Your job contains 1 sequence.
>041604
CIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEME
FVVTDLVTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCF
FSATDVLAKHDEKYMPQEVAAAIEKNKKMLEEQQQEEGGKDS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 041604
(162 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2074363 - symbol:G1 "transmembrane protein G1P... 639 1.4e-62 1
TIGR_CMR|SO_0259 - symbol:SO_0259 "cytochrome c biogenesi... 131 5.5e-18 2
UNIPROTKB|P69490 - symbol:ccmE "membrane anchored peripla... 142 1.6e-16 2
TIGR_CMR|SPO_A0193 - symbol:SPO_A0193 "cytochrome c-type ... 114 7.9e-14 2
UNIPROTKB|Q9KQE7 - symbol:ccmE "Cytochrome c-type biogene... 154 3.5e-11 1
TIGR_CMR|VC_2053 - symbol:VC_2053 "cytochrome c-type biog... 154 3.5e-11 1
TIGR_CMR|ECH_0789 - symbol:ECH_0789 "cytochrome c-type bi... 150 9.4e-11 1
TIGR_CMR|CPS_1030 - symbol:CPS_1030 "cytochrome c-type bi... 147 2.0e-10 1
TIGR_CMR|NSE_0828 - symbol:NSE_0828 "putative cytochrome ... 99 1.1e-09 2
TIGR_CMR|APH_0526 - symbol:APH_0526 "cytochrome c-type bi... 133 5.9e-09 1
TIGR_CMR|SPO_1877 - symbol:SPO_1877 "cytochrome c-type bi... 104 2.7e-05 1
>TAIR|locus:2074363 [details] [associations]
symbol:G1 "transmembrane protein G1P-related 1"
species:3702 "Arabidopsis thaliana" [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0017004 "cytochrome complex assembly"
evidence=ISS] [GO:0005743 "mitochondrial inner membrane"
evidence=IDA] [GO:0018063 "cytochrome c-heme linkage" evidence=IGI]
[GO:0020037 "heme binding" evidence=IDA] [GO:0006626 "protein
targeting to mitochondrion" evidence=RCA] [GO:0019243
"methylglyoxal catabolic process to D-lactate" evidence=RCA]
HAMAP:MF_01959 InterPro:IPR004329 Pfam:PF03100 GO:GO:0016021
GO:GO:0005886 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005743
GO:GO:0020037 EMBL:AF049236 Gene3D:2.40.50.140 InterPro:IPR012340
GO:GO:0018063 eggNOG:COG2332 HOGENOM:HOG000009661 SUPFAM:SSF82093
EMBL:U72502 EMBL:BT004607 EMBL:AK227474 IPI:IPI00518378 PIR:T51150
RefSeq:NP_190747.1 UniGene:At.19973 HSSP:O52690
ProteinModelPortal:Q96326 SMR:Q96326 STRING:Q96326 PaxDb:Q96326
EnsemblPlants:AT3G51790.1 GeneID:824342 KEGG:ath:AT3G51790
TAIR:At3g51790 InParanoid:Q96326 OMA:CFFSATE PhylomeDB:Q96326
ProtClustDB:CLSN2684726 Genevestigator:Q96326 Uniprot:Q96326
Length = 256
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 120/160 (75%), Positives = 141/160 (88%)
Query: 1 CIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEME 60
CIAGF+VIVLN FQDQLVFY+TPS+A+EK+ NP+KNKFRLGGLVLEGSVA PA+S EME
Sbjct: 93 CIAGFVVIVLNQFQDQLVFYLTPSDAMEKFAENPTKNKFRLGGLVLEGSVAQPAASQEME 152
Query: 61 FVVTDLVTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCF 120
FV+TDL+TDILVRY+GSLPDLFREGHSVVVEGFIKP T+E++ S K +S+ AR+ DCF
Sbjct: 153 FVITDLITDILVRYKGSLPDLFREGHSVVVEGFIKPYTDEVRKEVSTKPISKKARNLDCF 212
