BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041604
(162 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5P3K6|CCME_AROAE Cytochrome c-type biogenesis protein CcmE OS=Aromatoleum aromaticum
(strain EbN1) GN=ccmE PE=3 SV=1
Length = 148
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 80/155 (51%), Gaps = 23/155 (14%)
Query: 1 CIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEME 60
+ G + +VLN FQ LVF+ TP+E E P FR+GG+V GS+ A ++
Sbjct: 17 LLVGAVALVLNAFQQNLVFFHTPTEVAEG--KAPVGRAFRIGGMVETGSIRRAADGVTVQ 74
Query: 61 FVVTDLVTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCF 120
F +TD I V Y+GSLPDLF EG VV+G + P D
Sbjct: 75 FAITDTAKVIPVSYKGSLPDLFSEGKGAVVQGTLGP---------------------DGQ 113
Query: 121 FSATDVLAKHDEKYMPQEVAAAIEKNKKMLEEQQQ 155
F A++VLAKHDE YMP E A+++ +K + QQ
Sbjct: 114 FQASEVLAKHDENYMPPEAQHAVDQAQKAAQTVQQ 148
>sp|B3R8Z5|CCME_CUPTR Cytochrome c-type biogenesis protein CcmE OS=Cupriavidus
taiwanensis (strain R1 / LMG 19424) GN=ccmE PE=3 SV=1
Length = 157
Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 73/138 (52%), Gaps = 23/138 (16%)
Query: 8 IVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLV 67
+VLN F+ LVF+ +PS+ Q P FRLGGLV GS+ + FVVTD
Sbjct: 24 LVLNAFRANLVFFFSPSQV--AAQEAPVARSFRLGGLVASGSIRREGDGMTVRFVVTDTA 81
Query: 68 TDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVL 127
+ V+Y+G LPDLFREG VV G ++ D F AT+VL
Sbjct: 82 RQVPVQYRGLLPDLFREGKGVVARGQLRA---------------------DGTFVATEVL 120
Query: 128 AKHDEKYMPQEVAAAIEK 145
AKHDE YMP E AAA+++
Sbjct: 121 AKHDENYMPPEAAAALKQ 138
>sp|A1WWS3|CCME_HALHL Cytochrome c-type biogenesis protein CcmE OS=Halorhodospira
halophila (strain DSM 244 / SL1) GN=ccmE PE=3 SV=1
Length = 149
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 87/155 (56%), Gaps = 26/155 (16%)
Query: 1 CIAGFIV---IVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSS 57
+AG V +VLN F+D + F++TPSE + K S+ + FR+GGLV +GSV + S+
Sbjct: 14 VVAGVSVATALVLNAFRDNMTFFITPSEVMAK--SDMPERHFRIGGLVEDGSVERDSDST 71
Query: 58 EMEFVVTDLVTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSR 117
++ F VTD + V ++G LPDLFREG VVVEG I +
Sbjct: 72 QVRFRVTDTEASVPVDFEGILPDLFREGQGVVVEGRI---------------------TS 110
Query: 118 DCFFSATDVLAKHDEKYMPQEVAAAIEKNKKMLEE 152
+ F A +V+A+HDE YMP E A+++ + ++E
Sbjct: 111 NGVFKADNVMARHDEDYMPAEAQEALDRVEHSVDE 145
>sp|Q7WXB8|CCME_CUPNH Cytochrome c-type biogenesis protein CcmE OS=Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
GN=ccmE PE=3 SV=1
Length = 155
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 78/158 (49%), Gaps = 27/158 (17%)
Query: 1 CIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEME 60
C+ +VLN F+ LVF+ +PS+ P FRLGGLV GS+ +
Sbjct: 17 CVGIATTLVLNAFRSNLVFFFSPSQV--AAHEAPVARSFRLGGLVAPGSIRREGDGMTIR 74
Query: 61 FVVTDLVTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCF 120
F+VTD +LV Y+G LPDLFREG VV G ++ D
Sbjct: 75 FIVTDTARQVLVVYRGLLPDLFREGKGVVARGKLEA---------------------DGT 113
Query: 121 FSATDVLAKHDEKYMPQEVAAAIEK----NKKMLEEQQ 154
F A++VLAKHDE YMP E A A+++ N++M Q
Sbjct: 114 FVASEVLAKHDENYMPPEAADALKQAEQVNRRMAGTPQ 151
>sp|Q82WC5|CCME_NITEU Cytochrome c-type biogenesis protein CcmE OS=Nitrosomonas europaea
(strain ATCC 19718 / NBRC 14298) GN=ccmE PE=3 SV=1
Length = 149
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 75/143 (52%), Gaps = 23/143 (16%)
Query: 6 IVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTD 65
+V+VLN FQ LVF+ +PS+ K P FR+GGLV EGS+ + + F +TD
Sbjct: 22 VVLVLNAFQSNLVFFFSPSQVAAK--EAPIGKSFRIGGLVEEGSLKREGDGTTLNFAITD 79
Query: 66 LVTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATD 125
I V Y G LPDLF+EG VV +G + + D F A +
Sbjct: 80 TAEVIRVVYTGILPDLFKEGKGVVAQGKM---------------------ADDGIFYADE 118
Query: 126 VLAKHDEKYMPQEVAAAIEKNKK 148
VLAKHDE YMP E A+A+E+ K
Sbjct: 119 VLAKHDENYMPPEAASALEQAAK 141
>sp|Q46RW7|CCME_CUPPJ Cytochrome c-type biogenesis protein CcmE OS=Cupriavidus
pinatubonensis (strain JMP134 / LMG 1197) GN=ccmE PE=3
SV=1
Length = 159
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 83/166 (50%), Gaps = 29/166 (17%)
Query: 1 CIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEME 60
C + +VLN F+ LVF+ +PS+ P+ FRLGGLV GS+ +
Sbjct: 17 CAGIALALVLNAFRSNLVFFFSPSQV--AAHEAPASRSFRLGGLVAPGSIRREGDGMTVR 74
Query: 61 FVVTDLVTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCF 120
