Query 041604
Match_columns 162
No_of_seqs 113 out of 607
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 15:02:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041604.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041604hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j6q_A Cytochrome C maturation 100.0 4.5E-43 1.5E-47 273.7 11.8 125 10-155 2-131 (136)
2 1sr3_A APO-CCME; OB fold, beta 100.0 6.9E-42 2.4E-46 267.2 10.3 118 13-151 1-122 (136)
3 2kct_A Cytochrome C-type bioge 100.0 2E-29 7E-34 186.0 13.0 83 33-135 5-90 (94)
4 4gop_B Putative uncharacterize 86.5 4 0.00014 30.0 8.1 71 21-95 12-98 (136)
5 3kdf_D Replication protein A 3 85.6 4 0.00014 29.8 7.8 71 21-95 9-93 (132)
6 2k50_A Replication factor A re 84.1 7.7 0.00026 27.2 8.4 60 35-94 15-83 (115)
7 3e0e_A Replication protein A; 78.6 9.2 0.00032 26.6 7.1 60 36-95 11-77 (97)
8 3m4p_A Ehasnrs, asparaginyl-tR 78.4 36 0.0012 30.2 13.3 87 34-131 28-123 (456)
9 1o7i_A SSB, SSO2364, single st 78.3 16 0.00054 26.1 8.5 60 36-95 12-77 (119)
10 2pi2_A Replication protein A 3 77.4 11 0.00037 30.9 8.2 73 19-95 47-133 (270)
11 1n9w_A Aspartyl-tRNA synthetas 76.9 37 0.0013 29.7 11.9 54 35-96 12-67 (422)
12 2pi2_E Replication protein A 1 76.8 23 0.00077 27.0 10.7 84 15-133 27-111 (142)
13 3kdf_A Replication protein A 1 74.2 24 0.00081 26.0 11.9 69 15-96 6-75 (121)
14 3au7_A TIAS, putative uncharac 70.1 25 0.00086 31.2 9.2 72 34-129 282-359 (402)
15 3dm3_A Replication factor A; p 69.4 27 0.00094 24.7 9.0 60 36-95 14-80 (105)
16 1c0a_A Aspartyl tRNA synthetas 69.1 26 0.0009 32.0 9.4 85 35-131 14-106 (585)
17 4gop_A Putative uncharacterize 68.3 32 0.0011 25.0 9.7 65 17-96 4-69 (114)
18 1eov_A ASPRS, aspartyl-tRNA sy 66.3 67 0.0023 28.6 11.3 70 20-96 23-104 (487)
19 2xgt_A Asparaginyl-tRNA synthe 62.3 31 0.0011 30.2 8.2 57 35-95 10-72 (435)
20 4hsp_A Hypothetical protein; P 60.8 19 0.00066 28.0 5.9 58 34-96 52-123 (150)
21 1l0w_A Aspartyl-tRNA synthetas 58.3 1.1E+02 0.0038 27.9 11.7 56 35-95 15-76 (580)
22 1wyd_A Hypothetical aspartyl-t 57.0 1E+02 0.0034 27.0 11.2 57 35-96 15-77 (429)
23 3b9c_A HSPC159; beta sandwich, 56.7 9.5 0.00033 28.5 3.5 27 70-96 8-34 (144)
24 3bju_A Lysyl-tRNA synthetase; 54.6 1.2E+02 0.0041 27.2 11.9 71 21-95 35-121 (521)
25 3i7f_A Aspartyl-tRNA synthetas 54.1 1.1E+02 0.0038 28.0 10.7 97 19-134 49-157 (548)
26 4ah6_A Aspartate--tRNA ligase, 53.3 70 0.0024 29.7 9.3 63 22-95 14-84 (617)
27 1e1o_A Lysyl-tRNA synthetase, 50.9 1.4E+02 0.0047 26.8 11.5 70 21-95 43-128 (504)
28 3nem_A Aspartyl-tRNA synthetas 50.8 1.3E+02 0.0044 26.4 11.3 57 35-96 15-80 (438)
29 3a74_A Lysyl-tRNA synthetase; 50.0 74 0.0025 28.4 8.7 69 22-95 36-119 (493)
30 2kbn_A Conserved protein; nucl 49.9 64 0.0022 22.7 8.9 60 35-95 14-75 (109)
31 1txy_A Primosomal replication 49.0 64 0.0022 22.4 6.7 60 37-96 3-80 (104)
32 3ts2_A Protein LIN-28 homolog 48.9 82 0.0028 23.6 7.9 54 37-95 6-70 (148)
33 1qzg_A Protection of telomeres 45.5 1.1E+02 0.0038 24.4 8.2 73 19-94 28-113 (187)
34 2k75_A Uncharacterized protein 45.2 77 0.0026 22.2 7.8 57 36-95 13-74 (106)
35 1nnx_A Protein YGIW; structura 40.5 1E+02 0.0036 22.4 7.0 64 21-95 26-91 (109)
36 1whm_A Cylindromatosis tumor s 39.4 25 0.00087 25.4 3.3 48 69-134 26-73 (92)
37 3zxf_A Galectin-7; sugar bindi 38.4 25 0.00087 25.8 3.2 26 71-96 5-30 (138)
38 3nv1_A Galectin-9, galectin 9 37.8 31 0.0011 25.3 3.7 28 69-96 5-32 (138)
39 3e0j_A DNA polymerase subunit 37.1 1.2E+02 0.004 27.4 7.9 47 59-127 138-184 (476)
40 3zsj_A Galectin-3; sugar bindi 36.6 15 0.00051 27.1 1.7 27 70-96 2-28 (138)
41 1c9o_A CSPB, cold-shock protei 36.3 86 0.0029 20.2 6.4 48 48-95 4-54 (66)
42 3vkl_A Galectin-8; beta-sandwi 35.8 28 0.00097 28.8 3.5 27 70-96 157-183 (291)
43 3stb_C RNA-editing complex pro 34.8 21 0.00072 27.7 2.4 62 35-96 43-119 (148)
44 3i8t_A Galectin-4; S-type lect 34.1 37 0.0013 26.0 3.7 26 71-96 28-53 (164)
45 3flo_A DNA polymerase alpha su 33.8 1.1E+02 0.0037 27.5 7.1 73 35-128 45-122 (460)
46 3ap9_A Galectin-8; beta-sandwi 33.4 35 0.0012 25.5 3.4 26 71-96 16-41 (154)
47 1g6p_A Cold shock protein TMCS 32.9 74 0.0025 20.6 4.6 48 48-95 3-53 (66)
48 2d6m_A Galectin-9, lectin, gal 32.3 43 0.0015 25.3 3.7 27 70-96 15-41 (159)
49 2yro_A Galectin-8; GAL-BIND le 32.3 41 0.0014 25.3 3.6 28 69-96 14-41 (155)
50 2xvs_A Tetratricopeptide repea 29.4 1.3E+02 0.0046 23.6 6.2 63 21-90 64-128 (166)
51 3i2z_B RNA chaperone, negative 28.3 1.3E+02 0.0044 19.7 6.4 47 49-95 9-59 (71)
52 3kf6_A Protein STN1; OB fold, 28.1 1.7E+02 0.0058 22.3 6.5 56 36-95 47-110 (159)
53 2zhn_A Galectin-9; beta sandwi 27.9 36 0.0012 25.2 2.6 23 72-94 15-37 (148)
54 3mxn_B RECQ-mediated genome in 27.1 2.2E+02 0.0077 22.2 9.1 67 37-129 59-128 (150)
55 3ft1_A PHL P 3 allergen; beta- 27.0 56 0.0019 23.4 3.4 29 58-87 64-92 (100)
56 2hpi_A DNA polymerase III alph 25.4 1.1E+02 0.0039 30.7 6.2 62 35-96 1041-1107(1220)
57 3k8a_A Putative primosomal rep 24.5 99 0.0034 21.9 4.3 76 37-127 8-99 (103)
58 2k5n_A Putative cold-shock pro 24.0 1.6E+02 0.0056 19.6 7.2 63 48-132 5-68 (74)
59 2jnz_A PHL P 3 allergen; timot 23.7 75 0.0026 23.2 3.6 29 58-87 75-103 (108)
60 3aqq_A Calcium-regulated heat 23.6 1E+02 0.0035 23.6 4.4 46 46-91 63-110 (147)
61 1gm5_A RECG; helicase, replica 23.3 71 0.0024 30.0 4.2 62 35-96 164-229 (780)
62 1x50_A Galectin-4; GAL-BIND le 23.2 55 0.0019 24.9 2.9 26 71-96 26-51 (164)
63 1xjv_A Protection of telomeres 22.4 3.1E+02 0.011 22.2 7.6 60 35-94 14-80 (294)
64 3fhw_A Primosomal replication 22.3 2.3E+02 0.0077 20.5 6.2 59 37-96 2-78 (115)
65 1pm4_A YPM; jelly roll fold, t 22.2 17 0.00058 27.0 -0.2 8 124-131 111-118 (119)
66 1qvc_A Single stranded DNA bin 20.7 2.2E+02 0.0076 20.9 5.8 60 37-96 6-85 (145)
67 4ex5_A Lysine--tRNA ligase; st 20.3 3.5E+02 0.012 24.4 8.0 55 36-95 86-149 (529)
No 1
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=100.00 E-value=4.5e-43 Score=273.66 Aligned_cols=125 Identities=40% Similarity=0.659 Sum_probs=88.7
Q ss_pred HHHhhcCeeeeeCHHHHHhhcCC----CCCCCcEEEeEEEecCcEEecCCCceEEEEEEe-CCeEEEEEEcCCCCCCCCC
Q 041604 10 LNNFQDQLVFYVTPSEALEKYQS----NPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTD-LVTDILVRYQGSLPDLFRE 84 (162)
Q Consensus 10 l~~~~~~~~yy~tpsE~~~~~~~----~~~~~~vrv~G~V~~gSv~~~~~~~~~~F~vtD-~~~~i~V~Y~G~~Pd~F~e 84 (162)
+++|++|++||+||||+++..++ .+.+++|||+|+|++|||.|+++++.++|.|+| ...+|+|+|+|++||+|+|
T Consensus 2 ~~al~~ni~~f~tpsei~~~~~~~~~~~~~g~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~~~~~v~V~Y~GilPDlFrE 81 (136)
T 1j6q_A 2 AADLNSNLNLFYTPSEIVNGKTDTGVKPEAGQRIRVGGMVTVGSMVRDPNSLHVQFAVHDSLGGEILVTYDDLLPDLFRE 81 (136)
T ss_dssp -----CCCCCEECTTTTTTTSTTTTSSSCTTCEEEEEEEECTTCCEECTTSSCEEEEEECTTCCCEEEEECSCCTTSCCS
T ss_pred cchhhhCccEeeCHHHHHcCcccccccCCCCCEEEEeEEEeCCcEEecCCCCEEEEEEEcCCCCEEEEEECCCCCccccC
Confidence 67999999999999999976421 368899999999999999998888999999999 8899999999999999999
Q ss_pred CCeEEEEEEEcCchhhhhhccccccccccccCCCCeEEEeEEeecCCCCCCChHHHHHHHHhhhhhHHHHh
Q 041604 85 GHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEKNKKMLEEQQQ 155 (162)
Q Consensus 85 g~~VVveG~~~~~~~~~~~~~~~~~~~~~~~~~dg~F~A~~lLaKcpskY~p~eva~~~~~~~~~~~~~~~ 155 (162)
|++|||+|+|++ +|+|+|++|||||||||||+|++++|++++....+.+|
T Consensus 82 GqgVVa~G~l~~---------------------~g~F~A~eVLaKhdekY~p~eva~al~~~~~~~~~~~~ 131 (136)
T 1j6q_A 82 GQGIVAQGVLGE---------------------DGKLAATEVLAKHDENYMPPEVAEAMGQKHEKLDYSQQ 131 (136)
T ss_dssp SSEEEEEEEECS---------------------TTSEEEEEEECCC-------------------------
T ss_pred CCeEEEEEEECC---------------------CCeEEEEEEEecCCCCCCCHHHHHHHHHhccCcchhhh
Confidence 999999999985 79999999999999999999999999999766655554
No 2
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=100.00 E-value=6.9e-42 Score=267.18 Aligned_cols=118 Identities=37% Similarity=0.618 Sum_probs=102.6
Q ss_pred hhcCeeeeeCHHHHHhhcC----CCCCCCcEEEeEEEecCcEEecCCCceEEEEEEeCCeEEEEEEcCCCCCCCCCCCeE
Q 041604 13 FQDQLVFYVTPSEALEKYQ----SNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYQGSLPDLFREGHSV 88 (162)
Q Consensus 13 ~~~~~~yy~tpsE~~~~~~----~~~~~~~vrv~G~V~~gSv~~~~~~~~~~F~vtD~~~~i~V~Y~G~~Pd~F~eg~~V 88 (162)
|++|++||+||||+++..+ +.+.+++|||+|+|++|||.|+++++.++|.|+|...+|+|+|+|+|||+|+||++|
T Consensus 1 l~~ni~~F~tPSEi~~~~~~~~~~~~~g~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~~~~v~V~Y~GilPDlFrEGqgV 80 (136)
T 1sr3_A 1 LRSNIDLFYTPGEILYGKRETQQMPEVGQRLRVGGMVMPGSVQRDPNSLKVTFTIYDAEGSVDVSYEGILPDLFREGQGV 80 (136)
T ss_dssp CCCSSSCCBCTTTTTSCSTTTSCCCCTTSEEEEEEEECTTTCEECSSSSEEEEEEECSSCEEEEEEESCCCTTCCTTSEE
T ss_pred CCCcccEEeCHHHHhcCcccccccCCCCCEEEEeeEEeCCcEEEcCCCCEEEEEEEeCCcEEEEEECCCCCccccCCCeE
Confidence 5689999999999987642 146789999999999999999888899999999999999999999999999999999
Q ss_pred EEEEEEcCchhhhhhccccccccccccCCCCeEEEeEEeecCCCCCCChHHHHHHHHhhhhhH
Q 041604 89 VVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEKNKKMLE 151 (162)
Q Consensus 89 VveG~~~~~~~~~~~~~~~~~~~~~~~~~dg~F~A~~lLaKcpskY~p~eva~~~~~~~~~~~ 151 (162)
||+|+|++ +|+|.|++|||||||||||+|++++|+++++.+.
