Query 041608
Match_columns 448
No_of_seqs 330 out of 2456
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 15:06:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041608.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041608hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 4.2E-54 1.4E-58 468.9 27.5 399 1-441 324-816 (823)
2 1yae_A Glutamate receptor, ion 99.9 3.9E-24 1.3E-28 206.2 14.4 231 91-392 11-293 (312)
3 1pb7_A N-methyl-D-aspartate re 99.9 3.9E-23 1.3E-27 197.4 13.2 213 92-391 40-291 (292)
4 2rc8_A Glutamate [NMDA] recept 99.9 6.4E-23 2.2E-27 196.0 12.5 189 119-392 67-294 (294)
5 4h5g_A Amino acid ABC superfam 99.9 1.2E-22 4.2E-27 188.4 13.0 210 91-385 10-238 (243)
6 3g3k_A Glutamate receptor, ion 99.9 1.9E-22 6.5E-27 188.5 13.4 216 91-392 2-259 (259)
7 2a5s_A N-methyl-D-aspartate re 99.9 1.2E-21 4E-26 186.3 15.1 194 118-391 55-283 (284)
8 4gvo_A LMO2349 protein; struct 99.9 4.8E-22 1.7E-26 184.3 11.8 210 91-386 7-237 (243)
9 2v3u_A Glutamate receptor delt 99.9 8E-21 2.7E-25 177.7 15.4 216 91-391 1-264 (265)
10 3kzg_A Arginine 3RD transport 99.8 1E-20 3.4E-25 174.2 15.3 206 93-386 3-232 (237)
11 3k4u_A Binding component of AB 99.8 1.3E-20 4.4E-25 174.4 15.8 213 91-391 3-234 (245)
12 3i6v_A Periplasmic His/Glu/Gln 99.8 1.3E-20 4.3E-25 173.3 15.4 201 91-386 3-219 (232)
13 1mqi_A Glutamate receptor 2; G 99.8 1.7E-20 5.9E-25 175.5 15.1 213 91-391 2-262 (263)
14 4f3p_A Glutamine-binding perip 99.8 1.6E-20 5.3E-25 174.4 14.2 207 91-386 22-244 (249)
15 3hv1_A Polar amino acid ABC up 99.8 4.3E-20 1.5E-24 173.3 17.1 208 91-386 19-250 (268)
16 3del_B Arginine binding protei 99.8 4E-20 1.4E-24 170.5 16.2 204 91-386 9-234 (242)
17 3h7m_A Sensor protein; histidi 99.8 8.5E-20 2.9E-24 167.0 14.8 207 91-385 9-231 (234)
18 3tql_A Arginine-binding protei 99.8 1.8E-19 6.3E-24 163.8 16.6 204 93-383 2-227 (227)
19 3kbr_A Cyclohexadienyl dehydra 99.8 7.5E-20 2.6E-24 168.3 12.1 206 91-385 13-238 (239)
20 2y7i_A STM4351; arginine-bindi 99.8 5.5E-19 1.9E-23 161.1 15.9 203 91-384 4-228 (229)
21 3mpk_A Virulence sensor protei 99.8 6.1E-20 2.1E-24 172.5 9.1 214 84-385 22-253 (267)
22 1wdn_A GLNBP, glutamine bindin 99.8 8.7E-19 3E-23 159.2 14.8 205 93-386 3-224 (226)
23 4eq9_A ABC transporter substra 99.8 5.7E-19 1.9E-23 162.9 13.3 207 91-386 6-237 (246)
24 1ii5_A SLR1257 protein; membra 99.8 6.4E-19 2.2E-23 161.0 13.4 207 92-386 3-228 (233)
25 1lst_A Lysine, arginine, ornit 99.8 6.1E-19 2.1E-23 162.1 12.5 208 92-386 3-234 (239)
26 2iee_A ORF2, probable ABC tran 99.8 4.5E-19 1.5E-23 167.0 11.8 207 91-384 19-246 (271)
27 4dz1_A DALS D-alanine transpor 99.8 1.2E-18 4.1E-23 162.8 11.9 209 91-386 27-255 (259)
28 2q88_A EHUB, putative ABC tran 99.8 3.1E-18 1.1E-22 159.3 12.6 209 91-384 11-240 (257)
29 4i62_A Amino acid ABC transpor 99.8 7.5E-18 2.6E-22 157.5 14.0 208 91-386 37-266 (269)
30 2pyy_A Ionotropic glutamate re 99.7 7.2E-18 2.5E-22 153.3 12.0 203 93-386 3-224 (228)
31 3qax_A Probable ABC transporte 99.7 2.9E-17 1E-21 153.3 16.5 204 91-386 29-255 (268)
32 2yln_A Putative ABC transporte 99.7 1.6E-17 5.5E-22 157.5 14.5 205 91-386 55-279 (283)
33 2pvu_A ARTJ; basic amino acid 99.7 3E-17 1E-21 154.4 15.3 208 91-386 40-264 (272)
34 2yjp_A Putative ABC transporte 99.7 2.4E-17 8.3E-22 156.8 14.2 205 91-385 53-277 (291)
35 1xt8_A Putative amino-acid tra 99.7 2E-17 7E-22 157.2 13.3 206 91-386 42-267 (292)
36 2vha_A Periplasmic binding tra 99.7 3.2E-17 1.1E-21 155.4 14.4 208 91-386 15-250 (287)
37 2v25_A Major cell-binding fact 99.5 8.9E-15 3E-19 135.5 8.9 200 91-383 36-258 (259)
38 4gpa_A Glutamate receptor 4; P 98.5 3.2E-08 1.1E-12 97.1 4.0 52 1-53 328-380 (389)
39 3om0_A Glutamate receptor, ion 97.9 4.2E-06 1.4E-10 82.3 4.0 52 1-53 331-383 (393)
40 3n5l_A Binding protein compone 97.8 2.4E-05 8.1E-10 74.5 6.4 84 294-383 154-242 (310)
41 3h6g_A Glutamate receptor, ion 97.8 1E-05 3.6E-10 79.5 3.9 52 1-53 332-385 (395)
42 2ozz_A Hypothetical protein YH 97.8 2.9E-05 1E-09 69.9 6.5 92 267-367 113-211 (231)
43 3p7i_A PHND, subunit of alkylp 97.6 6.9E-05 2.4E-09 71.6 6.6 85 293-383 162-251 (321)
44 3o21_A Glutamate receptor 3; p 97.4 8.4E-05 2.9E-09 73.0 3.8 53 1-53 330-382 (389)
45 4f11_A Gamma-aminobutyric acid 97.3 0.00025 8.4E-09 70.5 5.6 43 1-45 362-404 (433)
46 1dp4_A Atrial natriuretic pept 96.8 0.0017 5.8E-08 64.3 7.3 45 1-47 352-399 (435)
47 1jdp_A NPR-C, atrial natriuret 96.1 0.004 1.4E-07 61.8 4.8 45 1-47 349-397 (441)
48 2x26_A Periplasmic aliphatic s 95.1 0.15 5E-06 47.5 11.2 113 267-385 106-233 (308)
49 3uif_A Sulfonate ABC transport 94.6 0.26 8.8E-06 46.9 11.6 97 267-370 120-229 (348)
50 2ih3_C Voltage-gated potassium 94.0 0.1 3.6E-06 41.7 6.2 57 203-263 41-99 (122)
51 2e4u_A Metabotropic glutamate 93.9 0.062 2.1E-06 55.0 5.9 46 1-50 411-468 (555)
52 2k1e_A Water soluble analogue 93.5 0.042 1.4E-06 42.6 3.0 59 201-263 18-78 (103)
53 3eff_K Voltage-gated potassium 93.2 0.17 6E-06 41.3 6.4 57 203-263 20-78 (139)
54 2a9h_A Voltage-gated potassium 92.4 0.24 8.2E-06 41.4 6.2 58 202-263 63-122 (155)
55 3ix1_A N-formyl-4-amino-5-amin 91.8 0.32 1.1E-05 45.1 7.0 47 267-317 107-157 (302)
56 3ksx_A Nitrate transport prote 91.3 1.2 4E-05 41.6 10.6 83 267-355 132-219 (324)
57 3un6_A Hypothetical protein sa 91.1 0.95 3.2E-05 42.7 9.8 112 267-385 155-284 (341)
58 3ks9_A Mglur1, metabotropic gl 90.8 0.11 3.7E-06 52.4 2.8 41 1-43 427-474 (496)
59 3sm9_A Mglur3, metabotropic gl 90.5 0.19 6.6E-06 50.3 4.3 47 1-51 410-468 (479)
60 3i45_A Twin-arginine transloca 90.2 0.27 9.2E-06 47.3 5.0 52 1-53 315-368 (387)
61 4h33_A LMO2059 protein; bilaye 87.6 0.8 2.7E-05 37.2 5.3 37 227-263 43-81 (137)
62 3ldc_A Calcium-gated potassium 86.2 1.5 5.1E-05 32.0 5.7 37 227-263 28-66 (82)
63 2f5x_A BUGD; periplasmic bindi 84.7 3.3 0.00011 38.7 8.7 88 291-382 168-275 (312)
64 3qsl_A Putative exported prote 84.3 4.3 0.00015 37.7 9.6 60 267-330 139-205 (346)
65 3vou_A ION transport 2 domain 83.4 2 7E-05 35.2 5.9 37 227-263 52-90 (148)
66 1orq_C Potassium channel; volt 82.4 2.3 7.8E-05 37.5 6.3 57 203-263 145-203 (223)
67 2q67_A Potassium channel prote 81.8 2.4 8.1E-05 33.2 5.4 37 227-263 49-87 (114)
68 2dvz_A BUGE, putative exported 81.3 5 0.00017 37.5 8.5 88 291-382 172-279 (314)
69 3lkb_A Probable branched-chain 80.8 0.16 5.4E-06 49.1 -2.2 44 8-52 338-382 (392)
70 3ouf_A Potassium channel prote 80.6 2.9 0.0001 31.5 5.5 37 227-263 32-70 (97)
71 2qpq_A Protein BUG27; alpha/be 78.5 3.5 0.00012 38.3 6.4 86 291-382 159-266 (301)
72 3eaf_A ABC transporter, substr 74.7 1.4 4.8E-05 42.3 2.6 45 3-48 326-375 (391)
73 1xl4_A Inward rectifier potass 73.7 5.6 0.00019 36.9 6.3 40 224-263 79-120 (301)
74 3pjs_K KCSA, voltage-gated pot 73.1 0.25 8.4E-06 41.8 -2.9 39 225-263 65-105 (166)
75 1p7b_A Integral membrane chann 72.9 4.6 0.00016 38.1 5.5 39 225-263 94-134 (333)
76 3beh_A MLL3241 protein; transm 68.5 3.7 0.00013 38.9 4.0 58 202-263 140-199 (355)
77 2qks_A KIR3.1-prokaryotic KIR 65.8 12 0.00039 35.1 6.6 37 227-263 78-116 (321)
78 2nr1_A NR1 M2, M2; receptor, s 64.6 3.3 0.00011 22.8 1.5 19 225-243 6-24 (27)
79 2l2t_A Receptor tyrosine-prote 59.6 23 0.0008 22.3 5.0 18 418-435 19-36 (44)
80 2klu_A T-cell surface glycopro 59.3 21 0.00073 24.5 5.1 12 416-427 13-24 (70)
81 2jwa_A Receptor tyrosine-prote 59.3 19 0.00065 22.7 4.5 23 417-439 19-41 (44)
82 4gx0_A TRKA domain protein; me 58.7 27 0.00092 35.2 8.5 37 227-263 51-89 (565)
83 2r9r_B Paddle chimera voltage 53.4 19 0.00067 36.0 6.2 38 226-263 374-413 (514)
84 3h5l_A Putative branched-chain 50.3 5.9 0.0002 38.2 1.8 20 2-21 342-362 (419)
85 2de3_A Dibenzothiophene desulf 49.1 22 0.00075 33.7 5.6 78 300-384 210-299 (365)
86 3mq4_A Mglur7, metabotropic gl 47.7 6.3 0.00021 39.1 1.5 31 1-33 420-452 (481)
87 3n0x_A Possible substrate bind 46.7 11 0.00037 35.7 3.0 35 1-36 314-349 (374)
88 1pea_A Amidase operon; gene re 46.6 13 0.00043 35.3 3.5 39 1-40 315-355 (385)
89 1zbm_A Hypothetical protein AF 44.1 26 0.00089 31.3 5.1 96 267-372 104-210 (280)
90 1lnq_A MTHK channels, potassiu 41.6 5.2 0.00018 37.5 -0.2 37 227-263 45-83 (336)
91 1us5_A Putative GLUR0 ligand b 34.8 1.6E+02 0.0053 26.4 9.0 50 267-320 132-188 (314)
92 2g29_A Nitrate transport prote 32.9 1.1E+02 0.0039 29.1 8.0 98 267-371 156-272 (417)
93 2knc_A Integrin alpha-IIB; tra 31.8 1E+02 0.0034 20.3 4.9 11 421-431 26-36 (54)
94 3i09_A Periplasmic branched-ch 29.9 26 0.00089 32.8 2.7 33 1-35 309-342 (375)
95 4ddd_A Immunogenic protein; ss 29.4 73 0.0025 29.4 5.7 50 267-320 147-203 (327)
96 2k1k_A Ephrin type-A receptor 29.1 56 0.0019 19.8 3.1 12 421-432 24-35 (38)
97 3um7_A Potassium channel subfa 26.4 33 0.0011 31.7 2.6 37 227-263 115-153 (309)
98 3ukm_A Potassium channel subfa 25.7 1.1E+02 0.0037 27.8 5.9 37 227-263 201-246 (280)
99 3um7_A Potassium channel subfa 24.7 1.1E+02 0.0038 28.2 5.8 37 227-263 224-268 (309)
100 3ukm_A Potassium channel subfa 21.7 48 0.0016 30.2 2.6 37 227-263 93-131 (280)
101 2l8s_A Integrin alpha-1; trans 20.9 1.7E+02 0.0057 19.2 4.3 12 420-431 22-33 (54)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=4.2e-54 Score=468.94 Aligned_cols=399 Identities=21% Similarity=0.329 Sum_probs=311.5
Q ss_pred CccceeeeeeeeEEe-eCCcccCCCCEEEEEecCCceEEEEEEcCCCCCccccchhhhhcccCCCCCCCCccCCcceecC
Q 041608 1 IINSRFTSLSGNFQL-VDGKLTSSGAFEIVNVIGKTLKRVGFWSPITRISKEMNSLVLFNKMNISSPSPNDDELEAVIWP 79 (448)
Q Consensus 1 ~~~~~~~G~tg~~~f-~~g~~~~~~~~~i~~~~~~~~~~~g~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~wp 79 (448)
|++++|+|+||++.| ++|++.++ .|+|+|++++|+++||.|++..|+....... .++
T Consensus 324 l~~~~f~G~tG~i~fd~~G~~~~~-~~~I~~~~~~g~~~vg~w~~~~g~~~~~~~~---------------~~~------ 381 (823)
T 3kg2_A 324 LKQVQVEGLSGNIKFDQNGKRINY-TINIMELKTNGPRKIGYWSEVDKMVLTEDDT---------------SGL------ 381 (823)
T ss_dssp HTTCCCEETTEECCBCSSSCBCSC-EEEEEEECSSCEEEEEEEETTTEEEECCCCC---------------SSC------
T ss_pred HHhcccCCcccCeEECCCCccccc-EEEEEEEcCCCCeeEEEEcCCCCceeccCcc---------------ccc------
Confidence 467899999999999 89999999 9999999999999999999998887542100 001
Q ss_pred CCCCCCCCCCCCCCeEEEEeccCCcccceeccc--CC-CCCeeEEEehHHHHHHHHHHCCCcccEEEEecCC------CC
Q 041608 80 GGSAAIPEGGGKINKLRIGVPVNGFKELVNAAR--DP-QGTLIVEGICIDVFKSAIDSLTFEVPYEFIPFED------AS 150 (448)
Q Consensus 80 ~~~~~~p~~~~~~~~l~V~~~~~p~~p~~~~~~--d~-~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~------~~ 150 (448)
++++|+|++.. ++||++... ++ ++++++.|||+||++++|+++||+++++.++++. .+
T Consensus 382 -----------~~~~l~v~~~~--~~P~~~~~~~~~~~~~~~~~~G~~~dl~~~~a~~l~~~~~~~~~~~~~~g~~~~~~ 448 (823)
T 3kg2_A 382 -----------EQKTVVVTTIL--ESPYVMMKANHAALAGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADT 448 (823)
T ss_dssp -----------CCCCEEEEECC--CTTTSEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECSSCCCCCBCTTT
T ss_pred -----------CCCEEEEEEec--CCCcEEEecCccccCCCCceEEEHHHHHHHHHHHcCCcEEEEEccCCcccccCCCC
Confidence 67999999976 334444321 11 5678899999999999999999998887776331 23
Q ss_pred CCcCC----------------------ccccccccccceecceEEEEEc--cCCCCceEeeccCChhHHHHHHHHHHHHH
Q 041608 151 GRMAG----------------------SSLYVDFTLPYTEMGIGMIVPI--DQSNNIWIFLKPLEPNLWLTTAALFLLTS 206 (448)
Q Consensus 151 g~~~g----------------------R~~~vdFS~p~~~~~~~ilv~~--~~~~~~~~fl~PF~~~vWl~i~~~~~~~~ 206 (448)
|.|++ |++.+|||.||+.+++++++++ +...+++.|++||++++|+++++++++++
T Consensus 449 g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~dfs~py~~~~~~~~v~~~~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~ 528 (823)
T 3kg2_A 449 KIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVS 528 (823)
T ss_dssp CCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEEECSCSEEECEEEEEECCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHH
T ss_pred CchhhHHHhhccccCcEEecceecchhheeeEEeccchhhCCEEEEEECCCcccccchHhhcCCchhHHHHHHHHHHHHH
Confidence 44655 9999999999999999999998 34577899999999999999999999999
Q ss_pred HHhhhhccccCCCCCCCc--------------ccchhhHHHHHHHHhhhcccc-cccccccchhhhhhhhhh----hcc-
Q 041608 207 FVMWIIERPVNDEFQGSR--------------AHQFGMIFWYSFSTLVFSQRE-KLFSNLSKFVVIVWLFVL----ASM- 266 (448)
Q Consensus 207 ~~l~~~~r~~~~~~~~~~--------------~~~~~~~~w~~~~~l~~q~~~-~~~s~s~Ri~~~~W~~~~----sSy- 266 (448)
+++|+++|.++.++..+. ..++.+++|++++++++|+.. .|++.++|+++++|||++ ++|
T Consensus 529 ~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~p~~~~~R~~~~~w~~~~lil~~~Yt 608 (823)
T 3kg2_A 529 VVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYT 608 (823)
T ss_dssp TTGGGTC-----------------------CHHHHHHHHHHHTTTTSCC------CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcChhhccCcccccccccccccccccccHHHHHHHHHHHHHhcCCCcCCcchhhhhHHHHHHHHHHHHHHHHH
Confidence 999999998765543221 225789999999999988855 579999999999999987 444
Q ss_pred ---------------------------cceeeecCCcHHhhhhcCCCCc-c----------cccccCCHHHHHHHhccCc
Q 041608 267 ---------------------------DNIGSQLGSVVPGALSNLNFKD-S----------RLKKYNSTKEYANALSKES 308 (448)
Q Consensus 267 ---------------------------~~v~~~~~s~~~~~l~~~~~~~-~----------~~~~~~~~~~~~~~l~~~~ 308 (448)
..+++..+++..+++++...+. . ....+.+.+++++.++
T Consensus 609 a~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 685 (823)
T 3kg2_A 609 ANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVR--- 685 (823)
T ss_dssp HHHHHHHHHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHHHHHHCCCHHHHHHHHHHHHCSSCCCBSSHHHHHHHHH---
T ss_pred HHHHHHhcccccCCCCCCHHHHhhCCCeeEEEEeCCcHHHHHHhccchHHHHHHHHHHhcCCccccCCHHHHHHHHh---
Confidence 1367777777777776433221 0 1123458888888885
Q ss_pred cCCceEEEEcchhhHHHHHHcC-CCceEEeCCCccCCCCCeeEEEecCCccHHHHHHHHHhHhhcCchhHHHHHhcccCC
Q 041608 309 KNGGISAIIDEMPYIKAFLAKY-SAHYTLTAPKNTNSTNGFGFVFQKGSSLVHDISKAIARLREEGTLTKIENEWFIDRQ 387 (448)
Q Consensus 309 ~~~~~~a~i~~~~~~~y~~~~~-c~~l~~v~~~~~~~~~~~~~a~~k~spl~~~in~~il~l~e~G~l~~l~~kw~~~~~ 387 (448)
..++.+|++.|.+.++|+.+++ | +++.+++. +...+|++++||||||++.||++|++|+|+|++++|.++|+.+.
T Consensus 686 ~~~~~~A~~~~~~~~~y~~~~~~c-~l~~v~~~--~~~~~~~~~~~k~spl~~~~~~~il~l~e~G~~~~~~~~w~~~~- 761 (823)
T 3kg2_A 686 KSKGKYAYLLESTMNEYIEQRKPC-DTMKVGGN--LDSKGYGIATPKGSSLGTPVNLAVLKLSEQGLLDKLKNKWWYDK- 761 (823)
T ss_dssp TTTTSEEEEEEHHHHHHHHTSTTC-CEEEESCC--SSCEEECCEEETTCSSHHHHHHHHHHHHHTTHHHHHHHHHHTTS-
T ss_pred ccCCceEEEechHHHHHHHhcCCC-ceEEcccc--ccccceeEeecCCChHHHHHHHHHHHHHhCCcHHHHHHhhCcCC-
Confidence 2456799999999999998887 9 79999999 99999999999999999999999999999999999999999887
Q ss_pred CccCCCCC-CCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 041608 388 SSFMHKGS-ISDNPSSLSLTNFGGLFLITGISLTLALVIFLLPSIYKKNAFWKED 441 (448)
Q Consensus 388 ~~c~~~~~-~~~~~~~l~l~~~~g~F~il~~g~~lallv~~~E~~~~~~~~~~~~ 441 (448)
..|..... ......+|+++++.|+|+++++|+++|+++|++|++|++++.+++.
T Consensus 762 ~~c~~~~~~~~~~~~~L~l~~l~g~f~il~~g~~la~~vf~~E~~~~~~~~~~~~ 816 (823)
T 3kg2_A 762 GECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEAKRM 816 (823)
T ss_dssp CSCSSTTTSTTTCCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred CCCCCCCccccccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHcchhhhhc
Confidence 88987322 2346679999999999999999999999999999999988877754
No 2
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.91 E-value=3.9e-24 Score=206.16 Aligned_cols=231 Identities=19% Similarity=0.252 Sum_probs=161.0
Q ss_pred CCCeEEEEeccCCcccceeccc-C--CCCCeeEEEehHHHHHHHHHHCCCcccEEEEecCCC------CCCcCC------
Q 041608 91 KINKLRIGVPVNGFKELVNAAR-D--PQGTLIVEGICIDVFKSAIDSLTFEVPYEFIPFEDA------SGRMAG------ 155 (448)
Q Consensus 91 ~~~~l~V~~~~~p~~p~~~~~~-d--~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~------~g~~~g------ 155 (448)
++++|+||+.. ++||.+... + .++++++.||++||+++|++++|++++++.++.... ...|++
T Consensus 11 ~~~~l~V~~~~--~~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~ 88 (312)
T 1yae_A 11 SNRSLIVTTIL--EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELI 88 (312)
T ss_dssp CSCEEEEEECC--BTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHCCEEEEEECSSCCCCCBCTTTCCBCSHHHHHH
T ss_pred cCceEEEEEec--cCCeeEEeccccccCCCceEEEEEHHHHHHHHHHcCCeEEEEecCCCccceeccCCCcchHHHHHHh
Confidence 67899999975 456665421 0 014678999999999999999999877775432100 122222
Q ss_pred ----------------ccccccccccceecceEEEEEcc--CCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhcc---
Q 041608 156 ----------------SSLYVDFTLPYTEMGIGMIVPID--QSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIER--- 214 (448)
Q Consensus 156 ----------------R~~~vdFS~p~~~~~~~ilv~~~--~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r--- 214 (448)
|++.++||.||+..+.+++++++ ...++|.|+.||+..-. .+.+
T Consensus 89 ~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~~~p~---------------tv~~~~~ 153 (312)
T 1yae_A 89 DHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGSLVPR---------------GSERMES 153 (312)
T ss_dssp TTSCSEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC------------------------------------------
T ss_pred CCCcCEEeecceechhhcceEEecceeeecceEEEEeCCccccccceeeecccccCCc---------------ccccccC
Confidence 99999999999999999999983 56789999999982111 0000
Q ss_pred --ccCCCCCCCcccchhhHHHHHHHHhhhcccccccccccchhhhhhhhhhhccc---ceeeecCCcHHhhhhcCCCCc-
Q 041608 215 --PVNDEFQGSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWLFVLASMD---NIGSQLGSVVPGALSNLNFKD- 288 (448)
Q Consensus 215 --~~~~~~~~~~~~~~~~~~w~~~~~l~~q~~~~~~s~s~Ri~~~~W~~~~sSy~---~v~~~~~s~~~~~l~~~~~~~- 288 (448)
.+..++.+ + ++|++.+++...++.+..++.
T Consensus 154 ~i~~~~dL~g--------------------------------------------~~~~~vg~v~~~~~~~~l~~~~~~~~ 189 (312)
T 1yae_A 154 PIDSADDLAK--------------------------------------------QTKIEYGAVEDGATMTFFKKSKISTY 189 (312)
T ss_dssp -CCSHHHHHT--------------------------------------------CSSSEEECBTTSHHHHHHHHCCBHHH
T ss_pred CCCCHHHHhh--------------------------------------------ccCceEEEEeCChHHHHHHhccCchH
Confidence 00111222 3 688877776677775433321
Q ss_pred ----------ccccccCCHHHHHHHhccCccCCceEEEEcchhhHHHHHHcCCCceEEeCCCccCCCCCeeEEEecCCcc
Q 041608 289 ----------SRLKKYNSTKEYANALSKESKNGGISAIIDEMPYIKAFLAKYSAHYTLTAPKNTNSTNGFGFVFQKGSSL 358 (448)
Q Consensus 289 ----------~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~y~~~~~c~~l~~v~~~~~~~~~~~~~a~~k~spl 358 (448)
.++..+.+.++++++| ..|. ||++.+...+.|++++.| ++++++.. +...+++++++|++||
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~l----~~G~-Da~i~~~~~~~~~~~~~~-~l~~~~~~--~~~~~~~~a~~k~~~l 261 (312)
T 1yae_A 190 DKMWAFMSSRRQSVLVKSNEEGIQRV----LTSD-YAFLMESTTIEFVTQRNC-NLTQIGGL--IDSKGYGVGTPMGSPY 261 (312)
T ss_dssp HHHHHHHHHTHHHHCBSSHHHHHHHH----HHSS-EEEEEEHHHHHHHHTTCT-TEEEESSC--SSCEEEEEEEETTCSS
T ss_pred HHHHHHHHhcCCCcccCCHHHHHHHH----HcCC-cEEEeccHHHHHHHhcCC-CEEEeccc--ccccceEEEEeCCCCc
Confidence 2456788999999999 6677 999999999999998888 79999888 8889999999999999
Q ss_pred HHHHHHHHHhHhhcCchhHHHHHhcccCCCccCC
Q 041608 359 VHDISKAIARLREEGTLTKIENEWFIDRQSSFMH 392 (448)
Q Consensus 359 ~~~in~~il~l~e~G~l~~l~~kw~~~~~~~c~~ 392 (448)
++.||++|.+|.++|.+++|.+||+.. ..|..
T Consensus 262 ~~~in~~l~~l~~~G~~~~i~~kw~~~--~~c~~ 293 (312)
T 1yae_A 262 RDKITIAILQLQEEGKLHMMKEKWWRG--NGCPE 293 (312)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHCC--SCC--
T ss_pred HHHHHHHHHHHHHcCCHHHHHhhhcCC--CCCCC
Confidence 999999999999999999999999987 68987
No 3
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.89 E-value=3.9e-23 Score=197.39 Aligned_cols=213 Identities=15% Similarity=0.196 Sum_probs=157.8
Q ss_pred CCeEEEEeccCCcccceecccCCCCCeeEEEehHHHHHHHHHHCCCcccEEEEecCCC----------CCCcCC------
Q 041608 92 INKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDSLTFEVPYEFIPFEDA----------SGRMAG------ 155 (448)
Q Consensus 92 ~~~l~V~~~~~p~~p~~~~~~d~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~----------~g~~~g------ 155 (448)
.++++|++.. .|+||.+. +.++++.|||+||+++|++++|++++++.++++.. .+.|++
T Consensus 40 ~~~l~vg~~~-~~~P~~~~----~~~g~~~G~~vDll~~ia~~lg~~~~~~~~~d~~~g~~~~~~~~~~~~w~~~~~~l~ 114 (292)
T 1pb7_A 40 KKVICTGPND-TSPGSPRH----TVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELL 114 (292)
T ss_dssp CCEEEEEEC---------C----EEEEEEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCEEECTTSSCEEECHHHHHHH
T ss_pred cceeecccCC-CCCCcccc----ccccCcceeHHHHHHHHHHHcCceEEEEEecCCcccccccccccccCcHHHHHHHHH
Confidence 3788998874 44444433 34578999999999999999999888877532100 012222
Q ss_pred ----------------ccccccccccceecceEEEEEccCCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCC
Q 041608 156 ----------------SSLYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDE 219 (448)
Q Consensus 156 ----------------R~~~vdFS~p~~~~~~~ilv~~~~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~ 219 (448)
|++.++||.||+.++++++++++.... +..+
T Consensus 115 ~g~~D~~~~~~~~t~~R~~~~~fs~Py~~~~~~i~~~~~~~i~---------------------------------~~~d 161 (292)
T 1pb7_A 115 SGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTRIT---------------------------------GIND 161 (292)
T ss_dssp HTSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTCCCC---------------------------------STTC
T ss_pred cCCcCEEEeeeEecHHHhcceEechhhHhcCeEEEEECCcCCC---------------------------------CCcC
Confidence 999999999999999999999843211 1122
Q ss_pred CC--CCcccchhhHHHHHHHHhhhcccccccccccchhhhhhhhhhhcccceeeecCCcHHhhhhcC-CC----Cccccc
Q 041608 220 FQ--GSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNL-NF----KDSRLK 292 (448)
Q Consensus 220 ~~--~~~~~~~~~~~w~~~~~l~~q~~~~~~s~s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~~-~~----~~~~~~ 292 (448)
+. +.. +. ..+|+..++..+.++++. .+ +..++.
T Consensus 162 l~~~g~~-------------------~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (292)
T 1pb7_A 162 PRLRNPS-------------------DK---------------------FIYATVKQSSVDIYFRRQVELSTMYRHMEKH 201 (292)
T ss_dssp HHHHSCB-------------------TT---------------------BCEECBTTSHHHHHHHTCGGGHHHHHHHTTT
T ss_pred ccccCcc-------------------cc---------------------eEEEEEcCchHHHHhhhcccHHHHHHHHHhh
Confidence 22 100 00 224777888777776532 11 123456
Q ss_pred ccCCHHHHHHHhccCccCCceEEEEcchhhHHHHHHcCCCceEEeCCCccCCCCCeeEEEecCCccHHHHHHHHHhHhhc
Q 041608 293 KYNSTKEYANALSKESKNGGISAIIDEMPYIKAFLAKYSAHYTLTAPKNTNSTNGFGFVFQKGSSLVHDISKAIARLREE 372 (448)
Q Consensus 293 ~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~y~~~~~c~~l~~v~~~~~~~~~~~~~a~~k~spl~~~in~~il~l~e~ 372 (448)
.+.+.++++++|.+|+ +||++.+...+.|+++++| ++++++.. +...+|+++++|++||++.||++|.+|+++
T Consensus 202 ~~~~~~~~~~~l~~G~----vDa~i~d~~~~~~~~~~~~-~l~~~~~~--~~~~~~~ia~~k~~~l~~~in~al~~l~~~ 274 (292)
T 1pb7_A 202 NYESAAEAIQAVRDNK----LHAFIWDSAVLEFEASQKC-DLVTTGEL--FFRSGFGIGMRKDSPWKQNVSLSILKSHEN 274 (292)
T ss_dssp CBSSHHHHHHHHHTTS----CSEEEEEHHHHHHHHHHCT-TEEECSSC--SEEEEECCEEETTCSSHHHHHHHHHHHHHS
T ss_pred cCCCHHHHHHHHHcCC----ceEEEEcHHHHHHHHhcCC-CEEEcCcc--ccCCceEEEEeCCCHHHHHHHHHHHHHHhC
Confidence 7889999999996665 9999999999999999989 79999888 888999999999999999999999999999
Q ss_pred CchhHHHHHhcccCCCccC
Q 041608 373 GTLTKIENEWFIDRQSSFM 391 (448)
Q Consensus 373 G~l~~l~~kw~~~~~~~c~ 391 (448)
|.+++|.+||+.. .+|.
T Consensus 275 G~~~~l~~kw~~~--~~c~ 291 (292)
T 1pb7_A 275 GFMEDLDKTWVRY--QECD 291 (292)
T ss_dssp SHHHHHHHHHTSS--SCCC
T ss_pred CCHHHHHHhhCCC--CCCC
Confidence 9999999999986 6786
No 4
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.88 E-value=6.4e-23 Score=196.03 Aligned_cols=189 Identities=17% Similarity=0.294 Sum_probs=146.3
Q ss_pred eEEEehHHHHHHHHHHCCCcccEEEEecCC----CCCCcCC----------------------ccccccccccceecceE
Q 041608 119 IVEGICIDVFKSAIDSLTFEVPYEFIPFED----ASGRMAG----------------------SSLYVDFTLPYTEMGIG 172 (448)
Q Consensus 119 ~~~G~~idll~~la~~l~f~~~~~~~~~~~----~~g~~~g----------------------R~~~vdFS~p~~~~~~~ 172 (448)
++.||++||+++|++++|++++++.++++. ..+.|++ |++.++||.||+..+.+
T Consensus 67 ~~~G~~vdll~~ia~~lg~~~~~~~~~~~~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~P~~~~~~~ 146 (294)
T 2rc8_A 67 CCYGYCIDLLEQLAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLG 146 (294)
T ss_dssp EEESHHHHHHHHHHHHHTEEEEEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSEECSCSEEEEEE
T ss_pred CceEEhHHHHHHHHHHcCCcEEEEECCCCcccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHhceEEEccchHhcceE
Confidence 489999999999999999987776543210 0112222 99999999999999999
Q ss_pred EEEEccC-CCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCCCC------CCcccchhhHHHHHHHHhhhcccc
Q 041608 173 MIVPIDQ-SNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQ------GSRAHQFGMIFWYSFSTLVFSQRE 245 (448)
Q Consensus 173 ilv~~~~-~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~~~------~~~~~~~~~~~w~~~~~l~~q~~~ 245 (448)
++++++. ... +..++. |
T Consensus 147 i~~~~~~~~i~---------------------------------~~~dL~~~~~~~g----------------------- 170 (294)
T 2rc8_A 147 ILVRTRGTELS---------------------------------GIHDPKLHHPSQG----------------------- 170 (294)
T ss_dssp EEEETTSCCCC---------------------------------STTCHHHHSCCTT-----------------------
T ss_pred EEEECCCCCcC---------------------------------ChhhhhhcCcccC-----------------------
Confidence 9999843 211 234444 5
Q ss_pred cccccccchhhhhhhhhhhcccceeeecCCcHHhhhhcCCCCc----ccccccCCHHHHHHHhccCccCCceEEEEcchh
Q 041608 246 KLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLNFKD----SRLKKYNSTKEYANALSKESKNGGISAIIDEMP 321 (448)
Q Consensus 246 ~~~s~s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~ 321 (448)
.++|+..|+....++++. ++. .+...+.+.++++++|.++ .|.+||++.+..
