
T ss_dssp CEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3678888842 22 36899999999999999998753 24899999999999999999999998 766
Q ss_pred EEEeec
Q 041602 66 VELSHN 71 (223)
Q Consensus 66 V~v~~~ 71 (223)
|.+...
T Consensus 101 i~v~~~ 106 (118)
T 3ue2_A 101 VVAEVY 106 (118)
T ss_dssp CEEEEE
T ss_pred EEEEEc
Confidence 666654
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.01 E-value=5.2e-10 Score=84.61 Aligned_cols=57 Identities=21% Similarity=0.346 Sum_probs=49.8
Q ss_pred HHHHHHHHHcCCCeEEEEEeeC-CCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeec
Q 041602 15 ERDLEDEFRMFGVLRSVWVARR-PPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHN 71 (223)
Q Consensus 15 e~~L~~~F~~~G~I~~v~i~~~-~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~ 71 (223)
++||+++|++||+|.+|.|..+ ++|||||+|.+.++|++|++.|||.. |..|.+...
T Consensus 31 ~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~ 90 (114)
T 3s6e_A 31 KDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYV 90 (114)
T ss_dssp HHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred HHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEE
Confidence 3588999999999999999764 48999999999999999999999998 766666655
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=3e-09 Score=81.36 Aligned_cols=59 Identities=12% Similarity=0.144 Sum_probs=52.7
Q ss_pred cEEEEecCCCC-CCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcC-HHHHHHHHHHhCCC
Q 041602 2 SRVYVGNLDPR-VSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDD-RRDAVDAIRALDGK 61 (223)
Q Consensus 2 ttLfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~-~e~A~~Al~~lng~ 61 (223)
+-|||+||+.+ +++++|+++|++||+|..|.++.. .-.|||.|.+ .++|++|++++|..
T Consensus 19 ~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g-~~tgfVrf~~~~~~A~~av~~ln~~ 79 (121)
T 1owx_A 19 CLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG-AKEGIILFKEKAKEALGKAKDANNG 79 (121)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT-CSEEEEEESSCHHHHHHHHHHTTTS
T ss_pred eEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC-CCEEEEEECCChHHHHHHHHHhhcC
Confidence 46899999999 999999999999999999999755 3389999999 89999999999633
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.75 E-value=3.2e-08 Score=71.75 Aligned_cols=69 Identities=19% Similarity=0.328 Sum_probs=55.5
Q ss_pred cEEEEecCCC----CCCH----HHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeec
Q 041602 2 SRVYVGNLDP----RVSE----RDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHN 71 (223)
Q Consensus 2 ttLfVgnLp~----~~te----~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~ 71 (223)
.||+|.-++. +.-. .+|.+.|++||+|..++++. +.+||+|.+.++|.+|++ |||.+ ++.++|..+
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~---d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lk 83 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE---DKMWVTFLEGSSALNVLS-LNGKELLNRTITIALK 83 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS---SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEEC
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec---CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeC
Confidence 3778876652 2323 57999999999999999984 459999999999999998 99998 777777776
Q ss_pred cCC
Q 041602 72 SKG 74 (223)
Q Consensus 72 ~~~ 74 (223)
.+.
T Consensus 84 t~d 86 (91)
T 2dnr_A 84 SPS 86 (91)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.45 E-value=5e-07 Score=65.85 Aligned_cols=67 Identities=25% Similarity=0.408 Sum_probs=54.4
Q ss_pred cEEEEecCCCC-----C-CH---HHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEee
Q 041602 2 SRVYVGNLDPR-----V-SE---RDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSH 70 (223)
Q Consensus 2 ttLfVgnLp~~-----~-te---~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~ 70 (223)
.||+|.-++.. + .+ .+|.+.|++||+|..++++.+ -+||+|.+.++|.+||+ |||.+ ++.+++..
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d---~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~ 91 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG---QMLVTFADSHSALSVLD-VDGMKVKGRAVKISG 91 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT---EEEEECSCSHHHHHHHH-GGGSEETTEEEEEEC
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC---cEEEEEcChHHHHHHHh-cCCeeeCCeEEEEec
Confidence 47888877643 2 21 468999999999999999854 49999999999999998 99998 78887776
Q ss_pred cc
Q 041602 71 NS 72 (223)
Q Consensus 71 ~~ 72 (223)
..
T Consensus 92 k~ 93 (95)
T 1ufw_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.35 E-value=6e-07 Score=74.15 Aligned_cols=58 Identities=28% Similarity=0.359 Sum_probs=49.0
Q ss_pred CHHHHHHHHHcCCCeEEEEEee---------CCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeec
Q 041602 14 SERDLEDEFRMFGVLRSVWVAR---------RPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHN 71 (223)
Q Consensus 14 te~~L~~~F~~~G~I~~v~i~~---------~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~ 71 (223)
.+++|.+.|++||+|..+.|+. .++|++||+|.+.++|++|++.|||.. |+.|.+...
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~ 210 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY 210 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEc
Confidence 4678999999999999999862 347899999999999999999999998 655555543
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.00035 Score=52.14 Aligned_cols=67 Identities=16% Similarity=0.151 Sum_probs=58.2
Q ss_pred EEEEecCCCCCCHHHHHHHHHcC-----CCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEee
Q 041602 3 RVYVGNLDPRVSERDLEDEFRMF-----GVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSH 70 (223)
Q Consensus 3 tLfVgnLp~~~te~~L~~~F~~~-----G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~ 70 (223)
+|-+-|||..++...|+.+.+.+ |.|+.+.+.-+ .+-|+|+|.+...|.+|.-+|+|.+ +.++.+..
