Query 041607
Match_columns 92
No_of_seqs 93 out of 95
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 15:04:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041607.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041607hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qme_I CRIB domain of the seri 99.5 3.8E-15 1.3E-19 85.4 2.0 33 52-84 1-34 (36)
2 2odb_B Serine/threonine-protei 99.5 6E-15 2.1E-19 84.0 1.6 32 52-83 1-33 (35)
3 2ov2_I Serine/threonine-protei 99.5 3.1E-14 1.1E-18 81.0 2.9 33 52-84 1-34 (35)
4 1f3m_A Serine/threonine-protei 99.4 5.4E-14 1.8E-18 92.2 0.8 36 49-84 2-38 (80)
5 1cee_B Wiskott-aldrich syndrom 99.4 8.3E-14 2.8E-18 86.6 1.5 36 49-84 5-42 (59)
6 2lnh_A N-WAsp, neural wiskott- 98.8 7E-10 2.4E-14 70.7 0.4 27 57-83 2-30 (65)
7 4fie_A Serine/threonine-protei 98.6 4.4E-09 1.5E-13 83.0 0.0 36 49-84 4-40 (423)
8 1ej5_A WAsp, wiskott-aldrich s 98.5 1E-08 3.5E-13 70.5 -0.0 27 57-83 1-29 (107)
9 3u85_B Histone-lysine N-methyl 42.7 10 0.00034 19.8 1.1 11 10-20 10-20 (21)
10 2lqh_B Forkhead box O3, FOXO3A 22.4 27 0.00094 21.3 0.0 12 8-19 23-34 (52)
No 1
>2qme_I CRIB domain of the serine/threonine-protein kinas; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3; HET: GCP; 1.75A {Homo sapiens}
Probab=99.51 E-value=3.8e-15 Score=85.38 Aligned_cols=33 Identities=30% Similarity=0.637 Sum_probs=22.1
Q ss_pred eecCCcccceeeeeeeeCCCC-ccCCCccccccC
Q 041607 52 EIGCPTNVRHITHATFDRFND-FLGLPVEFEVEV 84 (92)
Q Consensus 52 eIG~PTDVrHVaHVgfD~~nG-F~GLP~Ele~ev 84 (92)
+||.||||+||+|||||+.+| |.|||++|+.-+
T Consensus 1 ~Is~Ptnf~H~~Hvg~d~~tG~~~glp~~W~~ll 34 (36)
T 2qme_I 1 EISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLL 34 (36)
T ss_dssp CBCCCEEEEEEEEECCBTTTTBCC----------
T ss_pred CCcCCCCCCCeeEcccCCCCCcccCCCHHHHHHH
Confidence 699999999999999999888 999999998654
No 2
>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structu genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens}
Probab=99.49 E-value=6e-15 Score=83.95 Aligned_cols=32 Identities=38% Similarity=0.719 Sum_probs=29.9
Q ss_pred eecCCcccceeeeeeeeCCCC-ccCCCcccccc
Q 041607 52 EIGCPTNVRHITHATFDRFND-FLGLPVEFEVE 83 (92)
Q Consensus 52 eIG~PTDVrHVaHVgfD~~nG-F~GLP~Ele~e 83 (92)
+||.||||+|++||+||+.+| |.|||++|+..