T Consensus 81 Va~G~l~~---------------------~g~F~A~eVLAKhdekYmp~eva~al~~~~~~~~ 122 (136)
T 1sr3_A 81 VVQGELEK---------------------GNHILAKEVLAKHDENYTPPEVEKAMEANHRRPA 122 (136)
T ss_dssp EEEEEECS---------------------SSEEEESSCBCCSCCCCCCHHHHTCC--------
T ss_pred EEEEEECC---------------------CCeEEEEEEEecCCCCCCCHHHHHHHHHhccCcc
Confidence 99999985 7999999999999999999999999998864443
No 3
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=99.96 E-value=2e-29 Score=186.00 Aligned_cols=83 Identities=24% Similarity=0.388 Sum_probs=75.8
Q ss_pred CCCCCcEEEeEEEecCcEEecCCCceEEEEEEeC---CeEEEEEEcCCCCCCCCCCCeEEEEEEEcCchhhhhhcccccc
Q 041604 33 NPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDL---VTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKS 109 (162)
Q Consensus 33 ~~~~~~vrv~G~V~~gSv~~~~~~~~~~F~vtD~---~~~i~V~Y~G~~Pd~F~eg~~VVveG~~~~~~~~~~~~~~~~~ 109 (162)
.+.+++|||+|+|++|||.|.+++..++|.|+|. ..+|+|+|+|+|||+|+||++||++|+|++.
T Consensus 5 ~~~~~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~~~~~~~v~V~Y~GilPDlFrEGqgVV~~G~l~~~------------ 72 (94)
T 2kct_A 5 QDKLHTVRLFGTVAADGLTMLDGAPGVRFRLEDKDNTSKTVWVLYKGAVPDTFKPGVEVIIEGGLAPG------------ 72 (94)
T ss_dssp SCTTCCEEEEEEECSTTCEECTTSSEEEEEEECSSCTTCEEEEEEESCCCTTCCTTCEEEEEEEECTT------------
T ss_pred CCCCCeEEEeeEEeCCeEEecCCCCEEEEEEEcCCCCCcEEEEEECCCCCccccCCCeEEEEEEEeCC------------
Confidence 3578999999999999999987889999999999 7999999999999999999999999999841
Q ss_pred ccccccCCCCeEEEeEEeecCCCCCC
Q 041604 110 VSENARSRDCFFSATDVLAKHDEKYM 135 (162)
Q Consensus 110 ~~~~~~~~dg~F~A~~lLaKcpskY~ 135 (162)
+|+|.|++|||||||+-.
T Consensus 73 --------~g~F~A~evLaKh~e~~~ 90 (94)
T 2kct_A 73 --------EDTFKARTLMTKCPLEHH 90 (94)
T ss_dssp --------CSEEEEEEEEESSCCC--
T ss_pred --------CCEEEEeEEEEeCCCccc
Confidence 589999999999999853
No 4
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=86.49 E-value=4 Score=29.98 Aligned_cols=71 Identities=21% Similarity=0.218 Sum_probs=50.9
Q ss_pred eCHHHHHhhcCCC---------CCCCcEEEeEEEecCcEEecCCCceEEEEEEeCCeEEEEEEcCC-------CCCCCCC
Q 041604 21 VTPSEALEKYQSN---------PSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYQGS-------LPDLFRE 84 (162)
Q Consensus 21 ~tpsE~~~~~~~~---------~~~~~vrv~G~V~~gSv~~~~~~~~~~F~vtD~~~~i~V~Y~G~-------~Pd~F~e 84 (162)
+|++++++..+.. ..=..|++-|.|. ++.. ....+.|.|.|+...|.+.+=-. -...|++
T Consensus 12 vtIkqil~a~~~~~~~~f~i~g~~i~~V~iVG~V~--~~~~--~~~~~~~~ldD~TG~I~~~~W~~~~~~~~~~~~~~~~ 87 (136)
T 4gop_B 12 VTIRQILNAEQPHPDAEFILDGAELGQLTFVAVVR--NISR--NATNVAYSVEDGTGQIEVRQWLDSSSDDSSKASEIRN 87 (136)
T ss_dssp CCHHHHHHCBCCSSSCCCBSSSSBCCEEEEEEEEE--EEEE--CSSEEEEEEECSSCEEEEEEECC--------CCSCCT
T ss_pred EEHHHHhhccccCCCCcEEECCEEEEEEEEEEEEE--EEEe--cCCeEEEEEECCCCCEEEEEecccCCcccccccccCC
Confidence 6778877653311 1125678888886 3433 35689999999988999887543 2458999
Q ss_pred CCeEEEEEEEc
Q 041604 85 GHSVVVEGFIK 95 (162)
Q Consensus 85 g~~VVveG~~~ 95 (162)
|.-|-|.|++.
T Consensus 88 g~yVrV~G~v~ 98 (136)
T 4gop_B 88 NVYVRVLGTLK 98 (136)
T ss_dssp TCEEEEEEEEE
T ss_pred CCEEEEEEEEE
Confidence 99999999996
No 5
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=85.63 E-value=4 Score=29.79 Aligned_cols=71 Identities=14% Similarity=0.198 Sum_probs=48.2
Q ss_pred eCHHHHHhhcCCC-------CCCCcEEEeEEEecCcEEecCCCceEEEEEEeCCe-EEEEEEcCC------CCCCCCCCC
Q 041604 21 VTPSEALEKYQSN-------PSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVT-DILVRYQGS------LPDLFREGH 86 (162)
Q Consensus 21 ~tpsE~~~~~~~~-------~~~~~vrv~G~V~~gSv~~~~~~~~~~F~vtD~~~-~i~V~Y~G~------~Pd~F~eg~ 86 (162)
+|++++++..+.+ ..=..+++-|.|. ++.. ....+.|.|.|+.. .|.+.+=-. -.+.|++|.
T Consensus 9 vtIkqil~a~~~~~~f~i~g~~i~~V~iVG~V~--~~~~--~~~~~~~~ldD~TG~~I~~~~W~~~~~~~~~~~~~~~g~ 84 (132)
T 3kdf_D 9 CTISQLLSATLVDEVFRIGNVEISQVTIVGIIR--HAEK--APTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPET 84 (132)
T ss_dssp CCHHHHHTCEESSSCEEETTEECCEEEEEEEEE--EEEE--CSSEEEEEEECSSSSCEEEEEEC---------CCCCTTC
T ss_pred EEHHHHhhCccCCCcEEECCEEEEEEEEEEEEE--EEEE--cCCeEEEEEECCCCCEEEEEEEccCCCcccccccccCCC
Confidence 5667776543210 0124567777775 2333 35789999999987 899987432 256899999
Q ss_pred eEEEEEEEc
Q 041604 87 SVVVEGFIK 95 (162)
Q Consensus 87 ~VVveG~~~ 95 (162)
-|-|.|++.
T Consensus 85 yVrV~G~l~ 93 (132)
T 3kdf_D 85 YVKVAGHLR 93 (132)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 999999997
No 6
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=84.06 E-value=7.7 Score=27.17 Aligned_cols=60 Identities=13% Similarity=0.159 Sum_probs=46.4
Q ss_pred CCCcEEEeEEEecC-cEE--ecCC---CceEEEEEEeCCeEEEEEEcCCCCC---CCCCCCeEEEEEEE
Q 041604 35 SKNKFRLGGLVLEG-SVA--HPAS---SSEMEFVVTDLVTDILVRYQGSLPD---LFREGHSVVVEGFI 94 (162)
Q Consensus 35 ~~~~vrv~G~V~~g-Sv~--~~~~---~~~~~F~vtD~~~~i~V~Y~G~~Pd---~F~eg~~VVveG~~ 94 (162)
.+..+.+.|.|..= .+. ...+ ..-+.+.|.|...+|.+.+=+...+ .|++|..|.+.|..
T Consensus 15 ~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG~I~~t~w~~~~~~~~~l~~G~vv~i~g~~ 83 (115)
T 2k50_A 15 EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTGELRAVFWTENIKLLKKFREGDVIRIKDVN 83 (115)
T ss_dssp TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTEEEEEEEETTGGGGGGTCCTTSEEEEEEEE
T ss_pred CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCCeEEEEEeCchhhhhhcCCCCCEEEEEeeE
Confidence 46788999999743 443 1222 4567789999999999998887655 78999999999998
No 7
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=78.64 E-value=9.2 Score=26.61 Aligned_cols=60 Identities=15% Similarity=0.146 Sum_probs=44.6
Q ss_pred CCcEEEeEEEe-cCcEEe-c-CCC---ceEEEEEEeCCeEEEEEEcCCCCC-CCCCCCeEEEEEEEc
Q 041604 36 KNKFRLGGLVL-EGSVAH-P-ASS---SEMEFVVTDLVTDILVRYQGSLPD-LFREGHSVVVEGFIK 95 (162)
Q Consensus 36 ~~~vrv~G~V~-~gSv~~-~-~~~---~~~~F~vtD~~~~i~V~Y~G~~Pd-~F~eg~~VVveG~~~ 95 (162)
+..+.+.|.|. .+.+.. . .++ .-..+.|.|...+|++..=+...+ .|++|..|.+.|+..
T Consensus 11 g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG~I~~tlW~~~~~~~i~~Gdvv~i~g~v~ 77 (97)
T 3e0e_A 11 NLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNELADFEVKKGDIAEVSGYVK 77 (97)
T ss_dssp TEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTEEEEEEEEGGGGGCCCCTTCEEEEEEEEE
T ss_pred CCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECCccccccCCCCEEEEEEEEE
Confidence 46899999997 332222 1 123 356799999999999997777777 499999999999875
No 8
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=78.38 E-value=36 Score=30.17 Aligned_cols=87 Identities=15% Similarity=0.158 Sum_probs=55.3
Q ss_pred CCCCcEEEeEEEecCcEEecCCCceEEEE-EEeCCeEEEEEEcC-CCCC-----CCCCCCeEEEEEEEcCchhhhhhccc
Q 041604 34 PSKNKFRLGGLVLEGSVAHPASSSEMEFV-VTDLVTDILVRYQG-SLPD-----LFREGHSVVVEGFIKPITEEIKNVKS 106 (162)
Q Consensus 34 ~~~~~vrv~G~V~~gSv~~~~~~~~~~F~-vtD~~~~i~V~Y~G-~~Pd-----~F~eg~~VVveG~~~~~~~~~~~~~~ 106 (162)
..++.|+|.|+|. ++ |+ .+..+.|. |.|+...|.|..+. .+++ .++-|..|-|+|.+.... .
T Consensus 28 ~~g~~V~v~Gwv~--~~-R~-~Gk~~~Fi~LrD~sg~iQvv~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~-------~ 96 (456)
T 3m4p_A 28 LEGKLVTFKGWAY--HI-RK-ARKTLIFVELRDGSGYCQCVIFGKELCEPEKVKLLTRECSLEITGRLNAYA-------G 96 (456)
T ss_dssp CCSSEEEEEEEEE--EE-EC-CSSSEEEEEEECSSCEEEEEEESTTTTCHHHHTTCCTTCEEEEEEEEECCC-------S
T ss_pred cCCCEEEEEEEEE--EE-ec-CCCceEEEEEEeCCccEEEEEecccchhhHHhhcCCCccEEEEEeEEEecC-------C
Confidence 4688999999996 23 33 23457775 77887889998886 4443 467899999999996310 0
Q ss_pred cccccccccCCCCeEEEe--EEeecCC
Q 041604 107 EKSVSENARSRDCFFSAT--DVLAKHD 131 (162)
Q Consensus 107 ~~~~~~~~~~~dg~F~A~--~lLaKcp 131 (162)
.++..+..+.++=...|+ +||.||+
T Consensus 97 ~~~~~~~~t~g~~El~~~~i~vl~~a~ 123 (456)
T 3m4p_A 97 KNHPPEIADILNLEMQVTEWKVIGESP 123 (456)
T ss_dssp SSCCCSCTTBCSSEEEEEEEEEEECCC
T ss_pred cccCcccCCCCcEEEEEeEEEEEecCC
Confidence 000001111134466677 4788996
No 9
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=78.28 E-value=16 Score=26.05 Aligned_cols=60 Identities=18% Similarity=0.237 Sum_probs=46.3
Q ss_pred CCcEEEeEEEec-C---cEEecCC-CceEEEEEEeCCeEEEEEEcCCCCCCCCCCCeEEEE-EEEc
Q 041604 36 KNKFRLGGLVLE-G---SVAHPAS-SSEMEFVVTDLVTDILVRYQGSLPDLFREGHSVVVE-GFIK 95 (162)
Q Consensus 36 ~~~vrv~G~V~~-g---Sv~~~~~-~~~~~F~vtD~~~~i~V~Y~G~~Pd~F~eg~~VVve-G~~~ 95 (162)
...+.+.|.|.. + ++....+ +.-+.+.|.|...+|++..=+...+.|++|..|.+. |+..
T Consensus 12 ~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~I~~tlW~~~~~~~~~G~vv~i~~g~v~ 77 (119)
T 1o7i_A 12 MESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKHAGSIKEGQVVKIENAWTT 77 (119)
T ss_dssp CSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEEEEEEEEGGGTTCCCTTCEEEEEEEEEE
T ss_pred CCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCEEEEEEECChhhcCCCCCEEEEEeEEEE
Confidence 347999999863 2 2222222 257789999999889999988888999999999999 8775
No 10
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=77.45 E-value=11 Score=30.86 Aligned_cols=73 Identities=14% Similarity=0.208 Sum_probs=50.6
Q ss_pred eeeCHHHHHhhcCCCC----CC---CcEEEeEEEecCcEEecCCCceEEEEEEeCCe-EEEEEEcCCC------CCCCCC
Q 041604 19 FYVTPSEALEKYQSNP----SK---NKFRLGGLVLEGSVAHPASSSEMEFVVTDLVT-DILVRYQGSL------PDLFRE 84 (162)
Q Consensus 19 yy~tpsE~~~~~~~~~----~~---~~vrv~G~V~~gSv~~~~~~~~~~F~vtD~~~-~i~V~Y~G~~------Pd~F~e 84 (162)
-=+|+.+++.....+. .+ ..|++.|+|.. +.. ....+.|+|.|... .|.+++=-.- -..|++
T Consensus 47 ~PvtIkqil~a~~~d~~f~i~g~~i~~V~ivG~V~~--i~~--~~~~~~~~L~D~TG~~I~~k~W~~~~~~~~~~~~~~~ 122 (270)
T 2pi2_A 47 VPCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRH--AEK--APTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPP 122 (270)
T ss_dssp EECCHHHHHHCEEETTEEEETTEEESEEEEEEEEEE--EEE--CSSEEEEEEECSSSSCEEEEEECC-------CCCCCT
T ss_pred EEEEHHHHhcCccCCCcEEECCEEEEEEEEEEEEEE--EEe--ccceEEEEEECCCCCEEEEEEEcCcCcccchhhcCCC
Confidence 3588899887532100 01 35777777752 443 35789999999886 8988876433 257999
Q ss_pred CCeEEEEEEEc
Q 041604 85 GHSVVVEGFIK 95 (162)
Q Consensus 85 g~~VVveG~~~ 95 (162)
|.-|-|.|++.