T Consensus 23 tiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 23 LICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred EEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-CCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 56678999999999999999999 99999988766 4579999999999999988899998 66666553
No 210
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.25 E-value=0.0017 Score=46.75 Aligned_cols=62 Identities=16% Similarity=0.263 Sum_probs=52.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEee-C------CCCEEEEEEcCHHHHHHHHHHhCCCC
Q 041602 1 MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVAR-R------PPGYAFVEFDDRRDAVDAIRALDGKN 62 (223)
Q Consensus 1 ~ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-~------~rGfaFV~F~~~e~A~~Al~~lng~~ 62 (223)
|++|-|.+||+.+||+++.+.+....++.....+. + .-.-|+|.|.+.+++.+-.+.++|..
T Consensus 1 ~~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~ 69 (91)
T 1uw4_A 1 LSKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYV 69 (91)
T ss_dssp CCEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCE
T ss_pred CcEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcE
Confidence 68999999999999999999999888776665542 1 13579999999999999999999875
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.24 E-value=0.0026 Score=46.77 Aligned_cols=53 Identities=23% Similarity=0.147 Sum_probs=46.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHHc---C--CCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHH
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRM---F--GVLRSVWVARRPPGYAFVEFDDRRDAVDAIRA 57 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~---~--G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~ 57 (223)
++|.|.|||+.+.++.|+-+|++ - |+|..+.... +-|+|+|.+.+.|+..++.
T Consensus 9 ~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 9 VAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHTC
T ss_pred cEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhcC
Confidence 57999999999999999999987 2 5899988763 7899999999999999875
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.81 E-value=0.0037 Score=45.56 Aligned_cols=53 Identities=19% Similarity=0.192 Sum_probs=43.4
Q ss_pred EEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhC
Q 041602 4 VYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALD 59 (223)
Q Consensus 4 LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~ln 59 (223)
||+-++|.++...||+++|+.||.| .|..+. .--|||.|.+++.|..|+..+.
T Consensus 18 Vf~l~FP~ewKt~DI~~lFs~fggv-~I~Wid--DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 18 VLHVTFPKEWKTSDLYQLFSAFGNI-QISWID--DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEEECCTTCCHHHHHHHHTTTCSC-CCEEEE--TTEEEEECSCHHHHHHHHHHHH
T ss_pred EEEEeCChhhhhHHHHHHhhccCCE-EEEEEc--CCeEEEEecCHHHHHHHHHhcc
Confidence 4444999999999999999999943 344443 3489999999999999999774
No 213
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.81 E-value=0.0032 Score=46.04 Aligned_cols=53 Identities=19% Similarity=0.161 Sum_probs=43.8
Q ss_pred EEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhC
Q 041602 4 VYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALD 59 (223)
Q Consensus 4 LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~ln 59 (223)
||+-++|.++...||.++|+.||. ..|..+.+ .-|||.|.+++.|..|+..+.
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~fgg-v~I~WidD--TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSAFGN-IQISWIDD--TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTTSEE-EEEEEEET--TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEEeCChhhhhHHHHHHHhccCC-EEEEEEcC--CeEEEEecCHHHHHHHHHhcc
Confidence 444499999999999999999993 34555543 489999999999999999774
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.53 E-value=0.014 Score=44.02 Aligned_cols=65 Identities=12% Similarity=0.183 Sum_probs=50.4
Q ss_pred EEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC---cEEEEEee
Q 041602 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN---GWRVELSH 70 (223)
Q Consensus 3 tLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~---g~~V~v~~ 70 (223)
-|-|-+.|+.. .+.|..+|++||+|.+.... ....+-.|.|+++.+|++||. .||.. .+.|-+..
T Consensus 26 wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~-~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 26 WVTVFGFPQAS-ASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp EEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC-SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred EEEEECCCHHH-HHHHHHHHHhhCcEEEeccC-CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 46778888774 67788899999999988763 335799999999999999997 57765 35555554
No 215
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.52 E-value=0.0045 Score=45.62 Aligned_cols=70 Identities=20% Similarity=0.182 Sum_probs=55.6
Q ss_pred cEEEEecCCCCC-CH----HHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC--cEEEEEeecc
Q 041602 2 SRVYVGNLDPRV-SE----RDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN--GWRVELSHNS 72 (223)
Q Consensus 2 ttLfVgnLp~~~-te----~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~--g~~V~v~~~~ 72 (223)
++|+|.||+.++ +. +.++++|.+|+++......+ +-.-..|.|.++++|.+|-..|++.. |..+++..++
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk-SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK-SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET-TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC-cceEEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 789999998865 22 57799999999887766553 33467999999999999999999987 6666666664
No 216
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.20 E-value=0.0025 Score=58.61 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=41.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHH
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIR 56 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~ 56 (223)
.+|+|. .|..+++++|.+.|++||+|.++.+-.+..-||.|+|.+.+++++++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 368996 799999999999999999999998865545699999999999997764
No 217
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=95.06 E-value=0.0021 Score=50.29 Aligned_cols=89 Identities=25% Similarity=0.369 Sum_probs=45.6
Q ss_pred HHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcC--------HHHHHHHHHHh--CCC----CcEEEEEeeccCCC------
Q 041602 16 RDLEDEFRMFGVLRSVWVARRPPGYAFVEFDD--------RRDAVDAIRAL--DGK----NGWRVELSHNSKGG------ 75 (223)
Q Consensus 16 ~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~--------~e~A~~Al~~l--ng~----~g~~V~v~~~~~~~------ 75 (223)
+|+.++|...|.|+.... .+||+||+-++ .+|+---+.++ .+. ++..|++.......