F+VTD ++ V Y+G LPDLFREG VV G + R
Sbjct: 75 FIVTDKAREVPVVYRGLLPDLFREGKGVVARGTL---------------------DRSGT 113
Query: 121 FSATDVLAKHDEKYMPQEVAAAIEK----NKKMLEEQQQEEGGKDS 162
F A++VLAKHDE YMP E A A+++ N++M Q EG +++
Sbjct: 114 FVASEVLAKHDENYMPPEAADALKQAEQVNRRM--ASQLAEGERET 157
>sp|A1KCJ1|CCME_AZOSB Cytochrome c-type biogenesis protein CcmE OS=Azoarcus sp. (strain
BH72) GN=ccmE PE=3 SV=1
Length = 148
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 72/143 (50%), Gaps = 23/143 (16%)
Query: 13 FQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILV 72
FQ LVF+ TPSE E P FR+GG+V GS+ A + FV+TD I V
Sbjct: 29 FQQNLVFFHTPSEVAEG--KAPVGKTFRVGGMVETGSIQRDADGVTVRFVITDTAKVIPV 86
Query: 73 RYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDE 132
Y+GSLPDLF+EG VV+G + D F AT+VLAKHDE
Sbjct: 87 SYRGSLPDLFKEGKGAVVQGTL---------------------GADGQFRATEVLAKHDE 125
Query: 133 KYMPQEVAAAIEKNKKMLEEQQQ 155
YMP E A A+E+ K QQ
Sbjct: 126 NYMPPEAAHALEQAHKTATTVQQ 148
>sp|B8EJK7|CCME_METSB Cytochrome c-type biogenesis protein CcmE OS=Methylocella
silvestris (strain BL2 / DSM 15510 / NCIMB 13906)
GN=ccmE PE=3 SV=1
Length = 166
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 84/157 (53%), Gaps = 26/157 (16%)
Query: 6 IVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTD 65
+ +V+ +D +VF+ +P+E EK +N ++ R+GGLV S+ + + F VTD
Sbjct: 22 VGLVMFALRDNIVFFYSPTELAEKPATNGAR--LRIGGLVKPASLDRQGDQT-VRFTVTD 78
Query: 66 LVTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATD 125
+ D+ V Y G LPDLFREG VV EG ++P D F A
Sbjct: 79 MKHDVAVTYTGLLPDLFREGQGVVAEGALRP---------------------DGVFHADS 117
Query: 126 VLAKHDEKYMPQEVAAAIEKNKKMLEEQQQEEGGKDS 162
VLAKHDE+YMP+EVA A++K EE + E GK S
Sbjct: 118 VLAKHDERYMPREVADALKKQGVWQEEGKSE--GKPS 152
>sp|B8IUY7|CCME_METNO Cytochrome c-type biogenesis protein CcmE OS=Methylobacterium
nodulans (strain ORS2060 / LMG 21967) GN=ccmE PE=3 SV=1
Length = 168
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 76/151 (50%), Gaps = 24/151 (15%)
Query: 8 IVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLV 67
+VL + +VF+ +PSE Q+ +FRLGGLV EGSV + FVVTD
Sbjct: 24 LVLWAMRGTIVFFRSPSEIAS--QAVAPGVRFRLGGLVQEGSVQR-GPDGRVAFVVTDNG 80
Query: 68 TDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVL 127
+ VRYQG LPDLFREG VV EG ++P F A VL
Sbjct: 81 ATVPVRYQGLLPDLFREGQGVVAEGMLEP---------------------GGMFRADTVL 119
Query: 128 AKHDEKYMPQEVAAAIEKNKKMLEEQQQEEG 158
AKHDE YMP+EVA A++K E + G
Sbjct: 120 AKHDETYMPREVADALKKQGHWQGEAKHPGG 150
>sp|A8HR72|CCME_AZOC5 Cytochrome c-type biogenesis protein CcmE OS=Azorhizobium
caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)
GN=ccmE PE=3 SV=1
Length = 174
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 84/157 (53%), Gaps = 31/157 (19%)
Query: 3 AGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFV 62
AG I+ LN D +VF+ TP+E ++ Q P + RLGGLV GSVA S + + F
Sbjct: 22 AGLILTALN---DTIVFFRTPTEVAQQ-QIAPGA-RLRLGGLVEPGSVAK--SGASVRFA 74
Query: 63 VTDLVTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFS 122
VTD + + V Y G LPDLFREG VV EG ++ D
Sbjct: 75 VTDGNSKVTVAYTGLLPDLFREGQGVVAEGVLQ---------------------SDGTVK 113
Query: 123 ATDVLAKHDEKYMPQEVAAAIEKNKKMLEEQQQEEGG 159
A VLAKHDE+YMP+EVA A++K+ ++ EEGG
Sbjct: 114 ADSVLAKHDERYMPREVADALKKSGHW---KEGEEGG 147
>sp|Q2RYF4|CCME_RHORT Cytochrome c-type biogenesis protein CcmE OS=Rhodospirillum rubrum
(strain ATCC 11170 / NCIB 8255) GN=ccmE PE=3 SV=1
Length = 153
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 74/142 (52%), Gaps = 25/142 (17%)
Query: 8 IVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLV 67
+ L FQD LVF+ +P++ EK +FR+GGLV EGSV + + F+VTDL+
Sbjct: 24 LTLTAFQDNLVFFYSPTDLQEK--GVDQGRRFRVGGLVEEGSVVRDGET--VRFIVTDLM 79
Query: 68 TDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVL 127
+ VRY G LPDLFREG VV EG A F A VL
Sbjct: 80 NTVTVRYTGMLPDLFREGQGVVAEG---------------------AMDGAGTFVAASVL 118
Query: 128 AKHDEKYMPQEVAAAIEKNKKM 149
AKHDE YMP EVA +++ + K
Sbjct: 119 AKHDENYMPPEVAESLKASGKW 140
>sp|Q2Y9Q8|CCME_NITMU Cytochrome c-type biogenesis protein CcmE OS=Nitrosospira
multiformis (strain ATCC 25196 / NCIMB 11849) GN=ccmE
PE=3 SV=1
Length = 148
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 73/142 (51%), Gaps = 23/142 (16%)
Query: 7 VIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDL 66