Query: 121 FSATDVLAKHDEKYMPQEVAAAIEKNKKMLEEQQQEEGGK 160
FSAT+VLAKHDEKYMPQEVAAAIEKNKK++E E+ +
Sbjct: 213 FSATEVLAKHDEKYMPQEVAAAIEKNKKIIEAAATEQAAE 252
>TIGR_CMR|SO_0259 [details] [associations]
symbol:SO_0259 "cytochrome c biogenesis protein CcmE"
species:211586 "Shewanella oneidensis MR-1" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0017004 "cytochrome complex assembly"
evidence=ISS] HAMAP:MF_01959 InterPro:IPR004329 Pfam:PF03100
GO:GO:0016021 GO:GO:0005886 GO:GO:0046872 GO:GO:0017004
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:2.40.50.140
InterPro:IPR012340 EMBL:AF044582 eggNOG:COG2332
HOGENOM:HOG000009661 KO:K02197 GO:GO:0017003 SUPFAM:SSF82093
OMA:FYTPSQI ProtClustDB:PRK13165 RefSeq:NP_715899.1 PDB:1J6Q
PDB:1LM0 PDBsum:1J6Q PDBsum:1LM0 ProteinModelPortal:Q8EK44
SMR:Q8EK44 GeneID:1168143 KEGG:son:SO_0259 PATRIC:23520217
EvolutionaryTrace:Q8EK44 Uniprot:Q8EK44
Length = 161
Score = 131 (51.2 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
Identities = 36/98 (36%), Positives = 53/98 (54%)
Query: 2 IAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSK----NKFRLGGLVLEGSVAHPASSS 57
IA ++ LN+ + +FY TPSE + K + R+GG+V GS+ +S
Sbjct: 22 IASLLLYALNSNLN--LFY-TPSEIVNGKTDTGVKPEAGQRIRVGGMVTVGSMVRDPNSL 78
Query: 58 EMEFVVTD-LVTDILVRYQGSLPDLFREGHSVVVEGFI 94
++F V D L +ILV Y LPDLFREG +V +G +
Sbjct: 79 HVQFAVHDSLGGEILVTYDDLLPDLFREGQGIVAQGVL 116
Score = 101 (40.6 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 110 VSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEKNKKMLEEQQQE 156
V++ D +AT+VLAKHDE YMP EVA A+ + + L+ QQ+
Sbjct: 111 VAQGVLGEDGKLAATEVLAKHDENYMPPEVAEAMGQKHEKLDYSQQK 157
>UNIPROTKB|P69490 [details] [associations]
symbol:ccmE "membrane anchored periplasmic heme chaperone
CcmE" species:83333 "Escherichia coli K-12" [GO:0020037 "heme
binding" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0017003 "protein-heme linkage" evidence=IEA;IDA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0031237
"intrinsic to external side of plasma membrane, in periplasmic
space" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0017004 "cytochrome complex assembly" evidence=IEA]
HAMAP:MF_01959 InterPro:IPR004329 Pfam:PF03100 GO:GO:0016021
GO:GO:0005886 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0017004 EMBL:U00008
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG2332
HOGENOM:HOG000009661 KO:K02197 GO:GO:0017003 SUPFAM:SSF82093
OMA:FYTPSQI PIR:C64989 RefSeq:NP_416701.1 RefSeq:YP_490435.1
PDB:1SR3 PDBsum:1SR3 ProteinModelPortal:P69490 SMR:P69490
IntAct:P69490 MINT:MINT-1503318 PRIDE:P69490
EnsemblBacteria:EBESCT00000001388 EnsemblBacteria:EBESCT00000001389
EnsemblBacteria:EBESCT00000001390 EnsemblBacteria:EBESCT00000017596
GeneID:12931489 GeneID:946697 KEGG:ecj:Y75_p2158 KEGG:eco:b2197
PATRIC:32119753 EchoBASE:EB1986 EcoGene:EG12055