T Consensus 123 G~yVrV~G~v~ 133 (270)
T 2pi2_A 123 ETYVKVAGHLR 133 (270)
T ss_dssp TCEEEEEEEEE
T ss_pred CCEEEEEEEEE
Confidence 99999999996
No 11
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=76.91 E-value=37 Score=29.71 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=41.2
Q ss_pred CCCcEEEeEEEecCcEEecCCCceEEE-EEEeCCeEEEEEEcCCCCCCCC-CCCeEEEEEEEcC
Q 041604 35 SKNKFRLGGLVLEGSVAHPASSSEMEF-VVTDLVTDILVRYQGSLPDLFR-EGHSVVVEGFIKP 96 (162)
Q Consensus 35 ~~~~vrv~G~V~~gSv~~~~~~~~~~F-~vtD~~~~i~V~Y~G~~Pd~F~-eg~~VVveG~~~~ 96 (162)
.++.|+|.|+|.. + ++. + .+.| .|.|....+.|.++. ...+ -|..|-|+|.+..
T Consensus 12 ~~~~V~v~Gwv~~--~-R~~-g-~~~F~~lrD~~g~iQ~v~~~---~~l~~~~~~v~v~G~v~~ 67 (422)
T 1n9w_A 12 VGQEVELLGFLHW--R-RDL-G-RIQFLLLRDRSGVVQVVTGG---LKLPLPESALRVRGLVVE 67 (422)
T ss_dssp TTSEEEEEEEEEE--E-EEC-S-SEEEEEEEETTEEEEEEEES---CCCCCTTCEEEEEEEEEE
T ss_pred CCCEEEEEEEEEE--E-ecC-C-CeEEEEEEECCEEEEEEEEc---cccCCCCCEEEEEEEEEe
Confidence 5789999999972 3 332 3 3555 567888889998875 6678 8999999999963
No 12
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=76.79 E-value=23 Score=27.04 Aligned_cols=84 Identities=12% Similarity=0.036 Sum_probs=56.8
Q ss_pred cCeeeeeCHHHHHhhcCCCCCCCcEEEeEEEecCcEEecCCCceEEEEEEeCC-eEEEEEEcCCCCCCCCCCCeEEEEEE
Q 041604 15 DQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLV-TDILVRYQGSLPDLFREGHSVVVEGF 93 (162)
Q Consensus 15 ~~~~yy~tpsE~~~~~~~~~~~~~vrv~G~V~~gSv~~~~~~~~~~F~vtD~~-~~i~V~Y~G~~Pd~F~eg~~VVveG~ 93 (162)
+.....++.+-|.+ +.+++|||-|.|. ..++++ -.|.++... ..+.|....++. ...+.-|-|.|+
T Consensus 27 ~~~~pRVN~s~L~~-----fvGk~VriVGkV~----~~~~~G--~~~~l~s~Dg~~VtV~l~~pL~--~~~~~~VEViG~ 93 (142)
T 2pi2_E 27 DLPRSRINAGMLAQ-----FIDKPVCFVGRLE----KIHPTG--KMFILSDGEGKNGTIELMEPLD--EEISGIVEVVGR 93 (142)
T ss_dssp GSCCEEECGGGGGG-----STTCEEEEEEEEE----EECTTS--SEEEEECTTSCEEEEECSSCCS--SCCCSEEEEEEE
T ss_pred cCCcceECHHHHHh-----hCCCEEEEEEEEe----EEcCCC--CEEEEEeCCCcEEEEEeCCCCC--ccCCCEEEEEEE
Confidence 44556788777743 5799999999997 223334 346666654 688888765332 223778999999
Q ss_pred EcCchhhhhhccccccccccccCCCCeEEEeEEeecCCCC
Q 041604 94 IKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEK 133 (162)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~dg~F~A~~lLaKcpsk 133 (162)
..+ +++..|.... -+...
T Consensus 94 V~~---------------------~~tI~~~~~~-~fGd~ 111 (142)
T 2pi2_E 94 VTA---------------------KATILCTSYV-QFKED 111 (142)
T ss_dssp ECT---------------------TSCEEEEEEE-ECCCS
T ss_pred ECC---------------------CCcEEEEEEE-ecCCC
Confidence 985 6778877753 45554
No 13
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=74.20 E-value=24 Score=26.05 Aligned_cols=69 Identities=12% Similarity=0.040 Sum_probs=48.7
Q ss_pred cCeeeeeCHHHHHhhcCCCCCCCcEEEeEEEecCcEEecCCCceEEEEEEeCC-eEEEEEEcCCCCCCCCCCCeEEEEEE
Q 041604 15 DQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLV-TDILVRYQGSLPDLFREGHSVVVEGF 93 (162)
Q Consensus 15 ~~~~yy~tpsE~~~~~~~~~~~~~vrv~G~V~~gSv~~~~~~~~~~F~vtD~~-~~i~V~Y~G~~Pd~F~eg~~VVveG~ 93 (162)
+.....++.+-|.+ +.+++||+-|.|. ...+++ -+|.+.+.. ..+.|....+++... +.-|-|.|+
T Consensus 6 ~~p~pRVn~s~L~~-----fvgk~VrivGkV~----~~~~~g--~~~~l~s~Dg~~Vtv~l~~p~~~~l--~~~vEViG~ 72 (121)
T 3kdf_A 6 DLPRSRINAGMLAQ-----FIDKPVCFVGRLE----KIHPTG--KMFILSDGEGKNGTIELMEPLDEEI--SGIVEVVGR 72 (121)
T ss_dssp GSCCEEECGGGGGG-----GTTCEEEEEEEEE----EECTTS--SEEEEECTTSCEEEEECSSCCSSCC--CSEEEEEEE
T ss_pred cCCcceECHHHHHh-----hCCCeEEEEEEEE----EEcCCC--CEEEEEeCCCCEEEEEeCCCCCccc--CcEEEEEEE
Confidence 34456777777754 4799999999997 222333 357777754 789999887554333 458999999
Q ss_pred EcC
Q 041604 94 IKP 96 (162)
Q Consensus 94 ~~~ 96 (162)
..+
T Consensus 73 V~~ 75 (121)
T 3kdf_A 73 VTA 75 (121)
T ss_dssp ECT
T ss_pred ECC
Confidence 985
No 14
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=70.13 E-value=25 Score=31.20 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=54.3
Q ss_pred CCCCcEEEeEEEecCcEEecCCCceEEEEEEeCCeEE-EEEEc--CC---CCCCCCCCCeEEEEEEEcCchhhhhhcccc
Q 041604 34 PSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDI-LVRYQ--GS---LPDLFREGHSVVVEGFIKPITEEIKNVKSE 107 (162)
Q Consensus 34 ~~~~~vrv~G~V~~gSv~~~~~~~~~~F~vtD~~~~i-~V~Y~--G~---~Pd~F~eg~~VVveG~~~~~~~~~~~~~~~ 107 (162)
...+.++|.|.|..-.... .+.++-|.+.|+...| -|.|. +. +-.....|+.|+|-|.+.
T Consensus 282 ~~~~~~~v~G~V~~~P~~~--~GGHV~f~l~d~~~~i~c~ayeptk~fr~~vr~L~~GD~V~v~G~v~------------ 347 (402)
T 3au7_A 282 ENYRSYRLRGRVTLEPYDI--EGGHVFFEIDTKFGSVKCAAFEPTKQFRNVIRLLRKGDVVEVYGSMK------------ 347 (402)
T ss_dssp CTTCEEEEEEEEEEEEEEE--TTTEEEEEEEETTEEEEEEECGGGTTHHHHHTTCCTTCEEEEEEEEE------------
T ss_pred ccCceEEEEEEEecCcEec--cCceEEEEEEcCCCEEEEEEEccchHHHHHHhcCCCCCEEEEEEeec------------
Confidence 4567999999997532222 3569999999998777 56677 53 334668899999999997
Q ss_pred ccccccccCCCCeEEEeEEeec
Q 041604 108 KSVSENARSRDCFFSATDVLAK 129 (162)
Q Consensus 108 ~~~~~~~~~~dg~F~A~~lLaK 129 (162)
.|++..+++-..
T Consensus 348 ----------~gtLnvEk~~v~ 359 (402)
T 3au7_A 348 ----------KDTINLEKIQIV 359 (402)
T ss_dssp ----------TTEEEEEEEEEE
T ss_pred ----------CCEEEEEEEEEc
Confidence 358998887655
No 15
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=69.40 E-value=27 Score=24.74 Aligned_cols=60 Identities=23% Similarity=0.294 Sum_probs=44.0
Q ss_pred CCcEEEeEEEe-cCcE---EecCC--CceEEEEEEeCCeEEEEEEcCCCCC-CCCCCCeEEEEEEEc
Q 041604 36 KNKFRLGGLVL-EGSV---AHPAS--SSEMEFVVTDLVTDILVRYQGSLPD-LFREGHSVVVEGFIK 95 (162)
Q Consensus 36 ~~~vrv~G~V~-~gSv---~~~~~--~~~~~F~vtD~~~~i~V~Y~G~~Pd-~F~eg~~VVveG~~~ 95 (162)
+..+.|.|.|. .+.+ .+... +.-..+.|.|....|+|..=+...+ .|.+|..|.+.|+..
T Consensus 14 ~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG~IrvtlW~~~a~~~l~~Gdvv~i~g~vk 80 (105)
T 3dm3_A 14 GMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNLTDIDVGRGDYVRVRGYIR 80 (105)
T ss_dssp SEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEEEEEEEEGGGGGSCCCTTCEEEEEEEEE
T ss_pred CCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECcccccccCCCCEEEEEEEEE
Confidence 36899999886 3323 22111 2355689999988999996666665 799999999999876
No 16
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=69.14 E-value=26 Score=31.99 Aligned_cols=85 Identities=16% Similarity=0.203 Sum_probs=52.4
Q ss_pred CCCcEEEeEEEecCcEEecCCCceEEEEEEeCCeEEEEEEcCCCCC------CCCCCCeEEEEEEEcCchhhhhhccccc
Q 041604 35 SKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYQGSLPD------LFREGHSVVVEGFIKPITEEIKNVKSEK 108 (162)
Q Consensus 35 ~~~~vrv~G~V~~gSv~~~~~~~~~~F~vtD~~~~i~V~Y~G~~Pd------~F~eg~~VVveG~~~~~~~~~~~~~~~~ 108 (162)
.++.|+|.|+|.. + |+. +.-+=+.|.|....+.|..+...++ ..+-|..|-|+|++... .++
T Consensus 14 ~g~~V~l~GwV~~--~-R~~-G~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~--------~~~ 81 (585)
T 1c0a_A 14 VGQQVTLCGWVNR--R-RDL-GSLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRAR--------DEK 81 (585)
T ss_dssp TTCEEEEEEEEEE--E-EEC-SSCEEEEEEETTEEEEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEEC--------CTT
T ss_pred CCCEEEEEEEEEE--E-ecC-CCcEEEEEEECCeeEEEEEeCCchHHHHHHhcCCCCCEEEEEeEEEcc--------Ccc
Confidence 5789999999962 3 332 3333346678888899988643332 46789999999999631 111
Q ss_pred cccccccCCCCeEEEe--EEeecCC
Q 041604 109 SVSENARSRDCFFSAT--DVLAKHD 131 (162)
Q Consensus 109 ~~~~~~~~~dg~F~A~--~lLaKcp 131 (162)
.+..+...++=...|+ +||.||.
T Consensus 82 ~~n~~~~~geiEl~~~~i~vl~~a~ 106 (585)
T 1c0a_A 82 NINRDMATGEIEVLASSLTIINRAD 106 (585)
T ss_dssp TCCTTSTTTTEEEEEEEEEEEECCC
T ss_pred cccccCCCccEEEEEeEEEEEeccC
Confidence 1111222233345566 5888884
No 17
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=68.27 E-value=32 Score=25.02 Aligned_cols=65 Identities=12% Similarity=0.071 Sum_probs=46.4
Q ss_pred eeeeeCHHHHHhhcCCCCCCCcEEEeEEEecCcEEecCCCceEEEEEEeC-CeEEEEEEcCCCCCCCCCCCeEEEEEEEc
Q 041604 17 LVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDL-VTDILVRYQGSLPDLFREGHSVVVEGFIK 95 (162)
Q Consensus 17 ~~yy~tpsE~~~~~~~~~~~~~vrv~G~V~~gSv~~~~~~~~~~F~vtD~-~~~i~V~Y~G~~Pd~F~eg~~VVveG~~~ 95 (162)
....++++.|.+ +.++.||+-|.|. ++. + -+|.|... +..+.|.... |-.+..+.-|-|.|+..
T Consensus 4 ~tpRVn~~~L~~-----~~g~~VrivGkV~--~~~----g--~~~~l~s~d~~~Vtv~l~~--~~~~~~~~~vEViG~V~ 68 (114)
T 4gop_A 4 PTPLINSSMLGQ-----YVGQTVRIVGKVH--KVT----G--NTLLMQTSDLGNVEIAMTP--DSDVSSSTFVEVTGKVS 68 (114)
T ss_dssp CCCEECTTTGGG-----GTTSEEEEEEEEE--EEE----T--TEEEEECTTSCEEEEECCS--SCCGGGCSEEEEEEEEC
T ss_pred CCceECHHHHHh-----hCCCeEEEEEEEe--eeC----C--CEEEEEeCCCCEEEEEeCC--CCCcccCcEEEEEEEEc
Confidence 345677777754 4789999999997 222 2 34777754 3577777654 55567799999999998
Q ss_pred C
Q 041604 96 P 96 (162)
Q Consensus 96 ~ 96 (162)
+
T Consensus 69 ~ 69 (114)
T 4gop_A 69 D 69 (114)
T ss_dssp T
T ss_pred C
Confidence 5
No 18
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=66.34 E-value=67 Score=28.57 Aligned_cols=70 Identities=13% Similarity=0.127 Sum_probs=46.3
Q ss_pred eeCHHHHHhhcCCCCCCCcEEEeEEEecCcEEecCCCceEE-EEEEeCCeEEEEEEcCC----CCC-------CCCCCCe
Q 041604 20 YVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEME-FVVTDLVTDILVRYQGS----LPD-------LFREGHS 87 (162)
Q Consensus 20 y~tpsE~~~~~~~~~~~~~vrv~G~V~~gSv~~~~~~~~~~-F~vtD~~~~i~V~Y~G~----~Pd-------~F~eg~~ 87 (162)
+.+..++... ...++.|+|.|+|.. + |+. +..+. +.|.|....|.|..+.. +++ ..+-|..