T Consensus 171 ---------------------~~vg~~~gs~~~~~l~~~-~~~~~~~i~~~~~~~~~~~~~~l~~~--~GrvDa~i~~~~ 226 (294)
T 2rc8_A 171 ---------------------FRFGTVRESSAEDYVRQS-FPEMHEYMRRYNVPATPDGVQYLKND--PEKLDAFIMDKA 226 (294)
T ss_dssp ---------------------CCEECBTTSHHHHHHHHH-CHHHHHHHGGGCBSSHHHHHHHHHSS--SCCCSEEEEEHH
T ss_pred ---------------------eEEEEEcCChHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHhc--cCceeEEEecHH
Confidence 899999999998888643 221 1223578899999999660 144999999999
Q ss_pred hHHHHHHcC--CCceEEeCCCccCCCCCeeEEEecCCccHHHHHHHHHhHhhcCchhHHHHHhcccCCCccCC
Q 041608 322 YIKAFLAKY--SAHYTLTAPKNTNSTNGFGFVFQKGSSLVHDISKAIARLREEGTLTKIENEWFIDRQSSFMH 392 (448)
Q Consensus 322 ~~~y~~~~~--c~~l~~v~~~~~~~~~~~~~a~~k~spl~~~in~~il~l~e~G~l~~l~~kw~~~~~~~c~~ 392 (448)
.+.|++++. | ++++++.. +...+|+++++|+++|++.||++|.+|+++|.+++|.+||+.. ..|++
T Consensus 227 ~~~~~~~~~~~~-~l~~~~~~--~~~~~~~ia~~k~~~l~~~in~al~~l~~~G~~~~l~~kw~~~--~~c~~ 294 (294)
T 2rc8_A 227 LLDYEVSIDADC-KLLTVGKP--FAIEGYGIGLPPNSPLTSNISELISQYKSHGFMDVLHDKWYKV--VPCGK 294 (294)
T ss_dssp HHHHHHHTCSSS-CEEECSCC--EEEEEECCEECTTCTHHHHHHHHHHHHHHTTHHHHHHHHHCCC-------
T ss_pred HHHHHHhhCCCC-CEEEcCCc--ccccceEEEecCCCHHHHHHHHHHHHHHhCCCHHHHHHhhcCC--CCCCC
Confidence 999999874 7 79999888 8889999999999999999999999999999999999999986 77863
No 5
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.88 E-value=1.2e-22 Score=188.36 Aligned_cols=210 Identities=20% Similarity=0.277 Sum_probs=164.5
Q ss_pred CCCeEEEEeccCCcccceecccCCCCCeeEEEehHHHHHHHHHHCCCcccEEEEecCCC-----CCCcC----C------
Q 041608 91 KINKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDSLTFEVPYEFIPFEDA-----SGRMA----G------ 155 (448)
Q Consensus 91 ~~~~l~V~~~~~p~~p~~~~~~d~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~-----~g~~~----g------ 155 (448)
+.++|+||+. +.|+||.+... .++++++.||++||+++|++++|++++++..+++.. .|..+ +
T Consensus 10 ~~g~L~Vg~~-~~~pP~~~~~~-~d~~g~~~G~~vdl~~~ia~~lg~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~e 87 (243)
T 4h5g_A 10 QKGKLVVATS-PDYAPFEFQSL-VDGKNQVVGADIDMAQAIADELGVKLEILSMSFDNVLTSLQTGKADLAVAGISATDE 87 (243)
T ss_dssp HHTEEEEEEC-CCBTTTBEEEE-ETTEEEEESHHHHHHHHHHHHHTSEEEEEECCGGGHHHHHHTTSCSEECSSCBCCHH
T ss_pred hCCEEEEEEC-CCCCCcEeeec-cCCCCcEEEeHHHHHHHHHHHhCCceEEecccHHHHHHHHHcCCCCcccccccCChh
Confidence 4579999997 56777765211 156788999999999999999999888877776421 22222 1
Q ss_pred ccccccccccceecceEEEEEccCCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcccchhhHHHHH
Q 041608 156 SSLYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQGSRAHQFGMIFWYS 235 (448)
Q Consensus 156 R~~~vdFS~p~~~~~~~ilv~~~~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~w~~ 235 (448)
|++.++||.||+..+.+++++++...... +..++.|
T Consensus 88 R~~~~~fs~py~~~~~~~~v~~~~~~~~~-------------------------------~~~dl~g------------- 123 (243)
T 4h5g_A 88 RKEVFDFSIPYYENKISFLVHKADVEKYK-------------------------------DLTSLES------------- 123 (243)
T ss_dssp HHTTEEECSCSBCCCEEEEEEGGGTTTCC-------------------------------SHHHHHT-------------
T ss_pred HccEEEccCccccCccccccccccccccc-------------------------------ccccCCC-------------
Confidence 99999999999999999999884322210 2234556
Q ss_pred HHHhhhcccccccccccchhhhhhhhhhhcccceeeecCCcHHhhhhcCCCCcccccccCCHHHHHHHhccCccCCceEE
Q 041608 236 FSTLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLNFKDSRLKKYNSTKEYANALSKESKNGGISA 315 (448)
Q Consensus 236 ~~~l~~q~~~~~~s~s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a 315 (448)
+++|+..|+..+.++++. ++..+++.+++..+++++|.+|+ +|+
T Consensus 124 -------------------------------~~i~v~~g~~~~~~l~~~-~~~~~i~~~~~~~~~~~~l~~Gr----vD~ 167 (243)
T 4h5g_A 124 -------------------------------ANIAAQKGTVPESMVKEQ-LPKAQLTSLTNMGEAVNELQAGK----IDA 167 (243)
T ss_dssp -------------------------------SEEEEETTSHHHHHHHHH-CTTSEEEEESCHHHHHHHHHHTS----CSE
T ss_pred -------------------------------CEEEecCCcHHHHHHHHh-cccceeEEeCCHHHHHHHHHcCC----ccE
Confidence 899999999998888643 45667889999999999996666 999
Q ss_pred EEcchhhHHHHHHcCCCceE--EeC-CCccCCCCCeeEEEecCCc-cHHHHHHHHHhHhhcCchhHHHHHhccc
Q 041608 316 IIDEMPYIKAFLAKYSAHYT--LTA-PKNTNSTNGFGFVFQKGSS-LVHDISKAIARLREEGTLTKIENEWFID 385 (448)
Q Consensus 316 ~i~~~~~~~y~~~~~c~~l~--~v~-~~~~~~~~~~~~a~~k~sp-l~~~in~~il~l~e~G~l~~l~~kw~~~ 385 (448)
++.+...+.+++.++. .+. .+. .. ....+++++++|++| |++.||++|.+|+++|.+++|.+||+..
T Consensus 168 ~~~d~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~a~~k~~~~L~~~~n~aL~~l~~dG~~~~i~~Kw~~~ 238 (243)
T 4h5g_A 168 VHMDEPVALSYAAKNA-GLAVATVSLKM--KDGDANAVALRKNSDDLKEVVDKVIQKLKDEGTYQSYLEKAASL 238 (243)
T ss_dssp EEEEHHHHHHHHHHCT-TEEECSCCCCC--CSSCCBCCEEESSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTS
T ss_pred EEecHHHHHHHHHHCC-CCceeeccCCc--ccCceEEEEEeCCCHHHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 9999999988888764 233 222 33 456789999999998 9999999999999999999999999875
No 6
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.88 E-value=1.9e-22 Score=188.51 Aligned_cols=216 Identities=17% Similarity=0.251 Sum_probs=161.3
Q ss_pred CCCeEEEEeccCCcccceecccCC---CCCeeEEEehHHHHHHHHHHCCCcccEEEEecCCC------CCCcCC------
Q 041608 91 KINKLRIGVPVNGFKELVNAARDP---QGTLIVEGICIDVFKSAIDSLTFEVPYEFIPFEDA------SGRMAG------ 155 (448)
Q Consensus 91 ~~~~l~V~~~~~p~~p~~~~~~d~---~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~------~g~~~g------ 155 (448)
++++|+|++.. ++||.+...+. ++++++.||++||+++|++++|++++++.+|.... ...|.+
T Consensus 2 ~~~~l~v~~~~--~~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~~l~ 79 (259)
T 3g3k_A 2 SNRSLIVTTIL--EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELI 79 (259)
T ss_dssp -CCCEEEEECC--BTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHH
T ss_pred CCcEEEEEEec--CCCeEEEeecccccCCCceeeeEHHHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcchHHHHHHh
Confidence 45899999976 45556542211 23688999999999999999999888877652100 112221
Q ss_pred ----------------ccccccccccceecceEEEEEccCCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCC
Q 041608 156 ----------------SSLYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDE 219 (448)
Q Consensus 156 ----------------R~~~vdFS~p~~~~~~~ilv~~~~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~ 219 (448)
|++.++||.||+..+.+++++++.... +..+
T Consensus 80 ~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~i~---------------------------------~~~d 126 (259)
T 3g3k_A 80 DHKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGTPID---------------------------------SADD 126 (259)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSSSCC---------------------------------SHHH
T ss_pred cCcccEEEeeeEecccccceEeeeeeeeeCCEEEEEeCCcccc---------------------------------CHHH
Confidence 999999999999999999999843221 1233
Q ss_pred CCCCcccchhhHHHHHHHHhhhcccccccccccchhhhhhhhhhhcccceeeecCCcHHhhhhcCCCCc-----------
Q 041608 220 FQGSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLNFKD----------- 288 (448)
Q Consensus 220 ~~~~~~~~~~~~~w~~~~~l~~q~~~~~~s~s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~~~~~~----------- 288 (448)
+.+... ..+|+..++....++.+...+.
T Consensus 127 L~g~~~-----------------------------------------~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (259)
T 3g3k_A 127 LAKQTK-----------------------------------------IEYGAVEDGATMTFFKRSKISTYDKMWAFMSSR 165 (259)
T ss_dssp HHTCSS-----------------------------------------SEEEEETTSHHHHHHHHCCSHHHHHHHHHHHHT
T ss_pred hccCCC-----------------------------------------ceEEEecCcHHHHHHhhccchhHHHHHHHHHhc
Confidence 333000 3488888888877775443321
Q ss_pred ccccccCCHHHHHHHhccCccCCceEEEEcchhhHHHHHHcCCCceEEeCCCccCCCCCeeEEEecCCccHHHHHHHHHh
Q 041608 289 SRLKKYNSTKEYANALSKESKNGGISAIIDEMPYIKAFLAKYSAHYTLTAPKNTNSTNGFGFVFQKGSSLVHDISKAIAR 368 (448)
Q Consensus 289 ~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~y~~~~~c~~l~~v~~~~~~~~~~~~~a~~k~spl~~~in~~il~ 368 (448)
..++.+.+.++++++| ..|. ||++.+...+.|++++.| ++++++.. +...+++++++|++||++.||++|.+
T Consensus 166 ~~~~~~~~~~~~~~~l----~~g~-da~i~~~~~~~~~~~~~~-~l~~~~~~--~~~~~~~~a~~k~~~l~~~in~~l~~ 237 (259)
T 3g3k_A 166 RQSVLVKSNEEGIQRV----LTSD-YAFLMESTTIEFVTQRNC-NLTQIGGL--IDSKGYGVGTPMGSPYRDKITLAILK 237 (259)
T ss_dssp HHHHEESSHHHHHHHH----HHSS-EEEEEEHHHHHHHHHHCT-TEEEESSC--SSCEEECCEEETTCTHHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHH----HhCC-eEEEechHHHHHHhcCCc-eEEEeccc--ceeeeEEEEECCCCccHHHHHHHHHH
Confidence 1235678999999999 4555 899999999999999888 79999988 88999999999999999999999999
Q ss_pred HhhcCchhHHHHHhcccCCCccCC
Q 041608 369 LREEGTLTKIENEWFIDRQSSFMH 392 (448)
Q Consensus 369 l~e~G~l~~l~~kw~~~~~~~c~~ 392 (448)
|+++|.+++|.+||++. .+|+.
T Consensus 238 l~~~G~~~~i~~kw~~~--~~c~~ 259 (259)
T 3g3k_A 238 LQEQGKLHMMKEKWWRG--NGCPE 259 (259)
T ss_dssp HHHTC-CHHHHHHHHCC----CC-
T ss_pred HHhcChHHHHHHhhcCC--CCCCC
Confidence 99999999999999996 66863
No 7
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.87 E-value=1.2e-21 Score=186.29 Aligned_cols=194 Identities=17% Similarity=0.296 Sum_probs=143.7
Q ss_pred eeEEEehHHHHHHHHHHCCCcccEEEEecCC----CCCCcCC----------------------ccccccccccceecce
Q 041608 118 LIVEGICIDVFKSAIDSLTFEVPYEFIPFED----ASGRMAG----------------------SSLYVDFTLPYTEMGI 171 (448)
Q Consensus 118 ~~~~G~~idll~~la~~l~f~~~~~~~~~~~----~~g~~~g----------------------R~~~vdFS~p~~~~~~ 171 (448)
+++.||++||++++++++|+++++...+.+. ..+.|++ |++.++||.||+.++.
T Consensus 55 ~~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~ 134 (284)
T 2a5s_A 55 KCCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGI 134 (284)
T ss_dssp EEEESHHHHHHHHHHHHHTCCEEEEECCSSSSCCEETTEECHHHHHHHTTSCSEECSSCBCCHHHHTTEEECCCCEEECE
T ss_pred ceeeEEhHHHHHHHHHHCCCCEEEEEccCCccCcccCCCHHHHHHHHhcCCcCEEEEEEEEeccccceEEeccCchhcCE
Confidence 4689999999999999999987776543211 0112221 9999999999999999
Q ss_pred EEEEEccCCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCCCC-CCcccchhhHHHHHHHHhhhccccccccc
Q 041608 172 GMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQ-GSRAHQFGMIFWYSFSTLVFSQREKLFSN 250 (448)
Q Consensus 172 ~ilv~~~~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~~~-~~~~~~~~~~~w~~~~~l~~q~~~~~~s~ 250 (448)
+++++++.....+. . +....+.++. +
T Consensus 135 ~~~~~~~~~~~~~~---d----------------------l~~~~~~~l~~~---------------------------- 161 (284)
T 2a5s_A 135 SVMVSRGTQVTGLS---D----------------------KKFQRPHDYSPP---------------------------- 161 (284)
T ss_dssp EEEEETTCCCCSTT---S----------------------HHHHSGGGSSSC----------------------------
T ss_pred EEEEECCccccccc---c----------------------cccCChhHcCCC----------------------------
Confidence 99999843211000 0 0000122233 3
Q ss_pred ccchhhhhhhhhhhcccceeeecCCcHHhhhhcCCCCcc--ccccc--CCHHHHHHHhccCccCCceEEEEcchhhHHHH
Q 041608 251 LSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLNFKDS--RLKKY--NSTKEYANALSKESKNGGISAIIDEMPYIKAF 326 (448)
Q Consensus 251 s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~~~~~~~--~~~~~--~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~y~ 326 (448)
.++|++.+++....+.+. ++.. .+..+ .+.++++++|.+|+ +||++.+...+.|+
T Consensus 162 ----------------~~vg~v~~~s~~~~l~~~-~~~~~~~i~~~~~~~~~~~l~~l~~G~----vDa~i~d~~~~~~~ 220 (284)
T 2a5s_A 162 ----------------FRFGTVPNGSTERNIRNN-YPYMHQYMTRFNQRGVEDALVSLKTGK----LDAFIYDAAVLNYK 220 (284)
T ss_dssp ----------------CCEECCTTSHHHHHHHTT-CHHHHHHHGGGCCSSHHHHHHHHHTTS----CSEEEEEHHHHHHH
T ss_pred ----------------ceEEEEeCCchHHHHHHH-HHHHHHHHHhccCCCHHHHHHHHHcCC----eeEEEEchHHHHHH
Confidence 689987666556666432 3321 34555 78999999996655 99999999999999
Q ss_pred HHcC--CCceEEeC--CCccCCCCCeeEEEecCCccHHHHHHHHHhHhhcCchhHHHHHhcccCCCccC
Q 041608 327 LAKY--SAHYTLTA--PKNTNSTNGFGFVFQKGSSLVHDISKAIARLREEGTLTKIENEWFIDRQSSFM 391 (448)
Q Consensus 327 ~~~~--c~~l~~v~--~~~~~~~~~~~~a~~k~spl~~~in~~il~l~e~G~l~~l~~kw~~~~~~~c~ 391 (448)
+++. | ++..++ .. +...+++++++|+++|++.||++|.+++++|.+++|.+||+. ..|.
T Consensus 221 ~~~~~~~-~l~~~~~~~~--~~~~~~~~a~~k~~~l~~~ln~~l~~l~~~g~~~~i~~kw~~---~~c~ 283 (284)
T 2a5s_A 221 AGRDEGC-KLVTIGSGYI--FATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWLT---GICH 283 (284)
T ss_dssp HHTCTTS-CEEEEECCCG--GGCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHTC---CCCC
T ss_pred HhcCCCC-CEEEeCCccc--cccCceEEEecCCCHHHHHHHHHHHHHHhCChHHHHHHHhhh---ccCC
Confidence 9876 7 788775 45 778899999999999999999999999999999999999997 4575
No 8
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.87 E-value=4.8e-22 Score=184.33 Aligned_cols=210 Identities=14% Similarity=0.176 Sum_probs=160.7
Q ss_pred CCCeEEEEeccCCcccceecccCCCCCeeEEEehHHHHHHHHHHC-CCcccEEEEecCC-----CCCCcC----C-----
Q 041608 91 KINKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDSL-TFEVPYEFIPFED-----ASGRMA----G----- 155 (448)
Q Consensus 91 ~~~~l~V~~~~~p~~p~~~~~~d~~~~~~~~G~~idll~~la~~l-~f~~~~~~~~~~~-----~~g~~~----g----- 155 (448)
+.++|+||+. +.|+||.+. +.++++.||++||+++|+++| |++++++..+++. ..|..+ +
T Consensus 7 ~~~tl~vg~~-~~~pP~~~~----d~~G~~~G~~vdl~~~ia~~l~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~ 81 (243)
T 4gvo_A 7 KVQTITVGTG-TQFPNVCFL----DENGKLTGYDVELVKEIDKRLPGYKFKFKTMDFSNLLVSLGAGKVDIVAHQMEKSK 81 (243)
T ss_dssp -CEEEEEEEC-SEETTTEEE----CTTSCEESHHHHHHHHHHHTCTTEEEEEEECCGGGHHHHHHTTSCSEECSCCBCCH
T ss_pred cCCeEEEEEC-CCCCCeEEE----CCCCcEEEhHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCCEecccCCCCH
Confidence 5589999997 567888775 456779999999999999998 8888887777642 123322 1
Q ss_pred -ccccccccccceecceEEEEEccCCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcccchhhHHHH
Q 041608 156 -SSLYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQGSRAHQFGMIFWY 234 (448)
Q Consensus 156 -R~~~vdFS~p~~~~~~~ilv~~~~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~w~ 234 (448)
|++.++||.||+.....+++.++..... .+..++.|
T Consensus 82 eR~~~~~fs~p~~~~~~~~~~~~~~~~~~-------------------------------~~~~dL~g------------ 118 (243)
T 4gvo_A 82 EREKKFLFNDVAYNNFPLQLTVLDSNNSI-------------------------------NSTKDLAG------------ 118 (243)
T ss_dssp HHHHHSEECSSCCEECCEEEEEETTCCSC-------------------------------SSGGGGTT------------
T ss_pred HHhhhhhhhhhhcccccceEEEecccccc-------------------------------CchHHhcC------------
Confidence 9999999999877655544444221111 14467788
Q ss_pred HHHHhhhcccccccccccchhhhhhhhhhhcccceeeecCCcHHhhhhc----CCCCcccccccCCHHHHHHHhccCccC
Q 041608 235 SFSTLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSN----LNFKDSRLKKYNSTKEYANALSKESKN 310 (448)
Q Consensus 235 ~~~~l~~q~~~~~~s~s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~ 310 (448)
+++|+..|+....+++. ..........+.+..+++++|.+|+
T Consensus 119 --------------------------------~~v~v~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gr-- 164 (243)
T 4gvo_A 119 --------------------------------KRVITSATSNGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKTGR-- 164 (243)
T ss_dssp --------------------------------CEEEECTTCHHHHHHHHHHHHTTSCSEEEECCSGGGSHHHHHHHTS--
T ss_pred --------------------------------CeEEEecCchHHHHHHHHHHhccccceeccccCChHHHHHHHHcCC--
Confidence 89999999887777642 1111112234567788999996666
Q ss_pred CceEEEEcchhhHHHHHHcCCCceEEeCCCccCCCCCeeEEEecCCc-cHHHHHHHHHhHhhcCchhHHHHHhcccC
Q 041608 311 GGISAIIDEMPYIKAFLAKYSAHYTLTAPKNTNSTNGFGFVFQKGSS-LVHDISKAIARLREEGTLTKIENEWFIDR 386 (448)
Q Consensus 311 ~~~~a~i~~~~~~~y~~~~~c~~l~~v~~~~~~~~~~~~~a~~k~sp-l~~~in~~il~l~e~G~l~~l~~kw~~~~ 386 (448)
+||++.+...+.|+.++....+.++++. +...+++++++|++| |++.||++|.+|+++|.+++|.+||++..
T Consensus 165 --vDa~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~~~~l~~~in~~l~~l~~~G~~~~i~~kw~g~d 237 (243)
T 4gvo_A 165 --ADATISTPFAVDFQNKTSAIKEKVVGDV--LSNAKVYFMLGKDETKLSKKVDEALQSIIDDGTLKKLSEKWLGAD 237 (243)
T ss_dssp --CSBEEECHHHHHHHHHTCSSCEEEEEEE--EECCEECCEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHCGG
T ss_pred --ccEEEccHHHHHHHHhhCCCceEEeccC--CCCCcEEEEEeCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHCCCC
Confidence 9999999999999888873367888887 888999999999998 99999999999999999999999999853
No 9
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.85 E-value=8e-21 Score=177.69 Aligned_cols=216 Identities=16% Similarity=0.220 Sum_probs=151.9
Q ss_pred CCCeEEEEeccCCcccceecccCCCC-CeeEEEehHHHHHHHHHHCCCcccEEEEe------------cCC-----CCCC
Q 041608 91 KINKLRIGVPVNGFKELVNAARDPQG-TLIVEGICIDVFKSAIDSLTFEVPYEFIP------------FED-----ASGR 152 (448)
Q Consensus 91 ~~~~l~V~~~~~p~~p~~~~~~d~~~-~~~~~G~~idll~~la~~l~f~~~~~~~~------------~~~-----~~g~ 152 (448)
++++|+|++.. ++||.+.+.++++ .+++.||++||++++++++|++++++..+ +.. ..|.
T Consensus 1 ~~~~l~v~~~~--~pP~~~~~~~~~g~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~g~ 78 (265)
T 2v3u_A 1 GGVVLRVVTVL--EEPFVMVSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFKR 78 (265)
T ss_dssp CCCEEEEEECC--BTTTBEEECCSTTCCCEEESHHHHHHHHHHHHHTCEEEEEECTTCCCCCBCTTSCBCHHHHHHHTTS
T ss_pred CCeEEEEEEec--cCCeEEEecCCCCCcceEeEEEHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCcchHHHHHHcCC
Confidence 46899999975 4666665333222 27899999999999999999987766542 210 0121
Q ss_pred cC----C------ccccccccccceecceEEEEEccCCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCCCCC
Q 041608 153 MA----G------SSLYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQG 222 (448)
Q Consensus 153 ~~----g------R~~~vdFS~p~~~~~~~ilv~~~~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~~~~ 222 (448)
.+ + |++.++||.||+..+.+++++++.... +..++.+
T Consensus 79 ~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~i~---------------------------------~~~dL~~ 125 (265)
T 2v3u_A 79 ADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGTSIQ---------------------------------SLQDLSK 125 (265)
T ss_dssp CSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTCCCC---------------------------------SHHHHHT
T ss_pred cCeEEeeeEeehhhhccccccceeeeccEEEEEECCCCcc---------------------------------chhhhhh
Confidence 11 1 889999999999999999998843211 1111110
Q ss_pred CcccchhhHHHHHHHHhhhcccccccccccchhhhhhhhhhhcccceeeecCCcHHhhhhcCCCCc--------------
Q 041608 223 SRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLNFKD-------------- 288 (448)
Q Consensus 223 ~~~~~~~~~~w~~~~~l~~q~~~~~~s~s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~~~~~~-------------- 288 (448)
. +- ...|+..++....++++.+...
T Consensus 126 ~------------------------------v~-----------v~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 164 (265)
T 2v3u_A 126 Q------------------------------TD-----------IPYGTVLDSAVYQHVRMKGLNPFERDSMYSQMWRMI 164 (265)
T ss_dssp C------------------------------SS-----------SCEECBTTSHHHHHHHHHHTCTTCSCTHHHHHHHHH
T ss_pred h------------------------------hc-----------EEEEEeccHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 0 00 2344445555555554332221
Q ss_pred ----ccccccCCHHHHHHHhccCccCCceEEEEcchhhHHHHHHcC--CCceEEeCCCccCCCCCeeEEEecCCccHHHH
Q 041608 289 ----SRLKKYNSTKEYANALSKESKNGGISAIIDEMPYIKAFLAKY--SAHYTLTAPKNTNSTNGFGFVFQKGSSLVHDI 362 (448)
Q Consensus 289 ----~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~y~~~~~--c~~l~~v~~~~~~~~~~~~~a~~k~spl~~~i 362 (448)
.++..+.+.++++++|.+|+ + |++.+...+.|++++. | ++++++.. +...+++++++|++||++.|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~l~~G~----~-a~~~~~~~~~~~~~~~~~~-~l~~~~~~--~~~~~~~~~~~k~~~l~~~i 236 (265)
T 2v3u_A 165 NRSNGSENNVLESQAGIQKVKYGN----Y-AFVWDAAVLEYVAINDPDC-SFYTVGNT--VADRGYGIALQHGSPYRDVF 236 (265)
T ss_dssp CC-----CCBSSHHHHHHHHHHSS----C-EEEEEHHHHHHHHHHCTTC-CEEEEC-----CCEEECCEEETTCTTHHHH
T ss_pred HhhcCcccccCCHHHHHHHHHcCC----E-EEEEcchHHHHHHhcCCCc-cEEEeccc--cCCcceEEEEeCCCccHHHH
Confidence 12346789999999996666 8 8999999999988764 6 68988887 88899999999999999999
Q ss_pred HHHHHhHhhcCchhHHHHHhcccCCCccC
Q 041608 363 SKAIARLREEGTLTKIENEWFIDRQSSFM 391 (448)
Q Consensus 363 n~~il~l~e~G~l~~l~~kw~~~~~~~c~ 391 (448)
|++|.+|.++|.+++|.+||+... .+|.
T Consensus 237 n~~l~~l~~~g~~~~i~~kw~~~~-~~c~ 264 (265)
T 2v3u_A 237 SQRILELQQSGDMDILKHKWWPKN-GQCD 264 (265)
T ss_dssp HHHHHHHHHHTHHHHHHHHHCCCC-CC--
T ss_pred HHHHHHHhhCChHHHHHhhcCCCc-CcCC
Confidence 999999999999999999999988 8885
No 10
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.85 E-value=1e-20 Score=174.23 Aligned_cols=206 Identities=19% Similarity=0.295 Sum_probs=166.5
Q ss_pred CeEEEEeccCCcccceecccCCCCCeeEEEehHHHHHHHHHHCCCcccEEEEecCC-----CCCCcC----C------cc
Q 041608 93 NKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDSLTFEVPYEFIPFED-----ASGRMA----G------SS 157 (448)
Q Consensus 93 ~~l~V~~~~~p~~p~~~~~~d~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~-----~~g~~~----g------R~ 157 (448)
++|+||+. +.++||.+.. | .++++.|+++|+++++++++|++++++..++.. ..|..+ + |+
T Consensus 3 ~~l~v~~~-~~~~P~~~~~-~--~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~ 78 (237)
T 3kzg_A 3 LNLTIGTS-KFNPPFEVWS-G--NNSSLYGFDIDLMQEICRRLHATCTFEAYIFDDLFPALKNREVDLVIASMIITDERK 78 (237)
T ss_dssp CEEEEEEE-SEETTTEECC-C--TTSCCBSHHHHHHHHHHHHTTCEEEEEEECGGGHHHHHHTTSSSEECSSCBCCTTGG
T ss_pred ceEEEEEC-CCCCCeEEEe-C--CCCCEeeehHHHHHHHHHHhCCceEEEEcCHHHHHHHHhCCCCCEEEEccccChhHh
Confidence 78999997 4577777630 1 445689999999999999999998888877642 123322 1 99
Q ss_pred ccccccccceecceEEEEEccCCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcccchhhHHHHHHH
Q 041608 158 LYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQGSRAHQFGMIFWYSFS 237 (448)
Q Consensus 158 ~~vdFS~p~~~~~~~ilv~~~~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~w~~~~ 237 (448)
+.++||.||+..+.+++++++.... +..++.|
T Consensus 79 ~~~~fs~p~~~~~~~~~~~~~~~~~---------------------------------~~~dL~g--------------- 110 (237)
T 3kzg_A 79 KHFIFSLPYMESNSQYITTVDSKIS---------------------------------TFDDLHG--------------- 110 (237)
T ss_dssp GTCEECCCSBCCEEEEEEETTCSCC---------------------------------SGGGGTT---------------
T ss_pred ccceeeeeeeecceEEEEECCCCCC---------------------------------CHHHhCC---------------
Confidence 9999999999999999999843311 4567888
Q ss_pred HhhhcccccccccccchhhhhhhhhhhcccceeeecCCcHHhhhhcCCCCcccccccCCHHHHHHHhccCccCCceEEEE
Q 041608 238 TLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLNFKDSRLKKYNSTKEYANALSKESKNGGISAII 317 (448)
Q Consensus 238 ~l~~q~~~~~~s~s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i 317 (448)
+++|+..|+.....+.+. ++..++..+.+.++++++|.+|+ +||++
T Consensus 111 -----------------------------~~i~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~G~----vDa~~ 156 (237)
T 3kzg_A 111 -----------------------------KKIGVRKGTPYARQVLSE-NRNNQVIFYELIQDMLLGLSNNQ----VDASL 156 (237)
T ss_dssp -----------------------------CEEEEETTSTHHHHHHHT-CSSCEEEEESSHHHHHHHHHTTS----SSEEE
T ss_pred -----------------------------CEEEEecCCHHHHHHHHh-CCCCcEEEeCCHHHHHHHHHcCC----CCEEE
Confidence 899999999977776533 34457788999999999996665 99999
Q ss_pred cchhhHHHHHHcCC------C-ceEEeCCCccC-CCCCeeEEEecCCc-cHHHHHHHHHhHhhcCchhHHHHHhcccC
Q 041608 318 DEMPYIKAFLAKYS------A-HYTLTAPKNTN-STNGFGFVFQKGSS-LVHDISKAIARLREEGTLTKIENEWFIDR 386 (448)
Q Consensus 318 ~~~~~~~y~~~~~c------~-~l~~v~~~~~~-~~~~~~~a~~k~sp-l~~~in~~il~l~e~G~l~~l~~kw~~~~ 386 (448)
.+...+.+++++.. . ++++++.. + ...+++++++|++| +++.||++|.+|.++|.+++|.+||+...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~G~~~~i~~k~~~~~ 232 (237)
T 3kzg_A 157 MDYEAAKYWMASEPYAYKLIGKKYKLIGKK--ISIGEGYSIMANPDQFVLIKKINKILLEMEADGTYLRLYSEYFEGH 232 (237)
T ss_dssp EEHHHHHHHHTTSSTTHHHHCCSEEEEEEE--EECTTCBCCEECGGGHHHHHHHHHHHHHHHHSSHHHHHHHHHC---
T ss_pred eCcHHHHHHHHhCCccccccCCceEEecCc--cccCccEEEEEcCCCHHHHHHHHHHHHHHHHCCcHHHHHHHHhCcc
Confidence 99999999998754 2 68888877 7 88999999999987 99999999999999999999999999975
No 11
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.85 E-value=1.3e-20 Score=174.37 Aligned_cols=213 Identities=17% Similarity=0.361 Sum_probs=171.9
Q ss_pred CCCeEEEEeccCCcccceecccCCCCCeeEEEehHHHHHHHHHHCCCcccEEEEecCCC-----CCCcC----C------
Q 041608 91 KINKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDSLTFEVPYEFIPFEDA-----SGRMA----G------ 155 (448)
Q Consensus 91 ~~~~l~V~~~~~p~~p~~~~~~d~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~-----~g~~~----g------ 155 (448)
+.++|+|++. +.++||.+. +.++++.|+++||++++++++|++++++..++... .|..+ +
T Consensus 3 ~~~~l~v~~~-~~~~P~~~~----~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~ 77 (245)
T 3k4u_A 3 LRGELRVGLE-PGYLPFEMK----DKKGNVIGFDVDLAREMAKAMGVKLKLVPTSWDGLIPGLVTEKFDIIISGMTISQE 77 (245)
T ss_dssp CCSEEEEEEC-TTSTTTCEE----ETTTEEESHHHHHHHHHHHHHTCEEEEEECCGGGHHHHHHTTSCSEECSSCBCCHH
T ss_pred cCCeEEEEEC-CCcCCeeEE----CCCCCCccchHHHHHHHHHHhCCeEEEEEccHHHHHHHHhCCCcCEEEecCcCCHH
Confidence 4589999998 457777764 35677999999999999999999888877665421 22222 1
Q ss_pred ccccccccccceecceEEEEEccCCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCCCC--CCcccchhhHHH
Q 041608 156 SSLYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQ--GSRAHQFGMIFW 233 (448)
Q Consensus 156 R~~~vdFS~p~~~~~~~ilv~~~~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~~~--~~~~~~~~~~~w 233 (448)
|.+.++||.||+..+.+++++++....+ .+..++. |
T Consensus 78 r~~~~~~s~p~~~~~~~~~~~~~~~~~i-------------------------------~~~~dL~~~g----------- 115 (245)
T 3k4u_A 78 RNLRVNFVEPYIVVGQSLLVKKGLEKGV-------------------------------KSYKDLDKPE----------- 115 (245)
T ss_dssp HHTTSEECSCSEEECEEEEEETTTTTTC-------------------------------CSGGGGCCSS-----------
T ss_pred HHhhcCcchhhheeceEEEEECCccccc-------------------------------CCHHHhccCC-----------
Confidence 8899999999999999999998532221 1345666 6
Q ss_pred HHHHHhhhcccccccccccchhhhhhhhhhhcccceeeecCCcHHhhhhcCCCCcccccccCCHHHHHHHhccCccCCce
Q 041608 234 YSFSTLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLNFKDSRLKKYNSTKEYANALSKESKNGGI 313 (448)
Q Consensus 234 ~~~~~l~~q~~~~~~s~s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 313 (448)
+++|+..|+....++++. .+..+++.+++..+++++|.+|+ +
T Consensus 116 ---------------------------------~~i~v~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~L~~Gr----v 157 (245)
T 3k4u_A 116 ---------------------------------LTLVTKFGVSAEYAAKRL-FKNAKLKTYDTEAEAVQEVLNGK----A 157 (245)
T ss_dssp ---------------------------------CEEEEETTSHHHHHHHHH-CSSSEEEEESSHHHHHHHHHSSS----S
T ss_pred ---------------------------------cEEEEeCCcHHHHHHHhh-CCcCCEEEeCCHHHHHHHHHcCC----C
Confidence 899999999999888643 34567788999999999996666 9
Q ss_pred EEEEcchhhHHHHHHcC-CCceEEeCCCccCCCCCeeEEEecCCc-cHHHHHHHHHhHhhcCchhHHHHHhcccCCCccC
Q 041608 314 SAIIDEMPYIKAFLAKY-SAHYTLTAPKNTNSTNGFGFVFQKGSS-LVHDISKAIARLREEGTLTKIENEWFIDRQSSFM 391 (448)
Q Consensus 314 ~a~i~~~~~~~y~~~~~-c~~l~~v~~~~~~~~~~~~~a~~k~sp-l~~~in~~il~l~e~G~l~~l~~kw~~~~~~~c~ 391 (448)
||++.+...+.+++++. ...+..++.. +...+++++++|++| +++.||++|.+|.++|.++++.+||++.. .-+.