V+VLN FQ LVF+ +P++ P FR+GGLV EGSV A + F+VTD
Sbjct: 23 VLVLNAFQSNLVFFFSPTQVAN--NEAPVGKSFRIGGLVEEGSVKRQADGVTVNFLVTDT 80
Query: 67 VTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDV 126
I V Y G LPDLF+EG VV +G + + D F A +V
Sbjct: 81 AKVIPVVYTGILPDLFKEGKGVVAQGKL---------------------ASDGIFRADEV 119
Query: 127 LAKHDEKYMPQEVAAAIEKNKK 148
LAKHDE YMP E A A+++ K
Sbjct: 120 LAKHDENYMPPEAAGALDQADK 141
>sp|Q478K9|CCME_DECAR Cytochrome c-type biogenesis protein CcmE OS=Dechloromonas
aromatica (strain RCB) GN=ccmE PE=3 SV=1
Length = 153
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 70/135 (51%), Gaps = 23/135 (17%)
Query: 9 VLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVT 68
VLN + Y++P++ E P FR+GGLV EGS+ A + FVVTD
Sbjct: 25 VLNALNSNIALYISPTDVAE--GKAPQGKAFRIGGLVKEGSLQRQADGVTIAFVVTDTAK 82
Query: 69 DILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLA 128
D+ V Y+G LPDLF+EG VV +G + + D F+A++VLA
Sbjct: 83 DMTVHYKGILPDLFKEGKGVVAQGKM---------------------AADGTFTASEVLA 121
Query: 129 KHDEKYMPQEVAAAI 143
KHDE YMP E A A+
Sbjct: 122 KHDENYMPPEAAKAV 136
>sp|C1D9H2|CCME_LARHH Cytochrome c-type biogenesis protein CcmE OS=Laribacter
hongkongensis (strain HLHK9) GN=ccmE PE=3 SV=1
Length = 146
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 73/138 (52%), Gaps = 23/138 (16%)
Query: 8 IVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLV 67
++LN F+ LVF+ TP+E + Q + + R+GGLV GSV + FV+TD
Sbjct: 25 LILNAFRSNLVFFHTPTE-IAAGQVD-TDRVIRVGGLVEAGSVEREPGGLRVRFVITDTA 82
Query: 68 TDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVL 127
+ VRY+G LPDLFREGH VV+G I D +AT VL
Sbjct: 83 RSVPVRYEGILPDLFREGHGTVVQGRI---------------------GTDGVLAATQVL 121
Query: 128 AKHDEKYMPQEVAAAIEK 145
AKHDE YMP E A AI++
Sbjct: 122 AKHDENYMPPEAADAIQR 139
>sp|Q0A805|CCME_ALHEH Cytochrome c-type biogenesis protein CcmE OS=Alkalilimnicola
ehrlichei (strain MLHE-1) GN=ccmE PE=3 SV=1
Length = 158
Score = 96.3 bits (238), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 68/133 (51%), Gaps = 23/133 (17%)
Query: 13 FQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILV 72
FQD LVF+ TPSE + + P R+GGLV GSV A+S+ + F VTD I V
Sbjct: 29 FQDNLVFFFTPSEVMAR--EAPIDRPIRIGGLVKAGSVEREAASARVHFKVTDTAESITV 86
Query: 73 RYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDE 132
Y G LPDLFREG VV +G + D F AT VLA+HDE
Sbjct: 87 SYDGILPDLFREGQGVVAQGRL---------------------GADGRFHATQVLARHDE 125
Query: 133 KYMPQEVAAAIEK 145
YMP E A+++
Sbjct: 126 TYMPAEAKEALDR 138
>sp|B1XWE8|CCME_LEPCP Cytochrome c-type biogenesis protein CcmE OS=Leptothrix cholodnii
(strain ATCC 51168 / LMG 8142 / SP-6) GN=ccmE PE=3 SV=1
Length = 153
Score = 95.9 bits (237), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 82/161 (50%), Gaps = 26/161 (16%)
Query: 1 CIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEME 60
+ +VLN FQ LVF+ +PS+ + K P FRLGG+V +GSV +
Sbjct: 17 AVGAIATLVLNAFQSNLVFFYSPSQVVAK--EVPDGRTFRLGGMVEDGSVKR--EGVMVS 72
Query: 61 FVVTDLVTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCF 120
FVVTD V + VR++G LPDLF+EG VV +G ++ T
Sbjct: 73 FVVTDTVQKVPVRFEGILPDLFKEGKGVVAQGKVEGGT---------------------- 110
Query: 121 FSATDVLAKHDEKYMPQEVAAAIEKNKKMLEEQQQEEGGKD 161
F A +VLAKHDE YMP E A A+++ K+ + Q + D
Sbjct: 111 FIAKEVLAKHDENYMPPEAAEALKRAKEGGQMQSSQAATGD 151
>sp|A4SZ14|CCME_POLSQ Cytochrome c-type biogenesis protein CcmE OS=Polynucleobacter
necessarius subsp. asymbioticus (strain DSM 18221 / CIP
109841 / QLW-P1DMWA-1) GN=ccmE PE=3 SV=1
Length = 144
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 74/142 (52%), Gaps = 25/142 (17%)
Query: 7 VIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDL 66
+++LN + YVTPS+ + P FR+GGLV EGS+ + FV+TDL
Sbjct: 23 LLILNALNSNIALYVTPSDVVAG--KAPQGQAFRIGGLVKEGSLKR--DGLTVHFVITDL 78
Query: 67 VTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDV 126
V DI V Y G LPDLF+EG V++G + P E F A++V
Sbjct: 79 VKDIPVSYTGILPDLFKEGKGAVIQGNLNPQGE---------------------FIASEV 117
Query: 127 LAKHDEKYMPQEVAAAIEKNKK 148
LAKHDE YMP E A+E+ +K
Sbjct: 118 LAKHDENYMPPEAKHALEQAQK 139
>sp|B2UBM4|CCME_RALPJ Cytochrome c-type biogenesis protein CcmE OS=Ralstonia pickettii
(strain 12J) GN=ccmE PE=3 SV=1
Length = 156
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 73/156 (46%), Gaps = 23/156 (14%)