T Consensus 23 ~~~~~~l~~~---~~~g~~V~v~GwV~~--~-R~~-g~~l~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~~~~l~~e~~ 95 (487)
T 1eov_A 23 RVKFVDLDEA---KDSDKEVLFRARVHN--T-RQQ-GATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESI 95 (487)
T ss_dssp CCCGGGCCTT---TTTTCEEEEEEEEEE--E-EEC-SSSEEEEEEEETTEEEEEEEECCSSSSSCHHHHHHHTTCCTTCE
T ss_pred eeEHHHhccc---ccCCCEEEEEEEEEE--e-ecc-CCccEEEEEEECCccEEEEEeccccccccHHHHHHHhcCCCCCE
Confidence 3445555432 135789999999962 3 332 33434 46778888899988643 221 4678999
Q ss_pred EEEEEEEcC
Q 041604 88 VVVEGFIKP 96 (162)
Q Consensus 88 VVveG~~~~ 96 (162)
|-|+|++..
T Consensus 96 V~V~G~v~~ 104 (487)
T 1eov_A 96 VLVRGIVKK 104 (487)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEe
Confidence 999999963
No 19
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=62.29 E-value=31 Score=30.19 Aligned_cols=57 Identities=16% Similarity=0.209 Sum_probs=41.3
Q ss_pred CCCcEEEeEEEecCcEEecCCCceEEE-EEEeCCeEEEEEEcCCCCCC-----CCCCCeEEEEEEEc
Q 041604 35 SKNKFRLGGLVLEGSVAHPASSSEMEF-VVTDLVTDILVRYQGSLPDL-----FREGHSVVVEGFIK 95 (162)
Q Consensus 35 ~~~~vrv~G~V~~gSv~~~~~~~~~~F-~vtD~~~~i~V~Y~G~~Pd~-----F~eg~~VVveG~~~ 95 (162)
.++.|+|.|+|.. + |+. +..+.| .|.|....+.|..+..+++. .+-|..|-|+|.+.
T Consensus 10 ~~~~V~v~Gwv~~--~-R~~-Gk~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~l~~~~~v~v~G~v~ 72 (435)
T 2xgt_A 10 RNERVCIKGWIHR--M-RRQ-GKSLMFFILRDGTGFLQVLLMDKLCQTYDALTVNTECTVEIYGAIK 72 (435)
T ss_dssp TTSEEEEEEEEEE--E-EEC-TTSEEEEEEECSSCEEEEEEEGGGGSSHHHHHCCTTCEEEEEEEEE
T ss_pred CCCEEEEEEEEEE--e-ccc-CCCcEEEEEEECCceEEEEECCcchhHHHHhcCCCCCEEEEEEEEE
Confidence 5789999999972 3 332 234555 56787788999887554444 46799999999996
No 20
>4hsp_A Hypothetical protein; PF11736 family protein, DUF3299, structural genomics, joint for structural genomics, JCSG; HET: MSE; 2.45A {Pseudomonas aeruginosa}
Probab=60.77 E-value=19 Score=28.01 Aligned_cols=58 Identities=17% Similarity=0.265 Sum_probs=43.3
Q ss_pred CCCCcEEEeEEEecCcEEecCCCceEEEEEEeC------------CeEEEEEEcCCC--CCCCCCCCeEEEEEEEcC
Q 041604 34 PSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDL------------VTDILVRYQGSL--PDLFREGHSVVVEGFIKP 96 (162)
Q Consensus 34 ~~~~~vrv~G~V~~gSv~~~~~~~~~~F~vtD~------------~~~i~V~Y~G~~--Pd~F~eg~~VVveG~~~~ 96 (162)
..|+.|||.|.|++ ++.+.++...+|-|+-- +.-|.|+|.-.+ .++| +.|.|+|+|.-
T Consensus 52 LdGk~VripGfvvP--Le~~~~~~vteFlLVPy~GACiH~PPPPpNQiI~V~~~~g~~~~~l~---~pvwV~G~L~~ 123 (150)
T 4hsp_A 52 LDGIEAKLPGYIVP--LEISEAGLVTEFLLVPYYGACIHVPPPPSNQIVYVKTAKGVQMDELY---QPFWVEGTFKV 123 (150)
T ss_dssp GTTEEEEEEEEEEE--EEECTTSEEEEEEEESSTTBTTTBCCCCGGGCEEEEEEEEEESTTTT---SCEEEEEEEEC
T ss_pred hCCCEEEeccEEEE--eccCCCCcEEEEEEeCCCCcCcCCCCCCCceEEEEECCCCccchhcc---ceEEEEEEEEE
Confidence 46899999999986 66554456788999854 367899998643 3344 57999999973
No 21
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=58.29 E-value=1.1e+02 Score=27.91 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=41.1
Q ss_pred CCCcEEEeEEEecCcEEecCCCceEEE-EEEeCCeEEEEEEcCCCC-----CCCCCCCeEEEEEEEc
Q 041604 35 SKNKFRLGGLVLEGSVAHPASSSEMEF-VVTDLVTDILVRYQGSLP-----DLFREGHSVVVEGFIK 95 (162)
Q Consensus 35 ~~~~vrv~G~V~~gSv~~~~~~~~~~F-~vtD~~~~i~V~Y~G~~P-----d~F~eg~~VVveG~~~ 95 (162)
.++.|+|.|+|.. + |+. + .+.| .|.|....+.|..+...+ ...+-|..|-|+|++.
T Consensus 15 ~g~~V~l~GwV~~--~-R~~-G-~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~l~~e~~V~V~G~v~ 76 (580)
T 1l0w_A 15 VGEEVVLEGWVNR--R-RDL-G-GLIFLDLRDREGLVQLVAHPASPAYATAERVRPEWVVRAKGLVR 76 (580)
T ss_dssp TTCEEEEEEEEEE--E-EEC-S-SCEEEEEEETTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEE
T ss_pred CCCEEEEEEEEEE--E-ecC-C-CeEEEEEEECCeeEEEEEeCChhHHHHHhcCCCCcEEEEEEEEE
Confidence 5889999999962 3 332 3 3554 577888889999875433 2357799999999996
No 22
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=56.98 E-value=1e+02 Score=26.98 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=40.5
Q ss_pred CCCcEEEeEEEecCcEEecCCCceEEE-EEEeCCeEEEEEEcCCCC-----CCCCCCCeEEEEEEEcC
Q 041604 35 SKNKFRLGGLVLEGSVAHPASSSEMEF-VVTDLVTDILVRYQGSLP-----DLFREGHSVVVEGFIKP 96 (162)
Q Consensus 35 ~~~~vrv~G~V~~gSv~~~~~~~~~~F-~vtD~~~~i~V~Y~G~~P-----d~F~eg~~VVveG~~~~ 96 (162)
.++.|+|.|+|.. + ++. +. +.| .|.|....+.|..+.... ...+-|..|-|+|.+..
T Consensus 15 ~~~~V~v~Gwv~~--~-R~~-g~-~~F~~lrD~~g~iQ~v~~~~~~~~~~~~~l~~~~~v~v~G~v~~ 77 (429)
T 1wyd_A 15 DGKEVIWAGWVHL--L-RDL-GG-KKFIILRDKTGLGQVVVDKNSSAFGISQELTQESVIQVRGIVKA 77 (429)
T ss_dssp TTCEEEEEEEEEE--E-EEE-TT-EEEEEEEETTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEEE
T ss_pred CCCEEEEEEEEEE--E-ecC-CC-eEEEEEEECCeeEEEEEeCChHHHHHHHhCCCCCEEEEEEEEEe
Confidence 5789999999973 3 322 33 554 567888889998864321 23577999999999963
No 23
>3b9c_A HSPC159; beta sandwich, unknown function; 1.90A {Homo sapiens} PDB: 2jj6_A
Probab=56.67 E-value=9.5 Score=28.52 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=22.8
Q ss_pred EEEEEcCCCCCCCCCCCeEEEEEEEcC
Q 041604 70 ILVRYQGSLPDLFREGHSVVVEGFIKP 96 (162)
Q Consensus 70 i~V~Y~G~~Pd~F~eg~~VVveG~~~~ 96 (162)
-.|.|.+.+|.-++.|..+++.|+..+
T Consensus 8 ~~~~~~~~i~~gl~~G~~i~I~G~v~~ 34 (144)
T 3b9c_A 8 HMVPFCGHIKGGMRPGKKVLVMGIVDL 34 (144)
T ss_dssp ---CEEEECTTCCCTTCEEEEEEEECS
T ss_pred eeeeEcccCCCCCccCCEEEEEEEECC
Confidence 358899999999999999999999975
No 24
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=54.60 E-value=1.2e+02 Score=27.23 Aligned_cols=71 Identities=14% Similarity=0.254 Sum_probs=46.4
Q ss_pred eCHHHHHhhcCC-----CCCCCcEEEeEEEecCcEEecCCCceEEE-EEEeCCeEEEEEEcCC-C-C-C-------CCCC
Q 041604 21 VTPSEALEKYQS-----NPSKNKFRLGGLVLEGSVAHPASSSEMEF-VVTDLVTDILVRYQGS-L-P-D-------LFRE 84 (162)
Q Consensus 21 ~tpsE~~~~~~~-----~~~~~~vrv~G~V~~gSv~~~~~~~~~~F-~vtD~~~~i~V~Y~G~-~-P-d-------~F~e 84 (162)
.+..++.+++.. ...++.|+|.|+|.. + |. .+..+.| .|.|+...|.|..... + + + .+.-
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~V~v~Grv~~--~-R~-~gkk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~~l~~ 110 (521)
T 3bju_A 35 ISLTDFIQKYSHLQPGDHLTDITLKVAGRIHA--K-RA-SGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRR 110 (521)
T ss_dssp SCHHHHHHHHTTCCTTCBCSSCCEEEEEEEEE--E-EE-SSSSEEEEEEEETTEEEEEEEEGGGSSCHHHHHHHHHHCCT
T ss_pred cchHHHHHHhhhhccccccCCcEEEEEEEEEE--E-ec-CCCCcEEEEEEECCEEEEEEEECCccCCHHHHHHHHhcCCC
Confidence 456677654321 123568999999962 3 32 2324665 5678888899888642 2 1 1 3577
Q ss_pred CCeEEEEEEEc
Q 041604 85 GHSVVVEGFIK 95 (162)
Q Consensus 85 g~~VVveG~~~ 95 (162)
|..|-|+|.+.
T Consensus 111 gd~V~V~G~v~ 121 (521)
T 3bju_A 111 GDIIGVQGNPG 121 (521)
T ss_dssp TCEEEEEEEEE
T ss_pred CCEEEEEEEEE
Confidence 99999999996
No 25
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=54.11 E-value=1.1e+02 Score=27.97 Aligned_cols=97 Identities=16% Similarity=0.185 Sum_probs=61.4
Q ss_pred eeeCHHHHHhhcCCCCCCCcEEEeEEEecCcEEecCCCceEEEE-EEeCCeEEEEEEcCC--CCC-------CCCCCCeE
Q 041604 19 FYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFV-VTDLVTDILVRYQGS--LPD-------LFREGHSV 88 (162)
Q Consensus 19 yy~tpsE~~~~~~~~~~~~~vrv~G~V~~gSv~~~~~~~~~~F~-vtD~~~~i~V~Y~G~--~Pd-------~F~eg~~V 88 (162)
-+....++... ..++.|+|.|+|.. + |. .+ .+.|. |.|....|.|..... .+. ...-|..|
T Consensus 49 ~~~~i~~l~~~----~~g~~V~v~Gwv~~--~-R~-~g-kl~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~~l~~es~V 119 (548)
T 3i7f_A 49 KYTEIEELVPA----MAEKTVTIRARVQA--V-RG-KG-NMVFLFLRKGIYTCQALVMKSETISKEFVQFCQKISAESIC 119 (548)
T ss_dssp CBCCGGGCSGG----GTTCEEEEEEEEEE--E-EE-CS-SEEEEEEEETTEEEEEEEECSSSSCHHHHHHHHTCCTTEEE
T ss_pred ceEEhhhcchh----cCCCEEEEEEEEEE--E-ec-CC-CeEEEEEEECCeeEEEEEECCCccCHHHHHHHhCCCCCCEE
Confidence 35566666532 36889999999962 3 33 23 57765 888888999888741 221 46789999
Q ss_pred EEEEEEcCchhhhhhccccccccccccCCCCeEEEe--EEeecCCCCC
Q 041604 89 VVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSAT--DVLAKHDEKY 134 (162)
Q Consensus 89 VveG~~~~~~~~~~~~~~~~~~~~~~~~~dg~F~A~--~lLaKcpskY 134 (162)
-|+|.+... .+. ..+++.++=...|+ .||.||+..|
T Consensus 120 ~V~G~v~~~---------~~~-~~~~~~~~~El~~~~i~vls~a~~~l 157 (548)
T 3i7f_A 120 DITGIVKAV---------EKP-IEKATQQDVEIHVTSIAVVSLAEYPL 157 (548)
T ss_dssp EEEEEEEEC---------SSC-CTTSSSCSEEEEEEEEEEEECCCBSC
T ss_pred EEEEEEEeC---------Ccc-cccCCCCcEEEEEeEEEEEecCCCCC
Confidence 999999731 100 11222233455676 5788997554
No 26
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=53.29 E-value=70 Score=29.71 Aligned_cols=63 Identities=16% Similarity=0.030 Sum_probs=44.1
Q ss_pred CHHHHHhhcCCCCCCCcEEEeEEEecCcEEecCCCceEEEEEEeCCeEEEEEEcCCCC--C------CCCCCCeEEEEEE
Q 041604 22 TPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYQGSLP--D------LFREGHSVVVEGF 93 (162)
Q Consensus 22 tpsE~~~~~~~~~~~~~vrv~G~V~~gSv~~~~~~~~~~F~vtD~~~~i~V~Y~G~~P--d------~F~eg~~VVveG~ 93 (162)
+..|+... ..++.|+|.|+|.. + |+ . .=..|.|....+.|....... + ..+-|..|.|+|.
T Consensus 14 ~~~~l~~~----~~g~~V~l~GwV~~--~-R~--~--~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~l~~e~~V~V~G~ 82 (617)
T 4ah6_A 14 TCGELRSS----HLGQEVTLCGWIQY--R-RQ--N--TFLVLRDFDGLVQVIIPQDESAASVKKILCEAPVESVVQVSGT 82 (617)
T ss_dssp CGGGCCGG----GTTCEEEEEEEECC--C-CT--T--TEEEEECSSCEEEEECCCSSSSHHHHHHHHHCCSSCEEEEEEE
T ss_pred EHHHhHHH----hCCCEEEEEEEeee--e-cC--e--EEEEEEeCCcCEEEEEeCCcCcHHHHHHHhcCCCCCEEEEEEE
Confidence 44556543 35889999999962 2 22 2 334678888889998875432 1 3678999999999
Q ss_pred Ec
Q 041604 94 IK 95 (162)
Q Consensus 94 ~~ 95 (162)
+.