T Consensus 158 Da~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~~-~~~~ 234 (245)
T 3k4u_A 158 DMFIFDLPFNVAFMAQKGQGYLVHLDTS--LTYEPLGWAIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWFVDT-KWLE 234 (245)
T ss_dssp EEEEEEHHHHHHHHHHTTTTTEEEECCC--CSCEEECCEECTTCHHHHHHHHHHHHHHHHHSHHHHHHHHHHTCC-SGGG
T ss_pred cEEEEcHHHHHHHHhcCCccceeecCCC--cccccEEEEEcCCCHHHHHHHHHHHHHHHhCcHHHHHHHHhcCcc-ccch
Confidence 99999999999998776 3467778887 888999999999998 99999999999999999999999999986 4433
No 12
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.85 E-value=1.3e-20 Score=173.34 Aligned_cols=201 Identities=16% Similarity=0.298 Sum_probs=162.7
Q ss_pred CCCeEEEEeccCCcccceecccCCCCCeeEEEehHHHHHHHHHHCCCcccEEEEecCCC-----CCCcC----C------
Q 041608 91 KINKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDSLTFEVPYEFIPFEDA-----SGRMA----G------ 155 (448)
Q Consensus 91 ~~~~l~V~~~~~p~~p~~~~~~d~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~-----~g~~~----g------ 155 (448)
..++|+|++. +.|+||.+. +.++++.||++||++++++++|++++++..++... .|..+ +
T Consensus 3 ~a~~l~v~~~-~~~~P~~~~----~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~ 77 (232)
T 3i6v_A 3 LADTVRMGTE-GAYPPYNFI----NDAGEVDGFERELGDELCKRAGLTCEWVKNDWDSIIPNLVSGNYDTIIAGMSITDE 77 (232)
T ss_dssp ---CEEEEEC-SEETTTEEE----CTTSCEESHHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHTTSCSEECSSCBCCHH
T ss_pred CCCEEEEEEC-CCCCCeeEE----CCCCCEeeehHHHHHHHHHHcCCceEEEECCHHHHHHHHHCCCCCEEEeCCcCCHH
Confidence 3478999998 457777775 45677999999999999999999888877766421 22222 1
Q ss_pred ccccccccccceecceEEEEEccCCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcccchhhHHHHH
Q 041608 156 SSLYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQGSRAHQFGMIFWYS 235 (448)
Q Consensus 156 R~~~vdFS~p~~~~~~~ilv~~~~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~w~~ 235 (448)
|++.++||.||+..+.+++++++.. .++.|
T Consensus 78 r~~~~~fs~p~~~~~~~~~~~~~~~-------------------------------------~dL~g------------- 107 (232)
T 3i6v_A 78 RDEVIDFTQNYIPPTASSYVATSDG-------------------------------------ADLSG------------- 107 (232)
T ss_dssp HHTTSEEEEEEECCCEEEEEESSTT-------------------------------------CCTTS-------------
T ss_pred HHhhcCcccccccCCeEEEEECCCh-------------------------------------HHhCC-------------
Confidence 9999999999999999999987431 23333
Q ss_pred HHHhhhcccccccccccchhhhhhhhhhhcccceeeecCCcHHhhhhcCCCCcccccccCCHHHHHHHhccCccCCceEE
Q 041608 236 FSTLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLNFKDSRLKKYNSTKEYANALSKESKNGGISA 315 (448)
Q Consensus 236 ~~~l~~q~~~~~~s~s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a 315 (448)
++|+..|+....++++. ..+++.+.+.++++++|.+|+ +||
T Consensus 108 --------------------------------~igv~~g~~~~~~l~~~---~~~~~~~~~~~~~~~~L~~Gr----vDa 148 (232)
T 3i6v_A 108 --------------------------------IVAAQTATIQAGYIAES---GATLVEFATPEETIAAVRNGE----ADA 148 (232)
T ss_dssp --------------------------------EEEEETTSHHHHHHHHS---SSEEEEESSHHHHHHHHHTTS----SSE
T ss_pred --------------------------------CEEEecCchHHHHHHhc---CCeEEEeCCHHHHHHHHHcCC----cCE
Confidence 68999999999998765 347788999999999996666 999
Q ss_pred EEcchhhHHHHHHcCCCceEEeCCCccCCCCCeeEEEecCCc-cHHHHHHHHHhHhhcCchhHHHHHhcccC
Q 041608 316 IIDEMPYIKAFLAKYSAHYTLTAPKNTNSTNGFGFVFQKGSS-LVHDISKAIARLREEGTLTKIENEWFIDR 386 (448)
Q Consensus 316 ~i~~~~~~~y~~~~~c~~l~~v~~~~~~~~~~~~~a~~k~sp-l~~~in~~il~l~e~G~l~~l~~kw~~~~ 386 (448)
++.+...+.|++++...++.+++... +...+++++++|++| +++.||++|.+|.++|.+++|.+||++..
T Consensus 149 ~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~G~~~~i~~k~~~~~ 219 (232)
T 3i6v_A 149 VFADRDYLVPIVAESGGELMFVGDDV-PLGGGVGMGLRESDGELRGKFDAAITSMKEDGTLNTMIKKWFGED 219 (232)
T ss_dssp EEEEHHHHHHHHHHTTTSSEEEEEEE-ECSSCEEEEECTTCHHHHHHHHHHHHHHHHTSHHHHHHHHHHCTT
T ss_pred EEEChHHHHHHHHhCCCCeEEecCCC-CCCCcEEEEEeCCCHHHHHHHHHHHHHHHHCChHHHHHHHHcCCC
Confidence 99999999999988722677777531 567899999999998 99999999999999999999999999985
No 13
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.84 E-value=1.7e-20 Score=175.54 Aligned_cols=213 Identities=17% Similarity=0.269 Sum_probs=158.1
Q ss_pred CCCeEEEEeccCCcccceecccC--C-CCCeeEEEehHHHHHHHHHHCCCcccEEEE-------------ecCC-----C
Q 041608 91 KINKLRIGVPVNGFKELVNAARD--P-QGTLIVEGICIDVFKSAIDSLTFEVPYEFI-------------PFED-----A 149 (448)
Q Consensus 91 ~~~~l~V~~~~~p~~p~~~~~~d--~-~~~~~~~G~~idll~~la~~l~f~~~~~~~-------------~~~~-----~ 149 (448)
++++|+|++.+ ++||.+.+.+ + ++++++.||++||+++|++++|++++++.. ++.. .
T Consensus 2 ~~~~l~v~~~~--~pP~~~~~~~~~~~~~~g~~~G~~~dl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~ 79 (263)
T 1mqi_A 2 ANKTVVVTTIL--ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELV 79 (263)
T ss_dssp -CCCEEEEECC--BTTTBEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHH
T ss_pred CCeEEEEEEec--CCCcEEEecCcccccCCCceeeeHHHHHHHHHHHcCceEEEEEccccccCccCCCCCCcHHHHHHHH
Confidence 35789999975 6677764221 0 124789999999999999999998777766 3321 0
Q ss_pred CCCcC----C------ccccccccccceecceEEEEEccCCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCC
Q 041608 150 SGRMA----G------SSLYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDE 219 (448)
Q Consensus 150 ~g~~~----g------R~~~vdFS~p~~~~~~~ilv~~~~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~ 219 (448)
.|..+ + |++.++||.||+..+.+++++++.... +..+
T Consensus 80 ~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~i~---------------------------------~~~d 126 (263)
T 1mqi_A 80 YGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIE---------------------------------SAED 126 (263)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTCSCC---------------------------------SHHH
T ss_pred cCCcCEEEEeeEecHHHHhhcccccceecccEEEEEcCccccC---------------------------------CHHH
Confidence 12221 1 889999999999999999999843211 2234
Q ss_pred CCCCcccchhhHHHHHHHHhhhcccccccccccchhhhhhhhhhhcccc---eeeecCCcHHhhhhcCCCC---------
Q 041608 220 FQGSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWLFVLASMDN---IGSQLGSVVPGALSNLNFK--------- 287 (448)
Q Consensus 220 ~~~~~~~~~~~~~w~~~~~l~~q~~~~~~s~s~Ri~~~~W~~~~sSy~~---v~~~~~s~~~~~l~~~~~~--------- 287 (448)
+.| ++ +|++.+++....+.+..++
T Consensus 127 L~g--------------------------------------------~~~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~ 162 (263)
T 1mqi_A 127 LSK--------------------------------------------QTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYM 162 (263)
T ss_dssp HHT--------------------------------------------CSSSEEECBSSSHHHHHHHHCCSHHHHHHHHHH
T ss_pred Hhc--------------------------------------------ccCeeEEEEeccHHHHHHHhccchhHHHHHHHH
Confidence 444 44 5655444444444323221
Q ss_pred --cccccccCCHHHHHHHh--ccCccCCceEEEEcchhhHHHHHHcC-CCceEEeCCCccCCCCCeeEEEecCCccHHHH
Q 041608 288 --DSRLKKYNSTKEYANAL--SKESKNGGISAIIDEMPYIKAFLAKY-SAHYTLTAPKNTNSTNGFGFVFQKGSSLVHDI 362 (448)
Q Consensus 288 --~~~~~~~~~~~~~~~~l--~~~~~~~~~~a~i~~~~~~~y~~~~~-c~~l~~v~~~~~~~~~~~~~a~~k~spl~~~i 362 (448)
..+++.+.+..+++++| .+| . ||++.+...+.|++++. | ++.+++.. +...+++++++|+++|++.|
T Consensus 163 ~~~~~~~~~~~~~~~~~~l~~~~g----~-da~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~k~~~l~~~i 234 (263)
T 1mqi_A 163 RSAEPSVFVRTTAEGVARVRKSKG----K-YAYLLESTMNEYIEQRKPC-DTMKVGGN--LDSKGYGIATPKGSSLGNAV 234 (263)
T ss_dssp HHCSSCCCBSSHHHHHHHHHHTTT----S-EEEEEEHHHHHHHTTSTTC-CEEEESCC--SCCEEECCEEETTCTTHHHH
T ss_pred hhCCCceecCCHHHHHHHHhhcCC----c-EEEEechHHHHHHHhcCCC-ceEEcCCc--ccccceEEEEeCCCccHHHH
Confidence 12456788999999999 443 3 79999999999988877 6 68888877 88889999999999999999
Q ss_pred HHHHHhHhhcCchhHHHHHhcccCCCccC
Q 041608 363 SKAIARLREEGTLTKIENEWFIDRQSSFM 391 (448)
Q Consensus 363 n~~il~l~e~G~l~~l~~kw~~~~~~~c~ 391 (448)
|++|.+|.++|.+++|.+||+... .+|+
T Consensus 235 n~~l~~l~~~g~~~~i~~k~~~~~-~~C~ 262 (263)
T 1mqi_A 235 NLAVLKLNEQGLLDKLKNKWWYDK-GECG 262 (263)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHTTT-CSCC
T ss_pred HHHHHHHHhcccHHHHHHHHcCCC-CCCC
Confidence 999999999999999999999988 8896
No 14
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.84 E-value=1.6e-20 Score=174.38 Aligned_cols=207 Identities=18% Similarity=0.352 Sum_probs=170.3
Q ss_pred CCCeEEEEeccCCcccceecccCCCCCeeEEEehHHHHHHHHHHCCCcccEEEEecCC-----CCCCcCC----------
Q 041608 91 KINKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDSLTFEVPYEFIPFED-----ASGRMAG---------- 155 (448)
Q Consensus 91 ~~~~l~V~~~~~p~~p~~~~~~d~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~-----~~g~~~g---------- 155 (448)
..++|+|++. +.|+||.+. .++++.|+++||++++++++|++++++..++.. ..|..+.
T Consensus 22 ~~~~l~v~~~-~~~~P~~~~-----~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~ 95 (249)
T 4f3p_A 22 MAKELVVGTD-TSFMPFEFK-----QGDKYVGFDLDLWAEIAKGAGWTYKIQPMDFAGLIPALQTQNIDVALSGMTIKEE 95 (249)
T ss_dssp --CCEEEEEE-SCBTTTBEE-----ETTEEESHHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHTTSCSEEEEEEECCHH
T ss_pred cCceEEEEeC-CCCCCeEEe-----cCCeEEEEhHHHHHHHHHHcCCceEEEecCHHHHHHHHHCCCCCEEEeccccCHH
Confidence 5689999998 457777763 346799999999999999999998888877642 1333322
Q ss_pred ccccccccccceecceEEEEEccCCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcccchhhHHHHH
Q 041608 156 SSLYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQGSRAHQFGMIFWYS 235 (448)
Q Consensus 156 R~~~vdFS~p~~~~~~~ilv~~~~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~w~~ 235 (448)
|.+.++||.||+..+.+++++++... . .+..++.|
T Consensus 96 r~~~~~~s~p~~~~~~~~~~~~~~~~-i-------------------------------~~~~dL~g------------- 130 (249)
T 4f3p_A 96 RRKAIDFSDPYYDSGLAAMVQANNTT-I-------------------------------KSIDDLNG------------- 130 (249)
T ss_dssp HHTTEEECSCCEEEEEEEEEETTCCS-C-------------------------------CSSGGGTT-------------
T ss_pred HHcCcceecceeeccEEEEEECCCCC-c-------------------------------CChHHhCC-------------
Confidence 88999999999999999999884321 1 14567788
Q ss_pred HHHhhhcccccccccccchhhhhhhhhhhcccceeeecCCcHHhhhhcCCCCcccccccCCHHHHHHHhccCccCCceEE
Q 041608 236 FSTLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLNFKDSRLKKYNSTKEYANALSKESKNGGISA 315 (448)
Q Consensus 236 ~~~l~~q~~~~~~s~s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a 315 (448)
++||+..|+....++++. .+..++..+++.++.+++|.+|+ +|+
T Consensus 131 -------------------------------~~i~v~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~L~~Gr----vDa 174 (249)
T 4f3p_A 131 -------------------------------KVIAAKTGTATIDWIKAH-LKPKEIRQFPNIDQAYLALEAGR----VDA 174 (249)
T ss_dssp -------------------------------SEEEEETTSHHHHHHHHH-CCCSEEEEESSHHHHHHHHHTTS----SSE
T ss_pred -------------------------------CEEEEeCCChHHHHHHhc-CCCceEEEcCCHHHHHHHHHcCC----eeE
Confidence 899999999998888643 34557788999999999996666 999
Q ss_pred EEcchhhHHHHHHcC-CCceEEeCCCccCCCCCeeEEEecCCccHHHHHHHHHhHhhcCchhHHHHHhcccC
Q 041608 316 IIDEMPYIKAFLAKY-SAHYTLTAPKNTNSTNGFGFVFQKGSSLVHDISKAIARLREEGTLTKIENEWFIDR 386 (448)
Q Consensus 316 ~i~~~~~~~y~~~~~-c~~l~~v~~~~~~~~~~~~~a~~k~spl~~~in~~il~l~e~G~l~~l~~kw~~~~ 386 (448)
++.+...+.+++++. ..++.+++.. +...+++++++|++|+++.||++|.++.++|.+++|.+||++..
T Consensus 175 ~i~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~k~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~ 244 (249)
T 4f3p_A 175 AMHDTPNVLFFVNNEGKGRVKVAGAP--VSGDKYGIGFPKGSPLVAKVNAELARMKADGRYAKIYKKWFGSE 244 (249)
T ss_dssp EEEEHHHHHHHHHTTTTTTEEEEEEE--EEEEEEEEEEETTCTHHHHHHHHHHHHHHHTHHHHHHHHHHSSC
T ss_pred EEeCcHHHHHHHHhCCCCceEEecCC--CCCccEEEEEcCCchHHHHHHHHHHHHHhCCcHHHHHHHHcCCC
Confidence 999999999999887 3468888877 78889999999999999999999999999999999999999874
No 15
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.84 E-value=4.3e-20 Score=173.30 Aligned_cols=208 Identities=20% Similarity=0.327 Sum_probs=171.1
Q ss_pred CCCeEEEEeccCCcccceecccCCCCCeeEEEehHHHHHHHHHHCCCcccEEEEecCCC-----CCCcC----C------
Q 041608 91 KINKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDSLTFEVPYEFIPFEDA-----SGRMA----G------ 155 (448)
Q Consensus 91 ~~~~l~V~~~~~p~~p~~~~~~d~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~-----~g~~~----g------ 155 (448)
+.++|+||+. +.|+||.+. +.++++.|+++||++++++++|++++++..++... .|..+ +
T Consensus 19 ~~~~l~v~~~-~~~~P~~~~----~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~ 93 (268)
T 3hv1_A 19 KEKKIKIGFD-ATFVPMGYE----EKDGSYIGFDIDLANAVFKLYGIDVEWQAIDWDMKETELKNGTIDLIWNGYSVTDE 93 (268)
T ss_dssp HHTEEEEEEC-TEETTTEEE----CTTSCEECHHHHHHHHHHHTTTCEEEEEECCGGGHHHHHHHTSCSEECSSCBCCHH
T ss_pred cCCcEEEEEC-CCCCCceEE----CCCCCEEEehHHHHHHHHHHhCCcEEEEECCHHHHHHHHHCCCCCEEEecCccCHH
Confidence 6689999998 456777775 44677999999999999999999888777665421 12222 1
Q ss_pred ccccccccccceecceEEEEEccCCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcccchhhHHHHH
Q 041608 156 SSLYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQGSRAHQFGMIFWYS 235 (448)
Q Consensus 156 R~~~vdFS~p~~~~~~~ilv~~~~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~w~~ 235 (448)
|++.++||.||+..+.+++++++.... +..++.|
T Consensus 94 r~~~~~fs~p~~~~~~~~~~~~~~~i~---------------------------------~~~dL~g------------- 127 (268)
T 3hv1_A 94 RKQSADFTEPYMVNEQVLVTKKSSGID---------------------------------SVAGMAG------------- 127 (268)
T ss_dssp HHTTCEECCCCEEECEEEEEEGGGCCC---------------------------------SSGGGTT-------------
T ss_pred HHhcCcCcHHHeeCceEEEEECCCCCC---------------------------------CHHHhCC-------------
Confidence 899999999999999999999843221 4567788
Q ss_pred HHHhhhcccccccccccchhhhhhhhhhhcccceeeecCCcHHhhhhcCC------CCcccccccCCHHHHHHHhccCcc
Q 041608 236 FSTLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLN------FKDSRLKKYNSTKEYANALSKESK 309 (448)
Q Consensus 236 ~~~l~~q~~~~~~s~s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~~~------~~~~~~~~~~~~~~~~~~l~~~~~ 309 (448)
+++|+..|+....++.... +++.+++.+.+.++++++|.+|+
T Consensus 128 -------------------------------~~i~v~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gr- 175 (268)
T 3hv1_A 128 -------------------------------KTLGAQAGSSGYDAFNASPKILKDVVANQKVVQYSTFTQALIDLNSGR- 175 (268)
T ss_dssp -------------------------------CCEEEETTCHHHHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHHTS-
T ss_pred -------------------------------CEEEEEeCCchHHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHcCC-
Confidence 8999999999987775332 33456778899999999996666
Q ss_pred CCceEEEEcchhhHHHHHHcCC--CceEEeCCCccCCCCCeeEEEecCCc-cHHHHHHHHHhHhhcCchhHHHHHhcccC
Q 041608 310 NGGISAIIDEMPYIKAFLAKYS--AHYTLTAPKNTNSTNGFGFVFQKGSS-LVHDISKAIARLREEGTLTKIENEWFIDR 386 (448)
Q Consensus 310 ~~~~~a~i~~~~~~~y~~~~~c--~~l~~v~~~~~~~~~~~~~a~~k~sp-l~~~in~~il~l~e~G~l~~l~~kw~~~~ 386 (448)
+||++.+...+.|++++.. .++.+++.. +...+++++++|+++ +++.||++|.+|.++|.+++|.+||++..
T Consensus 176 ---vDa~i~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~~ 250 (268)
T 3hv1_A 176 ---IDGLLIDRVYANYYLEKSGVLDQYNVMPAG--YEGESFAVGARKVDKTLIKKINQGFETLYKNGEFQKISNKWFGED 250 (268)
T ss_dssp ---CSEEEEEHHHHHHHHHHTTCGGGEEEEECS--SCCEEECCEECTTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSC
T ss_pred ---CCEEEeCHHHHHHHHHhCCCCCceEECCCC--CCCCcEEEEEcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHhcCCC
Confidence 9999999999999998763 478888887 888999999999998 99999999999999999999999999874
No 16
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=99.84 E-value=4e-20 Score=170.52 Aligned_cols=204 Identities=16% Similarity=0.245 Sum_probs=167.7
Q ss_pred CCCeEEEEeccCCcccceecccCCCCCeeEEEehHHHHHHHHHHCCCcccEEEEecCC-----CCCCcC----C------
Q 041608 91 KINKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDSLTFEVPYEFIPFED-----ASGRMA----G------ 155 (448)
Q Consensus 91 ~~~~l~V~~~~~p~~p~~~~~~d~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~-----~~g~~~----g------ 155 (448)
+.++|+|++. +.++||.+. +.++++.|+++||++++++++|++++++..++.. ..|..+ +
T Consensus 9 ~~~~l~v~~~-~~~~P~~~~----~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~ 83 (242)
T 3del_B 9 NSEKFIVGTN-ATYPPFEFV----DKRGEVVGFDIDLAREISNKLGKTLDVREFSFDALILNLKQHRIDAVITGMSITPS 83 (242)
T ss_dssp --CEEEEEEC-SCBTTTBEE----CTTSCEESHHHHHHHHHHHHHTCEEEEEECCGGGHHHHHHTTSSSEECSSBBCCHH
T ss_pred cCCcEEEEeC-CCCCCeeEE----CCCCCEEEeeHHHHHHHHHHcCCceEEEEcCHHHHHHHHhCCCcCEEEecCcCCHH
Confidence 4589999997 457777764 4567799999999999999999987777665542 122222 2
Q ss_pred ccccccccccce--ecceEEEEEccCCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcccchhhHHH
Q 041608 156 SSLYVDFTLPYT--EMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQGSRAHQFGMIFW 233 (448)
Q Consensus 156 R~~~vdFS~p~~--~~~~~ilv~~~~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~w 233 (448)
|.+.++| .||+ ..+.+++++++.... +..++.|
T Consensus 84 r~~~~~~-~p~~~~~~~~~~~~~~~~~i~---------------------------------~~~dL~g----------- 118 (242)
T 3del_B 84 RLKEILM-IPYYGEEIKHLVLVFKGENKH---------------------------------PLPLTQY----------- 118 (242)
T ss_dssp HHTTEEE-EEEEEEEESEEEEEEESCCSC---------------------------------CCCGGGS-----------
T ss_pred HHhcccc-eeeeecCCceEEEEeCCCCCC---------------------------------CHHHhCC-----------
Confidence 8899999 9999 899999998852211 4467778
Q ss_pred HHHHHhhhcccccccccccchhhhhhhhhhhcccceeeecCCcHHhhhhcCCCCcccccccCCHHHHHHHhccCccCCce
Q 041608 234 YSFSTLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLNFKDSRLKKYNSTKEYANALSKESKNGGI 313 (448)
Q Consensus 234 ~~~~~l~~q~~~~~~s~s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 313 (448)
+++|+..|+....++.+ .+..+++.+.+.++++++|.+|+ +
T Consensus 119 ---------------------------------~~i~v~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~~L~~g~----v 159 (242)
T 3del_B 119 ---------------------------------RSVAVQTGTYQEAYLQS--LSEVHIRSFDSTLEVLMEVMHGK----S 159 (242)
T ss_dssp ---------------------------------SCEEEETTSHHHHHHHH--STTCCEEEESSHHHHHHHHHTTS----S
T ss_pred ---------------------------------CEEEEEcCcHHHHHHHh--CCCceEEEECCHHHHHHHHHcCC----C
Confidence 89999999999999875 45567788999999999996666 9
Q ss_pred EEEEcchhhHHHHHHcCCCceEEeCCCccCCCCC----eeEEEecCCc-cHHHHHHHHHhHhhcCchhHHHHHhcccC
Q 041608 314 SAIIDEMPYIKAFLAKYSAHYTLTAPKNTNSTNG----FGFVFQKGSS-LVHDISKAIARLREEGTLTKIENEWFIDR 386 (448)
Q Consensus 314 ~a~i~~~~~~~y~~~~~c~~l~~v~~~~~~~~~~----~~~a~~k~sp-l~~~in~~il~l~e~G~l~~l~~kw~~~~ 386 (448)
||++.+...+.+++++.. .+++++.. +.... ++++++|+++ +++.||++|.+|.++|.+++|.+||+...
T Consensus 160 Da~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~ 234 (242)
T 3del_B 160 PVAVLEPSIAQVVLKDFP-ALSTATID--LPEDQWVLGYGIGVASDRPALALKIEAAVQEIRKEGVLAELEQKWGLNN 234 (242)
T ss_dssp SEEEECHHHHHHHGGGCT-TEEEEEEE--CCGGGCEEEEEEEEETTCHHHHHHHHHHHHHHHHTTHHHHHHHHTTGGG
T ss_pred CEEEecHHHHHHHHHhCC-CeEEecCc--cCcccccceEEEEEeCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHCCCC
Confidence 999999999999999887 48888766 77777 9999999998 99999999999999999999999999984
No 17
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.82 E-value=8.5e-20 Score=167.01 Aligned_cols=207 Identities=14% Similarity=0.210 Sum_probs=170.6
Q ss_pred CCCeEEEEeccCCcccceecccCCCCCeeEEEehHHHHHHHHHHCCCcccEEEEecCC-----CCCCcCC---------c
Q 041608 91 KINKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDSLTFEVPYEFIPFED-----ASGRMAG---------S 156 (448)
Q Consensus 91 ~~~~l~V~~~~~p~~p~~~~~~d~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~-----~~g~~~g---------R 156 (448)
..++|+|++. +.++||.+. +.++++.|+++|+++++++++|++++++..++.. ..|..+. |
T Consensus 9 ~~~~l~v~~~-~~~~P~~~~----~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~r 83 (234)
T 3h7m_A 9 RHRTIVVGGD-RDYPPYEFI----DQNGKPAGYNVELTRAIAEVMGMTVEFRLGAWSEMFSALKSGRVDVLQGISWSEKR 83 (234)
T ss_dssp SSSCEEEEEE-TEETTTEEE----CTTSCEESHHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHTTSSSEEEEEECCHHH
T ss_pred CCCEEEEEec-CCCCCeEEE----CCCCCEeeeEHHHHHHHHHHcCCceEEEeCCHHHHHHHHhCCCeeEEEeccCCHhH
Confidence 5689999996 456777764 4567799999999999999999998888776642 1233332 8
Q ss_pred cccccccccceecceEEEEEccCCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcccchhhHHHHHH
Q 041608 157 SLYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQGSRAHQFGMIFWYSF 236 (448)
Q Consensus 157 ~~~vdFS~p~~~~~~~ilv~~~~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~w~~~ 236 (448)
.+.++||.||+....+++++++.. .. .+..++.|
T Consensus 84 ~~~~~~s~p~~~~~~~~~~~~~~~-~~-------------------------------~~~~dL~g-------------- 117 (234)
T 3h7m_A 84 ARQIDFTPPHTIVYHAIFARRDSP-PA-------------------------------AGLEDLRG-------------- 117 (234)
T ss_dssp HTTEEEEEEEEEEEEEEEEESSSC-CC-------------------------------SSGGGGTT--------------
T ss_pred HhhcCCCccccccceEEEEECCCC-CC-------------------------------CCHHHhCC--------------
Confidence 899999999999999999998433 11 14567788
Q ss_pred HHhhhcccccccccccchhhhhhhhhhhcccceeeecCCcHHhhhhcCCCCcccccccCCHHHHHHHhccCccCCceEEE
Q 041608 237 STLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLNFKDSRLKKYNSTKEYANALSKESKNGGISAI 316 (448)
Q Consensus 237 ~~l~~q~~~~~~s~s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~ 316 (448)
+++|+..|+....++++.. +..+++.+.+.++.+++|.+|+ +||+
T Consensus 118 ------------------------------~~i~~~~g~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~g~----vDa~ 162 (234)
T 3h7m_A 118 ------------------------------RKVALHRDGIMHEYLAERG-YGKDLVLTPTPADALRLLAAGG----CDYA 162 (234)
T ss_dssp ------------------------------SCEEEETTSHHHHHHHTTT-CGGGEEEESSHHHHHHHHHTTS----SSEE
T ss_pred ------------------------------CEEEEEeCchHHHHHHhcC-CCceEEEeCCHHHHHHHHHcCC----ceEE
Confidence 8999999999999887543 3457788999999999996666 9999
Q ss_pred EcchhhHHHHHHcC-CCceEEeCCCccCCCCCeeEEEecCCc-cHHHHHHHHHhHhhcCchhHHHHHhccc
Q 041608 317 IDEMPYIKAFLAKY-SAHYTLTAPKNTNSTNGFGFVFQKGSS-LVHDISKAIARLREEGTLTKIENEWFID 385 (448)
Q Consensus 317 i~~~~~~~y~~~~~-c~~l~~v~~~~~~~~~~~~~a~~k~sp-l~~~in~~il~l~e~G~l~~l~~kw~~~ 385 (448)
+.+...+.|++++. ..++..++.. +...+++++++|++| +++.||++|.+|.++|.++++.+||++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 231 (234)
T 3h7m_A 163 VVAMVPGMYIIRENRLTNLVPVARS--IAAQRYGYAVRQGDAELLARFSEGLAILRKTGQYEAIRAKWLGV 231 (234)
T ss_dssp EEEHHHHHHHHHHTTCTTEEEEEEE--EEEEEEEEEEETTCHHHHHHHHHHHHHHHHHTHHHHHHHHSTTC
T ss_pred EeccHHHHHHHHhcCCCceEEeccc--cCCCceEEEEeCCCHHHHHHHHHHHHHHHHcCcHHHHHHHhccc
Confidence 99999999998876 4468888777 778889999999998 9999999999999999999999999975
No 18
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.82 E-value=1.8e-19 Score=163.83 Aligned_cols=204 Identities=21% Similarity=0.372 Sum_probs=160.9
Q ss_pred CeEEEEeccCCcccceecccCCCCCeeEEEehHHHHHHHHHHCCCcccEEEEecCC---------CCCCcCC------cc
Q 041608 93 NKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDSLTFEVPYEFIPFED---------ASGRMAG------SS 157 (448)
Q Consensus 93 ~~l~V~~~~~p~~p~~~~~~d~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~---------~~g~~~g------R~ 157 (448)
++|+||+. +.++||.+. +.++++.|+++|+++++++++|++++++..++.. .+..+.+ |.