T Consensus 2 ~~~~~l~~~~G~Vkwfn~---~kGfGFI~~~~~~g~p~~~g~DvFvH~s~i~~~g~~~l~eG~~V~f~~~~g~kG~~A~~ 78 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV---RMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSAKGLESIR 78 (148)
T ss_dssp ----CCEEEEEEEEEEET---TTTEEEEEEEEETTEEEEEEEEEEEEGGGBCSSSSCCCCTTCEEEEEEEEETTEEEEEE
T ss_pred CcccccccceeEEEEEEC---CCCeeEEeeCccccccCCCCccEEEEhHHhcccCCccCCCCCEEEEEEEEccccchhhc
Confidence 456667777777766543 48999999763 12211111122 221 14455544432210
Q ss_pred ------CCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCC
Q 041602 76 ------GGRGGRGRGGGEDLKCYECGEPGHFARECRLR 107 (223)
Q Consensus 76 ------r~~~~~~~~~~~~~~~~~~g~~G~~~r~~~~~ 107 (223)
..-.+..+.......|+.|+..||.+++|+..
T Consensus 79 V~~pgg~pv~GS~rrp~~~~~C~~Cg~~GH~a~~C~~~ 116 (148)
T 3ts2_A 79 VTGPGGVFCIGSERRPKGGDRCYNCGGLDHHAKECKLP 116 (148)
T ss_dssp EESGGGCCCCCCTTSCCCSCCCTTTCCSSCCGGGCCSC
T ss_pred ccccCCccccccccccCCCCcccEeCCccchhhhCCCC
Confidence 00001112233356799999999999999864
No 218
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.71 E-value=0.046 Score=39.67 Aligned_cols=60 Identities=18% Similarity=0.234 Sum_probs=44.4
Q ss_pred EEEEecCCCCCCHHHHHHHHHcCCCeEEEEEe-e------CCCCEEEEEEcCHHHHHHHHHHhCCCC
Q 041602 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSVWVA-R------RPPGYAFVEFDDRRDAVDAIRALDGKN 62 (223)
Q Consensus 3 tLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~-~------~~rGfaFV~F~~~e~A~~Al~~lng~~ 62 (223)
+|-|..||+.+||+++.+.++..=++.....+ + ..-.-|||.|.+.+++..-.+..+|..
T Consensus 11 KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~ 77 (97)
T 2l08_A 11 MVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYI 77 (97)
T ss_dssp CEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEE
T ss_pred eEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcE
Confidence 68899999999999987766654343322222 1 113478999999999999999998774
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=93.47 E-value=0.041 Score=42.09 Aligned_cols=26 Identities=15% Similarity=0.083 Sum_probs=23.1
Q ss_pred CCCCEEEEEEcCHHHHHHHHHHhCCC
Q 041602 36 RPPGYAFVEFDDRRDAVDAIRALDGK 61 (223)
Q Consensus 36 ~~rGfaFV~F~~~e~A~~Al~~lng~ 61 (223)
..+|||||+|.+.++|++|++.+++.
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhccc
Confidence 46899999999999999999988754
No 220
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=92.95 E-value=0.17 Score=32.89 Aligned_cols=28 Identities=32% Similarity=0.666 Sum_probs=22.9
Q ss_pred CCCCCCCCCCCcCCCCCCCCCCCCCCCC
Q 041602 81 RGRGGGEDLKCYECGEPGHFARECRLRI 108 (223)
Q Consensus 81 ~~~~~~~~~~~~~~g~~G~~~r~~~~~~ 108 (223)
.++.......|+.||..|||.++|+...
T Consensus 16 ~~~~~~~~~~C~~Cge~GH~ardCp~~~ 43 (56)
T 1u6p_A 16 RRRSQLDRDQCAYCKEKGHWAKDCPKKP 43 (56)
T ss_dssp CCSTTCCTTBCSSSCCBSSCGGGCTTCC
T ss_pred cCCCCCCCCcceeCCCCCcccccCcCCc
Confidence 3445566788999999999999998863
No 221
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=91.80 E-value=0.4 Score=28.91 Aligned_cols=25 Identities=28% Similarity=0.634 Sum_probs=21.2
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCCCC
Q 041602 84 GGGEDLKCYECGEPGHFARECRLRI 108 (223)
Q Consensus 84 ~~~~~~~~~~~g~~G~~~r~~~~~~ 108 (223)
.......|+.|+..|||+++|+...
T Consensus 6 ~~~~~~~C~~Cgk~GH~ardCP~~~ 30 (40)
T 1a6b_B 6 SQLDRDQCAYCKEKGHWAKDCPKKP 30 (40)
T ss_dssp CSCCSSSCSSSCCTTCCTTSCSSSC
T ss_pred CCCCCCeeeECCCCCcchhhCcCCc
Confidence 3456788999999999999999864
No 222
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.30 E-value=0.65 Score=42.92 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=45.6
Q ss_pred EEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCCcEE
Q 041602 4 VYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKNGWR 65 (223)
Q Consensus 4 LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~g~~ 65 (223)
++|+ +|..+...+|.++|+.||.| .|..+. ...|||.|.+.+.|..++++++.....+
T Consensus 443 l~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid--dt~a~V~~~~~~~a~~~l~~~~~~~~~~ 500 (507)
T 3d45_A 443 LHVT-FPKEWKTSDLYQLFSAFGNI-QISWID--DTSAFVSLSQPEQVQIAVNTSKYAESYR 500 (507)
T ss_dssp EEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS--SSEEEEECSCHHHHHHHHHHHTTCSSCE
T ss_pred EEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc--CCeEEEEECCHHHHHHHHHHHHhCCceE
Confidence 4554 88899999999999999964 444443 4579999999999999999996544333
No 223
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=90.67 E-value=0.21 Score=38.08 Aligned_cols=65 Identities=20% Similarity=0.284 Sum_probs=44.7
Q ss_pred EEEEecCCCCCCHHHHHHHHHcCCCeEE-EEEee------------------CCCCEEEEEEcCHHHHHHHHHHhCCCC-
Q 041602 3 RVYVGNLDPRVSERDLEDEFRMFGVLRS-VWVAR------------------RPPGYAFVEFDDRRDAVDAIRALDGKN- 62 (223)
Q Consensus 3 tLfVgnLp~~~te~~L~~~F~~~G~I~~-v~i~~------------------~~rGfaFV~F~~~e~A~~Al~~lng~~- 62 (223)
-|.|-+.|+.. ...+-+.|++||.|.+ +.+.. .......|+|+++.+|++||. .||..