ProtClustDB:PRK13165 BioCyc:EcoCyc:CCME-MONOMER
BioCyc:ECOL316407:JW2185-MONOMER EvolutionaryTrace:P69490
Genevestigator:P69490 Uniprot:P69490
Length = 159
Score = 142 (55.0 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 34/91 (37%), Positives = 50/91 (54%)
Query: 6 IVIVLNNFQDQLVFYVTPSEAL---EKYQSNPSKN-KFRLGGLVLEGSVAHPASSSEMEF 61
I +VL + + + TP E L + Q P + R+GG+V+ GSV +S ++ F
Sbjct: 23 IGLVLYALRSNIDLFYTPGEILYGKRETQQMPEVGQRLRVGGMVMPGSVQRDPNSLKVTF 82
Query: 62 VVTDLVTDILVRYQGSLPDLFREGHSVVVEG 92
+ D + V Y+G LPDLFREG VVV+G
Sbjct: 83 TIYDAEGSVDVSYEGILPDLFREGQGVVVQG 113
Score = 76 (31.8 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 123 ATDVLAKHDEKYMPQEVAAAIEKNKK 148
A +VLAKHDE Y P EV A+E N +
Sbjct: 123 AKEVLAKHDENYTPPEVEKAMEANHR 148
>TIGR_CMR|SPO_A0193 [details] [associations]
symbol:SPO_A0193 "cytochrome c-type biogenesis protein
CycJ" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0017004 "cytochrome complex
assembly" evidence=ISS] HAMAP:MF_01959 InterPro:IPR004329
Pfam:PF03100 GO:GO:0016021 GO:GO:0005886 GO:GO:0046872
GO:GO:0017004 Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG2332
HOGENOM:HOG000009661 KO:K02197 ProtClustDB:PRK13254 GO:GO:0017003
SUPFAM:SSF82093 EMBL:CP000032 RefSeq:YP_165022.1
ProteinModelPortal:Q5LL36 GeneID:3196798 GenomeReviews:CP000032_GR
KEGG:sil:SPOA0193 PATRIC:23381720 OMA:AKHDEVY Uniprot:Q5LL36
Length = 139
Score = 114 (45.2 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
Identities = 28/82 (34%), Positives = 43/82 (52%)
Query: 14 QDQLVFYVTPSEALEKYQSNPSKNK-FRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILV 72
+D + F+ TP+E P+ N+ R+GG+V GS+ ++ F VTD T +
Sbjct: 32 RDGIQFFRTPTEVAT---DPPAANEVLRIGGMVEHGSLVRDGAN--FSFRVTDGETSFPI 86
Query: 73 RYQGSLPDLFREGHSVVVEGFI 94
Y G +PDLFREG + G +
Sbjct: 87 SYVGIVPDLFREGEGTIATGSV 108
Score = 78 (32.5 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
Identities = 14/20 (70%), Positives = 17/20 (85%)
Query: 121 FSATDVLAKHDEKYMPQEVA 140
F AT++LAKHDE YMP E+A
Sbjct: 113 FRATEILAKHDEVYMPSELA 132
>UNIPROTKB|Q9KQE7 [details] [associations]
symbol:ccmE "Cytochrome c-type biogenesis protein CcmE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0017004
"cytochrome complex assembly" evidence=ISS] HAMAP:MF_01959
InterPro:IPR004329 Pfam:PF03100 GO:GO:0016021 GO:GO:0005886
GO:GO:0003824 GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0017004 Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG2332
KO:K02197 GO:GO:0017003 SUPFAM:SSF82093 OMA:FYTPSQI
ProtClustDB:PRK13165 PIR:G82124 RefSeq:NP_231685.1
ProteinModelPortal:Q9KQE7 SMR:Q9KQE7 DNASU:2613433 GeneID:2613433
KEGG:vch:VC2053 PATRIC:20083140 Uniprot:Q9KQE7
Length = 160
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 38/96 (39%), Positives = 55/96 (57%)
Query: 4 GFIVIVLNNFQDQLVFYVTPSEALE-KYQSNPS-KNKFRLGGLVLEGSVAHPASSSEMEF 61