T Consensus 2 ~~l~v~~~-~~~~P~~~~----~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~ 76 (227)
T 3tql_A 2 DTIKFATE-ATYPPYVYM----GPSGQVEGFGADIVKAVCKQMQAVCTISNQPWDSLIPSLKLGKFDALFGGMNITTARQ 76 (227)
T ss_dssp CEEEEEEC-SCBTTTBEE----C--CCEESHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTSCSEECSSCBCCTTGG
T ss_pred ceEEEEEc-CCCCCeeEE----CCCCCcccchHHHHHHHHHHhCCeEEEEeCCHHHHHHHHhCCCCCEEEecCcCCHhHH
Confidence 68999997 457777765 4566799999999999999999988877766531 1111111 99
Q ss_pred ccccccccceecceEEEEEccCCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcccchhhHHHHHHH
Q 041608 158 LYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQGSRAHQFGMIFWYSFS 237 (448)
Q Consensus 158 ~~vdFS~p~~~~~~~ilv~~~~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~w~~~~ 237 (448)
+.++||.||+..+.+++++++..... +..++.|
T Consensus 77 ~~~~~s~p~~~~~~~l~~~~~~~~~~--------------------------------~~~dL~g--------------- 109 (227)
T 3tql_A 77 KEVDFTDPYYTNSVSFIADKNTPLTL--------------------------------SKQGLKG--------------- 109 (227)
T ss_dssp GTEEECSCSBCCEEEEEEETTSCCCC--------------------------------STTTTTT---------------
T ss_pred hheecccceeccceEEEEeCCCCCCC--------------------------------CHHHhCC---------------
Confidence 99999999999999999998433211 4577888
Q ss_pred HhhhcccccccccccchhhhhhhhhhhcccceeeecCCcHHhhhhcCCCCcccccccCCHHHHHHHhccCccCCceEEEE
Q 041608 238 TLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLNFKDSRLKKYNSTKEYANALSKESKNGGISAII 317 (448)
Q Consensus 238 ~l~~q~~~~~~s~s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i 317 (448)
+++|+..|+....++++......++..+.+.++++++|.+|+ +||++
T Consensus 110 -----------------------------~~v~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~gr----vDa~~ 156 (227)
T 3tql_A 110 -----------------------------KIIGVQGGTTFDSYLQDSFGNSITIQRYPSEEDALMDLTSGR----VDAVV 156 (227)
T ss_dssp -----------------------------CEEEEETTSHHHHHHHHHHGGGSEEEEESSHHHHHHHHTTTS----SSEEE
T ss_pred -----------------------------CEEEEEecccHHHHHHHhccccceEEEcCCHHHHHHHHHcCC----cCEEE
Confidence 999999999998888644322157778999999999996666 99999
Q ss_pred cchhhHHHHHHcCC-CceEEeCCCccCCC-----CCeeEEEecCCc-cHHHHHHHHHhHhhcCchhHHHHHhc
Q 041608 318 DEMPYIKAFLAKYS-AHYTLTAPKNTNST-----NGFGFVFQKGSS-LVHDISKAIARLREEGTLTKIENEWF 383 (448)
Q Consensus 318 ~~~~~~~y~~~~~c-~~l~~v~~~~~~~~-----~~~~~a~~k~sp-l~~~in~~il~l~e~G~l~~l~~kw~ 383 (448)
.+...+.+++++.. .++.+++.. +.. .+++++++|++| +++.||++|.+|.++|.++++.+||+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~ 227 (227)
T 3tql_A 157 GDTPLIKQWLKQNGRREYVLIGKP--VNDPNYFGKGVGIAVKKGNQALLLKLNKALAAIKANGVYAAIVQKYF 227 (227)
T ss_dssp SCHHHHHHHHHHTTCCSEEEEEEE--CCCGGGCCSCBCCEEETTCHHHHHHHHHHHHHHHHTSHHHHHHHHHC
T ss_pred eChHHHHHHHHhCCCCCEEEecCc--ccCccccccceEEEEcCCCHHHHHHHHHHHHHHHhCChHHHHHHhhC
Confidence 99999999998873 247776654 433 355999999998 99999999999999999999999996
No 19
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.81 E-value=7.5e-20 Score=168.31 Aligned_cols=206 Identities=10% Similarity=0.112 Sum_probs=162.9
Q ss_pred CCCeEEEEeccCCcccceecccCCCCCeeEEEehHHHHHHHHHHCCCcccEEEEecCCC-----CCCcC----C------
Q 041608 91 KINKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDSLTFEVPYEFIPFEDA-----SGRMA----G------ 155 (448)
Q Consensus 91 ~~~~l~V~~~~~p~~p~~~~~~d~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~-----~g~~~----g------ 155 (448)
+.++|+||+. +.++||.+. +.++++.|+++||++++++++|++++++..++... .|..+ +
T Consensus 13 ~~~~l~v~~~-~~~~P~~~~----~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~ 87 (239)
T 3kbr_A 13 ESGVLRVATT-GDYKPFSYR----TEEGGYAGFDVDMAQRLAESLGAKLVVVPTSWPNLMRDFADDRFDIAMSGISINLE 87 (239)
T ss_dssp HHTEEEEEEC-SEETTTEEE----CTTSCEESHHHHHHHHHHHHTTCEEEEEECCTTTHHHHHHTTCCSEECSSCBCCHH
T ss_pred hCCeEEEEEC-CCCCCeeEE----CCCCCEEeehHHHHHHHHHHHCCceEEEEeCHHHHHHHHHCCCcCEEEeCCcCCHH
Confidence 5689999997 456777764 44677999999999999999999888777665421 22222 2
Q ss_pred ccccccccccceecceEEEEEccCCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCCCC--CCcccchhhHHH
Q 041608 156 SSLYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQ--GSRAHQFGMIFW 233 (448)
Q Consensus 156 R~~~vdFS~p~~~~~~~ilv~~~~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~~~--~~~~~~~~~~~w 233 (448)
|++.++||.||+..+.+++++++..... .+..++. |
T Consensus 88 r~~~~~fs~p~~~~~~~~~~~~~~~~~i-------------------------------~~~~dL~~~g----------- 125 (239)
T 3kbr_A 88 RQRQAYFSIPYLRDGKTPITLCSEEARF-------------------------------QTLEQIDQPG----------- 125 (239)
T ss_dssp HHTTCEECSCSEEECEEEEEEGGGGGGG-------------------------------SSHHHHSSTT-----------
T ss_pred HcCccccchHHhccCcEEEEECCccccc-------------------------------CCHHHhcCCC-----------
Confidence 8999999999999999999998432111 0224455 5
Q ss_pred HHHHHhhhcccccccccccchhhhhhhhhhhcccceeeecCCcHHhhhhcCCCCcccccccCCHHHHHHHhccCccCCce
Q 041608 234 YSFSTLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLNFKDSRLKKYNSTKEYANALSKESKNGGI 313 (448)
Q Consensus 234 ~~~~~l~~q~~~~~~s~s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 313 (448)
+++|+..|+....++++. ++..++..+++..+++++|.+|+ +
T Consensus 126 ---------------------------------~~v~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~gr----v 167 (239)
T 3kbr_A 126 ---------------------------------VTAIVNPGGTNEKFARAN-LKKARILVHPDNVTIFQQIVDGK----A 167 (239)
T ss_dssp ---------------------------------CEEEECTTSHHHHHHHHH-CSSSEEEECCCTTTHHHHHHTTS----C
T ss_pred ---------------------------------cEEEEcCCCcHHHHHHHh-CCCCceEEeCCHHHHHHHHHcCC----c
Confidence 799999999999888743 44567788899999999996666 9
Q ss_pred EEEEcchhhHHHHHHcCCCceEEeC--CCccCCCCCeeEEEecCCc-cHHHHHHHHHhHhhcCchhHHHHHhccc
Q 041608 314 SAIIDEMPYIKAFLAKYSAHYTLTA--PKNTNSTNGFGFVFQKGSS-LVHDISKAIARLREEGTLTKIENEWFID 385 (448)
Q Consensus 314 ~a~i~~~~~~~y~~~~~c~~l~~v~--~~~~~~~~~~~~a~~k~sp-l~~~in~~il~l~e~G~l~~l~~kw~~~ 385 (448)
||++.+...+.++++++. ++.++. .. +...+++++++| ++ +++.||++|.+|.++|.++++.+||++.
T Consensus 168 Da~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~k-~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~ 238 (239)
T 3kbr_A 168 DLMMTDAIEARLQSRLHP-ELCAVHPQQP--FDFAEKAYLLPR-DEAFKRYVDQWLHIAEQSGLLRQRMEHWLEY 238 (239)
T ss_dssp SEEEEEHHHHHHHHHHCT-TEEECCCC-C--CCCEEECCEECS-CHHHHHHHHHHHHHHHHHTHHHHHHHHHC--
T ss_pred CEEEEchHHHHHHHHhCC-CcEEecCCCC--ccccceEEEEcC-CHHHHHHHHHHHHHHHHCCcHHHHHHHHhcc
Confidence 999999999999999876 466665 33 677889999999 66 9999999999999999999999999964
No 20
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.80 E-value=5.5e-19 Score=161.15 Aligned_cols=203 Identities=16% Similarity=0.330 Sum_probs=165.0
Q ss_pred CCCeEEEEeccCCcccceecccCCCCCeeEEEehHHHHHHHHHHCCCcccEEEEecCC-----CCCCcC----C------
Q 041608 91 KINKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDSLTFEVPYEFIPFED-----ASGRMA----G------ 155 (448)
Q Consensus 91 ~~~~l~V~~~~~p~~p~~~~~~d~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~-----~~g~~~----g------ 155 (448)
..++|+|++. +.++||.+. +.++++.|+++|+++++++++|++++++..++.. ..|..+ +
T Consensus 4 ~a~~l~v~~~-~~~~P~~~~----~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~ 78 (229)
T 2y7i_A 4 SARTLHFGTS-ATYAPYEFV----DADNKIVGFDIDVANAVCKEMQAECSFTNQSFDSLIPSLRFKKFDAVIAGMDMTPK 78 (229)
T ss_dssp SCCEEEEEEC-CCBTTTBEE----CTTSCEESHHHHHHHHHHHHTTCEEEEEECCGGGHHHHHHTTSCSEECSSCBCCHH
T ss_pred cCCcEEEEeC-CCcCCceEE----CCCCCCcceeHHHHHHHHHHhCCeEEEEEcCHHHHHHHHhCCCceEEEecCccCHH
Confidence 4589999997 457777764 3456799999999999999999988877766542 122222 1
Q ss_pred ccccccccccceec-ceEEEEEccCCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcccchhhHHHH
Q 041608 156 SSLYVDFTLPYTEM-GIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQGSRAHQFGMIFWY 234 (448)
Q Consensus 156 R~~~vdFS~p~~~~-~~~ilv~~~~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~w~ 234 (448)
|.+.++||.||+.. ..+++++++.. . +..++.|
T Consensus 79 r~~~~~~s~p~~~~~~~~~~~~~~~~-~---------------------------------~~~dL~g------------ 112 (229)
T 2y7i_A 79 REQQVSFSQPYYEGLSAVVVTRKGAY-H---------------------------------TFADLKG------------ 112 (229)
T ss_dssp HHTTSEECSCSBCCCCEEEEEETTSC-C---------------------------------STGGGTT------------
T ss_pred HhcceeeccccccCCcEEEEEeCCCC-C---------------------------------CHHHHCC------------
Confidence 88899999999999 99999998541 1 4567888
Q ss_pred HHHHhhhcccccccccccchhhhhhhhhhhcccceeeecCCcHHhhhhcCCCCcccccccCCHHHHHHHhccCccCCceE
Q 041608 235 SFSTLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLNFKDSRLKKYNSTKEYANALSKESKNGGIS 314 (448)
Q Consensus 235 ~~~~l~~q~~~~~~s~s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 314 (448)
+++|+..|+....++++. .+..++..+.+..+.+++|.+|+ +|
T Consensus 113 --------------------------------~~v~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~gr----vD 155 (229)
T 2y7i_A 113 --------------------------------KKVGLENGTTHQRYLQDK-QQAITPVAYDSYLNAFTDLKNNR----LE 155 (229)
T ss_dssp --------------------------------CEEEEETTSHHHHHHHHH-CTTSEEEEESCHHHHHHHHHTTS----CS
T ss_pred --------------------------------CEEEEecCCcHHHHHHHh-CCCCeEEecCCHHHHHHHHHcCC----cC
Confidence 899999999998888643 34456778899999999996666 99
Q ss_pred EEEcchhhHHHHHHcCCCceEEeCCCccCC-----CCCeeEEEecCCc-cHHHHHHHHHhHhhcCchhHHHHHhcc
Q 041608 315 AIIDEMPYIKAFLAKYSAHYTLTAPKNTNS-----TNGFGFVFQKGSS-LVHDISKAIARLREEGTLTKIENEWFI 384 (448)
Q Consensus 315 a~i~~~~~~~y~~~~~c~~l~~v~~~~~~~-----~~~~~~a~~k~sp-l~~~in~~il~l~e~G~l~~l~~kw~~ 384 (448)
+++.+...+.+++++.. ++++++.. +. ..+++++++|++| +++.+|++|.+|.++|.++++.+||++
T Consensus 156 a~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 228 (229)
T 2y7i_A 156 GVFGDVAAIGKWLKNNP-DYAIMDER--ASDPDYYGKGLGIAVRKDNDALLQEINAALDKVKASPEYAQMQEKWFT 228 (229)
T ss_dssp EEEEEHHHHHHHHTTCT-TEEECSCC--BCCTTTSCCCBCCEECTTCHHHHHHHHHHHHHHHTSHHHHHHHHHHHC
T ss_pred EEEechHHHHHHHHhCC-CeEEeccc--cccccccccceEEEEeCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 99999999999998877 68887755 42 2488999999998 999999999999999999999999986
No 21
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.80 E-value=6.1e-20 Score=172.53 Aligned_cols=214 Identities=14% Similarity=0.209 Sum_probs=168.4
Q ss_pred CCCCCCC-CCCeEEEEeccCCcccceecccCCCCCeeEEEehHHHHHHHHHHCCCcccEEEEe-cCC-----CCCCcCC-
Q 041608 84 AIPEGGG-KINKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDSLTFEVPYEFIP-FED-----ASGRMAG- 155 (448)
Q Consensus 84 ~~p~~~~-~~~~l~V~~~~~p~~p~~~~~~d~~~~~~~~G~~idll~~la~~l~f~~~~~~~~-~~~-----~~g~~~g- 155 (448)
..+..|. +.++|+||+. +.++||.+. +.++++.|+++||++++++++|++++++..+ +.. .+|..+.
T Consensus 22 ~~e~~~i~~~~~l~v~~~-~~~~P~~~~----~~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~~l~~G~~D~~ 96 (267)
T 3mpk_A 22 AREQQWMADHPVVKVAVL-NLFAPFTLF----RTDEQFGGISAAVLQLLQLRTGLDFEIIGVDTVEELIAKLRSGEADMA 96 (267)
T ss_dssp HHHHHHHHHCSEEEEEEE-TEETTTEEC----CTTCCCBSHHHHHHHHHHHHHCCEEEEEEESSHHHHHHHHHHTSCSEE
T ss_pred HHHHHHHHhCCcEEEEeC-CCCCCeEEE----CCCCcEeeeHHHHHHHHHHHHCCeEEEEecCCHHHHHHHHHCCCccEE
Confidence 3344455 7789999997 557788774 4557799999999999999999987776443 321 1222221
Q ss_pred --------ccccccccccceecceEEEEEccCCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcccc
Q 041608 156 --------SSLYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQGSRAHQ 227 (448)
Q Consensus 156 --------R~~~vdFS~p~~~~~~~ilv~~~~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~~~~~~~~~ 227 (448)
|.+.++||.||+..+.+++++++..... +..++.|
T Consensus 97 ~~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~~i~--------------------------------~~~dL~g----- 139 (267)
T 3mpk_A 97 GALFVNSARESFLSFSRPYVRNGMVIVTRQDPDAPV--------------------------------DADHLDG----- 139 (267)
T ss_dssp EEEECCGGGTTTEEECSCSEEECEEEEEESSTTSCS--------------------------------SGGGCTT-----
T ss_pred ecccCChhhhcceEechhhccCceEEEEECCCCCCC--------------------------------CHHHHCC-----
Confidence 9999999999999999999998422111 4567788
Q ss_pred hhhHHHHHHHHhhhcccccccccccchhhhhhhhhhhcccceeeecCCcHHhhhhcCCCCcccccccCCHHHHHHHhccC
Q 041608 228 FGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLNFKDSRLKKYNSTKEYANALSKE 307 (448)
Q Consensus 228 ~~~~~w~~~~~l~~q~~~~~~s~s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 307 (448)
+++|+..|+....++++. ++..+++.+++.++++++|.+|
T Consensus 140 ---------------------------------------~~i~v~~g~~~~~~l~~~-~~~~~~~~~~~~~~~l~~L~~G 179 (267)
T 3mpk_A 140 ---------------------------------------RTVALVRNSAAIPLLQRR-YPQAKVVTADNPSEAMLMVANG 179 (267)
T ss_dssp ---------------------------------------CEEEEETTCTHHHHHHHH-CTTSEEEEESSHHHHHHHHHHT
T ss_pred ---------------------------------------CEEEEeCCchhHHHHHHh-CCCcEEEEeCCHHHHHHHHHcC
Confidence 999999999999988743 3456778899999999999666
Q ss_pred ccCCceEEEEcchhhHHHHHHcC-CCceEEeCCCccCCCCCeeEEEecCCc-cHHHHHHHHHhHhhcCchhHHHHHhccc
Q 041608 308 SKNGGISAIIDEMPYIKAFLAKY-SAHYTLTAPKNTNSTNGFGFVFQKGSS-LVHDISKAIARLREEGTLTKIENEWFID 385 (448)
Q Consensus 308 ~~~~~~~a~i~~~~~~~y~~~~~-c~~l~~v~~~~~~~~~~~~~a~~k~sp-l~~~in~~il~l~e~G~l~~l~~kw~~~ 385 (448)
+ +||++.+...+.|++++. .+++++++... ....+++++++|++| +.+.||++|.+|.++| ++++.+||++.
T Consensus 180 r----vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~~-~~~i~~kw~~~ 253 (267)
T 3mpk_A 180 Q----ADAVVQTQISASYYVNRYFAGKLRIASALD-LPPAEIALATTRGQTELMSILNKALYSISNDE-LASIISRWRGS 253 (267)
T ss_dssp S----CSEEEEEHHHHHHHHHHHCTTTEEEEEECS-SCCEEEEEEEETTCHHHHHHHHHHHHTSCHHH-HHHHHHTTC--
T ss_pred C----CCEEEecHHHHHHHHHhcCCCceEEEeccC-CCceeEEEEEcCCCHHHHHHHHHHHHhCCHHH-HHHHHHhhccC
Confidence 6 999999999999999874 43688776652 357889999999998 9999999999999996 99999999975
No 22
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.79 E-value=8.7e-19 Score=159.19 Aligned_cols=205 Identities=18% Similarity=0.335 Sum_probs=165.5
Q ss_pred CeEEEEeccCCcccceecccCCCCCeeEEEehHHHHHHHHHHCCCcccEEEEecCC-----CCCCcCC----------cc
Q 041608 93 NKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDSLTFEVPYEFIPFED-----ASGRMAG----------SS 157 (448)
Q Consensus 93 ~~l~V~~~~~p~~p~~~~~~d~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~-----~~g~~~g----------R~ 157 (448)
++|+|++. +.++||.+. + ++++.|+++|+++++++++|++++++..++.. ..|..+. |.
T Consensus 3 ~~l~v~~~-~~~~P~~~~----~-~g~~~G~~~dl~~~~~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~ 76 (226)
T 1wdn_A 3 KKLVVATD-TAFVPFEFK----Q-GDLYVGFDVDLWAAIAKELKLDYELKPMDFSGIIPALQTKNVDLALAGITITDERK 76 (226)
T ss_dssp -CEEEEEE-SSBTTTBEE----E-TTEEESHHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHTTSSSEEEEEEECCHHHH
T ss_pred ceEEEEEC-CCCCCeeEe----c-CCcEEEeeHHHHHHHHHHhCCEEEEEECCHHHHHHHHhCCCCCEEEEcCcCCHHHh
Confidence 68999998 567777764 2 36799999999999999999988888776542 1233221 88
Q ss_pred ccccccccceecceEEEEEccCCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcccchhhHHHHHHH
Q 041608 158 LYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQGSRAHQFGMIFWYSFS 237 (448)
Q Consensus 158 ~~vdFS~p~~~~~~~ilv~~~~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~w~~~~ 237 (448)
+.++||.||+....+++++++.. .. .+..++.|
T Consensus 77 ~~~~~~~p~~~~~~~~~~~~~~~-~i-------------------------------~~~~dL~g--------------- 109 (226)
T 1wdn_A 77 KAIDFSDGYYKSGLLVMVKANNN-DV-------------------------------KSVKDLDG--------------- 109 (226)
T ss_dssp TTSEECSCCEEEEEEEEEETTCC-SC-------------------------------SSSTTTTT---------------
T ss_pred CccccccchhcCceEEEEeCCCC-CC-------------------------------CCHHHhCC---------------
Confidence 89999999999999999998432 11 14577888
Q ss_pred HhhhcccccccccccchhhhhhhhhhhcccceeeecCCcHHhhhhcCCCCcccccccCCHHHHHHHhccCccCCceEEEE
Q 041608 238 TLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLNFKDSRLKKYNSTKEYANALSKESKNGGISAII 317 (448)
Q Consensus 238 ~l~~q~~~~~~s~s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i 317 (448)
+++|+..|+....++++. ++..++..+.+..+.+++|.+|+ +|+++
T Consensus 110 -----------------------------~~i~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~g~----vDa~~ 155 (226)
T 1wdn_A 110 -----------------------------KVVAVKSGTGSVDYAKAN-IKTKDLRQFPNIDNAYMELGTNR----ADAVL 155 (226)
T ss_dssp -----------------------------CEEEEETTSHHHHHHHHH-CCCSEEEEESSHHHHHHHHHTTS----CSEEE
T ss_pred -----------------------------CEEEEEcCCcHHHHHHHh-CCCceEEEeCCHHHHHHHHHcCC----cCEEE
Confidence 899999999998888654 23446677899999999996665 99999
Q ss_pred cchhhHHHHHHcCC-CceEEeCCCccCCCCCeeEEEecCCc-cHHHHHHHHHhHhhcCchhHHHHHhcccC
Q 041608 318 DEMPYIKAFLAKYS-AHYTLTAPKNTNSTNGFGFVFQKGSS-LVHDISKAIARLREEGTLTKIENEWFIDR 386 (448)
Q Consensus 318 ~~~~~~~y~~~~~c-~~l~~v~~~~~~~~~~~~~a~~k~sp-l~~~in~~il~l~e~G~l~~l~~kw~~~~ 386 (448)
.+...+.+++++.. ..+++++.. +....++++++|++| +.+.+|++|.++.++|.++++.+||+...
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~k~~~~l~~~~~~~l~~l~~~g~~~~i~~k~~~~~ 224 (226)
T 1wdn_A 156 HDTPNILYFIKTAGNGQFKAVGDS--LEAQQYGIAFPKGSDELRDKVNGALKTLRENGTYNEIYKKWFGTE 224 (226)
T ss_dssp EEHHHHHHHHHTTTTTTEEEEEEE--EEEEEEEEEECTTCHHHHHHHHHHHHHHHHTSHHHHHHHHHHSSC
T ss_pred eCcHHHHHHHHhCCCCceEEecCC--cccCceEEEEeCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCC
Confidence 99999999988762 368877766 667889999999996 99999999999999999999999999864
No 23
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.79 E-value=5.7e-19 Score=162.89 Aligned_cols=207 Identities=14% Similarity=0.188 Sum_probs=161.7
Q ss_pred CCCeEEEEeccCCcccceecccCCCCCeeEEEehHHHHHHHHHHCC-CcccEEEEecCC-----CCCCcC----C-----
Q 041608 91 KINKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDSLT-FEVPYEFIPFED-----ASGRMA----G----- 155 (448)
Q Consensus 91 ~~~~l~V~~~~~p~~p~~~~~~d~~~~~~~~G~~idll~~la~~l~-f~~~~~~~~~~~-----~~g~~~----g----- 155 (448)
..++|+|++. +.++||.+ ..++++.|+++||++++++++| ++++++..++.. .+|..+ +
T Consensus 6 ~~~~l~v~~~-~~~~P~~~-----~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~ 79 (246)
T 4eq9_A 6 SKKEIIVATN-GSPRPFIY-----EENGELTGYEIEVVRAIFKDSDKYDVKFEKTEWSGVFAGLDADRYNMAVNNLSYTK 79 (246)
T ss_dssp -CEEEEEEEC-CCSTTTSE-----EETTEEESHHHHHHHHHHTTCSSEEEEEEECCHHHHHHHHHTTSCSEECSSCCCCH
T ss_pred CCCEEEEEeC-CCcCCeEE-----cCCCCCcccHHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhCCCcCEEecccccCh
Confidence 3478999998 45677776 2456799999999999999999 887777665531 122221 1
Q ss_pred -ccccccccccceecceEEEEEc-cCCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcccchhhHHH
Q 041608 156 -SSLYVDFTLPYTEMGIGMIVPI-DQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQGSRAHQFGMIFW 233 (448)
Q Consensus 156 -R~~~vdFS~p~~~~~~~ilv~~-~~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~w 233 (448)
|.+.++||.||+..+.++++++ +.... +..++.|
T Consensus 80 ~r~~~~~~s~p~~~~~~~~~~~~~~~~i~---------------------------------~~~dL~g----------- 115 (246)
T 4eq9_A 80 ERAEKYLYAAPIAQNPNVLVVKKDDSSIK---------------------------------SLDDIGG----------- 115 (246)
T ss_dssp HHHHHEEECCCCEECCEEEEEETTCCSCS---------------------------------SGGGCTT-----------
T ss_pred hhhhceeeccceecCceEEEEECCCCCCC---------------------------------CHHHhCC-----------
Confidence 8899999999999999999998 43221 4567788
Q ss_pred HHHHHhhhcccccccccccchhhhhhhhhhhcccceeeecCCcHHhhhhcC--CCCc--cccc-ccCCHHHHHHHhccCc
Q 041608 234 YSFSTLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNL--NFKD--SRLK-KYNSTKEYANALSKES 308 (448)
Q Consensus 234 ~~~~~l~~q~~~~~~s~s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~~--~~~~--~~~~-~~~~~~~~~~~l~~~~ 308 (448)
+++|+..|+....++... ..+. ..+. ...+.++++++|.+|+
T Consensus 116 ---------------------------------~~i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g~ 162 (246)
T 4eq9_A 116 ---------------------------------KSTEVVQATTSAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSDGQ 162 (246)
T ss_dssp ---------------------------------CEEEECTTCHHHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHTTS
T ss_pred ---------------------------------CEEEEecCccHHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHcCC
Confidence 899999999988888641 1222 2233 2358899999996666
Q ss_pred cCCceEEEEcchhhHHHHHHcC-CCceEEeCCCccCCCCC-eeEEEecCCc-cHHHHHHHHHhHhhcCchhHHHHHhccc
Q 041608 309 KNGGISAIIDEMPYIKAFLAKY-SAHYTLTAPKNTNSTNG-FGFVFQKGSS-LVHDISKAIARLREEGTLTKIENEWFID 385 (448)
Q Consensus 309 ~~~~~~a~i~~~~~~~y~~~~~-c~~l~~v~~~~~~~~~~-~~~a~~k~sp-l~~~in~~il~l~e~G~l~~l~~kw~~~ 385 (448)
+|+++.+...+.+++++. ..++++++.. ..... ++++++|++| +++.||++|.+|.++|.+++|.+||++.
T Consensus 163 ----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~ 236 (246)
T 4eq9_A 163 ----FDYKIFDKIGVETVIKNQGLDNLKVIELP--SDQQPYVYPLLAQGQDELKSFVDKRIKELYKDGTLEKLSKQFFGD 236 (246)
T ss_dssp ----SSEEEEEHHHHHHHHHHHTCTTEEEEECC--CSSCCEECCEEETTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred ----ceEEEecHHHHHHHHHhCCCCCceEecCc--CCCCCcEEEEEcCCCHHHHHHHHHHHHHHHhCCcHHHHHHHhcCC
Confidence 999999999999999876 3468888776 55555 8999999998 9999999999999999999999999986
Q ss_pred C
Q 041608 386 R 386 (448)
Q Consensus 386 ~ 386 (448)
.
T Consensus 237 ~ 237 (246)
T 4eq9_A 237 T 237 (246)
T ss_dssp C
T ss_pred C
Confidence 3
No 24
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.79 E-value=6.4e-19 Score=161.03 Aligned_cols=207 Identities=17% Similarity=0.280 Sum_probs=162.3
Q ss_pred CCeEEEEeccCCcccceecccCCCCCeeEEEehHHHHHHHHHHCCCcccEEEE-ecCC-----CCCCcCC----------
Q 041608 92 INKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDSLTFEVPYEFI-PFED-----ASGRMAG---------- 155 (448)
Q Consensus 92 ~~~l~V~~~~~p~~p~~~~~~d~~~~~~~~G~~idll~~la~~l~f~~~~~~~-~~~~-----~~g~~~g---------- 155 (448)
+++|+||+.. ++||.+.+ ++.++++.|+++|+++++++++|++++++.. ++.. ..|..+.
T Consensus 3 ~~~l~v~~~~--~~P~~~~~--~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~ 78 (233)
T 1ii5_A 3 AMALKVGVVG--NPPFVFYG--EGKNAAFTGISLDVWRAVAESQKWNSEYVRQNSISAGITAVAEGELDILIGPISVTPE 78 (233)
T ss_dssp SCCEEEEECC--CTTTCEEC-------CEESHHHHHHHHHHHHHTCCEEEEECSCHHHHHHHHHTTSCSEEEEEEECCHH
T ss_pred CceEEEEecC--CCCeEEEe--cCCCCCEEEEeHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHCCCcCEEEeeeecCcc
Confidence 4789999964 77777631 1134669999999999999999998777766 4431 1233221
Q ss_pred cc--ccccccccceecceEEEEEccCCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcccchhhHHH
Q 041608 156 SS--LYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQGSRAHQFGMIFW 233 (448)
Q Consensus 156 R~--~~vdFS~p~~~~~~~ilv~~~~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~w 233 (448)
|. +.++||.||+....+++++++..... .+..++.|
T Consensus 79 r~~~~~~~~s~p~~~~~~~~~~~~~~~~~i-------------------------------~~~~dL~g----------- 116 (233)
T 1ii5_A 79 RAAIEGITFTQPYFSSGIGLLIPGTATPLF-------------------------------RSVGDLKN----------- 116 (233)
T ss_dssp HHTSTTEEECCCCEEEEEEEEEEGGGTTTC-------------------------------SSGGGGTT-----------
T ss_pred ccccceeEEccceeecCeEEEEECCCCCCC-------------------------------CCHHHhCC-----------
Confidence 87 89999999999999999998432111 14467778
Q ss_pred HHHHHhhhcccccccccccchhhhhhhhhhhcccceeeecCCcHHhhhhcCCCCcccccccCCHHHHHHHhccCccCCce
Q 041608 234 YSFSTLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLNFKDSRLKKYNSTKEYANALSKESKNGGI 313 (448)
Q Consensus 234 ~~~~~l~~q~~~~~~s~s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 313 (448)
+++|+..|+....+++..+ .++..+.+..+++++|.+|+ +
T Consensus 117 ---------------------------------~~v~~~~g~~~~~~l~~~~---~~~~~~~~~~~~~~~l~~g~----v 156 (233)
T 1ii5_A 117 ---------------------------------KEVAVVRDTTAVDWANFYQ---ADVRETNNLTAAITLLQKKQ----V 156 (233)
T ss_dssp ---------------------------------CEEEEETTSHHHHHHHHTT---CEEEEESSHHHHHHHHHTTS----C
T ss_pred ---------------------------------CeEEEECCccHHHHHHHcC---CCeEEcCCHHHHHHHHHcCC----c
Confidence 8999999999988887542 36677899999999996665 9
Q ss_pred EEEEcchhhHHHHHHcCC-CceEEeCCCccCCCCCeeEEEecCCccHHHHHHHHHhHhhcCchhHHHHHhcccC
Q 041608 314 SAIIDEMPYIKAFLAKYS-AHYTLTAPKNTNSTNGFGFVFQKGSSLVHDISKAIARLREEGTLTKIENEWFIDR 386 (448)
Q Consensus 314 ~a~i~~~~~~~y~~~~~c-~~l~~v~~~~~~~~~~~~~a~~k~spl~~~in~~il~l~e~G~l~~l~~kw~~~~ 386 (448)
||++.+...+.|++++.. ..+.+++.. +....++++++|++++.+.+|++|.+|.++|.++++.+||+...