T Consensus 9 ~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ii 86 (132)
T 3p3d_A 9 AILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAVF 86 (132)
T ss_dssp EEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCEE
T ss_pred EEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeEe
Confidence 46677887554 4566689999999866 21110 124578999999999999996 66665
Q ss_pred -cEEEEEe
Q 041602 63 -GWRVELS 69 (223)
Q Consensus 63 -g~~V~v~ 69 (223)
+.-|-+.
T Consensus 87 ~G~mIGV~ 94 (132)
T 3p3d_A 87 NGVLLGVI 94 (132)
T ss_dssp TTEECEEE
T ss_pred CcEEEEEE
Confidence 5444443
No 224
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=86.90 E-value=0.21 Score=37.88 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=29.5
Q ss_pred CCCCEEEEEEcCHHHHHHHHHHh-CCCC--cEEEEEeec
Q 041602 36 RPPGYAFVEFDDRRDAVDAIRAL-DGKN--GWRVELSHN 71 (223)
Q Consensus 36 ~~rGfaFV~F~~~e~A~~Al~~l-ng~~--g~~V~v~~~ 71 (223)
+.+|+++|+|.+.++|++|++.| |+.. + .+.+..+
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a 48 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDA 48 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETT
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccc
Confidence 45899999999999999999999 8776 6 6666655
No 225
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=85.67 E-value=0.54 Score=25.38 Aligned_cols=19 Identities=37% Similarity=1.132 Sum_probs=16.9
Q ss_pred CCCcCCCCCCCCCCCCCCC
Q 041602 89 LKCYECGEPGHFARECRLR 107 (223)
Q Consensus 89 ~~~~~~g~~G~~~r~~~~~ 107 (223)
..|+.||..||++++|+..
T Consensus 3 ~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC
T ss_pred CeeEeCCCCCcccccCCCc
Confidence 5699999999999999875
No 226
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.38 E-value=3.1 Score=26.72 Aligned_cols=21 Identities=33% Similarity=1.179 Sum_probs=17.9
Q ss_pred CCCCCcCCCCCCCCCCCCCCC
Q 041602 87 EDLKCYECGEPGHFARECRLR 107 (223)
Q Consensus 87 ~~~~~~~~g~~G~~~r~~~~~ 107 (223)
....|+.||..|||.++|+..
T Consensus 6 ~~~~C~kCGk~GH~~k~Cp~~ 26 (55)
T 2ysa_A 6 SGYTCFRCGKPGHYIKNCPTN 26 (55)
T ss_dssp SSCCCTTTCCTTSCGGGCSGG
T ss_pred CCCccccCCCcCcccccCCCC
Confidence 455799999999999999854
No 227
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=66.93 E-value=23 Score=24.60 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=41.0
Q ss_pred EEEEecCCCCCCHHHHHHHHHc-CC-CeEEEEEeeCCCC--EEEEEEcCHHHHHHHHH
Q 041602 3 RVYVGNLDPRVSERDLEDEFRM-FG-VLRSVWVARRPPG--YAFVEFDDRRDAVDAIR 56 (223)
Q Consensus 3 tLfVgnLp~~~te~~L~~~F~~-~G-~I~~v~i~~~~rG--faFV~F~~~e~A~~Al~ 56 (223)
+.|+-.++...|..+|++.+++ |+ +|..|.....+.| -|+|......+|.+...
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 3567778889999999999987 77 7777766544444 59999998877776544
No 228
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=62.86 E-value=6.9 Score=21.33 Aligned_cols=20 Identities=45% Similarity=1.175 Sum_probs=17.0
Q ss_pred CCCCcCCCCCCCCCCCCCCC
Q 041602 88 DLKCYECGEPGHFARECRLR 107 (223)
Q Consensus 88 ~~~~~~~g~~G~~~r~~~~~ 107 (223)
...|+.||..||+.++|+..
T Consensus 6 ~~~C~nCgk~GH~ar~C~~p 25 (29)
T 1nc8_A 6 VIRCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp CCBCTTTSCBSSCGGGCCSS
T ss_pred CCEEEECCccccCHhHCccc
Confidence 35699999999999999764
No 229
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=62.44 E-value=3.4 Score=27.29 Aligned_cols=22 Identities=36% Similarity=0.893 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhcCc
Q 041602 192 NLFSIFLVLYCIQLYLSSILLGG 214 (223)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~ 214 (223)
.||.+||++ ..|+|=+|+||-|
T Consensus 35 ~Lf~vFl~i-iLeIYNsSvlLdg 56 (65)
T 3arc_H 35 GLFLVFLLI-ILEIYNSTLILDG 56 (65)
T ss_dssp HHHHHHHHH-HHHHHTTSSCCTT
T ss_pred HHHHHHHHH-HHHHhCcceeecC
Confidence 455666554 4699999999866
No 230
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=60.23 E-value=23 Score=24.62 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=31.4
Q ss_pred HHHHHHcCC-CeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCC
Q 041602 18 LEDEFRMFG-VLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGK 61 (223)
Q Consensus 18 L~~~F~~~G-~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~ 61 (223)
|++.....| +|..+.++..-+||-||+++..++...+++...+.
