AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.
Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on
Query Sequence

>041607
MTGLVMMTKGGGCAGGDGGMGRRQKERERLKRNRTSSRWWREDVISAVHNMEIGCPTNVR
HITHATFDRFNDFLGLPVEFEVEVPCRVPSAR
High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT4G03100 AT4G03100 AT4G03100	protein from Arabidopsis thaliana	1.0e-15
BLAST match view associations BLAST with AT5G22400 AT5G22400 AT5G22400	protein from Arabidopsis thaliana	1.1e-12
BLAST match view associations BLAST with AT3G11490 AT3G11490 AT3G11490	protein from Arabidopsis thaliana	9.3e-12
BLAST match view associations BLAST with ROPGAP3 ROPGAP3 ROPGAP3 ROP guanosine triphosphatase (GTPase)-activating protein 3	protein from Arabidopsis thaliana	1.6e-10
BLAST match view associations BLAST with AT1G08340 AT1G08340 AT1G08340	protein from Arabidopsis thaliana	1.7e-10
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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  041607
        (92 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2139330 - symbol:AT4G03100 species:3702 "Arabi...   203  1.0e-15   1
TAIR|locus:2176392 - symbol:AT5G22400 species:3702 "Arabi...   176  1.1e-12   1
TAIR|locus:2080762 - symbol:AT3G11490 species:3702 "Arabi...   167  9.3e-12   1
TAIR|locus:2062770 - symbol:ROPGAP3 "ROP guanosine tripho...   156  1.6e-10   1
TAIR|locus:2199948 - symbol:AT1G08340 species:3702 "Arabi...   153  1.7e-10   1


>TAIR|locus:2139330 [details] [associations]
            symbol:AT4G03100 species:3702 "Arabidopsis thaliana"
            [GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=ISM] [GO:0007165 "signal transduction" evidence=IEA]
            [GO:0030675 "Rac GTPase activator activity" evidence=ISS]
            [GO:0000226 "microtubule cytoskeleton organization" evidence=RCA]
            [GO:0000911 "cytokinesis by cell plate formation" evidence=RCA]
            [GO:0008283 "cell proliferation" evidence=RCA] InterPro:IPR000095
            InterPro:IPR000198 InterPro:IPR008936 Pfam:PF00620 Pfam:PF00786
            PROSITE:PS50108 PROSITE:PS50238 SMART:SM00285 SMART:SM00324
            GO:GO:0007165 EMBL:CP002687 Gene3D:1.10.555.10 SUPFAM:SSF48350
            GO:GO:0005622 IPI:IPI00534644 RefSeq:NP_192219.2 UniGene:At.21020
            ProteinModelPortal:F4JI46 SMR:F4JI46 PRIDE:F4JI46
            EnsemblPlants:AT4G03100.1 GeneID:828092 KEGG:ath:AT4G03100
            OMA:HITHVTF Uniprot:F4JI46
        Length = 430

 Score = 203 (76.5 bits), Expect = 1.0e-15, P = 1.0e-15
 Identities = 37/48 (77%), Positives = 42/48 (87%)

Query:    44 VISAVHNMEIGCPTNVRHITHATFDRFNDFLGLPVEFEVEVPCRVPSA 91
             + SAVH+MEIG PTNVRHITH TFDRF+ FLGLP E +VE+PCRVPSA
Sbjct:    71 ISSAVHHMEIGWPTNVRHITHVTFDRFHGFLGLPHELQVEIPCRVPSA 118