T Consensus 83 v~ 84 (617)
T 4ah6_A 83 VI 84 (617)
T ss_dssp EE
T ss_pred EE
Confidence 96
No 27
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=50.89 E-value=1.4e+02 Score=26.78 Aligned_cols=70 Identities=13% Similarity=0.174 Sum_probs=46.2
Q ss_pred eCHHHHHhhcCCCCC-------CCcEEEeEEEecCcEEecCCCceEEEEEEeCCeEEEEEEcCC-CC-C-------CCCC
Q 041604 21 VTPSEALEKYQSNPS-------KNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYQGS-LP-D-------LFRE 84 (162)
Q Consensus 21 ~tpsE~~~~~~~~~~-------~~~vrv~G~V~~gSv~~~~~~~~~~F~vtD~~~~i~V~Y~G~-~P-d-------~F~e 84 (162)
.+..|+.++... .. ++.|+|.|+|.. + |+. +.-.=+.|.|....|.|..+.. ++ + ..+-
T Consensus 43 ~~~~~~~~~~~~-~~~~~~~~~~~~V~v~Gwv~~--~-R~~-gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~ 117 (504)
T 1e1o_A 43 HTSDQLHEEFDA-KDNQELESLNIEVSVAGRMMT--R-RIM-GKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDL 117 (504)
T ss_dssp CCHHHHHHHHTT-CCHHHHHHHCCEEEEEEEEEE--E-EEE-TTEEEEEEEETTEEEEEEEETTTSSTTHHHHTGGGCCT
T ss_pred eEHHHHHHHhhc-cCccccccCCCEEEEEEEEEE--E-ecC-CCcEEEEEEECCeeEEEEEECCcCCHHHHHHHHhcCCC
Confidence 356777766431 11 678999999962 3 322 3333345678888899988643 32 2 2467
Q ss_pred CCeEEEEEEEc
Q 041604 85 GHSVVVEGFIK 95 (162)
Q Consensus 85 g~~VVveG~~~ 95 (162)
|..|-|+|.+.
T Consensus 118 g~~V~V~G~v~ 128 (504)
T 1e1o_A 118 GDIIGARGTLF 128 (504)
T ss_dssp TCEEEEEEEEE
T ss_pred CCEEEEEEEEE
Confidence 99999999996
No 28
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=50.79 E-value=1.3e+02 Score=26.42 Aligned_cols=57 Identities=21% Similarity=0.274 Sum_probs=42.5
Q ss_pred CCCcEEEeEEEecCcEEecCCCceEEE-EEEeCCeEEEEEEcCCC-C-------CCCCCCCeEEEEEEEcC
Q 041604 35 SKNKFRLGGLVLEGSVAHPASSSEMEF-VVTDLVTDILVRYQGSL-P-------DLFREGHSVVVEGFIKP 96 (162)
Q Consensus 35 ~~~~vrv~G~V~~gSv~~~~~~~~~~F-~vtD~~~~i~V~Y~G~~-P-------d~F~eg~~VVveG~~~~ 96 (162)
.++.|+|.|+|.. + ++. + .+.| .|.|+...+.|..+... + ...+-|..|-|+|.+..
T Consensus 15 ~g~~V~v~Gwv~~--~-R~~-g-~~~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~V~V~G~v~~ 80 (438)
T 3nem_A 15 NGQKVKVAGWVWE--V-KDL-G-GIKFLWIRDRDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNF 80 (438)
T ss_dssp TTCEEEEEEEEEE--E-EEE-T-TEEEEEEEETTEEEEEEEETTTSCHHHHHHGGGCCTTCEEEEEEEEEE
T ss_pred CCCEEEEEEEEEE--E-ecC-C-CeEEEEEEECCeeEEEEEeCCcCCHHHHHHHhcCCCCCEEEEEEEEEe
Confidence 5789999999973 3 322 3 4777 68898888988887542 2 24678999999999973
No 29
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=50.03 E-value=74 Score=28.42 Aligned_cols=69 Identities=16% Similarity=0.168 Sum_probs=45.7
Q ss_pred CHHHHHhhcCCCCC-------CCcEEEeEEEecCcEEecCCCceEEEEEEeCCeEEEEEEcCC-CC-------CCCCCCC
Q 041604 22 TPSEALEKYQSNPS-------KNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYQGS-LP-------DLFREGH 86 (162)
Q Consensus 22 tpsE~~~~~~~~~~-------~~~vrv~G~V~~gSv~~~~~~~~~~F~vtD~~~~i~V~Y~G~-~P-------d~F~eg~ 86 (162)
+..|+.++... .. ++.|+|.|+|.. + |+. +.-.=..|.|+...|.|..+.. ++ ...+-|.
T Consensus 36 ~~~~~~~~~~~-~~~~~~~~~~~~V~v~Gwv~~--~-R~~-gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~l~~g~ 110 (493)
T 3a74_A 36 KAEELFELYGD-LSKEELEEQQIEVAVAGRIMT--K-RGM-GKAGFAHIQDVTGQIQIYVRQDDVGEQQYELFKISDLGD 110 (493)
T ss_dssp CHHHHHHHHTT-SCHHHHHHHCCEEEEEEEEEE--E-EEE-TTEEEEEEEETTEEEEEEEEHHHHHHHHHHHHHHCCTTC
T ss_pred ehHHHHHhhcc-ccchhhccCCCEEEEEEEEEE--E-ecC-CCcEEEEEEECCEeEEEEEECCcCCHHHHHHHhcCCCCC
Confidence 56777765431 11 678999999962 3 322 3333345678888899888532 21 1367899
Q ss_pred eEEEEEEEc
Q 041604 87 SVVVEGFIK 95 (162)
Q Consensus 87 ~VVveG~~~ 95 (162)
.|-|+|.+.
T Consensus 111 ~v~V~G~v~ 119 (493)
T 3a74_A 111 IVGVRGTMF 119 (493)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 999999996
No 30
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=49.94 E-value=64 Score=22.69 Aligned_cols=60 Identities=13% Similarity=-0.014 Sum_probs=43.2
Q ss_pred CCCcEEEeEEEecCcEEecCCCceEEEEEEeCCeEEEEEEcC-CCCCCCCCCCeEEEE-EEEc
Q 041604 35 SKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYQG-SLPDLFREGHSVVVE-GFIK 95 (162)
Q Consensus 35 ~~~~vrv~G~V~~gSv~~~~~~~~~~F~vtD~~~~i~V~Y~G-~~Pd~F~eg~~VVve-G~~~ 95 (162)
.++.+.+.|+|..=...+ .........|-|...+|++..=+ ..-+.|++|..|.++ |+.+
T Consensus 14 ~~~~v~v~~~V~~~~~~~-~~~~~~~~~l~DeTG~I~~t~W~~~~~~~~~~G~~V~i~n~~v~ 75 (109)
T 2kbn_A 14 NGQWANLKAKVIQLWENT-HESISQVGLLGDETGIIKFTIWKNAELPLLEQGESYLLRSVVVG 75 (109)
T ss_dssp TTCEEEEEEEEEEEEECC-CSSEEEEEEEECTTCCEEEEEEGGGCCCCCCTTCEEEEEEEEEE
T ss_pred CCCcEEEEEEEEEeEcCC-CCeEEEEEEEECCCCeEEEEEECcccccccCCCCEEEEEEEEEE
Confidence 367899999997422211 12345568888988888888776 555699999999999 5554
No 31
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=48.96 E-value=64 Score=22.45 Aligned_cols=60 Identities=23% Similarity=0.287 Sum_probs=42.0
Q ss_pred CcEEEeEEEecC-cEEecCCC-ceEEEEEEeC-----CeE-------EEEEEcCCCC----CCCCCCCeEEEEEEEcC
Q 041604 37 NKFRLGGLVLEG-SVAHPASS-SEMEFVVTDL-----VTD-------ILVRYQGSLP----DLFREGHSVVVEGFIKP 96 (162)
Q Consensus 37 ~~vrv~G~V~~g-Sv~~~~~~-~~~~F~vtD~-----~~~-------i~V~Y~G~~P----d~F~eg~~VVveG~~~~ 96 (162)
+++.|.|.+... .+.+.+++ ....|.|.-. ..- ++|..-|.+- .-++.|..|.|+|++..
T Consensus 3 N~v~L~G~l~~dpelR~t~~G~~v~~f~lA~~~~~~~~~~~r~~~~~~~vv~~g~~Ae~~~~~l~KG~~V~V~G~L~~ 80 (104)
T 1txy_A 3 NRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISC 80 (104)
T ss_dssp EEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSTTHHHHTTCCTTCEEEEEEEEEC
T ss_pred EEEEEEEEECCCceEEECCCCCEEEEEEEEEeCccccCCceeceeEEEEEEEEhHHHHHHHhhCCCCCEEEEEEEEEe
Confidence 478899988654 46665544 4577888532 123 8888878654 45789999999999974
No 32
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=48.88 E-value=82 Score=23.62 Aligned_cols=54 Identities=15% Similarity=0.099 Sum_probs=39.4
Q ss_pred CcEEEeEEEecCcEEecCCCceEEEEEEe--------CCeEEEEEEcCCCCCCC---CCCCeEEEEEEEc
Q 041604 37 NKFRLGGLVLEGSVAHPASSSEMEFVVTD--------LVTDILVRYQGSLPDLF---REGHSVVVEGFIK 95 (162)
Q Consensus 37 ~~vrv~G~V~~gSv~~~~~~~~~~F~vtD--------~~~~i~V~Y~G~~Pd~F---~eg~~VVveG~~~ 95 (162)
+.+|+.|.|+ |-.....+=|...| +..+|-|+++.+..+.| ++|+.|..+=.-.
T Consensus 6 ~l~~~~G~Vk-----wfn~~kGfGFI~~~~~~g~p~~~g~DvFvH~s~i~~~g~~~l~eG~~V~f~~~~g 70 (148)
T 3ts2_A 6 QLLHGAGICK-----WFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKS 70 (148)
T ss_dssp CCEEEEEEEE-----EEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCSSSSCCCCTTCEEEEEEEEE
T ss_pred ccccceeEEE-----EEECCCCeeEEeeCccccccCCCCccEEEEhHHhcccCCccCCCCCEEEEEEEEc
Confidence 5788888875 32234568898876 45899999999988765 6899887665544
No 33
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=45.45 E-value=1.1e+02 Score=24.36 Aligned_cols=73 Identities=11% Similarity=0.152 Sum_probs=52.0
Q ss_pred eeeCHHHHHhhcCCCCCCCcEEEeEEEec-CcEEec--CC-CceEEEEEEeCC-----eEEEEEEc----CCCCCCCCCC
Q 041604 19 FYVTPSEALEKYQSNPSKNKFRLGGLVLE-GSVAHP--AS-SSEMEFVVTDLV-----TDILVRYQ----GSLPDLFREG 85 (162)
Q Consensus 19 yy~tpsE~~~~~~~~~~~~~vrv~G~V~~-gSv~~~--~~-~~~~~F~vtD~~-----~~i~V~Y~----G~~Pd~F~eg 85 (162)
-|.+..+++.. ...+..+.|-|.|++ +...+. .. .-.++|+|+|.. ..|.|.|= ..||...+.|
T Consensus 28 ~~~~~r~~l~~---~~~g~~VNviGVVvd~~~P~~S~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~e~LP~V~~~G 104 (187)
T 1qzg_A 28 TFQSIRSSQEL---QKKNTIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVIKQVG 104 (187)
T ss_dssp EEECHHHHTSC---CSSCEEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCSCCCCSTT
T ss_pred eEEEHHHHHhh---ccCCCEEEEEEEEEEccCceecCCCCccEEEEEEEEeCCCCCCCCceEEEEECCChhhCCCCCCCC
Confidence 36688888764 246889999999964 333332 12 467899999965 35776664 4799999999
Q ss_pred CeEEEEEEE
Q 041604 86 HSVVVEGFI 94 (162)
Q Consensus 86 ~~VVveG~~ 94 (162)
+-|.+...-
T Consensus 105 DIIlL~rvk 113 (187)
T 1qzg_A 105 QPLLLHQIT 113 (187)
T ss_dssp CEEEEEEEE
T ss_pred CEEEEEEEE
Confidence 998887654
No 34
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=45.16 E-value=77 Score=22.21 Aligned_cols=57 Identities=9% Similarity=0.081 Sum_probs=41.5
Q ss_pred CCcEEEeEEEec-CcEEecCCCc---eEEEEEEeCCeEEEEEEcCCCCCCCCCCCeEEEE-EEEc
Q 041604 36 KNKFRLGGLVLE-GSVAHPASSS---EMEFVVTDLVTDILVRYQGSLPDLFREGHSVVVE-GFIK 95 (162)
Q Consensus 36 ~~~vrv~G~V~~-gSv~~~~~~~---~~~F~vtD~~~~i~V~Y~G~~Pd~F~eg~~VVve-G~~~ 95 (162)
.+.+.+.+.|.. +......++. -....|.|....|++..=+.. |++|..|.++ |+..