T Consensus 29 L~~~~~~~~l~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 29 MASRAEKEQLDVYSILASESLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp HHHHHHHTTCCEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred HHHHHHhcCCcEEEEEEecccCCEEEEEEecchhHHHHHHCCCCc
Confidence 333333334 57777776667999999999999888888766554
No 231
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=58.67 E-value=46 Score=23.62 Aligned_cols=57 Identities=16% Similarity=0.128 Sum_probs=45.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCC
Q 041602 2 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGK 61 (223)
Q Consensus 2 ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~ 61 (223)
|-|-+-|+|..+-..++--.....|---.|+.+ .|-|.|.|.+.++..-|+..|-+.
T Consensus 13 clikiinipqgtlkaevvlavrhlgyefycdyi---dgqamirfqnsdeqrlaiqkllnh 69 (129)
T 4eyt_A 13 CLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI---DGQAMIRFQNSDEQRLAIQKLLNH 69 (129)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC---SSCEEEEESSHHHHHHHHHHHEET
T ss_pred cEEEEEecCCCceeeeeEEeehhcCeeEeeeee---cCeeEEEecCChHHHHHHHHHHhc
Confidence 345677999999888887777777866677666 688999999999999999876433
No 232
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=56.80 E-value=30 Score=30.91 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=12.3
Q ss_pred EcCHHHHHHHHHHhCCCCcEEE
Q 041602 45 FDDRRDAVDAIRALDGKNGWRV 66 (223)
Q Consensus 45 F~~~e~A~~Al~~lng~~g~~V 66 (223)
|.+-++.+.|..++....+..|
T Consensus 148 FV~F~~~e~A~~Ai~~lng~~i 169 (437)
T 3pgw_S 148 FIEYEHERDMHSAYKHADGKKI 169 (437)
T ss_pred EEeeccHHHHHHHHHHcCCCEE
Confidence 4445556666666665555544
No 233
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=49.06 E-value=17 Score=23.03 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=19.0
Q ss_pred CCCCCcCCCCCCCCCCCCCCCCC
Q 041602 87 EDLKCYECGEPGHFARECRLRIG 109 (223)
Q Consensus 87 ~~~~~~~~g~~G~~~r~~~~~~~ 109 (223)
....|+.|+..||++++|+....
T Consensus 29 ~~~~C~~Cg~~GH~ar~C~~~~~ 51 (60)
T 1cl4_A 29 VPGLCPRCKRGKHWANECKSKTD 51 (60)
T ss_dssp CCCSCSSCSSCSSCSTTCCCTTS
T ss_pred CCcceeECCCCCCccCcCCCccc
Confidence 35679999999999999987643
No 234
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=48.73 E-value=8.9 Score=24.64 Aligned_cols=22 Identities=41% Similarity=0.806 Sum_probs=15.9
Q ss_pred CCCCcCCCCCCCCCCCCCCCCC
Q 041602 88 DLKCYECGEPGHFARECRLRIG 109 (223)
Q Consensus 88 ~~~~~~~g~~G~~~r~~~~~~~ 109 (223)
...|+.|+..||++++|+....
T Consensus 30 ~~~C~~Cg~~GH~ar~C~~~~~ 51 (61)
T 2ihx_A 30 RERCQLCNGMGHNAKQCRKRDG 51 (61)
T ss_dssp CSBCTTTCCBSSCGGGCCCCC-
T ss_pred CCeeCCCCCCCCCcCCCcCCCc
Confidence 3568888888888888876643
No 235
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=47.38 E-value=50 Score=20.71 Aligned_cols=54 Identities=9% Similarity=-0.000 Sum_probs=40.2
Q ss_pred EEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHh
Q 041602 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRAL 58 (223)
Q Consensus 3 tLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~l 58 (223)
++.|.|+.-.-....++..+.+ ..|..+.+... .+-+.|+|.+.++..++++.+
T Consensus 8 ~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~-~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 8 VLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN-EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS-EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc-CCEEEEEECCHHHHHHHHHHc
Confidence 5778888887788999999999 88888777422 346778887666777777643
No 236
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=45.03 E-value=57 Score=24.83 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=39.3
Q ss_pred EEEEecCCCCCCHHHHHHHHHc-CC-CeEEEEEeeCCCC--EEEEEEcCHHHHHHHHH
Q 041602 3 RVYVGNLDPRVSERDLEDEFRM-FG-VLRSVWVARRPPG--YAFVEFDDRRDAVDAIR 56 (223)
Q Consensus 3 tLfVgnLp~~~te~~L~~~F~~-~G-~I~~v~i~~~~rG--faFV~F~~~e~A~~Al~ 56 (223)
+.||.-++...|..+|++.+++ |+ +|..|..+..+.| -|||......+|.+...
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 137 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIAN 137 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHH
Confidence 3567778889999999998876 66 7777766544444 59999987766665433
No 237
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=44.85 E-value=41 Score=23.28 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=37.6
Q ss_pred EEEEecCCCCCCHHHHHHHHHc-CC-CeEEEEEeeCCCC--EEEEEEcCHHHHHH
Q 041602 3 RVYVGNLDPRVSERDLEDEFRM-FG-VLRSVWVARRPPG--YAFVEFDDRRDAVD 53 (223)
Q Consensus 3 tLfVgnLp~~~te~~L~~~F~~-~G-~I~~v~i~~~~rG--faFV~F~~~e~A~~ 53 (223)
+-|+-.++..+|..+|++.+++ |+ +|..|.....+++ -|+|......+|.+
T Consensus 23 n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid 77 (85)
T 1vq8_S 23 NKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQE 77 (85)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHH
Confidence 3467778889999999999986 67 7777766544444 58999987766444
No 238
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=44.55 E-value=17 Score=26.19 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=29.2
Q ss_pred CeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCC
Q 041602 27 VLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGK 61 (223)
Q Consensus 27 ~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~ 61 (223)
+|.++..+..-+||-||+=.+..++.+|++.+.+.