G I+ LN D +FY TP+E + K P + R+GG+V+EGSV +S ++ F
Sbjct: 24 GLIIYALNQNMD--LFY-TPTELVYGKEGKKPEIGQRLRIGGMVVEGSVKRDPNSLKVSF 80
Query: 62 VVTDLVTDILVRYQGSLPDLFREGHSVVVEG-FIKP 96
+ D+ I V Y G LPDLFREG +V +G ++P
Sbjct: 81 DLHDVGPSITVTYDGILPDLFREGQGIVAQGVLVEP 116
Score = 106 (42.4 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 80 DLFREGHSVVV--EGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQ 137
DL G S+ V +G + + E + + ++ + E + A +VLAKHDE YMP
Sbjct: 81 DLHDVGPSITVTYDGILPDLFREGQGIVAQGVLVEPTK-----IEAFEVLAKHDENYMPP 135
Query: 138 EVAAAIEKNKKMLEEQQQEEGGKD 161
E+A A++K L+ Q+++ G D
Sbjct: 136 EIAEAMKKTHAPLQYSQEQKQGSD 159
>TIGR_CMR|VC_2053 [details] [associations]
symbol:VC_2053 "cytochrome c-type biogenesis protein CcmE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0017004 "cytochrome complex
assembly" evidence=ISS] HAMAP:MF_01959 InterPro:IPR004329
Pfam:PF03100 GO:GO:0016021 GO:GO:0005886 GO:GO:0003824
GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0017004
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG2332 KO:K02197
GO:GO:0017003 SUPFAM:SSF82093 OMA:FYTPSQI ProtClustDB:PRK13165
PIR:G82124 RefSeq:NP_231685.1 ProteinModelPortal:Q9KQE7 SMR:Q9KQE7
DNASU:2613433 GeneID:2613433 KEGG:vch:VC2053 PATRIC:20083140
Uniprot:Q9KQE7
Length = 160
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 38/96 (39%), Positives = 55/96 (57%)
Query: 4 GFIVIVLNNFQDQLVFYVTPSEALE-KYQSNPS-KNKFRLGGLVLEGSVAHPASSSEMEF 61
G I+ LN D +FY TP+E + K P + R+GG+V+EGSV +S ++ F
Sbjct: 24 GLIIYALNQNMD--LFY-TPTELVYGKEGKKPEIGQRLRIGGMVVEGSVKRDPNSLKVSF 80
Query: 62 VVTDLVTDILVRYQGSLPDLFREGHSVVVEG-FIKP 96
+ D+ I V Y G LPDLFREG +V +G ++P
Sbjct: 81 DLHDVGPSITVTYDGILPDLFREGQGIVAQGVLVEP 116
Score = 106 (42.4 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 80 DLFREGHSVVV--EGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQ 137
DL G S+ V +G + + E + + ++ + E + A +VLAKHDE YMP
Sbjct: 81 DLHDVGPSITVTYDGILPDLFREGQGIVAQGVLVEPTK-----IEAFEVLAKHDENYMPP 135
Query: 138 EVAAAIEKNKKMLEEQQQEEGGKD 161
E+A A++K L+ Q+++ G D
Sbjct: 136 EIAEAMKKTHAPLQYSQEQKQGSD 159
>TIGR_CMR|ECH_0789 [details] [associations]
symbol:ECH_0789 "cytochrome c-type biogenesis protein
CcmE" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0017004
"cytochrome complex assembly" evidence=ISS] HAMAP:MF_01959
InterPro:IPR004329 Pfam:PF03100 GO:GO:0016021 GO:GO:0005886
GO:GO:0046872 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0017004
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG2332
HOGENOM:HOG000009661 KO:K02197 ProtClustDB:PRK13254 GO:GO:0017003
SUPFAM:SSF82093 OMA:FYTPSQI RefSeq:YP_507587.1
ProteinModelPortal:Q2GG46 STRING:Q2GG46 GeneID:3927957
KEGG:ech:ECH_0789 PATRIC:20577006
BioCyc:ECHA205920:GJNR-792-MONOMER Uniprot:Q2GG46
Length = 133
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 33/95 (34%), Positives = 56/95 (58%)