T Consensus 13 ~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG~I~~tlW~~~---l~~Gdvv~i~ng~v~ 74 (106)
T 2k75_A 13 TPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTARIRISSFGKQ---LQDSDVVRIDNARVA 74 (106)
T ss_dssp CSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCEEEEEEESSC---CCTTEEEEEEEEEEE
T ss_pred CceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCCeEEEEEEcCc---cCCCCEEEEEeeEEe
Confidence 345899998863 2221122343 567999999889999988876 9999999999 6653
No 35
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=40.46 E-value=1e+02 Score=22.38 Aligned_cols=64 Identities=17% Similarity=0.163 Sum_probs=46.4
Q ss_pred eCHHHHHhhcCCCCCCCcEEEeEEEecCcEEecCCCceEEEEEEeCCeEEEEEEcCC--CCCCCCCCCeEEEEEEEc
Q 041604 21 VTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYQGS--LPDLFREGHSVVVEGFIK 95 (162)
Q Consensus 21 ~tpsE~~~~~~~~~~~~~vrv~G~V~~gSv~~~~~~~~~~F~vtD~~~~i~V~Y~G~--~Pd~F~eg~~VVveG~~~ 95 (162)
.|+++++.. ..+..|.|.|.+.. ++. .. +|...|...+|.|.-.-. .+....+...|.+.|.++
T Consensus 26 ~TV~~a~~~----~Dd~~V~L~G~Iv~-~~~----~d--~Y~F~D~TG~I~VeId~~~w~g~~v~p~~~Vri~GevD 91 (109)
T 1nnx_A 26 TTVESAKSL----RDDTWVTLRGNIVE-RIS----DD--LYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVD 91 (109)
T ss_dssp CCHHHHTTS----CSSEEEEEEEEEEE-EEE----TT--EEEEEETTEEEEEECCGGGSTTCCCCTTSCEEEEEEEE
T ss_pred EeHHHHhhC----cCCCeEEEEEEEEE-EeC----CC--eEEEECCCccEEEEEChhhcCCcccCCCCEEEEEEEEC
Confidence 688888754 35789999998863 222 12 377789999999985432 233556889999999998
No 36
>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=39.43 E-value=25 Score=25.37 Aligned_cols=48 Identities=21% Similarity=0.092 Sum_probs=33.8
Q ss_pred EEEEEEcCCCCCCCCCCCeEEEEEEEcCchhhhhhccccccccccccCCCCeEEEeEEeecCCCCC
Q 041604 69 DILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKY 134 (162)
Q Consensus 69 ~i~V~Y~G~~Pd~F~eg~~VVveG~~~~~~~~~~~~~~~~~~~~~~~~~dg~F~A~~lLaKcpskY 134 (162)
.=.|+|-|.+|..+..|..|=|+ |+. .+ -++ ||++.-.++--.|+-+|
T Consensus 26 rGtVrfvG~~~~~~~~G~wVGVe--lDE---P~----------Gkn---DGsv~G~ryF~~c~~~~ 73 (92)
T 1whm_A 26 SGTVIFCDVLPGKESLGYFVGVD--MDN---PI----------GNW---DGRFDGVQLCSFACVES 73 (92)
T ss_dssp EEEEEEEECCTTCTTTCCEEEEE--ESS---SC----------CCC---CSEETTEESCSSCCTTT
T ss_pred eEEEEEEecCCCcCCCCeEEEEE--cCC---CC----------CCC---CCeECCEEeccccCCCc
Confidence 34789999999877778777666 762 12 111 88888888776777665
No 37
>3zxf_A Galectin-7; sugar binding protein; 1.38A {Homo sapiens} SCOP: b.29.1.3 PDB: 1bkz_A 2gal_A* 3gal_A* 4gal_A* 5gal_A* 3zxe_A*
Probab=38.35 E-value=25 Score=25.78 Aligned_cols=26 Identities=31% Similarity=0.562 Sum_probs=23.5
Q ss_pred EEEEcCCCCCCCCCCCeEEEEEEEcC
Q 041604 71 LVRYQGSLPDLFREGHSVVVEGFIKP 96 (162)
Q Consensus 71 ~V~Y~G~~Pd~F~eg~~VVveG~~~~ 96 (162)
+|=|.+.+|.-++.|..|++.|+..+
T Consensus 5 ~vP~~~~i~~gl~~G~~i~I~G~v~~ 30 (138)
T 3zxf_A 5 NVPHKSSLPEGIRPGTVLRIRGLVPP 30 (138)
T ss_dssp CCCEEEECTTCCCSSEEEEEEEEECT
T ss_pred ccCEEeecCCCCCCCCEEEEEEEECC
Confidence 46699999999999999999999974
No 38
>3nv1_A Galectin-9, galectin 9 short isoform variant; sugar binding, sugar binding protein; 1.50A {Homo sapiens} SCOP: b.29.1.0 PDB: 3nv2_A* 3nv3_A* 3nv4_A*
Probab=37.77 E-value=31 Score=25.33 Aligned_cols=28 Identities=11% Similarity=0.240 Sum_probs=24.7
Q ss_pred EEEEEEcCCCCCCCCCCCeEEEEEEEcC
Q 041604 69 DILVRYQGSLPDLFREGHSVVVEGFIKP 96 (162)
Q Consensus 69 ~i~V~Y~G~~Pd~F~eg~~VVveG~~~~ 96 (162)
.++|=|.+.+|.-++.|..|++.|+..+
T Consensus 5 ~~~vP~~~~i~~gl~~G~~i~I~G~v~~ 32 (138)
T 3nv1_A 5 AYPMPFITTILGGLYPSKSILLSGTVLP 32 (138)
T ss_dssp CCCSSEEEECTTCCCTTCEEEEEEEECT
T ss_pred ccCcCEEeeCCCCCCCCCEEEEEEEECC
Confidence 3466799999999999999999999975
No 39
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=37.12 E-value=1.2e+02 Score=27.42 Aligned_cols=47 Identities=21% Similarity=0.180 Sum_probs=39.5
Q ss_pred EEEEEEeCCeEEEEEEcCCCCCCCCCCCeEEEEEEEcCchhhhhhccccccccccccCCCCeEEEeEEe
Q 041604 59 MEFVVTDLVTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVL 127 (162)
Q Consensus 59 ~~F~vtD~~~~i~V~Y~G~~Pd~F~eg~~VVveG~~~~~~~~~~~~~~~~~~~~~~~~~dg~F~A~~lL 127 (162)
-...|.|...+|++.- -...+.+-.|.-|-|.|+... +|.|.+.+|+
T Consensus 138 D~l~LEDesGRv~L~g-~~~~~~lVTG~VvaV~G~~~~---------------------~G~F~V~di~ 184 (476)
T 3e0j_A 138 DELVLEDELQRIKLKG-TIDVSKLVTGTVLAVFGSVRD---------------------DGKFLVEDYC 184 (476)
T ss_dssp CEEEEECSSCEEEEEE-SCCTTTCCTTCEEEEEEEECT---------------------TSSEEEEEEE
T ss_pred ceEEEECCCCEEEEEE-EcccccccCCcEEEEEEEEcC---------------------CCeEEEEEEE
Confidence 3689999998888875 356788999999999999974 6889999876
No 40
>3zsj_A Galectin-3; sugar binding protein; HET: LAT; 0.86A {Homo sapiens} SCOP: b.29.1.3 PDB: 2nmn_A* 2nn8_A* 2nmo_A* 3t1m_A* 3t1l_A* 1kjl_A* 1kjr_A* 1a3k_A* 2xg3_A* 3zsk_A 3zsl_A 3zsm_A 3ayc_A* 3aya_A* 3ayd_A* 3aye_A*
Probab=36.61 E-value=15 Score=27.13 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=23.8
Q ss_pred EEEEEcCCCCCCCCCCCeEEEEEEEcC
Q 041604 70 ILVRYQGSLPDLFREGHSVVVEGFIKP 96 (162)
Q Consensus 70 i~V~Y~G~~Pd~F~eg~~VVveG~~~~ 96 (162)
++|=|.+.+|.-++.|..+++.|+..+
T Consensus 2 l~vP~~~~i~~gl~~G~~i~I~G~v~~ 28 (138)
T 3zsj_A 2 LIVPYNLPLPGGVVPRMLITILGTVKP 28 (138)
T ss_dssp BCSSEEEECTTCCCTTEEEEEEEEECT
T ss_pred cccCEEeecCCCCCCCCEEEEEEEECC
Confidence 345689999999999999999999975
No 41
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=36.32 E-value=86 Score=20.22 Aligned_cols=48 Identities=19% Similarity=0.240 Sum_probs=34.8
Q ss_pred CcEEecCCCceEEEEEEeCCeEEEEEEcCCCCCC---CCCCCeEEEEEEEc
Q 041604 48 GSVAHPASSSEMEFVVTDLVTDILVRYQGSLPDL---FREGHSVVVEGFIK 95 (162)
Q Consensus 48 gSv~~~~~~~~~~F~vtD~~~~i~V~Y~G~~Pd~---F~eg~~VVveG~~~ 95 (162)
|.|+|=.....+=|.-.|...++-|+++.+..+- .++|+.|..+=.-.
T Consensus 4 G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~ 54 (66)
T 1c9o_A 4 GKVKWFNNEKGYGFIEVEGGSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQG 54 (66)
T ss_dssp EEEEEEETTTTEEEEEETTEEEEEEEGGGBCSSSCCCCCTTCEEEEEEEEE
T ss_pred eEEEEEECCCCeEEEecCCCccEEEEHHHccccCCCCCCCCCEEEEEEEEC
Confidence 5556533345688998887799999999987663 56899987765443
No 42
>3vkl_A Galectin-8; beta-sandwich, carbohydrate binding, oligosaccharide, sugar protein; HET: GAL BGC; 2.55A {Homo sapiens} PDB: 3naj_A* 3vkm_A* 4fqz_A* 3ojb_A
Probab=35.81 E-value=28 Score=28.83 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=23.1
Q ss_pred EEEEEcCCCCCCCCCCCeEEEEEEEcC
Q 041604 70 ILVRYQGSLPDLFREGHSVVVEGFIKP 96 (162)
Q Consensus 70 i~V~Y~G~~Pd~F~eg~~VVveG~~~~ 96 (162)
..+-|.+.+|.-|..|..+++.|+..+
T Consensus 157 ~~~P~~~~i~~gl~pG~~i~I~G~v~~ 183 (291)
T 3vkl_A 157 MRLPFAARLNTPMGPGRTVVVKGEVNA 183 (291)
T ss_dssp BCSSEEEECSSCCCTTCEEEEEEEECT
T ss_pred cCccccccCCCCCCCCCEEEEEEEECC
Confidence 445577889999999999999999975
No 43
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=34.80 E-value=21 Score=27.74 Aligned_cols=62 Identities=18% Similarity=0.204 Sum_probs=38.6
Q ss_pred CCCcEEEeEEEecCcEEecCCCceEEEEEEeC-------CeE---EEEEEcC-C----CCCCCCCCCeEEEEEEEcC
Q 041604 35 SKNKFRLGGLVLEGSVAHPASSSEMEFVVTDL-------VTD---ILVRYQG-S----LPDLFREGHSVVVEGFIKP 96 (162)
Q Consensus 35 ~~~~vrv~G~V~~gSv~~~~~~~~~~F~vtD~-------~~~---i~V~Y~G-~----~Pd~F~eg~~VVveG~~~~ 96 (162)
.-+++.|.|.|..-...+.......+|.|.=. ... +.|+=-| . +-+.+++|..|+|+|++.-
T Consensus 43 ~vN~VvLmGRvtdpq~ry~~~~~Va~FtLAV~~~~~r~ge~~tdf~~V~vfGg~lAE~i~~ylkkG~rVlVeGRLrm 119 (148)
T 3stb_C 43 CVNHCVMLGVVQNIQEGFVFEDKVLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQLRDGEWFLVTGRLRM 119 (148)
T ss_dssp CSEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCCTTSCSEEEEEEEECSHHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred ecceEEEEEEecCccccccCCCcEEEEEEEEecCCCCCCCCccceEEEEEECChHHHHHHHHhcCCCEEEEEEEEEc
Confidence 45789999999633333322335677887531 112 3444333 2 4457899999999999973
No 44
>3i8t_A Galectin-4; S-type lectin, carbohydrate binding, molecular recognition, sugar binding protein; HET: LBT; 2.10A {Mus musculus} PDB: 2dyc_A
Probab=34.12 E-value=37 Score=25.97 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=23.3
Q ss_pred EEEEcCCCCCCCCCCCeEEEEEEEcC
Q 041604 71 LVRYQGSLPDLFREGHSVVVEGFIKP 96 (162)
Q Consensus 71 ~V~Y~G~~Pd~F~eg~~VVveG~~~~ 96 (162)
.|=|.+.+|.-++.|..|++.|+..+
T Consensus 28 ~vPy~~~ipggL~~G~~I~I~G~v~~ 53 (164)
T 3i8t_A 28 TLPYKRPIPGGLSVGMSVYIQGMAKE 53 (164)
T ss_dssp CSSEEEECTTCCCTTCEEEEEEEECT
T ss_pred CCCeeeeCCCCCCCCCEEEEEEEECC
Confidence 55689999999999999999999974
No 45
>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=33.82 E-value=1.1e+02 Score=27.51 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=50.2
Q ss_pred CCCcEEEeEEEecCcEEecC--CCceEEEEEE---eCCeEEEEEEcCCCCCCCCCCCeEEEEEEEcCchhhhhhcccccc
Q 041604 35 SKNKFRLGGLVLEGSVAHPA--SSSEMEFVVT---DLVTDILVRYQGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKS 109 (162)
Q Consensus 35 ~~~~vrv~G~V~~gSv~~~~--~~~~~~F~vt---D~~~~i~V~Y~G~~Pd~F~eg~~VVveG~~~~~~~~~~~~~~~~~ 109 (162)
+...|.+-|.|...|...+. +...+...-. ..+..++.......--.|-.|+.|.++|+.-.
T Consensus 45 sq~~v~~vGRI~~Ds~~~egkLn~~Sl~LE~sr~~g~G~rV~Ldls~l~~~slFPGQIVav~G~N~~------------- 111 (460)
T 3flo_A 45 SQSEIYAVGRIVPDSPTYDKFLNPESLSLETSRMGGVGRRVRLDLSQVNELSFFLGQIVAFKGKNAN------------- 111 (460)
T ss_dssp CSSCEEEEEEEEESSSSCCSCCCTTSEEEECCHHHHTTCEEEEECTTCCCEEECTTCEEEEEEECSS-------------
T ss_pred ccccEEEEEEEeeCCCCCCCCcchhheEEEeccccCCCeEEEeecccCCceeecCCCEEEEEEEcCC-------------
Confidence 56789999999766532111 1122322221 23588898888877667889999999999642
Q ss_pred ccccccCCCCeEEEeEEee
Q 041604 110 VSENARSRDCFFSATDVLA 128 (162)
Q Consensus 110 ~~~~~~~~dg~F~A~~lLa 128 (162)
+..|.|++|+.