T Consensus 1 ~Is~Ptnf~H~~Hvg~d~~tG~f~Glp~eW~~l 33 (35)
T 2odb_B 1 EISAPQNFQHRVHTSFDPKEGKFVGLPPQWQNI 33 (35)
T ss_dssp CBCCCEEEEEEEEEEEETTTTEEESCCHHHHHH
T ss_pred CCcCCCCCcCeeeeeECCCCCcccCCCHHHHHH
Confidence 699999999999999999988 99999999864
No 3
>2ov2_I Serine/threonine-protein kinase PAK 4; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3, signalling protein; HET: GCP; 2.10A {Homo sapiens}
Probab=99.45 E-value=3.1e-14 Score=80.98 Aligned_cols=33 Identities=36% Similarity=0.748 Sum_probs=30.2
Q ss_pred eecCCcccceeeeeeeeCCCC-ccCCCccccccC
Q 041607 52 EIGCPTNVRHITHATFDRFND-FLGLPVEFEVEV 84 (92)
Q Consensus 52 eIG~PTDVrHVaHVgfD~~nG-F~GLP~Ele~ev 84 (92)
+||.||||+|+.||+||+..| |.|||++|+..+
T Consensus 1 ~IS~Ptnf~H~~Hvg~d~~tg~~~Glp~eW~~ll 34 (35)
T 2ov2_I 1 EISAPSNFEHRVHTGFDQHEQKFTGLPRQWQSLI 34 (35)
T ss_dssp CBCCCEEEEEEEEEEEETTTTEEESCCGGGTTTC
T ss_pred CCcCCCCCcCeeeeeeCCCCCcccCCCHHHHHHh
Confidence 699999999999999999776 999999998754
No 4
>1f3m_A Serine/threonine-protein kinase PAK-alpha; kinase domain, autoinhibitory fragment, homodimer, transferase; 2.30A {Homo sapiens} SCOP: j.66.1.1 PDB: 1e0a_B* 1ees_B
Probab=99.38 E-value=5.4e-14 Score=92.24 Aligned_cols=36 Identities=28% Similarity=0.568 Sum_probs=27.3
Q ss_pred ccceecCCcccceeeeeeeeCCCC-ccCCCccccccC
Q 041607 49 HNMEIGCPTNVRHITHATFDRFND-FLGLPVEFEVEV 84 (92)
Q Consensus 49 ~~MeIG~PTDVrHVaHVgfD~~nG-F~GLP~Ele~ev 84 (92)
.+++||.||||+||+|||||+..| |.|||++|+..+
T Consensus 2 ~~~~Is~Ptnf~H~~HVg~D~~tG~~~GlP~eW~~ll 38 (80)
T 1f3m_A 2 ERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLL 38 (80)
T ss_dssp -------CCSSEEEEEEEEETTTTEEESCCHHHHHHH
T ss_pred CCCccCCCCCCCCeeecccCCCCCccCCCCHHHHHHH
Confidence 368999999999999999999888 999999998765
No 5
>1cee_B Wiskott-aldrich syndrome protein WAsp; CDC42 actin regulator GTPase and the GTPase binding domain of ITS effector WAsp; HET: GCP; NMR {Homo sapiens}
Probab=99.38 E-value=8.3e-14 Score=86.57 Aligned_cols=36 Identities=25% Similarity=0.525 Sum_probs=33.1
Q ss_pred ccceecCCcccceeeeeeeeCCCCcc--CCCccccccC
Q 041607 49 HNMEIGCPTNVRHITHATFDRFNDFL--GLPVEFEVEV 84 (92)
Q Consensus 49 ~~MeIG~PTDVrHVaHVgfD~~nGF~--GLP~Ele~ev 84 (92)
.+|+||.||||+||+|||||+..||. |||++|+..+
T Consensus 5 ~k~~Is~Ptnf~Hv~HvG~d~~~gf~~~g~pp~W~~ll 42 (59)
T 1cee_B 5 SKADIGAPSGFKHVSHVGWDPQNGFDVNNLDPDLRSLF 42 (59)
T ss_dssp CTTTSCCCCCCEEEEEECCCTTTCCCCSSCCHHHHHHH
T ss_pred CCCcccCCCCCCCcceeccCCCCCcccCCCCHHHHHHH
Confidence 46899999999999999999999998 9999998754
No 6
>2lnh_A N-WAsp, neural wiskott-aldrich syndrome protein; protein complex, signaling protein-protein binding complex; NMR {Homo sapiens}