>TAIR|locus:2176392 [details] [associations]
            symbol:AT5G22400 species:3702 "Arabidopsis thaliana"
            [GO:0005622 "intracellular" evidence=IEA] [GO:0007165 "signal
            transduction" evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM]
            [GO:0030675 "Rac GTPase activator activity" evidence=ISS]
            InterPro:IPR000095 InterPro:IPR000198 InterPro:IPR008936
            Pfam:PF00620 Pfam:PF00786 PROSITE:PS50108 PROSITE:PS50238
            SMART:SM00285 SMART:SM00324 EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0007165 Gene3D:1.10.555.10 SUPFAM:SSF48350 GO:GO:0005622
            EMBL:AB007651 eggNOG:NOG137357 HOGENOM:HOG000238683 EMBL:BT026360
            EMBL:AK229223 IPI:IPI00522853 RefSeq:NP_197632.1 UniGene:At.7364
            ProteinModelPortal:Q9FMR1 SMR:Q9FMR1 EnsemblPlants:AT5G22400.1
            GeneID:832301 KEGG:ath:AT5G22400 TAIR:At5g22400 InParanoid:Q9FMR1
            OMA:SMEIGWP PhylomeDB:Q9FMR1 ProtClustDB:CLSN2916843
            Genevestigator:Q9FMR1 Uniprot:Q9FMR1
        Length = 466

 Score = 176 (67.0 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 33/42 (78%), Positives = 35/42 (83%)

Query:    50 NMEIGCPTNVRHITHATFDRFNDFLGLPVEFEVEVPCRVPSA 91
             +MEIG PTNVRH+ H TFDRFN FLGLPVEFE EVP R PSA
Sbjct:   114 SMEIGWPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRAPSA 155


>TAIR|locus:2080762 [details] [associations]
            symbol:AT3G11490 species:3702 "Arabidopsis thaliana"
            [GO:0005622 "intracellular" evidence=IEA] [GO:0007165 "signal
            transduction" evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM]
            [GO:0030675 "Rac GTPase activator activity" evidence=ISS]
            InterPro:IPR000095 InterPro:IPR000198 InterPro:IPR008936
            Pfam:PF00620 Pfam:PF00786 PROSITE:PS50108 PROSITE:PS50238
            SMART:SM00285 SMART:SM00324 EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0007165 Gene3D:1.10.555.10 SUPFAM:SSF48350 GO:GO:0005622
            EMBL:AC008153 eggNOG:NOG137357 HOGENOM:HOG000238683 IPI:IPI00546032
            RefSeq:NP_187756.1 UniGene:At.53271 ProteinModelPortal:Q9CAX8
            SMR:Q9CAX8 EnsemblPlants:AT3G11490.1 GeneID:820322
            KEGG:ath:AT3G11490 TAIR:At3g11490 InParanoid:Q9CAX8 OMA:DKEESAD
            PhylomeDB:Q9CAX8 ProtClustDB:CLSN2914765 Genevestigator:Q9CAX8
            Uniprot:Q9CAX8
        Length = 435

 Score = 167 (63.8 bits), Expect = 9.3e-12, P = 9.3e-12
 Identities = 31/42 (73%), Positives = 35/42 (83%)

Query:    50 NMEIGCPTNVRHITHATFDRFNDFLGLPVEFEVEVPCRVPSA 91
             +MEIG PT+VRH+ H TFDRF+ FLGLPVEFE EVP R PSA
Sbjct:    90 SMEIGVPTDVRHVAHVTFDRFHGFLGLPVEFEPEVPRRAPSA 131


>TAIR|locus:2062770 [details] [associations]
            symbol:ROPGAP3 "ROP guanosine triphosphatase
            (GTPase)-activating protein 3" species:3702 "Arabidopsis thaliana"
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0030675 "Rac GTPase
            activator activity" evidence=ISS] [GO:0009926 "auxin polar
            transport" evidence=RCA] [GO:0010218 "response to far red light"
            evidence=RCA] [GO:0048765 "root hair cell differentiation"
            evidence=RCA] [GO:0005886 "plasma membrane" evidence=IDA]
            [GO:0009531 "secondary cell wall" evidence=IDA] [GO:0009664
            "plant-type cell wall organization" evidence=IMP]
            InterPro:IPR000095 InterPro:IPR000198 InterPro:IPR008936
            Pfam:PF00620 Pfam:PF00786 PROSITE:PS50238 SMART:SM00285
            SMART:SM00324 GO:GO:0005886 GO:GO:0007165 EMBL:CP002685
            GenomeReviews:CT485783_GR Gene3D:1.10.555.10 SUPFAM:SSF48350
            GO:GO:0005622 GO:GO:0009531 GO:GO:0009664 eggNOG:NOG137357
            EMBL:BT005369 EMBL:AK117311 IPI:IPI00523238 RefSeq:NP_850458.1
            UniGene:At.36471 ProteinModelPortal:Q8GYY5 SMR:Q8GYY5
            EnsemblPlants:AT2G46710.1 GeneID:819283 KEGG:ath:AT2G46710
            TAIR:At2g46710 HOGENOM:HOG000238683 InParanoid:Q8GYY5 OMA:AKSMQCS
            PhylomeDB:Q8GYY5 ProtClustDB:CLSN2680294 Genevestigator:Q8GYY5
            Uniprot:Q8GYY5
        Length = 455