Query: 6 IVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTD 65
+V+VLN Q+ + F+ TP+E L N +++ R+GG++++GSV + F +TD
Sbjct: 22 VVVVLNKLQNNISFFFTPTEVLSNAIYNNNRD-IRIGGMIIKGSVEK--HDDFISFYITD 78
Query: 66 LVTDILVRYQGSLPDLFREGHSVVVEGFIKPITEE 100
L + + Y+G LP LF EG +V +G K ++ E
Sbjct: 79 LENHMKILYKGILPPLFSEGSWIVAKG--KMVSSE 111
>TIGR_CMR|CPS_1030 [details] [associations]
symbol:CPS_1030 "cytochrome c-type biogenesis protein
CcmE" species:167879 "Colwellia psychrerythraea 34H" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0017004 "cytochrome complex
assembly" evidence=ISS] HAMAP:MF_01959 InterPro:IPR004329
Pfam:PF03100 GO:GO:0016021 GO:GO:0005886 GO:GO:0046872
GO:GO:0017004 EMBL:CP000083 GenomeReviews:CP000083_GR
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG2332
HOGENOM:HOG000009661 KO:K02197 GO:GO:0017003 SUPFAM:SSF82093
OMA:FYTPSQI RefSeq:YP_267779.1 ProteinModelPortal:Q487I6 SMR:Q487I6
STRING:Q487I6 GeneID:3518634 KEGG:cps:CPS_1030 PATRIC:21465337
BioCyc:CPSY167879:GI48-1116-MONOMER Uniprot:Q487I6
Length = 178
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 49/164 (29%), Positives = 89/164 (54%)
Query: 2 IAGFIVIVLNNFQDQLVFYVTPSEALE-KYQSN--PSKN-KFRLGGLVLEGSVAHPASSS 57
++G ++ L+ D +F+ TPSE + K ++ PS + R+GGLV+ GSV +
Sbjct: 22 VSGLVLYALSQNID--LFF-TPSEITQGKKETGLKPSLGQRIRIGGLVVPGSVKRDPENL 78
Query: 58 EMEFVVTDLVTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSR 117
++ F ++D+ I+ ++ S P + +V EG + + E + + + +++E+ +
Sbjct: 79 KVSFRLSDMAMPIV--FKDSDPMV-----TVYYEGILPDLFREGQGIVANGTLTEHPPT- 130
Query: 118 DCFFSATDVLAKHDEKYMPQEVA-AAIEKNKKMLEEQQQEEGGK 160
A++VLAKHDE YMP E+A AA +K+ K +Q E K
Sbjct: 131 GLSIEASEVLAKHDENYMPAELAEAAGQKHDKATYSDKQLESKK 174
>TIGR_CMR|NSE_0828 [details] [associations]
symbol:NSE_0828 "putative cytochrome c-type biogenesis
protein CcmE" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0017004
"cytochrome complex assembly" evidence=ISS] HAMAP:MF_01959
InterPro:IPR004329 Pfam:PF03100 GO:GO:0016021 GO:GO:0005886
GO:GO:0046872 GO:GO:0017004 Gene3D:2.40.50.140 InterPro:IPR012340
EMBL:CP000237 GenomeReviews:CP000237_GR eggNOG:COG2332
HOGENOM:HOG000009661 KO:K02197 GO:GO:0017003 SUPFAM:SSF82093
OMA:AKHDEVY RefSeq:YP_506698.1 ProteinModelPortal:Q2GCU8
STRING:Q2GCU8 GeneID:3931631 KEGG:nse:NSE_0828 PATRIC:22681651
ProtClustDB:CLSK2528118 BioCyc:NSEN222891:GHFU-834-MONOMER
Uniprot:Q2GCU8
Length = 135
Score = 99 (39.9 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 25/88 (28%), Positives = 47/88 (53%)
Query: 3 AGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFV 62
+G + ++L N + + F+ PS+ SN + ++GG++ A S + F+
Sbjct: 20 SGVVSLMLFNLSESISFFYLPSDVARVVASN---REIKVGGIIK----AIKKSKDGVRFL 72
Query: 63 VTDLVTDILVRYQGSLPDLFREGHSVVV 90
++D +I V Y+G LP L ++G +VVV
Sbjct: 73 LSDGAAEIEVLYEGILPSLVQDGINVVV 100
Score = 53 (23.7 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 114 ARSRDCFFSATDVLAKHDEKYMPQE 138