Query: 1 CIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEME 60
C + LN F+ LVF+ +P++ K P FRLGGLV GS+ +
Sbjct: 17 CAGAATALTLNAFRSNLVFFFSPTQIAAK--EAPVAQVFRLGGLVERGSIQRERDGMTIR 74
Query: 61 FVVTDLVTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCF 120
F+VTD + V Y G LPDLFREG VV G + D
Sbjct: 75 FIVTDTARGVPVVYHGLLPDLFREGKGVVARGRL---------------------GEDGV 113
Query: 121 FSATDVLAKHDEKYMPQEVAAAIEKNKKMLEEQQQE 156
F A +VLAKHDE YMP E A A+ + ++ E+ +E
Sbjct: 114 FVANEVLAKHDENYMPPEAADALRRAVQVNEQMAKE 149
>sp|B7KTL8|CCME_METC4 Cytochrome c-type biogenesis protein CcmE OS=Methylobacterium
chloromethanicum (strain CM4 / NCIMB 13688) GN=ccmE PE=3
SV=1
Length = 173
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 80/155 (51%), Gaps = 29/155 (18%)
Query: 8 IVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLV 67
++L+ +VF+ +P+E Q +FRLGGLV +GSV +EF VTD
Sbjct: 24 LILSAMSGSIVFFRSPAEV--AAQGVAPGTRFRLGGLVKDGSVKR-GPDQNVEFAVTDTN 80
Query: 68 TDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVL 127
+ V+Y+G LPDLFREG +V EG T ++ V F A VL
Sbjct: 81 ATVPVQYRGLLPDLFREGQGIVAEG-----TLDVGGV----------------FRADTVL 119
Query: 128 AKHDEKYMPQEVAAAIEKNKKMLEEQQQEEGGKDS 162
AKHDE YMP+EVA A++ + QE GGKD+
Sbjct: 120 AKHDENYMPREVADALKAQGRW-----QEGGGKDA 149
>sp|A7IFV8|CCME_XANP2 Cytochrome c-type biogenesis protein CcmE OS=Xanthobacter
autotrophicus (strain ATCC BAA-1158 / Py2) GN=ccmE PE=3
SV=1
Length = 159
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 78/149 (52%), Gaps = 28/149 (18%)
Query: 3 AGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFV 62
AG I+ LN D +VF+ +P+E ++ Q P + RLGGLV GSV S + F
Sbjct: 22 AGLILSALN---DTIVFFRSPTEVAQQ-QVAPGA-RLRLGGLVETGSVVK--SGTLTTFK 74
Query: 63 VTDLVTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFS 122
VTD + V Y G LPDLFREG VV EG ++P D F
Sbjct: 75 VTDGNATVKVAYSGILPDLFREGQGVVAEGALQP---------------------DGSFK 113
Query: 123 ATDVLAKHDEKYMPQEVAAAIEKNKKMLE 151
A VLAKHDEKYMP+EVA A++K + E
Sbjct: 114 ADSVLAKHDEKYMPREVADALKKQGRWQE 142
>sp|A9W2K2|CCME_METEP Cytochrome c-type biogenesis protein CcmE OS=Methylobacterium
extorquens (strain PA1) GN=ccmE PE=3 SV=1
Length = 177
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 81/155 (52%), Gaps = 25/155 (16%)
Query: 8 IVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLV 67
++L+ +VF+ +P+E Q P +FRLGGLV +GSV +EF VTD
Sbjct: 24 LILSAMSGSIVFFRSPAEV--AAQGVPPGTRFRLGGLVKDGSVKR-GPDQNVEFAVTDTN 80
Query: 68 TDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVL 127
+ V+Y+G LPDLFREG +V EG T ++ V F A VL
Sbjct: 81 ATVPVQYRGLLPDLFREGQGIVAEG-----TLDVGGV----------------FRADTVL 119
Query: 128 AKHDEKYMPQEVAAAIEKNKKMLEEQQQEEGGKDS 162
AKHDE YMP+EVA A+ K + +E +E KD+
Sbjct: 120 AKHDENYMPREVADAL-KAQGRWQEGGSKEAPKDA 153
>sp|B1ZE84|CCME_METPB Cytochrome c-type biogenesis protein CcmE OS=Methylobacterium
populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001)
GN=ccmE PE=3 SV=1
Length = 169
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 80/155 (51%), Gaps = 29/155 (18%)
Query: 8 IVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLV 67
++L+ +VF+ +P+E Q P +FRLGGLV +GSV +EF VTD
Sbjct: 24 LILSAMSGSIVFFRSPAEVAS--QGVPPGTRFRLGGLVKDGSVKR-GPDQNVEFSVTDTN 80
Query: 68 TDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVL 127
+ V+Y+G LPDLFREG +V EG T + V F A VL
Sbjct: 81 ATVPVQYRGLLPDLFREGQGIVAEG-----TLDAGGV----------------FRADTVL 119
Query: 128 AKHDEKYMPQEVAAAIEKNKKMLEEQQQEEGGKDS 162
AKHDE YMP+EVA A++ + QE GGK++
Sbjct: 120 AKHDENYMPREVADALKAQGRW-----QEGGGKEA 149
>sp|Q223K4|CCME_RHOFD Cytochrome c-type biogenesis protein CcmE OS=Rhodoferax
ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118)
GN=ccmE PE=3 SV=1
Length = 147
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 74/138 (53%), Gaps = 25/138 (18%)
Query: 8 IVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLV 67
+VLN FQ LVF+ +P++ P FR+GGLV EG+V + + FVVTD
Sbjct: 24 LVLNAFQSNLVFFFSPTQVFAG--EAPKNRAFRIGGLVKEGTVKR--DNLTVAFVVTDTA 79
Query: 68 TDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVL 127
++ V Y G LPDLF+EG VV +G + EN F+AT+VL
Sbjct: 80 KEVPVSYTGILPDLFKEGKGVVAQG----------------KLDENGH-----FTATEVL 118
Query: 128 AKHDEKYMPQEVAAAIEK 145
AKHDE YMP E AA+++
Sbjct: 119 AKHDENYMPPEAKAALDQ 136
>sp|B0UMU6|CCME_METS4 Cytochrome c-type biogenesis protein CcmE OS=Methylobacterium sp.