T Consensus 112 --------G~~f~v~ei~~ 122 (460)
T 3flo_A 112 --------GDYFTVNSILP 122 (460)
T ss_dssp --------SSCEEEEEECC
T ss_pred --------CCEEEEeeecc
Confidence 57899999984
No 46
>3ap9_A Galectin-8; beta-sandwich, carbohydrate/sugar binding, lacto-N fucopentaose III, sugar binding protein; HET: GAL FUC NAG BGC; 1.33A {Homo sapiens} PDB: 3ap4_A 3ap5_A* 3ap6_A* 3ap7_A* 3apb_A 2yv8_A 2yxs_A*
Probab=33.35 E-value=35 Score=25.49 Aligned_cols=26 Identities=23% Similarity=0.692 Sum_probs=23.1
Q ss_pred EEEEcCCCCCCCCCCCeEEEEEEEcC
Q 041604 71 LVRYQGSLPDLFREGHSVVVEGFIKP 96 (162)
Q Consensus 71 ~V~Y~G~~Pd~F~eg~~VVveG~~~~ 96 (162)
.|-|.+.+|.-++.|..|++.|+..+
T Consensus 16 ~vPf~~~i~~gl~~G~~i~I~G~v~~ 41 (154)
T 3ap9_A 16 VIPFVGTIPDQLDPGTLIVIRGHVPS 41 (154)
T ss_dssp CSSEEEECCSCCCTTCEEEEEEECCT
T ss_pred CCCEEEECCCCCccCCEEEEEEEECC
Confidence 45588999999999999999999964
No 47
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=32.93 E-value=74 Score=20.58 Aligned_cols=48 Identities=23% Similarity=0.248 Sum_probs=34.6
Q ss_pred CcEEecCCCceEEEEEEeCCeEEEEEEcCCCCC---CCCCCCeEEEEEEEc
Q 041604 48 GSVAHPASSSEMEFVVTDLVTDILVRYQGSLPD---LFREGHSVVVEGFIK 95 (162)
Q Consensus 48 gSv~~~~~~~~~~F~vtD~~~~i~V~Y~G~~Pd---~F~eg~~VVveG~~~ 95 (162)
|.|+|=.....+=|.-.|...++-|+++.+..+ ..++|+.|..+=...
T Consensus 3 G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~ 53 (66)
T 1g6p_A 3 GKVKWFDSKKGYGFITKDEGGDVFVHWSAIEMEGFKTLKEGQVVEFEIQEG 53 (66)
T ss_dssp EEEEEEETTTTEEEEEETTSCBCBBCSSSSCCSSCCCCCSSSEEEEEEECS
T ss_pred EEEEEEECCCCEEEEecCCCceEEEEhHHccccCCCCCCCCCEEEEEEEEC
Confidence 445553334568899888779999999988765 467899987765443
No 48
>2d6m_A Galectin-9, lectin, galactose binding, soluble 9; beta sandwich, carbohydrate binding protein, sugar binding protein; HET: LBT; 1.60A {Mus musculus} PDB: 2d6l_X 2d6k_A* 2d6n_A* 2d6p_A* 2d6o_X*
Probab=32.31 E-value=43 Score=25.29 Aligned_cols=27 Identities=22% Similarity=0.484 Sum_probs=24.0
Q ss_pred EEEEEcCCCCCCCCCCCeEEEEEEEcC
Q 041604 70 ILVRYQGSLPDLFREGHSVVVEGFIKP 96 (162)
Q Consensus 70 i~V~Y~G~~Pd~F~eg~~VVveG~~~~ 96 (162)
.+|-|.+.+|.-++.|..|++.|+..+
T Consensus 15 p~vPf~~~i~~gl~~G~~i~I~G~v~~ 41 (159)
T 2d6m_A 15 PIIPFTGPIQGGLQEGLQVTLQGTTKS 41 (159)
T ss_dssp CCSSEEEECTTCCCTTCEEEEEEEECS
T ss_pred CCCCEEEECCCCCccCCEEEEEEEECC
Confidence 356799999999999999999999975
No 49
>2yro_A Galectin-8; GAL-BIND lectin, sugar binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.29 E-value=41 Score=25.34 Aligned_cols=28 Identities=21% Similarity=0.425 Sum_probs=25.0
Q ss_pred EEEEEEcCCCCCCCCCCCeEEEEEEEcC
Q 041604 69 DILVRYQGSLPDLFREGHSVVVEGFIKP 96 (162)
Q Consensus 69 ~i~V~Y~G~~Pd~F~eg~~VVveG~~~~ 96 (162)
.++|-|.+.+|.-++.|..|++.|+..+
T Consensus 14 ~~~vPf~~~ip~gl~~G~~i~I~G~v~~ 41 (155)
T 2yro_A 14 QLSLPFAARLNTPMGPGRTVVVKGEVNA 41 (155)
T ss_dssp CCCSSEEEECSSCCCTTCEEEEEEEECT
T ss_pred ccccCEeeecCCCCccCCEEEEEEEECC
Confidence 3477899999999999999999999974
No 50
>2xvs_A Tetratricopeptide repeat protein 5; antitumor protein, P53 cofactor, stress-response; 1.80A {Homo sapiens}
Probab=29.42 E-value=1.3e+02 Score=23.56 Aligned_cols=63 Identities=16% Similarity=0.035 Sum_probs=41.4
Q ss_pred eCHHHHHhhcCCCCCCCcEEEeEEEecCcEEecCCCceEEEEEEeCC-eEEEEEEcCCCCCC-CCCCCeEEE
Q 041604 21 VTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLV-TDILVRYQGSLPDL-FREGHSVVV 90 (162)
Q Consensus 21 ~tpsE~~~~~~~~~~~~~vrv~G~V~~gSv~~~~~~~~~~F~vtD~~-~~i~V~Y~G~~Pd~-F~eg~~VVv 90 (162)
.+.++|... -...+-+-|.|+ +++.++ +...+.|.+.|.. .-.-|.=.+.-.+- |..|+.|.+
T Consensus 64 ~~l~~L~~G-----~N~g~vv~gKVv-~~i~~e-~~vP~~f~~vD~~g~c~avsVYNl~~~~G~~iGDsV~I 128 (166)
T 2xvs_A 64 KPLSTLQPG-----VNSGAVILGKVV-FSLTTE-EKVPFTFGLVDSDGPCYAVMVYNIVQSWGVLIGDSVAI 128 (166)
T ss_dssp CCGGGCCSE-----ECTTEEEEEEEE-EEECCT-TCCSEEEEEESSSSCCEEEEECCCCSSCCCCTTCEEEE
T ss_pred eeHHHcccc-----cCCCcEEEEEEE-EEecCC-CCCceEEEEECCCCCEEEEEEEeccCCcceEecCEEEe
Confidence 455555443 244566777775 466664 5688999999987 44455545555555 788888865
No 51
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=28.34 E-value=1.3e+02 Score=19.75 Aligned_cols=47 Identities=19% Similarity=0.204 Sum_probs=32.6
Q ss_pred cEEecCCCceEEEEEEeCC-eEEEEEEcCCCCCC---CCCCCeEEEEEEEc
Q 041604 49 SVAHPASSSEMEFVVTDLV-TDILVRYQGSLPDL---FREGHSVVVEGFIK 95 (162)
Q Consensus 49 Sv~~~~~~~~~~F~vtD~~-~~i~V~Y~G~~Pd~---F~eg~~VVveG~~~ 95 (162)
.|+|=.....+=|...|.. .++-|+++.+..+. .++|+.|..+=.-.
T Consensus 9 ~Vk~fn~~kGfGFI~~~~g~~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~ 59 (71)
T 3i2z_B 9 NVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNG 59 (71)
T ss_dssp EEEEEETTTTEEEEEETTCCCCEEEEGGGBCCSSCCCCCTTCEEEEEEEEE
T ss_pred EEEEEECCCCcEEEecCCCCccEEEEhHHcccccCcCCCCCCEEEEEEEEC
Confidence 3344323456889888766 89999999887654 46899887665444
No 52
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=28.08 E-value=1.7e+02 Score=22.32 Aligned_cols=56 Identities=16% Similarity=0.091 Sum_probs=40.7
Q ss_pred CCcEEEeEEEecCcEEecCCCceEEEEEEeCCe-EEEEEEcCCC-------CCCCCCCCeEEEEEEEc
Q 041604 36 KNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVT-DILVRYQGSL-------PDLFREGHSVVVEGFIK 95 (162)
Q Consensus 36 ~~~vrv~G~V~~gSv~~~~~~~~~~F~vtD~~~-~i~V~Y~G~~-------Pd~F~eg~~VVveG~~~ 95 (162)
=+.|+|.|.|.. ++.. ...+.|.|-|... .|.+..-=.. ......|.-|-|.|++.
T Consensus 47 I~~V~IvGiVv~--~~~~--~~~~~ytIDD~TG~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G~v~ 110 (159)
T 3kf6_A 47 IRWIQIVGYIAA--IDIY--EGKHVLTVDDCSGMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKIN 110 (159)
T ss_dssp ECEEEEEEEEEE--EEEE--TTEEEEEEECSSSCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEEEEE
T ss_pred EEEEEEEEEEEE--EEEe--CCEEEEEEecCCCCeEEEEEEccCCCCcccccccCCCCCEEEEEEEEE
Confidence 368999999973 4433 3578899999854 6888774222 22378999999999996
No 53
>2zhn_A Galectin-9; beta sandwich, carbohydrate binding protein, sugar protein; HET: NAG GAL; 1.30A {Homo sapiens} PDB: 2eak_A* 2eal_A* 2zhk_A* 2zhm_A* 2zhl_A* 2yy1_A* 3lsd_A 3lse_A*
Probab=27.94 E-value=36 Score=25.22 Aligned_cols=23 Identities=22% Similarity=0.583 Sum_probs=21.5
Q ss_pred EEEcCCCCCCCCCCCeEEEEEEE
Q 041604 72 VRYQGSLPDLFREGHSVVVEGFI 94 (162)
Q Consensus 72 V~Y~G~~Pd~F~eg~~VVveG~~ 94 (162)
|-|.+.+|.-++.|..|++.|+.
T Consensus 15 vP~~~~i~~gl~~G~~i~I~G~~ 37 (148)
T 2zhn_A 15 VPFSGTIQGGLQDGLQITVNGTV 37 (148)
T ss_dssp SSEEEECTTCCCTTCEEEEEEEE
T ss_pred CCEEEECCCCCccCCEEEEEEEE
Confidence 66899999999999999999988
No 54
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=27.05 E-value=2.2e+02 Score=22.15 Aligned_cols=67 Identities=21% Similarity=0.234 Sum_probs=48.5
Q ss_pred CcEEEeEEEecCcEEecCCCceEEEEEEeCCeEEEEEEcCCCCC---CCCCCCeEEEEEEEcCchhhhhhcccccccccc
Q 041604 37 NKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYQGSLPD---LFREGHSVVVEGFIKPITEEIKNVKSEKSVSEN 113 (162)
Q Consensus 37 ~~vrv~G~V~~gSv~~~~~~~~~~F~vtD~~~~i~V~Y~G~~Pd---~F~eg~~VVveG~~~~~~~~~~~~~~~~~~~~~ 113 (162)
..+-+.|.|++ . ++.. |.+.|+...+.|.--..+|. -|+.|.-|.|.|.+.+.
T Consensus 59 s~VWmQG~VV~--~----~~g~--~~LdDgTG~~~v~g~~~vp~g~p~l~~G~YVMV~G~v~~~---------------- 114 (150)
T 3mxn_B 59 AAVWMQGRVVM--A----DRGE--ARLRDPSGDFSVRGLERVPRGRPCLVPGKYVMVMGVVQAC---------------- 114 (150)
T ss_dssp SEEEEEEEEEE--E----ETTE--EEEEETTEEEEEECGGGSCCCSCCCSTTCEEEEEEEEEEC----------------
T ss_pred EEEEEEeEEEE--e----CCCe--EEEECCCceEEEeeccccCCCCcccCCCCEEEEEEEEEec----------------
Confidence 45667787765 1 2223 99999998899977777766 58999999999999741
Q ss_pred ccCCCCeEEEeEEeec
Q 041604 114 ARSRDCFFSATDVLAK 129 (162)
Q Consensus 114 ~~~~dg~F~A~~lLaK 129 (162)
+..-.+.|-+|.-=
T Consensus 115 --s~eP~i~AvKm~DL 128 (150)
T 3mxn_B 115 --SPEPCLQAVKMTDL 128 (150)
T ss_dssp --SSSCEEEEEEEEEC
T ss_pred --CCCceEEEEEeeeC
Confidence 11457888877643
No 55
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} SCOP: b.7.3.0 PDB: 3ft9_A
Probab=26.99 E-value=56 Score=23.42 Aligned_cols=29 Identities=17% Similarity=0.156 Sum_probs=21.8
Q ss_pred eEEEEEEeCCeEEEEEEcCCCCCCCCCCCe
Q 041604 58 EMEFVVTDLVTDILVRYQGSLPDLFREGHS 87 (162)
Q Consensus 58 ~~~F~vtD~~~~i~V~Y~G~~Pd~F~eg~~ 87 (162)
.+.|+||.....-.|. ..++|.+|+-|+.
T Consensus 64 plSfRvt~~~G~~~v~-~nViPa~W~~G~t 92 (100)
T 3ft1_A 64 PFNFRFMSKGGMRNVF-DEVIPTAFSIGKT 92 (100)
T ss_dssp SEEEEEEETTCCEEEE-EEEECTTCCTTCE
T ss_pred CEEEEEEEcCCcEEEE-CeEeCCCCCCCcE
Confidence 6889998766444444 4599999999874
No 56
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=25.41 E-value=1.1e+02 Score=30.72 Aligned_cols=62 Identities=23% Similarity=0.243 Sum_probs=33.1
Q ss_pred CCCcEEEeEEEecCcEEecCCCceEE-EEEEeCCeEEEEEEcC----CCCCCCCCCCeEEEEEEEcC
Q 041604 35 SKNKFRLGGLVLEGSVAHPASSSEME-FVVTDLVTDILVRYQG----SLPDLFREGHSVVVEGFIKP 96 (162)
Q Consensus 35 ~~~~vrv~G~V~~gSv~~~~~~~~~~-F~vtD~~~~i~V~Y~G----~~Pd~F~eg~~VVveG~~~~ 96 (162)
.++.++|.|+|..-.......+..+. ++|.|....+.|+.-. ...+.+.++.-++|+|+++.
T Consensus 1041 ~g~~v~v~G~v~~~~~~~Tk~G~~maf~tleD~tg~~evvvf~~~~~~~~~~l~~~~~~~v~G~v~~ 1107 (1220)
T 2hpi_A 1041 GKPKVLLSGMVEEVVRKPTRSGGMMARFTLSDETGALEVVVFGRAYEGVSPKLKEDIPLLVLAEVEK 1107 (1220)
T ss_dssp SSCEEEEEEEECCC------------CEEEEETTEEEEEC-------------CTTCEEEEEEEEC-
T ss_pred CCCeEEEEEEEEEEEEeecCCCCeEEEEEEEECCCCEEEEEcHHHHHHHHHHhccCCEEEEEEEEEE
Confidence 56789999999743333333444455 5688888777766322 34567889999999999973
No 57
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=24.46 E-value=99 Score=21.85 Aligned_cols=76 Identities=20% Similarity=0.285 Sum_probs=48.6
Q ss_pred CcEEEeEEEec-CcEEecCCC-ceEEEEEEeC------C-----e-EEEEEEcCCC--CCCCCCCCeEEEEEEEcCchhh
Q 041604 37 NKFRLGGLVLE-GSVAHPASS-SEMEFVVTDL------V-----T-DILVRYQGSL--PDLFREGHSVVVEGFIKPITEE 100 (162)
Q Consensus 37 ~~vrv~G~V~~-gSv~~~~~~-~~~~F~vtD~------~-----~-~i~V~Y~G~~--Pd~F~eg~~VVveG~~~~~~~~ 100 (162)
+++.|.|.+.. -.+.+.+++ ....|.|.-. + . .++|+--|.+ =..++.|..|.|+|++...