AR A VL KHDE+Y P E
Sbjct: 102 ARFEGGLLLAKRVLVKHDERYYPPE 126
>TIGR_CMR|APH_0526 [details] [associations]
symbol:APH_0526 "cytochrome c-type biogenesis protein
CcmE" species:212042 "Anaplasma phagocytophilum HZ" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0017004 "cytochrome complex
assembly" evidence=ISS] HAMAP:MF_01959 InterPro:IPR004329
Pfam:PF03100 GO:GO:0016021 GO:GO:0005886 GO:GO:0046872
GO:GO:0017004 EMBL:CP000235 GenomeReviews:CP000235_GR
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG2332
HOGENOM:HOG000009661 KO:K02197 ProtClustDB:PRK13254 GO:GO:0017003
SUPFAM:SSF82093 RefSeq:YP_505121.1 ProteinModelPortal:Q2GKI0
STRING:Q2GKI0 GeneID:3930854 KEGG:aph:APH_0526 PATRIC:20949694
OMA:FYTPSQI BioCyc:APHA212042:GHPM-550-MONOMER Uniprot:Q2GKI0
Length = 141
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 35/121 (28%), Positives = 63/121 (52%)
Query: 1 CIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEME 60
C++ F++ L+ + F+ TP+E + S+ R+GG++++GS+ S +
Sbjct: 20 CVSAFVLFELSK---SISFFCTPTELVAD-PIKSSRYPIRVGGMIVKGSIVRHGDS--VT 73
Query: 61 FVVTDLVTDILVRYQGSLPDLFREGHSVVVEG-FIKP--ITEEIKNVKSEKSVSENARSR 117
F +TDL T++ V Y+G LP +F E + +G F+ I EE+ EK + + S
Sbjct: 74 FSITDLGTELEVTYRGVLPPMFGEDVGAIAKGRFVDGVFIAEELLAKHDEKYMPKKYSSS 133
Query: 118 D 118
D
Sbjct: 134 D 134
>TIGR_CMR|SPO_1877 [details] [associations]
symbol:SPO_1877 "cytochrome c-type biogenesis protein
CcmE" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0017004 "cytochrome complex
assembly" evidence=ISS] HAMAP:MF_01959 InterPro:IPR004329
Pfam:PF03100 GO:GO:0016021 GO:GO:0005886 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0046872 GO:GO:0017004
Gene3D:2.40.50.140 InterPro:IPR012340 RefSeq:YP_167114.1
ProteinModelPortal:Q5LS91 GeneID:3192772 KEGG:sil:SPO1877
PATRIC:23377087 eggNOG:COG2332 HOGENOM:HOG000009661 KO:K02197
OMA:PDQNVEF ProtClustDB:PRK13254 GO:GO:0017003 SUPFAM:SSF82093
Uniprot:Q5LS91
Length = 147
Score = 104 (41.7 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 14 QDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVR 73
+D + F+ PS+ + + PS+ FR+GGLV +G++ + F VTD + V
Sbjct: 32 RDGINFFRAPSDIIAE-PPQPSET-FRIGGLVEDGTLVR-GQGETVRFSVTDGGASVPVV 88
Query: 74 YQGSLPDLFREGHSVVVEG-FIKPITE 99
+ G LPDLF E ++ G ++ + E
Sbjct: 89 FTGVLPDLFAENQGMIGTGRYVNGVFE 115
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.131 0.359 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 162 162 0.00079 107 3 11 23 0.42 32
30 0.44 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 11
No. of states in DFA: 545 (58 KB)
Total size of DFA: 124 KB (2081 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.34u 0.17s 19.51t Elapsed: 00:00:02
Total cpu time: 19.34u 0.17s 19.51t Elapsed: 00:00:02
Start: Fri May 10 21:29:25 2013 End: Fri May 10 21:29:27 2013