T Consensus 40 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEECTTCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEecCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 57787777677999999999999999998866544
No 239
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=43.40 E-value=60 Score=24.98 Aligned_cols=54 Identities=17% Similarity=0.286 Sum_probs=39.3
Q ss_pred EEEEecCCCCCCHHHHHHHHHc-CC-CeEEEEEeeCCCC--EEEEEEcCHHHHHHHHH
Q 041602 3 RVYVGNLDPRVSERDLEDEFRM-FG-VLRSVWVARRPPG--YAFVEFDDRRDAVDAIR 56 (223)
Q Consensus 3 tLfVgnLp~~~te~~L~~~F~~-~G-~I~~v~i~~~~rG--faFV~F~~~e~A~~Al~ 56 (223)
+.||.-++...|..+|++.+++ |+ +|..|..+..+.| -|||......+|.+...
T Consensus 88 N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAn 145 (150)
T 4a17_R 88 NTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLAN 145 (150)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHH
Confidence 3567778889999999998876 66 7777766544444 59999987767666443
No 240
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.96 E-value=22 Score=22.92 Aligned_cols=19 Identities=47% Similarity=1.172 Sum_probs=12.7
Q ss_pred CCCCcCCCCCCCCCCCCCC
Q 041602 88 DLKCYECGEPGHFARECRL 106 (223)
Q Consensus 88 ~~~~~~~g~~G~~~r~~~~ 106 (223)
...||.|+..||..++|+.
T Consensus 7 ~~~C~~Cg~~GH~a~~C~~ 25 (63)
T 2cqf_A 7 GDRCYNCGGLDHHAKECKL 25 (63)
T ss_dssp CCCCSSSCCSSSCTTTCCS
T ss_pred CCcccccCCCCcChhhCCC
Confidence 3457777777777777764
No 241
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=40.95 E-value=13 Score=25.72 Aligned_cols=21 Identities=38% Similarity=1.138 Sum_probs=18.4
Q ss_pred CCCCcCCCCCCCCCCCCCCCC
Q 041602 88 DLKCYECGEPGHFARECRLRI 108 (223)
Q Consensus 88 ~~~~~~~g~~G~~~r~~~~~~ 108 (223)
...||.||..||+.++|+..+
T Consensus 46 ~~~CYnCG~~GH~~rdC~~~r 66 (83)
T 3nyb_B 46 TIYCYNCGGKGHFGDDCKEKR 66 (83)
T ss_dssp CCBCSSSSCBSSCGGGCSSCC
T ss_pred CCeecccCCCCcCcccCCccc
Confidence 467999999999999998763
No 242
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=38.91 E-value=36 Score=22.79 Aligned_cols=23 Identities=39% Similarity=0.964 Sum_probs=18.0
Q ss_pred CCCCCCCcCCCCCCCCCCCCCCC
Q 041602 85 GGEDLKCYECGEPGHFARECRLR 107 (223)
Q Consensus 85 ~~~~~~~~~~g~~G~~~r~~~~~ 107 (223)
......||.|+..||+.++|+..
T Consensus 21 ~~r~~~C~~Cg~~GH~a~~C~~~ 43 (74)
T 2li8_A 21 RSKGDRCYNCGGLDHHAKECKLP 43 (74)
T ss_dssp CSTTSCCTTTCCSSSCTTTCSSC
T ss_pred cCCCCcccccCCcCcCcccCCCC
Confidence 34556799999999999998753
No 243
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=36.12 E-value=26 Score=20.10 Aligned_cols=17 Identities=29% Similarity=0.817 Sum_probs=12.7
Q ss_pred CCCcCCCCCCCCCCCCC
Q 041602 89 LKCYECGEPGHFARECR 105 (223)
Q Consensus 89 ~~~~~~g~~G~~~r~~~ 105 (223)
..|+.++..||..++++
T Consensus 22 ~~C~~Cg~~GH~~~~C~ 38 (39)
T 2a51_A 22 EGCWNCGSKEHRFAQCP 38 (39)
T ss_dssp SSCTTTCCSSSCTTTSC
T ss_pred CccccCCCCCCccCcCc
Confidence 46777888888877765
No 244
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=35.38 E-value=1e+02 Score=24.22 Aligned_cols=54 Identities=26% Similarity=0.297 Sum_probs=36.5
Q ss_pred EEEEecCCC-C--------CCHHHHHHHH--HcCCCeEEEEEee--CCCCEEEEEEcC-HHHHHHHHH
Q 041602 3 RVYVGNLDP-R--------VSERDLEDEF--RMFGVLRSVWVAR--RPPGYAFVEFDD-RRDAVDAIR 56 (223)
Q Consensus 3 tLfVgnLp~-~--------~te~~L~~~F--~~~G~I~~v~i~~--~~rGfaFV~F~~-~e~A~~Al~ 56 (223)
++.|-|+|. . ...++|.+.| +.|.+++-.-+-. .+.|+|.|+|.. ..-..+|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 456778886 2 3347899977 8998876444432 346799999994 555666654
No 245
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=34.30 E-value=97 Score=23.92 Aligned_cols=51 Identities=22% Similarity=0.345 Sum_probs=37.2
Q ss_pred EEEecCCCCCCHHHHHHHHHc-CC-CeEEEEEeeCCCC--EEEEEEcCHHHHHHH
Q 041602 4 VYVGNLDPRVSERDLEDEFRM-FG-VLRSVWVARRPPG--YAFVEFDDRRDAVDA 54 (223)
Q Consensus 4 LfVgnLp~~~te~~L~~~F~~-~G-~I~~v~i~~~~rG--faFV~F~~~e~A~~A 54 (223)
.|+--++...|..+|++.+++ |+ +|..|..+..+.| -|+|......+|.+.