T Consensus 157 Da~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~~~l~~~~~~~l~~l~~~g~~~~i~~k~~~~~ 228 (233)
T 1ii5_A 157 EAVMFDRPALIYYTRQNPNLNLEVTEIR--VSLEPYGFVLKENSPLQKTINVEMLNLLYSRVIAEFTERWLGPG 228 (233)
T ss_dssp SEEEEEHHHHHHHHHHCGGGCEEECSCC--SEEEEEEEEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHC--
T ss_pred cEEEeCHHHHHHHHHhCCCCcEEEeCcc--ccccceEEEEcCCchHHHHHHHHHHHHHhCCcHHHHHHHHcCCC
Confidence 999999999999988762 268888777 77788999999999999999999999999999999999999864
No 25
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.78 E-value=6.1e-19 Score=162.07 Aligned_cols=208 Identities=16% Similarity=0.250 Sum_probs=160.6
Q ss_pred CCeEEEEeccCCcccceecccCCCCCeeEEEehHHHHHHHHHHCCCcccEEEEecCC-----CCCCcC----C------c
Q 041608 92 INKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDSLTFEVPYEFIPFED-----ASGRMA----G------S 156 (448)
Q Consensus 92 ~~~l~V~~~~~p~~p~~~~~~d~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~-----~~g~~~----g------R 156 (448)
.++|+|++. +.++||.+. +.++++.|+++|+++++++++|++++++..++.. ..|..+ + |
T Consensus 3 ~~~l~v~~~-~~~~P~~~~----~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r 77 (239)
T 1lst_A 3 PQTVRIGTD-TTYAPFSSK----DAKGEFIGFDIDLGNEMCKRMQVKCTWVASDFDALIPSLKAKKIDAIISSLSITDKR 77 (239)
T ss_dssp CSEEEEEEC-SCBTTTBEE----CTTCCEESHHHHHHHHHHHHHTCEEEEEECCGGGHHHHHHTTSCSEECSSCBCCHHH
T ss_pred cceEEEEEC-CCcCCeeEE----CCCCCEeeEHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHhCCCCCEEEECcCcCHHH
Confidence 478999996 457777764 4456799999999999999999988877766542 122222 1 8
Q ss_pred cccccccccceecceEEEEEccCCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcccchhhHHHHHH
Q 041608 157 SLYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQGSRAHQFGMIFWYSF 236 (448)
Q Consensus 157 ~~~vdFS~p~~~~~~~ilv~~~~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~w~~~ 236 (448)
.+.++||.||+..+.+++++++..... +..++.|
T Consensus 78 ~~~~~~s~p~~~~~~~l~~~~~~~~~~--------------------------------~~~dL~g-------------- 111 (239)
T 1lst_A 78 QQEIAFSDKLYAADSRLIAAKGSPIQP--------------------------------TLESLKG-------------- 111 (239)
T ss_dssp HHHCEECSCSBCCCEEEEEETTCCCCS--------------------------------SHHHHTT--------------
T ss_pred hhceeecccceeCceEEEEeCCCCCCC--------------------------------CHHHhCC--------------
Confidence 889999999999999999998432110 2355667
Q ss_pred HHhhhcccccccccccchhhhhhhhhhhcccceeeecCCcHHhhhhcCC-CCcccccccCCHHHHHHHhccCccCCceEE
Q 041608 237 STLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLN-FKDSRLKKYNSTKEYANALSKESKNGGISA 315 (448)
Q Consensus 237 ~~l~~q~~~~~~s~s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a 315 (448)
+++|+..|+....++++.. .+..++..+.+..+.+++|.+|+ +|+
T Consensus 112 ------------------------------~~v~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~G~----vDa 157 (239)
T 1lst_A 112 ------------------------------KHVGVLQGSTQEAYANDNWRTKGVDVVAYANQDLIYSDLTAGR----LDA 157 (239)
T ss_dssp ------------------------------CEEEEETTSHHHHHHHHHTGGGTCEEEEESSHHHHHHHHHTTS----CSE
T ss_pred ------------------------------CEEEEEcCccHHHHHHHhcccCCCeEEEcCCHHHHHHHHHcCC----CCE
Confidence 8999999999888886432 12346677899999999996666 999
Q ss_pred EEcchhhHHH-HHHcC-CCceEEeCCCccCCC-----CCeeEEEecCCc-cHHHHHHHHHhHhhcCchhHHHHHhcccC
Q 041608 316 IIDEMPYIKA-FLAKY-SAHYTLTAPKNTNST-----NGFGFVFQKGSS-LVHDISKAIARLREEGTLTKIENEWFIDR 386 (448)
Q Consensus 316 ~i~~~~~~~y-~~~~~-c~~l~~v~~~~~~~~-----~~~~~a~~k~sp-l~~~in~~il~l~e~G~l~~l~~kw~~~~ 386 (448)
++.+...+.+ ++++. ..++.+++.. +.. .+++++++|++| +.+.+|++|.+|.++|.++++.+||+...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~k~~~~l~~~~~~~l~~l~~~G~~~~i~~k~~~~~ 234 (239)
T 1lst_A 158 ALQDEVAASEGFLKQPAGKEYAFAGPS--VKDKKYFGDGTGVGLRKDDTELKAAFDKALTELRQDGTYDKMAKKYFDFN 234 (239)
T ss_dssp EEEEHHHHHHHTTTSGGGTTEEECSSC--BCCHHHHCSSBCCEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHTTCSSC
T ss_pred EEeCcHHHHHHHHhccCCCceEEeccc--cccccccCcceEEEEeCCCHHHHHHHHHHHHHHHHCccHHHHHHHHcCCC
Confidence 9999988764 45443 2267777765 543 378999999998 99999999999999999999999999863
No 26
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.78 E-value=4.5e-19 Score=166.96 Aligned_cols=207 Identities=16% Similarity=0.271 Sum_probs=160.1
Q ss_pred CCCeEEEEeccCCcccceecccCCCCCeeEEEehHHHHHHHHHHCCCcccEEEEecCCC-----CCCcC----C------
Q 041608 91 KINKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDSLTFEVPYEFIPFEDA-----SGRMA----G------ 155 (448)
Q Consensus 91 ~~~~l~V~~~~~p~~p~~~~~~d~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~-----~g~~~----g------ 155 (448)
+.++|+|++. +.++||.+...+ ++.+++.|+++|+++++++++|++++++..++... .|..+ +
T Consensus 19 ~~~~l~v~~~-~~~pP~~~~~~~-~~~g~~~G~~~dl~~~i~~~~g~~v~~~~~~~~~~~~~l~~G~~D~~~~~~~~t~~ 96 (271)
T 2iee_A 19 DKGKIVVATS-GTLYPTSYHDTD-SGSDKLTGYEVEVVREAAKRLGLKVEFKEMGIDGMLTAVNSGQVDAAANDIDVTKD 96 (271)
T ss_dssp HHTEEEEEEC-SCBTTTBEEETT-TTCCEEECHHHHHHHHHHHHTTCEEEEEECCSTTHHHHHHHTSSSEECSSCBCCHH
T ss_pred cCCeEEEEEC-CCCCCeeEeCCC-CCCCCceeeHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHCCCcCEEEeCCcCChh
Confidence 5689999997 457777764111 12277999999999999999999888777665421 12211 1
Q ss_pred ccccccccccceecceEEEEEccCCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcccchhhHHHHH
Q 041608 156 SSLYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQGSRAHQFGMIFWYS 235 (448)
Q Consensus 156 R~~~vdFS~p~~~~~~~ilv~~~~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~w~~ 235 (448)
|.+.++||.||+..+.+++++++....+ .+..++.|
T Consensus 97 r~~~~~fs~p~~~~~~~l~~~~~~~~~i-------------------------------~~~~dL~g------------- 132 (271)
T 2iee_A 97 REEKFAFSTPYKYSYGTAIVRKDDLSGI-------------------------------KTLKDLKG------------- 132 (271)
T ss_dssp HHTTEEECCCSEEEEEEEEECTTTGGGC-------------------------------SSGGGGTT-------------
T ss_pred hccceEEeecceeCCeEEEEECCCCCCC-------------------------------CCHHHhCC-------------
Confidence 8889999999999999999988432111 14467788
Q ss_pred HHHhhhcccccccccccchhhhhhhhhhhcccceeeecCCcHHhhhhcCCCCcccccccCCHHHH--HHHhccCccCCce
Q 041608 236 FSTLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLNFKDSRLKKYNSTKEY--ANALSKESKNGGI 313 (448)
Q Consensus 236 ~~~l~~q~~~~~~s~s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~ 313 (448)
++||+..|+....++++.+. +++.+.+..+. +++|.+|+ +
T Consensus 133 -------------------------------~~i~v~~g~~~~~~l~~~~~---~~~~~~~~~~~~l~~~L~~Gr----v 174 (271)
T 2iee_A 133 -------------------------------KKAAGAATTVYMEVARKYGA---KEVIYDNATNEQYLKDVANGR----T 174 (271)
T ss_dssp -------------------------------CEEESCTTSHHHHHHHHTTC---EEEECSSCCHHHHHHHHHHTS----S
T ss_pred -------------------------------CEEEEeCCccHHHHHHHcCC---ceEEeCChhhHHHHHHHHcCC----c
Confidence 89999999999988875543 66778888888 99996666 9
Q ss_pred EEEEcchhhHHHHHH-cC-CCceEEe-CCCccCCCCCeeEEEecCCc-cHHHHHHHHHhHhhcCchhHHHHHhcc
Q 041608 314 SAIIDEMPYIKAFLA-KY-SAHYTLT-APKNTNSTNGFGFVFQKGSS-LVHDISKAIARLREEGTLTKIENEWFI 384 (448)
Q Consensus 314 ~a~i~~~~~~~y~~~-~~-c~~l~~v-~~~~~~~~~~~~~a~~k~sp-l~~~in~~il~l~e~G~l~~l~~kw~~ 384 (448)
| ++.+...+.+++. +. ..+++++ +.. +...+++++++|++| +++.||++|.+|.++|.+++|.+||+.
T Consensus 175 D-~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~~~~l~~~ln~al~~l~~~G~~~~i~~k~~~ 246 (271)
T 2iee_A 175 D-VILNDYYLQTLALAAFPDLNITIHPDIK--YMPNKQALVMKKSNAALQKKMNEALKEMSKDGSLTKLSKQFFN 246 (271)
T ss_dssp C-EEEEEHHHHHHHHHHCTTSSCEECSSCC--EEEEEECCEEETTCHHHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred c-EEeccHHHHHHHHHhCCCCceEEecCCC--cccceEEEEEcCCCHHHHHHHHHHHHHHHHCCCHHHHHHHhCC
Confidence 9 7777666666665 44 3367777 555 677889999999998 999999999999999999999999998
No 27
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.77 E-value=1.2e-18 Score=162.82 Aligned_cols=209 Identities=17% Similarity=0.235 Sum_probs=164.7
Q ss_pred CCCeEEEEeccCCcccceecccCCCCCeeEEEehHHHHHHHHHHCCCcccEEEEecCC-----CCCCcCC----------
Q 041608 91 KINKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDSLTFEVPYEFIPFED-----ASGRMAG---------- 155 (448)
Q Consensus 91 ~~~~l~V~~~~~p~~p~~~~~~d~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~-----~~g~~~g---------- 155 (448)
+.++|+|++. +.|+||.+. +.++++.|+++|+++++++++|++++++..++.. ..|..+.
T Consensus 27 ~~~~l~v~~~-~~~~P~~~~----~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~ 101 (259)
T 4dz1_A 27 EGRTLNVAVS-PASPPMLFK----SADGKLQGIDLELFSSYCQSRHCKLNITEYAWDGMLGAVASGQADVAFSGISITDK 101 (259)
T ss_dssp TTCEEEEEEC-CCBTTTBEE----CTTCCEESHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHTSSSEEEEEEECCHH
T ss_pred cCCeEEEEEC-CCCCCeEEE----CCCCCEEEeHHHHHHHHHHHhCCeEEEEEcCHHHHHHHHhCCCCCEEEECCcCCHH
Confidence 4589999997 457777765 4467799999999999999999987776665431 1222221
Q ss_pred ccccccccccceecceEEEEEccCCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcccchhhHHHHH
Q 041608 156 SSLYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQGSRAHQFGMIFWYS 235 (448)
Q Consensus 156 R~~~vdFS~p~~~~~~~ilv~~~~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~w~~ 235 (448)
|++.++||.||+..+..++++++..... .+..++.|
T Consensus 102 r~~~~~fs~p~~~~~~~~~~~~~~~~~i-------------------------------~~~~dL~g------------- 137 (259)
T 4dz1_A 102 RKKVIDFSEPYYINSFYLVSMANHKITL-------------------------------NNLNELNK------------- 137 (259)
T ss_dssp HHTTEEECCCSEEEEEEEEEETTSCCCC-------------------------------CSGGGGGG-------------
T ss_pred HhhccccccchhhCceEEEEEcCCCCCC-------------------------------CCHHHhCC-------------
Confidence 8999999999999999999987432221 14467777
Q ss_pred HHHhhhcccccccccccchhhhhhhhhhhcccceeeecCCcHHhhhhcCC----CCc-ccccccCCHHHHHHHhccCccC
Q 041608 236 FSTLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLN----FKD-SRLKKYNSTKEYANALSKESKN 310 (448)
Q Consensus 236 ~~~l~~q~~~~~~s~s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~~~----~~~-~~~~~~~~~~~~~~~l~~~~~~ 310 (448)
+++|+..|+....++++.. ++. .++..+.+.++++++|.+|+
T Consensus 138 -------------------------------~~v~v~~g~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~-- 184 (259)
T 4dz1_A 138 -------------------------------YSIGYPRGMAYSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKNGN-- 184 (259)
T ss_dssp -------------------------------SCEEEETTSTHHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHHTS--
T ss_pred -------------------------------CEEEEeCCcHHHHHHHHhcccccccccceeEecCCHHHHHHHHHcCC--
Confidence 8999999999988886432 111 56778899999999996666
Q ss_pred CceEEEEcchhhHHHHHHcCCCceEEeCCCccCCCCCeeEEEecCCccHHHHHHHHHhHhhcCchhHHHHHhcccC
Q 041608 311 GGISAIIDEMPYIKAFLAKYSAHYTLTAPKNTNSTNGFGFVFQKGSSLVHDISKAIARLREEGTLTKIENEWFIDR 386 (448)
Q Consensus 311 ~~~~a~i~~~~~~~y~~~~~c~~l~~v~~~~~~~~~~~~~a~~k~spl~~~in~~il~l~e~G~l~~l~~kw~~~~ 386 (448)
+||++.+...+.+++++...++...... ....+++++++|+++|++.||++|.+ ..++.++++.++|....
T Consensus 185 --vDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~~~l~~~ln~~l~~-~g~~~l~~~~~~~~~~~ 255 (259)
T 4dz1_A 185 --LDLAFIEEPVYFTFKNKKKMPIESRYVF--KNVDQLGIAFKKGSPVRDDFNLWLKE-QGPQKISGIVDSWMKHH 255 (259)
T ss_dssp --CSEEEEEHHHHHHHHHTSCCCEEEEEEE--EEEEEEEEEEETTCHHHHHHHHHHHH-HCHHHHHHHHHHHTCC-
T ss_pred --CCEEEecHHHHHHHhccCCCceEeeccc--CCCceEEEEEeCChHHHHHHHHHHHh-CCCeehHHHHHHHHhhc
Confidence 9999999999988887763367766665 56788999999999999999999999 88899999999999863
No 28
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.76 E-value=3.1e-18 Score=159.31 Aligned_cols=209 Identities=16% Similarity=0.179 Sum_probs=162.1
Q ss_pred CCCeEEEEeccCCcccceecccCCCCCeeEEEehHHHHHHHHHHCCCc-ccEEEEecCC-----CCCCcC----C-----
Q 041608 91 KINKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDSLTFE-VPYEFIPFED-----ASGRMA----G----- 155 (448)
Q Consensus 91 ~~~~l~V~~~~~p~~p~~~~~~d~~~~~~~~G~~idll~~la~~l~f~-~~~~~~~~~~-----~~g~~~----g----- 155 (448)
+.++|+|++.. ++||.+. +.++++.|+++|+++++++++|++ +++...++.. .+|..+ +
T Consensus 11 ~~~~l~v~~~~--~~P~~~~----~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~ 84 (257)
T 2q88_A 11 EQGFARIAIAN--EPPFTAV----GADGKVSGAAPDVAREIFKRLGVADVVASISEYGAMIPGLQAGRHDAITAGLFMKP 84 (257)
T ss_dssp HHTEEEEEECC--CTTTCEE----CTTCCEESHHHHHHHHHHHHTTCCEEEEEECCGGGHHHHHHTTSCSEECSCCBCCH
T ss_pred cCCeEEEEcCC--CCCeeEE----CCCCCcccccHHHHHHHHHHcCCCeeeEEeCCHHHHHHHHHCCCcCEEEecccCCH
Confidence 56899999964 6676664 345679999999999999999998 7777666542 122221 1
Q ss_pred -ccccccccccceecceEEEEEccCCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCCCC---CCcccchhhH
Q 041608 156 -SSLYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQ---GSRAHQFGMI 231 (448)
Q Consensus 156 -R~~~vdFS~p~~~~~~~ilv~~~~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~~~---~~~~~~~~~~ 231 (448)
|.+.++||.||+..+.+++++++....+ .+..++. |
T Consensus 85 ~r~~~~~~s~p~~~~~~~~~~~~~~~~~i-------------------------------~~~~dL~~~~g--------- 124 (257)
T 2q88_A 85 ERCAAVAYSQPILCDAEAFALKKGNPLGL-------------------------------KSYKDIADNPD--------- 124 (257)
T ss_dssp HHHTTSEECSCCCEECEEEEEETTCTTCC-------------------------------CBHHHHHHCTT---------
T ss_pred HHHhccccccchhcCceEEEEECCCccCC-------------------------------CCHHHHhccCC---------
Confidence 8889999999999999999998432111 0224455 6
Q ss_pred HHHHHHHhhhcccccccccccchhhhhhhhhhhcccceeeecCCcHHhhhhcCCCCcccccccCCHHHHHHHhccCccCC
Q 041608 232 FWYSFSTLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLNFKDSRLKKYNSTKEYANALSKESKNG 311 (448)
Q Consensus 232 ~w~~~~~l~~q~~~~~~s~s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 311 (448)
+++|+..|+....++++.+++..+++.+.+..+.+++|.+|+
T Consensus 125 -----------------------------------~~i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~gr--- 166 (257)
T 2q88_A 125 -----------------------------------AKIGAPGGGTEEKLALEAGVPRDRVIVVPDGQSGLKMLQDGR--- 166 (257)
T ss_dssp -----------------------------------CCEEECTTSHHHHHHHHTTCCGGGEEECSSHHHHHHHHHHTS---
T ss_pred -----------------------------------ceEEEECCcccHHHHHhcCCCCceEEEcCCHHHHHHHHHcCC---
Confidence 899999999999999876666667788999999999996666
Q ss_pred ceEEEEcchhhHHHHHHcCC-CceEEeCCCccCCCCCeeEEEecCCc-cHHHHHHHHHhHhhcCchhHHHHHhcc
Q 041608 312 GISAIIDEMPYIKAFLAKYS-AHYTLTAPKNTNSTNGFGFVFQKGSS-LVHDISKAIARLREEGTLTKIENEWFI 384 (448)
Q Consensus 312 ~~~a~i~~~~~~~y~~~~~c-~~l~~v~~~~~~~~~~~~~a~~k~sp-l~~~in~~il~l~e~G~l~~l~~kw~~ 384 (448)
+|+++.+...+.+++++.. ..+....+.......+++++++|+++ +.+.||++|.+|.++|.++++.+||.-
T Consensus 167 -vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~~~~~g~~~~i~~k~~~ 240 (257)
T 2q88_A 167 -IDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYCDGAAFRKGDEALRDAFDVELAKLKESGEFAKIIEPYGF 240 (257)
T ss_dssp -CSEEEEEHHHHHHHHHHHCCTTEEEECSCBTCCCEEBCCEECGGGHHHHHHHHHHHHHHHHHTHHHHHHGGGTC
T ss_pred -CcEEEcCHHHHHHHHHhCCCcceeeecccCCccccceEEEEcCCCHHHHHHHHHHHHHHHhCCcHHHHHHHhCC
Confidence 9999999999999988763 34555543310123568889999987 999999999999999999999999943
No 29
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=99.75 E-value=7.5e-18 Score=157.48 Aligned_cols=208 Identities=22% Similarity=0.351 Sum_probs=165.1
Q ss_pred CCCeEEEEeccCCccccee---cccCCCCCeeEEEehHHHHHHHHHHCCCcccEEEEecCC-----CCCCcC----C---
Q 041608 91 KINKLRIGVPVNGFKELVN---AARDPQGTLIVEGICIDVFKSAIDSLTFEVPYEFIPFED-----ASGRMA----G--- 155 (448)
Q Consensus 91 ~~~~l~V~~~~~p~~p~~~---~~~d~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~-----~~g~~~----g--- 155 (448)
+.++++|++. +.++||.+ . ++++++.|+++|+++++++++|++++++..++.. .+|..+ +
T Consensus 37 ~~~~l~v~~~-~~~~P~~~~~~~----~~~g~~~G~~~dl~~~~~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~ 111 (269)
T 4i62_A 37 SKGKLVVALN-PDFAPFEYQKVV----DGKNQIVGSDIELAKAIATELGVELELSPMSFDNVLASVQSGKADLAISGVSK 111 (269)
T ss_dssp HHTEEEEEEC-SCBTTTBEEEEE----TTEEEEESHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHTTSCSEECSSCBC
T ss_pred cCCeEEEEec-CCCCCceeeccc----CCCCcEeeecHHHHHHHHHHHCCceEEEEcCHHHHHHHHhCCCccEEecCCcC
Confidence 4579999997 45667665 3 5678899999999999999999987776665431 122222 1
Q ss_pred ---ccccccccccceecceEEEEEccCCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcccchhhHH
Q 041608 156 ---SSLYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQGSRAHQFGMIF 232 (448)
Q Consensus 156 ---R~~~vdFS~p~~~~~~~ilv~~~~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~ 232 (448)
|.+.+.||.||+..+..++++++....+ .+..++.|
T Consensus 112 ~~~r~~~~~~s~p~~~~~~~~~~~~~~~~~i-------------------------------~~~~dL~g---------- 150 (269)
T 4i62_A 112 TDERSKVFDFSTPYYTAKNKLIVKKSDLATY-------------------------------QSVNDLAQ---------- 150 (269)
T ss_dssp CHHHHTTEEECSCCEECCEEEEEEGGGTTTC-------------------------------SSGGGGC-----------
T ss_pred CHhHhhceecccchhhcceEEEEECCccccc-------------------------------cCHHHhCC----------
Confidence 8899999999999999999998532211 14567788
Q ss_pred HHHHHHhhhcccccccccccchhhhhhhhhhhcccceeeecCCcHHhhhhcCCCCcccccccCCHHHHHHHhccCccCCc
Q 041608 233 WYSFSTLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLNFKDSRLKKYNSTKEYANALSKESKNGG 312 (448)
Q Consensus 233 w~~~~~l~~q~~~~~~s~s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 312 (448)
+++|+..|+....+++.. .+..++..+.+.++.+++|.+|+
T Consensus 151 ----------------------------------~~i~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~g~---- 191 (269)
T 4i62_A 151 ----------------------------------KKVGAQKGSIQETMAKDL-LQNSSLVSLPKNGNLITDLKSGQ---- 191 (269)
T ss_dssp ----------------------------------CEEEEETTSHHHHHHHHH-CTTSEEEEESCHHHHHHHHHTTS----
T ss_pred ----------------------------------CeEEEecCchHHHHHHHh-CCCCcEEecCCHHHHHHHHHcCC----
Confidence 899999999998888643 34557788999999999996665
Q ss_pred eEEEEcchhhHHHHHHcCCCceEEeCCCccCC---CCCeeEEEecCCc-cHHHHHHHHHhHhhcCchhHHHHHhcccC
Q 041608 313 ISAIIDEMPYIKAFLAKYSAHYTLTAPKNTNS---TNGFGFVFQKGSS-LVHDISKAIARLREEGTLTKIENEWFIDR 386 (448)
Q Consensus 313 ~~a~i~~~~~~~y~~~~~c~~l~~v~~~~~~~---~~~~~~a~~k~sp-l~~~in~~il~l~e~G~l~~l~~kw~~~~ 386 (448)
+||++.+...+.++++++. .+...... +. ..+++++++|++| +.+.+|++|.++.++|.++++.+||++..
T Consensus 192 vDa~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~ 266 (269)
T 4i62_A 192 VDAVIFEEPVAKGFVENNP-DLAIADLN--FEKEQDDSYAVAMKKDSKELKEAVDKTIQKLKESGELDKLIEDAFKAS 266 (269)
T ss_dssp SSEEEEEHHHHHHHHHHCT-TEEECSCC--CCC-CCCEECCEEESSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred CCEEEeChHHHHHHHHhCC-CCeEEeec--cCCCcccceEEEEeCCCHHHHHHHHHHHHHHHhCChHHHHHHHHhCCc
Confidence 9999999999999998876 56655444 33 6789999999998 99999999999999999999999999763
No 30
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=99.74 E-value=7.2e-18 Score=153.32 Aligned_cols=203 Identities=18% Similarity=0.316 Sum_probs=158.0
Q ss_pred CeEEEEeccCCcccceecccCCCCCeeEEEehHHHHHHHHHHCCCcccEEEEec-CC-----CCCCcC----C------c
Q 041608 93 NKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDSLTFEVPYEFIPF-ED-----ASGRMA----G------S 156 (448)
Q Consensus 93 ~~l~V~~~~~p~~p~~~~~~d~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~-~~-----~~g~~~----g------R 156 (448)
++|+|++.. ++||.+. .++++.|+++|+++++++++|++++++..+. .. .+|..+ + |
T Consensus 3 ~~l~v~~~~--~~P~~~~-----~~g~~~G~~~dl~~~~~~~~g~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r 75 (228)
T 2pyy_A 3 QPLLVATRV--IPPFVLS-----NKGELSGFSIDLWRSIATQIGIESKLIEYSSVPELISAIKDNKVNLGIAAISITAER 75 (228)
T ss_dssp -CEEEEECC--BTTTBBC-----C---CBSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHTTSCSEECSSCBCCHHH
T ss_pred ceEEEEecC--CCCeEEe-----cCCceEEEeHHHHHHHHHHhCCcEEEEEcCCHHHHHHHHHCCCcCEEEeccccCHHH
Confidence 689999964 7777762 3456899999999999999999877776632 21 122222 1 8
Q ss_pred cccccccccceecceEEEEEccCC--CCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcccchhhHHHH
Q 041608 157 SLYVDFTLPYTEMGIGMIVPIDQS--NNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQGSRAHQFGMIFWY 234 (448)
Q Consensus 157 ~~~vdFS~p~~~~~~~ilv~~~~~--~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~w~ 234 (448)
.+.+.||.||+..+.+++++++.. ... .+..++.|
T Consensus 76 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~dL~g------------ 112 (228)
T 2pyy_A 76 EQNFDFSLPIFASGLQIMVRNLESGTGDI-------------------------------RSIDDLPG------------ 112 (228)
T ss_dssp HHHSEECSCSEEEEEEEEEEC-----CCC-------------------------------CSGGGCTT------------
T ss_pred HccceecccchhcceEEEEECCccccCCc-------------------------------CCHHHcCC------------
Confidence 888999999999999999988431 111 14467778
Q ss_pred HHHHhhhcccccccccccchhhhhhhhhhhcccceeeecCCcHHhhhhcCCCCcccccccCCHHHHHHHhccCccCCceE
Q 041608 235 SFSTLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLNFKDSRLKKYNSTKEYANALSKESKNGGIS 314 (448)
Q Consensus 235 ~~~~l~~q~~~~~~s~s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 314 (448)
+++|+..|+....++++.+. ++..+.+..+.+++|.+|+ +|
T Consensus 113 --------------------------------~~i~~~~g~~~~~~l~~~~~---~~~~~~~~~~~~~~l~~g~----~D 153 (228)
T 2pyy_A 113 --------------------------------KVVATTAGSTAATYLREHHI---SVLEVPKIEEAYKALQTKK----AD 153 (228)
T ss_dssp --------------------------------CEEEEETTSHHHHHHHHTTC---EEEEESSHHHHHHHHHTTS----SS
T ss_pred --------------------------------CeEEEEcCcHHHHHHHHcCC---ceEecCCHHHHHHHHHcCC----CC
Confidence 89999999999888875443 5677889999999996665 99
Q ss_pred EEEcchhhHHHHHHcCC-CceEEeCCCccCCCCCeeEEEecCCccHHHHHHHHHhHhhcCchhHHHHHhcccC
Q 041608 315 AIIDEMPYIKAFLAKYS-AHYTLTAPKNTNSTNGFGFVFQKGSSLVHDISKAIARLREEGTLTKIENEWFIDR 386 (448)
Q Consensus 315 a~i~~~~~~~y~~~~~c-~~l~~v~~~~~~~~~~~~~a~~k~spl~~~in~~il~l~e~G~l~~l~~kw~~~~ 386 (448)
+++.+...+.+++++.. ..+.+++.. +....++++++|++++.+.+|++|.+|.++|.++++.+||+...
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~g~~~~i~~k~~~~~ 224 (228)
T 2pyy_A 154 AVVFDAPVLLFYAANEGKGKVEIVGSI--LREESYGIILPNNSPYRKPINQALLNLKENGTYQSLYDKWFDPK 224 (228)
T ss_dssp EEEEEHHHHHHHHHTTTTTTEEEEEEE--EEEEEECCEECTTCTTHHHHHHHHHHHHHTTHHHHHHHHHHCC-
T ss_pred EEEecHHHHHHHHHhCCCCcEEEeccc--ccceeEEEEEeCChHHHHHHHHHHHHHHhCCcHHHHHHHHcCCc
Confidence 99999999999888762 267777766 66778999999999999999999999999999999999999864
No 31
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=99.74 E-value=2.9e-17 Score=153.35 Aligned_cols=204 Identities=18% Similarity=0.218 Sum_probs=165.1
Q ss_pred CCCeEEEEeccCCcccceecccCCCCCeeEEEehHHHHHHHHHHCCCcccEEEEecCCC-----CCCcC----C------
Q 041608 91 KINKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDSLTFEVPYEFIPFEDA-----SGRMA----G------ 155 (448)
Q Consensus 91 ~~~~l~V~~~~~p~~p~~~~~~d~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~-----~g~~~----g------ 155 (448)
..++|+|++. +.++||.+. +.++++.|+++|+++.+++++|++++++..++... .|..+ +
T Consensus 29 ~~~~l~v~~~-~~~~P~~~~----~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~ 103 (268)
T 3qax_A 29 RNRIWIVGTN-ATYPPFEYV----DAQGEVVGFDIDLAKAISEKLGKQLEVREFAFDALILNLKKHRIDAILAGMSITPS 103 (268)
T ss_dssp --CEEEEEEC-SCBTTTBEE----CTTSCEESHHHHHHHHHHHHHTCEEEEEECCGGGHHHHHHHTSSSEECSCCBCCHH
T ss_pred cCCeEEEEEC-CCCCCceEE----CCCCCEEEEEHHHHHHHHHHhCCeEEEEecCHHHHHHHHhCCCccEEeecCccCHh
Confidence 4578999997 456677664 45677999999999999999998877766654310 12211 1
Q ss_pred ccccccccccce--ecceEEEEEcc-CCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcccchhhHH
Q 041608 156 SSLYVDFTLPYT--EMGIGMIVPID-QSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQGSRAHQFGMIF 232 (448)
Q Consensus 156 R~~~vdFS~p~~--~~~~~ilv~~~-~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~ 232 (448)
|.+.++| .||+ ..+..++++++ .... +..+++|
T Consensus 104 r~~~~~~-~p~~~~~~~~~~~~~~~~~~i~---------------------------------~~~dL~g---------- 139 (268)
T 3qax_A 104 RQKEIAL-LPYYGDEVQELMVVSKRSLETP---------------------------------VLPLTQY---------- 139 (268)
T ss_dssp HHTTSEE-EEEECCCBCEEEEEEETTSCSC---------------------------------CCCGGGS----------
T ss_pred Hhcceee-ecceecccceEEEEECCCCCCC---------------------------------CHHHhCC----------
Confidence 8889999 9999 89999999885 2221 4577888
Q ss_pred HHHHHHhhhcccccccccccchhhhhhhhhhhcccceeeecCCcHHhhhhcCCCCcccccccCCHHHHHHHhccCccCCc
Q 041608 233 WYSFSTLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLNFKDSRLKKYNSTKEYANALSKESKNGG 312 (448)
Q Consensus 233 w~~~~~l~~q~~~~~~s~s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 312 (448)
+++|+..|+....++.. .+..+++.+.+.++.+++|.+|+
T Consensus 140 ----------------------------------~~i~~~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~~l~~G~---- 179 (268)
T 3qax_A 140 ----------------------------------SSVAVQTGTYQEHYLLS--QPGICVRSFDSTLEVIMEVRYGK---- 179 (268)
T ss_dssp ----------------------------------SCEEEETTSHHHHHHHT--STTCCEEEESCHHHHHHHHHTTS----
T ss_pred ----------------------------------CEEEEecCcHHHHHHHh--CCCceEEecCCHHHHHHHHHcCC----
Confidence 89999999999988875 44557778899999999996665
Q ss_pred eEEEEcchhhHHHHHHcCCCceEEeCCCccCCCCC----eeEEEecCCc-cHHHHHHHHHhHhhcCchhHHHHHhcccC
Q 041608 313 ISAIIDEMPYIKAFLAKYSAHYTLTAPKNTNSTNG----FGFVFQKGSS-LVHDISKAIARLREEGTLTKIENEWFIDR 386 (448)
Q Consensus 313 ~~a~i~~~~~~~y~~~~~c~~l~~v~~~~~~~~~~----~~~a~~k~sp-l~~~in~~il~l~e~G~l~~l~~kw~~~~ 386 (448)
+||++.+...+.+++++.. .+.+++.. +.... ++++++|++| +++.+|++|.++.++|.++++.+||+...
T Consensus 180 vDa~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~ 255 (268)
T 3qax_A 180 SPVAVLEPSVGRVVLKDFP-NLVATRLE--LPPECWVLGCGLGVAKDRPEEIQTIQQAITDLKSEGVIQSLTKKWQLSE 255 (268)
T ss_dssp SSEEEECHHHHHHHGGGCT-TEEEEEEE--CCGGGCBCCEEEEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHTTCSC
T ss_pred CCEEEecHHHHHHHHHhCC-CcEEecCc--cCcccccccEEEEEeCCCHHHHHHHHHHHHHHHHCCcHHHHHHHHcCCc
Confidence 9999999999999998876 47877766 67777 9999999998 99999999999999999999999999764
No 32
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=99.74 E-value=1.6e-17 Score=157.47 Aligned_cols=205 Identities=17% Similarity=0.273 Sum_probs=165.9
Q ss_pred CCCeEEEEeccCCcccceecccCCCCCeeEEEehHHHHHHHHHHCCCcccEEEEecCCC-----CCCc----------CC
Q 041608 91 KINKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDSLTFEVPYEFIPFEDA-----SGRM----------AG 155 (448)
Q Consensus 91 ~~~~l~V~~~~~p~~p~~~~~~d~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~-----~g~~----------~g 155 (448)
+.++|+|++. +.|+||.+. +.++++.|+.+|+++.+++++|++++++..++... +|.. +.
T Consensus 55 ~~~~l~v~~~-~~~~P~~~~----~~~g~~~G~~~dl~~~i~~~~G~~v~~~~~~~~~~~~~l~~G~~D~~~~~~~~~t~ 129 (283)
T 2yln_A 55 NKGTVTVGTE-GTYAPFTYH----DKDGKLTGYDVEVTRAVAEKLGVKVEFKETQWDSMMAGLKAGRFDVVANQVGLTSP 129 (283)
T ss_dssp HTCEEEEEEC-SEETTTEEE----CTTSCEESHHHHHHHHHHHHHTCEEEEEECCGGGHHHHHHHTSCSEECSSCCCCSH
T ss_pred cCCeEEEEEC-CCCCCeeEE----CCCCCEeeehHHHHHHHHHHcCCceEEEECCHHHHHHHHHCCCcCEEEecCccCCh
Confidence 4578999997 457777775 34567999999999999999999877776664310 1111 11
Q ss_pred -ccccccccccceecceEEEEEccCCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcccchhhHHHH
Q 041608 156 -SSLYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQGSRAHQFGMIFWY 234 (448)
Q Consensus 156 -R~~~vdFS~p~~~~~~~ilv~~~~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~w~ 234 (448)
|.+.++|+.||+..+..++++++.... +..++.|
T Consensus 130 ~r~~~~~~~~p~~~~~~~l~~~~~~~i~---------------------------------s~~dL~G------------ 164 (283)
T 2yln_A 130 ERQATFDKSEPYSWSGAVLVAHNDSNIK---------------------------------SIADIKG------------ 164 (283)
T ss_dssp HHHHHEEECSCSEEECEEEEEETTCSCC---------------------------------SGGGCTT------------
T ss_pred hhhcceEeccCeeeecEEEEEECCCCCC---------------------------------CHHHhCC------------
Confidence 788899999999999999999843211 4577888
Q ss_pred HHHHhhhcccccccccccchhhhhhhhhhhcccceeeecCCcHHhhhhcCCCCcccccccCCHHHHHHHhccCccCCceE
Q 041608 235 SFSTLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLNFKDSRLKKYNSTKEYANALSKESKNGGIS 314 (448)
Q Consensus 235 ~~~~l~~q~~~~~~s~s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 314 (448)
++||+..|+....++++.+ .+++.+.+..+.+++|.+|+ +|
T Consensus 165 --------------------------------~~v~v~~g~~~~~~l~~~~---~~~~~~~~~~~~~~~l~~g~----vD 205 (283)
T 2yln_A 165 --------------------------------VKTAQSLTSNYGEKAKAAG---AQLVPVDGLAQSLTLIEQKR----AD 205 (283)
T ss_dssp --------------------------------SEEEECTTSHHHHHHHHTT---CEEEECSSHHHHHHHHHTTS----CC
T ss_pred --------------------------------CEEEEecCchHHHHHHHcC---CeEEEeCCHHHHHHHHHcCC----CC
Confidence 8999999999988887553 35677889999999996665 99
Q ss_pred EEEcchhhHHHHHHcC-CCceEEeC-CCccCC-CCCeeEEEecCCc-cHHHHHHHHHhHhhcCchhHHHHHhcccC
Q 041608 315 AIIDEMPYIKAFLAKY-SAHYTLTA-PKNTNS-TNGFGFVFQKGSS-LVHDISKAIARLREEGTLTKIENEWFIDR 386 (448)
Q Consensus 315 a~i~~~~~~~y~~~~~-c~~l~~v~-~~~~~~-~~~~~~a~~k~sp-l~~~in~~il~l~e~G~l~~l~~kw~~~~ 386 (448)
+++.+...+.+++++. ..++++++ .. +. ...++++++|++| +.+.||++|.++.++|.++++.+||++..