Probab=98.79 E-value=7e-10 Score=70.71 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=24.3
Q ss_pred cccceeeeeeeeCCCC--ccCCCcccccc
Q 041607 57 TNVRHITHATFDRFND--FLGLPVEFEVE 83 (92)
Q Consensus 57 TDVrHVaHVgfD~~nG--F~GLP~Ele~e 83 (92)
|||+||+|||||+..| |.|||+||+.-
T Consensus 2 tnF~Hv~HVG~D~~tGf~~~glp~eW~~l 30 (65)
T 2lnh_A 2 SNFQHIGHVGWDPNTGFDLNNLDPELKNL 30 (65)
T ss_dssp CCCSSCCSCCEETTTEECGGGCCTTHHHH
T ss_pred CCCEeeeeeeeCCCCCcCCcCCCHHHHHH
Confidence 7999999999999997 58999999754
No 7
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=98.61 E-value=4.4e-09 Score=82.98 Aligned_cols=36 Identities=33% Similarity=0.704 Sum_probs=0.0
Q ss_pred ccceecCCcccceeeeeeeeCC-CCccCCCccccccC
Q 041607 49 HNMEIGCPTNVRHITHATFDRF-NDFLGLPVEFEVEV 84 (92)
Q Consensus 49 ~~MeIG~PTDVrHVaHVgfD~~-nGF~GLP~Ele~ev 84 (92)
...+||.||||+|+.|||||+. .+|+|||.+|+..+
T Consensus 4 ~~~~is~p~n~~h~~hvg~d~~tg~f~glP~~W~~ll 40 (423)
T 4fie_A 4 KRVEISAPSNFEHRVHTGFDQHEQKFTGLPRQWQSLI 40 (423)
T ss_dssp -------------------------------------
T ss_pred CCCcccCCCCCCceeecCccCCCCCcccCCHHHHHHH
Confidence 3468999999999999999995 45999999997554
No 8
>1ej5_A WAsp, wiskott-aldrich syndrome protein; alpha helix, beta-hairpin turn, blood clotting; NMR {Homo sapiens} SCOP: a.68.1.1 PDB: 1t84_A* 2k42_A
Probab=98.53 E-value=1e-08 Score=70.53 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=25.1
Q ss_pred cccceeeeeeeeCCCCcc--CCCcccccc
Q 041607 57 TNVRHITHATFDRFNDFL--GLPVEFEVE 83 (92)
Q Consensus 57 TDVrHVaHVgfD~~nGF~--GLP~Ele~e 83 (92)
|||+||+|||||+.+||. |+|++|..-
T Consensus 1 tnF~Hv~HVG~D~~tGF~~~glppeWk~L 29 (107)
T 1ej5_A 1 SGFKHVSHVGWDPQNGFDVNNLDPDLRSL 29 (107)
T ss_dssp CCCCCCCCCCCBTTTBCCTTTCCHHHHHH
T ss_pred CCCCcceecccCCCCCcCCCCCCHHHHHH
Confidence 799999999999999999 999999764
No 9
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=42.70 E-value=10 Score=19.80 Aligned_cols=11 Identities=45% Similarity=0.839 Sum_probs=7.0
Q ss_pred CCccCCCCCCC
Q 041607 10 GGGCAGGDGGM 20 (92)
Q Consensus 10 gggcgg~~g~~ 20 (92)
||.|++|.|++
T Consensus 10 g~s~~sg~g~r 20 (21)
T 3u85_B 10 GTTGGGGGGGR 20 (26)
T ss_pred CcccCCCcccc
Confidence 56677765554
No 10
>2lqh_B Forkhead box O3, FOXO3A; promiscuous binding, intrinsic disorder, transcription; NMR {Homo sapiens} PDB: 2lqi_B
Probab=22.40 E-value=27 Score=21.35 Aligned_cols=12 Identities=58% Similarity=1.368 Sum_probs=6.7
Q ss_pred ecCCccCCCCCC
Q 041607 8 TKGGGCAGGDGG 19 (92)
Q Consensus 8 ~kgggcgg~~g~ 19 (92)
|.|||-|||.|+
T Consensus 23 sdgggsgggsgg 34 (52)
T 2lqh_B 23 SDGGGSGGGSGG 34 (52)
Confidence 356766665443
Done!