T Consensus 95 ~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~ 149 (156)
T 2zkr_s 95 TLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDV 149 (156)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHH
Confidence 467778889999999999976 67 7777765543333 589999877665444
No 246
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=34.24 E-value=30 Score=21.01 Aligned_cols=20 Identities=45% Similarity=1.175 Sum_probs=14.3
Q ss_pred CCCCcCCCCCCCCCCCCCCC
Q 041602 88 DLKCYECGEPGHFARECRLR 107 (223)
Q Consensus 88 ~~~~~~~g~~G~~~r~~~~~ 107 (223)
...|+.|+..||+.++++..
T Consensus 6 ~~~C~~Cg~~GH~a~~C~~~ 25 (49)
T 2ec7_A 6 VIRCWNCGKEGHSARQCRAP 25 (49)
T ss_dssp CCBCTTTCCBTCCTTTCCCS
T ss_pred cCeeeecCCCCcChhhCcCC
Confidence 35677788888887777653
No 247
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=30.68 E-value=1.1e+02 Score=19.71 Aligned_cols=56 Identities=7% Similarity=0.223 Sum_probs=34.9
Q ss_pred EEEEec-CCCCCCHHHHHHHHHcCC-----CeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC
Q 041602 3 RVYVGN-LDPRVSERDLEDEFRMFG-----VLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN 62 (223)
Q Consensus 3 tLfVgn-Lp~~~te~~L~~~F~~~G-----~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~ 62 (223)
++|+.. =...++..+|-.++..-+ .|-.|.+. ..|.||+-.. +.++++++.|++..
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~---d~~s~v~v~~-~~~~~~~~~l~~~~ 63 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM---DNASYVEILN-GKGPHVLKVMKNTT 63 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC---SSCEEEEECT-TCHHHHHHHHTTCC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe---CCcEEEEECH-HHHHHHHHHhcccc
Confidence 567732 223477778877776544 45566664 5689999886 45777888887654
No 248
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=27.95 E-value=36 Score=21.02 Aligned_cols=18 Identities=50% Similarity=1.403 Sum_probs=10.3
Q ss_pred CCCcCCCCCCCCCCCCCC
Q 041602 89 LKCYECGEPGHFARECRL 106 (223)
Q Consensus 89 ~~~~~~g~~G~~~r~~~~ 106 (223)
..|+.|+..||++++|+.
T Consensus 13 ~~C~~Cg~~GH~a~~C~~ 30 (55)
T 1a1t_A 13 VKCFNCGKEGHIAKNCRA 30 (55)
T ss_dssp CBCTTTCCBSSCGGGCSS
T ss_pred cceeeeCCCCcChhhcCC
Confidence 345566666666665554
No 249
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=27.46 E-value=36 Score=25.85 Aligned_cols=21 Identities=29% Similarity=0.605 Sum_probs=18.6
Q ss_pred CCCCcCCCCCCCCCCCCCCCC
Q 041602 88 DLKCYECGEPGHFARECRLRI 108 (223)
Q Consensus 88 ~~~~~~~g~~G~~~r~~~~~~ 108 (223)
...|+.|+..||..++|+...
T Consensus 119 ~~~C~~Cg~~GH~~r~Cp~~~ 139 (148)
T 3ts2_A 119 PKKCHFCQSINHMVASCPLKA 139 (148)
T ss_dssp CCCCTTTCCSSCCGGGCTTTT
T ss_pred CCcccccCCcCCEeccCcCCC
Confidence 568999999999999999764
No 250
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=27.37 E-value=37 Score=19.20 Aligned_cols=18 Identities=50% Similarity=1.451 Sum_probs=14.0
Q ss_pred CCcCCCCCCCCCCCCCCC
Q 041602 90 KCYECGEPGHFARECRLR 107 (223)
Q Consensus 90 ~~~~~g~~G~~~r~~~~~ 107 (223)
.++.++..||.+++++..
T Consensus 2 ~C~~Cg~~GH~~~~C~~~ 19 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRAP 19 (37)
T ss_dssp CBSSSCCSSCCTTTSSCB
T ss_pred cccccCCCCcchhhCcCc
Confidence 467888888988888753
No 251
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=26.02 E-value=40 Score=27.12 Aligned_cols=36 Identities=8% Similarity=0.070 Sum_probs=28.7
Q ss_pred CeEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC
Q 041602 27 VLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN 62 (223)
Q Consensus 27 ~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~ 62 (223)
+|..+.....-+||-|||=.+..++.+|++.+.+..
T Consensus 138 ~I~Si~~~d~lkGYIyVEA~~~~~V~~ai~Gi~~vy 173 (200)
T 2exu_A 138 KILSIFQRDNYTGRIYIEAPKQSVIEKFCNGVPDIY 173 (200)
T ss_dssp CCCEEECCTTSTTEEEEECSCHHHHHHHHTTCTTEE
T ss_pred cEEEEEecCCCcEEEEEEECCHHHHHHHHhhhhhhh
Confidence 366766655569999999999999999988776554
No 252
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=25.02 E-value=1.3e+02 Score=26.03 Aligned_cols=48 Identities=17% Similarity=0.120 Sum_probs=35.3
Q ss_pred EEecCCCCCC----HHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCHHHHHHHHH
Q 041602 5 YVGNLDPRVS----ERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIR 56 (223)
Q Consensus 5 fVgnLp~~~t----e~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~e~A~~Al~ 56 (223)
+|||+..-.. ...+.++.++||+|..+.+ -+.-+|...+++.+++++.