(strain 4-46) GN=ccmE PE=3 SV=1
Length = 163
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 76/144 (52%), Gaps = 24/144 (16%)
Query: 8 IVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLV 67
+VL +VF+ +PSE + + P +FRLGGLV GSV S++ F VTD
Sbjct: 24 LVLWAMSGTIVFFRSPSE-IAREAVAPGV-RFRLGGLVEAGSVVR-GPDSQVTFAVTDNA 80
Query: 68 TDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVL 127
+ VRY+G LPDLFREG VV EG ++P F A VL
Sbjct: 81 ARLPVRYRGLLPDLFREGQGVVAEGAMEP---------------------GGVFRADTVL 119
Query: 128 AKHDEKYMPQEVAAAIEKNKKMLE 151
AKHDE YMP+EVA A++K+ + E
Sbjct: 120 AKHDETYMPREVADALKKSGRWQE 143
>sp|Q69AY8|CCME_GLUDA Cytochrome c-type biogenesis protein CcmE OS=Gluconacetobacter
diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5)
GN=ccmE PE=3 SV=1
Length = 173
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 75/154 (48%), Gaps = 28/154 (18%)
Query: 1 CIAGF---IVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSS 57
C+ G +VLN F +VF++ PS+ + + RLGG+V+ GSV
Sbjct: 14 CLLGLGTATALVLNAFSSNIVFFMAPSQV--RAHPPAADRTIRLGGMVVAGSVRRQTQGD 71
Query: 58 E--MEFVVTDLVTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENAR 115
F VTD + VRY G LPDLFREG SVV G + P
Sbjct: 72 TPIALFDVTDGQAAVTVRYAGILPDLFREGQSVVAVGTVAP------------------- 112
Query: 116 SRDCFFSATDVLAKHDEKYMPQEVAAAIEKNKKM 149
D F A++VLAKHDE YMP+EVA A+ ++ K
Sbjct: 113 --DGAFRASEVLAKHDETYMPKEVAEALRRSGKW 144
>sp|A2SF35|CCME_METPP Cytochrome c-type biogenesis protein CcmE OS=Methylibium
petroleiphilum (strain PM1) GN=ccmE PE=3 SV=1
Length = 154
Score = 93.2 bits (230), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 74/145 (51%), Gaps = 29/145 (20%)
Query: 11 NNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDI 70
N FQ LVF+ +P++ K P FRLGGLV GSV + FVVTD V I
Sbjct: 27 NAFQSNLVFFYSPAQVAAK--EAPVGRAFRLGGLVDGGSVQR--DGLVVRFVVTDTVKSI 82
Query: 71 LVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKH 130
VRYQG LPDLF+EG VV +G + D F A +VLAKH
Sbjct: 83 PVRYQGILPDLFKEGKGVVAQGQL---------------------GDDGVFVAREVLAKH 121
Query: 131 DEKYMPQEVAAAIEK----NKKMLE 151
DE YMP E A A+++ N+K+ E
Sbjct: 122 DENYMPPEAAEALQRAGASNQKLGE 146
>sp|A4XW26|CCME_PSEMY Cytochrome c-type biogenesis protein CcmE OS=Pseudomonas mendocina
(strain ymp) GN=ccmE PE=3 SV=1
Length = 161
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 70/144 (48%), Gaps = 23/144 (15%)
Query: 6 IVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTD 65
+ + L Q+ + + TPS+ P + R GGLV EGSV + E++FVVTD
Sbjct: 23 VALALTALQENINLFYTPSQIANG--EAPEGTRIRAGGLVEEGSVKRSPDTLEVDFVVTD 80
Query: 66 LVTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATD 125
+ +RY G LPDLFREG +V G + + D A +
Sbjct: 81 GAHGVTIRYHGILPDLFREGQGIVALGRV---------------------NEDGVLVADE 119
Query: 126 VLAKHDEKYMPQEVAAAIEKNKKM 149
VLAKHDE YMP EV A+EK+ M
Sbjct: 120 VLAKHDENYMPPEVMQALEKSGMM 143
>sp|Q7WIP4|CCME_BORBR Cytochrome c-type biogenesis protein CcmE OS=Bordetella
bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
GN=ccmE PE=3 SV=1
Length = 153
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 71/144 (49%), Gaps = 23/144 (15%)
Query: 14 QDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVR 73
+ LVF+ +P++ PS FR+GGLV GSV A + FVVTD V ++ V
Sbjct: 31 RSNLVFFFSPTQV--HAHEAPSSGSFRVGGLVRAGSVERAADGLTLRFVVTDTVREVPVA 88
Query: 74 YQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEK 133
Y G LP LFREG VVV G N+ + D F AT+VLAKHDE
Sbjct: 89 YTGLLPALFREGKGVVVAG----------NMGA-----------DGVFRATEVLAKHDEN 127
Query: 134 YMPQEVAAAIEKNKKMLEEQQQEE 157
YMP + A A+ + + Q E
Sbjct: 128 YMPPQAADALRQAGALPSATLQTE 151
>sp|B5ZVF6|CCME_RHILW Cytochrome c-type biogenesis protein CcmE OS=Rhizobium
leguminosarum bv. trifolii (strain WSM2304) GN=ccmE PE=3
SV=1
Length = 171
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 89/164 (54%), Gaps = 27/164 (16%)
Query: 2 IAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEF 61
IA +++V+ F + ++ P++ L K P + + RLGGLV EGSV A S+ +EF
Sbjct: 18 IAAAVLLVMFAFSQSVAYFYMPAD-LAKTPVAP-ETRIRLGGLVGEGSVVRGAGST-VEF 74
Query: 62 VVTDLVTD-ILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCF 120
VTD + + V+Y G LPDLFREG VV EG P T NV
Sbjct: 75 SVTDGSANAVKVKYTGILPDLFREGQGVVTEGMFAPGT----NV---------------- 114
Query: 121 FSATDVLAKHDEKYMPQEVAAAIEKNKKMLEEQQ--QEEGGKDS 162
F+A VLAKHDE YMP++VA + K + + +E Q QE GK+
Sbjct: 115 FTADTVLAKHDETYMPKDVADRL-KQQGLWKEGQGGQESPGKEG 157
>sp|Q2VZH2|CCME_MAGSA Cytochrome c-type biogenesis protein CcmE OS=Magnetospirillum
magneticum (strain AMB-1 / ATCC 700264) GN=ccmE PE=3
SV=1
Length = 148
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 82/157 (52%), Gaps = 25/157 (15%)
Query: 1 CIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEME 60
+ G + +VL D LV++ +P++ + Q P + R+GGLV SV + +
Sbjct: 17 ALGGAVALVLTAISDSLVYFYSPTDIVS--QRIPEGRRMRIGGLVENDSVVKDGKT--VT 72
Query: 61 FVVTDLVTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCF 120
F VTD+ + V Y G LPDLFREG VVVEG ++
Sbjct: 73 FKVTDVTNAVPVVYTGVLPDLFREGQGVVVEGRMEA---------------------GGH 111
Query: 121 FSATDVLAKHDEKYMPQEVAAAIEKNKKMLEEQQQEE 157