 Score = 156 (60.0 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 30/50 (60%), Positives = 38/50 (76%)

Query:    42 EDVISAVHNMEIGCPTNVRHITHATFDRFNDFLGLPVEFEVEVPCRVPSA 91
             +DV+++   M+IG PT V+H++H TFDRFN FLGLP E E EVP R PSA
Sbjct:    97 DDVVAS---MDIGWPTEVKHVSHVTFDRFNGFLGLPSELEPEVPPRAPSA 143


>TAIR|locus:2199948 [details] [associations]
            symbol:AT1G08340 species:3702 "Arabidopsis thaliana"
            [GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=ISM] [GO:0007165 "signal transduction" evidence=IEA]
            [GO:0030675 "Rac GTPase activator activity" evidence=ISS]
            [GO:0010089 "xylem development" evidence=RCA] [GO:0010413
            "glucuronoxylan metabolic process" evidence=RCA] [GO:0044036 "cell
            wall macromolecule metabolic process" evidence=RCA] [GO:0045492
            "xylan biosynthetic process" evidence=RCA] InterPro:IPR000095
            InterPro:IPR000198 InterPro:IPR008936 Pfam:PF00620 Pfam:PF00786
            PROSITE:PS50108 PROSITE:PS50238 SMART:SM00285 SMART:SM00324
            EMBL:CP002684 GO:GO:0007165 Gene3D:1.10.555.10 SUPFAM:SSF48350
            GO:GO:0005622 eggNOG:KOG4270 UniGene:At.16366 UniGene:At.66925
            EMBL:BT012608 EMBL:BT014961 EMBL:AK228173 IPI:IPI00546944
            RefSeq:NP_172310.1 ProteinModelPortal:Q6NKT5 SMR:Q6NKT5
            PaxDb:Q6NKT5 PRIDE:Q6NKT5 EnsemblPlants:AT1G08340.1 GeneID:837354
            KEGG:ath:AT1G08340 TAIR:At1g08340 InParanoid:Q6NKT5 OMA:CESDEDF
            PhylomeDB:Q6NKT5 ProtClustDB:CLSN2912753 Genevestigator:Q6NKT5
            Uniprot:Q6NKT5
        Length = 331

 Score = 153 (58.9 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 27/41 (65%), Positives = 33/41 (80%)

Query:    51 MEIGCPTNVRHITHATFDRFNDFLGLPVEFEVEVPCRVPSA 91
             M+IG PTN+RH+ H TFDRF+ FLGLP EFE +VP + PSA
Sbjct:     1 MDIGGPTNIRHVAHVTFDRFDGFLGLPSEFEPDVPRKAPSA 41


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.135   0.429    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       92        80   0.00091  102 3  11 22  0.49    28
                                                     29  0.41    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  565 (60 KB)
  Total size of DFA:  111 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.29u 0.14s 10.43t   Elapsed:  00:00:00
  Total cpu time:  10.29u 0.15s 10.44t   Elapsed:  00:00:00
  Start:  Mon May 20 17:11:05 2013   End:  Mon May 20 17:11:05 2013
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the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data