T Consensus 18 liGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~----g~~~~vvv~~p~~~k~il~ 69 (494)
T 3swz_A 18 LVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRM----GTKTTVIVGHHQLAKEVLI 69 (494)
T ss_dssp EEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEE----TTEEEEEECSHHHHHHHHT
T ss_pred eEcchHHhCCCCchhHHHHHHHHHcCCEEEEEe----CCCCEEEECCHHHHHHHHH
Confidence 5788864321 3567777789999988876 3456778889999998874
No 253
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=23.79 E-value=1.2e+02 Score=17.89 Aligned_cols=55 Identities=11% Similarity=0.125 Sum_probs=38.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeEEEEEeeCCCCEEEEEEcCH---HHHHHHHH
Q 041602 1 MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDR---RDAVDAIR 56 (223)
Q Consensus 1 ~ttLfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~rGfaFV~F~~~---e~A~~Al~ 56 (223)
|.++.|.|+.-......++..+.+...|..+.+... .+.+.|.|... ++..++++
T Consensus 1 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-~~~~~v~~~~~~~~~~i~~~i~ 58 (69)
T 2kt2_A 1 MTHLKITGMTCDSCAAHVKEALEKVPGVQSALVSYP-KGTAQLAIVPGTSPDALTAAVA 58 (69)
T ss_dssp CCCEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETT-TTEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCcccHHHHHHHHHHHHcCCCeeEEEEEcc-CCEEEEEECCCCCHHHHHHHHH
Confidence 467788888776667889999998877888777533 46778888743 44444544
No 254
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=23.15 E-value=1.1e+02 Score=22.76 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=27.2
Q ss_pred eEEEEEeeCCCCEEEEEEcCHHHHHHHHHHhCCCC
Q 041602 28 LRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKN 62 (223)
Q Consensus 28 I~~v~i~~~~rGfaFV~F~~~e~A~~Al~~lng~~ 62 (223)
|..+.++..-+||-||++...++...++..+.|..
T Consensus 33 i~~v~vp~~fPGYVfVe~~~~~~~~~~v~~t~gV~ 67 (152)
T 3p8b_B 33 IYAILAPSRVKGYIFVEAPNKGVVDEAIRGIRHAR 67 (152)
T ss_dssp CCEEEECTTCCSEEEEEESSHHHHHHHHTTCTTEE
T ss_pred EEEEEeecCCCcEEEEEEEchHHHHHHHhCCCCEE
Confidence 66777665568999999999888888887666553
No 255
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=23.02 E-value=43 Score=19.45 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=18.7
Q ss_pred eeeechhhHHHHHHHHHHHHHHHh
Q 041602 186 LIFYPSNLFSIFLVLYCIQLYLSS 209 (223)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~ 209 (223)
|-|.|++||-+.=..|.|-||+..
T Consensus 6 l~fiAt~Lfi~iPt~FLlilYvqT 29 (36)
T 3arc_M 6 LGLIATALFVLVPSVFLIILYVQT 29 (36)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhee
Confidence 457788888888788888888754
No 256
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=22.89 E-value=92 Score=25.79 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=24.1
Q ss_pred EEEEecCCCCCCHHHHHHHHHcCCCeEEEEE
Q 041602 3 RVYVGNLDPRVSERDLEDEFRMFGVLRSVWV 33 (223)
Q Consensus 3 tLfVgnLp~~~te~~L~~~F~~~G~I~~v~i 33 (223)
.+.|+|||++++...|..+++. ..+....+
T Consensus 112 ~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 112 SLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp EEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred cEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 3578999999999999999987 66655444
No 257
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=21.79 E-value=1.1e+02 Score=21.30 Aligned_cols=49 Identities=18% Similarity=0.386 Sum_probs=30.9
Q ss_pred CCCCCCHHHHHHHHHcC--------CCeEEEEEee----------CCCC-EEEEEEcCHHHHHHHHHH
Q 041602 9 LDPRVSERDLEDEFRMF--------GVLRSVWVAR----------RPPG-YAFVEFDDRRDAVDAIRA 57 (223)
Q Consensus 9 Lp~~~te~~L~~~F~~~--------G~I~~v~i~~----------~~rG-faFV~F~~~e~A~~Al~~ 57 (223)
|.++++++++..+.+++ |.|..+.-.+ ..+| |.++.|....++.+.++.
T Consensus 10 l~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~~G~Y~l~~f~a~~~~i~eler 77 (101)
T 1cqm_A 10 LNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLAR 77 (101)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeChHHHHHHHH
Confidence 35667777766555443 4677765432 2234 888999987777666653
No 258
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=21.74 E-value=1.5e+02 Score=22.71 Aligned_cols=51 Identities=22% Similarity=0.361 Sum_probs=37.4
Q ss_pred EEEecCCCCCCHHHHHHHHHc-CC-CeEEEEEeeCCCC--EEEEEEcCHHHHHHH
Q 041602 4 VYVGNLDPRVSERDLEDEFRM-FG-VLRSVWVARRPPG--YAFVEFDDRRDAVDA 54 (223)
Q Consensus 4 LfVgnLp~~~te~~L~~~F~~-~G-~I~~v~i~~~~rG--faFV~F~~~e~A~~A 54 (223)
.||.-++...|..+|++.+++ |+ +|..|..+..+.| -|||.+....+|.+.
T Consensus 91 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldv 145 (152)
T 3iz5_X 91 TLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDV 145 (152)
T ss_dssp EEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHH
Confidence 466677888898899888876 66 7777766544444 599999887776654
Done!