F A++VLAKHDE YMP+EVA A++K+ + + +Q ++
Sbjct: 112 FKASEVLAKHDENYMPKEVAEALKKSGQWNDGKQPKQ 148
>sp|A9M9N4|CCME_BRUC2 Cytochrome c-type biogenesis protein CcmE OS=Brucella canis (strain
ATCC 23365 / NCTC 10854) GN=ccmE PE=3 SV=1
Length = 165
Score = 89.7 bits (221), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 75/140 (53%), Gaps = 25/140 (17%)
Query: 6 IVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTD 65
+ ++L F + F+ TP++ E Q S +FRLGGLV EGSV+ + SE+ F VTD
Sbjct: 44 VGLMLTAFNQDIRFFRTPADLTE--QDMTSGARFRLGGLVEEGSVSR--TGSELRFTVTD 99
Query: 66 LVTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATD 125
+ + V ++G PDLFREG VV EG D F A +
Sbjct: 100 TIKTVKVVFEGIPPDLFREGQGVVAEGRF---------------------GSDGLFRADN 138
Query: 126 VLAKHDEKYMPQEVAAAIEK 145
VLAKHDE Y+P+++A +++K
Sbjct: 139 VLAKHDENYVPKDLANSLKK 158
>sp|Q8GQ96|CCME_PSEAI Cytochrome c-type biogenesis protein CcmE OS=Pseudomonas aeruginosa
GN=ccmE PE=3 SV=1
Length = 148
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 71/141 (50%), Gaps = 23/141 (16%)
Query: 8 IVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLV 67
+VLN FQ LVF+ TPS+ P + FR+GG+V GS+ ++FV+TD V
Sbjct: 24 LVLNAFQSNLVFFFTPSQV--SAGEAPLERTFRVGGMVERGSLKRQRGELAVQFVITDTV 81
Query: 68 TDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVL 127
I V Y G LPDLF EG VVV+G + F A +VL
Sbjct: 82 KAIPVTYSGILPDLFSEGKGVVVQGRL---------------------DSAGLFRAEEVL 120
Query: 128 AKHDEKYMPQEVAAAIEKNKK 148
AKHDE YMP E A+++ +K
Sbjct: 121 AKHDENYMPPEAQHALDEVQK 141
>sp|Q8G1U5|CCME_BRUSU Cytochrome c-type biogenesis protein CcmE OS=Brucella suis biovar 1
(strain 1330) GN=ccmE PE=3 SV=1
Length = 165
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 75/140 (53%), Gaps = 25/140 (17%)
Query: 6 IVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTD 65
+ ++L F + F+ TP++ E Q S +FRLGGLV EGSV+ + SE+ F VTD
Sbjct: 44 VGLMLTAFNQDIRFFRTPADLTE--QDMTSGARFRLGGLVEEGSVSR--TGSELRFTVTD 99
Query: 66 LVTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATD 125
+ + V ++G PDLFREG VV EG D F A +
Sbjct: 100 TIKTVKVVFEGIPPDLFREGQGVVAEGRF---------------------GSDGLFRADN 138
Query: 126 VLAKHDEKYMPQEVAAAIEK 145
VLAKHDE Y+P+++A +++K
Sbjct: 139 VLAKHDENYVPKDLADSLKK 158
>sp|B0CKT7|CCME_BRUSI Cytochrome c-type biogenesis protein CcmE OS=Brucella suis (strain
ATCC 23445 / NCTC 10510) GN=ccmE PE=3 SV=1
Length = 165
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 75/140 (53%), Gaps = 25/140 (17%)
Query: 6 IVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTD 65
+ ++L F + F+ TP++ E Q S +FRLGGLV EGSV+ + SE+ F VTD
Sbjct: 44 VGLMLTAFNQDIRFFRTPADLTE--QDMTSGARFRLGGLVEEGSVSR--TGSELRFTVTD 99
Query: 66 LVTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATD 125
+ + V ++G PDLFREG VV EG D F A +
Sbjct: 100 TIKTVKVVFEGIPPDLFREGQGVVAEGRF---------------------GSDGLFRADN 138
Query: 126 VLAKHDEKYMPQEVAAAIEK 145
VLAKHDE Y+P+++A +++K
Sbjct: 139 VLAKHDENYVPKDLADSLKK 158
>sp|A5VPF4|CCME_BRUO2 Cytochrome c-type biogenesis protein CcmE OS=Brucella ovis (strain
ATCC 25840 / 63/290 / NCTC 10512) GN=ccmE PE=3 SV=1
Length = 165
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 75/140 (53%), Gaps = 25/140 (17%)
Query: 6 IVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTD 65
+ ++L F + F+ TP++ E Q S +FRLGGLV EGSV+ + SE+ F VTD
Sbjct: 44 VGLMLTAFNQDIRFFRTPADLTE--QDMTSGARFRLGGLVEEGSVSR--TGSELRFTVTD 99
Query: 66 LVTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATD 125
+ + V ++G PDLFREG VV EG D F A +
Sbjct: 100 TIKTVKVVFEGIPPDLFREGQGVVAEGRF---------------------GSDGLFRADN 138
Query: 126 VLAKHDEKYMPQEVAAAIEK 145
VLAKHDE Y+P+++A +++K
Sbjct: 139 VLAKHDENYVPKDLADSLKK 158
>sp|Q8YG29|CCME_BRUME Cytochrome c-type biogenesis protein CcmE OS=Brucella melitensis
biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=ccmE
PE=3 SV=1
Length = 165
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 75/140 (53%), Gaps = 25/140 (17%)
Query: 6 IVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTD 65
+ ++L F + F+ TP++ E Q S +FRLGGLV EGSV+ + SE+ F VTD
Sbjct: 44 VGLMLTAFNQDIRFFRTPADLTE--QDMTSGARFRLGGLVEEGSVSR--TGSELRFTVTD 99
Query: 66 LVTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATD 125
+ + V ++G PDLFREG VV EG D F A +
Sbjct: 100 TIKTVKVVFEGIPPDLFREGQGVVAEGRF---------------------GSDGLFRADN 138
Query: 126 VLAKHDEKYMPQEVAAAIEK 145
VLAKHDE Y+P+++A +++K
Sbjct: 139 VLAKHDENYVPKDLADSLKK 158
>sp|C0RHV4|CCME_BRUMB Cytochrome c-type biogenesis protein CcmE OS=Brucella melitensis
biotype 2 (strain ATCC 23457) GN=ccmE PE=3 SV=1
Length = 165
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 75/140 (53%), Gaps = 25/140 (17%)
Query: 6 IVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTD 65
+ ++L F + F+ TP++ E Q S +FRLGGLV EGSV+ + SE+ F VTD
Sbjct: 44 VGLMLTAFNQDIRFFRTPADLTE--QDMTSGARFRLGGLVEEGSVSR--TGSELRFTVTD 99
Query: 66 LVTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATD 125
+ + V ++G PDLFREG VV EG D F A +
Sbjct: 100 TIKTVKVVFEGIPPDLFREGQGVVAEGRF---------------------GSDGLFRADN 138
Query: 126 VLAKHDEKYMPQEVAAAIEK 145
VLAKHDE Y+P+++A +++K