T Consensus 8 Nkv~LiG~L~~dPelRytp~G~~v~~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk~Ae~~~l~KG~~v~veGrL~~r--- 84 (103)
T 3k8a_A 8 NLVSLAALIEKAFPIRYTPAGIPVLDIILKHESWQEENGQQCLVQLEIPARILGRQAEEWQYRQGDCATVEGFLAQK--- 84 (103)
T ss_dssp EEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHHHSTTCTTCEEEEEEEEEES---
T ss_pred cEEEEEEEECCCCceEECCCCCEEEEEEEEEcccCccCCCEEEeeEEEEEEEEhHHhhhhccCCCCEEEEEEEEEEC---
Confidence 68999998853 456666554 4567887631 1 1 2566665522 2348999999999999731
Q ss_pred hhhccccccccccccCCCCeEEEeEEe
Q 041604 101 IKNVKSEKSVSENARSRDCFFSATDVL 127 (162)
Q Consensus 101 ~~~~~~~~~~~~~~~~~dg~F~A~~lL 127 (162)
|- .+..=+|+|++|-
T Consensus 85 ----------s~--~~~~lvlhi~~i~ 99 (103)
T 3k8a_A 85 ----------SR--RSLMPMLRIQNIK 99 (103)
T ss_dssp ----------SS--SCCCEEEEEEEEE
T ss_pred ----------cc--CCccEEEEEEEEE
Confidence 11 1225579998764
No 58
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=24.03 E-value=1.6e+02 Score=19.57 Aligned_cols=63 Identities=14% Similarity=0.083 Sum_probs=43.6
Q ss_pred CcEEecCCCceEEEEEEeCCeEEEEEEcCCCCC-CCCCCCeEEEEEEEcCchhhhhhccccccccccccCCCCeEEEeEE
Q 041604 48 GSVAHPASSSEMEFVVTDLVTDILVRYQGSLPD-LFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDV 126 (162)
Q Consensus 48 gSv~~~~~~~~~~F~vtD~~~~i~V~Y~G~~Pd-~F~eg~~VVveG~~~~~~~~~~~~~~~~~~~~~~~~~dg~F~A~~l 126 (162)
|.|+|=.....+=|.-.|.+...-|.|+.+.-+ ..++|+.|..+=.-.+ .| ..|.+|
T Consensus 5 G~Vkwfn~~KGfGFI~~~dg~~dFvH~s~i~~~g~l~~G~~V~F~~~~g~---------------------kG-~~A~~V 62 (74)
T 2k5n_A 5 GTITTWFKDKGFGFIKDENGDNRYFHVIKVANPDLIKKDAAVTFEPTTNN---------------------KG-LSAYAV 62 (74)
T ss_dssp EEEEEEETTTTEEEEEESSSCEEEEEGGGBSSGGGCCTTCEEEEEEEECS---------------------SS-EEEEEE
T ss_pred eEEEEEECCCCeEEEecCCCCceEEEHhHcccCCCCCCCCEEEEEEEeCC---------------------CC-ceeEEE
Confidence 445553345678899888765458888776544 6799999987755543 56 889988
Q ss_pred eecCCC
Q 041604 127 LAKHDE 132 (162)
Q Consensus 127 LaKcps 132 (162)
..--++
T Consensus 63 ~~~~~~ 68 (74)
T 2k5n_A 63 KVVPLE 68 (74)
T ss_dssp EECCSS
T ss_pred EeCCCc
Confidence 765544
No 59
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense}
Probab=23.70 E-value=75 Score=23.20 Aligned_cols=29 Identities=17% Similarity=0.156 Sum_probs=22.1
Q ss_pred eEEEEEEeCCeEEEEEEcCCCCCCCCCCCe
Q 041604 58 EMEFVVTDLVTDILVRYQGSLPDLFREGHS 87 (162)
Q Consensus 58 ~~~F~vtD~~~~i~V~Y~G~~Pd~F~eg~~ 87 (162)
.+.|+||-....-.|. ..++|..|+-|+.
T Consensus 75 plSfRvtts~G~~~va-~nViPa~W~~Gqt 103 (108)
T 2jnz_A 75 PFNFRFMSKGGMRNVF-DEVIPTAFSIGKT 103 (108)
T ss_dssp SEEEEEEETTTEEEEE-EEEECSSCCTTCE
T ss_pred CEEEEEEEcCCcEEEE-CeEECCCCCCCCE
Confidence 6889998876554444 5599999998874
No 60
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=23.59 E-value=1e+02 Score=23.60 Aligned_cols=46 Identities=17% Similarity=0.176 Sum_probs=32.3
Q ss_pred ecCcEEecCCCceEEEEEEeCC-eEEEEEEcCCCCC-CCCCCCeEEEE
Q 041604 46 LEGSVAHPASSSEMEFVVTDLV-TDILVRYQGSLPD-LFREGHSVVVE 91 (162)
Q Consensus 46 ~~gSv~~~~~~~~~~F~vtD~~-~~i~V~Y~G~~Pd-~F~eg~~VVve 91 (162)
..|.|+|-.....+=|.-.|.+ .+|-|+|..+.-+ ...+|+.|--+
T Consensus 63 ~~GtVKwFn~~KGfGFI~~ddGg~DVFVH~Sai~~~~~L~eGq~V~Fe 110 (147)
T 3aqq_A 63 YKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGEYVPVEGDEVTYK 110 (147)
T ss_dssp EEEEEEEEETTTTEEEEEESSSCSCEEEEGGGEESSBCCCTTCEEEEE
T ss_pred cceEEEEEeCCCCeEEeccCCCCccEEEEeeeecCCCcCCCCCEEEEE
Confidence 3455565434567889988875 8999999986432 56789988544
No 61
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=23.33 E-value=71 Score=30.02 Aligned_cols=62 Identities=16% Similarity=0.280 Sum_probs=43.4
Q ss_pred CCCcEEEeEEEecCcEEecCCCceEEEEEEeCCeEEEEEEcC--CCCCCCCC--CCeEEEEEEEcC
Q 041604 35 SKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYQG--SLPDLFRE--GHSVVVEGFIKP 96 (162)
Q Consensus 35 ~~~~vrv~G~V~~gSv~~~~~~~~~~F~vtD~~~~i~V~Y~G--~~Pd~F~e--g~~VVveG~~~~ 96 (162)
.+..+.|.|.|..-..........+++.+.|+...+.++|=. -+...|+. |..+++.|++..
T Consensus 164 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~~~~~~~~~~~~g~~~~~~G~~~~ 229 (780)
T 1gm5_A 164 PGEKVTTQGKIVSVETKKFQNMNILTAVLSDGLVHVPLKWFNQDYLQTYLKQLTGKEVFVTGTVKS 229 (780)
T ss_dssp SSCCCEEEECCCCCEEEECSSCEEEEEEECCSSCCEEEEECSCCTTHHHHHTTCSSCEEEEEEECS
T ss_pred CCCEEEEEEEEEEEEeecCCCCeEEEEEEEECCceEEEEEECcHHHHhhCccCCCCEEEEEEEEEE
Confidence 467899999887433322223457788889987667665544 24457889 999999999973
No 62
>1x50_A Galectin-4; GAL-BIND lectin, sugar binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.17 E-value=55 Score=24.86 Aligned_cols=26 Identities=23% Similarity=0.597 Sum_probs=23.2
Q ss_pred EEEEcCCCCCCCCCCCeEEEEEEEcC
Q 041604 71 LVRYQGSLPDLFREGHSVVVEGFIKP 96 (162)
Q Consensus 71 ~V~Y~G~~Pd~F~eg~~VVveG~~~~ 96 (162)
+|-|.+.+|.-++.|..|++.|+..+
T Consensus 26 ~vPf~~~ip~gL~~G~~i~I~G~v~~ 51 (164)
T 1x50_A 26 PVPYFGRLQGGLTARRTIIIKGYVPP 51 (164)
T ss_dssp CSSEEEECSSCSCTTEEEEEEEECCT
T ss_pred CCCEEeeCCCCCccCCEEEEEEEECC
Confidence 34699999999999999999999974
No 63
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=22.41 E-value=3.1e+02 Score=22.16 Aligned_cols=60 Identities=12% Similarity=0.114 Sum_probs=42.2
Q ss_pred CCCcEEEeEEEec-CcEEec-CCCceEEEEEEeCC-eEEEEEEcC----CCCCCCCCCCeEEEEEEE
Q 041604 35 SKNKFRLGGLVLE-GSVAHP-ASSSEMEFVVTDLV-TDILVRYQG----SLPDLFREGHSVVVEGFI 94 (162)
Q Consensus 35 ~~~~vrv~G~V~~-gSv~~~-~~~~~~~F~vtD~~-~~i~V~Y~G----~~Pd~F~eg~~VVveG~~ 94 (162)
.++.+.|-|.|.. +...+. ...-.++|.|+|.. ..|.|.|=- .||.-++.|+.|.+...-
T Consensus 14 ~~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~~gl~v~iF~~~~~~LP~v~~~GDII~l~~vk 80 (294)
T 1xjv_A 14 GGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNVKLTCLLFSGNYEALPIIYKNGDIVRFHRLK 80 (294)
T ss_dssp SSEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTCCEEEEEEEESSGGGSCCCCSTTCEEEEEEEE
T ss_pred CCCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCCCCCEEEEEECCChHHCCCCCCCCCEEEEEEEE
Confidence 3678999999963 222221 23567899999975 457776654 599999999988776543
No 64
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=22.33 E-value=2.3e+02 Score=20.54 Aligned_cols=59 Identities=25% Similarity=0.403 Sum_probs=41.3
Q ss_pred CcEEEeEEEe-cCcEEecCCC-ceEEEEEEeC-----C-------eEEEEEEcCC----CCCCCCCCCeEEEEEEEcC
Q 041604 37 NKFRLGGLVL-EGSVAHPASS-SEMEFVVTDL-----V-------TDILVRYQGS----LPDLFREGHSVVVEGFIKP 96 (162)
Q Consensus 37 ~~vrv~G~V~-~gSv~~~~~~-~~~~F~vtD~-----~-------~~i~V~Y~G~----~Pd~F~eg~~VVveG~~~~ 96 (162)
+++.|.|.+. +-.+.+.+++ ...+|.|.-. . -.|+|+--|- + ..++.|..|.|+|++..
T Consensus 2 NkviL~GrL~~dPelRyTpsG~~V~~f~LA~~~~~~~~g~~r~~~~~i~vv~~Gk~AE~~-~~l~kGs~V~VeGrL~t 78 (115)
T 3fhw_A 2 NTLELSARVLECGAMRHTPAGLPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLL-ADTPLGTEMQVQGFLAP 78 (115)
T ss_dssp EEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEECCCCC--CEEEEEEEEEEETHHHHHH-TTCCTTCEEEEEEEEEE
T ss_pred CEEEEEEEECcCcceEECCCCCEEEEEEEEEcceeecCCCeeeeeEEEEEEEEhHHHHhh-hccCCCCEEEEEEEEEE
Confidence 3678888775 4446776544 4567888632 1 1277887773 4 67999999999999973
No 65
>1pm4_A YPM; jelly roll fold, toxin; 1.75A {Yersinia pseudotuberculosis} SCOP: b.135.1.1 PDB: 1poq_A
Probab=22.18 E-value=17 Score=27.00 Aligned_cols=8 Identities=50% Similarity=0.642 Sum_probs=6.7
Q ss_pred eEEeecCC
Q 041604 124 TDVLAKHD 131 (162)
Q Consensus 124 ~~lLaKcp 131 (162)
.++|+|||
T Consensus 111 sdvl~kcp 118 (119)
T 1pm4_A 111 SDVLTKCP 118 (119)
T ss_dssp GGBCSSCC
T ss_pred cchhhcCC
Confidence 37999998
No 66
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=20.74 E-value=2.2e+02 Score=20.88 Aligned_cols=60 Identities=22% Similarity=0.252 Sum_probs=41.4
Q ss_pred CcEEEeEEEecCc-EEecCC-CceEEEEEEeC--------------CeEEEEEEcCCCC----CCCCCCCeEEEEEEEcC
Q 041604 37 NKFRLGGLVLEGS-VAHPAS-SSEMEFVVTDL--------------VTDILVRYQGSLP----DLFREGHSVVVEGFIKP 96 (162)
Q Consensus 37 ~~vrv~G~V~~gS-v~~~~~-~~~~~F~vtD~--------------~~~i~V~Y~G~~P----d~F~eg~~VVveG~~~~ 96 (162)
++|.|.|.|.... +.+.++ ...++|.|.-. ..-++|+.-|.+- ..++.|..|.|+|++..
T Consensus 6 N~v~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~L~~ 85 (145)
T 1qvc_A 6 NKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQLRT 85 (145)
T ss_dssp EEEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred EEEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHHHHHHhcCCCCEEEEEEEEEe
Confidence 5799999987655 344333 45688988522 1247777777543 35789999999999973
No 67
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=20.33 E-value=3.5e+02 Score=24.44 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=40.1
Q ss_pred CCcEEEeEEEecCcEEecCCCceEEE-EEEeCCeEEEEEEcCC-CCC-------CCCCCCeEEEEEEEc
Q 041604 36 KNKFRLGGLVLEGSVAHPASSSEMEF-VVTDLVTDILVRYQGS-LPD-------LFREGHSVVVEGFIK 95 (162)
Q Consensus 36 ~~~vrv~G~V~~gSv~~~~~~~~~~F-~vtD~~~~i~V~Y~G~-~Pd-------~F~eg~~VVveG~~~ 95 (162)
+..|+|.|+|.. + |.. + .+.| .|.|+...|.|..+.. ++. .++-|..|-|+|.+.
T Consensus 86 g~~V~v~GwV~~--~-R~~-G-k~~Fi~LrD~sg~iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~ 149 (529)
T 4ex5_A 86 SLEVAIAGRMML--K-RVM-G-KASFATVQDGSGQIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLF 149 (529)
T ss_dssp CCEEEEEEEEEE--E-EEE-T-TEEEEEEECSSCEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEE
T ss_pred CcEEEEEEEEEe--e-ecC-C-CeEEEEEEeCCeeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEE
Confidence 678999999962 3 322 3 3565 5788888898888642 331 477899999999996
Done!