T Consensus 206 a~i~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~i~~~k~~~~l~~~i~~al~~l~~~g~~~~i~~k~~~~~ 279 (283)
T 2yln_A 206 ATLNDELAVLDYLKKNPNAGVKIVWSAP--ADEKVGSGLIVNKGNDEAVAKFSTAINELKADGTLKKLGEQFFGKD 279 (283)
T ss_dssp EEEEEHHHHHHHHHHSTTSSEEEEEECC--GGGCEEECCEEESSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred EEEecHHHHHHHHHhCCCCcEEEccCcc--cCCcccEEEEEeCCCHHHHHHHHHHHHHHHHCCcHHHHHHHHcCCC
Confidence 9999999999988876 33588887 66 67 7889999999987 99999999999999999999999999864
No 33
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=99.73 E-value=3e-17 Score=154.37 Aligned_cols=208 Identities=18% Similarity=0.308 Sum_probs=163.7
Q ss_pred CCCeEEEEeccCCcccceecccCCCCCeeEEEehHHHHHHHHHHCCCcccEEEEecCC---------CCCCcCC------
Q 041608 91 KINKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDSLTFEVPYEFIPFED---------ASGRMAG------ 155 (448)
Q Consensus 91 ~~~~l~V~~~~~p~~p~~~~~~d~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~---------~~g~~~g------ 155 (448)
+.++|+|++. +.++||.+. .++++.|+.+|+++++++++|++++++..++.. .+-.+.+
T Consensus 40 ~~~~l~v~~~-~~~~P~~~~-----~~g~~~G~~~dl~~~i~~~~g~~v~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~ 113 (272)
T 2pvu_A 40 TKKKVVVGTD-AAFAPFEYM-----QKGKIVGFDVDLLDAVMKAAGLDYELKNIGWDPLFASLQSKEVDMGISGITITDE 113 (272)
T ss_dssp CCCCEEEEEC-CCBTTTBEE-----ETTEEESHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHTSSSEECSSCBCCHH
T ss_pred cCCeEEEEEC-CCCCCeEEe-----cCCeEEEEHHHHHHHHHHHhCCceEEEECCHHHHHHHHhCCCCCEEEeCCcCCHH
Confidence 5689999997 457777763 246799999999999999999987776665431 1111111
Q ss_pred ccccccccccceecceEEEEEccCCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcccchhhHHHHH
Q 041608 156 SSLYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQGSRAHQFGMIFWYS 235 (448)
Q Consensus 156 R~~~vdFS~p~~~~~~~ilv~~~~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~w~~ 235 (448)
|.+.++||.||+.....++++++.... +..++.|
T Consensus 114 r~~~~~~s~p~~~~~~~l~~~~~~~i~---------------------------------~~~dL~g------------- 147 (272)
T 2pvu_A 114 RKQSYDFSDPYFEATQVILVKQGSPVK---------------------------------NALDLKG------------- 147 (272)
T ss_dssp HHTTEEECSCCEEECEEEEEETTCCCC---------------------------------SGGGGTT-------------
T ss_pred HHhcCccchhhhccceEEEEECCCCCC---------------------------------CHHHhCC-------------
Confidence 888999999999999999999843311 4467788
Q ss_pred HHHhhhcccccccccccchhhhhhhhhhhcccceeeecCCcHHhhhhcC-CCCcccccccCCHHHHHHHhccCccCCceE
Q 041608 236 FSTLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNL-NFKDSRLKKYNSTKEYANALSKESKNGGIS 314 (448)
Q Consensus 236 ~~~l~~q~~~~~~s~s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 314 (448)
+++|+..|+....++++. + ...+++.+.+..+.+++|.+|+ +|
T Consensus 148 -------------------------------~~i~~~~g~~~~~~l~~~~~-~~~~i~~~~~~~~~~~~l~~G~----vD 191 (272)
T 2pvu_A 148 -------------------------------KTIGVQNATTGQEAAEKLFG-KGPHIKKFETTVVAIMELLNGG----VD 191 (272)
T ss_dssp -------------------------------SCEEEETTSHHHHHHHHHHC-SSTTEEEESSHHHHHHHHHTTS----CS
T ss_pred -------------------------------CeEEEEcCchHHHHHHHhcC-CCCeEEEcCCHHHHHHHHHcCC----cc
Confidence 899999999988888643 3 3456778899999999996665 99
Q ss_pred EEEcchhhHHHHHHcCC-CceEEeCCCccCCCCCeeEEEecCCccHHHHHHHHHhHhhcCchhHHHHHhcccC
Q 041608 315 AIIDEMPYIKAFLAKYS-AHYTLTAPKNTNSTNGFGFVFQKGSSLVHDISKAIARLREEGTLTKIENEWFIDR 386 (448)
Q Consensus 315 a~i~~~~~~~y~~~~~c-~~l~~v~~~~~~~~~~~~~a~~k~spl~~~in~~il~l~e~G~l~~l~~kw~~~~ 386 (448)
+++.+...+.+++++.. .++.+++....+....++++++|+..+.+.+|++|.++.++|.++++.+||+...
T Consensus 192 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~ 264 (272)
T 2pvu_A 192 AVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPKNSELKAKVDEALKNVINSGKYTEIYKKWFGKE 264 (272)
T ss_dssp EEEEEHHHHHHHHHHCGGGCEEEECCTTTSCCEEECCEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred EEEeCHHHHHHHHHhCCCCceEEeccccccCCceEEEEEeCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCC
Confidence 99999999999988763 2478777651025678999999994499999999999999999999999999864
No 34
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=99.73 E-value=2.4e-17 Score=156.82 Aligned_cols=205 Identities=17% Similarity=0.268 Sum_probs=166.6
Q ss_pred CCCeEEEEeccCCcccceecccCCCCCeeEEEehHHHHHHHHHHC---CCcccEEEEecCC-----CCCCcCC-------
Q 041608 91 KINKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDSL---TFEVPYEFIPFED-----ASGRMAG------- 155 (448)
Q Consensus 91 ~~~~l~V~~~~~p~~p~~~~~~d~~~~~~~~G~~idll~~la~~l---~f~~~~~~~~~~~-----~~g~~~g------- 155 (448)
+.++|+|++. +.++||.+. +.++++.|+.+|+++.+++++ |++++++..++.. .+|..+.
T Consensus 53 ~~~~l~vg~~-~~~~P~~~~----~~~g~~~G~~~dl~~~i~~~~~~~g~~v~~~~~~~~~~~~~l~~G~~D~~~~~~~~ 127 (291)
T 2yjp_A 53 EKGVIRIGVF-GDKPPFGYV----DANGKNQGFDVEIAKDLAKDLLGSPDKVEFVLTEAANRVEYVRSGKVDLILANFTQ 127 (291)
T ss_dssp HHTCEEEEEC-SEETTTEEE----CTTSCEESHHHHHHHHHHHHHHSCGGGEEEEECCGGGHHHHHHTTSCSEECSSCBC
T ss_pred cCCeEEEEEc-CCCCCceEE----CCCCCEeehHHHHHHHHHHHhccCCceEEEEEccHHHHHHHHhCCCeeEEEeCCCC
Confidence 3468999997 456677664 445679999999999999999 9988777666531 1222221
Q ss_pred ---ccccccccccceecceEEEEEccCCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcccchhhHH
Q 041608 156 ---SSLYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQGSRAHQFGMIF 232 (448)
Q Consensus 156 ---R~~~vdFS~p~~~~~~~ilv~~~~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~ 232 (448)
|.+.++|+.||...+..++++++.... +..+++|
T Consensus 128 ~~~r~~~~~~~~p~~~~~~~l~~~~~~~i~---------------------------------sl~dL~g---------- 164 (291)
T 2yjp_A 128 TPERAEAVDFADPYMKVALGVVSPKNKPIT---------------------------------DMAQLKD---------- 164 (291)
T ss_dssp CHHHHTTEEECCCCEEECEEEEEETTSCCC---------------------------------SGGGGTT----------
T ss_pred ChHHHccceeccCeeecceEEEEeCCCCCC---------------------------------CHHHhCC----------
Confidence 888899999999999999999844211 4567888
Q ss_pred HHHHHHhhhcccccccccccchhhhhhhhhhhcccceeeecCCcHHhhhhcCCCCcccccccCCHHHHHHHhccCccCCc
Q 041608 233 WYSFSTLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLNFKDSRLKKYNSTKEYANALSKESKNGG 312 (448)
Q Consensus 233 w~~~~~l~~q~~~~~~s~s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 312 (448)
+++|+..|+....+++.. ++..+++.+.+..+.+++|.+|+
T Consensus 165 ----------------------------------k~v~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~G~---- 205 (291)
T 2yjp_A 165 ----------------------------------QTLLVNKGTTADAFFTKS-HPEVKLLKFDQNTETFDALKDGR---- 205 (291)
T ss_dssp ----------------------------------SEEEEETTSHHHHHHHHH-CTTSEEEEESSHHHHHHHHHTTS----
T ss_pred ----------------------------------CEEEEecCCcHHHHHHHh-CCCceEEEeCCHHHHHHHHHcCC----
Confidence 899999999988888644 24456778889999999996665
Q ss_pred eEEEEcchhhHHHHHHcCCCceEEeCCCccCCCCCe-eEEEecCCc-cHHHHHHHHHhHhhcCchhHHHHHhccc
Q 041608 313 ISAIIDEMPYIKAFLAKYSAHYTLTAPKNTNSTNGF-GFVFQKGSS-LVHDISKAIARLREEGTLTKIENEWFID 385 (448)
Q Consensus 313 ~~a~i~~~~~~~y~~~~~c~~l~~v~~~~~~~~~~~-~~a~~k~sp-l~~~in~~il~l~e~G~l~~l~~kw~~~ 385 (448)
+||++.+.+.+.+++++.. .+.+++.. +...++ +++++|++| +.+.||++|.+|.++|.++++.+||+..
T Consensus 206 vDa~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~k~~~~l~~~l~~al~~l~~~g~~~~i~~k~~~~ 277 (291)
T 2yjp_A 206 GVALAHDNALLWAWAKENP-NFEVAIGN--LGPAEFIAPAVQKGNADLLNWVNGEIAAMKKDGRLKAAYEKTLLP 277 (291)
T ss_dssp SSEEEEEHHHHHHHHHHCT-TEEEEECC--SSSCEEECCEEETTCHHHHHHHHHHHHHHHHHSHHHHHHHHHTHH
T ss_pred ccEEEecHHHHHHHHHhCC-CeEEcCCc--ccCCcceEEEEeCCCHHHHHHHHHHHHHHHhCChHHHHHHHhccc
Confidence 9999999999999998876 58888777 778888 999999998 9999999999999999999999999975
No 35
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=99.73 E-value=2e-17 Score=157.25 Aligned_cols=206 Identities=17% Similarity=0.230 Sum_probs=167.0
Q ss_pred CCCeEEEEeccCCcccceecccCCCCCeeEEEehHHHHHHHHHHC---CCcccEEEEecCC-----CCCCcC----C---
Q 041608 91 KINKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDSL---TFEVPYEFIPFED-----ASGRMA----G--- 155 (448)
Q Consensus 91 ~~~~l~V~~~~~p~~p~~~~~~d~~~~~~~~G~~idll~~la~~l---~f~~~~~~~~~~~-----~~g~~~----g--- 155 (448)
+.++|+|++. +.++||.+. +.++++.|+++|+++++++++ |++++++..++.. ..|..+ +
T Consensus 42 ~~~~l~v~~~-~~~~P~~~~----~~~g~~~G~~~dl~~~i~~~~~~~g~~~~~~~~~~~~~~~~l~~G~~D~~~~~~~~ 116 (292)
T 1xt8_A 42 QNGVVRIGVF-GDKPPFGYV----DEKGNNQGYDIALAKRIAKELFGDENKVQFVLVEAANRVEFLKSNKVDIILANFTQ 116 (292)
T ss_dssp HHSSEEEEEC-SEETTTEEE----CTTSCEESHHHHHHHHHHHHHHSCTTCEEEEECCGGGHHHHHHTTSCSEECSSCBC
T ss_pred hCCeEEEEEC-CCCCCeeEE----CCCCCEeeEhHHHHHHHHHHhccCCceEEEEEcCHHHHHHHHhCCCeeEEeecCCC
Confidence 4578999997 456677764 345679999999999999999 9988887766542 122221 1
Q ss_pred ---ccccccccccceecceEEEEEccCCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcccchhhHH
Q 041608 156 ---SSLYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQGSRAHQFGMIF 232 (448)
Q Consensus 156 ---R~~~vdFS~p~~~~~~~ilv~~~~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~ 232 (448)
|.+.++||.||+..+..++++++.... +..++.|
T Consensus 117 ~~~r~~~~~~s~p~~~~~~~~~~~~~~~i~---------------------------------~~~dL~g---------- 153 (292)
T 1xt8_A 117 TPQRAEQVDFCSPYMKVALGVAVPKDSNIT---------------------------------SVEDLKD---------- 153 (292)
T ss_dssp CHHHHTTEEECCCCEEEEEEEEEETTCCCC---------------------------------SSGGGTT----------
T ss_pred CcchhcceeeeccceecceEEEEECCCCCC---------------------------------CHHHhCC----------
Confidence 888899999999999999999843211 4567888
Q ss_pred HHHHHHhhhcccccccccccchhhhhhhhhhhcccceeeecCCcHHhhhhcCCCCcccccccCCHHHHHHHhccCccCCc
Q 041608 233 WYSFSTLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLNFKDSRLKKYNSTKEYANALSKESKNGG 312 (448)
Q Consensus 233 w~~~~~l~~q~~~~~~s~s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 312 (448)
+++|+..|+....++++.. +..+++.+.+..+.+++|.+|+
T Consensus 154 ----------------------------------~~i~~~~g~~~~~~l~~~~-~~~~~~~~~~~~~~~~~L~~G~---- 194 (292)
T 1xt8_A 154 ----------------------------------KTLLLNKGTTADAYFTQNY-PNIKTLKYDQNTETFAALMDKR---- 194 (292)
T ss_dssp ----------------------------------SEEEEETTSHHHHHHHHHC-TTSEEEEESSHHHHHHHHHTTS----
T ss_pred ----------------------------------CEEEEeCCCcHHHHHHHhC-CCceEEEcCCHHHHHHHHHcCC----
Confidence 8999999999888886442 3446678899999999996666
Q ss_pred eEEEEcchhhHHHHHHcCCCceEEeCCCccCCCCCe-eEEEecCCc-cHHHHHHHHHhHhhcCchhHHHHHhcccC
Q 041608 313 ISAIIDEMPYIKAFLAKYSAHYTLTAPKNTNSTNGF-GFVFQKGSS-LVHDISKAIARLREEGTLTKIENEWFIDR 386 (448)
Q Consensus 313 ~~a~i~~~~~~~y~~~~~c~~l~~v~~~~~~~~~~~-~~a~~k~sp-l~~~in~~il~l~e~G~l~~l~~kw~~~~ 386 (448)
+|+++.+...+.+++++.. ++++++.. +...++ +++++|++| +.+.+|++|.++.++|.++++.+||+...
T Consensus 195 vDa~~~~~~~~~~~~~~~~-~l~~~~~~--~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~ 267 (292)
T 1xt8_A 195 GDALSHDNTLLFAWVKDHP-DFKMGIKE--LGNKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKAH 267 (292)
T ss_dssp SSEEEEEHHHHHHHHHHCT-TEEEEEEE--EEEEEEECCEEETTCHHHHHHHHHHHHHHHTTTHHHHHHHHHTGGG
T ss_pred ccEEEecHHHHHHHHHhCC-CeEEcccc--cccCceeEEEEeCCCHHHHHHHHHHHHHHHhCcHHHHHHHHhcCCc
Confidence 9999999999999998876 58877766 677788 999999998 99999999999999999999999999853
No 36
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=99.73 E-value=3.2e-17 Score=155.36 Aligned_cols=208 Identities=14% Similarity=0.205 Sum_probs=163.0
Q ss_pred CCCeEEEEeccCCcccceecccCCCCCeeEEEehHHHHHHHHHH----CC---CcccEEEEecCC-----CCCCcC----
Q 041608 91 KINKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDS----LT---FEVPYEFIPFED-----ASGRMA---- 154 (448)
Q Consensus 91 ~~~~l~V~~~~~p~~p~~~~~~d~~~~~~~~G~~idll~~la~~----l~---f~~~~~~~~~~~-----~~g~~~---- 154 (448)
+.++|+|++. +.++||.+. +.++++.|+++|+++++++. +| +++++...++.. ..|..+
T Consensus 15 ~~~~l~v~~~-~~~~P~~~~----~~~g~~~G~~~dl~~~ia~~l~~~~G~~~~~v~~~~~~~~~~~~~l~~g~~D~~~~ 89 (287)
T 2vha_A 15 KNGVIVVGHR-ESSVPFSYY----DNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLLQNGTFDFECG 89 (287)
T ss_dssp HHTEEEEEEC-SEETTTEEE----CSSSCEESHHHHHHHHHHHHHHHHTTCTTCEEEEEECCTTTHHHHHHTTSCSEECS
T ss_pred hCCeEEEEEc-CCCCCceEE----CCCCCcccccHHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHHHHHCCCeeEEec
Confidence 5689999997 456777764 34567999999999999976 67 665555444421 022221
Q ss_pred C------ccccccccccceecceEEEEEccCCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcccch
Q 041608 155 G------SSLYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQGSRAHQF 228 (448)
Q Consensus 155 g------R~~~vdFS~p~~~~~~~ilv~~~~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~ 228 (448)
+ |.+.++||.||+..+..++++++.... +..++.|
T Consensus 90 ~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~~i~---------------------------------sl~dL~g------ 130 (287)
T 2vha_A 90 STTNNVERQKQAAFSDTIFVVGTRLLTKKGGDIK---------------------------------DFADLKG------ 130 (287)
T ss_dssp SCBCCHHHHTTCEEEEEEEEEEEEEEEETTSSCC---------------------------------SGGGGTT------
T ss_pred cccCCcchhhcccccceeeecceEEEEECCCCCC---------------------------------CHHHcCC------
Confidence 1 888999999999999999999843211 3467777
Q ss_pred hhHHHHHHHHhhhcccccccccccchhhhhhhhhhhcccceeeecCCcHHhhhhcCC---CCcccccccCCHHHHHHHhc
Q 041608 229 GMIFWYSFSTLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLN---FKDSRLKKYNSTKEYANALS 305 (448)
Q Consensus 229 ~~~~w~~~~~l~~q~~~~~~s~s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~~~---~~~~~~~~~~~~~~~~~~l~ 305 (448)
+++|+..|+....+++... ....+++.+.+..+.+++|.
T Consensus 131 --------------------------------------~~v~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 172 (287)
T 2vha_A 131 --------------------------------------KAVVVTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLE 172 (287)
T ss_dssp --------------------------------------CEEEEETTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHH
T ss_pred --------------------------------------CEEEEeCCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHH
Confidence 8999999998888775321 12346678899999999996
Q ss_pred cCccCCceEEEEcchhhHHHHHHcC--CCceEEeCCCccCCCCCeeEEEecCCc-cHHHHHHHHHhHhhcCchhHHHHHh
Q 041608 306 KESKNGGISAIIDEMPYIKAFLAKY--SAHYTLTAPKNTNSTNGFGFVFQKGSS-LVHDISKAIARLREEGTLTKIENEW 382 (448)
Q Consensus 306 ~~~~~~~~~a~i~~~~~~~y~~~~~--c~~l~~v~~~~~~~~~~~~~a~~k~sp-l~~~in~~il~l~e~G~l~~l~~kw 382 (448)
+|+ +|+++.+...+.+++++. ...+.+++.. +....++++++|++| +++.||++|.+|.++|.++++.+||
T Consensus 173 ~G~----vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~ 246 (287)
T 2vha_A 173 SGR----AVAFMMDDALLAGERAKAKKPDNWDIVGKP--QSQEAYGCMLRKDDPQFKKLMDDTIAQVQTSGEAEKWFDKW 246 (287)
T ss_dssp TTS----CSEEEEEHHHHHHHHTTSSSGGGEEEESCC--SCEEEEEEEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred cCC----eeEEEeChHHHHHHHHhCCCCCceEecCCc--cccCceEEEEeCCCHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 665 999999999999998874 2368888877 778889999999988 9999999999999999999999999
Q ss_pred cccC
Q 041608 383 FIDR 386 (448)
Q Consensus 383 ~~~~ 386 (448)
+...
T Consensus 247 ~~~~ 250 (287)
T 2vha_A 247 FKNP 250 (287)
T ss_dssp HHSC
T ss_pred cCCC
Confidence 9875
No 37
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=99.54 E-value=8.9e-15 Score=135.55 Aligned_cols=200 Identities=16% Similarity=0.297 Sum_probs=153.0
Q ss_pred CCCeEEEEeccCCcccceecccCCCCCeeEEEehHHHHHHHHHHC---CCcccEEEEecCC-----CCCCcCC-------
Q 041608 91 KINKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDSL---TFEVPYEFIPFED-----ASGRMAG------- 155 (448)
Q Consensus 91 ~~~~l~V~~~~~p~~p~~~~~~d~~~~~~~~G~~idll~~la~~l---~f~~~~~~~~~~~-----~~g~~~g------- 155 (448)
+.++|+||+. +.++||.+.+ ..++++.|+++|+++.+++++ |++++++..++.. ..|..+.
T Consensus 36 ~~~~l~vg~~-~~~~p~~~~~---~~~g~~~G~~~~l~~~~~~~~~~pg~~v~~~~~~~~~~~~~l~~g~~D~~~~~~~~ 111 (259)
T 2v25_A 36 SKGQLIVGVK-NDVPHYALLD---QATGEIKGFEVDVAKLLAKSILGDDKKIKLVAVNAKTRGPLLDNGSVDAVIATFTI 111 (259)
T ss_dssp HHTCEEEEEC-SEETTTEEEE---TTTTEEESHHHHHHHHHHHHHHSCTTSEEEEECCTTTHHHHHHTTSCSEECSSCBC
T ss_pred hCCeEEEEEC-CCCCCeEEEE---CCCCeEEEeeHHHHHHHHHHhcCCCcceEEEEcCHHHHHHHHhCCCCCEEEecCcc
Confidence 4578999997 4566666531 135679999999999999999 9887776665432 1222221
Q ss_pred ---ccccccccccceecceEEEEEccCCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcccchhhHH
Q 041608 156 ---SSLYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQGSRAHQFGMIF 232 (448)
Q Consensus 156 ---R~~~vdFS~p~~~~~~~ilv~~~~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~ 232 (448)
|.+.++|+.||...+..++++++.... +..++.|
T Consensus 112 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~---------------------------------~~~dL~g---------- 148 (259)
T 2v25_A 112 TPERKRIYNFSEPYYQDAIGLLVLKEKKYK---------------------------------SLADMKG---------- 148 (259)
T ss_dssp CHHHHTTEEECSCSEEEEEEEEEEGGGCCC---------------------------------SGGGCTT----------
T ss_pred CHHHHhcCcccccceeCceEEEEeCCCCCC---------------------------------CHHHhCC----------
Confidence 778899999999999999999843211 3467777
Q ss_pred HHHHHHhhhcccccccccccchhhhhhhhhhhcccceeeecCCcHHhhhhc----CCCCcccccccCCHHHHHHHhccCc
Q 041608 233 WYSFSTLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSN----LNFKDSRLKKYNSTKEYANALSKES 308 (448)
Q Consensus 233 w~~~~~l~~q~~~~~~s~s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~----~~~~~~~~~~~~~~~~~~~~l~~~~ 308 (448)
+++++..|+.....++. .+++ .++..+.+..+.+++|.+|+
T Consensus 149 ----------------------------------~~i~~~~g~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~l~~g~ 193 (259)
T 2v25_A 149 ----------------------------------ANIGVAQAATTKKAIGEAAKKIGID-VKFSEFPDYPSIKAALDAKR 193 (259)
T ss_dssp ----------------------------------CEEEEETTCSHHHHHHHHHHHTTCC-CEEEEESSHHHHHHHHHTTS
T ss_pred ----------------------------------CEEEEecCCchHHHHHHHHHhcCCc-eeEEEeCCHHHHHHHHHcCC
Confidence 89999999888776643 2332 24567889999999996655
Q ss_pred cCCceEEEEcchhhHHHHHHcCCCceEEeCCCccCCCCCeeEEEecCCc-cHHHHHHHHHhHhhcCchhHHHHHhc
Q 041608 309 KNGGISAIIDEMPYIKAFLAKYSAHYTLTAPKNTNSTNGFGFVFQKGSS-LVHDISKAIARLREEGTLTKIENEWF 383 (448)
Q Consensus 309 ~~~~~~a~i~~~~~~~y~~~~~c~~l~~v~~~~~~~~~~~~~a~~k~sp-l~~~in~~il~l~e~G~l~~l~~kw~ 383 (448)
+|+++.+...+.+++++.. . +++.. +....++++++|++| +.+.+|++|.++.++ ++++.+||.
T Consensus 194 ----vDa~~~~~~~~~~~~~~~~-~--~~~~~--~~~~~~~~~~~k~~~~l~~~~~~~l~~~~~~--~~~i~~k~~ 258 (259)
T 2v25_A 194 ----VDAFSVDKSILLGYVDDKS-E--ILPDS--FEPQSYGIVTKKDDPAFAKYVDDFVKEHKNE--IDALAKKWG 258 (259)
T ss_dssp ----SSEEEEEHHHHTTTCCTTE-E--ECSCC--CSEEEECCEEETTCHHHHHHHHHHHHHTHHH--HHHHHHHTT
T ss_pred ----CcEEEecHHHHHHHHHhCC-C--ccccc--cccceeEEEEcCCCHHHHHHHHHHHHHHHHH--HHHHHHHhC
Confidence 9999999988888776654 3 45555 677789999999996 999999999999999 899999984
No 38
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=98.54 E-value=3.2e-08 Score=97.08 Aligned_cols=52 Identities=17% Similarity=0.466 Sum_probs=48.5
Q ss_pred CccceeeeeeeeEEe-eCCcccCCCCEEEEEecCCceEEEEEEcCCCCCccccc
Q 041608 1 IINSRFTSLSGNFQL-VDGKLTSSGAFEIVNVIGKTLKRVGFWSPITRISKEMN 53 (448)
Q Consensus 1 ~~~~~~~G~tg~~~f-~~g~~~~~~~~~i~~~~~~~~~~~g~W~~~~g~~~~~~ 53 (448)
|++++|+|+||+|.| ++|.|.++ .|+|+|++++|+++||+|++..||.+..+
T Consensus 328 l~~v~f~G~tG~v~Fd~~G~r~~~-~~~I~~l~~~~~~~VG~W~~~~gl~~~~~ 380 (389)
T 4gpa_A 328 LKQVRIQGLTGNVQFDHYGRRVNY-TMDVFELKSTGPRKVGYWNDMDKLVLIQD 380 (389)
T ss_dssp HHTCEEEETTEEEEBCTTSCBCSC-EEEEEEEETTEEEEEEEEETTTEEEECCC
T ss_pred HHhCceecCceeEEECCCCCCCCC-EEEEEEEECCEEEEEEEEECCCCeEECCC
Confidence 478999999999999 99999999 99999999999999999999999988654
No 39
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=97.94 E-value=4.2e-06 Score=82.31 Aligned_cols=52 Identities=13% Similarity=0.357 Sum_probs=41.9
Q ss_pred CccceeeeeeeeEEe-eCCcccCCCCEEEEEecCCceEEEEEEcCCCCCccccc
Q 041608 1 IINSRFTSLSGNFQL-VDGKLTSSGAFEIVNVIGKTLKRVGFWSPITRISKEMN 53 (448)
Q Consensus 1 ~~~~~~~G~tg~~~f-~~g~~~~~~~~~i~~~~~~~~~~~g~W~~~~g~~~~~~ 53 (448)
|++++|+|+||++.| ++|.+.++ .|+|+|++++++++||+|++..|+++...
T Consensus 331 l~~~~f~G~tG~i~fd~~G~~~~~-~~~i~~~~~~g~~~VG~w~~~~gl~~~~~ 383 (393)
T 3om0_A 331 LRMVEYDGLTGRVEFNSKGQRTNY-TLRILEKSRQGHREIGVWYSNRTLAMNAT 383 (393)
T ss_dssp HTTCCEEETTEEECBCTTSCBCSC-EEEEEEEETTEEEEEEEEECC--------
T ss_pred HHhCCCCCccceEEeCCCCcccce-eEEEEEeccCCceEeeeEcCCCCcccccc
Confidence 467899999999999 89999999 99999999999999999999999987643
No 40
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=97.80 E-value=2.4e-05 Score=74.52 Aligned_cols=84 Identities=7% Similarity=0.027 Sum_probs=66.2
Q ss_pred cCCHHHHHHHhccCccCCceEEEEcchhhHHHHHHcC---CCceEEeCCCccCCCCCeeEEEecCC-c-cHHHHHHHHHh
Q 041608 294 YNSTKEYANALSKESKNGGISAIIDEMPYIKAFLAKY---SAHYTLTAPKNTNSTNGFGFVFQKGS-S-LVHDISKAIAR 368 (448)
Q Consensus 294 ~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~y~~~~~---c~~l~~v~~~~~~~~~~~~~a~~k~s-p-l~~~in~~il~ 368 (448)
..+..+.+.+|..|+ +|+.+.+...+.++.++. ..+++++... .....++++++|+- + +++.++++|.+
T Consensus 154 ~g~~~~~~~al~~G~----vDa~~~~~~~~~~~~~~~~~~~~~lrvl~~s--~~~p~~~i~~~~~~~~~l~~~l~~al~~ 227 (310)
T 3n5l_A 154 NSSHEVNALAVANKQ----VDVATFNTEGMERLELTQPEKARQLKVIWKS--PLIPGDPLVWRNNLSDEQKNKLRDFFFK 227 (310)
T ss_dssp ECCHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHCHHHHTTEEEEEEE--EEEECCEEEEETTSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCC----ccEEEecchhHHHHHHhCccchhCEEEEEEC--CCCCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 456778899995555 999999999888888764 1357777654 33456789999994 4 99999999999
Q ss_pred HhhcCchhHHHHHhc
Q 041608 369 LREEGTLTKIENEWF 383 (448)
Q Consensus 369 l~e~G~l~~l~~kw~ 383 (448)
+.++|...++.+++-
T Consensus 228 ~~~d~~~~~~l~~~g 242 (310)
T 3n5l_A 228 YGANAEQKKVLADLQ 242 (310)
T ss_dssp CCCSHHHHHHHHHTT
T ss_pred cCCChhHHHHHHhcC
Confidence 999999888887764
No 41
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=97.79 E-value=1e-05 Score=79.48 Aligned_cols=52 Identities=17% Similarity=0.487 Sum_probs=47.1
Q ss_pred CccceeeeeeeeEEe-e-CCcccCCCCEEEEEecCCceEEEEEEcCCCCCccccc
Q 041608 1 IINSRFTSLSGNFQL-V-DGKLTSSGAFEIVNVIGKTLKRVGFWSPITRISKEMN 53 (448)
Q Consensus 1 ~~~~~~~G~tg~~~f-~-~g~~~~~~~~~i~~~~~~~~~~~g~W~~~~g~~~~~~ 53 (448)
|++++|+|+||++.| + +|++.++ .++|++++++++++||+|++..|+.+...
T Consensus 332 l~~~~~~G~tG~i~fd~~~G~~~~~-~~~i~~~~~~~~~~vG~w~~~~g~~~~~~ 385 (395)
T 3h6g_A 332 IKEAHWEGLTGRITFNKTNGLRTDF-DLDVISLKEEGLEKIGTWDPASGLNMTES 385 (395)
T ss_dssp HHHCEEEETTEEEECCTTTSEECCC-CEEEEEEETTEEEEEEEEETTTEECCCC-
T ss_pred HhcCCCcCcceeeEecCCCCeecCC-eEEEEEeccCCceEEEEEcCCCCccccCC
Confidence 356799999999999 7 9999999 99999999999999999999999987644
No 42
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=97.79 E-value=2.9e-05 Score=69.87 Aligned_cols=92 Identities=12% Similarity=0.064 Sum_probs=63.1
Q ss_pred cceeeecCCcHHhhhhcCCCCccccccc-CCHHHHHHHhccCccCCceEEEEc--chhhHHHHHHcCCCceEEeCCCc--
Q 041608 267 DNIGSQLGSVVPGALSNLNFKDSRLKKY-NSTKEYANALSKESKNGGISAIID--EMPYIKAFLAKYSAHYTLTAPKN-- 341 (448)
Q Consensus 267 ~~v~~~~~s~~~~~l~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~a~i~--~~~~~~y~~~~~c~~l~~v~~~~-- 341 (448)
++||+..||.-+..+.+..+...++..+ .+..+.+++|.+|+ +||+++ |.+... .+. ++....-..