Sbjct: 139 VLAKHDENYVPKDLADSLKK 158
>sp|Q57ED2|CCME_BRUAB Cytochrome c-type biogenesis protein CcmE OS=Brucella abortus
biovar 1 (strain 9-941) GN=ccmE PE=3 SV=1
Length = 165
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 75/140 (53%), Gaps = 25/140 (17%)
Query: 6 IVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTD 65
+ ++L F + F+ TP++ E Q S +FRLGGLV EGSV+ + SE+ F VTD
Sbjct: 44 VGLMLTAFNQDIRFFRTPADLTE--QDMTSGARFRLGGLVEEGSVSR--TGSELRFTVTD 99
Query: 66 LVTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATD 125
+ + V ++G PDLFREG VV EG D F A +
Sbjct: 100 TIKTVKVVFEGIPPDLFREGQGVVAEGRF---------------------GSDGLFRADN 138
Query: 126 VLAKHDEKYMPQEVAAAIEK 145
VLAKHDE Y+P+++A +++K
Sbjct: 139 VLAKHDENYVPKDLADSLKK 158
>sp|Q2YMU7|CCME_BRUA2 Cytochrome c-type biogenesis protein CcmE OS=Brucella abortus
(strain 2308) GN=ccmE PE=3 SV=1
Length = 165
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 75/140 (53%), Gaps = 25/140 (17%)
Query: 6 IVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTD 65
+ ++L F + F+ TP++ E Q S +FRLGGLV EGSV+ + SE+ F VTD
Sbjct: 44 VGLMLTAFNQDIRFFRTPADLTE--QDMTSGARFRLGGLVEEGSVSR--TGSELRFTVTD 99
Query: 66 LVTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATD 125
+ + V ++G PDLFREG VV EG D F A +
Sbjct: 100 TIKTVKVVFEGIPPDLFREGQGVVAEGRF---------------------GSDGLFRADN 138
Query: 126 VLAKHDEKYMPQEVAAAIEK 145
VLAKHDE Y+P+++A +++K
Sbjct: 139 VLAKHDENYVPKDLADSLKK 158
>sp|B2SA93|CCME_BRUA1 Cytochrome c-type biogenesis protein CcmE OS=Brucella abortus
(strain S19) GN=ccmE PE=3 SV=1
Length = 165
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 75/140 (53%), Gaps = 25/140 (17%)
Query: 6 IVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTD 65
+ ++L F + F+ TP++ E Q S +FRLGGLV EGSV+ + SE+ F VTD
Sbjct: 44 VGLMLTAFNQDIRFFRTPADLTE--QDMTSGARFRLGGLVEEGSVSR--TGSELRFTVTD 99
Query: 66 LVTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATD 125
+ + V ++G PDLFREG VV EG D F A +
Sbjct: 100 TIKTVKVVFEGIPPDLFREGQGVVAEGRF---------------------GSDGLFRADN 138
Query: 126 VLAKHDEKYMPQEVAAAIEK 145
VLAKHDE Y+P+++A +++K
Sbjct: 139 VLAKHDENYVPKDLADSLKK 158
>sp|Q7W740|CCME_BORPA Cytochrome c-type biogenesis protein CcmE OS=Bordetella
parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)
GN=ccmE PE=3 SV=1
Length = 153
Score = 89.4 bits (220), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 69/144 (47%), Gaps = 23/144 (15%)
Query: 14 QDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVR 73
+ LVF+ +P++ PS FR+GGLV GSV A + FVVTD V ++ V
Sbjct: 31 RSNLVFFFSPTQV--HAHEAPSSGSFRVGGLVRAGSVERAADGLTLRFVVTDTVREVPVA 88
Query: 74 YQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEK 133
Y G LP LFREG VVV G + D F AT+VLAKH+E
Sbjct: 89 YTGLLPALFREGKGVVVAGTM---------------------GADGVFRATEVLAKHNEN 127
Query: 134 YMPQEVAAAIEKNKKMLEEQQQEE 157
YMP + A A+ + + Q E
Sbjct: 128 YMPPQAADALRQAGALPSATLQTE 151
>sp|B3QBQ3|CCME_RHOPT Cytochrome c-type biogenesis protein CcmE OS=Rhodopseudomonas
palustris (strain TIE-1) GN=ccmE PE=3 SV=1
Length = 167
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 73/141 (51%), Gaps = 24/141 (17%)
Query: 6 IVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTD 65
+ +VLN +D +VF+ TP E Q + +FRLGG+V GS+ + F VTD
Sbjct: 22 VGLVLNALRDSIVFFSTPKMVAE--QHIEAGKRFRLGGVVEPGSLQR-GEQLRVSFKVTD 78
Query: 66 LVTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATD 125
+ V Y+G LPDLFREG V+ EG + + F A
Sbjct: 79 GAASLPVAYKGILPDLFREGQGVIAEGSL---------------------DKAGVFEADT 117
Query: 126 VLAKHDEKYMPQEVAAAIEKN 146
VLAKHDEKYMP+EVA A++K+
Sbjct: 118 VLAKHDEKYMPKEVADALKKD 138
>sp|Q6N8I3|CCME_RHOPA Cytochrome c-type biogenesis protein CcmE OS=Rhodopseudomonas
palustris (strain ATCC BAA-98 / CGA009) GN=ccmE PE=3
SV=1
Length = 167
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 73/141 (51%), Gaps = 24/141 (17%)
Query: 6 IVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTD 65
+ +VLN +D +VF+ TP E Q + +FRLGG+V GS+ + F VTD
Sbjct: 22 VGLVLNALRDSIVFFSTPKMVAE--QHIEAGKRFRLGGVVEPGSLQR-GEQLRVSFKVTD 78
Query: 66 LVTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATD 125
+ V Y+G LPDLFREG V+ EG + + F A
Sbjct: 79 GAASLPVAYKGILPDLFREGQGVIAEGSL---------------------DKAGVFEADT 117
Query: 126 VLAKHDEKYMPQEVAAAIEKN 146
VLAKHDEKYMP+EVA A++K+
Sbjct: 118 VLAKHDEKYMPKEVADALKKD 138
>sp|A1VJS8|CCME_POLNA Cytochrome c-type biogenesis protein CcmE OS=Polaromonas
naphthalenivorans (strain CJ2) GN=ccmE PE=3 SV=1
Length = 149
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 68/133 (51%), Gaps = 23/133 (17%)
Query: 13 FQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILV 72
FQ LVF+ TPS+ P FR+GG+V GS+ A + F+VTD + V
Sbjct: 29 FQKNLVFFFTPSQVAAG--EAPRNRSFRVGGMVEVGSIERQADGVTVSFLVTDTAQRLRV 86
Query: 73 RYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDE 132
Y+GSLPDLF+EG VV +G + + D F A +VLAKHDE
Sbjct: 87 NYRGSLPDLFKEGKGVVAQGKL---------------------TADQLFVADEVLAKHDE 125
Query: 133 KYMPQEVAAAIEK 145
YMP E A A+++
Sbjct: 126 NYMPPEAAYALKQ 138
>sp|A4YRM0|CCME_BRASO Cytochrome c-type biogenesis protein CcmE OS=Bradyrhizobium sp.
(strain ORS278) GN=ccmE PE=3 SV=1
Length = 171
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 76/151 (50%), Gaps = 24/151 (15%)
Query: 8 IVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLV 67
+VLN +D +VF+ TP+ EK+ + P K +FRLGGLV GS+ + F V D
Sbjct: 24 LVLNALRDSIVFFSTPTMVAEKHVA-PGK-RFRLGGLVQPGSLKR-GDDLAVTFEVADGG 80
Query: 68 TDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVL 127
+ V Y+G LPDLFREG VV EG A F A VL
Sbjct: 81 AKLPVAYKGILPDLFREGQGVVAEG---------------------ALDASGVFKADTVL 119
Query: 128 AKHDEKYMPQEVAAAIEKNKKMLEEQQQEEG 158
AKHDE YMP+EVA ++K ++ + +G
Sbjct: 120 AKHDETYMPKEVADTLKKQGHWKDDYGKPQG 150
>sp|Q3STD7|CCME_NITWN Cytochrome c-type biogenesis protein CcmE OS=Nitrobacter
winogradskyi (strain Nb-255 / ATCC 25391) GN=ccmE PE=3
SV=1
Length = 162
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 78/155 (50%), Gaps = 24/155 (15%)
Query: 8 IVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLV 67
+VLN +D +VF+ TP EK+ P + +FRLGGLV GS+ + + F V+D
Sbjct: 24 LVLNALRDSIVFFSTPMMVSEKH-IQPGQ-RFRLGGLVQTGSLVR-GDNLAVSFRVSDGS 80
Query: 68 TDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVL 127
+ V Y+G LPDLFREG VV EG A F A VL
Sbjct: 81 ATLPVSYKGILPDLFREGQGVVAEG---------------------ALDNSGVFQADTVL 119
Query: 128 AKHDEKYMPQEVAAAIEKNKKMLEEQQQEEGGKDS 162
AKHDE YMP+EVA A++K ++ + G ++
Sbjct: 120 AKHDETYMPKEVADALKKQGHWKDDYGAQPGAAEA 154
>sp|B1XVV8|CCME_POLNS Cytochrome c-type biogenesis protein CcmE OS=Polynucleobacter
necessarius subsp. necessarius (strain STIR1) GN=ccmE
PE=3 SV=1
Length = 144
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 73/142 (51%), Gaps = 25/142 (17%)
Query: 7 VIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDL 66
+++LN + YVTPSE P FR+GG+V +GS+ + + FV+TDL
Sbjct: 23 LLILNALNSNIALYVTPSEVAAG--KAPQGQAFRIGGMVKDGSLKRDGLT--VHFVITDL 78
Query: 67 VTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDV 126
DI V Y G LPDLF+EG V++G + N E F A++V
Sbjct: 79 AKDIPVAYIGILPDLFKEGKGAVIQGRM--------NANGE-------------FIASEV 117
Query: 127 LAKHDEKYMPQEVAAAIEKNKK 148
LAKHDE YMP E A+++ +K
Sbjct: 118 LAKHDENYMPPEAKHALDQAQK 139
>sp|A4VMK0|CCME_PSEU5 Cytochrome c-type biogenesis protein CcmE OS=Pseudomonas stutzeri
(strain A1501) GN=ccmE PE=3 SV=1
Length = 155
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 73/155 (47%), Gaps = 27/155 (17%)
Query: 6 IVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTD 65
+ + L+ Q + + TPS+ P + R GGLV EGSV S + F VTD
Sbjct: 23 VALALSALQQNINLFYTPSQIAAG--EAPEGTRIRAGGLVEEGSVKRTNDSLSVAFRVTD 80
Query: 66 LVTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATD 125
I + YQG LPDLFREG +V G + NA D A +
Sbjct: 81 GAQAITITYQGILPDLFREGQGIVALGRV------------------NA---DGVLVADE 119
Query: 126 VLAKHDEKYMPQEVAAAIEKNKKMLEEQQQEEGGK 160
VLAKHDE YMP EV A+EK+ M + EGGK
Sbjct: 120 VLAKHDENYMPPEVTQALEKSGMM----KHYEGGK 150
>sp|B9JU45|CCME_AGRVS Cytochrome c-type biogenesis protein CcmE OS=Agrobacterium vitis
(strain S4 / ATCC BAA-846) GN=ccmE PE=3 SV=1
Length = 149
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 70/141 (49%), Gaps = 23/141 (16%)
Query: 6 IVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTD 65
+++VL F + ++ PS+ L K P + RLGGLV EGSV S+ + F VTD
Sbjct: 22 VLLVLFAFGQSIAYFYMPSD-LAKTPVGPG-TRIRLGGLVAEGSVKRDTGST-VSFAVTD 78
Query: 66 LVTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATD 125
+ V Y G LPDLFREG VV EG + F A
Sbjct: 79 GTATVPVTYTGILPDLFREGQGVVTEGVFG--------------------AGGTLFDADT 118
Query: 126 VLAKHDEKYMPQEVAAAIEKN 146
VLAKHDE YMP+EVA ++K+
Sbjct: 119 VLAKHDENYMPKEVADRMKKD 139
>sp|B2IGT8|CCME_BEII9 Cytochrome c-type biogenesis protein CcmE OS=Beijerinckia indica
subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712)
GN=ccmE PE=3 SV=1
Length = 160
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 78/149 (52%), Gaps = 24/149 (16%)
Query: 6 IVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTD 65
+ ++L D +VF+ P+E EK +P + R+GGLV GS+ A + + F+VTD
Sbjct: 22 VGLILFALSDNIVFFYGPTELAEK-APHPGA-RLRIGGLVKPGSLEREAGQT-VHFIVTD 78
Query: 66 LVTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATD 125
D+ V Y G LPDLFREG VV EG + + E R A
Sbjct: 79 NKHDVAVTYTGLLPDLFREGQGVVTEGTL--------------TGKETLR-------ADS 117
Query: 126 VLAKHDEKYMPQEVAAAIEKNKKMLEEQQ 154
VLAKHDE+YMP+EVA A++K E+ Q
Sbjct: 118 VLAKHDERYMPREVADALKKQGVWQEDGQ 146
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,533,283
Number of Sequences: 539616
Number of extensions: 2158252
Number of successful extensions: 6754
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 6039
Number of HSP's gapped (non-prelim): 336
length of query: 162
length of database: 191,569,459
effective HSP length: 108
effective length of query: 54
effective length of database: 133,290,931
effective search space: 7197710274
effective search space used: 7197710274
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)