T Consensus 113 krVGvd~gS~dq~~lt~~~~~g~~Ve~ve~~y~~~i~~L~~G~----IDA~Iwn~d~~~a~----~~~-~l~~~~l~~~~ 183 (231)
T 2ozz_A 113 KRVGLDSRSADQKIMTDVFFGDSDVERVDLSYHESLQRIVKGD----VDAVIWNVVAENEL----TML-GLEATPLTDDP 183 (231)
T ss_dssp CEEEECTTCHHHHHHHHHHHTTSCCEEEECCHHHHHHHHHHTS----CCEEEEEC-CHHHH----HHT-TEEEEECCSCH
T ss_pred EEEEecCCChhHHHHHhhhcCCCeEEEEECCHHHHHHHHHcCC----ccEEEEcCcchhhh----cCC-Ccceecccccc
Confidence 5899999999888886544444455677 88899999996665 999999 777665 222 333222210
Q ss_pred -cCCCCCeeEEEecCCc-cHHHHHHHHH
Q 041608 342 -TNSTNGFGFVFQKGSS-LVHDISKAIA 367 (448)
Q Consensus 342 -~~~~~~~~~a~~k~sp-l~~~in~~il 367 (448)
........++++||++ +++.+|++|.
T Consensus 184 ~~~~~~eavI~v~k~n~~L~~~ln~~I~ 211 (231)
T 2ozz_A 184 RFLQATEAVVLTRVDDYPMQQLLRAVVD 211 (231)
T ss_dssp HHHHTTCEEEEEETTCHHHHHHHHHHCC
T ss_pred ccccCCceEEEEECCCHHHHHHHHHHhH
Confidence 0233455699999976 9999998764
No 43
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=97.61 E-value=6.9e-05 Score=71.60 Aligned_cols=85 Identities=7% Similarity=0.001 Sum_probs=66.9
Q ss_pred ccCCHHHHHHHhccCccCCceEEEEcchhhHHHHHHcC---CCceEEeCCCccCCCCCeeEEEecCC-c-cHHHHHHHHH
Q 041608 293 KYNSTKEYANALSKESKNGGISAIIDEMPYIKAFLAKY---SAHYTLTAPKNTNSTNGFGFVFQKGS-S-LVHDISKAIA 367 (448)
Q Consensus 293 ~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~y~~~~~---c~~l~~v~~~~~~~~~~~~~a~~k~s-p-l~~~in~~il 367 (448)
.+.+..+.+.+|..|+ +|+.+.+...+..+.++. ..+++++... .....++++++|+- + +++.++++|.
T Consensus 162 ~~~~~~~a~~al~~G~----vDa~~~~~~~~~~~~~~~p~~~~~lrvl~~s--~~~p~~~i~~~k~~~~~l~~~l~~aL~ 235 (321)
T 3p7i_A 162 VNAGHETNALAVANKQ----VDVATNNTENLDKLKTSAPEKLKELKVIWKS--PLIPGDPIVWRKNLSETTKDKIYDFFM 235 (321)
T ss_dssp EECCHHHHHHHHHTTS----SSEEEEEHHHHHTHHHHCHHHHTTEEEEEEC--SCBCCCEEEEETTSCHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHCCC----ceEEEechHHHHHHHHhCcchhccEEEEEEc--CCCCCCceeeeCCCCHHHHHHHHHHHH
Confidence 3556788899995555 999999998888887753 2367877765 44566899999994 4 9999999999
Q ss_pred hHhhcCchhHHHHHhc
Q 041608 368 RLREEGTLTKIENEWF 383 (448)
Q Consensus 368 ~l~e~G~l~~l~~kw~ 383 (448)
++.++|...++.+++-
T Consensus 236 ~~~~d~~~~~~l~~~g 251 (321)
T 3p7i_A 236 NYGKTPEEKAVLERLG 251 (321)
T ss_dssp HTTCSHHHHHHHHHHT
T ss_pred hcCCCHHHHHHHHhcC
Confidence 9999998888777653
No 44
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=97.38 E-value=8.4e-05 Score=72.99 Aligned_cols=53 Identities=11% Similarity=0.243 Sum_probs=39.6
Q ss_pred CccceeeeeeeeEEeeCCcccCCCCEEEEEecCCceEEEEEEcCCCCCccccc
Q 041608 1 IINSRFTSLSGNFQLVDGKLTSSGAFEIVNVIGKTLKRVGFWSPITRISKEMN 53 (448)
Q Consensus 1 ~~~~~~~G~tg~~~f~~g~~~~~~~~~i~~~~~~~~~~~g~W~~~~g~~~~~~ 53 (448)
|++++|+|+||+|.|++......+.|+|+|+.++|+++||+|++..|++....
T Consensus 330 l~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g~~~~~~ 382 (389)
T 3o21_A 330 LKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKAGYWNEYERFVPFSG 382 (389)
T ss_dssp HHTCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTTEEECC--
T ss_pred HHhCcccccceeeeeCCCCCcccceEEEEEEcCCCceeeeEEcCCCCccccCC
Confidence 46789999999999910000000099999999999999999999999987643
No 45
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=97.25 E-value=0.00025 Score=70.47 Aligned_cols=43 Identities=12% Similarity=0.310 Sum_probs=38.7
Q ss_pred CccceeeeeeeeEEeeCCcccCCCCEEEEEecCCceEEEEEEcCC
Q 041608 1 IINSRFTSLSGNFQLVDGKLTSSGAFEIVNVIGKTLKRVGFWSPI 45 (448)
Q Consensus 1 ~~~~~~~G~tg~~~f~~g~~~~~~~~~i~~~~~~~~~~~g~W~~~ 45 (448)
|++++|+|+||++.|++|.+. . .|+|+++++.+++.||.|++.
T Consensus 362 l~~~~f~G~tG~v~f~~Gd~~-~-~~~I~~~~~g~~~~VG~~~~~ 404 (433)
T 4f11_A 362 MNETNFFGVTGQVVFRNGERM-G-TIKFTQFQDSREVKVGEYNAV 404 (433)
T ss_dssp HHTCEEEETTEEEEEETTEEE-C-EEEEEEEETTEEEEEEEEETT
T ss_pred HHhcEEEccceEEEEecCcee-e-eEEEEEEECCceEEEEEEECC
Confidence 467899999999999889987 6 999999999889999999864
No 46
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=96.84 E-value=0.0017 Score=64.28 Aligned_cols=45 Identities=13% Similarity=0.327 Sum_probs=37.9
Q ss_pred CccceeeeeeeeEEe-eCCcccCCCCEEEEEe--cCCceEEEEEEcCCCC
Q 041608 1 IINSRFTSLSGNFQL-VDGKLTSSGAFEIVNV--IGKTLKRVGFWSPITR 47 (448)
Q Consensus 1 ~~~~~~~G~tg~~~f-~~g~~~~~~~~~i~~~--~~~~~~~~g~W~~~~g 47 (448)
|++++|+|++|.+.| ++|.+. . .|+|+++ .+..+..||.|++..+
T Consensus 352 l~~~~f~g~~G~v~fd~~g~~~-~-~~~i~~~~~~~g~~~~vg~~~~~~~ 399 (435)
T 1dp4_A 352 MWNRSFQGVTGYLKIDRNGDRD-T-DFSLWDMDPETGAFRVVLNYNGTSQ 399 (435)
T ss_dssp TTTEEEEETTEEEEECTTSBBC-C-CEEEEEECTTTCCEEEEEEECTTTC
T ss_pred HhCceeeccceeEEECCCCCcc-c-eeEEEEecCCCCcEEEEEEecCCCc
Confidence 578899999999999 889987 6 8999999 3344899999987653
No 47
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=96.14 E-value=0.004 Score=61.79 Aligned_cols=45 Identities=16% Similarity=0.324 Sum_probs=37.6
Q ss_pred CccceeeeeeeeEEe-eCCcccCCCCEEEEEecC--C-ceEEEEEEcCCCC
Q 041608 1 IINSRFTSLSGNFQL-VDGKLTSSGAFEIVNVIG--K-TLKRVGFWSPITR 47 (448)
Q Consensus 1 ~~~~~~~G~tg~~~f-~~g~~~~~~~~~i~~~~~--~-~~~~~g~W~~~~g 47 (448)
|++++|+|++|.+.| ++|.+. . .|+|++++. + .++.||.|++..+
T Consensus 349 l~~~~f~g~~G~v~fd~~Gd~~-~-~~~I~~~~~~~~g~~~~VG~~~~~~~ 397 (441)
T 1jdp_A 349 TWNRTFEGIAGQVSIDANGDRY-G-DFSVIAMTDVEAGTQEVIGDYFGKEG 397 (441)
T ss_dssp HSSEEEEETTEEEEECTTSBBC-C-EEEEEEEEETTTTEEEEEEEEETTTT
T ss_pred HhCCeeECCccceEECCCCCcc-c-cEEEEecccCCCCceEEEEEEcCCCC
Confidence 467899999999999 899886 6 899999863 3 3789999998754
No 48
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=95.10 E-value=0.15 Score=47.51 Aligned_cols=113 Identities=12% Similarity=0.113 Sum_probs=67.5
Q ss_pred cceeeecCCcHHhh----hhcCCCCccccc-ccCCHHHHHHHhccCccCCceEEEEcchhhHHHHHHcCCCceEEeCCCc
Q 041608 267 DNIGSQLGSVVPGA----LSNLNFKDSRLK-KYNSTKEYANALSKESKNGGISAIIDEMPYIKAFLAKYSAHYTLTAPKN 341 (448)
Q Consensus 267 ~~v~~~~~s~~~~~----l~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~y~~~~~c~~l~~v~~~~ 341 (448)
+++++..|+..+.. +++.+.....+. .+.+..+..+++.+|+ +||++...+...+...+. .++++....
T Consensus 106 k~i~~~~gs~~~~~l~~~l~~~Gl~~~~v~~~~~~~~~~~~al~~G~----vDa~~~~~~~~~~~~~~~--~~~~l~~~~ 179 (308)
T 2x26_A 106 HKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQGN----VDAWAIWDPYYSAALLQG--GVRVLKDGT 179 (308)
T ss_dssp SEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTTS----SSEEEEETTHHHHHHHHS--SEEEEEEST
T ss_pred CEEeeeCCCcHHHHHHHHHHHcCCCHHHeEEEecChHHHHHHHHcCC----CCEEEecchhHHHHHhcC--CcEEEecCC
Confidence 89999877766544 344555433332 3456778889995555 999998888887766553 344443210
Q ss_pred cCCCCCeeEEEe----cCCc-cHHHHHHHHHh----HhhcC-chhHHHHHhccc
Q 041608 342 TNSTNGFGFVFQ----KGSS-LVHDISKAIAR----LREEG-TLTKIENEWFID 385 (448)
Q Consensus 342 ~~~~~~~~~a~~----k~sp-l~~~in~~il~----l~e~G-~l~~l~~kw~~~ 385 (448)
.+......+++. +..| +...|++++.+ +.+++ ...++..+|++.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~al~~a~~~~~~~~~~~~~~~~~~~~~ 233 (308)
T 2x26_A 180 DLNQTGSFYLAARPYAEKNGAFIQGVLATFSEADALTRSQREQSIALLAKTMGL 233 (308)
T ss_dssp TSCCCCEEEEEEHHHHHHTHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTC
T ss_pred CcCCcceEEEEcHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhCc
Confidence 032222233443 3345 88888888876 34443 455666677653
No 49
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=94.57 E-value=0.26 Score=46.91 Aligned_cols=97 Identities=11% Similarity=0.000 Sum_probs=55.1
Q ss_pred cceeeecCCcHHhh----hhcCCCCccccccc-CCHHHHHHHhccCccCCceEEEEcchhhHHHHHHcCCCceEEeCCCc
Q 041608 267 DNIGSQLGSVVPGA----LSNLNFKDSRLKKY-NSTKEYANALSKESKNGGISAIIDEMPYIKAFLAKYSAHYTLTAPKN 341 (448)
Q Consensus 267 ~~v~~~~~s~~~~~----l~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~y~~~~~c~~l~~v~~~~ 341 (448)
++||+..|+..+.. |+..+.....+... -+..+...+|.+|+ +||++...+.... .+..-.........
T Consensus 120 k~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~~~~~~~~al~~G~----vDa~~~~~~~~~~-~~~g~~~~l~~~~~- 193 (348)
T 3uif_A 120 KKIALHRGRPWELAFSNLLQSEGLTFKDFKIVNVNPQVGAAALASGT----VDGFFSLFDSYIL-EDRGVGKIIWSTKT- 193 (348)
T ss_dssp SEEEECTTSTHHHHHHHHHHHTTCCGGGSEEECCCHHHHHHHHHHTS----SSEEEESTTHHHH-HHTTSEEEEEEGGG-
T ss_pred CEEEecCCChHHHHHHHHHHHcCCCHHHeEEEECCHHHHHHHHHcCC----CCEEEechHHHHH-HhcCCcEEEEeccc-
Confidence 99999888876443 44455543333322 25678889996655 9999888776543 23221011111111
Q ss_pred cC---CCCCeeEEEecC----Cc-cHHHHHHHHHhHh
Q 041608 342 TN---STNGFGFVFQKG----SS-LVHDISKAIARLR 370 (448)
Q Consensus 342 ~~---~~~~~~~a~~k~----sp-l~~~in~~il~l~ 370 (448)
. .....+++++++ .| ....|.+++.+..
T Consensus 194 -~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~~a~ 229 (348)
T 3uif_A 194 -APVDWKLMGGVWARNDFVKQNPEITQAIVTAYLKSV 229 (348)
T ss_dssp -SCGGGSCCEEEEEEHHHHHHCHHHHHHHHHHHHHHH
T ss_pred -cCCCCcceeEEEECHHHHHHCHHHHHHHHHHHHHHH
Confidence 2 123456777775 55 6666666665543
No 50
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=93.97 E-value=0.1 Score=41.68 Aligned_cols=57 Identities=16% Similarity=0.278 Sum_probs=42.9
Q ss_pred HHHHHHhhhhccccCCCCCCCcccchhhHHHHHHHHhhhcc-cc-cccccccchhhhhhhhhh
Q 041608 203 LLTSFVMWIIERPVNDEFQGSRAHQFGMIFWYSFSTLVFSQ-RE-KLFSNLSKFVVIVWLFVL 263 (448)
Q Consensus 203 ~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~w~~~~~l~~q~-~~-~~~s~s~Ri~~~~W~~~~ 263 (448)
++.+.+++.+|+..+ ++...++.+++|+++.+++.-| ++ .|.+..+|+++.+|+++.
T Consensus 41 ~~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~G 99 (122)
T 2ih3_C 41 LAGSYLAVLAERGAP----GAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAG 99 (122)
T ss_dssp HHHHHHHHHHHTTST----TCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHhhheeeecCC----CCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHH
Confidence 445666777776432 2233479999999999999766 65 589999999999988765
No 51
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=93.90 E-value=0.062 Score=55.02 Aligned_cols=46 Identities=17% Similarity=0.398 Sum_probs=36.8
Q ss_pred Cccceee------eeeee-EEe-eCCcccCCCCEEEEEecC-C---ceEEEEEEcCCCCCcc
Q 041608 1 IINSRFT------SLSGN-FQL-VDGKLTSSGAFEIVNVIG-K---TLKRVGFWSPITRISK 50 (448)
Q Consensus 1 ~~~~~~~------G~tg~-~~f-~~g~~~~~~~~~i~~~~~-~---~~~~~g~W~~~~g~~~ 50 (448)
|++++|+ |.+|. +.| ++|.+. . .|+|+|+.. + .+.+||.|++ .|.+
T Consensus 411 L~~v~f~~~~~~~g~~G~~v~fd~~Gd~~-~-~y~I~~~~~~~g~~~~~~VG~~~~--~l~i 468 (555)
T 2e4u_A 411 LLKIQFTAPFNPNKGADSIVKFDTFGDGM-G-RYNVFNLQQTGGKYSYLKVGHWAE--TLSL 468 (555)
T ss_dssp TTCEEECCSSSCCSSSCCEEECCTTSCCC-C-CEEEEEEECTTSSCEEEEEEEESS--SEEC
T ss_pred HhceeecccccccCCCCCeEEEcCCCCcc-c-eEEEEEEEecCCcEEEEEEEEecc--eEEE
Confidence 6788999 99998 999 889875 6 899999952 2 3788999984 4444
No 52
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=93.55 E-value=0.042 Score=42.60 Aligned_cols=59 Identities=14% Similarity=0.038 Sum_probs=44.3
Q ss_pred HHHHHHHHhhhhccccCCCCCCCcccchhhHHHHHHHHhhhcc-cc-cccccccchhhhhhhhhh
Q 041608 201 LFLLTSFVMWIIERPVNDEFQGSRAHQFGMIFWYSFSTLVFSQ-RE-KLFSNLSKFVVIVWLFVL 263 (448)
Q Consensus 201 ~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~w~~~~~l~~q~-~~-~~~s~s~Ri~~~~W~~~~ 263 (448)
.+++.+++++.+|+..+ +....++.+++|+++.+++.-| ++ .|.+..+|+++.+|+++.
T Consensus 18 ~~~~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G 78 (103)
T 2k1e_A 18 VLEEASKKAVEAERGAP----GAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAG 78 (103)
T ss_dssp HHHHHHHHHHHHHTTST----TCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHH
T ss_pred HHHHHHHhhhhhccCCC----CcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHH
Confidence 34455667778887643 2233478999999999999766 65 589999999999998765
No 53
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=93.22 E-value=0.17 Score=41.35 Aligned_cols=57 Identities=18% Similarity=0.289 Sum_probs=41.7
Q ss_pred HHHHHHhhhhccccCCCCCCCcccchhhHHHHHHHHhhhcc-cc-cccccccchhhhhhhhhh
Q 041608 203 LLTSFVMWIIERPVNDEFQGSRAHQFGMIFWYSFSTLVFSQ-RE-KLFSNLSKFVVIVWLFVL 263 (448)
Q Consensus 203 ~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~w~~~~~l~~q~-~~-~~~s~s~Ri~~~~W~~~~ 263 (448)
++.+++++.+++.. .++...++.+++||++.+++.-| |+ .|.+..+|+++.+|+++.
T Consensus 20 ~~~a~~~~~~e~~~----~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G 78 (139)
T 3eff_K 20 LAGSYLAVLAERGA----PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAG 78 (139)
T ss_dssp HHHHHHHHHTTSSC----TTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC----CCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHH
Confidence 34455566666543 22233578999999999998766 55 689999999999998765
No 54
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=92.37 E-value=0.24 Score=41.37 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=42.8
Q ss_pred HHHHHHHhhhhccccCCCCCCCcccchhhHHHHHHHHhhhcc-cc-cccccccchhhhhhhhhh
Q 041608 202 FLLTSFVMWIIERPVNDEFQGSRAHQFGMIFWYSFSTLVFSQ-RE-KLFSNLSKFVVIVWLFVL 263 (448)
Q Consensus 202 ~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~w~~~~~l~~q~-~~-~~~s~s~Ri~~~~W~~~~ 263 (448)
+++.+++++.+|+..+ ++.-.++.+++|+++.+++.-| ++ .|.+..+|+++.+|+++.
T Consensus 63 i~~~a~~~~~~E~~~~----~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~G 122 (155)
T 2a9h_A 63 LLAGSYLAVLAERGAP----GAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAG 122 (155)
T ss_dssp HHHHHHHHHHHHTTSS----CSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCC----CCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHH
Confidence 3445556777776532 2223469999999999999766 55 589999999999988765
No 55
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=91.75 E-value=0.32 Score=45.10 Aligned_cols=47 Identities=11% Similarity=0.018 Sum_probs=28.3
Q ss_pred cceeeecCCcHHhhh----hcCCCCcccccccCCHHHHHHHhccCccCCceEEEE
Q 041608 267 DNIGSQLGSVVPGAL----SNLNFKDSRLKKYNSTKEYANALSKESKNGGISAII 317 (448)
Q Consensus 267 ~~v~~~~~s~~~~~l----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i 317 (448)
++||+..+++.+.++ ++.+.....+.......+.+.++.+|+ +||++
T Consensus 107 k~i~~~~~~~~~~~~~~~l~~~Gl~~~~v~~~~~~~~~~~al~~G~----vDa~~ 157 (302)
T 3ix1_A 107 LTVGYPGIPVNEPILKTMVEAAGGDYEQVHLMDVGFELGASIVSGR----ADAVV 157 (302)
T ss_dssp SEEEECSCTTHHHHHHHHHHHTTCCGGGCEEEECTTCHHHHHHHSS----SSEEE
T ss_pred CEEEeCCCcchHHHHHHHHHHcCCCHHHeEEEecCccHHHHHhCCC----CCEEE
Confidence 999998887654433 445554433433332345677885555 99987
No 56
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=91.31 E-value=1.2 Score=41.65 Aligned_cols=83 Identities=18% Similarity=0.114 Sum_probs=49.7
Q ss_pred cceeeecCCcHHhh----hhcCCCCcccccc-cCCHHHHHHHhccCccCCceEEEEcchhhHHHHHHcCCCceEEeCCCc
Q 041608 267 DNIGSQLGSVVPGA----LSNLNFKDSRLKK-YNSTKEYANALSKESKNGGISAIIDEMPYIKAFLAKYSAHYTLTAPKN 341 (448)
Q Consensus 267 ~~v~~~~~s~~~~~----l~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~y~~~~~c~~l~~v~~~~ 341 (448)
++|++..|+..... +++.+.....+.. ..+..+...+|.+|+ +||++...+.......+.-.+.......
T Consensus 132 k~i~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~~~~~~~~al~~G~----vDa~~~~~p~~~~~~~~~~~~~l~~~~~- 206 (324)
T 3ksx_A 132 KRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYLSPANARAAFAAGQ----VDAWAIWDPWYSALTLDGSARLLANGEG- 206 (324)
T ss_dssp CEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTTC----CSEEEEETTHHHHHHHTTSEEEEEESTT-
T ss_pred CEEEecCCChHHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHcCC----CCEEEEccHHHHHHHhcCCcEEEecccc-
Confidence 89999887765443 3445554433322 226788899996555 9999888887777665542122222333
Q ss_pred cCCCCCeeEEEecC
Q 041608 342 TNSTNGFGFVFQKG 355 (448)
Q Consensus 342 ~~~~~~~~~a~~k~ 355 (448)
+......++++++
T Consensus 207 -~~~~~~~~~~~~~ 219 (324)
T 3ksx_A 207 -LGLTGGFFLSSRR 219 (324)
T ss_dssp -SCCCCEEEEEEHH
T ss_pred -cCCCccEEEECHH
Confidence 4444455666654
No 57
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=91.11 E-value=0.95 Score=42.73 Aligned_cols=112 Identities=14% Similarity=0.063 Sum_probs=68.6
Q ss_pred cceeeecCCcHHh-----hhhcCCCCcc--cccccCCHHHHHHHhccCccCCceEEEEcchhhHHHHHHcCCCceEEeCC
Q 041608 267 DNIGSQLGSVVPG-----ALSNLNFKDS--RLKKYNSTKEYANALSKESKNGGISAIIDEMPYIKAFLAKYSAHYTLTAP 339 (448)
Q Consensus 267 ~~v~~~~~s~~~~-----~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~y~~~~~c~~l~~v~~ 339 (448)
++||+..+++... +|++.+.... +++.+ +..+...+|.+|+ +||++...++......+..........
T Consensus 155 k~i~v~~~~s~~~~~~~~~l~~~Gl~~~dv~~~~~-~~~~~~~al~~G~----vDa~~~~~p~~~~~~~~~~~~~l~~~~ 229 (341)
T 3un6_A 155 YHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEM-SPAEMPAALSEHR----ITGYSVAEPFGALGEKLGKGKTLKHGD 229 (341)
T ss_dssp EEEEESCSSSHHHHHHHHHHHHTTCCTTSEEEEEC-CGGGHHHHHHTTS----CSEEEEETTHHHHHHHSSCCEEEEEGG
T ss_pred CEEEECCCCCHHHHHHHHHHHHcCCCHHHeEEEEc-ChHHHHHHHHcCC----CCEEEecCCHHHHHHhcCCeEEEEecc
Confidence 9999987655443 3444555432 33333 4567889995555 999999888887776665323222222
Q ss_pred CccCCC--CCeeEEEecC----Cc-----cHHHHHHHHHhHhhcCchhHHHHHhccc
Q 041608 340 KNTNST--NGFGFVFQKG----SS-----LVHDISKAIARLREEGTLTKIENEWFID 385 (448)
Q Consensus 340 ~~~~~~--~~~~~a~~k~----sp-----l~~~in~~il~l~e~G~l~~l~~kw~~~ 385 (448)
. +.. ....++++++ .| +.+.+++++..+.+++.-.++..+|++.
T Consensus 230 ~--~~~~~~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~ 284 (341)
T 3un6_A 230 D--VIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFKQ 284 (341)
T ss_dssp G--TSTTCCCEEEEECHHHHHHCHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSSS
T ss_pred c--cCCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhCc
Confidence 2 322 2356776654 44 6666777777777776544777777764
No 58
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=90.79 E-value=0.11 Score=52.43 Aligned_cols=41 Identities=27% Similarity=0.534 Sum_probs=32.2
Q ss_pred Cccceeeeeee-eEEe-eCCcccCCCCEEEEEecC--Cc---eEEEEEEc
Q 041608 1 IINSRFTSLSG-NFQL-VDGKLTSSGAFEIVNVIG--KT---LKRVGFWS 43 (448)
Q Consensus 1 ~~~~~~~G~tg-~~~f-~~g~~~~~~~~~i~~~~~--~~---~~~~g~W~ 43 (448)
|++++|++.+| .+.| ++|... . .|||+|... +| +.+||.|+
T Consensus 427 Lk~v~f~~~~g~~v~fd~~gd~~-~-~YdI~n~~~~~~~~~~~~~VG~~~ 474 (496)
T 3ks9_A 427 LIKSSFIGVSGEEVWFDEKGDAP-G-RYDIMNLQYTEANRYDYVHVGTWH 474 (496)
T ss_dssp HHTCEEECTTSCEEECCTTSCCC-C-EEEEEEEEECC--CEEEEEEEEEE
T ss_pred HHhcCCcCCCCCEEEECCCCCcc-c-eEEEEEEEECCCCCEEEEEEEEEe
Confidence 57899999999 5888 777764 5 899999863 33 57899997
No 59
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=90.45 E-value=0.19 Score=50.30 Aligned_cols=47 Identities=17% Similarity=0.394 Sum_probs=35.2
Q ss_pred Cccceeeee-------eeeEEe-eCCcccCCCCEEEEEecC-C---ceEEEEEEcCCCCCccc
Q 041608 1 IINSRFTSL-------SGNFQL-VDGKLTSSGAFEIVNVIG-K---TLKRVGFWSPITRISKE 51 (448)
Q Consensus 1 ~~~~~~~G~-------tg~~~f-~~g~~~~~~~~~i~~~~~-~---~~~~~g~W~~~~g~~~~ 51 (448)
|++++|++. .+.+.| ++|.+. . .|||+|... + .+.+||.|+ ..|.+.
T Consensus 410 Lk~v~F~~~~~~~~~~g~~v~fd~~G~~~-~-~YdI~n~~~~~~~~~~~~VG~~~--~~l~i~ 468 (479)
T 3sm9_A 410 LLKINFTAPFNPNKDADSIVKFDTFGDGM-G-RYNVFNFQNVGGKYSYLKVGHWA--ETLSLD 468 (479)
T ss_dssp GGGCCEECTTC-----CCEECCCTTCBCC-C-CEEEEEEEESSSCEEEEEEEEES--SSEEEC
T ss_pred hcceeeccccCccccCCCeEEECCCCCcc-c-ceEEEEEEECCCcEEEEEEEEEe--ceEEEe
Confidence 678999987 557899 888874 5 899999873 2 257899997 345443
No 60
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=90.20 E-value=0.27 Score=47.33 Aligned_cols=52 Identities=8% Similarity=0.012 Sum_probs=42.0
Q ss_pred CccceeeeeeeeEEe-eCCcccCCCCEEEEEec-CCceEEEEEEcCCCCCccccc
Q 041608 1 IINSRFTSLSGNFQL-VDGKLTSSGAFEIVNVI-GKTLKRVGFWSPITRISKEMN 53 (448)
Q Consensus 1 ~~~~~~~G~tg~~~f-~~g~~~~~~~~~i~~~~-~~~~~~~g~W~~~~g~~~~~~ 53 (448)
|++++|+|++|.+.| +++++... ...|..++ ..|...++.|++..|......
T Consensus 315 l~~~~~~g~~G~i~f~~~~~~~~~-~~~i~~~~~~~g~~~i~~w~~~~~~~~~p~ 368 (387)
T 3i45_A 315 LKDMAFSTPMGPLSFRASDHQSTM-GAWVGRTALRDGKGVMVDWRYVDGGSVLPP 368 (387)
T ss_dssp TTTCEEEETTEEEEBCTTTCBBCC-CEEEEEEEEETTEEEEEEEEEECGGGGSCC
T ss_pred HhcCCCcCCCCCeEEcCCCCcccc-ceeEEEEEeeCCceeEEeeEEeCchhcCCC
Confidence 567899999999999 66777777 78888876 567788999998888766543
No 61
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=87.59 E-value=0.8 Score=37.24 Aligned_cols=37 Identities=5% Similarity=0.244 Sum_probs=32.2
Q ss_pred chhhHHHHHHHHhhhcc-cc-cccccccchhhhhhhhhh
Q 041608 227 QFGMIFWYSFSTLVFSQ-RE-KLFSNLSKFVVIVWLFVL 263 (448)
Q Consensus 227 ~~~~~~w~~~~~l~~q~-~~-~~~s~s~Ri~~~~W~~~~ 263 (448)
++.+++|+++.+++.-| |+ .|.+..+|+++.+|+++.
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g 81 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFG 81 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHH
Confidence 58999999999999766 66 689999999999998775
No 62
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=86.16 E-value=1.5 Score=32.02 Aligned_cols=37 Identities=8% Similarity=0.255 Sum_probs=31.3
Q ss_pred chhhHHHHHHHHhhhcc-cc-cccccccchhhhhhhhhh
Q 041608 227 QFGMIFWYSFSTLVFSQ-RE-KLFSNLSKFVVIVWLFVL 263 (448)
Q Consensus 227 ~~~~~~w~~~~~l~~q~-~~-~~~s~s~Ri~~~~W~~~~ 263 (448)
++.+++|+++.++..-| ++ .|.+..+|++...+.++.
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G 66 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLG 66 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHH
Confidence 58899999999999866 55 589999999999887654
No 63
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=84.65 E-value=3.3 Score=38.69 Aligned_cols=88 Identities=15% Similarity=0.153 Sum_probs=60.8
Q ss_pred ccccCCHHHHHHHhccCccCCceEEEEcchhhHHHHHHcC-CCceEEeC--------CCccCCC---------CCeeEEE
Q 041608 291 LKKYNSTKEYANALSKESKNGGISAIIDEMPYIKAFLAKY-SAHYTLTA--------PKNTNST---------NGFGFVF 352 (448)
Q Consensus 291 ~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~y~~~~~-c~~l~~v~--------~~~~~~~---------~~~~~a~ 352 (448)
.+.|....+.+.+|..|+ +|+++.+...+..+++.. ..-|.+.+ +.+++.. ..++++.
T Consensus 168 ~Vpy~G~~~a~~aL~~G~----VD~~~~~~~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~a 243 (312)
T 2f5x_A 168 TIPYKGTAPAMNDLLGKQ----VDLMCDQTTNTTQQITSGKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWA 243 (312)
T ss_dssp EEECSSHHHHHHHHHTTS----SCEEEEEHHHHHHHHHTTSSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEE
T ss_pred EeccCChHHHHHHHHcCC----ccEEEechHHHHHHHHcCCeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEE
Confidence 467899999999995555 999998877766666542 21122221 1111211 1268899
Q ss_pred ecCCc--cHHHHHHHHHhHhhcCchhHHHHHh
Q 041608 353 QKGSS--LVHDISKAIARLREEGTLTKIENEW 382 (448)
Q Consensus 353 ~k~sp--l~~~in~~il~l~e~G~l~~l~~kw 382 (448)
|+|-| +.+.+++++.++.+++.+++..+++
T Consensus 244 p~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~ 275 (312)
T 2f5x_A 244 PKGTPKPVVDKLVKSLQAGLADPKFQERMKQL 275 (312)
T ss_dssp ETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 99965 9999999999999998877766554
No 64
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=84.29 E-value=4.3 Score=37.71 Aligned_cols=60 Identities=22% Similarity=0.206 Sum_probs=40.1
Q ss_pred cceeee-cCCcHHhh----hhcCCCCcc--cccccCCHHHHHHHhccCccCCceEEEEcchhhHHHHHHcC
Q 041608 267 DNIGSQ-LGSVVPGA----LSNLNFKDS--RLKKYNSTKEYANALSKESKNGGISAIIDEMPYIKAFLAKY 330 (448)
Q Consensus 267 ~~v~~~-~~s~~~~~----l~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~y~~~~~ 330 (448)
+++++. .|+..+.+ +++.+.... +++.+....+...+|.+|+ +||++...+.......+.
T Consensus 139 k~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G~----vDa~~~~~p~~~~~~~~g 205 (346)
T 3qsl_A 139 RKIGVTAPGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTALRSGQ----IDAISNTDPVVSMLETSG 205 (346)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHHHHTS----CSEEEEETTHHHHHHHTT
T ss_pred CEEEECCCCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHHHcCC----ccEEEecchhHHHHHhCC
Confidence 899998 67655433 344555432 3455666678889996555 999998888776655554
No 65
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=83.42 E-value=2 Score=35.24 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=32.1
Q ss_pred chhhHHHHHHHHhhhcc-cc-cccccccchhhhhhhhhh
Q 041608 227 QFGMIFWYSFSTLVFSQ-RE-KLFSNLSKFVVIVWLFVL 263 (448)
Q Consensus 227 ~~~~~~w~~~~~l~~q~-~~-~~~s~s~Ri~~~~W~~~~ 263 (448)
++.+++|+++.+++.-| |+ .|.+..+|+++.+|.++.
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g 90 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIG 90 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHH
Confidence 68999999999999876 65 588999999999998765
No 66
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=82.37 E-value=2.3 Score=37.46 Aligned_cols=57 Identities=18% Similarity=0.269 Sum_probs=40.5
Q ss_pred HHHHHHhhhhccccCCCCCCCcccchhhHHHHHHHHhhhcc-cc-cccccccchhhhhhhhhh
Q 041608 203 LLTSFVMWIIERPVNDEFQGSRAHQFGMIFWYSFSTLVFSQ-RE-KLFSNLSKFVVIVWLFVL 263 (448)
Q Consensus 203 ~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~w~~~~~l~~q~-~~-~~~s~s~Ri~~~~W~~~~ 263 (448)
++.+++++.+|+..+ ++...++.+++|+++.+++.-| |+ .|.+..+|+++.+++++.
T Consensus 145 ~~~~~~~~~~e~~~~----~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G 203 (223)
T 1orq_C 145 LYGAFAIYIVEYPDP----NSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTG 203 (223)
T ss_dssp HHHHHHHHHTTSSST----TCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCc----CCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHH
Confidence 344555666665322 1223479999999999999766 55 588999999998887764
No 67
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=81.78 E-value=2.4 Score=33.16 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=31.6
Q ss_pred chhhHHHHHHHHhhhcc-cc-cccccccchhhhhhhhhh
Q 041608 227 QFGMIFWYSFSTLVFSQ-RE-KLFSNLSKFVVIVWLFVL 263 (448)
Q Consensus 227 ~~~~~~w~~~~~l~~q~-~~-~~~s~s~Ri~~~~W~~~~ 263 (448)
++.+++|+++.++..-| ++ .|.+..+|++..+|.++.
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G 87 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIG 87 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHH
Confidence 58899999999999766 55 588999999999988765
No 68
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=81.30 E-value=5 Score=37.49 Aligned_cols=88 Identities=14% Similarity=0.142 Sum_probs=61.1
Q ss_pred ccccCCHHHHHHHhccCccCCceEEEEcchhhHHHHHHcC-CCceEEeC--------CCccCCC---------CCeeEEE
Q 041608 291 LKKYNSTKEYANALSKESKNGGISAIIDEMPYIKAFLAKY-SAHYTLTA--------PKNTNST---------NGFGFVF 352 (448)
Q Consensus 291 ~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~y~~~~~-c~~l~~v~--------~~~~~~~---------~~~~~a~ 352 (448)
.+.|....+.+.+|..|+ +|+++.+......+++.. ..-|.+.+ +.+++.. ..++++.
T Consensus 172 ~Vpy~G~~~a~~al~~G~----vD~~~~~~~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~a 247 (314)
T 2dvz_A 172 HVPYKGSGPAVADAVGGQ----IELIFDNLPSSMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLA 247 (314)
T ss_dssp EEECSSHHHHHHHHHHTS----SSEEEEEHHHHHHHHHTTSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEE
T ss_pred EcccCCHHHHHHHHHcCC----ceEEEEcHHHHHHHHHcCCEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEE
Confidence 467899999999996555 999998877766555542 21122221 1111211 2368899
Q ss_pred ecCCc--cHHHHHHHHHhHhhcCchhHHHHHh
Q 041608 353 QKGSS--LVHDISKAIARLREEGTLTKIENEW 382 (448)
Q Consensus 353 ~k~sp--l~~~in~~il~l~e~G~l~~l~~kw 382 (448)
|+|-| ..+.+++++.++.+++.+.+..+++
T Consensus 248 p~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~ 279 (314)
T 2dvz_A 248 PKGTPMDVVNKLRDAAVVALKDPKVIKALDDQ 279 (314)
T ss_dssp ETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 99965 9999999999999998877766654
No 69
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=80.78 E-value=0.16 Score=49.05 Aligned_cols=44 Identities=9% Similarity=-0.010 Sum_probs=38.4
Q ss_pred eeeeeEEe-eCCcccCCCCEEEEEecCCceEEEEEEcCCCCCcccc
Q 041608 8 SLSGNFQL-VDGKLTSSGAFEIVNVIGKTLKRVGFWSPITRISKEM 52 (448)
Q Consensus 8 G~tg~~~f-~~g~~~~~~~~~i~~~~~~~~~~~g~W~~~~g~~~~~ 52 (448)
|++|.+.| ++|++... .+.|+.+++.++..+|.|.+..++....
T Consensus 338 G~~G~i~f~~~~~~~~~-~~~i~~~~~g~~~~v~~w~~~~~~~~~~ 382 (392)
T 3lkb_A 338 KQGVEIDFTKSEHTGAE-GLRILEAKGGRFVPVTEPFTSALFRKVH 382 (392)
T ss_dssp SSSCSBCCCSSCCEEEC-CBEEEEEETTEEEECSCCBCCHHHHHHH
T ss_pred ccceeeEeCCCCcCCcc-cEEEEEEeCCEEEEeccccchhHHHhhh
Confidence 99999999 78888777 8999999988899999998887776543
No 70
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=80.64 E-value=2.9 Score=31.54 Aligned_cols=37 Identities=16% Similarity=0.271 Sum_probs=31.7
Q ss_pred chhhHHHHHHHHhhhcc-cc-cccccccchhhhhhhhhh
Q 041608 227 QFGMIFWYSFSTLVFSQ-RE-KLFSNLSKFVVIVWLFVL 263 (448)
Q Consensus 227 ~~~~~~w~~~~~l~~q~-~~-~~~s~s~Ri~~~~W~~~~ 263 (448)
++.+++|+++.++..-| ++ .|.+..+|++..+|.++.
T Consensus 32 ~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G 70 (97)
T 3ouf_A 32 RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIG 70 (97)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHH
Confidence 58899999999999866 55 688999999999998765
No 71
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=78.48 E-value=3.5 Score=38.26 Aligned_cols=86 Identities=10% Similarity=0.108 Sum_probs=60.9
Q ss_pred ccccCCHHHHHHHhccCccCCceEEEEcchhhHHHHHHcCCCceEEe---CC--------CccCC---------CCCeeE
Q 041608 291 LKKYNSTKEYANALSKESKNGGISAIIDEMPYIKAFLAKYSAHYTLT---AP--------KNTNS---------TNGFGF 350 (448)
Q Consensus 291 ~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~y~~~~~c~~l~~v---~~--------~~~~~---------~~~~~~ 350 (448)
.+.|....+.+.+|..|+ +|+++.+...+..+++.. +++.+ ++ .+++. ...+++
T Consensus 159 ~Vpy~g~~~a~~al~~G~----vD~~~~~~~~~~~~i~~g--~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl 232 (301)
T 2qpq_A 159 HVPYKGCGPALNDVLGSQ----IGLAVVTASSAIPFIKAG--KLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGL 232 (301)
T ss_dssp EEECSSHHHHHHHHHTTS----SSCEEEEHHHHHHHHHTT--SEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEE
T ss_pred EeccCChHHHHHHHHCCC----ccEEEEcHHHHHHHHhcC--CeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEE
Confidence 467899999999995555 999998877665555542 23332 11 11111 123688
Q ss_pred EEecCCc--cHHHHHHHHHhHhhcCchhHHHHHh
Q 041608 351 VFQKGSS--LVHDISKAIARLREEGTLTKIENEW 382 (448)
Q Consensus 351 a~~k~sp--l~~~in~~il~l~e~G~l~~l~~kw 382 (448)
+.|+|-| +.+.+++++.++.+++.+++..+++
T Consensus 233 ~ap~g~p~~vv~~l~~al~~~~~~~~~~~~~~~~ 266 (301)
T 2qpq_A 233 LVPGATPMAVRQKLYDGIAKVMQRDDVQKKLADL 266 (301)
T ss_dssp EEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 9999965 9999999999999998887776655
No 72
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=74.66 E-value=1.4 Score=42.28 Aligned_cols=45 Identities=11% Similarity=0.217 Sum_probs=36.8
Q ss_pred cceee--eeee-eEEe-eCCcccCCCCEEEEEe-cCCceEEEEEEcCCCCC
Q 041608 3 NSRFT--SLSG-NFQL-VDGKLTSSGAFEIVNV-IGKTLKRVGFWSPITRI 48 (448)
Q Consensus 3 ~~~~~--G~tg-~~~f-~~g~~~~~~~~~i~~~-~~~~~~~~g~W~~~~g~ 48 (448)
+.+|+ |++| .+.| ++|++... .+.|+++ ++..+..++.|+.....
T Consensus 326 ~~~~~~~G~~G~~i~f~~~~~~~~~-~~~i~~~~~~G~~~~v~~~~~~~~~ 375 (391)
T 3eaf_A 326 ANTFDLGGITADTIDYEPGFHLAYR-KVFIIKLGENGELQLMGKFEAPSQV 375 (391)
T ss_dssp HCCBCSTTCBSSCBCCBTTBCCCCC-CEEEEEECTTSSEEEEEEECCCTTC
T ss_pred hCCCCCCCccccceeeCCCCCCcce-EEEEEEEecCCEEEEeeeecCcccc
Confidence 34677 9999 9999 67788788 9999999 66679999999876543
No 73
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=73.68 E-value=5.6 Score=36.89 Aligned_cols=40 Identities=18% Similarity=0.193 Sum_probs=32.5
Q ss_pred cccchhhHHHHHHHHhhhcc-cc-cccccccchhhhhhhhhh
Q 041608 224 RAHQFGMIFWYSFSTLVFSQ-RE-KLFSNLSKFVVIVWLFVL 263 (448)
Q Consensus 224 ~~~~~~~~~w~~~~~l~~q~-~~-~~~s~s~Ri~~~~W~~~~ 263 (448)
...++.+++||++.+++.-| |+ .|.+..+|+++.++.++.
T Consensus 79 ~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G 120 (301)
T 1xl4_A 79 RPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCG 120 (301)
T ss_dssp CTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHH
Confidence 34579999999999999755 55 588999999998887664
No 74
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=73.09 E-value=0.25 Score=41.84 Aligned_cols=39 Identities=13% Similarity=0.205 Sum_probs=33.0
Q ss_pred ccchhhHHHHHHHHhhhcc-cc-cccccccchhhhhhhhhh
Q 041608 225 AHQFGMIFWYSFSTLVFSQ-RE-KLFSNLSKFVVIVWLFVL 263 (448)
Q Consensus 225 ~~~~~~~~w~~~~~l~~q~-~~-~~~s~s~Ri~~~~W~~~~ 263 (448)
..++.+++||++.+++.-| |+ .|.+..+|+++++|+++.
T Consensus 65 ~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G 105 (166)
T 3pjs_K 65 LITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAG 105 (166)
T ss_dssp CCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHH
T ss_pred cCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHH
Confidence 3478899999999998766 55 689999999999998765
No 75
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=72.89 E-value=4.6 Score=38.06 Aligned_cols=39 Identities=18% Similarity=0.200 Sum_probs=32.1
Q ss_pred ccchhhHHHHHHHHhhhcc-cc-cccccccchhhhhhhhhh
Q 041608 225 AHQFGMIFWYSFSTLVFSQ-RE-KLFSNLSKFVVIVWLFVL 263 (448)
Q Consensus 225 ~~~~~~~~w~~~~~l~~q~-~~-~~~s~s~Ri~~~~W~~~~ 263 (448)
..++.+++||++.+++.-| |+ .|.+..+|+++.++.++.
T Consensus 94 ~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G 134 (333)
T 1p7b_A 94 PPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVG 134 (333)
T ss_dssp SSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHH
T ss_pred CCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHH
Confidence 3478999999999999765 55 588889999999887664
No 76
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=68.55 E-value=3.7 Score=38.92 Aligned_cols=58 Identities=14% Similarity=0.239 Sum_probs=41.0
Q ss_pred HHHHHHHhhhhccccCCCCCCCcccchhhHHHHHHHHhhhcc-cc-cccccccchhhhhhhhhh
Q 041608 202 FLLTSFVMWIIERPVNDEFQGSRAHQFGMIFWYSFSTLVFSQ-RE-KLFSNLSKFVVIVWLFVL 263 (448)
Q Consensus 202 ~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~w~~~~~l~~q~-~~-~~~s~s~Ri~~~~W~~~~ 263 (448)
+++.+++.+.+++..+++ .-.++.+++|+++.+++.-| |+ .|.+..+|+++.+++++.
T Consensus 140 ~~~~a~~~~~~e~~~~~~----~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g 199 (355)
T 3beh_A 140 LFAVALAAYVIERDIQPE----KFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSG 199 (355)
T ss_dssp HHHHHHHHHHHHTTTCHH----HHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCc----ccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHH
Confidence 344556667777643221 11268899999999999766 55 588999999998887765
No 77
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=65.79 E-value=12 Score=35.10 Aligned_cols=37 Identities=22% Similarity=0.360 Sum_probs=30.7
Q ss_pred chhhHHHHHHHHhhhcc-cc-cccccccchhhhhhhhhh
Q 041608 227 QFGMIFWYSFSTLVFSQ-RE-KLFSNLSKFVVIVWLFVL 263 (448)
Q Consensus 227 ~~~~~~w~~~~~l~~q~-~~-~~~s~s~Ri~~~~W~~~~ 263 (448)
++.+++|+++.+++.-| |+ .|.+..+|+++.++.++.
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G 116 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVG 116 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHH
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHH
Confidence 78999999999999765 55 588999999888877654
No 78
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=64.61 E-value=3.3 Score=22.83 Aligned_cols=19 Identities=26% Similarity=0.557 Sum_probs=15.4
Q ss_pred ccchhhHHHHHHHHhhhcc
Q 041608 225 AHQFGMIFWYSFSTLVFSQ 243 (448)
Q Consensus 225 ~~~~~~~~w~~~~~l~~q~ 243 (448)
..++..++||+++.++..+
T Consensus 6 ~~~l~aa~wF~WGvllnsg 24 (27)
T 2nr1_A 6 ALTLSSAMWFSWGVLLNSG 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ceehhhhHHHhhHhheecc
Confidence 3468899999999999643
No 79
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=59.56 E-value=23 Score=22.26 Aligned_cols=18 Identities=17% Similarity=0.349 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 041608 418 SLTLALVIFLLPSIYKKN 435 (448)
Q Consensus 418 g~~lallv~~~E~~~~~~ 435 (448)
|+++.+++.++-+++.+|
T Consensus 19 Gv~~v~ii~~~~~~~~RR 36 (44)
T 2l2t_A 19 GLFILVIVGLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 343333333343333333
No 80
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=59.34 E-value=21 Score=24.45 Aligned_cols=12 Identities=17% Similarity=0.368 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 041608 416 GISLTLALVIFL 427 (448)
Q Consensus 416 ~~g~~lallv~~ 427 (448)
++|.++++++|.
T Consensus 13 vlGg~~~lll~~ 24 (70)
T 2klu_A 13 VLGGVAGLLLFI 24 (70)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHhHHHHHHHHH
Confidence 334444444443
No 81
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=59.27 E-value=19 Score=22.68 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHhccccc
Q 041608 417 ISLTLALVIFLLPSIYKKNAFWK 439 (448)
Q Consensus 417 ~g~~lallv~~~E~~~~~~~~~~ 439 (448)
+|+++.+++.+.-.+|.+||+.+
T Consensus 19 VGvll~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 19 VGILLVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHHhheehhhhh
Confidence 44444444444445555554443
No 82
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=58.73 E-value=27 Score=35.24 Aligned_cols=37 Identities=5% Similarity=0.046 Sum_probs=30.9
Q ss_pred chhhHHHHHHHHhhhcc-cc-cccccccchhhhhhhhhh
Q 041608 227 QFGMIFWYSFSTLVFSQ-RE-KLFSNLSKFVVIVWLFVL 263 (448)
Q Consensus 227 ~~~~~~w~~~~~l~~q~-~~-~~~s~s~Ri~~~~W~~~~ 263 (448)
++.+++||++.+++.-| ++ .|.+..+|+++.+|.++.
T Consensus 51 ~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g 89 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSG 89 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHH
T ss_pred chhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHH
Confidence 68999999999999766 55 478889999999887654
No 83
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=53.44 E-value=19 Score=35.98 Aligned_cols=38 Identities=11% Similarity=0.084 Sum_probs=30.6
Q ss_pred cchhhHHHHHHHHhhhcc-cc-cccccccchhhhhhhhhh
Q 041608 226 HQFGMIFWYSFSTLVFSQ-RE-KLFSNLSKFVVIVWLFVL 263 (448)
Q Consensus 226 ~~~~~~~w~~~~~l~~q~-~~-~~~s~s~Ri~~~~W~~~~ 263 (448)
.++.+++|+++.+++.-| ++ .|.+..+|+++++++++.
T Consensus 374 ~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G 413 (514)
T 2r9r_B 374 PSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAG 413 (514)
T ss_dssp SSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHH
T ss_pred cchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHH
Confidence 378999999999999766 54 578888999888877654
No 84
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=50.31 E-value=5.9 Score=38.15 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=16.9
Q ss_pred ccceeeeeeeeEEe-eCCccc
Q 041608 2 INSRFTSLSGNFQL-VDGKLT 21 (448)
Q Consensus 2 ~~~~~~G~tg~~~f-~~g~~~ 21 (448)
++++|+|++|.+.| ++|+..
T Consensus 342 ~~~~~~g~~G~i~f~~~g~~~ 362 (419)
T 3h5l_A 342 RSLIFRGPVGTMRFHADTQSA 362 (419)
T ss_dssp HHCEEEETTEEEEBCTTTCBB
T ss_pred HhCCcccCceEEEECCCCCcc
Confidence 46789999999999 888854
No 85
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=49.06 E-value=22 Score=33.67 Aligned_cols=78 Identities=13% Similarity=0.107 Sum_probs=42.1
Q ss_pred HHHHhccCccCCceEEEEcchhhHHHHHHcCCCceEEeCCCcc--CCCCCeeEEEec----CCc-cHHH----HHHHHHh
Q 041608 300 YANALSKESKNGGISAIIDEMPYIKAFLAKYSAHYTLTAPKNT--NSTNGFGFVFQK----GSS-LVHD----ISKAIAR 368 (448)
Q Consensus 300 ~~~~l~~~~~~~~~~a~i~~~~~~~y~~~~~c~~l~~v~~~~~--~~~~~~~~a~~k----~sp-l~~~----in~~il~ 368 (448)
..++|.+|+ +||++...+......+. ..+++.+... .......+++++ ..| +... +.++...
T Consensus 210 ~~~aL~~G~----vDA~~~~~p~~~~~~~~---g~~~l~~~~~~~~~~~~~~l~~~~~~~~~~p~~v~~~~~a~~~a~~~ 282 (365)
T 2de3_A 210 QAAVLASGD----VDALYSWLPWAGELQAT---GARPVVDLGLDERNAYASVWTVSSGLVRQRPGLVQRLVDAAVDAGLW 282 (365)
T ss_dssp HHHHHHSSS----CSEEEEEHHHHHHHHHT---TEEESSCGGGSGGGCEEEEEEEEHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCC----cCEEEEcchhHHHHHhC---CCEEEEeCcccCCCCceEEEEEcHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 578885555 99999887776554442 3444433200 112233666663 345 4444 5555556
Q ss_pred HhhcC-chhHHHHHhcc
Q 041608 369 LREEG-TLTKIENEWFI 384 (448)
Q Consensus 369 l~e~G-~l~~l~~kw~~ 384 (448)
+.++. ...++..++.+
T Consensus 283 ~~~~p~~~~~i~~~~~~ 299 (365)
T 2de3_A 283 ARDHSDAVTSLHAANLG 299 (365)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHHCHHHHHHHHHHHhC
Confidence 66552 44455555554
No 86
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=47.69 E-value=6.3 Score=39.06 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=25.4
Q ss_pred Cccceeeeeee-eEEe-eCCcccCCCCEEEEEecC
Q 041608 1 IINSRFTSLSG-NFQL-VDGKLTSSGAFEIVNVIG 33 (448)
Q Consensus 1 ~~~~~~~G~tg-~~~f-~~g~~~~~~~~~i~~~~~ 33 (448)
|++++|++.+| .+.| ++|.+. . .|||+|...
T Consensus 420 Lk~v~F~~~~G~~v~fd~~Gd~~-~-~YdI~n~~~ 452 (481)
T 3mq4_A 420 IRNVNFNGSAGTPVMFNKNGDAP-G-RYDIFQYQT 452 (481)
T ss_dssp HHTCEEECTTSSEEECCTTSCCC-C-EEEEEEEC-
T ss_pred HhcceeecCCCCEEEECCCCCCc-e-eEEEEEEEE
Confidence 57899999999 8999 788775 5 899999653
No 87
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=46.66 E-value=11 Score=35.66 Aligned_cols=35 Identities=9% Similarity=0.097 Sum_probs=27.5
Q ss_pred CccceeeeeeeeEEe-eCCcccCCCCEEEEEecCCce
Q 041608 1 IINSRFTSLSGNFQL-VDGKLTSSGAFEIVNVIGKTL 36 (448)
Q Consensus 1 ~~~~~~~G~tg~~~f-~~g~~~~~~~~~i~~~~~~~~ 36 (448)
|++++|+|++|.+.| ++++.... .+.|++++.++-
T Consensus 314 L~~~~~~g~~G~i~f~~~~~~~~~-~~~i~~~~~~~~ 349 (374)
T 3n0x_A 314 MEGMEFDTPKGKMVFRKEDHQALQ-SMYHFKVKVDPA 349 (374)
T ss_dssp HTTCEEEETTEEEEECTTTCBEEC-CEEEEEEECCTT
T ss_pred HhcCCccCCCCCEEECcccCcccc-ceEEEEEEeCCC
Confidence 356789999999999 55666667 889998887654
No 88
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=46.64 E-value=13 Score=35.28 Aligned_cols=39 Identities=5% Similarity=0.072 Sum_probs=27.8
Q ss_pred CccceeeeeeeeEEe-eCCcccCCCCEEEEEe-cCCceEEEE
Q 041608 1 IINSRFTSLSGNFQL-VDGKLTSSGAFEIVNV-IGKTLKRVG 40 (448)
Q Consensus 1 ~~~~~~~G~tg~~~f-~~g~~~~~~~~~i~~~-~~~~~~~~g 40 (448)
|++++|+|++|.+.| ++++.... .+.|+.+ ++..+..+.
T Consensus 315 l~~~~~~g~~G~i~f~~~~~~~~~-~~~i~~~~~~g~~~~v~ 355 (385)
T 1pea_A 315 LYDIDIDAPQGPVRVERQNNHSRL-SSRIAEIDARGVFQVRW 355 (385)
T ss_dssp HTTCCEEETTEEEEECTTTSCEEB-CCEEEEECTTSCEEEEE
T ss_pred HhhCcccCCCCCeEEcCCCCcccc-ceEEEEEcCCCcEEEee
Confidence 356789999999999 65655555 7788888 444455553
No 89
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=44.13 E-value=26 Score=31.33 Aligned_cols=96 Identities=9% Similarity=-0.101 Sum_probs=52.7
Q ss_pred cceeee-cCCcHHhhhhcCCCCcccccccCCHHHHHHHhccCccCCceEEEEcc-hhhHHHHHHcCCCceEEeCCC----
Q 041608 267 DNIGSQ-LGSVVPGALSNLNFKDSRLKKYNSTKEYANALSKESKNGGISAIIDE-MPYIKAFLAKYSAHYTLTAPK---- 340 (448)
Q Consensus 267 ~~v~~~-~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~-~~~~~y~~~~~c~~l~~v~~~---- 340 (448)
++||+. .+++...+++.. ....++ .+.+..+..++|.+|+ +||.+.. .+... +.+. .++.+.+.
T Consensus 104 K~Iav~~~~s~~~~ll~~~-l~~~~~-~~~~~~~~~~al~~G~----vDa~~~~~~~~~~-~~~~---g~~~~~~~~~~~ 173 (280)
T 1zbm_A 104 KRIAVPGRYTTANLLLKLA-VEDFEP-VEMPFDRIIQAVLDEE----VDAGLLIHEGQIT-YADY---GLKCVLDLWDWW 173 (280)
T ss_dssp CEEEESCTTSHHHHHHHHH-CSSCEE-EECCGGGHHHHHHTTS----SSEEEECSGGGGT-GGGG---TCEEEEEHHHHH
T ss_pred CEEEecCCCcHHHHHHHHH-hccCce-EecCHHHHHHHHHcCC----CCEEEEechHHhH-HHhc---CCeEeccHHHHH
Confidence 899996 445444334422 122233 3445678889995555 9998744 34433 2222 22222110
Q ss_pred -ccC-CC-CCeeEEEecC-Cc-cHHHHHHHHHhHhhc
Q 041608 341 -NTN-ST-NGFGFVFQKG-SS-LVHDISKAIARLREE 372 (448)
Q Consensus 341 -~~~-~~-~~~~~a~~k~-sp-l~~~in~~il~l~e~ 372 (448)
+.. .+ ...+++++++ .| +...|++++.+..+.
T Consensus 174 ~~~~g~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~ 210 (280)
T 1zbm_A 174 SEQVKLPLPLGLNAIRRDLSVEVQEEFLRAMRESIAF 210 (280)
T ss_dssp HTTCSSCEEEEEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred HHhhCCCCCeeEEEEcccCCHHHHHHHHHHHHHHHHH
Confidence 001 11 1236788888 67 888888888876654
No 90
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=41.59 E-value=5.2 Score=37.55 Aligned_cols=37 Identities=8% Similarity=0.268 Sum_probs=30.6
Q ss_pred chhhHHHHHHHHhhhcc-cc-cccccccchhhhhhhhhh
Q 041608 227 QFGMIFWYSFSTLVFSQ-RE-KLFSNLSKFVVIVWLFVL 263 (448)
Q Consensus 227 ~~~~~~w~~~~~l~~q~-~~-~~~s~s~Ri~~~~W~~~~ 263 (448)
++.+++||++.+++.-| ++ .|.+..+|+++.+|.++.
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g 83 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLG 83 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTT
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHH
Confidence 57789999999999766 55 588999999999887764
No 91
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=34.81 E-value=1.6e+02 Score=26.40 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=30.2
Q ss_pred cceee-ecCCcHH----hhhhcCCCCcccc--cccCCHHHHHHHhccCccCCceEEEEcch
Q 041608 267 DNIGS-QLGSVVP----GALSNLNFKDSRL--KKYNSTKEYANALSKESKNGGISAIIDEM 320 (448)
Q Consensus 267 ~~v~~-~~~s~~~----~~l~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~a~i~~~ 320 (448)
+++++ ..|+..+ .+++..+.....+ ..+.+..+.+.++..|+ +|+.+...
T Consensus 132 ~~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G~----vda~~~~~ 188 (314)
T 1us5_A 132 KRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVSASQGIQLMQDKR----ADALFYTV 188 (314)
T ss_dssp SEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECCCHHHHHHHHHTTS----CSEEEEEE
T ss_pred CEeecCCCCchHHHHHHHHHHHcCCCHHHcCceecCCHHHHHHHHHcCC----ccEEEEcc
Confidence 67776 4555443 2344455543333 35667888889995544 99888653
No 92
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=32.88 E-value=1.1e+02 Score=29.15 Aligned_cols=98 Identities=7% Similarity=0.013 Sum_probs=57.5
Q ss_pred cceeee-cCCcHHhhh----hcCCCCc---ccccccCCHHHHHHHhccCccCCceEEEEcchhhHHHHHHcCCCceEE-e
Q 041608 267 DNIGSQ-LGSVVPGAL----SNLNFKD---SRLKKYNSTKEYANALSKESKNGGISAIIDEMPYIKAFLAKYSAHYTL-T 337 (448)
Q Consensus 267 ~~v~~~-~~s~~~~~l----~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~y~~~~~c~~l~~-v 337 (448)
++||+. .+++...++ ++.+... .+++.+ ...+...+|.+|+ +||++...+.......+.-..... .
T Consensus 156 k~iav~~~gs~~~~~l~~~L~~~Gl~~~~dv~~v~~-~~~~~~~aL~~G~----vDa~~~~eP~~~~~~~~g~~~~~~~~ 230 (417)
T 2g29_A 156 PKVAMTFPGGTHDMWIRYWLAAGGMEPGKDFSTIVV-PPAQMVANVKVNA----MESFCVGEPWPLQTVNQGVGYQALTT 230 (417)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCCBTTTBEEEEC-CGGGHHHHHHTTS----CSEEEEETTHHHHHHHHTSCEEEEEG
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCCCCCceEEEEC-CHHHHHHHHHcCC----CCEEEeCCCHHHHHHHcCCCEEEEec
Confidence 899997 566554333 4455543 234444 4567889996555 999998888776666554312222 2
Q ss_pred CCCccCCCC-CeeEEEecC----Cc-----cHHHHHHHHHhHhh
Q 041608 338 APKNTNSTN-GFGFVFQKG----SS-----LVHDISKAIARLRE 371 (448)
Q Consensus 338 ~~~~~~~~~-~~~~a~~k~----sp-----l~~~in~~il~l~e 371 (448)
.+. .... ..+++++++ .| +...+.++...+.+
T Consensus 231 ~~~--~~~~p~~~l~~~~~~~~~~p~~~~~~~~A~~~A~~~~~~ 272 (417)
T 2g29_A 231 GQL--WKDHPEKAFGMRADWVDQNPKAAKALLMAVMEAQQWCDQ 272 (417)
T ss_dssp GGT--BTTCBCEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred hhh--cCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 222 2222 357788764 44 44556666666665
No 93
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=31.79 E-value=1e+02 Score=20.32 Aligned_cols=11 Identities=9% Similarity=0.428 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 041608 421 LALVIFLLPSI 431 (448)
Q Consensus 421 lallv~~~E~~ 431 (448)
++++++++..+
T Consensus 26 L~li~~~LwK~ 36 (54)
T 2knc_A 26 LTILVLAMWKV 36 (54)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 44455555443
No 94
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=29.87 E-value=26 Score=32.79 Aligned_cols=33 Identities=9% Similarity=0.204 Sum_probs=26.3
Q ss_pred CccceeeeeeeeEEe-eCCcccCCCCEEEEEecCCc
Q 041608 1 IINSRFTSLSGNFQL-VDGKLTSSGAFEIVNVIGKT 35 (448)
Q Consensus 1 ~~~~~~~G~tg~~~f-~~g~~~~~~~~~i~~~~~~~ 35 (448)
|++++|+|++|.+.| ++|++.. .+.|+.++..+
T Consensus 309 L~~~~~~~~~G~~~f~~~g~~~~--~~~i~~v~~~~ 342 (375)
T 3i09_A 309 LKKMKIDDFYAKGYIRTDGSMIH--DMYLMEVKKPS 342 (375)
T ss_dssp HTTSCEESSSCEEEECTTSBEEC--CEEEEEECCGG
T ss_pred HhCCCccCCCCceEECCCCCeee--eeEEEEEeccc
Confidence 467889999999999 8998874 57788887543
No 95
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=29.45 E-value=73 Score=29.40 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=31.8
Q ss_pred cceeee-cCCcHH----hhhhcCCCCccc--ccccCCHHHHHHHhccCccCCceEEEEcch
Q 041608 267 DNIGSQ-LGSVVP----GALSNLNFKDSR--LKKYNSTKEYANALSKESKNGGISAIIDEM 320 (448)
Q Consensus 267 ~~v~~~-~~s~~~----~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~ 320 (448)
+++++. .|+..+ .+++..+..... .+.|.+..+.+.+|..|+ +|+++...
T Consensus 147 k~v~~~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~~~a~~aL~~G~----vDa~~~~~ 203 (327)
T 4ddd_A 147 KRVNIGSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKSSEQAQALCDNK----IDVMVDVI 203 (327)
T ss_dssp SEEECCSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCHHHHHHHHHTTS----CSBEEEEE
T ss_pred CEEecCCCCccHHHHHHHHHHHcCCChHhcchhhcCCHHHHHHHHHcCC----CCEEEEcc
Confidence 778773 555433 333444554333 357888999999996555 99888643
No 96
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=29.09 E-value=56 Score=19.77 Aligned_cols=12 Identities=25% Similarity=0.072 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 041608 421 LALVIFLLPSIY 432 (448)
Q Consensus 421 lallv~~~E~~~ 432 (448)
+++++.++-++|
T Consensus 24 v~li~~l~~~~~ 35 (38)
T 2k1k_A 24 AALLLGILVFRS 35 (38)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHe
Confidence 334444443444
No 97
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=26.37 E-value=33 Score=31.75 Aligned_cols=37 Identities=16% Similarity=0.314 Sum_probs=31.7
Q ss_pred chhhHHHHHHHHhhhcc-cc-cccccccchhhhhhhhhh
Q 041608 227 QFGMIFWYSFSTLVFSQ-RE-KLFSNLSKFVVIVWLFVL 263 (448)
Q Consensus 227 ~~~~~~w~~~~~l~~q~-~~-~~~s~s~Ri~~~~W~~~~ 263 (448)
++.+++||++.+++.-| ++ .|.+..+|++++++.++.
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~G 153 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVG 153 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHH
Confidence 68899999999999766 55 689999999999998765
No 98
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=25.74 E-value=1.1e+02 Score=27.75 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=28.6
Q ss_pred chhhHHHHHHHHhhhcc-cc-cccccc-------cchhhhhhhhhh
Q 041608 227 QFGMIFWYSFSTLVFSQ-RE-KLFSNL-------SKFVVIVWLFVL 263 (448)
Q Consensus 227 ~~~~~~w~~~~~l~~q~-~~-~~~s~s-------~Ri~~~~W~~~~ 263 (448)
++.+++|+++.++..-| ++ .|.+.. +|+++.+|+++.
T Consensus 201 s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~G 246 (280)
T 3ukm_A 201 NFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLG 246 (280)
T ss_dssp CHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHH
T ss_pred chhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHH
Confidence 57899999999998766 55 455543 599999998775
No 99
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=24.73 E-value=1.1e+02 Score=28.19 Aligned_cols=37 Identities=11% Similarity=0.115 Sum_probs=28.4
Q ss_pred chhhHHHHHHHHhhhcc-cc-cccccccch------hhhhhhhhh
Q 041608 227 QFGMIFWYSFSTLVFSQ-RE-KLFSNLSKF------VVIVWLFVL 263 (448)
Q Consensus 227 ~~~~~~w~~~~~l~~q~-~~-~~~s~s~Ri------~~~~W~~~~ 263 (448)
++.+++|+++.++..-| ++ .|.+..+|. +..+|+++.
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~G 268 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLG 268 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHH
Confidence 57899999999998766 55 467777774 777777665
No 100
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=21.70 E-value=48 Score=30.17 Aligned_cols=37 Identities=14% Similarity=0.210 Sum_probs=31.8
Q ss_pred chhhHHHHHHHHhhhcc-cc-cccccccchhhhhhhhhh
Q 041608 227 QFGMIFWYSFSTLVFSQ-RE-KLFSNLSKFVVIVWLFVL 263 (448)
Q Consensus 227 ~~~~~~w~~~~~l~~q~-~~-~~~s~s~Ri~~~~W~~~~ 263 (448)
++.+++||++.+++.-| ++ .|.+..||+++.++.++.
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~G 131 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIG 131 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHH
Confidence 78999999999999766 55 689999999999987765
No 101
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=20.88 E-value=1.7e+02 Score=19.25 Aligned_cols=12 Identities=42% Similarity=0.437 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q 041608 420 TLALVIFLLPSI 431 (448)
Q Consensus 420 ~lallv~~~E~~ 431 (448)
+++++++++..+
T Consensus 22 LL~Lii~~LwK~ 33 (54)
T 2l8s_A 22 LLMLLILALWKI 33 (54)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 344455555443
Done!